Citrus Sinensis ID: 008482
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 564 | 2.2.26 [Sep-21-2011] | |||||||
| Q6CGU8 | 486 | Probable transporter MCH1 | yes | no | 0.244 | 0.283 | 0.322 | 1e-07 | |
| Q07376 | 486 | Probable transporter MCH1 | yes | no | 0.225 | 0.261 | 0.261 | 7e-05 | |
| Q6FWD4 | 489 | Probable transporter MCH1 | yes | no | 0.361 | 0.417 | 0.217 | 0.0001 | |
| Q96TW9 | 489 | Probable transporter MCH1 | N/A | no | 0.358 | 0.413 | 0.229 | 0.0008 |
| >sp|Q6CGU8|MCH1_YARLI Probable transporter MCH1 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=MCH1 PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 58.9 bits (141), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 89/155 (57%), Gaps = 17/155 (10%)
Query: 388 SSLISLWSIWNFLGRFGAGYVSDYFL-HVKEWARPLFM-VITLAAMSIGHLIIASGL--- 442
S+ +SL++ ++ + R G+ S+ HV +RP+ + VI L A I HL++ SG+
Sbjct: 313 STHVSLFATFSTVSRLVVGFSSEAMESHV---SRPVLLSVIALVAACI-HLMVPSGIFTV 368
Query: 443 -PGALYAG--SILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRV 499
A Y +I+ G YGS ++L+PTI ++++G+ +GTI+ + +A VGS + + +
Sbjct: 369 FDNAKYFSVVTIVNGFSYGSSFTLVPTIVTKVWGIANLGTIWGSFILALAVGSLGYGL-L 427
Query: 500 VGYIYDREAS-GEGNK---CTGTHCFMLSFFIMGS 530
+YD + G G+ C+G HC+ L+F I G+
Sbjct: 428 FAKVYDAASEVGVGSMSQVCSGVHCYGLTFVITGT 462
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Probable transporter. Yarrowia lipolytica (strain CLIB 122 / E 150) (taxid: 284591) |
| >sp|Q07376|MCH1_YEAST Probable transporter MCH1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MCH1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 49.3 bits (116), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 64/130 (49%), Gaps = 3/130 (2%)
Query: 387 TSSLISLWSIWNFLGRFGAGYVSDYFLHVK---EWARPLFMVITLAAMSIGHLIIASGLP 443
++ L+S +++ + R G V+D+F K +W F+ + + A + +S P
Sbjct: 318 STKLLSTYALSSTFTRLLTGIVADFFAKKKISIKWILLTFLSLGVCAQLFLLKMTSSASP 377
Query: 444 GALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYI 503
L LVG+ YG +++ PT+ ++G GT++ ++ IA +GS IF + +
Sbjct: 378 WGLVPTGSLVGIVYGGLFTVYPTLVLLVWGERSFGTVYGSLLIAPAIGSMIFCMLYAKFY 437
Query: 504 YDREASGEGN 513
R SG G+
Sbjct: 438 DSRCMSGGGD 447
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Probable transporter. Does not act in the transport of monocarboxylic acids across the plasma membrane. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) |
| >sp|Q6FWD4|MCH1_CANGA Probable transporter MCH1 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=MCH1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 48.9 bits (115), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/234 (21%), Positives = 100/234 (42%), Gaps = 30/234 (12%)
Query: 303 HAEKMHVRQDPVGYHRLPSEPDVGTDTNDATTS-----LWGGDLDLLQAICTLEFWILSF 357
H + QD + PS+ DV +D S + L++ +I
Sbjct: 229 HEADIMEEQDRMAE---PSDNDVENHYDDNEQSRLLHATHAQQMTLMKVFRDPVLYIFGA 285
Query: 358 AMACGMGSGLATVNNISQIGGSL--GYSSFETSSLISLWSIWNFLGRFGAGYVSDYF--- 412
+ C +G + N+ + L G+ +S+L+S++++ + L R G G DYF
Sbjct: 286 TIFCALGPLEMFIANMGSLTNVLAGGHEPAMSSALLSIYALTSTLTRLGTGLTVDYFNKR 345
Query: 413 -LHVKEW-----------ARPLFMVITLAAMSIGHLIIASGLPGALYAGSILVGVCYGSQ 460
L VK W + +++++++ H++ + L+ I+ G+ YG
Sbjct: 346 QLSVK-WILLLFLVVGLVTQGKIYMLSMSSLDHSHMVT---INRKLFYIGIMQGIAYGGL 401
Query: 461 WSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASGEGNK 514
+++ PTI ++G GT + T+ IA +GS + S + +YD E + +
Sbjct: 402 FTIYPTITLMVWGEKMFGTAYGTLMIAPALGSAL-SCLIYADVYDSECANSTTR 454
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Probable transporter. Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) (taxid: 284593) |
| >sp|Q96TW9|MCH1_HANAN Probable transporter MCH1 OS=Hansenula anomala GN=MCH1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 45.8 bits (107), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 48/209 (22%), Positives = 95/209 (45%), Gaps = 7/209 (3%)
Query: 319 LPSEPDVGTDTNDATTSLWGGDLDLLQAICTLEFWILSFAMACGMGSGLATVNNISQIGG 378
L ++P+ + ND L+ I + ++L F++ +G + N+ +
Sbjct: 233 LLTDPNQEHENNDDLVP--NHKSKFLKFIKDISTYVLLFSLLLSIGPSEMYITNMGSLVK 290
Query: 379 SLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARP--LFMVITLAAMSIGHL 436
++ +S S +++ ++++ L R G +SD+ + + +R L +I L + +
Sbjct: 291 AITPNSL-ISDQVAIHAVFSTLSRLSLGALSDFLVTNYQISRSWLLLSIIVLGFFTQIFI 349
Query: 437 IIASGLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFS 496
++ + Y S L G YG ++L PT+ I+G G+ + + IA +GS F
Sbjct: 350 ATSTFVKDQYYIISALSGFSYGGLFTLYPTVIFSIWGPEIFGSAWGSFMIAPAIGSTTFG 409
Query: 497 VRVVGYIYDREASGEGNKCTGTHCFMLSF 525
+ V G +YD A G + T +C L F
Sbjct: 410 M-VFGLVYD-SACGVFAESTTGNCVSLVF 436
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Probable transporter. Hansenula anomala (taxid: 4927) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 564 | ||||||
| 255540869 | 535 | conserved hypothetical protein [Ricinus | 0.948 | 1.0 | 0.687 | 0.0 | |
| 225456622 | 537 | PREDICTED: uncharacterized protein LOC10 | 0.946 | 0.994 | 0.660 | 0.0 | |
| 356507186 | 534 | PREDICTED: uncharacterized protein LOC10 | 0.920 | 0.971 | 0.632 | 0.0 | |
| 449440744 | 531 | PREDICTED: uncharacterized protein LOC10 | 0.918 | 0.975 | 0.637 | 0.0 | |
| 357494111 | 535 | Nodulin-related protein [Medicago trunca | 0.920 | 0.970 | 0.635 | 0.0 | |
| 359491754 | 559 | PREDICTED: uncharacterized protein LOC10 | 0.969 | 0.978 | 0.588 | 1e-179 | |
| 297734047 | 612 | unnamed protein product [Vitis vinifera] | 0.927 | 0.854 | 0.595 | 1e-179 | |
| 255540871 | 551 | conserved hypothetical protein [Ricinus | 0.968 | 0.990 | 0.580 | 1e-172 | |
| 29824365 | 533 | unknown protein [Arabidopsis thaliana] g | 0.927 | 0.981 | 0.569 | 1e-171 | |
| 15221382 | 533 | nodulin-like and major facilitator domai | 0.927 | 0.981 | 0.568 | 1e-170 |
| >gi|255540869|ref|XP_002511499.1| conserved hypothetical protein [Ricinus communis] gi|223550614|gb|EEF52101.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 748 bits (1931), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 388/564 (68%), Positives = 452/564 (80%), Gaps = 29/564 (5%)
Query: 1 MERLKQLRLNTRWVSTVASIWIQCTSGSLYTFSIYSPALKTTQHYDQTTLDTVSVFKDIG 60
MERLK L+T+ STVASIWIQCTSGSLYTFS+YSPALK+TQ+YDQ+TL+TVSVFKDIG
Sbjct: 1 MERLK---LDTKLFSTVASIWIQCTSGSLYTFSVYSPALKSTQNYDQSTLETVSVFKDIG 57
Query: 61 ANTGTLSGVLYTYSTSDHSSHHPRQQRLTRLLGPWVVLLVGAIQCFAGYFLMWASVVGLI 120
AN G LSGVLYT +T+ H R + + GPW+VLLVGAIQCF GYFLMWA+V GLI
Sbjct: 58 ANCGVLSGVLYTKATTRHHRRRGRYESAS---GPWLVLLVGAIQCFIGYFLMWAAVAGLI 114
Query: 121 PRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFPTYSGTAVGIMKGFVGLSGAILIQVY 180
PRPPV MCLFM AAH +FFNTADVVTSV+NFP+YSGTAVGIMKGF+GLSGAILIQVY
Sbjct: 115 PRPPVVAMCLFMFVAAHAQSFFNTADVVTSVKNFPSYSGTAVGIMKGFLGLSGAILIQVY 174
Query: 181 QTFFNNKPTSYLLLLALLASIDPLLLMWFVRICNTNEGNEKKHLNSFSLIALIVAAYLMV 240
QT FNNKPT YLL+L+LL+SI+P++LMWFVRI +EG+EKK+L+SFS+IAL +AAYLM+
Sbjct: 175 QTMFNNKPTLYLLMLSLLSSINPVILMWFVRIYTVSEGDEKKYLDSFSVIALFLAAYLMI 234
Query: 241 IIILEHIFALPFLVRVLTLILLLLLLASPLYVAIRVQGSDSDRTSETSFCEEDELTDDPH 300
IIILEH+F+ F VR++ +LL++LL SPL+VAI+V +SD SE ++L D+
Sbjct: 235 IIILEHVFSFQFTVRIIAFVLLMMLLMSPLFVAIKVPEKESDIVSE-----RNQLVDESK 289
Query: 301 EMHAEKMHVRQDPVGYHRLPSEPDVGTDTNDATTSLWGGDLDLLQAICTLEFWILSFAMA 360
R DP GY LPS P+ + +L QA T++FWIL AMA
Sbjct: 290 ---------RDDPAGYISLPSNPEHDNGVYEK---------NLFQAARTVDFWILFLAMA 331
Query: 361 CGMGSGLATVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWAR 420
CGMGSGLATVNN+SQ+G SLGY+S ET++L+SLWSIWNFLGRFGAGY+SDYFLH + WAR
Sbjct: 332 CGMGSGLATVNNMSQVGESLGYASLETNTLVSLWSIWNFLGRFGAGYISDYFLHSRGWAR 391
Query: 421 PLFMVITLAAMSIGHLIIASGLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTI 480
PLFM ITLA M+IGH++IASGLPGALYAGS+LVGVCYGSQWSLMPTI+SEIFGV MGTI
Sbjct: 392 PLFMAITLAGMTIGHVVIASGLPGALYAGSLLVGVCYGSQWSLMPTISSEIFGVGHMGTI 451
Query: 481 FNTITIANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSFFIMGSATLCGSLAAF 540
FN ITIA+PVGSYIFSVRVVGYIYD+EASGEG C GTHCFM SF +M SAT GSLAA
Sbjct: 452 FNAITIASPVGSYIFSVRVVGYIYDKEASGEGTACVGTHCFMSSFLVMASATFLGSLAAL 511
Query: 541 GLFLRTKRFYNEVILRRLLHSVRE 564
L LRTK FYN VIL RLLHSVRE
Sbjct: 512 ALSLRTKTFYNRVILGRLLHSVRE 535
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225456622|ref|XP_002266496.1| PREDICTED: uncharacterized protein LOC100250053 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 725 bits (1871), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/556 (66%), Positives = 429/556 (77%), Gaps = 22/556 (3%)
Query: 8 RLNTRWVSTVASIWIQCTSGSLYTFSIYSPALKTTQHYDQTTLDTVSVFKDIGANTGTLS 67
R+ ++W++T+ASIWIQC+SGSLYTFSI+S ALK++Q YDQ+TLDTVSV KD+GA G LS
Sbjct: 3 RIQSKWIATLASIWIQCSSGSLYTFSIFSSALKSSQGYDQSTLDTVSVVKDVGATAGVLS 62
Query: 68 GVLYTYSTSDHSSHHPRQQRLTRLLGPWVVLLVGAIQCFAGYFLMWASVVGLIPRPPVPV 127
G LY+ H S R+ L GPWVV+ VGAIQCFAGYF +W SV G IPR PVP+
Sbjct: 63 GFLYSAVAVPHRS---RRSSSCFLRGPWVVIAVGAIQCFAGYFFLWLSVAGAIPRQPVPL 119
Query: 128 MCLFMLFAAHGMTFFNTADVVTSVRNFPTYSGTAVGIMKGFVGLSGAILIQVYQTFFNNK 187
MCLFM AH TFFNTA+VVT+V NFP +SGT VGIMKGF+GLSGAILIQ+YQ F
Sbjct: 120 MCLFMFLTAHAQTFFNTANVVTAVHNFPDFSGTVVGIMKGFLGLSGAILIQLYQAIFKGN 179
Query: 188 PTSYLLLLALLASIDPLLLMWFVRICNTNEGNEKKHLNSFSLIALIVAAYLMVIIILEHI 247
P SYLL+L L+ +++PLLLM VRI NT EG+EKKHLN FSL+AL+VA YLM +IILE+I
Sbjct: 180 PASYLLMLMLVTTVNPLLLMCLVRIYNTKEGDEKKHLNGFSLVALVVAGYLMALIILENI 239
Query: 248 FALPFLVRVLTLILLLLLLASPLYVAIRVQGSDSDRTSETSFCEEDELTDDPHEMHAEKM 307
L F R+ TL+LLLLLLA PL V I+ Q S+ D TS+T E+++L DDP ++ AEK+
Sbjct: 240 LTLQFPARLFTLVLLLLLLAMPLAVTIKAQQSNFDGTSQTFLIEKNQLIDDPKQLDAEKI 299
Query: 308 HVRQDPVGYHRLPSEPDVGTDTNDATTSLWGGDLDLLQAICTLEFWILSFAMACGMGSGL 367
QDP GYH G +L+LLQA+ T FW L AMACGMGSGL
Sbjct: 300 GKGQDPAGYHL-------------------GENLNLLQAMGTCNFWCLFLAMACGMGSGL 340
Query: 368 ATVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVIT 427
ATVNNI QIGG+ GY SFETS+L+SLWSIWNFLGRFG GYVSDYFLH + WARP+FMVIT
Sbjct: 341 ATVNNIGQIGGAFGYKSFETSTLVSLWSIWNFLGRFGTGYVSDYFLHTRGWARPVFMVIT 400
Query: 428 LAAMSIGHLIIASGLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIA 487
LA MSIGH +IASG+PGALYAGS+LVGV YGSQWSLMPTI SEIFGV +GTIFNTIT+A
Sbjct: 401 LATMSIGHFVIASGMPGALYAGSVLVGVSYGSQWSLMPTITSEIFGVQHLGTIFNTITMA 460
Query: 488 NPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSFFIMGSATLCGSLAAFGLFLRTK 547
+PVGSYIFSVRVVGYIYD+EAS +GNKCTGTHCFM+SF IM SATL G A LFLRTK
Sbjct: 461 SPVGSYIFSVRVVGYIYDKEASADGNKCTGTHCFMVSFLIMASATLLGCFVALILFLRTK 520
Query: 548 RFYNEVILRRLLHSVR 563
FYN+V+LRRL H R
Sbjct: 521 SFYNQVVLRRLQHPGR 536
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356507186|ref|XP_003522351.1| PREDICTED: uncharacterized protein LOC100814668 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 676 bits (1745), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/552 (63%), Positives = 413/552 (74%), Gaps = 33/552 (5%)
Query: 9 LNTRWVSTVASIWIQCTSGSLYTFSIYSPALKTTQHYDQTTLDTVSVFKDIGANTGTLSG 68
LN++W STVASIWIQCTSGSLYTFSIYS +K+TQ YDQ+TL+ VSV KDIG N G LSG
Sbjct: 10 LNSKWGSTVASIWIQCTSGSLYTFSIYSQTIKSTQRYDQSTLEFVSVSKDIGVNVGVLSG 69
Query: 69 VLYTYSTSDHSSHHPRQQRLTRLLGPWVVLLVGAIQCFAGYFLMWASVVGLIPRPPVPVM 128
+LY + +R T GPW++ L+G+ QCF GYFLMWA+V GL+P P+PVM
Sbjct: 70 LLYDF----------LARRTTT--GPWLLHLLGSAQCFLGYFLMWAAVAGLLPPVPLPVM 117
Query: 129 CLFMLFAAHGMTFFNTADVVTSVRNFPTYSGTAVGIMKGFVGLSGAILIQVYQTFFNNKP 188
CLFM AAHG +FFNT++VVT VRNFP SGT VGI+KGF+GLSGAILIQ+Y T FNNKP
Sbjct: 118 CLFMFVAAHGQSFFNTSNVVTGVRNFPNNSGTIVGIIKGFLGLSGAILIQMYGTIFNNKP 177
Query: 189 TSYLLLLALLASIDPLLLMWFVRICNTNEGNEKKHLNSFSLIALIVAAYLMVIIILEHIF 248
SYLL LALL I+ LLLMWFVRI NT E E+K+LN FS +AL+VAAYLMV+IILE+IF
Sbjct: 178 MSYLLTLALLPPINTLLLMWFVRIHNTQEAEERKYLNMFSSMALVVAAYLMVVIILENIF 237
Query: 249 ALPFLVRVLTLILLLLLLASPLYVAIRVQGSDSDRTSETSFCEEDE--LTDDPHEMHAEK 306
+L VR+ ++L++LLAS L +A +S R SF +E + + E EK
Sbjct: 238 SLQSWVRIFIFVVLMVLLASLLCIAFEAHEKNSGR----SFLDEGSPLIVEPSPEDTTEK 293
Query: 307 MHVRQDPVGYHRLPSEPDVGTDTNDATTSLWGGDLDLLQAICTLEFWILSFAMACGMGSG 366
R+D N T G +L+L QA+ T+ FW+L ++ACGMGSG
Sbjct: 294 EDARKDSF--------------NNQRTNLQLGENLNLFQAVKTVNFWVLFVSVACGMGSG 339
Query: 367 LATVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVI 426
LATVNN+ QIG SLGY+S ET SL+SLWSIWNFLGRFGAGYVSDY+LH + WARPLFMVI
Sbjct: 340 LATVNNLGQIGESLGYTSHETGSLVSLWSIWNFLGRFGAGYVSDYYLHTRGWARPLFMVI 399
Query: 427 TLAAMSIGHLIIASGLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITI 486
TL MSIGH++IASGLPGALYAGSILVG+CYGSQWSLMPTI SEIFGV MG+IFNTITI
Sbjct: 400 TLLIMSIGHVVIASGLPGALYAGSILVGICYGSQWSLMPTITSEIFGVGNMGSIFNTITI 459
Query: 487 ANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSFFIMGSATLCGSLAAFGLFLRT 546
A+PVGSYIFSVRVVGYIYD+EA +GN C GTHCFM SF IM SA + GSL+A GLF RT
Sbjct: 460 ASPVGSYIFSVRVVGYIYDKEA-WDGNTCIGTHCFMFSFLIMASAAILGSLSALGLFFRT 518
Query: 547 KRFYNEVILRRL 558
K FY +VILRR+
Sbjct: 519 KNFYGQVILRRI 530
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Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449440744|ref|XP_004138144.1| PREDICTED: uncharacterized protein LOC101216552 [Cucumis sativus] gi|449477327|ref|XP_004154992.1| PREDICTED: uncharacterized protein LOC101231734 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 663 bits (1711), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/552 (63%), Positives = 422/552 (76%), Gaps = 34/552 (6%)
Query: 9 LNTRWVSTVASIWIQCTSGSLYTFSIYSPALKTTQHYDQTTLDTVSVFKDIGANTGTLSG 68
L +WVSTVAS+WIQCTSGSLYTFSIYS LK+TQ YDQ+TLD VSVFKDIG N G L+G
Sbjct: 10 LKNKWVSTVASVWIQCTSGSLYTFSIYSQTLKSTQGYDQSTLDIVSVFKDIGVNCGVLAG 69
Query: 69 VLYTYSTSDHSSHHPRQQRLTRLLGPWVVLLVGAIQCFAGYFLMWASVVGLIPRPPVPVM 128
LY ++T+ H R GPW+V GAIQCF GYF +WA+V G++PRPPVPVM
Sbjct: 70 FLYYFATA----HGGRP-------GPWIVHFAGAIQCFLGYFFIWAAVYGVLPRPPVPVM 118
Query: 129 CLFMLFAAHGMTFFNTADVVTSVRNFPTYSGTAVGIMKGFVGLSGAILIQVYQTFFNNKP 188
CLFML AAH +FFNTA+VVT VRNFP YSGT VGIMKGF+GLSGAILIQ Y+T FN +P
Sbjct: 119 CLFMLVAAHAQSFFNTANVVTGVRNFPRYSGTIVGIMKGFLGLSGAILIQTYETIFNGQP 178
Query: 189 TSYLLLLALLASIDPLLLMWFVRICNTNEGNEKKHLNSFSLIALIVAAYLMVIIILEHIF 248
TS+LL+LALL +++ LL MWFVRI + ++G EK+HLN+ S+I L+VA YLM+ I+LEHIF
Sbjct: 179 TSFLLMLALLPTLNSLLCMWFVRIHHVDDGIEKEHLNTLSIITLVVATYLMIKIVLEHIF 238
Query: 249 ALPFLVRVLTLILLLLLLASPLYVAIRVQGSDSDRTSETSFCEEDELTDDPHEMHAEKMH 308
F + V T ILLL+LLASPLY+AIR Q +S R SF E D+L ++ ++ H
Sbjct: 239 TFQFPLHVATFILLLMLLASPLYIAIRAQPRESRRILHPSFTESDQLIGRHNQETSDFDH 298
Query: 309 VRQDPVGYHRLPSEPDVGTDTNDATTSLWGGDLDLLQAICTLEFWILSFAMACGMGSGLA 368
R G ++ ++ L L QA+ T++FWIL FA ACGMG+GLA
Sbjct: 299 ER---------------GRESEES--------LTLFQALYTIDFWILFFATACGMGTGLA 335
Query: 369 TVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITL 428
TVNNISQIG SLGY+S E ++L+SLWSIWNF GRFGAGYVSDY+LH K WARPLFM ITL
Sbjct: 336 TVNNISQIGLSLGYTSSEINTLVSLWSIWNFFGRFGAGYVSDYYLHAKGWARPLFMFITL 395
Query: 429 AAMSIGHLIIASGLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIAN 488
MSIGH++IASGLPGAL+AGSI+VGVCYGSQWSLMPTI SEIFGV+ MGTIFN IT+A+
Sbjct: 396 MTMSIGHVVIASGLPGALFAGSIVVGVCYGSQWSLMPTITSEIFGVVHMGTIFNAITVAS 455
Query: 489 PVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSFFIMGSATLCGSLAAFGLFLRTKR 548
PVGSY+FSVRVVGYIYD+EAS EG+ C GT+CFMLSFFIM ATL GSLAA GLF +
Sbjct: 456 PVGSYLFSVRVVGYIYDKEASSEGDTCIGTYCFMLSFFIMAFATLLGSLAALGLFFWRRS 515
Query: 549 FYNEVILRRLLH 560
FY++V++RRL H
Sbjct: 516 FYDQVVVRRLQH 527
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357494111|ref|XP_003617344.1| Nodulin-related protein [Medicago truncatula] gi|355518679|gb|AET00303.1| Nodulin-related protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 652 bits (1681), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/551 (63%), Positives = 418/551 (75%), Gaps = 32/551 (5%)
Query: 11 TRWVSTVASIWIQCTSGSLYTFSIYSPALKTTQHYDQTTLDTVSVFKDIGANTGTLSGVL 70
++WVSTVASIWIQCTSGSLYTFSIYS LK+TQHYDQ+TLD VSV KDIGAN G LSG++
Sbjct: 10 SKWVSTVASIWIQCTSGSLYTFSIYSQTLKSTQHYDQSTLDIVSVSKDIGANIGVLSGLI 69
Query: 71 YTYSTSDHSSHHPRQQRLTRLLGPWVVLLVGAIQCFAGYFLMWASVVGLIPRPPVPVMCL 130
Y + + + GPWVV L G+ QCF GYFLMWA+V G++P PVPVMCL
Sbjct: 70 YDFLATRTRT------------GPWVVHLFGSAQCFLGYFLMWAAVSGVLPPVPVPVMCL 117
Query: 131 FMLFAAHGMTFFNTADVVTSVRNFPTYSGTAVGIMKGFVGLSGAILIQVYQTFFNNKPTS 190
FM AAH ++FNT++VVT VRNFP Y GT VGI+KGF+GLSGAILIQVY+T FNN P S
Sbjct: 118 FMFVAAHAQSYFNTSNVVTGVRNFPNYGGTIVGILKGFLGLSGAILIQVYRTVFNNNPMS 177
Query: 191 YLLLLALLASIDPLLLMWFVRICNTN-EG-NEKKHLNSFSLIALIVAAYLMVIIILEHIF 248
YLL+L+LL I+ L+LMWFVRI NT EG +EKK+LN FSL+AL++AAYLM++IILE+I
Sbjct: 178 YLLMLSLLPPINTLILMWFVRIHNTRREGESEKKYLNIFSLMALVIAAYLMIVIILENIL 237
Query: 249 ALPFLVRVLTLILLLLLLASPLYVAIRVQGSDSDRTSETSFCEEDELTDDPHEMHAEKMH 308
L +R+ T I+L++LLAS L +A + +S ++ SF E +
Sbjct: 238 TLQLSIRIFTFIVLMVLLASLLCIAFKAHEKNSSNSASKSFLAE-----------GSNLI 286
Query: 309 VRQDPVGYHRLPSEPDVGTDTNDATTSLWGGDLDLLQAICTLEFWILSFAMACGMGSGLA 368
R+D + LP++ DTN T GG+L+L QA+ TL FWIL +MACGMGSGLA
Sbjct: 287 AREDSSN-NLLPAD-----DTNSQRTLQQGGNLNLFQAVKTLNFWILFVSMACGMGSGLA 340
Query: 369 TVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITL 428
TVNN+SQIG SLGYS+ ET SL++LWSIWNFLGRFGAGYVSDYFLH + WARP FMVITL
Sbjct: 341 TVNNMSQIGESLGYSTLETGSLVALWSIWNFLGRFGAGYVSDYFLHTRGWARPFFMVITL 400
Query: 429 AAMSIGHLIIASGLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIAN 488
MSIGH++IA GLPGALY GSILVG+CYGSQWSLMPTI SEIFGV MG+IFNTITIA+
Sbjct: 401 MTMSIGHVVIAYGLPGALYVGSILVGICYGSQWSLMPTITSEIFGVGHMGSIFNTITIAS 460
Query: 489 PVGSYIFSVRVVGYIYDREASG-EGNKCTGTHCFMLSFFIMGSATLCGSLAAFGLFLRTK 547
PVGSYIFSVRV+GYIYD+EASG EGNKC GTHCF SF IM SA + GSL A LFLRT+
Sbjct: 461 PVGSYIFSVRVLGYIYDKEASGTEGNKCAGTHCFKFSFLIMASAAILGSLTALCLFLRTR 520
Query: 548 RFYNEVILRRL 558
FY +V+LRR+
Sbjct: 521 HFYGQVVLRRI 531
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359491754|ref|XP_002266530.2| PREDICTED: uncharacterized protein LOC100244916 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 634 bits (1636), Expect = e-179, Method: Compositional matrix adjust.
Identities = 332/564 (58%), Positives = 402/564 (71%), Gaps = 17/564 (3%)
Query: 9 LNTRWVSTVASIWIQCTSGSLYTFSIYSPALKTTQHYDQTTLDTVSVFKDIGANTGTLSG 68
L+++W++TVASIWIQCT G Y F +YS LK++Q YDQ TLDTVSVFKDIGAN G LSG
Sbjct: 2 LSSKWITTVASIWIQCTCGGSYAFGVYSSVLKSSQSYDQATLDTVSVFKDIGANAGVLSG 61
Query: 69 VLYT-----YSTSDHSSHHPRQ-QRLTRLLGPWVVLLVGAIQCFAGYFLMWASVVGLIPR 122
+LY+ SH L GPWVV + GAIQCFAGYFL+W SV G+I R
Sbjct: 62 LLYSAVAVHRRRRRRDSHQASSVSYLLSFGGPWVVHVAGAIQCFAGYFLIWLSVTGVIHR 121
Query: 123 PPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFPTYSGTAVGIMKGFVGLSGAILIQVYQT 182
P VP+MCLFM AAH TFFNTA+VVT+V+NFP Y GT VGIMKGF+GLSGA+LIQVY
Sbjct: 122 PAVPLMCLFMFIAAHAQTFFNTANVVTAVQNFPDYGGTIVGIMKGFLGLSGAVLIQVYDA 181
Query: 183 FFNNKPTSYLLLLALLASIDPLLLMWFVRICNTNEGNEKKHLNSFSLIALIVAAYLMVII 242
F P+ ++L+LALL + LLLM VRI + KK LN FS +AL+VAAYLM++I
Sbjct: 182 LFEGNPSIFILMLALLPTFISLLLMCLVRIDERDTQGNKKQLNRFSTVALLVAAYLMIVI 241
Query: 243 ILEHIFALPFLVRVLTLILLLLLLASPLYVAIRVQGSDSDRTSETSFC-EEDELTDDPHE 301
ILE+IF P R+ TLILLLLLLASPL +A +S+ +S+ E L D
Sbjct: 242 ILENIFTFPLWARIATLILLLLLLASPLGIAANALKDESEISSQGLVSSERSPLLSDNGS 301
Query: 302 MHAEK-MHVRQDPVGYHRLPSEPDVGTDTNDATTSLWGGDLDLLQAICTLEFWILSFAMA 360
+ +E+ DP +H + + D D L+++QA+ T FW+L AMA
Sbjct: 302 LQSERWSSAAGDPKEHHAADEDTPMLQDEED---------LNVVQAMRTGNFWLLFIAMA 352
Query: 361 CGMGSGLATVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWAR 420
CGMGSGLAT+NNISQIG SLGY++ E ++L+SLWSIWNFLGRFGAGYVSD LH + WAR
Sbjct: 353 CGMGSGLATINNISQIGESLGYTTVEINTLVSLWSIWNFLGRFGAGYVSDILLHRRGWAR 412
Query: 421 PLFMVITLAAMSIGHLIIASGLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTI 480
PL MVITLA M+IGH+IIASG G LY GS++VGVCYGSQWSLMPTI SE+FGV MGTI
Sbjct: 413 PLLMVITLATMTIGHVIIASGFAGNLYVGSVIVGVCYGSQWSLMPTITSELFGVGHMGTI 472
Query: 481 FNTITIANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSFFIMGSATLCGSLAAF 540
FNTI IA+PVGSY+ SVRV+GYIYD+EASG+ N C+GTHCFMLSF I+G TL GSL A
Sbjct: 473 FNTIAIASPVGSYLLSVRVIGYIYDKEASGKQNSCSGTHCFMLSFLIIGCVTLFGSLVAS 532
Query: 541 GLFLRTKRFYNEVILRRLLHSVRE 564
LF RTKRFY V+LRRL S+++
Sbjct: 533 ALFFRTKRFYKLVVLRRLNLSLQD 556
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297734047|emb|CBI15294.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 633 bits (1633), Expect = e-179, Method: Compositional matrix adjust.
Identities = 333/559 (59%), Positives = 400/559 (71%), Gaps = 36/559 (6%)
Query: 9 LNTRWVSTVASIWIQCTSGSLYTFSIYSPALKTTQHYDQTTLDTVSVFKDIGANTGTLSG 68
L+++W++TVASIWIQCT G Y F +YS LK++Q YDQ TLDTVSVFKDIGAN G LSG
Sbjct: 2 LSSKWITTVASIWIQCTCGGSYAFGVYSSVLKSSQSYDQATLDTVSVFKDIGANAGVLSG 61
Query: 69 VLYTYSTSDHSSHHPRQQRLTRLLGPWVVLLVGAIQCFAGYFLMWASVVGLIPRPPVPVM 128
+LY+ ++S L GPWVV + GAIQCFAGYFL+W SV G+I RP VP+M
Sbjct: 62 LLYSAASS--------VSYLLSFGGPWVVHVAGAIQCFAGYFLIWLSVTGVIHRPAVPLM 113
Query: 129 CLFMLFAAHGMTFFNTADVVTSVRNFPTYSGTAVGIMKGFVGLSGAILIQVYQTFFNNKP 188
CLFM AAH TFFNTA+VVT+V+NFP Y GT VGIMKGF+GLSGA+LIQVY F P
Sbjct: 114 CLFMFIAAHAQTFFNTANVVTAVQNFPDYGGTIVGIMKGFLGLSGAVLIQVYDALFEGNP 173
Query: 189 TSYLLLLALLASIDPLLLMWFVRICNTNEGNEKKHLNSFSLIALIVAAYLMVIIILEHIF 248
+ ++L+LALL + LLLM VRI + KK LN FS +AL+VAAYLM++IILE+IF
Sbjct: 174 SIFILMLALLPTFISLLLMCLVRIDERDTQGNKKQLNRFSTVALLVAAYLMIVIILENIF 233
Query: 249 ALPFLVRVLTLILLLLLLASPLYVAIRVQGSDSDRTSETSFC-EEDELTDDPHEMHA--E 305
P R+ TLILLLLLLASPL +A +S+ +S+ E L DP E HA E
Sbjct: 234 TFPLWARIATLILLLLLLASPLGIAANALKDESEISSQGLVSSERSPLLRDPKEHHAADE 293
Query: 306 KMHVRQDPVGYHRLPSEPDVGTDTNDATTSLWGGDLDLLQAICTLEFWILSFAMACGMGS 365
+ QD DL+++QA+ T FW+L AMACGMGS
Sbjct: 294 DTPMLQDE-------------------------EDLNVVQAMRTGNFWLLFIAMACGMGS 328
Query: 366 GLATVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMV 425
GLAT+NNISQIG SLGY++ E ++L+SLWSIWNFLGRFGAGYVSD LH + WARPL MV
Sbjct: 329 GLATINNISQIGESLGYTTVEINTLVSLWSIWNFLGRFGAGYVSDILLHRRGWARPLLMV 388
Query: 426 ITLAAMSIGHLIIASGLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTIT 485
ITLA M+IGH+IIASG G LY GS++VGVCYGSQWSLMPTI SE+FGV MGTIFNTI
Sbjct: 389 ITLATMTIGHVIIASGFAGNLYVGSVIVGVCYGSQWSLMPTITSELFGVGHMGTIFNTIA 448
Query: 486 IANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSFFIMGSATLCGSLAAFGLFLR 545
IA+PVGSY+ SVRV+GYIYD+EASG+ N C+GTHCFMLSF I+G TL GSL A LF R
Sbjct: 449 IASPVGSYLLSVRVIGYIYDKEASGKQNSCSGTHCFMLSFLIIGCVTLFGSLVASALFFR 508
Query: 546 TKRFYNEVILRRLLHSVRE 564
TKRFY V+LRRL S+++
Sbjct: 509 TKRFYKLVVLRRLNLSLQD 527
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255540871|ref|XP_002511500.1| conserved hypothetical protein [Ricinus communis] gi|223550615|gb|EEF52102.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 612 bits (1579), Expect = e-172, Method: Compositional matrix adjust.
Identities = 327/563 (58%), Positives = 405/563 (71%), Gaps = 17/563 (3%)
Query: 4 LKQLRLNTRWVSTVASIWIQCTSGSLYTFSIYSPALKTTQHYDQTTLDTVSVFKDIGANT 63
+++ L T+W++TVASIWIQC+ G+ YTF IYS LK++Q+YDQ+TLDTVSVFKDIGAN
Sbjct: 1 MEREMLKTKWIATVASIWIQCSCGASYTFGIYSSILKSSQNYDQSTLDTVSVFKDIGANA 60
Query: 64 GTLSGVLYTYSTSDHSSHHPRQQRLTRLLG----PWVVLLVGAIQCFAGYFLMWASVVGL 119
G +SG+LY+ T QR R LG PWVV GAIQCF GYFLMWA VVGL
Sbjct: 61 GVISGLLYSAVT---------LQRNRRWLGIFGSPWVVHAAGAIQCFFGYFLMWACVVGL 111
Query: 120 IPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFPTYSGTAVGIMKGFVGLSGAILIQV 179
IPRPPV VMCLFM AAH TFFNTA+VV+ V NF Y GT VGIMKGF+GLSGAILIQ
Sbjct: 112 IPRPPVAVMCLFMWVAAHAQTFFNTANVVSGVHNFADYGGTIVGIMKGFLGLSGAILIQF 171
Query: 180 YQTFFNNKPTSYLLLLALLASIDPLLLMWFVRICNTNEGNEKKHLNSFSLIALIVAAYLM 239
Y T P++++LLLA+ ++ LLLM VR +T+ ++KKHLN+FS +AL +AAYL
Sbjct: 172 YNTVCKGDPSTFILLLAVTPTLISLLLMTLVRNYDTSSKDDKKHLNAFSAVALTIAAYLT 231
Query: 240 VIIILEHIFALPFLVRVLTLILLLLLLASPLYVAIRVQGSDSDRTSETSFCEEDELTDDP 299
+ II E+IF LP +R++T ++LLLL+ SPL +A R SDR ++ +E P
Sbjct: 232 INIIFENIFILPLWIRLVTFLVLLLLVGSPLAIATRALRESSDRYAQALL---EERGYKP 288
Query: 300 HEMHAEKMHVRQDPVGYHRLPSEPDV-GTDTNDATTSLWGGDLDLLQAICTLEFWILSFA 358
+ M + ++ +DP Y L S D+ T+D +S DL+LLQA+ T FW+L A
Sbjct: 289 NTMMSSELPTEEDPNDYRALLSNEDLEAKATSDHRSSSDEEDLNLLQAVSTGNFWLLFIA 348
Query: 359 MACGMGSGLATVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEW 418
M CG+GSGLAT+NNISQ+G SLGY++ +SL+SL SIWNFLGRFGAG++SD FLH W
Sbjct: 349 MFCGLGSGLATINNISQVGQSLGYTAISRNSLVSLLSIWNFLGRFGAGFISDIFLHRGGW 408
Query: 419 ARPLFMVITLAAMSIGHLIIASGLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMG 478
ARPLF+ ITLA ++IGH++IASG P LY GS+LVG+ YGSQWSLMPTI SEIFGV MG
Sbjct: 409 ARPLFVAITLATLAIGHIVIASGFPYNLYLGSVLVGISYGSQWSLMPTITSEIFGVGHMG 468
Query: 479 TIFNTITIANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSFFIMGSATLCGSLA 538
TIFNTI IA+P+GSYIFSVRV+GYIYD+ ASGE N C GT CFMLSF IM S G L
Sbjct: 469 TIFNTIAIASPLGSYIFSVRVIGYIYDKAASGEDNLCYGTRCFMLSFLIMASVAFFGVLV 528
Query: 539 AFGLFLRTKRFYNEVILRRLLHS 561
A LF RT+RFY V+LRR+ HS
Sbjct: 529 ALVLFFRTRRFYQAVVLRRVHHS 551
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|29824365|gb|AAP04143.1| unknown protein [Arabidopsis thaliana] gi|110739083|dbj|BAF01458.1| hypothetical protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 608 bits (1567), Expect = e-171, Method: Compositional matrix adjust.
Identities = 318/558 (56%), Positives = 388/558 (69%), Gaps = 35/558 (6%)
Query: 9 LNTRWVSTVASIWIQCTSGSLYTFSIYSPALKTTQHYDQTTLDTVSVFKDIGANTGTLSG 68
L T+WV+ ASIWIQC SG+ YTF IYS LK+TQ YDQ+TLDTVSVFKDIGAN G SG
Sbjct: 4 LRTKWVAMTASIWIQCASGASYTFGIYSAVLKSTQSYDQSTLDTVSVFKDIGANAGVFSG 63
Query: 69 VLYTYSTSDHSSHHPRQQRLTRLLGPWVVLLVGAIQCFAGYFLMWASVVGLIPRPPVPVM 128
+LYTY+TS+ PWVVL VGAIQCFAGYFL+WASV GLI +PPVP+M
Sbjct: 64 LLYTYATSNRLRGRGGGIGGAGG--PWVVLAVGAIQCFAGYFLIWASVTGLIRKPPVPLM 121
Query: 129 CLFMLFAAHGMTFFNTADVVTSVRNFPTYSGTAVGIMKGFVGLSGAILIQVYQTFFNNKP 188
CLFM AA TFFNTA+VV++V NF Y GTAVGIMKGF+GLSGAILIQ+Y+T P
Sbjct: 122 CLFMFLAAQSQTFFNTANVVSAVENFADYGGTAVGIMKGFLGLSGAILIQLYETLCAGDP 181
Query: 189 TSYLLLLALLASIDPLLLMWFVRICNTNEGNEKKHLNSFSLIALIVAAYLMVIIILEHIF 248
S++LLLA+ ++ LL+M VRI T+ ++KKHLN S ++LI+AAYLM+IIIL++ F
Sbjct: 182 ASFILLLAVTPTVLSLLVMPLVRIYETSVADDKKHLNGLSAVSLIIAAYLMIIIILKNTF 241
Query: 249 ALPFLVRVLTLILLLLLLASPLYVAIRVQGSDSDRTSETSFCEEDELTDDPHEMHAEKMH 308
L ++TL+ LL++LA PL +A R Q ++T PH+
Sbjct: 242 GLSSWANIVTLVCLLVMLALPLLIARRAQRDGMEKTV-------------PHD------- 281
Query: 309 VRQDPVGYHRLPSEPDV---GTDTNDATTSLWGG---DLDLLQAICTLEFWILSFAMACG 362
Y L S P G +++ + + G DL+LLQA+ L FW+L AM CG
Sbjct: 282 -------YSPLISSPKATTSGNQSSEGDSKVEAGLSEDLNLLQAMKKLSFWLLFLAMICG 334
Query: 363 MGSGLATVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPL 422
MGSGL+T+NNI QIG SL YSS E +SL+SLWSIWNFLGRFGAGY SD LH K W RPL
Sbjct: 335 MGSGLSTINNIRQIGESLRYSSVEINSLVSLWSIWNFLGRFGAGYASDALLHKKGWPRPL 394
Query: 423 FMVITLAAMSIGHLIIASGLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFN 482
M TL MSIGHLIIASG G LY GS++VGVCYGSQWSLMPTI SE+FG+ MGTIFN
Sbjct: 395 LMAATLGTMSIGHLIIASGFQGNLYVGSVIVGVCYGSQWSLMPTITSELFGIRHMGTIFN 454
Query: 483 TITIANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSFFIMGSATLCGSLAAFGL 542
TI++A+P+GSYIFSVR++GYIYD+ ASGEGN C G+HCF LSF IM S G L A L
Sbjct: 455 TISVASPIGSYIFSVRLIGYIYDKTASGEGNTCYGSHCFRLSFIIMASVAFFGFLVAIVL 514
Query: 543 FLRTKRFYNEVILRRLLH 560
F RTK Y +++++RL H
Sbjct: 515 FFRTKTLYRQILVKRLHH 532
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15221382|ref|NP_177616.1| nodulin-like and major facilitator domain-containing protein [Arabidopsis thaliana] gi|5882744|gb|AAD55297.1|AC008263_28 Strong similarity to gb|AF031243 nodule-specific protein (Nlj70) from Lotus japonicus and is a member of the PF|00083 Sugar (and other) transporter family. EST gb|Z37715 comes from this gene [Arabidopsis thaliana] gi|332197510|gb|AEE35631.1| nodulin-like and major facilitator domain-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 606 bits (1563), Expect = e-170, Method: Compositional matrix adjust.
Identities = 317/558 (56%), Positives = 388/558 (69%), Gaps = 35/558 (6%)
Query: 9 LNTRWVSTVASIWIQCTSGSLYTFSIYSPALKTTQHYDQTTLDTVSVFKDIGANTGTLSG 68
L T+WV+ ASIWIQC SG+ YTF IYS LK+TQ YDQ+TLDTVSVFKDIGAN G SG
Sbjct: 4 LRTKWVAMTASIWIQCASGASYTFGIYSAVLKSTQSYDQSTLDTVSVFKDIGANAGVFSG 63
Query: 69 VLYTYSTSDHSSHHPRQQRLTRLLGPWVVLLVGAIQCFAGYFLMWASVVGLIPRPPVPVM 128
+LYTY+TS+ PWVVL VGAIQCFAGYFL+WASV GLI +PPVP+M
Sbjct: 64 LLYTYATSNRLRGRGGGIGGAGG--PWVVLAVGAIQCFAGYFLIWASVTGLIRKPPVPLM 121
Query: 129 CLFMLFAAHGMTFFNTADVVTSVRNFPTYSGTAVGIMKGFVGLSGAILIQVYQTFFNNKP 188
CLFM AA TFFNTA+VV++V NF Y GTAVGIMKGF+GLSGAILIQ+Y+T P
Sbjct: 122 CLFMFLAAQSQTFFNTANVVSAVENFADYGGTAVGIMKGFLGLSGAILIQLYETLCAGDP 181
Query: 189 TSYLLLLALLASIDPLLLMWFVRICNTNEGNEKKHLNSFSLIALIVAAYLMVIIILEHIF 248
S++LLLA+ ++ LL+M VRI T+ ++KKHLN S ++LI+AAYLM+IIIL++ F
Sbjct: 182 ASFILLLAVTPTVLSLLVMPLVRIYETSVADDKKHLNGLSAVSLIIAAYLMIIIILKNTF 241
Query: 249 ALPFLVRVLTLILLLLLLASPLYVAIRVQGSDSDRTSETSFCEEDELTDDPHEMHAEKMH 308
L ++TL+ LL++LA PL +A R Q ++T PH+
Sbjct: 242 GLSSWANIVTLVCLLVMLALPLLIARRAQRDGMEKTV-------------PHD------- 281
Query: 309 VRQDPVGYHRLPSEPDV---GTDTNDATTSLWGG---DLDLLQAICTLEFWILSFAMACG 362
Y L S P G +++ + + G +L+LLQA+ L FW+L AM CG
Sbjct: 282 -------YSPLISSPKATTSGNQSSEGDSKVEAGLSENLNLLQAMKKLSFWLLFLAMICG 334
Query: 363 MGSGLATVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPL 422
MGSGL+T+NNI QIG SL YSS E +SL+SLWSIWNFLGRFGAGY SD LH K W RPL
Sbjct: 335 MGSGLSTINNIRQIGESLRYSSVEINSLVSLWSIWNFLGRFGAGYASDALLHKKGWPRPL 394
Query: 423 FMVITLAAMSIGHLIIASGLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFN 482
M TL MSIGHLIIASG G LY GS++VGVCYGSQWSLMPTI SE+FG+ MGTIFN
Sbjct: 395 LMAATLGTMSIGHLIIASGFQGNLYVGSVIVGVCYGSQWSLMPTITSELFGIRHMGTIFN 454
Query: 483 TITIANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSFFIMGSATLCGSLAAFGL 542
TI++A+P+GSYIFSVR++GYIYD+ ASGEGN C G+HCF LSF IM S G L A L
Sbjct: 455 TISVASPIGSYIFSVRLIGYIYDKTASGEGNTCYGSHCFRLSFIIMASVAFFGFLVAIVL 514
Query: 543 FLRTKRFYNEVILRRLLH 560
F RTK Y +++++RL H
Sbjct: 515 FFRTKTLYRQILVKRLHH 532
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 564 | ||||||
| TAIR|locus:2027284 | 533 | AT1G74780 [Arabidopsis thalian | 0.439 | 0.465 | 0.614 | 9.3e-152 | |
| TAIR|locus:2011241 | 526 | AT1G18940 [Arabidopsis thalian | 0.388 | 0.416 | 0.618 | 2.7e-141 | |
| TAIR|locus:2040809 | 525 | AT2G34350 [Arabidopsis thalian | 0.406 | 0.436 | 0.609 | 8.1e-140 | |
| TAIR|locus:1005716659 | 523 | AT2G34355 [Arabidopsis thalian | 0.390 | 0.420 | 0.622 | 5.9e-135 | |
| TAIR|locus:2056103 | 601 | AT2G39210 "AT2G39210" [Arabido | 0.390 | 0.366 | 0.418 | 2.6e-89 | |
| TAIR|locus:2046238 | 577 | AT2G28120 [Arabidopsis thalian | 0.397 | 0.388 | 0.415 | 1.5e-81 | |
| TAIR|locus:2174683 | 579 | AT5G14120 [Arabidopsis thalian | 0.460 | 0.449 | 0.349 | 4e-81 | |
| TAIR|locus:2078643 | 584 | AT3G01930 [Arabidopsis thalian | 0.487 | 0.470 | 0.333 | 1e-80 | |
| TAIR|locus:2059829 | 546 | AT2G16660 [Arabidopsis thalian | 0.379 | 0.391 | 0.392 | 7e-76 | |
| TAIR|locus:2116855 | 567 | AT4G34950 [Arabidopsis thalian | 0.925 | 0.920 | 0.317 | 3.3e-70 |
| TAIR|locus:2027284 AT1G74780 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 807 (289.1 bits), Expect = 9.3e-152, Sum P(2) = 9.3e-152
Identities = 156/254 (61%), Positives = 185/254 (72%)
Query: 313 PVGYHRLPSEPDVGTDTNDAT---TSLWGG---DLDLLQAICTLEFWILSFAMACGMGSG 366
P Y L S P T N ++ + + G +L+LLQA+ L FW+L AM CGMGSG
Sbjct: 279 PHDYSPLISSPKATTSGNQSSEGDSKVEAGLSENLNLLQAMKKLSFWLLFLAMICGMGSG 338
Query: 367 LATVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVI 426
L+T+NNI QIG SL YSS E +SL+SLWSIWNFLGRFGAGY SD LH K W RPL M
Sbjct: 339 LSTINNIRQIGESLRYSSVEINSLVSLWSIWNFLGRFGAGYASDALLHKKGWPRPLLMAA 398
Query: 427 TLAAMSIGHLIIASGLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITI 486
TL MSIGHLIIASG G LY GS++VGVCYGSQWSLMPTI SE+FG+ MGTIFNTI++
Sbjct: 399 TLGTMSIGHLIIASGFQGNLYVGSVIVGVCYGSQWSLMPTITSELFGIRHMGTIFNTISV 458
Query: 487 ANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSFFIMGSATLCGSLAAFGLFLRT 546
A+P+GSYIFSVR++GYIYD+ ASGEGN C G+HCF LSF IM S G L A LF RT
Sbjct: 459 ASPIGSYIFSVRLIGYIYDKTASGEGNTCYGSHCFRLSFIIMASVAFFGFLVAIVLFFRT 518
Query: 547 KRFYNEVILRRLLH 560
K Y +++++RL H
Sbjct: 519 KTLYRQILVKRLHH 532
|
|
| TAIR|locus:2011241 AT1G18940 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 750 (269.1 bits), Expect = 2.7e-141, Sum P(2) = 2.7e-141
Identities = 136/220 (61%), Positives = 169/220 (76%)
Query: 341 LDLLQAICTLEFWILSFAMACGMGSGLATVNNISQIGGSLGYSSFETSSLISLWSIWNFL 400
L+LLQA+C ++FW+L AM CGMGSG++T+NNI QIG SL Y+S E +SL++LW+IWNF+
Sbjct: 306 LNLLQAMCNVDFWLLFLAMICGMGSGISTINNIRQIGESLRYTSVEINSLLALWNIWNFI 365
Query: 401 GRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIASGLPGALYAGSILVGVCYGSQ 460
GRFG GYVSD+ LH K W RPL M TL M+IGHLIIASG G LY GSI+VG+CYGSQ
Sbjct: 366 GRFGGGYVSDWLLHRKGWPRPLLMATTLGTMTIGHLIIASGFQGNLYPGSIIVGICYGSQ 425
Query: 461 WSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHC 520
WSLMPTI SE+FGV MGTI+NTI+IA+P+GSYIFSVR++GYIYDR GEGN C G HC
Sbjct: 426 WSLMPTITSELFGVKHMGTIYNTISIASPMGSYIFSVRLIGYIYDRTIIGEGNTCYGPHC 485
Query: 521 FMLSFFIMGSATLCGSLAAFGLFLRTKRFYNEVILRRLLH 560
F L++ ++ S G L + L RTK Y + I ++LH
Sbjct: 486 FRLAYVVIASVAFLGFLVSCVLVFRTKTIYRQ-IFEKILH 524
|
|
| TAIR|locus:2040809 AT2G34350 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 769 (275.8 bits), Expect = 8.1e-140, Sum P(2) = 8.1e-140
Identities = 142/233 (60%), Positives = 180/233 (77%)
Query: 327 TDTNDATTSLWGGDLDLLQAICTLEFWILSFAMACGMGSGLATVNNISQIGGSLGYSSFE 386
+D D T+ D+++L+AICT FW+L AM CGMGSGLAT+NNI Q+G SL YS+ +
Sbjct: 296 SDVKDVMTN----DMNVLEAICTTNFWLLFVAMICGMGSGLATINNIRQMGESLRYSTVQ 351
Query: 387 TSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIASGLPGAL 446
+SL+SLWSIWNFLGRFG+GY+SD +LH W RP+FM ITL M+IGH+++ASGL G+L
Sbjct: 352 LNSLVSLWSIWNFLGRFGSGYISDTYLHSHGWPRPVFMAITLGLMAIGHIVMASGLLGSL 411
Query: 447 YAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDR 506
Y GS+LVG+ YGSQWSLMPTI SEIFGVL MGTIF TI+IA+PVGSY FSV+V+GY+YD+
Sbjct: 412 YIGSLLVGLAYGSQWSLMPTITSEIFGVLHMGTIFYTISIASPVGSYFFSVKVIGYLYDK 471
Query: 507 EASGEGNKCTGTHCFMLSFFIMGSATLCGSLAAFGLFLRTKRFYNEVILRRLL 559
AS + + C G HCF SF IM + L GSL A L LRTK+FY ++ +R+L
Sbjct: 472 VASEDDHSCYGNHCFRTSFLIMAAMALLGSLVALVLLLRTKKFYATLVAKRIL 524
|
|
| TAIR|locus:1005716659 AT2G34355 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 747 (268.0 bits), Expect = 5.9e-135, Sum P(2) = 5.9e-135
Identities = 137/220 (62%), Positives = 169/220 (76%)
Query: 340 DLDLLQAICTLEFWILSFAMACGMGSGLATVNNISQIGGSLGYSSFETSSLISLWSIWNF 399
D ++L+A+ T+ FW+L AM CGMGSG ATVNN+ QIG SL YSS + +SL+SLWSIWNF
Sbjct: 303 DSNILEAMSTVNFWLLFLAMLCGMGSGFATVNNMRQIGESLRYSSVQLNSLVSLWSIWNF 362
Query: 400 LGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIASGLPGALYAGSILVGVCYGS 459
LGRFGAGYVSD FLH W RP+FM ITL M+IGH+I+ASG+ G+LYAGS+L+G+ YGS
Sbjct: 363 LGRFGAGYVSDTFLHKHSWPRPIFMAITLGVMAIGHIIVASGVQGSLYAGSVLIGMAYGS 422
Query: 460 QWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASGEGNKCTGTH 519
QWSLMPTI SEIFG+ MGTI+ TI+IA P+GSYI SV+V+GY YD+ AS + N C G+
Sbjct: 423 QWSLMPTITSEIFGIRHMGTIYFTISIAGPIGSYILSVKVIGYFYDKVASEDDNSCFGSQ 482
Query: 520 CFMLSFFIMGSATLCGSLAAFGLFLRTKRFYNEVILRRLL 559
CF SF IM S L GSL A LF RT +FY ++ +R L
Sbjct: 483 CFRTSFMIMASVALFGSLVASVLFFRTHKFYKNLVAKRNL 522
|
|
| TAIR|locus:2056103 AT2G39210 "AT2G39210" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 488 (176.8 bits), Expect = 2.6e-89, Sum P(3) = 2.6e-89
Identities = 97/232 (41%), Positives = 141/232 (60%)
Query: 338 GGDLDLLQAICTLEFWILSFAMACGMGSGLATVNNISQIGGSLGYSSFETSSLISLWSIW 397
G D +LQA+ +++ IL A CG+G L ++N+ QIG SLGY S+ +SL SIW
Sbjct: 331 GDDYTILQALFSVDMLILFLATICGVGGTLTAIDNLGQIGNSLGYPKRSVSTFVSLVSIW 390
Query: 398 NFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIASGLPGALYAGSILVGVCY 457
N+ GR +G VS+ FL ++ RPL + + L GHL+IA +PG LY S+++G C+
Sbjct: 391 NYYGRVVSGVVSEIFLIKYKFPRPLMLTMVLLLSCAGHLLIAFNVPGGLYVASVIIGFCF 450
Query: 458 GSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREAS-------- 509
G+QW L+ I SEIFG+ T++N ++A+P+GSY+ +VRV GY+YD EA
Sbjct: 451 GAQWPLLFAIISEIFGLKYYSTLYNFGSVASPIGSYLLNVRVAGYLYDVEAGKQYKALGK 510
Query: 510 ----GEGNKCTGTHCFMLSFFIMGSATLCGSLAAFGLFLRTKRFYNEVILRR 557
G+ C GT CF LSF I+ + TL G L + L +RTK+FY I ++
Sbjct: 511 TRVEGQDLNCIGTSCFKLSFIIIAAVTLFGVLVSMVLVIRTKKFYKSDIYKK 562
|
|
| TAIR|locus:2046238 AT2G28120 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 458 (166.3 bits), Expect = 1.5e-81, Sum P(3) = 1.5e-81
Identities = 98/236 (41%), Positives = 140/236 (59%)
Query: 338 GGDLDLLQAICTLEFWILSFAMACGMGSGLATVNNISQIGGSLGYSSFETSSLISLWSIW 397
G D +LQA+ + + IL A CG+GS L V+N+ QIG SLGY + SS +SL SIW
Sbjct: 322 GEDYTILQALLSTDMIILFVATFCGLGSSLTAVDNLGQIGESLGYPNHTVSSFVSLVSIW 381
Query: 398 NFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIASGLPGALYAGSILVGVCY 457
N+ GR +G+VS+Y L + RPL M + L GHL+IA +PG++Y SIL+G +
Sbjct: 382 NYFGRVFSGFVSEYLLAKYKLPRPLMMTLVLLLSCAGHLLIAFPVPGSVYIASILMGFSF 441
Query: 458 GSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREA------SGE 511
G+Q L+ I SE+FG+ T+FN +A+P+GSYI +VRV G +YD+EA G
Sbjct: 442 GAQLPLLFAIISELFGLKYYSTLFNCGQLASPLGSYILNVRVTGMLYDKEALKQLTARGL 501
Query: 512 GNK------CTGTHCFMLSFFIMGSATLCGSLAAFGLFLRTKRFYNEVILRRLLHS 561
K C G+ C+ L F I+ + T G+L + GL +RT+ FY I ++ S
Sbjct: 502 TRKDVKDLTCLGSQCYKLPFLILAAVTFFGALVSLGLAIRTREFYKGDIYKKFRES 557
|
|
| TAIR|locus:2174683 AT5G14120 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 461 (167.3 bits), Expect = 4.0e-81, Sum P(3) = 4.0e-81
Identities = 95/272 (34%), Positives = 148/272 (54%)
Query: 292 EDELTDDPHEMHAEKMHVRQDPVGYHRLPSEPDVGTDTNDATTSLWGGDLDLLQAICTLE 351
EDE D + A + H R + + + + N G D L QA+ +
Sbjct: 304 EDEKPKDVDLLPASERHKRIAHLQAQLMQAAAEGAVRVNRRRGPHRGEDFTLTQALVKAD 363
Query: 352 FWILSFAMACGMGSGLATVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDY 411
FW++ F++ G GSGL ++N+ Q+ SLGY + T L+S+ SIWNFLGR G GY S+
Sbjct: 364 FWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDN--THVLVSMISIWNFLGRIGGGYFSEL 421
Query: 412 FLHVKEWARPLFMVITLAAMSIGHLIIASGLPGALYAGSILVGVCYGSQWSLMPTIASEI 471
+ + RP+ M + MS+GH+ A G PGA+Y G++L+G+ YG+ W+++P ASE+
Sbjct: 422 VVRDYAYPRPVAMAVAQLIMSVGHIFFAYGWPGAMYIGTLLIGLGYGAHWAIVPATASEL 481
Query: 472 FGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASGEGN----------KCTGTHCF 521
FG+ + G ++N +T+ANP GS +FS + IYDREA + + +C G+ CF
Sbjct: 482 FGLKKFGALYNFLTLANPAGSLVFSGMIASSIYDREAERQAHGSVFDPDDALRCNGSICF 541
Query: 522 MLSFFIMGSATLCGSLAAFGLFLRTKRFYNEV 553
L+ IM + + + L RTK Y +
Sbjct: 542 FLTSLIMSGFCIIACMLSMILVRRTKSVYTHL 573
|
|
| TAIR|locus:2078643 AT3G01930 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 444 (161.4 bits), Expect = 1.0e-80, Sum P(3) = 1.0e-80
Identities = 96/288 (33%), Positives = 153/288 (53%)
Query: 277 QGSDSDRTSETSFCE-EDELTDDPHEMHAEKMHVRQDPVGYHRLPSEPDVGTDTNDATTS 335
Q + D E F E EDE + + A + H R + + + +
Sbjct: 293 QSTTPDHGPELIFSEVEDEKPKEVDLLPAVERHKRIAQLQAKLMQAAAEGAVRVKRRRGP 352
Query: 336 LWGGDLDLLQAICTLEFWILSFAMACGMGSGLATVNNISQIGGSLGYSSFETSSLISLWS 395
G D L QA+ +FW++ F++ G GSGL ++N+ Q+ SLGY + T +S+ S
Sbjct: 353 HRGEDFTLTQALVKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDN--THVFVSMIS 410
Query: 396 IWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIASGLPGALYAGSILVGV 455
IWNFLGR G GY S+ + + RP+ + + MS+GH+ A G PGA++ G++L+G+
Sbjct: 411 IWNFLGRIGGGYFSELIVRDYAYPRPVAIAVAQLVMSVGHIFFAYGWPGAMHIGTLLIGL 470
Query: 456 CYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREAS--GEGN 513
YG+ W+++P ASE+FG+ + G ++N +T+ANP GS +FS + IYDREA +G+
Sbjct: 471 GYGAHWAIVPATASELFGLKKFGALYNFLTLANPAGSLVFSGLIASSIYDREAERQAQGS 530
Query: 514 --------KCTGTHCFMLSFFIMGSATLCGSLAAFGLFLRTKRFYNEV 553
+C G+ C+ L+ IM L + + L RTK Y +
Sbjct: 531 LFNPDDVLRCRGSICYFLTSLIMSGFCLIAAALSMILVQRTKPVYTNL 578
|
|
| TAIR|locus:2059829 AT2G16660 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 452 (164.2 bits), Expect = 7.0e-76, Sum P(3) = 7.0e-76
Identities = 86/219 (39%), Positives = 139/219 (63%)
Query: 338 GGDLDLLQAICTLEFWILSFAMACGMGSGLATVNNISQIGGSLGYSSFETSSLISLWSIW 397
G D +++A+ T++FW+L + CG+G+GLA +NN+ QIG +LGY++ S +S+ SIW
Sbjct: 316 GEDHTIMEAVLTVDFWVLFVSFLCGVGTGLAVMNNMGQIGLALGYTN--VSIFVSMTSIW 373
Query: 398 NFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIASGLPGALYAGSILVGVCY 457
F GR +G +S+YFL RPL+ + M++G++++A +P +LY GS++VGVCY
Sbjct: 374 GFFGRILSGTLSEYFLKKAGTPRPLWNAASQILMAVGYILMALAVPNSLYIGSMVVGVCY 433
Query: 458 GSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREAS---GEGNK 514
G + ++ ASE+FG+ G I+N + + P+GS++FS + G++YD EA+ G GN
Sbjct: 434 GVRLAITVPTASELFGLKYYGLIYNILVLNLPLGSFLFSGLLAGFLYDAEATPTPGGGNT 493
Query: 515 CTGTHCFMLSFFIMGSATLCGSLAAFGLFLRTKRFYNEV 553
C G HC+ L F +M A++ G L RTK Y ++
Sbjct: 494 CVGAHCYRLIFIVMALASVIGVGLDLVLAYRTKEIYAKI 532
|
|
| TAIR|locus:2116855 AT4G34950 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 711 (255.3 bits), Expect = 3.3e-70, P = 3.3e-70
Identities = 177/558 (31%), Positives = 284/558 (50%)
Query: 12 RWVSTVASIWIQCTSGSLYTFSIYSPALKTTQHYDQTTLDTVSVFKDIGANTGTLSGVLX 71
+W+ V ++W+Q SG+ YTFS YS ALK+ + Q L+++SV KD+G G L+G+
Sbjct: 16 KWLGFVTAVWVQSISGNNYTFSNYSGALKSLMNLTQLELNSLSVAKDVGKAFGILAGLAS 75
Query: 72 XXXXXXXXXXXPRQQRLTRLLGPWVVLLVGAIQCFAGYFLMWASVVGLIPRPPVPVMCLF 131
RL P V+LL+G+ + GY + W V I P MC+F
Sbjct: 76 D-----------------RLSTP-VILLIGSFEGLLGYGVQWLVVSRTIQPIPYWQMCVF 117
Query: 132 MLFAAHGMTFFNTADVVTSVRNFPTYSGTAVGIMKGFVGLSGAILIQVYQTFFNNKPTSY 191
+ + T+ NTA +VT +RNF G GI+KG+VGLS AI + F++ P S+
Sbjct: 118 LCMGGNSTTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCNALFSSDPASF 177
Query: 192 XXXXXXXXXXXXXXXMWFVRIC--NTN--EGNEK-KHLNSFSLIALIVAAYLM---VIII 243
++F+R +T E NE+ K+ F+++A++VA YL +I I
Sbjct: 178 LVLLSVVPFAVCLTAVFFLREIPPSTTFAEDNEESKYFAVFNIVAVVVAVYLQSYDIIGI 237
Query: 244 LEHIFAXXXXXXXXXXXXXXXXXXXXXYVAIRVQGSDS--DRTSETSFCEEDELTDDPHE 301
F+ ++ +V R E E+ +
Sbjct: 238 KTGAFSIAFASILLILLASPVAVPFHAFIRSKVHDEQDVEGRIDEPLLRSGSEIEVEETI 297
Query: 302 MHAEKMHVRQDPVGYHRLPSEPDV--GTD-TNDATTSLWGGDLDLLQAICTLEFWILSFA 358
+ A + P L +E + GT T + + G + +++A+ T++FW+L +
Sbjct: 298 VGAAAAADNELPPSLKPLSNEEEENHGTIVTTEKKRPVLGEEHTIMEAMLTVDFWVLFVS 357
Query: 359 MACGMGSGLATVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEW 418
CG+G+GLA +NN+ QIG +LGY+ + S +S+ SIW F GR +G +S++F+
Sbjct: 358 FLCGVGTGLAVMNNMGQIGLALGYT--DVSIFVSMTSIWGFFGRILSGTISEHFIKKAGT 415
Query: 419 ARPLFMVITLAAMSIGHLIIASGLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMG 478
RPL+ M++G+L++A LPG+LY GS++VGVCYG + ++ ASE+FG+ G
Sbjct: 416 PRPLWNAAAQIIMAVGYLLMALALPGSLYIGSMVVGVCYGVRLAITVPTASELFGLKYYG 475
Query: 479 TIFNTITIANPVGSYIFSVRVVGYIYDREAS---GEGNKCTGTHCFMLSFFIMGSATLCG 535
I+N + + P+GS++FS + G +YD EA+ G GN C G HCF + F +M A++ G
Sbjct: 476 LIYNILILNMPLGSFLFSGLLAGLLYDAEATPTPGGGNTCVGAHCFRIVFIVMAFASIIG 535
Query: 536 SLAAFGLFLRTKRFYNEV 553
L RTK Y ++
Sbjct: 536 VGLDLLLAYRTKGIYAKI 553
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 564 | |||
| pfam06813 | 248 | pfam06813, Nodulin-like, Nodulin-like | 3e-71 | |
| TIGR00890 | 377 | TIGR00890, 2A0111, oxalate/formate antiporter fami | 4e-12 | |
| PTZ00207 | 591 | PTZ00207, PTZ00207, hypothetical protein; Provisio | 3e-07 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 7e-06 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 2e-05 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 1e-04 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 8e-04 |
| >gnl|CDD|219187 pfam06813, Nodulin-like, Nodulin-like | Back alignment and domain information |
|---|
Score = 228 bits (583), Expect = 3e-71
Identities = 102/266 (38%), Positives = 147/266 (55%), Gaps = 21/266 (7%)
Query: 12 RWVSTVASIWIQCTSGSLYTFSIYSPALKTTQHYDQTTLDTVSVFKDIGANTGTLSGVLY 71
RW+ VA+IWIQ +G+ Y FS+YS ALK++ Y Q L+ + V KD+G N G LSG+
Sbjct: 1 RWLGLVAAIWIQSFAGANYDFSLYSSALKSSLGYSQVQLNLLGVAKDLGKNFGWLSGLAA 60
Query: 72 TYSTSDHSSHHPRQQRLTRLLGPWVVLLVGAIQCFAGYFLMWASVVGLIPRPPVPVMCLF 131
Y L PWVVLLVGA F GY + W +V G IP P ++CL
Sbjct: 61 EY------------------LPPWVVLLVGAAMGFVGYGVQWLAVTGKIPGLPYWLLCLA 102
Query: 132 MLFAAHGMTFFNTADVVTSVRNFPTYSGTAVGIMKGFVGLSGAILIQVYQTFFNNKPTSY 191
+ A + + +FNTA +VT +RNFP G +GI+KG+ GLS AI Q+Y F N +S
Sbjct: 103 ICLAGNSICWFNTASLVTCIRNFPESRGVVLGILKGYAGLSAAIYTQLYTAIFGNDASSL 162
Query: 192 LLLLALLASIDPLLLMWFVRICN---TNEGNEKKHLNSFSLIALIVAAYLMVIIILEHIF 248
LLL AL+ + L+ ++F+R C + +E F+++++ +A YL+ + IL F
Sbjct: 163 LLLNALVPLVVSLVALYFIRPCPGKVGEQRSESVVFLVFNVLSVALAVYLVAMSILSKSF 222
Query: 249 ALPFLVRVLTLILLLLLLASPLYVAI 274
L +++LLL PL V I
Sbjct: 223 DLSSAEYYALGAIMVLLLLVPLAVPI 248
|
This family represents a conserved region within plant nodulin-like proteins. Length = 248 |
| >gnl|CDD|233171 TIGR00890, 2A0111, oxalate/formate antiporter family transporter | Back alignment and domain information |
|---|
Score = 67.9 bits (166), Expect = 4e-12
Identities = 42/166 (25%), Positives = 63/166 (37%), Gaps = 13/166 (7%)
Query: 338 GGDLDLLQAICTLEFWILSFAMACGMGSGLATVNNISQIGGSLGYSSFETSSLISLWSIW 397
D + + + T +FW+L + SGL + G SLG S +S+ SI+
Sbjct: 193 VKDYTVWEMLRTPQFWVLYLSFFLNAVSGLLLIGLYKPYGQSLGLSDGFLVLAVSISSIF 252
Query: 398 NFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIASGLP---GALYAGSILVG 454
N GR G +SD R M I ++G + A LV
Sbjct: 253 NGGGRPFLGALSDK------IGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALVF 306
Query: 455 VCYGSQWSLMPTIASEIFG----VLQMGTIFNTITIANPVGSYIFS 496
+G SL P++ S+IFG G ++ +A G I S
Sbjct: 307 FTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIAS 352
|
This subfamily belongs to the major facilitator family. Members include the oxalate/formate antiporter of Oxalobacter formigenes, where one substrate is decarboxylated in the cytosol into the other to consume a proton and drive an ion gradient [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 377 |
| >gnl|CDD|140234 PTZ00207, PTZ00207, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 3e-07
Identities = 70/311 (22%), Positives = 117/311 (37%), Gaps = 61/311 (19%)
Query: 24 CTSGSLYTFSIYSPALKTTQHYDQTTLDTVSVFKDIGANTGTLS---GVLYTYSTSDHSS 80
CTS +Y F++ S A++ + Q L T++ +G G +Y Y
Sbjct: 39 CTS-FMYAFNLISGAMQARYNLTQRDLSTITT---VGIAVGYFLLPYSFIYDY------- 87
Query: 81 HHPRQQRLTRLLGPWVVLLVGAIQCFAGYFLMWASVVGLIPRPPVPVMCLFMLFAAHGMT 140
LGP + ++ + F L++A + V + ++ G
Sbjct: 88 -----------LGPRPIFVLS-MTVFCLGTLLFALTFQEVIEGSVVRLSVYNGLMTLGCM 135
Query: 141 FFNTADVVTSVRNFPTYSGTAVGIMKGFVGLSGAILIQVYQTFFNNKPTSYLLLLALLAS 200
F+ VVT + FP+ G V IMK F GL AIL + FF++ ++Y L A
Sbjct: 136 LFDLGAVVTVLSVFPSNRGAVVAIMKTFTGLGSAILGSIQLAFFSDNTSAYFFFLMSFAL 195
Query: 201 IDPLLLMWFVRICNTN-EGNEKKHLNSFS---------------------------LIAL 232
+ +L + F+R+ + G ++KHL+ LI L
Sbjct: 196 VVGILAIVFMRLPPFHLTGYQEKHLDEEEKAQRLMRKGVYLKQKAPMWRFVYGFVILIIL 255
Query: 233 IV----AAYLMVIIILEHIFALPFLVRVLTLILLLLLLASPLYVAIRVQGSDSDRTSETS 288
IV L+ + L F + F V V+ L ++ +A PL G S+
Sbjct: 256 IVFLPLQGALVAYLKLGSNFKVGFAVTVIVLTVIFPFMAFPL---TTFDGKRPHDDSDGK 312
Query: 289 FCEEDELTDDP 299
E E ++
Sbjct: 313 AKEHVEAGEEV 323
|
Length = 591 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 7e-06
Identities = 40/194 (20%), Positives = 71/194 (36%), Gaps = 20/194 (10%)
Query: 352 FWILSFAMACGMGSGLATVNNISQIGGS-LGYSSFETSSLISLWSIWNFLGRFGAGYVSD 410
+L+ A + + LG S+ E L+SL+ + LG G +SD
Sbjct: 177 LLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSD 236
Query: 411 YFLHVKEWARPLFMVITLAAMSIGHLIIA-SGLPGALYAGSILVGVCYGSQWSLMPTIAS 469
R L ++I L ++G L++A + L +L+G G + + T+AS
Sbjct: 237 RLGR-----RRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLAS 291
Query: 470 EIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSFFIMG 529
E+ GT +G + + + G + D T + F I+
Sbjct: 292 ELAPPEARGTASGLFNTFGSLGGALGPL-LAGLLLD------------TGGYGGVFLILA 338
Query: 530 SATLCGSLAAFGLF 543
+ L +L L
Sbjct: 339 ALALLAALLLLLLP 352
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 2e-05
Identities = 29/155 (18%), Positives = 61/155 (39%), Gaps = 8/155 (5%)
Query: 352 FWILSFAMACGMGSGLATVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDY 411
+L + + LG S+ + ++S +S+ LG AGY+SD
Sbjct: 1 LLLLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDR 60
Query: 412 FLHVKEWARPLFMVITLAAMSIGHLIIA-SGLPGALYAGSILVGVCYGSQWSLMPTIASE 470
F R +++ L ++G L++A + L G L+G+ G+ + + +E
Sbjct: 61 FG------RRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAE 114
Query: 471 IFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYD 505
F + G + +G+ + + G + +
Sbjct: 115 WFPPKERGRALGLFSAGFGLGA-LLGPLLGGLLAE 148
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 1e-04
Identities = 27/172 (15%), Positives = 58/172 (33%), Gaps = 4/172 (2%)
Query: 322 EPDVGTDTNDATTSLWGGDLDLLQAICTLEFWILSFAMACGMGSGLATVNNISQIGGSLG 381
P + + + + L A+ + A + + LG
Sbjct: 174 RPPPESKRPKPAEEAPAPLVPAWKLLLRDPVLWLLLALLLFGFAFFALLTYLPLYQEVLG 233
Query: 382 YSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIA-S 440
S+ L+ L + +GR G +SD + R L ++ L ++G +++ +
Sbjct: 234 LSALLAGLLLGLAGLLGAIGRLLLGRLSD---RLGRRRRLLLALLLLILAALGLALLSLT 290
Query: 441 GLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGS 492
L +L+G G + + + S++ + GT A +G
Sbjct: 291 ESSLWLLVALLLLGFGAGLVFPALNALVSDLAPKEERGTASGLYNTAGSLGG 342
|
Length = 346 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 8e-04
Identities = 29/149 (19%), Positives = 59/149 (39%), Gaps = 8/149 (5%)
Query: 358 AMACGMGSGLATVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKE 417
A G+G L + LG S E L++ +S+ L + AG +SD F
Sbjct: 5 AFLAGLGRSLLGPALPLYLAEDLGISPTEIGLLLTAFSLGYALAQPLAGRLSDRF----- 59
Query: 418 WARPLFMVITLAAMSIGHLIIASGLP-GALYAGSILVGVCYGSQWSLMPTIASEIFGVLQ 476
R ++I L ++G L++ L +L G+ G+ + + ++ F +
Sbjct: 60 -GRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGGGALFPAAAALIADWFPPEE 118
Query: 477 MGTIFNTITIANPVGSYIFSVRVVGYIYD 505
G ++ +G+ + + + G +
Sbjct: 119 RGRALGLLSAGFGLGAALGPL-LGGLLAS 146
|
Length = 346 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 564 | |||
| PTZ00207 | 591 | hypothetical protein; Provisional | 100.0 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 100.0 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 99.95 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.95 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.91 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.91 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.9 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.88 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.88 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.88 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.87 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.87 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.85 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.84 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.84 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.84 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.82 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.81 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.81 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.8 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.79 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.79 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.79 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.78 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.78 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.77 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.77 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.76 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.75 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.74 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.74 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.74 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.74 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.74 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.73 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.72 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.72 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.72 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.72 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.72 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.72 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.71 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.71 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.7 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.7 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.69 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.69 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.69 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.69 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.68 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.68 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.67 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.67 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.67 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.66 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.64 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.64 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.64 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.62 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.62 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.62 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.62 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.61 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.6 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.59 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.58 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.56 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.54 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.53 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.52 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.52 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.52 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.52 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.49 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.49 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 99.45 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.44 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 99.43 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.42 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.36 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.34 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 99.29 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 99.27 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 99.26 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.23 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 99.2 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.2 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.17 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 99.14 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.08 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 99.07 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.06 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.04 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.02 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 98.96 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 98.95 | |
| PRK10504 | 471 | putative transporter; Provisional | 98.95 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 98.9 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 98.89 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 98.89 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 98.85 | |
| PRK10054 | 395 | putative transporter; Provisional | 98.83 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 98.83 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 98.83 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 98.82 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 98.81 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 98.81 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 98.81 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 98.8 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 98.76 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 98.76 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 98.75 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 98.74 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 98.73 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 98.73 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 98.73 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 98.72 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 98.71 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 98.71 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 98.7 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 98.69 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 98.69 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 98.67 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 98.66 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 98.66 | |
| PRK03699 | 394 | putative transporter; Provisional | 98.66 | |
| PRK11043 | 401 | putative transporter; Provisional | 98.66 | |
| PRK11462 | 460 | putative transporter; Provisional | 98.65 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 98.63 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 98.63 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 98.63 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 98.62 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 98.62 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 98.61 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 98.6 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 98.59 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 98.58 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 98.57 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 98.55 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 98.55 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 98.55 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 98.54 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 98.54 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 98.53 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 98.53 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 98.52 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 98.52 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 98.52 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 98.52 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 98.51 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 98.49 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 98.48 | |
| PRK12382 | 392 | putative transporter; Provisional | 98.45 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 98.45 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 98.45 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 98.45 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 98.44 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 98.44 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 98.42 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 98.41 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 98.37 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 98.35 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 98.32 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 98.32 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 98.31 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 98.3 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 98.29 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 98.28 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 98.23 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 98.23 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 98.22 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 98.2 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 98.15 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 98.11 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 98.09 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 98.07 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 98.06 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 98.05 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 98.05 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 98.0 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 97.98 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 97.96 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 97.94 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 97.93 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 97.89 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 97.83 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 97.83 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 97.82 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 97.8 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 97.79 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 97.79 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 97.78 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 97.73 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 97.71 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 97.67 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 97.63 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 97.63 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 97.62 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 97.6 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 97.55 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 97.51 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 97.39 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 97.37 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 97.36 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 97.31 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 97.29 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 97.27 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 97.23 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 97.19 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 97.08 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 97.08 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 97.01 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 96.99 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 96.95 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 96.95 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 96.94 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 96.86 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 96.78 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 96.76 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 96.66 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 96.33 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 96.32 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 96.3 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 96.24 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 96.16 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 96.12 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 95.88 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 95.69 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 95.36 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 95.34 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 95.26 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 95.17 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 95.02 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 94.9 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 94.82 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 94.63 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 94.57 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 93.14 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 92.71 | |
| PRK11462 | 460 | putative transporter; Provisional | 92.7 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 91.73 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 91.4 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 91.35 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 91.01 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 90.73 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 90.39 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 90.37 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 90.35 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 89.82 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 88.12 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 85.39 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 85.16 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 84.92 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 84.45 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 81.94 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 80.35 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 80.3 |
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-76 Score=654.70 Aligned_cols=510 Identities=18% Similarity=0.258 Sum_probs=423.5
Q ss_pred chhHHHHHHHHHHHHhcCcccccccccHHHHhhcCCCcchhhHHHHhhhhhccccccchhhhccccCCCCCCCccchhhh
Q 008482 10 NTRWVSTVASIWIQCTSGSLYTFSIYSPALKTTQHYDQTTLDTVSVFKDIGANTGTLSGVLYTYSTSDHSSHHPRQQRLT 89 (564)
Q Consensus 10 ~~Rw~~l~a~~~i~l~~G~~Y~fS~ys~~L~~~lg~sq~~~~~i~~a~~vg~~~g~~~G~l~d~~~~~~~~~~~~~~~~~ 89 (564)
.+||+.++++++++.++|+.|.|++|+++|++++|+||+|++.++..+...+++.+++|.+.||+|
T Consensus 24 ~~Rw~~lva~~~~~~~~g~~y~fsv~s~~L~~~lgls~~~l~~i~svg~~~g~~~lp~G~L~Dr~G-------------- 89 (591)
T PTZ00207 24 PRRFALLVLGAFCSICTSFMYAFNLISGAMQARYNLTQRDLSTITTVGIAVGYFLLPYSFIYDYLG-------------- 89 (591)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------------
Confidence 689999999999999999999999999999999999999999887654444455668899999875
Q ss_pred cccCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHhhhcCCCCcceeeeehhhh
Q 008482 90 RLLGPWVVLLVGAIQCFAGYFLMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFPTYSGTAVGIMKGFV 169 (564)
Q Consensus 90 ~~~GP~~~~~iG~vl~~~Gy~~~~l~~~g~i~~~~~~~l~~~~~l~G~g~~~~~ta~l~t~~k~FP~~RG~a~Gl~~a~~ 169 (564)
||+++++|++++++||+++|+++++.+. .++|+++++.++.|+|.+++++++++++++|||++||+++|+.+++.
T Consensus 90 ----~R~vllig~ll~~iG~ll~ala~~~~i~-~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp~~RG~a~Gi~~~~~ 164 (591)
T PTZ00207 90 ----PRPIFVLSMTVFCLGTLLFALTFQEVIE-GSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFPSNRGAVVAIMKTFT 164 (591)
T ss_pred ----cHHHHHHHHHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhhhHHHHHHHHHHH
Confidence 9999999999999999999999888874 67999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhhhhheeeeeccCCC---------Ccccc-----------------c
Q 008482 170 GLSGAILIQVYQTFFNNKPTSYLLLLALLASIDPLLLMWFVRICNTNE---------GNEKK-----------------H 223 (564)
Q Consensus 170 GLsa~i~s~i~~~~f~~~~~~~llfla~~p~~~~~~~~~~i~~~~~~~---------~~~~~-----------------~ 223 (564)
|+|++++++++..++.++.+.+++++++.+.+++++.+.++|.+|++. ++|++ +
T Consensus 165 gLGsaI~~~l~~~l~~~~~~~~fl~l~vl~~vv~ll~~~~vr~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~q~~p~~~ 244 (591)
T PTZ00207 165 GLGSAILGSIQLAFFSDNTSAYFFFLMSFALVVGILAIVFMRLPPFHLTGYQEKHLDEEEKAQRLMRKGVYLKQKAPMWR 244 (591)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhheeCCcchhhcccccCCCHHHHHHHhhhhhhhhhcCCCcee
Confidence 999999999999999989999999999999999999999999887532 22222 5
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHH-HHHhhh-hhhhhhccCCCCCCCCcCccccCCCCCCCccc
Q 008482 224 LNSFSLIALIVAAYLMVIIILEHIFALPFLVRVLTLILLL-LLLASP-LYVAIRVQGSDSDRTSETSFCEEDELTDDPHE 301 (564)
Q Consensus 224 ~~~~~~~~i~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~-~ll~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (564)
|..+.++.+++++|+++.++++++.+++++.+...+++++ +++..| +.+|.+.... +.+ ++ ++++ ++..
T Consensus 245 f~~~~~i~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~v~~~lll~~p~l~ip~~~~~~-~~~-~~----~~~~--~~~~- 315 (591)
T PTZ00207 245 FVYGFVILIILIVFLPLQGALVAYLKLGSNFKVGFAVTVIVLTVIFPFMAFPLTTFDG-KRP-HD----DSDG--KAKE- 315 (591)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhhhHHHhcc-CCc-CC----Cccc--cccc-
Confidence 5556678889999999999999999999998888888776 777888 6566654111 111 10 0000 0000
Q ss_pred hhhhccccCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCcHHHHhhcHHHHHHHHHHHhhhhchhheecchhHHHhhc-
Q 008482 302 MHAEKMHVRQDPVGYHRLPSEPDVGTDTNDATTSLWGGDLDLLQAICTLEFWILSFAMACGMGSGLATVNNISQIGGSL- 380 (564)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~t~~Fwll~~~~~~~~g~gl~~i~n~~~i~~~~- 380 (564)
.. +.+++.. ..+....+++. +...|++++ |++|++++.|||++|++++|+.|+|+.++||++||.+++
T Consensus 316 ----~~--~~~~~~~--~~~~~~~~~~~-~~~~P~~~~--t~~q~l~~~d~Wll~~~~~cg~g~gl~~~~N~~qI~~sl~ 384 (591)
T PTZ00207 316 ----HV--EAGEEVS--AAEDKVVETDV-DYIAPQFQE--TFIEGLKTARLWCLLWSIFCCVGAHFVIIFNARFIYTALA 384 (591)
T ss_pred ----cc--ccccccc--ccccccccccc-cCCCCCCcc--hHHHHHhchhHHHHHHHHHHhhCchheeeecHHHHHHHhc
Confidence 00 0000000 00000000000 112245544 999999999999999999999999999999999999999
Q ss_pred CCCccc--hhHHHHHHHHHHHHhhhhhhhhhhhhhhccc---CchhHHHHHHHHHHHHHHHHHHhcCc-chHHHHHHHHH
Q 008482 381 GYSSFE--TSSLISLWSIWNFLGRFGAGYVSDYFLHVKE---WARPLFMVITLAAMSIGHLIIASGLP-GALYAGSILVG 454 (564)
Q Consensus 381 g~~~~~--aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~---~~R~~~l~~~~~l~~i~~ll~~~~~~-~~l~~~~~l~G 454 (564)
|+++.. ...+|+++|++|++||+++|++|.++.+|+. +||+.++.+..+ +.+++++++...| ..|+++++++|
T Consensus 385 g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~~~~~~~~~~r~prt~~l~~~~~-~~~~~lll~~~~p~~~L~~~~~lvg 463 (591)
T PTZ00207 385 GEAPDDALNTLLTVLNGVGSAVGRLCMSYFEIWSQKRRAEDRVPITIALFIPSV-CIITMLTLFLTLPKAALPLPYFIAA 463 (591)
T ss_pred CCCCCccceeeehhhhhHHHHhhHHHHHHHHHHHHhhccccccchhHHHHHHHH-HHHHHHHHHHHCCccHhHHHHHHHH
Confidence 874333 2338999999999999999999955544442 899999999888 8888888777777 78999999999
Q ss_pred hhhccccchhHHHHHHhhccCchhhhhhhHhhhhhhHHHhhhhhhhhhhhhcccCCC-CccccCCcccHHHHHHHHHHHH
Q 008482 455 VCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASGE-GNKCTGTHCFMLSFFIMGSATL 533 (564)
Q Consensus 455 ~~~G~~~~~~P~ivse~FG~k~fg~nyg~~~~a~~iG~~lf~~~l~g~iyD~~~~~~-~~~C~G~~Cy~~af~i~~~l~v 533 (564)
+|||..|++.|++++|+|| ||||+|||+++++.++|+++||..++|.+||+++.++ +.+|.|++||+.+|++++++|+
T Consensus 464 ~~~G~~~~~~~~i~selFg-k~~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k~~~~~C~G~~C~~~~~~v~~~~~~ 542 (591)
T PTZ00207 464 FANGFMAATIALVTRTIFA-KDPAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQADKLGQDVCTERVCVVMPLAFLLGLSF 542 (591)
T ss_pred HHhhHhHHHHHHHHHHHhc-cchHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCCceeeHhHHHHHHHHHH
Confidence 9999999999999999999 9999999999999999999999999999999999775 5699999999999999999999
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHhhhc
Q 008482 534 CGSLAAFGLFLRTKRFYNEVILRRLLH 560 (564)
Q Consensus 534 ~a~vl~~~l~~r~~~~~~~~~~~~~~~ 560 (564)
+|+++++++|+|+||+|++.+++|+|.
T Consensus 543 ~g~~~s~~l~~R~r~~y~~~~~~~~~~ 569 (591)
T PTZ00207 543 LAFITSTYVHLQYRRLCLKALEERRRI 569 (591)
T ss_pred HHHHHHhheeeehHHHHHHHHHHHHHH
Confidence 999999999999999999988777654
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-53 Score=421.78 Aligned_cols=244 Identities=49% Similarity=0.834 Sum_probs=233.0
Q ss_pred hHHHHHHHHHHHHhcCcccccccccHHHHhhcCCCcchhhHHHHhhhhhccccccchhhhccccCCCCCCCccchhhhcc
Q 008482 12 RWVSTVASIWIQCTSGSLYTFSIYSPALKTTQHYDQTTLDTVSVFKDIGANTGTLSGVLYTYSTSDHSSHHPRQQRLTRL 91 (564)
Q Consensus 12 Rw~~l~a~~~i~l~~G~~Y~fS~ys~~L~~~lg~sq~~~~~i~~a~~vg~~~g~~~G~l~d~~~~~~~~~~~~~~~~~~~ 91 (564)
||+++++++|+|+++|++|.||+||||||+++|+||+|+|++++++|+|.++|+++|+++|++|
T Consensus 1 rW~~l~a~~~v~~~~Gt~Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~G~~~G~l~d~~g---------------- 64 (250)
T PF06813_consen 1 RWLSLVASIWVQLCSGTTYTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYFGILAGLLYDRFG---------------- 64 (250)
T ss_pred ChhhHHHHHHHHHhcCcccchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhccHHHHHHHHhcc----------------
Confidence 8999999999999999999999999999999999999999999999999999999999999986
Q ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHhhhcCCCCcceeeeehhhhhh
Q 008482 92 LGPWVVLLVGAIQCFAGYFLMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFPTYSGTAVGIMKGFVGL 171 (564)
Q Consensus 92 ~GP~~~~~iG~vl~~~Gy~~~~l~~~g~i~~~~~~~l~~~~~l~G~g~~~~~ta~l~t~~k~FP~~RG~a~Gl~~a~~GL 171 (564)
||.++++|+++.++||+++|+++++.++++++|++|+|.+++|+|++|+||++++||+||||++||+|+|++|+++||
T Consensus 65 --p~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~~RG~vvgilk~~~GL 142 (250)
T PF06813_consen 65 --PWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPRSRGTVVGILKGFFGL 142 (250)
T ss_pred --hHHHHHHHHHHHHHHHHHHHHHHhCccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCccccCceehhhhHHHHh
Confidence 999999999999999999999999999878999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhhhhheeeeeccCC-----CCcccccchhHHHHHHHHHHHHHHHHHHhh
Q 008482 172 SGAILIQVYQTFFNNKPTSYLLLLALLASIDPLLLMWFVRICNTN-----EGNEKKHLNSFSLIALIVAAYLMVIIILEH 246 (564)
Q Consensus 172 sa~i~s~i~~~~f~~~~~~~llfla~~p~~~~~~~~~~i~~~~~~-----~~~~~~~~~~~~~~~i~~~~y~~~~~~~~~ 246 (564)
||+|++++|+++|++|+++|++|+++.|..+++++++++|++|.+ +++|+++|..+..+.+.+++|+++++++++
T Consensus 143 Saai~t~i~~~~f~~~~~~fll~la~~~~~v~l~~~~~vr~~~~~~~~~~~~~~~~~F~~~~~i~l~la~yLl~~~i~~~ 222 (250)
T PF06813_consen 143 SAAIFTQIYSAFFGDDPSSFLLFLAVLPAVVCLVAMFFVRPVPPSPSRTRQPSESKRFLFFFAIALALAIYLLVISILQN 222 (250)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHhhheeccCCccccccCcchhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999998753 257777787778888999999999999999
Q ss_pred hccCchHHHHHHHHHHHHHHhhhhhhh
Q 008482 247 IFALPFLVRVLTLILLLLLLASPLYVA 273 (564)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~ll~~p~~~~ 273 (564)
+.++++..+....+++++++.+|+.++
T Consensus 223 ~~~~s~~~~~~~~~il~llL~~Pl~i~ 249 (250)
T PF06813_consen 223 FVKLSRAARVIFAVILLLLLLLPLAIP 249 (250)
T ss_pred ccCCCHHHHHHHHHHHHHHHHhhhhcc
Confidence 999999999998889889999998764
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-27 Score=263.07 Aligned_cols=423 Identities=17% Similarity=0.221 Sum_probs=292.1
Q ss_pred hHHHHHHHHHHH-HhcCcccccccccHHHHhhcCCCcchhhHHHHhhh-hhccccccchhhhccccCCCCCCCccchhhh
Q 008482 12 RWVSTVASIWIQ-CTSGSLYTFSIYSPALKTTQHYDQTTLDTVSVFKD-IGANTGTLSGVLYTYSTSDHSSHHPRQQRLT 89 (564)
Q Consensus 12 Rw~~l~a~~~i~-l~~G~~Y~fS~ys~~L~~~lg~sq~~~~~i~~a~~-vg~~~g~~~G~l~d~~~~~~~~~~~~~~~~~ 89 (564)
-|.+.+++.+++ .+-|..++++++-+.+++.++-+.+|++.++.... +....|.+.+.+.||+|
T Consensus 44 gWvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg-------------- 109 (509)
T KOG2504|consen 44 GWVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFG-------------- 109 (509)
T ss_pred eeeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcC--------------
Confidence 488888887776 67799999999999999999999999886643333 33334888999999875
Q ss_pred cccCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHH-HHHHHHhhhhhhhhHHHHHHHhhhcCCCCcceeeeehhh
Q 008482 90 RLLGPWVVLLVGAIQCFAGYFLMWASVVGLIPRPPVPVMC-LFMLFAAHGMTFFNTADVVTSVRNFPTYSGTAVGIMKGF 168 (564)
Q Consensus 90 ~~~GP~~~~~iG~vl~~~Gy~~~~l~~~g~i~~~~~~~l~-~~~~l~G~g~~~~~ta~l~t~~k~FP~~RG~a~Gl~~a~ 168 (564)
.|.+.++|+++.++|+++ +.+. .++|+++ .|+++.|+|.++.|..+++...++|++||++|+|+..++
T Consensus 110 ----~R~v~i~G~~v~~~g~~l-----ssF~--~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~kkR~lA~Gia~~G 178 (509)
T KOG2504|consen 110 ----CRTVMIAGGLVAALGLLL-----SSFA--TSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYFEKKRALATGIAVSG 178 (509)
T ss_pred ----chHHHHHHHHHHHHHHHH-----HHHH--hhHHHHHHHHHHHhhccchhhhcchhhhhhhHhHHHHHHHHhhhhcc
Confidence 999999999999999998 4444 3567666 799999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHhhcCC--CchhHHHHHHHHHHHHhhhhheeeeeccCCC-CcccccchhHHHHHHHHHHHHHHHHHHh
Q 008482 169 VGLSGAILIQVYQTFFNN--KPTSYLLLLALLASIDPLLLMWFVRICNTNE-GNEKKHLNSFSLIALIVAAYLMVIIILE 245 (564)
Q Consensus 169 ~GLsa~i~s~i~~~~f~~--~~~~~llfla~~p~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~i~~~~y~~~~~~~~ 245 (564)
-|++..+++.+...++++ .....+.+.++. +.+++.....|+...+. +++.+...
T Consensus 179 sG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~--l~~~~~~~~~rp~~~~~~~~~~~~~~-------------------- 236 (509)
T KOG2504|consen 179 TGVGTVVFPPLLKYLLSKYGWRGALLIFGGIS--LNVLVAGALLRPLSPPKKPNEEKDLR-------------------- 236 (509)
T ss_pred CCcceeeHHHHHHHHHHHhCcHHHHHHHHHHH--HHHHHHHHHcCCCCcCCCchhhhhhc--------------------
Confidence 999999998666655533 112222222211 22222222233221110 00000000
Q ss_pred hhccCchHHHHHHHHHHHHHHhhhhhhhhhccCCCCCCCCcCccccCCCCCCCccchhhhccccCCCCCCCCCCCCCCCC
Q 008482 246 HIFALPFLVRVLTLILLLLLLASPLYVAIRVQGSDSDRTSETSFCEEDELTDDPHEMHAEKMHVRQDPVGYHRLPSEPDV 325 (564)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~ll~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (564)
....+.+ ..+...+.+.+..+.+. ...++.+.....+.
T Consensus 237 ------------------------------~~~~~~~-~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~--- 274 (509)
T KOG2504|consen 237 ------------------------------NSAASVE-STPKPVELRISERDSGL--------KKLSLSNLATLKRG--- 274 (509)
T ss_pred ------------------------------ccccccc-ccccccccccccCCCCC--------CcccccchhhhhhC---
Confidence 0000000 00000000000000000 00000000000000
Q ss_pred CCCCCCCCc-cCCCCCCc--HHHHhhcHHHHHHHHHHHhhhhchhheecchhHHHhhcCCCccchhHHHHHHHHHHHHhh
Q 008482 326 GTDTNDATT-SLWGGDLD--LLQAICTLEFWILSFAMACGMGSGLATVNNISQIGGSLGYSSFETSSLISLWSIWNFLGR 402 (564)
Q Consensus 326 ~~~~~~~~~-~~~~~~~t--~~~~l~t~~Fwll~~~~~~~~g~gl~~i~n~~~i~~~~g~~~~~aa~~Vsl~si~n~~GR 402 (564)
+++.. ...+...+ -.++++++.||++.+...+....-....-.++..+++.|++..+++..+|++++.|.+||
T Consensus 275 ----~~~~~~~~~~~~~~~~d~~ll~~~~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gR 350 (509)
T KOG2504|consen 275 ----PDKWRNSPLQAFLSMLDLSLLKDPKFLLLALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGR 350 (509)
T ss_pred ----CccccccchhhhhhhhhHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhh
Confidence 00000 00001111 268999999999999999987777777778899999999999999999999999999999
Q ss_pred hhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHh-cCcchHHHHHHHHHhhhccccchhHHHHHHhhccCchhhhh
Q 008482 403 FGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIAS-GLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIF 481 (564)
Q Consensus 403 l~~G~lsD~l~~~~~~~R~~~l~~~~~l~~i~~ll~~~-~~~~~l~~~~~l~G~~~G~~~~~~P~ivse~FG~k~fg~ny 481 (564)
++.|++.|+-.. ++.+...+..+...++.+.... .....++..++++|++.|...++.|.++.|+.|.+++..-|
T Consensus 351 i~~G~laD~~~~----~~~~~~~~~ll~~gl~~~~~p~~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~ 426 (509)
T KOG2504|consen 351 IILGLLADKPGI----RALVLFLLTLLIAGLARLFLPFATTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAY 426 (509)
T ss_pred hhhhhhcCcccc----chHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHH
Confidence 999999999852 3445555555556665544332 33346888899999999999999999999999999999999
Q ss_pred hhHhhhhhhHHHhhhhhhhhhhhhcccCCCCccccCCcccHHHHHHHHHHHHHHHHHHHHHH
Q 008482 482 NTITIANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSFFIMGSATLCGSLAAFGLF 543 (564)
Q Consensus 482 g~~~~a~~iG~~lf~~~l~g~iyD~~~~~~~~~C~G~~Cy~~af~i~~~l~v~a~vl~~~l~ 543 (564)
|++.+..+++.+ .+++++|++||.+++ |..+|+.+.+...++.+..++..
T Consensus 427 Gl~l~~~gi~~l-~gpPiag~~~d~tg~-----------Y~~~f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 427 GLLLLFQGIGAL-VGPPIAGLLYDITGN-----------YDHAFYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred HHHHHHhHHHHH-cCcccceeeeeccCC-----------eeeehhhcChHHHHHHHHHHHhH
Confidence 999999999996 688899999999998 89999998888877775555444
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.95 E-value=2e-26 Score=239.59 Aligned_cols=371 Identities=22% Similarity=0.261 Sum_probs=265.3
Q ss_pred hhHHHHHHHHHHHHhcCcccccccccHHHHhhcCCCcchhhHHHHhhhhhccc-cccchhhhccccCCCCCCCccchhhh
Q 008482 11 TRWVSTVASIWIQCTSGSLYTFSIYSPALKTTQHYDQTTLDTVSVFKDIGANT-GTLSGVLYTYSTSDHSSHHPRQQRLT 89 (564)
Q Consensus 11 ~Rw~~l~a~~~i~l~~G~~Y~fS~ys~~L~~~lg~sq~~~~~i~~a~~vg~~~-g~~~G~l~d~~~~~~~~~~~~~~~~~ 89 (564)
+||..+++.+..+++.|..|+|+.+.|++++++|+|.+|+..+..+..++..+ .++.|.+.||+|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G-------------- 66 (377)
T TIGR00890 1 RWWYVLVGTVIMCFTSGYVYTWTLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFG-------------- 66 (377)
T ss_pred CeEEEeHHHHHHHHHhhHHhhhhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcC--------------
Confidence 47889999999999999999999999999999999999999888888888865 578888888865
Q ss_pred cccCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHhhhcCCCCcceeeeehhhh
Q 008482 90 RLLGPWVVLLVGAIQCFAGYFLMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFPTYSGTAVGIMKGFV 169 (564)
Q Consensus 90 ~~~GP~~~~~iG~vl~~~Gy~~~~l~~~g~i~~~~~~~l~~~~~l~G~g~~~~~ta~l~t~~k~FP~~RG~a~Gl~~a~~ 169 (564)
+|.++.++.++..+|+.++... ++++.++...++.|.|.+..+.++.....+|||++||++.|+...+.
T Consensus 67 ----~r~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (377)
T TIGR00890 67 ----PRAVAMLGGILYGLGFTFYAIA-------DSLAALYLTYGLASAGVGIAYGIALNTAVKWFPDKRGLASGIIIGGY 135 (377)
T ss_pred ----ccchhHHhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcCcccHHHHHHHHHhc
Confidence 9999999999999999875432 24566666666889999999989999999999999999999999999
Q ss_pred hhhHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhhhhheeeeeccCCCCcccccchhHHHHHHHHHHHHHHHHHHhhhcc
Q 008482 170 GLSGAILIQVYQTFFNNKPTSYLLLLALLASIDPLLLMWFVRICNTNEGNEKKHLNSFSLIALIVAAYLMVIIILEHIFA 249 (564)
Q Consensus 170 GLsa~i~s~i~~~~f~~~~~~~llfla~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~y~~~~~~~~~~~~ 249 (564)
++++.+.. |....+ .+..+.+ ..+.. .++..++
T Consensus 136 ~~g~~~~~---------------------~~~~~~-----~~~~~~~--------~~f~~----~~~~~~~--------- 168 (377)
T TIGR00890 136 GLGSFILS---------------------PLITSV-----INLEGVP--------AAFIY----MGIIFLL--------- 168 (377)
T ss_pred chhHhHHH---------------------HHHHHH-----HhcccHH--------HHHHH----HHHHHHH---------
Confidence 99886653 222111 1100000 00110 0000000
Q ss_pred CchHHHHHHHHHHHHHHhhhhhhhhhccCCCCCCCCcCccccCCCCCCCccchhhhccccCCCCCCCCCCCCCCCCCCCC
Q 008482 250 LPFLVRVLTLILLLLLLASPLYVAIRVQGSDSDRTSETSFCEEDELTDDPHEMHAEKMHVRQDPVGYHRLPSEPDVGTDT 329 (564)
Q Consensus 250 ~~~~~~~~~~~~~~~ll~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (564)
...+.....+.++++ + . + + ++ +.
T Consensus 169 ----------------~~~~~~~~~~~~~~~-~-~-------------~-~-------------~~------~~------ 191 (377)
T TIGR00890 169 ----------------VIVLGAFLIGYPPGQ-L-I-------------K-T-------------NI------EV------ 191 (377)
T ss_pred ----------------HHHHHHHheecCchh-c-c-------------c-c-------------Cc------cc------
Confidence 000000000110000 0 0 0 0 00 00
Q ss_pred CCCCccCCCCCCcHHHHhhcHHHHHHHHHHHhhhhchhheecchhHHHhhcCCCccchhHHHHHHHHHHHHhhhhhhhhh
Q 008482 330 NDATTSLWGGDLDLLQAICTLEFWILSFAMACGMGSGLATVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVS 409 (564)
Q Consensus 330 ~~~~~~~~~~~~t~~~~l~t~~Fwll~~~~~~~~g~gl~~i~n~~~i~~~~g~~~~~aa~~Vsl~si~n~~GRl~~G~ls 409 (564)
...+.+.++.++++++|++...+++.......+.+...++.++.|.++..+....++.++.+.+|++.+|+++
T Consensus 192 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 264 (377)
T TIGR00890 192 -------SVKDYTVWEMLRTPQFWVLYLSFFLNAVSGLLLIGLYKPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALS 264 (377)
T ss_pred -------chhhhhHHHHHcCccHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0012356788999999999988888766666666667778788888877778889999999999999999999
Q ss_pred hhhhhcccCchhHHHHHHHHHHHHHHHHHHhcC--cc-hHHHHHHHHHhhhccccchhHHHHHHhhccCchhhhhhhHhh
Q 008482 410 DYFLHVKEWARPLFMVITLAAMSIGHLIIASGL--PG-ALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITI 486 (564)
Q Consensus 410 D~l~~~~~~~R~~~l~~~~~l~~i~~ll~~~~~--~~-~l~~~~~l~G~~~G~~~~~~P~ivse~FG~k~fg~nyg~~~~ 486 (564)
||+++|+ .+.+...+..++.+++.... .. .++...++.|+++|..+++.|.+++|.++.++.|+.+|+...
T Consensus 265 dr~g~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 338 (377)
T TIGR00890 265 DKIGRQK------TMSIVFGISAVGMAAMLFIPMLNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYT 338 (377)
T ss_pred HHHhhhh------hhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHH
Confidence 9996432 34444455555554433221 11 233456788999999999999999999999999999999988
Q ss_pred hhhhHHHhhhhhhhhhhhhcccCCCCccccCCcccHHHHHHHHHHHHHHH
Q 008482 487 ANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSFFIMGSATLCGS 536 (564)
Q Consensus 487 a~~iG~~lf~~~l~g~iyD~~~~~~~~~C~G~~Cy~~af~i~~~l~v~a~ 536 (564)
...+|.. +++.+.|.++|..+ |+..|.+.++++++++
T Consensus 339 ~~~~g~~-~~~~~~g~l~~~~g------------~~~~f~~~~~~~~~~~ 375 (377)
T TIGR00890 339 AKAVAGI-FGGLIASHALTEIG------------FEYTFIVTGAFALTSL 375 (377)
T ss_pred HHHHHHH-HHHHHHHHHHhhhc------------hhhHHHHHHHHHHHhc
Confidence 8888875 67778999999765 7889988887776654
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-22 Score=221.89 Aligned_cols=397 Identities=15% Similarity=0.143 Sum_probs=251.1
Q ss_pred chhHHHHHHHHHHHH-hcCcccccccccHHHHhhcCCCcchhhHHHHhhhhhccc-cccchhhhccccCCCCCCCccchh
Q 008482 10 NTRWVSTVASIWIQC-TSGSLYTFSIYSPALKTTQHYDQTTLDTVSVFKDIGANT-GTLSGVLYTYSTSDHSSHHPRQQR 87 (564)
Q Consensus 10 ~~Rw~~l~a~~~i~l-~~G~~Y~fS~ys~~L~~~lg~sq~~~~~i~~a~~vg~~~-g~~~G~l~d~~~~~~~~~~~~~~~ 87 (564)
..||.+++++.+.+. .-+..+.++.+-+++++.+|+|+++...+.+...++..+ +++.|.+.||+|
T Consensus 15 ~~~w~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g------------ 82 (455)
T TIGR00892 15 GWGWVVLGATFVSIGFSYAFPKAVTVFFKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRFG------------ 82 (455)
T ss_pred CcchHHHHHHHHHHHHHHhhhcchhhhHHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcC------------
Confidence 347988887777764 345567889999999999999999999776665555544 566787777764
Q ss_pred hhcccCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHH-HHHHHHhhhhhhhhHHHHHHHhhhcCCCCcceeeeeh
Q 008482 88 LTRLLGPWVVLLVGAIQCFAGYFLMWASVVGLIPRPPVPVMC-LFMLFAAHGMTFFNTADVVTSVRNFPTYSGTAVGIMK 166 (564)
Q Consensus 88 ~~~~~GP~~~~~iG~vl~~~Gy~~~~l~~~g~i~~~~~~~l~-~~~~l~G~g~~~~~ta~l~t~~k~FP~~RG~a~Gl~~ 166 (564)
+|.+++++.++..++.++...+ + +++.++ ...++.|.+.+.....+.....+|||++||++.|+..
T Consensus 83 ------~r~~l~~~~~~~~~~~~~~~~~-----~--~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~r~~a~g~~~ 149 (455)
T TIGR00892 83 ------CRPVVIAGGLLASLGMILASFS-----S--NVIELYLTAGFITGLGLAFNFQPSLTMLGKYFYRRRPLANGLAM 149 (455)
T ss_pred ------chHHHHhhHHHHHHHHHHHHHh-----h--hHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHhhHHHHHHHHH
Confidence 8999999998988888774222 1 345444 3446778888876667777778999999999999999
Q ss_pred hhhhhhHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhhhhheeeeeccCCCCcccccchhHHHHHHHHHHHHHHHHHHhh
Q 008482 167 GFVGLSGAILIQVYQTFFNNKPTSYLLLLALLASIDPLLLMWFVRICNTNEGNEKKHLNSFSLIALIVAAYLMVIIILEH 246 (564)
Q Consensus 167 a~~GLsa~i~s~i~~~~f~~~~~~~llfla~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~y~~~~~~~~~ 246 (564)
++.++++.+.. .+...+ +...+.+ ..|... .++.++.
T Consensus 150 ~~~~~g~~~~~----------------------~l~~~l----~~~~gwr--------~~f~~~---~~~~~~~------ 186 (455)
T TIGR00892 150 AGSPVFLSTLA----------------------PLNQYL----FESFGWR--------GSFLIL---GGLLLHC------ 186 (455)
T ss_pred hcccHHHHHHH----------------------HHHHHH----HHHhChH--------HHHHHH---HHHHHHH------
Confidence 99999886653 221110 1111111 011110 0000000
Q ss_pred hccCchHHHHHHHHHHHHHHhhhhhhhhhccCCCCCCCCcCccccCCCCCCCccchhhhccccCCCCCCCCCCCCCCCCC
Q 008482 247 IFALPFLVRVLTLILLLLLLASPLYVAIRVQGSDSDRTSETSFCEEDELTDDPHEMHAEKMHVRQDPVGYHRLPSEPDVG 326 (564)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~ll~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (564)
++ ..-. .+...++.+... +++++ . .+++... ++. +
T Consensus 187 ----------------~v--~~~~---~~~~~~~~~~~~---~~~~~----~------------~~~~~~~----~~~-~ 221 (455)
T TIGR00892 187 ----------------CV--CGAL---MRPVGPSQRVSK---SKSKE----G------------LPPDGST----KKL-S 221 (455)
T ss_pred ----------------HH--HHHH---hCCCCccccccc---ccccc----c------------CCCCCcc----ccc-c
Confidence 00 0000 000000000000 00000 0 0000000 000 0
Q ss_pred CCCCCCCccCCCCCCcHHHHhhcHHHHHHHHHHHhhhhchhheecchhHHHhhcCCCccchhHHHHHHHHHHHHhhhhhh
Q 008482 327 TDTNDATTSLWGGDLDLLQAICTLEFWILSFAMACGMGSGLATVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAG 406 (564)
Q Consensus 327 ~~~~~~~~~~~~~~~t~~~~l~t~~Fwll~~~~~~~~g~gl~~i~n~~~i~~~~g~~~~~aa~~Vsl~si~n~~GRl~~G 406 (564)
. ....+...+.-..+.+++++||.+.+..++......+....+.++.++.|+++.+++...++.++.+.++|++.|
T Consensus 222 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g 297 (455)
T TIGR00892 222 K----KSTAEKINRFLDFSLFTHRGFLVYLSGNVIMFLGFFAPIIFLVPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCG 297 (455)
T ss_pred c----cchhhhhhhhcchHHhcCchHHHHHHHHHHHHHHccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 000000011111368899999998887776655555556677888888999988899999999999999999999
Q ss_pred hhhhhhhhcccCchhHHHHHHHHHHHHHHHHHH-hcCcchHHHHHHHHHhhhccccchhHHHHHHhhccCchhhhhhhHh
Q 008482 407 YVSDYFLHVKEWARPLFMVITLAAMSIGHLIIA-SGLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTIT 485 (564)
Q Consensus 407 ~lsD~l~~~~~~~R~~~l~~~~~l~~i~~ll~~-~~~~~~l~~~~~l~G~~~G~~~~~~P~ivse~FG~k~fg~nyg~~~ 485 (564)
+++||...+. .|...+.....+.+++.++.. ......+++..++.|+++|......++++.|.++.++.|+.+|+..
T Consensus 298 ~l~d~~~~~~--~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~ 375 (455)
T TIGR00892 298 LIAGLKWIRP--HVQYLFSFALLFNGLTHLLCALAGDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVT 375 (455)
T ss_pred HHhcccccCH--HHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHH
Confidence 9999742111 122222223333333333332 2233346667889999999999999999999999999999999999
Q ss_pred hhhhhHHHhhhhhhhhhhhhcccCCCCccccCCcccHHHHHHHHHHHHHHHH
Q 008482 486 IANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSFFIMGSATLCGSL 537 (564)
Q Consensus 486 ~a~~iG~~lf~~~l~g~iyD~~~~~~~~~C~G~~Cy~~af~i~~~l~v~a~v 537 (564)
....+|.. +++.++|.++|..++ |+..|.+.+++++++.+
T Consensus 376 ~~~~lg~~-igp~i~G~l~~~~g~-----------~~~~f~~~~~~~li~~~ 415 (455)
T TIGR00892 376 IVECCAVL-IGPPLAGRLVDATKN-----------YKYIFYASGSIVVSAGL 415 (455)
T ss_pred HHHHHHHH-ccccceeeeehhcCC-----------cchHHHHhhHHHHHHHH
Confidence 88888885 688899999998776 78898888777766654
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-21 Score=214.07 Aligned_cols=401 Identities=15% Similarity=0.027 Sum_probs=238.4
Q ss_pred cccccccccHHHHhhcCCCcchhhHHHHhhhhhccc-cccchhhhccccCCCCCCCccchhhhcccCcHHHHHHHHHHHH
Q 008482 28 SLYTFSIYSPALKTTQHYDQTTLDTVSVFKDIGANT-GTLSGVLYTYSTSDHSSHHPRQQRLTRLLGPWVVLLVGAIQCF 106 (564)
Q Consensus 28 ~~Y~fS~ys~~L~~~lg~sq~~~~~i~~a~~vg~~~-g~~~G~l~d~~~~~~~~~~~~~~~~~~~~GP~~~~~iG~vl~~ 106 (564)
.-..+++-.|++++++|+|.+|+..+.++..++..+ .++.|.+.||+| +|.++.++.++.+
T Consensus 44 ~r~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g------------------~r~~l~~~~~~~~ 105 (467)
T PRK09556 44 IRKNFKAAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKN------------------TKQFLPFLLILSA 105 (467)
T ss_pred HhcChhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccC------------------ccchHHHHHHHHH
Confidence 346678889999999999999999888887777765 578888888765 9999988888888
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHhhhcC-CCCcceeeeehhhhhhhHHHHHHHHHhhcC
Q 008482 107 AGYFLMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFP-TYSGTAVGIMKGFVGLSGAILIQVYQTFFN 185 (564)
Q Consensus 107 ~Gy~~~~l~~~g~i~~~~~~~l~~~~~l~G~g~~~~~ta~l~t~~k~FP-~~RG~a~Gl~~a~~GLsa~i~s~i~~~~f~ 185 (564)
++.+++.....+.. .+++.++.+-++.|.+.+....+......+||| ++||++.|+...+.++++++-..+..
T Consensus 106 ~~~~~~~~~~~~~~--~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~---- 179 (467)
T PRK09556 106 ICMLGFGASLGSGS--VSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVAL---- 179 (467)
T ss_pred HHHHHHHHHHhccc--chHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHH----
Confidence 88777655433433 467888888888999999888888899999998 57999999999999998876432110
Q ss_pred CCchhHHHHHHHHHHHHhhhhheeeeeccCCCCcccccchhHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHH
Q 008482 186 NKPTSYLLLLALLASIDPLLLMWFVRICNTNEGNEKKHLNSFSLIALIVAAYLMVIIILEHIFALPFLVRVLTLILLLLL 265 (564)
Q Consensus 186 ~~~~~~llfla~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~l 265 (564)
.+ .+.. .. ++.... |.. .++..++
T Consensus 180 -----------------~~-----~~~~-~~-~~~~~~---f~~----~g~~~~~------------------------- 203 (467)
T PRK09556 180 -----------------WG-----ANYF-FD-GHVIGM---FIF----PSIIALI------------------------- 203 (467)
T ss_pred -----------------HH-----HHhh-cc-CcchhH---HHH----HHHHHHH-------------------------
Confidence 00 0000 00 000000 100 0000000
Q ss_pred HhhhhhhhhhccCCCCCCCCcCccccCCCCCCCccchhhhccccCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCcHHH
Q 008482 266 LASPLYVAIRVQGSDSDRTSETSFCEEDELTDDPHEMHAEKMHVRQDPVGYHRLPSEPDVGTDTNDATTSLWGGDLDLLQ 345 (564)
Q Consensus 266 l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~ 345 (564)
+..+.....+.++++ .+.. + +++ ..+++ . .++++ +.+ .++....+.-.++
T Consensus 204 ~~i~~~~~~~~~p~~-~~~~---~-~~~-~~~~~-----------~-~~~~~----~~~--------~~~~~~~~~~~~~ 253 (467)
T PRK09556 204 IGFIGLRYGSDSPEE-LGWG---K-AEE-IFGEP-----------I-SEEDK----ETE--------STDMTKWQIFVEY 253 (467)
T ss_pred HHHHHHHhCCCChhh-cCCC---C-hhh-cccCc-----------c-chhhh----ccc--------cccCcHHHHHHHH
Confidence 000000000111110 0000 0 000 00000 0 00000 000 0000000111234
Q ss_pred HhhcHHHHHHHHHHHhhhhchhheecchhHHHhh-cCCCccchhHHHHHHHHHHHHhhhhhhhhhhhhhhcccCchhHHH
Q 008482 346 AICTLEFWILSFAMACGMGSGLATVNNISQIGGS-LGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFM 424 (564)
Q Consensus 346 ~l~t~~Fwll~~~~~~~~g~gl~~i~n~~~i~~~-~g~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~R~~~l 424 (564)
.++++.+|.+++..++.......+.+.++.+.++ .|++..+++...++..+++.+|++++|+++||+++|+ ....
T Consensus 254 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~----~~~~ 329 (467)
T PRK09556 254 VLKNPVIWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRR----ALVA 329 (467)
T ss_pred HHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCc----hHHH
Confidence 7999999999998888766655555567767754 7999888888999999999999999999999997542 1211
Q ss_pred HHHHHHHHHHHHHHHhcCc-chHHHHHHHHHhhhccccchhHHHHHHhhccCchhhhhhhHhhhhhh-HHHhhhhhhhhh
Q 008482 425 VITLAAMSIGHLIIASGLP-GALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPV-GSYIFSVRVVGY 502 (564)
Q Consensus 425 ~~~~~l~~i~~ll~~~~~~-~~l~~~~~l~G~~~G~~~~~~P~ivse~FG~k~fg~nyg~~~~a~~i-G~~lf~~~l~g~ 502 (564)
...........+++..... ..+++...++|++..+........+.|.+..++.|+-.|+......+ |.. +++.+.|.
T Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~-~~~~~~G~ 408 (467)
T PRK09556 330 CIALALIIFTLGVYQHATSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDS-FAKVGLGM 408 (467)
T ss_pred HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHH-HHhhhHHH
Confidence 1111111111112222222 12344555667543333334446777999999999999999765554 543 57778999
Q ss_pred hhhcccCCCCccccCCcccHHHHHHHHHHHHHHHHHHHHHH
Q 008482 503 IYDREASGEGNKCTGTHCFMLSFFIMGSATLCGSLAAFGLF 543 (564)
Q Consensus 503 iyD~~~~~~~~~C~G~~Cy~~af~i~~~l~v~a~vl~~~l~ 543 (564)
+.|.+.+.....=+...-|+..|.+..+++++++++.+.+.
T Consensus 409 i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 449 (467)
T PRK09556 409 IADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMAIVA 449 (467)
T ss_pred HhcccccccccccccccChHHHHHHHHHHHHHHHHHHHHHH
Confidence 99932100000000011289999999888888876766554
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.9e-21 Score=211.56 Aligned_cols=409 Identities=15% Similarity=0.115 Sum_probs=241.6
Q ss_pred chhHHHHHHHHHHHHhcCcc-cccccccHHHHhhcCCCcchhhHHHHhhhhhccc-cccchhhhccccCCCCCCCccchh
Q 008482 10 NTRWVSTVASIWIQCTSGSL-YTFSIYSPALKTTQHYDQTTLDTVSVFKDIGANT-GTLSGVLYTYSTSDHSSHHPRQQR 87 (564)
Q Consensus 10 ~~Rw~~l~a~~~i~l~~G~~-Y~fS~ys~~L~~~lg~sq~~~~~i~~a~~vg~~~-g~~~G~l~d~~~~~~~~~~~~~~~ 87 (564)
+.+|..+.+..+........ +.++...|.++++ |+|.+|...+.+...++..+ .++.|.+.||+|
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g------------ 91 (452)
T PRK11273 25 RLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSN------------ 91 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccC------------
Confidence 45676655554444333222 3477888999988 99999999887777777765 678898888875
Q ss_pred hhcccCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHhhhcC-CCCcceeeeeh
Q 008482 88 LTRLLGPWVVLLVGAIQCFAGYFLMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFP-TYSGTAVGIMK 166 (564)
Q Consensus 88 ~~~~~GP~~~~~iG~vl~~~Gy~~~~l~~~g~i~~~~~~~l~~~~~l~G~g~~~~~ta~l~t~~k~FP-~~RG~a~Gl~~ 166 (564)
+|.++.++.++..++.+.+.+.... ..+++.+....++.|.+.+..+........++|| ++||++.|+..
T Consensus 92 ------~k~~l~~~~~~~~i~~~~~~~~~~~---~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~ 162 (452)
T PRK11273 92 ------PRVFLPAGLILAAAVMLFMGFVPWA---TSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWN 162 (452)
T ss_pred ------CchhHHHHHHHHHHHHHHHHhhhcc---cccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHH
Confidence 8999999999999888876543211 1245556666677888888888777777889997 56999999987
Q ss_pred hhhhhhHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhhhhheeeeeccCCCCcccccchhHHHHHHHHHHHHHHHHHHhh
Q 008482 167 GFVGLSGAILIQVYQTFFNNKPTSYLLLLALLASIDPLLLMWFVRICNTNEGNEKKHLNSFSLIALIVAAYLMVIIILEH 246 (564)
Q Consensus 167 a~~GLsa~i~s~i~~~~f~~~~~~~llfla~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~y~~~~~~~~~ 246 (564)
.+.++++.+.. |........ .. + ... .+.. ......+.
T Consensus 163 ~~~~~g~~~~~---------------------~l~~~~~~~--~~--g-----w~~---~f~i---~~~~~~~~------ 200 (452)
T PRK11273 163 CAHNVGGGLPP---------------------LLFLLGMAW--FN--D-----WHA---ALYM---PAFAAILV------ 200 (452)
T ss_pred HHHHhhhhHHH---------------------HHHHHHHHH--hc--c-----HHH---HHHH---HHHHHHHH------
Confidence 77777765443 211100000 00 0 000 0110 00000000
Q ss_pred hccCchHHHHHHHHHHHHHHhhhhhhhhhccCCCCCCCCcCccccCCCCCCCccchhhhccccCCCCCCCCCCCCCCCCC
Q 008482 247 IFALPFLVRVLTLILLLLLLASPLYVAIRVQGSDSDRTSETSFCEEDELTDDPHEMHAEKMHVRQDPVGYHRLPSEPDVG 326 (564)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~ll~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (564)
.++... ..+.++++.... ++++ . + ++.++++. ++.
T Consensus 201 -----------------~~l~~~---~~~~~~~~~~~~-----~~~~--------~---~---~~~~~~~~---~~~--- 235 (452)
T PRK11273 201 -----------------ALFAFA---MMRDTPQSCGLP-----PIEE--------Y---K---NDYPDDYN---EKH--- 235 (452)
T ss_pred -----------------HHHHHH---HccCCHhhcCCC-----Chhh--------h---h---hccccccc---ccc---
Confidence 000000 001111100000 0000 0 0 00000000 000
Q ss_pred CCCCCCCccCCCCCCcHHHHhhcHHHHHHHHHHHhhhhchhheecchhHHHhh-cCCCccchhHHHHHHHHHHHHhhhhh
Q 008482 327 TDTNDATTSLWGGDLDLLQAICTLEFWILSFAMACGMGSGLATVNNISQIGGS-LGYSSFETSSLISLWSIWNFLGRFGA 405 (564)
Q Consensus 327 ~~~~~~~~~~~~~~~t~~~~l~t~~Fwll~~~~~~~~g~gl~~i~n~~~i~~~-~g~~~~~aa~~Vsl~si~n~~GRl~~ 405 (564)
+ + .....+.-.+.++|++.+|.+++.+++....-..+.+..+.+.++ .|++..+++...++.++++.+|+++.
T Consensus 236 ---~-~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~ 309 (452)
T PRK11273 236 ---E-Q--ELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLC 309 (452)
T ss_pred ---C-C--CccHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0 000001112347889999999888887766555666678888876 58887777788889999999999999
Q ss_pred hhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHh--c-CcchHHHHHHHHHhhhccccchhHHHHHHhhccCchhhhhh
Q 008482 406 GYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIAS--G-LPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFN 482 (564)
Q Consensus 406 G~lsD~l~~~~~~~R~~~l~~~~~l~~i~~ll~~~--~-~~~~l~~~~~l~G~~~G~~~~~~P~ivse~FG~k~fg~nyg 482 (564)
|+++||+.+++ |.........+..++.+++.. . .+...++...++|....+........+.|.+..+..|+..|
T Consensus 310 G~l~dr~~~~r---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g 386 (452)
T PRK11273 310 GWMSDKVFRGN---RGATGVFFMTLVTIATIVYWLNPAGNPTVDMACMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAG 386 (452)
T ss_pred HHHHHHHccCC---cchHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHH
Confidence 99999996432 111222222222333222211 1 11123334445555443333344556789999999999999
Q ss_pred hHhhhhhhHHHhhhhhhhhhhhhcccCCCCccccCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 008482 483 TITIANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSFFIMGSATLCGSLAAFGLFLRTKR 548 (564)
Q Consensus 483 ~~~~a~~iG~~lf~~~l~g~iyD~~~~~~~~~C~G~~Cy~~af~i~~~l~v~a~vl~~~l~~r~~~ 548 (564)
+......+|..+.++.+.|.++|..+ |+.+|.++.+++++++++..++.+-.||
T Consensus 387 ~~~~~~~~g~~~~g~~v~g~l~~~~g------------~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 440 (452)
T PRK11273 387 FTGLFGYLGGSVAASAIVGYTVDFFG------------WDGGFMVMIGGSILAVILLIVVMIGEKR 440 (452)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHhc------------chHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 98765556654556778999999865 7999999999999998777765543333
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=6e-21 Score=203.88 Aligned_cols=371 Identities=9% Similarity=0.060 Sum_probs=243.6
Q ss_pred chhHHHHHHHHHHHHhcCcc-cccccccHHHHhhcCCCcchhhHHHHhhhhhccc-cccchhhhccccCCCCCCCccchh
Q 008482 10 NTRWVSTVASIWIQCTSGSL-YTFSIYSPALKTTQHYDQTTLDTVSVFKDIGANT-GTLSGVLYTYSTSDHSSHHPRQQR 87 (564)
Q Consensus 10 ~~Rw~~l~a~~~i~l~~G~~-Y~fS~ys~~L~~~lg~sq~~~~~i~~a~~vg~~~-g~~~G~l~d~~~~~~~~~~~~~~~ 87 (564)
...|..+. ...+.+..... +..+...|++++++|+|.+|...+.+...++..+ .++.|.+.||+
T Consensus 6 ~~~~~~~~-~~~~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~------------- 71 (393)
T PRK09705 6 PLNFMLLV-LVLIGLNMRPLLTSVGPLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHV------------- 71 (393)
T ss_pred chHHHHHH-HHHHHHHcchhhhccchhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHh-------------
Confidence 34565544 34444443333 6689999999999999999999887777777654 56778777776
Q ss_pred hhcccCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHhhhcCCCCcceeeeehh
Q 008482 88 LTRLLGPWVVLLVGAIQCFAGYFLMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFPTYSGTAVGIMKG 167 (564)
Q Consensus 88 ~~~~~GP~~~~~iG~vl~~~Gy~~~~l~~~g~i~~~~~~~l~~~~~l~G~g~~~~~ta~l~t~~k~FP~~RG~a~Gl~~a 167 (564)
|+|.++.+|.+++.+|..+ .+..+ +++.+.+.-++.|.|.+..+........|+||++||.+.|+..+
T Consensus 72 -----G~r~~l~~~~~l~~~~~~~-----~~~a~--~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 139 (393)
T PRK09705 72 -----SERRSVAISLLLIAVGALM-----RELYP--QSALLLSSALLGGVGIGIIQAVMPSVIKRRFQQRTPLVMGLWSA 139 (393)
T ss_pred -----CchHHHHHHHHHHHHHHHH-----HHHCc--chHHHHHHHHHHHhHHHHHhhhhhHHHHHHccccchhHHHHHHH
Confidence 5999999999999999998 44443 46667778999999999988888788888999999999999887
Q ss_pred hhhhhHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhhhhheeeeeccCCCCcccccchhHHHHHHHHHHHHHHHHHHhhh
Q 008482 168 FVGLSGAILIQVYQTFFNNKPTSYLLLLALLASIDPLLLMWFVRICNTNEGNEKKHLNSFSLIALIVAAYLMVIIILEHI 247 (564)
Q Consensus 168 ~~GLsa~i~s~i~~~~f~~~~~~~llfla~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~y~~~~~~~~~~ 247 (564)
+..+++.+...+. |.+. .. . .+.. ..+.. +.+..
T Consensus 140 ~~~~g~~~g~~~~------------------~~l~--------~~---~-~~w~---~~~~~-------~~~~~------ 173 (393)
T PRK09705 140 ALMGGGGLGAAIT------------------PWLV--------QH---S-ETWY---QTLAW-------WALPA------ 173 (393)
T ss_pred HHHHHHHHHHHHH------------------HHHH--------Hh---c-CCHH---HHHHH-------HHHHH------
Confidence 7766665543211 1110 00 0 0000 00000 00000
Q ss_pred ccCchHHHHHHHHHHHHHHhhhhhhhhhccCCCCCCCCcCccccCCCCCCCccchhhhccccCCCCCCCCCCCCCCCCCC
Q 008482 248 FALPFLVRVLTLILLLLLLASPLYVAIRVQGSDSDRTSETSFCEEDELTDDPHEMHAEKMHVRQDPVGYHRLPSEPDVGT 327 (564)
Q Consensus 248 ~~~~~~~~~~~~~~~~~ll~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (564)
++.++...+ ..++ + + +++ +++
T Consensus 174 -------------~~~~~~~~~------~~~~--~----------------~--------------~~~-----~~~--- 194 (393)
T PRK09705 174 -------------VVALFAWWW------QSAR--E----------------V--------------ASS-----HKT--- 194 (393)
T ss_pred -------------HHHHHHHHH------HhcC--C----------------C--------------ccc-----cCC---
Confidence 000000000 0000 0 0 000 000
Q ss_pred CCCCCCccCCCCCCcHHHHhhcHHHHHHHHHHHhhhhchhheecchhHHHhhcCCCccchhHHHHHHHHHHHHhhhhhhh
Q 008482 328 DTNDATTSLWGGDLDLLQAICTLEFWILSFAMACGMGSGLATVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGY 407 (564)
Q Consensus 328 ~~~~~~~~~~~~~~t~~~~l~t~~Fwll~~~~~~~~g~gl~~i~n~~~i~~~~g~~~~~aa~~Vsl~si~n~~GRl~~G~ 407 (564)
+.+.++.++++++|.+.+.+++.......+.+.++++.++.|.+..+++...++.++++.+||+++|+
T Consensus 195 ------------~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~lp~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~ 262 (393)
T PRK09705 195 ------------TTTPVRVVFTPRAWTLGVYFGLINGGYASLIAWLPAFYIEIGASAQYSGSLLALMTLGQAAGALLMPA 262 (393)
T ss_pred ------------CcCCcccccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHH
Confidence 00113456788999888877766555556667788888888999888899999999999999999999
Q ss_pred hhhhhhhcccCchhHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHhhhccccchhHHHHHHhhc-cCchhhhhhhHhh
Q 008482 408 VSDYFLHVKEWARPLFMVITLAAMSIGHLIIASGLPGALYAGSILVGVCYGSQWSLMPTIASEIFG-VLQMGTIFNTITI 486 (564)
Q Consensus 408 lsD~l~~~~~~~R~~~l~~~~~l~~i~~ll~~~~~~~~l~~~~~l~G~~~G~~~~~~P~ivse~FG-~k~fg~nyg~~~~ 486 (564)
++||+++| ..+.....+..++.+++....+....+...+.|++.|..+......+.+.++ .++-|+.+|++..
T Consensus 263 l~~r~~~~------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~ 336 (393)
T PRK09705 263 MARHQDRR------KLLMLALVLQLVGFCGFIWLPLQLPVLWAMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQG 336 (393)
T ss_pred HHhhccch------HHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHH
Confidence 99998643 2233334444444443321111112223456788888888777777788886 4567889998876
Q ss_pred hhhhHHHhhhhhhhhhhhhcccCCCCccccCCcccHHHHHHHHHHHHHHHHHHHH
Q 008482 487 ANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSFFIMGSATLCGSLAAFG 541 (564)
Q Consensus 487 a~~iG~~lf~~~l~g~iyD~~~~~~~~~C~G~~Cy~~af~i~~~l~v~a~vl~~~ 541 (564)
...++.. +++.+.|++.|..++ |...|.+.+++++++.+..++
T Consensus 337 ~~~~~~~-~gp~~~G~l~~~~g~-----------~~~~~~~~~~~~~~~~~~~~~ 379 (393)
T PRK09705 337 IGFIIAG-LAPWFSGVLRSISGN-----------YLMDWAFHALCVVGLMIITLR 379 (393)
T ss_pred HHHHHHH-HHHHHHHHHHHHhCC-----------chHHHHHHHHHHHHHHHHHHH
Confidence 5555553 466789999999887 899999999888887655544
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1e-21 Score=215.48 Aligned_cols=390 Identities=14% Similarity=0.130 Sum_probs=231.2
Q ss_pred hHHHHHHHHHHHHhcCcccccccccHHHHhhcCCCcchhhHHHHhhhhhcccc-ccchhhhccccCCCCCCCccchhhhc
Q 008482 12 RWVSTVASIWIQCTSGSLYTFSIYSPALKTTQHYDQTTLDTVSVFKDIGANTG-TLSGVLYTYSTSDHSSHHPRQQRLTR 90 (564)
Q Consensus 12 Rw~~l~a~~~i~l~~G~~Y~fS~ys~~L~~~lg~sq~~~~~i~~a~~vg~~~g-~~~G~l~d~~~~~~~~~~~~~~~~~~ 90 (564)
+|..........+..-..|.++.+.|.+++++|+|.+|...+.+...++..++ ++.|.+.||+|
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G--------------- 99 (476)
T PLN00028 35 MRAFHLSWISFFTCFVSTFAAAPLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYG--------------- 99 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---------------
Confidence 34444444444444445688999999999999999999998877777777664 78888888865
Q ss_pred ccCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHhhhcC-CCCcceeeeehhhh
Q 008482 91 LLGPWVVLLVGAIQCFAGYFLMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFP-TYSGTAVGIMKGFV 169 (564)
Q Consensus 91 ~~GP~~~~~iG~vl~~~Gy~~~~l~~~g~i~~~~~~~l~~~~~l~G~g~~~~~ta~l~t~~k~FP-~~RG~a~Gl~~a~~ 169 (564)
+|.++.++.++..++..+... .+ +++.+.+..++.|++.+.. ..+.....+||| ++||++.|+..+..
T Consensus 100 ---~r~~~~~~~~~~~~~~~~~~~-----~~--s~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~rg~a~g~~~~~~ 168 (476)
T PLN00028 100 ---PRYGSAFLLMLTAPAVFCMSL-----VS--SATGFIAVRFFIGFSLATF-VSCQYWMSTMFNGKIVGTANGIAAGWG 168 (476)
T ss_pred ---ChHHHHHHHHHHHHHHHHHHH-----hc--CHHHHHHHHHHHHHHHHhh-HHHHHHHHHhcChhheeHHHHHHHHHH
Confidence 999999999998888776432 22 3455555566677776643 334444678897 57999999987666
Q ss_pred hhhHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhhhhheeeeeccCCCCcccccchhHHHHHHHHHHHHHHHHHHhhhcc
Q 008482 170 GLSGAILIQVYQTFFNNKPTSYLLLLALLASIDPLLLMWFVRICNTNEGNEKKHLNSFSLIALIVAAYLMVIIILEHIFA 249 (564)
Q Consensus 170 GLsa~i~s~i~~~~f~~~~~~~llfla~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~y~~~~~~~~~~~~ 249 (564)
.+++.+...+. |.+...+. +........... .|.+ .++..++.
T Consensus 169 ~~g~~~~~~~~------------------~~i~~~~~----~~~~~~~~gWr~---~f~i----~g~l~l~~-------- 211 (476)
T PLN00028 169 NLGGGVTQLLM------------------PLVFPLIK----DAGAPSFTAWRI---AFFV----PGLLHIIM-------- 211 (476)
T ss_pred HHHHHHHHHHH------------------HHHHHHHH----hcCCcchhhhHH---HHHH----HHHHHHHH--------
Confidence 66665432211 22211100 000000000000 1111 11000000
Q ss_pred CchHHHHHHHHHHHHHHhhhhhhhhhccCCCCCCCCcCccccCCCCCCCccchhhhccccCCCCCCCCCCCCCCCCCCCC
Q 008482 250 LPFLVRVLTLILLLLLLASPLYVAIRVQGSDSDRTSETSFCEEDELTDDPHEMHAEKMHVRQDPVGYHRLPSEPDVGTDT 329 (564)
Q Consensus 250 ~~~~~~~~~~~~~~~ll~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (564)
.++....+ +..+++ + . ++. +++ .+.+
T Consensus 212 ------------~l~~~~~~-----~~~p~~-~------------~--~~~-------------~~~----~~~~----- 237 (476)
T PLN00028 212 ------------GILVLTLG-----QDLPDG-N------------Y--REL-------------KKS----GTMP----- 237 (476)
T ss_pred ------------HHHHHHHc-----CcCCCC-c------------h--hhH-------------Hhc----Cccc-----
Confidence 00000000 000000 0 0 000 000 0000
Q ss_pred CCCCccCCCCCCcHHHHhhcHHHHHHHHHHHhhhhchhheecchhHHHhh-cCCCccchhHHHHHHHHHHHHhhhhhhhh
Q 008482 330 NDATTSLWGGDLDLLQAICTLEFWILSFAMACGMGSGLATVNNISQIGGS-LGYSSFETSSLISLWSIWNFLGRFGAGYV 408 (564)
Q Consensus 330 ~~~~~~~~~~~~t~~~~l~t~~Fwll~~~~~~~~g~gl~~i~n~~~i~~~-~g~~~~~aa~~Vsl~si~n~~GRl~~G~l 408 (564)
+......+++.++++++|++++.+++..+....+.+.+.++.++ .|+++.+++...++..+++.+||+++|++
T Consensus 238 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~l 311 (476)
T PLN00028 238 ------KDSFSKVLRYGVTNYRTWILALTYGYSFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYL 311 (476)
T ss_pred ------cccHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 00001245788999999999998887766666666667777654 69998888999999999999999999999
Q ss_pred hhhhhhcccC-chhHHHHHHHHHHHHHHHHHHhcC-cchHHHHHHHH----HhhhccccchhHHHHHHhhccCchhhhhh
Q 008482 409 SDYFLHVKEW-ARPLFMVITLAAMSIGHLIIASGL-PGALYAGSILV----GVCYGSQWSLMPTIASEIFGVLQMGTIFN 482 (564)
Q Consensus 409 sD~l~~~~~~-~R~~~l~~~~~l~~i~~ll~~~~~-~~~l~~~~~l~----G~~~G~~~~~~P~ivse~FG~k~fg~nyg 482 (564)
+||+++|++. .|.+.+.+.+.+.++..+++.... .....+..++. +.+.|..+++.| + +++|+.|+++|
T Consensus 312 sDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~----~-~~~~~~g~~~g 386 (476)
T PLN00028 312 SDVAARRFGMRGRLWALWIVQTLGGVFCIWLGRANSLGAAIVVMILFSIFVQAACGATFGIVP----F-VSRRSLGVISG 386 (476)
T ss_pred HHHHHHhcCcchhHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhhhhhcccCc----c-cChhhchhhhh
Confidence 9999987653 244454444444444433332221 11122222333 345566665555 3 35689999999
Q ss_pred hHhhhhhhHHHhhhhhhhhhhhhcccCCCCccccCCcccHHHHHHHHHHHHHHHHHHHHHH
Q 008482 483 TITIANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSFFIMGSATLCGSLAAFGLF 543 (564)
Q Consensus 483 ~~~~a~~iG~~lf~~~l~g~iyD~~~~~~~~~C~G~~Cy~~af~i~~~l~v~a~vl~~~l~ 543 (564)
++..+..+|+.+ .+.++|.++. .-|+.+|++..++.+++.++.++.+
T Consensus 387 ~~~~~g~lg~~i-----~~~l~~~~~~---------~~y~~~f~~~~~~~~i~~~~~~~~~ 433 (476)
T PLN00028 387 LTGAGGNVGAVL-----TQLLFFTGSS---------YSTETGISLMGVMIIACTLPVAFIH 433 (476)
T ss_pred hhhccccHHHHH-----HHHHHHhcCC---------ccHhhHHHHHHHHHHHHHHHHHhee
Confidence 998877777763 4455654321 1289999999988888887776654
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.5e-20 Score=203.39 Aligned_cols=380 Identities=14% Similarity=0.077 Sum_probs=225.5
Q ss_pred cccccccccHHHHhhcCCCcchhhHHHHhhhhhccc-cccchhhhccccCCCCCCCccchhhhcccCcHHHHHHHHHHHH
Q 008482 28 SLYTFSIYSPALKTTQHYDQTTLDTVSVFKDIGANT-GTLSGVLYTYSTSDHSSHHPRQQRLTRLLGPWVVLLVGAIQCF 106 (564)
Q Consensus 28 ~~Y~fS~ys~~L~~~lg~sq~~~~~i~~a~~vg~~~-g~~~G~l~d~~~~~~~~~~~~~~~~~~~~GP~~~~~iG~vl~~ 106 (564)
..+.++.+.|++++++|+|.+|...+.+...++..+ .++.|.+.||+| +|.++.++.++.+
T Consensus 38 ~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g------------------~r~~~~~~~~~~~ 99 (434)
T PRK11663 38 TRKSFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSN------------------ARYFMGIGLIATG 99 (434)
T ss_pred hhhhHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcC------------------CchhHHHHHHHHH
Confidence 345778899999999999999999887777777754 678888888765 9999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHhhhcC-CCCcceeeeehhhhhhhHHHHHHHHHhhcC
Q 008482 107 AGYFLMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFP-TYSGTAVGIMKGFVGLSGAILIQVYQTFFN 185 (564)
Q Consensus 107 ~Gy~~~~l~~~g~i~~~~~~~l~~~~~l~G~g~~~~~ta~l~t~~k~FP-~~RG~a~Gl~~a~~GLsa~i~s~i~~~~f~ 185 (564)
++..++... .+++.++...++.|.+.+..+.+......+||| ++||++.|+...+.++++.+...+..
T Consensus 100 ~~~~~~~~~-------~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~---- 168 (434)
T PRK11663 100 IINILFGFS-------SSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVG---- 168 (434)
T ss_pred HHHHHHHHH-------hHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 998875332 246666666667788888888888888899998 57999999999999888876532221
Q ss_pred CCchhHHHHHHHHHHHHhhhhheeeeeccCCCCcccccchhHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHH
Q 008482 186 NKPTSYLLLLALLASIDPLLLMWFVRICNTNEGNEKKHLNSFSLIALIVAAYLMVIIILEHIFALPFLVRVLTLILLLLL 265 (564)
Q Consensus 186 ~~~~~~llfla~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~l 265 (564)
.+ .+..+.+ . .+.. .++..+.. .++
T Consensus 169 ------------------~l----~~~~gw~-----~---~f~~----~~i~~~~~---------------------~~~ 193 (434)
T PRK11663 169 ------------------AI----ALHYGWR-----Y---GMMI----AGIIAIVV---------------------GLF 193 (434)
T ss_pred ------------------HH----HHcccHH-----H---HHHH----HHHHHHHH---------------------HHH
Confidence 11 1111111 0 0111 00000000 000
Q ss_pred HhhhhhhhhhccCCCCCCCCcCccccCCCCCCCccchhhhccccCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCcHHH
Q 008482 266 LASPLYVAIRVQGSDSDRTSETSFCEEDELTDDPHEMHAEKMHVRQDPVGYHRLPSEPDVGTDTNDATTSLWGGDLDLLQ 345 (564)
Q Consensus 266 l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~ 345 (564)
. ....+.++++...++ .+ +.. + +.++. ..+.+ +. ...-.+.-...
T Consensus 194 ~----~~~~~~~p~~~~~~~-----~~-----~~~-~---------~~~~~---~~~~~-------~~-~~~~~~~~~~~ 238 (434)
T PRK11663 194 L----CWRLRDKPQAMGLPS-----VG-----EWR-H---------DALEL---AQQQE-------GA-GLSRKEILTKY 238 (434)
T ss_pred H----HHHcCCCHhhcCCCC-----cc-----ccc-c---------ccccc---chhcc-------cc-CCChhhhHHHH
Confidence 0 000011100000000 00 000 0 00000 00000 00 00000111123
Q ss_pred HhhcHHHHHHHHHHHhhhhchhheecchhHHHh-hcCCCccchhHHHHHHHHHHHHhhhhhhhhhhhhhhcccCchhHHH
Q 008482 346 AICTLEFWILSFAMACGMGSGLATVNNISQIGG-SLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFM 424 (564)
Q Consensus 346 ~l~t~~Fwll~~~~~~~~g~gl~~i~n~~~i~~-~~g~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~R~~~l 424 (564)
.++++.+|.+.+.+++....-..+.+.++++.+ +.|++..++....+++.+++.+||+++|+++||+.++.........
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~ 318 (434)
T PRK11663 239 VLLNPYIWLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIF 318 (434)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHH
Confidence 678899999988776654443344445666764 5699988888999999999999999999999999543210111111
Q ss_pred HHHHHHHHHHHHHHHhcCcchHHHHHHHHHhhhccccchhHHHHHHhhccCchhhhhhhHhhhhhhHHHhhhhhhhhhhh
Q 008482 425 VITLAAMSIGHLIIASGLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIY 504 (564)
Q Consensus 425 ~~~~~l~~i~~ll~~~~~~~~l~~~~~l~G~~~G~~~~~~P~ivse~FG~k~fg~nyg~~~~a~~iG~~lf~~~l~g~iy 504 (564)
.+...+..+..+++.......+++...++|+...+...+....++|.|+.++.|+..|+......+|.. +++.+.|.+.
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~-~~p~~~g~l~ 397 (434)
T PRK11663 319 AAGILLSVGSLWLMPFASYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAA-LSGYPLAKVL 397 (434)
T ss_pred HHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHH-HhcccHHHHH
Confidence 111111221211111111111222233334332223345567789999999999999999888888874 6778899999
Q ss_pred hcccCCCCccccCCcccHHHHHHHHHHHHHHHHHH
Q 008482 505 DREASGEGNKCTGTHCFMLSFFIMGSATLCGSLAA 539 (564)
Q Consensus 505 D~~~~~~~~~C~G~~Cy~~af~i~~~l~v~a~vl~ 539 (564)
|..+ |..+|.+.+++++++.++.
T Consensus 398 ~~~g------------~~~~f~~~~~~~~~~~~~~ 420 (434)
T PRK11663 398 EIWH------------WTGFFVVISIAAGISALLL 420 (434)
T ss_pred Hhcc------------cHHHHHHHHHHHHHHHHHH
Confidence 9865 7899988887777766444
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.4e-20 Score=200.59 Aligned_cols=383 Identities=14% Similarity=0.026 Sum_probs=250.2
Q ss_pred hhhchhHHHHHHHHHHHHhcCc-ccccccccHHHHhhcCCCcchhhHHHHhhhhhccc-cccchhhhccccCCCCCCCcc
Q 008482 7 LRLNTRWVSTVASIWIQCTSGS-LYTFSIYSPALKTTQHYDQTTLDTVSVFKDIGANT-GTLSGVLYTYSTSDHSSHHPR 84 (564)
Q Consensus 7 ~~~~~Rw~~l~a~~~i~l~~G~-~Y~fS~ys~~L~~~lg~sq~~~~~i~~a~~vg~~~-g~~~G~l~d~~~~~~~~~~~~ 84 (564)
+..+.+|.++....++..+.+. .+.++...|++++++|+|.+|.+.+.++..++..+ .++.|.+.||+|
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g--------- 78 (406)
T PRK11551 8 ASSSRLALTIGLCFLVALLEGLDLQSAGVAAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIG--------- 78 (406)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---------
Confidence 4556889998888888877665 57889999999999999999999888888888765 577888888765
Q ss_pred chhhhcccCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHhhhcC-CCCcceee
Q 008482 85 QQRLTRLLGPWVVLLVGAIQCFAGYFLMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFP-TYSGTAVG 163 (564)
Q Consensus 85 ~~~~~~~~GP~~~~~iG~vl~~~Gy~~~~l~~~g~i~~~~~~~l~~~~~l~G~g~~~~~ta~l~t~~k~FP-~~RG~a~G 163 (564)
+|.++.++.++..++.++... . .+++.+....++.|.+.+..+.+......++|| ++||++.|
T Consensus 79 ---------~r~~~~~~~~~~~~~~~~~~~-----~--~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 142 (406)
T PRK11551 79 ---------RKRILIVSVALFGLFSLATAQ-----A--WDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVS 142 (406)
T ss_pred ---------CchhHHHHHHHHHHHHHHHHH-----h--ccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 999999999988888776433 2 246667777888899999998888888999997 67999999
Q ss_pred eehhhhhhhHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhhhhheeeeeccCCCCcccccchhHHHHHHHHHHHHHHHHH
Q 008482 164 IMKGFVGLSGAILIQVYQTFFNNKPTSYLLLLALLASIDPLLLMWFVRICNTNEGNEKKHLNSFSLIALIVAAYLMVIII 243 (564)
Q Consensus 164 l~~a~~GLsa~i~s~i~~~~f~~~~~~~llfla~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~y~~~~~~ 243 (564)
+...+..+++.+... .... .....+. +. .+.. ......+
T Consensus 143 ~~~~~~~~g~~~~~~----------------------~~~~----~~~~~~~-----~~---~~~~---~~~~~~~---- 181 (406)
T PRK11551 143 LMYCGVPFGGALASV----------------------IGVL----AAGDAAW-----RH---IFYV---GGVGPLL---- 181 (406)
T ss_pred HHHHHHHHHHHHHHH----------------------HHHH----HccccCH-----HH---HHHH---HHHHHHH----
Confidence 988887777755431 1111 0110000 00 0110 0000000
Q ss_pred HhhhccCchHHHHHHHHHHHHHHhhhhhhhhhccCCCCCCCCcCccccCCCCCCCccchhhhccccCCCCCCCCCCCCCC
Q 008482 244 LEHIFALPFLVRVLTLILLLLLLASPLYVAIRVQGSDSDRTSETSFCEEDELTDDPHEMHAEKMHVRQDPVGYHRLPSEP 323 (564)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~ll~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (564)
.+++. .. ..+.+++. . .+ +.. ++ ++
T Consensus 182 ------------------~~~~~-~~---~l~~~~~~-~-~~------------~~~------------~~-------~~ 206 (406)
T PRK11551 182 ------------------LVPLL-MR---WLPESRAF-A-QA------------AGA------------GK-------QR 206 (406)
T ss_pred ------------------HHHHH-HH---hCCCChhH-H-hc------------cCc------------ch-------hh
Confidence 00000 00 00000000 0 00 000 00 00
Q ss_pred CCCCCCCCCCccCCCCCCcHHHHhhcHHHHHHHHHHHhhhhchhheecchhHHHhhcCCCccchhHHHHHHHHHHHHhhh
Q 008482 324 DVGTDTNDATTSLWGGDLDLLQAICTLEFWILSFAMACGMGSGLATVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRF 403 (564)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~t~~~~l~t~~Fwll~~~~~~~~g~gl~~i~n~~~i~~~~g~~~~~aa~~Vsl~si~n~~GRl 403 (564)
+ . ......+-.+.+..+.++..+++.......+.+..+++.++.|.++.+.+...++..+.+.+|++
T Consensus 207 ~-----------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~ 273 (406)
T PRK11551 207 A-----------P--VLRALFGEGRATATLLLWISYFFTLIVLYFLLNWLPSLLVGQGLSRSQAGLVQIAFNIGGALGSL 273 (406)
T ss_pred h-----------h--hHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhhhhHHHHHHHHHHHHHHH
Confidence 0 0 00000000112334555555555444444555667888888899888888999999999999999
Q ss_pred hhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHH-hcCcchHHHHHHHHHhhhccccchhHHHHHHhhccCchhhhhh
Q 008482 404 GAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIA-SGLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFN 482 (564)
Q Consensus 404 ~~G~lsD~l~~~~~~~R~~~l~~~~~l~~i~~ll~~-~~~~~~l~~~~~l~G~~~G~~~~~~P~ivse~FG~k~fg~nyg 482 (564)
+.|+++||+++| ..+........++.+++. ......+++...+.|++.++.....+.++.|.+..++.|+..|
T Consensus 274 ~~g~l~dr~g~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g 347 (406)
T PRK11551 274 LIGALMDRLRPR------RVVLLIYAGILASLAALAAAPSFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVG 347 (406)
T ss_pred HHHHHHHHHhHH------HHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhh
Confidence 999999999643 233333333444443332 2222345566778899888888999999999999999999999
Q ss_pred hHhhhhhhHHHhhhhhhhhhhhhcccCCCCccccCCcccHHHHHHHHHHHHHHHHHHHH
Q 008482 483 TITIANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSFFIMGSATLCGSLAAFG 541 (564)
Q Consensus 483 ~~~~a~~iG~~lf~~~l~g~iyD~~~~~~~~~C~G~~Cy~~af~i~~~l~v~a~vl~~~ 541 (564)
+......+|.. +++.+.|.++|..++ +...|.+...+++++.++++.
T Consensus 348 ~~~~~~~~g~~-~g~~~~g~l~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~ 394 (406)
T PRK11551 348 AAVAVGRLGSM-AGPLLAGQLLALGRS-----------TVGVIGASIPVILVAALAALL 394 (406)
T ss_pred HHHHhhhHHHH-HHhhhHhhhhccCCc-----------hHHHHHHHHHHHHHHHHHHHH
Confidence 99887788875 678889999998665 677777777777776655543
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.2e-20 Score=193.26 Aligned_cols=381 Identities=15% Similarity=0.023 Sum_probs=242.0
Q ss_pred ccccccccHHHHhhcCCCcchhhHHHHhhhhhccc-cccchhhhccccCCCCCCCccchhhhcccCcHHHHHHHHHHHHH
Q 008482 29 LYTFSIYSPALKTTQHYDQTTLDTVSVFKDIGANT-GTLSGVLYTYSTSDHSSHHPRQQRLTRLLGPWVVLLVGAIQCFA 107 (564)
Q Consensus 29 ~Y~fS~ys~~L~~~lg~sq~~~~~i~~a~~vg~~~-g~~~G~l~d~~~~~~~~~~~~~~~~~~~~GP~~~~~iG~vl~~~ 107 (564)
.+.++...|.+++++|+|..|...+..+..++... .++.|.+.||+| +|.++.++.++..+
T Consensus 10 ~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g------------------~r~~~~~~~~~~~~ 71 (399)
T TIGR00893 10 RANLSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFG------------------ARKTLAVFIVIWGV 71 (399)
T ss_pred HHhhhHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcC------------------cceeeHHHHHHHHH
Confidence 45778888999999999999999888888888765 677888888765 89999999999998
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHhhhcC-CCCcceeeeehhhhhhhHHHHHHHHHhhcCC
Q 008482 108 GYFLMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFP-TYSGTAVGIMKGFVGLSGAILIQVYQTFFNN 186 (564)
Q Consensus 108 Gy~~~~l~~~g~i~~~~~~~l~~~~~l~G~g~~~~~ta~l~t~~k~FP-~~RG~a~Gl~~a~~GLsa~i~s~i~~~~f~~ 186 (564)
+..++... .+++.+....++.|.|.+..+++......+++| ++||++.|+.....++++.+...+....
T Consensus 72 ~~~~~~~~-------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l--- 141 (399)
T TIGR00893 72 FTGLQAFA-------GAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWI--- 141 (399)
T ss_pred HHHHHHHH-------cCHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHH---
Confidence 88875443 246777788889999999999999999999998 5799999999999888887654222111
Q ss_pred CchhHHHHHHHHHHHHhhhhheeeeeccCCCCcccccchhHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHH
Q 008482 187 KPTSYLLLLALLASIDPLLLMWFVRICNTNEGNEKKHLNSFSLIALIVAAYLMVIIILEHIFALPFLVRVLTLILLLLLL 266 (564)
Q Consensus 187 ~~~~~llfla~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 266 (564)
.+..+.+ ..+.. .++..++ ..++.
T Consensus 142 -----------------------~~~~~~~--------~~~~~----~~~~~~~---------------------~~~~~ 165 (399)
T TIGR00893 142 -----------------------LIHFSWQ--------WAFII----EGVLGII---------------------WGVLW 165 (399)
T ss_pred -----------------------HHhCCch--------HHHHH----HHHHHHH---------------------HHHHh
Confidence 1111111 00110 0000000 00000
Q ss_pred hhhhhhhhhccCCCCCCCCcCccccCCCCCCCccchhhhccccCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCcHHHH
Q 008482 267 ASPLYVAIRVQGSDSDRTSETSFCEEDELTDDPHEMHAEKMHVRQDPVGYHRLPSEPDVGTDTNDATTSLWGGDLDLLQA 346 (564)
Q Consensus 267 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~ 346 (564)
....+.++++ .+.. +++ + ++....+...+. ..++ +.+....+.++.
T Consensus 166 ----~~~~~~~~~~-~~~~---~~~----------~-~~~~~~~~~~~~----~~~~-----------~~~~~~~~~~~~ 211 (399)
T TIGR00893 166 ----LKFIPDPPQK-AKWL---TEE----------E-KYIVVGGLLAEQ----QGKG-----------PSTPKKYQIKEL 211 (399)
T ss_pred ----hheecCCCCc-cccC---CHH----------H-Hhhcchhhcccc----cccc-----------ccCCCccchHHH
Confidence 0000110000 0000 000 0 000000000000 0000 001123356889
Q ss_pred hhcHHHHHHHHHHHhhhhchhheecchhHHHhh-cCCCccchhHHHHHHHHHHHHhhhhhhhhhhhhhhcccCchhHHHH
Q 008482 347 ICTLEFWILSFAMACGMGSGLATVNNISQIGGS-LGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMV 425 (564)
Q Consensus 347 l~t~~Fwll~~~~~~~~g~gl~~i~n~~~i~~~-~g~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~R~~~l~ 425 (564)
++++++|.+.+..++.......+....+++.++ .|.++.+.+...++..+.+.+|+++.|+++||+++|+. +.....
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~~ 289 (399)
T TIGR00893 212 LKDRRVWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGK--SLVFAR 289 (399)
T ss_pred hcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhccc--chhHHH
Confidence 999999999999888877777777777777764 68887778888999999999999999999999987641 111111
Q ss_pred HHHHHH--HHHHHHHHhc--CcchHHHHHHHHHhhhccccchhHHHHHHhhccCchhhhhhhHhhhhhhHHHhhhhhhhh
Q 008482 426 ITLAAM--SIGHLIIASG--LPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVG 501 (564)
Q Consensus 426 ~~~~l~--~i~~ll~~~~--~~~~l~~~~~l~G~~~G~~~~~~P~ivse~FG~k~fg~nyg~~~~a~~iG~~lf~~~l~g 501 (564)
....+. ..+....... ......+...+++....+.......+++|.+..++.|+.+|+......+|.. +++.+.|
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~-~~~~i~g 368 (399)
T TIGR00893 290 KTAIIAGLVLSLLMFATNYVNIPYAALALVALGFFGLGAGAIGWALISDNAPGNIAGLTGGLINSLGNLGGI-VGPIVIG 368 (399)
T ss_pred HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhchhhhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhh-hhhHHhh
Confidence 111111 1111111111 1112233333333333337888889999999999999999999887788875 5777899
Q ss_pred hhhhcccCCCCccccCCcccHHHHHHHHHHHHHHHHHHHH
Q 008482 502 YIYDREASGEGNKCTGTHCFMLSFFIMGSATLCGSLAAFG 541 (564)
Q Consensus 502 ~iyD~~~~~~~~~C~G~~Cy~~af~i~~~l~v~a~vl~~~ 541 (564)
.++|..++ |+..|.+.+++++++.++.++
T Consensus 369 ~l~~~~g~-----------~~~~~~~~~~~~~~~~~~~~~ 397 (399)
T TIGR00893 369 AIAATTGS-----------FAGALMVVAALALIGALSYLL 397 (399)
T ss_pred hhccCCCc-----------hhHHHHHHHHHHHHHHHHHHH
Confidence 99998765 789999888888777755543
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.6e-19 Score=190.93 Aligned_cols=374 Identities=11% Similarity=0.088 Sum_probs=242.8
Q ss_pred chhHHHHHHHHHHHHhc-CcccccccccHHHHhhcCCCcchhhHHHHhhhhhccc-cccchhhhccccCCCCCCCccchh
Q 008482 10 NTRWVSTVASIWIQCTS-GSLYTFSIYSPALKTTQHYDQTTLDTVSVFKDIGANT-GTLSGVLYTYSTSDHSSHHPRQQR 87 (564)
Q Consensus 10 ~~Rw~~l~a~~~i~l~~-G~~Y~fS~ys~~L~~~lg~sq~~~~~i~~a~~vg~~~-g~~~G~l~d~~~~~~~~~~~~~~~ 87 (564)
.|||.....+.+...+. +..+.++..-|++++++|+|.+|...+.....++..+ .++.|.+.||+|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g------------ 70 (394)
T PRK03699 3 SNRIKLTWISFLSYALTGALVIVTGMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIP------------ 70 (394)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh------------
Confidence 46776665555555555 4468899999999999999999999887777777765 457788888764
Q ss_pred hhcccCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHhhhcCC-CCcceeeeeh
Q 008482 88 LTRLLGPWVVLLVGAIQCFAGYFLMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFPT-YSGTAVGIMK 166 (564)
Q Consensus 88 ~~~~~GP~~~~~iG~vl~~~Gy~~~~l~~~g~i~~~~~~~l~~~~~l~G~g~~~~~ta~l~t~~k~FP~-~RG~a~Gl~~ 166 (564)
+|.++.++.++..++..+... . ++++.+....++.|.+.+..+..+.....++||+ +||.+.++..
T Consensus 71 ------~r~~~~~~~~~~~i~~~l~~~-----~--~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~ 137 (394)
T PRK03699 71 ------LKRQLIFGFALMILAVAGLMF-----S--HSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTD 137 (394)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHH-----c--chHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHH
Confidence 999999999998888887432 2 2466666677788888888888777888899985 6999998887
Q ss_pred hhhhhhHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhhhhheeeeeccCCCCcccccchhHHHHHHHHHHHHHHHHHHhh
Q 008482 167 GFVGLSGAILIQVYQTFFNNKPTSYLLLLALLASIDPLLLMWFVRICNTNEGNEKKHLNSFSLIALIVAAYLMVIIILEH 246 (564)
Q Consensus 167 a~~GLsa~i~s~i~~~~f~~~~~~~llfla~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~y~~~~~~~~~ 246 (564)
+.+++++.+.. .....+. .+..+.+ ..+.. .++..++
T Consensus 138 ~~~~~g~~~~~----------------------~~~~~l~---~~~~gw~--------~~f~~----~~~~~~~------ 174 (394)
T PRK03699 138 SFFSMAGMIFP----------------------IIAAYLL---ARSIEWY--------WVYAC----IGLVYVA------ 174 (394)
T ss_pred HHHHHHHHHHH----------------------HHHHHHH---hccccHH--------HHHHH----HHHHHHH------
Confidence 88888876643 2211100 0000110 00110 0000000
Q ss_pred hccCchHHHHHHHHHHHHHHhhhhhhhhhccCCCCCCCCcCccccCCCCCCCccchhhhccccCCCCCCCCCCCCCCCCC
Q 008482 247 IFALPFLVRVLTLILLLLLLASPLYVAIRVQGSDSDRTSETSFCEEDELTDDPHEMHAEKMHVRQDPVGYHRLPSEPDVG 326 (564)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~ll~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (564)
. +++... .+.| +. ++ + + +++ +.+
T Consensus 175 ---------------~-~~~~~~----~~~p-~~---~~------------~-~------------~~~------~~~-- 197 (394)
T PRK03699 175 ---------------I-FILTLF----SEFP-AL---GK------------H-A------------PKA------DKP-- 197 (394)
T ss_pred ---------------H-HHHHHh----cCCc-cc---cc------------c-C------------ccc------cCc--
Confidence 0 000000 0000 00 00 0 0 000 000
Q ss_pred CCCCCCCccCCCCCCcHHHHhhcHHHHHHHHHHHhhhhchhheecchhHHHhh-cCCCccchhHHHHHHHHHHHHhhhhh
Q 008482 327 TDTNDATTSLWGGDLDLLQAICTLEFWILSFAMACGMGSGLATVNNISQIGGS-LGYSSFETSSLISLWSIWNFLGRFGA 405 (564)
Q Consensus 327 ~~~~~~~~~~~~~~~t~~~~l~t~~Fwll~~~~~~~~g~gl~~i~n~~~i~~~-~g~~~~~aa~~Vsl~si~n~~GRl~~ 405 (564)
..+. ..++.+|++.+.+++.......+.+-++.+.++ .|+++.+++..++++.+++.+||++.
T Consensus 198 ---------~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~ 261 (394)
T PRK03699 198 ---------VAKE-------KWGIGVLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIF 261 (394)
T ss_pred ---------cccc-------cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHH
Confidence 0000 124678888887777655544555667777854 69988888999999999999999999
Q ss_pred hhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHH-hcCcchHHHHHHHHHhhhccccchhHHHHHHhhccCchhhhhhhH
Q 008482 406 GYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIA-SGLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTI 484 (564)
Q Consensus 406 G~lsD~l~~~~~~~R~~~l~~~~~l~~i~~ll~~-~~~~~~l~~~~~l~G~~~G~~~~~~P~ivse~FG~k~fg~nyg~~ 484 (564)
|+++||+++| ..+.....+..+..+++. ...+..+.+...+.|++.++.+++..+...|.. .++.++..|.+
T Consensus 262 g~l~dr~~~~------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~ 334 (394)
T PRK03699 262 SFIVRFFDLQ------RILTVLAGLALVLMYLFVNTDDPSHLLYAILGLGFFSSAIYTTIITLGSQQT-KVASPKLVNFI 334 (394)
T ss_pred HHHHHHhchh------hHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cCCCHHHHHHH
Confidence 9999999543 223333334444333332 222334555677889988888888887777755 56678888888
Q ss_pred hhhhhhHHHhhhhhhhhhhhhcccCCCCccccCCcccHHHHHHHHHHHHHHHHHHHHHHH
Q 008482 485 TIANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSFFIMGSATLCGSLAAFGLFL 544 (564)
Q Consensus 485 ~~a~~iG~~lf~~~l~g~iyD~~~~~~~~~C~G~~Cy~~af~i~~~l~v~a~vl~~~l~~ 544 (564)
.....+|.. +++.+.|+++|..+ ++.+|++..++++++.++++.+.+
T Consensus 335 ~~~~~~g~~-i~p~~~G~l~~~~g------------~~~~~~~~~~~~~~~~~~~~~~~~ 381 (394)
T PRK03699 335 LTCGTIGTM-LTFVVTSPIVAHFG------------LQAALLTANGLYAVVFVMCILLGF 381 (394)
T ss_pred HHhhhHHHH-HHHHHHHHHHHHhC------------chhhhhhhHHHHHHHHHHHHHHHH
Confidence 877777875 57778999999866 588998888888888766655543
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.7e-19 Score=192.68 Aligned_cols=405 Identities=15% Similarity=0.110 Sum_probs=235.0
Q ss_pred chhHHHHHHHHHHHHhcCc-ccccccccHHHHhhcCCCcchhhHHHHhhhhhccc-cccchhhhccccCCCCCCCccchh
Q 008482 10 NTRWVSTVASIWIQCTSGS-LYTFSIYSPALKTTQHYDQTTLDTVSVFKDIGANT-GTLSGVLYTYSTSDHSSHHPRQQR 87 (564)
Q Consensus 10 ~~Rw~~l~a~~~i~l~~G~-~Y~fS~ys~~L~~~lg~sq~~~~~i~~a~~vg~~~-g~~~G~l~d~~~~~~~~~~~~~~~ 87 (564)
+.||..+.+..+...+... ...++...|.+++ +|+|++|...+..+..++..+ .++.|.+.||+|
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g------------ 89 (438)
T TIGR00712 23 RLRWQVFLGIFFGYAAYYLVRKNFALAMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSN------------ 89 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccHHhhhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccC------------
Confidence 3467666655555544433 3456667788887 599999999887777777755 578888888875
Q ss_pred hhcccCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHhhhcC-CCCcceeeeeh
Q 008482 88 LTRLLGPWVVLLVGAIQCFAGYFLMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFP-TYSGTAVGIMK 166 (564)
Q Consensus 88 ~~~~~GP~~~~~iG~vl~~~Gy~~~~l~~~g~i~~~~~~~l~~~~~l~G~g~~~~~ta~l~t~~k~FP-~~RG~a~Gl~~ 166 (564)
+|.++.++.++..++.+++... .... .+++.++...++.|.+.+..+.+......++|| ++||++.|+..
T Consensus 90 ------~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~ 160 (438)
T TIGR00712 90 ------PRVFLPAGLILSAAVMLLMGFV--PWAT-SSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWN 160 (438)
T ss_pred ------CceehHHHHHHHHHHHHHHhcc--cccc-chHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHH
Confidence 8889999999999988875332 1111 245666666777888888888877888889997 57999999988
Q ss_pred hhhhhhHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhhhhheeeeeccCCCCcccccchhHHHHHHHHHHHHHHHHHHhh
Q 008482 167 GFVGLSGAILIQVYQTFFNNKPTSYLLLLALLASIDPLLLMWFVRICNTNEGNEKKHLNSFSLIALIVAAYLMVIIILEH 246 (564)
Q Consensus 167 a~~GLsa~i~s~i~~~~f~~~~~~~llfla~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~y~~~~~~~~~ 246 (564)
...++++.+...+. ...+. ...+.+ . .|.. .++..++.
T Consensus 161 ~~~~~g~~~~~~l~---------------------~~~~~----~~~~w~-----~---~f~~----~~~~~~i~----- 198 (438)
T TIGR00712 161 CAHNIGGGIPPLLV---------------------LLGMA----WFNDWH-----A---ALYF----PAICAIIV----- 198 (438)
T ss_pred HHHHhHhHHHHHHH---------------------HHHHH----HhhhhH-----H---HHHH----HHHHHHHH-----
Confidence 88888776643211 10000 000000 0 0110 01010000
Q ss_pred hccCchHHHHHHHHHHHHHHhhhhhhhhhccCCCCCCCCcCccccCCCCCCCccchhhhccccCCCCCCCCCCCCCCCCC
Q 008482 247 IFALPFLVRVLTLILLLLLLASPLYVAIRVQGSDSDRTSETSFCEEDELTDDPHEMHAEKMHVRQDPVGYHRLPSEPDVG 326 (564)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~ll~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (564)
.++. . ...+.++++...++ .+.. +. +.+++. .++++
T Consensus 199 ----------------~~~~--~--~~~~~~~~~~~~~~------~~~~------------~~-~~~~~~---~~~~~-- 234 (438)
T TIGR00712 199 ----------------ALFA--F--AMMRDTPQSCGLPP------IEEY------------RN-DYPDDY---NEKAE-- 234 (438)
T ss_pred ----------------HHHH--H--HhccCCHHhcCCCC------chhc------------cc-cccccc---ccccc--
Confidence 0000 0 00111110000000 0000 00 000000 00000
Q ss_pred CCCCCCCccCCCCCCcHHHHhhcHHHHHHHHHHHhhhhchhheecchhHHHhh-cCCCccchhHHHHHHHHHHHHhhhhh
Q 008482 327 TDTNDATTSLWGGDLDLLQAICTLEFWILSFAMACGMGSGLATVNNISQIGGS-LGYSSFETSSLISLWSIWNFLGRFGA 405 (564)
Q Consensus 327 ~~~~~~~~~~~~~~~t~~~~l~t~~Fwll~~~~~~~~g~gl~~i~n~~~i~~~-~g~~~~~aa~~Vsl~si~n~~GRl~~ 405 (564)
. +...++...++.++++.+|.+.+..++.......+...++++.++ .|+++.+++...+++++.+.+|++++
T Consensus 235 ------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~ 307 (438)
T TIGR00712 235 ------Q-ELTAKEIFMQYVLPNKLLWYIAIANVFVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLC 307 (438)
T ss_pred ------c-ccchHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHH
Confidence 0 000011112357899999999887776655545566678888876 58888888888999999999999999
Q ss_pred hhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHhc---CcchHHHHHHHHHhhhccccchhHHHHHHhhccCchhhhhh
Q 008482 406 GYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIASG---LPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFN 482 (564)
Q Consensus 406 G~lsD~l~~~~~~~R~~~l~~~~~l~~i~~ll~~~~---~~~~l~~~~~l~G~~~G~~~~~~P~ivse~FG~k~fg~nyg 482 (564)
|+++||+++++. ............++.+++... .+...++...+.|+...+.....-..+.|.++.|+.|+..|
T Consensus 308 g~l~dr~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g 384 (438)
T TIGR00712 308 GWMSDKVFKGNR---GATGVFFMTLVTIAVIVYWMNPAGNPLVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAG 384 (438)
T ss_pred HHHHHHhccCcc---cHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHccHHHHHHHHHHHhcChhheeeehh
Confidence 999999965322 111111111122222222111 11122223333444322222222346789999999999999
Q ss_pred hHhhhhhhHHHhhhhhhhhhhhhcccCCCCccccCCcccHHHHHHHHHHHHHHHHHHHHHHH
Q 008482 483 TITIANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSFFIMGSATLCGSLAAFGLFL 544 (564)
Q Consensus 483 ~~~~a~~iG~~lf~~~l~g~iyD~~~~~~~~~C~G~~Cy~~af~i~~~l~v~a~vl~~~l~~ 544 (564)
+......+|...+++.+.|.+.|..+ |..+|.+..+.+++++++.+++..
T Consensus 385 ~~~~~~~~gg~~~gp~l~G~l~~~~g------------~~~~~~~~~~~~~~~~~~~~~~~~ 434 (438)
T TIGR00712 385 FTGLFGYLGGSVAASAIVGYTVDFFG------------WDGGFMVMIGGSILAVILLIVVMI 434 (438)
T ss_pred hhchHHHhhhhhhcchhHHHHHHhcc------------chHHHHHHHHHHHHHHHHHHHHHh
Confidence 98765555544457778999999754 799999998888888877765544
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=9.2e-19 Score=186.20 Aligned_cols=366 Identities=11% Similarity=0.016 Sum_probs=231.7
Q ss_pred hhHHHHHHHHHHHHhc-CcccccccccHHHHhhcCCCcchhhHHHHhhhhhccc-cccchhhhccccCCCCCCCccchhh
Q 008482 11 TRWVSTVASIWIQCTS-GSLYTFSIYSPALKTTQHYDQTTLDTVSVFKDIGANT-GTLSGVLYTYSTSDHSSHHPRQQRL 88 (564)
Q Consensus 11 ~Rw~~l~a~~~i~l~~-G~~Y~fS~ys~~L~~~lg~sq~~~~~i~~a~~vg~~~-g~~~G~l~d~~~~~~~~~~~~~~~~ 88 (564)
+||..+..-.+.+... -..|.-+..-|++++++|+|++|+..+.+...++..+ .++.|.+.||+|
T Consensus 6 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g------------- 72 (390)
T PRK03545 6 VAWLRVVTLALAAFIFNTTEFVPVGLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVE------------- 72 (390)
T ss_pred cchHHHHHHHHHHHHHHhHHHHHHcchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-------------
Confidence 4565433333333332 3334445567899999999999999877777666654 577888888765
Q ss_pred hcccCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHhhhcC-CCCcceeeeehh
Q 008482 89 TRLLGPWVVLLVGAIQCFAGYFLMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFP-TYSGTAVGIMKG 167 (564)
Q Consensus 89 ~~~~GP~~~~~iG~vl~~~Gy~~~~l~~~g~i~~~~~~~l~~~~~l~G~g~~~~~ta~l~t~~k~FP-~~RG~a~Gl~~a 167 (564)
+|+++.++.++..++..+.. .. ++++.+...-++.|.+.+..+........+++| ++||++.|+...
T Consensus 73 -----~r~~~~~~~~~~~~~~~~~~-----~~--~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~ 140 (390)
T PRK03545 73 -----RRKLLIGLFVLFIASHVLSA-----LA--WNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLAT 140 (390)
T ss_pred -----hHHHHHHHHHHHHHHHHHHH-----Hh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHH
Confidence 99999999999999987743 23 356777777778888888888887788889997 689999999888
Q ss_pred hhhhhHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhhhhheeeeeccCCCCcccccchhHHHHHHHHHHHHHHHHHHhhh
Q 008482 168 FVGLSGAILIQVYQTFFNNKPTSYLLLLALLASIDPLLLMWFVRICNTNEGNEKKHLNSFSLIALIVAAYLMVIIILEHI 247 (564)
Q Consensus 168 ~~GLsa~i~s~i~~~~f~~~~~~~llfla~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~y~~~~~~~~~~ 247 (564)
+.+++..+- |.+...+. +..+.+ ..|.. ..+.+.+.
T Consensus 141 ~~~~g~~ig----------------------~~l~~~l~----~~~gw~--------~~f~~---~~~~~~l~------- 176 (390)
T PRK03545 141 GTALAMVLG----------------------LPLGRVIG----QYLGWR--------TTFLA---IGGGALIT------- 176 (390)
T ss_pred HHHHHHHHH----------------------hhHHHHHH----HHhcHH--------HHHHH---HHHHHHHH-------
Confidence 888877654 22221111 100110 00110 00000000
Q ss_pred ccCchHHHHHHHHHHHHHHhhhhhhhhhccCCCCCCCCcCccccCCCCCCCccchhhhccccCCCCCCCCCCCCCCCCCC
Q 008482 248 FALPFLVRVLTLILLLLLLASPLYVAIRVQGSDSDRTSETSFCEEDELTDDPHEMHAEKMHVRQDPVGYHRLPSEPDVGT 327 (564)
Q Consensus 248 ~~~~~~~~~~~~~~~~~ll~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (564)
. ..... ..+ ++ + ++ ++.
T Consensus 177 ---------------~----~~~~~--~~~-~~------------------~--------------~~------~~~--- 193 (390)
T PRK03545 177 ---------------L----LLLIK--LLP-LL------------------P--------------SE------HSG--- 193 (390)
T ss_pred ---------------H----HHHHH--hCC-CC------------------C--------------CC------Ccc---
Confidence 0 00000 000 00 0 00 000
Q ss_pred CCCCCCccCCCCCCcHHHHhhcHHHHHHHHHHHhhhhchhheecchhHHHhh-cCCCccchhHHHHHHHHHHHHhhhhhh
Q 008482 328 DTNDATTSLWGGDLDLLQAICTLEFWILSFAMACGMGSGLATVNNISQIGGS-LGYSSFETSSLISLWSIWNFLGRFGAG 406 (564)
Q Consensus 328 ~~~~~~~~~~~~~~t~~~~l~t~~Fwll~~~~~~~~g~gl~~i~n~~~i~~~-~g~~~~~aa~~Vsl~si~n~~GRl~~G 406 (564)
...+.++.+|++.+|..+...++......+..+.+.++.++ .|+++.+++...+++++.+.+|++..|
T Consensus 194 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g 262 (390)
T PRK03545 194 -----------SLKSLPLLFRRPALVSLYLLTVVVVTAHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFS 262 (390)
T ss_pred -----------hHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 01135688999999987766655544444444556667666 588888888899999999999999999
Q ss_pred hhhhhhhhcccCchhHHHHHHHHHHHHHHHHH-H-hcCcchHHHHHHHHHhhhccccchhHHHHHHhhccCchhhhhhhH
Q 008482 407 YVSDYFLHVKEWARPLFMVITLAAMSIGHLII-A-SGLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTI 484 (564)
Q Consensus 407 ~lsD~l~~~~~~~R~~~l~~~~~l~~i~~ll~-~-~~~~~~l~~~~~l~G~~~G~~~~~~P~ivse~FG~k~fg~nyg~~ 484 (564)
+++||.++ .... ....+..++.+++ . ...+..+++..++.|++.+.........+.+... ++.|+..|+.
T Consensus 263 ~l~dr~~~------~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~ 334 (390)
T PRK03545 263 RLGNRHPS------GFLL-IAIALLLVCLLLLLPAANSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAP-DATDVAMALF 334 (390)
T ss_pred HHhhccch------hHHH-HHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhcchHHHHHHHHHhCC-CcHHHHHHHH
Confidence 99999842 2222 2223333333222 2 2223345667788899888777777788888765 5677767766
Q ss_pred hhhhhhHHHhhhhhhhhhhhhcccCCCCccccCCcccHHHHHHHHHHHHHHHHHHH
Q 008482 485 TIANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSFFIMGSATLCGSLAAF 540 (564)
Q Consensus 485 ~~a~~iG~~lf~~~l~g~iyD~~~~~~~~~C~G~~Cy~~af~i~~~l~v~a~vl~~ 540 (564)
.....+|.. .++.+.|.++|..+ ++.+|.+.+.+.+++++...
T Consensus 335 ~~~~~~g~~-~G~~~~G~~~~~~g------------~~~~~~~~~~~~~~~~~~~~ 377 (390)
T PRK03545 335 SGIFNIGIG-AGALLGNQVSLHLG------------LSSIGYVGAALALAALVWSI 377 (390)
T ss_pred HHHHHHHHH-HHHHHHHHHHhccC------------hhHHHHHHHHHHHHHHHHHH
Confidence 544444443 35557999999876 68999988888888776654
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.8e-19 Score=193.87 Aligned_cols=399 Identities=12% Similarity=0.034 Sum_probs=234.0
Q ss_pred hHHHHHHHHHHHHh-cCcccccccccHHHHhhcCCCcchhhHHHHhhhhhccc-cccchhhhccccCCCCCCCccchhhh
Q 008482 12 RWVSTVASIWIQCT-SGSLYTFSIYSPALKTTQHYDQTTLDTVSVFKDIGANT-GTLSGVLYTYSTSDHSSHHPRQQRLT 89 (564)
Q Consensus 12 Rw~~l~a~~~i~l~-~G~~Y~fS~ys~~L~~~lg~sq~~~~~i~~a~~vg~~~-g~~~G~l~d~~~~~~~~~~~~~~~~~ 89 (564)
||..+....+.-.+ .=-.+..+.-.|++++++|+|.+|+..+.++..++..+ .++.|.+.||+|
T Consensus 6 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G-------------- 71 (412)
T TIGR02332 6 FRRLIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIG-------------- 71 (412)
T ss_pred hhHHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhC--------------
Confidence 45443333333333 22345667778999999999999999888888888765 578888888875
Q ss_pred cccCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHhhhcC-CCCcceeeeehhh
Q 008482 90 RLLGPWVVLLVGAIQCFAGYFLMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFP-TYSGTAVGIMKGF 168 (564)
Q Consensus 90 ~~~GP~~~~~iG~vl~~~Gy~~~~l~~~g~i~~~~~~~l~~~~~l~G~g~~~~~ta~l~t~~k~FP-~~RG~a~Gl~~a~ 168 (564)
+|.++.++.++.+++..+..+ . ++++.++..-++.|.+.+..+.+......+||| ++||++.|+...+
T Consensus 72 ----~r~~~~~~~~~~~~~~~~~~~-----~--~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~ 140 (412)
T TIGR02332 72 ----ARRWIAGIMVLWGIASTATMF-----A--TGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIA 140 (412)
T ss_pred ----hHHHHHHHHHHHHHHHHHHHH-----h--cCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 999999999999999988533 2 245667777888999999888888888899998 5799999999998
Q ss_pred hhhhHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhhhhheeeeeccCCCCcccccchhHHHHHHHHHHHHHHHHHHhhhc
Q 008482 169 VGLSGAILIQVYQTFFNNKPTSYLLLLALLASIDPLLLMWFVRICNTNEGNEKKHLNSFSLIALIVAAYLMVIIILEHIF 248 (564)
Q Consensus 169 ~GLsa~i~s~i~~~~f~~~~~~~llfla~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~y~~~~~~~~~~~ 248 (564)
.+++..+... +... +++..+.. +....+ ..|.. .++..++
T Consensus 141 ~~~g~~~~~~----------------------~~~~----l~~~~~~~-~~~gwr-~~f~~----~~~~~l~-------- 180 (412)
T TIGR02332 141 MPVTMALGLI----------------------LSGY----ILALDGLM-ALKGWQ-WLFLL----EGFPSVI-------- 180 (412)
T ss_pred HHHHHHHHHH----------------------HHHH----HHhCCCCC-Cccchh-HHHHH----HHHHHHH--------
Confidence 8888866432 2111 01100000 000000 00110 0000000
Q ss_pred cCchHHHHHHHHHHHHHHhhhhhhhhhccCCCCCCCCcCccccCCCCCCCccchhhhccccCCCCCCCCCCCCCCCCCCC
Q 008482 249 ALPFLVRVLTLILLLLLLASPLYVAIRVQGSDSDRTSETSFCEEDELTDDPHEMHAEKMHVRQDPVGYHRLPSEPDVGTD 328 (564)
Q Consensus 249 ~~~~~~~~~~~~~~~~ll~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (564)
.........++++++ .+. +.+++.+.. ++..++.+.+ . ++++. ..
T Consensus 181 -----------------~~~~~~~~~~~~p~~-~~~----------l~~~~~~~~-~~~~~~~~~~----~-~~~~~-~~ 225 (412)
T TIGR02332 181 -----------------LGVMTWFWLDDSPDK-AKW----------LDEEDKKAL-KEMIDNDQLT----L-EQPEG-AF 225 (412)
T ss_pred -----------------HHHHHhhccCCCccc-CCC----------CCHHHHHHH-HHHHHhcccc----c-ccccc-cc
Confidence 000000011111111 000 000000000 0000000000 0 00000 00
Q ss_pred CCCCCccCCCCCCcHHHHhhcHHHHHHHHHHHhhhhchhheecchhHHHhhc--CCCccchhHHHHHHHHHHHHhhhhhh
Q 008482 329 TNDATTSLWGGDLDLLQAICTLEFWILSFAMACGMGSGLATVNNISQIGGSL--GYSSFETSSLISLWSIWNFLGRFGAG 406 (564)
Q Consensus 329 ~~~~~~~~~~~~~t~~~~l~t~~Fwll~~~~~~~~g~gl~~i~n~~~i~~~~--g~~~~~aa~~Vsl~si~n~~GRl~~G 406 (564)
+.+ .......+++ ++++.+|...+.+++....-..+.+.++++.++. |+++.+++...++..+++.+|+++.|
T Consensus 226 ---~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g 300 (412)
T TIGR02332 226 ---AHA-AMPQRSMLRE-IFTPAIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWS 300 (412)
T ss_pred ---ccc-cccHHHHHHH-hcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHH
Confidence 000 0000112333 4578999999999888777777788899999885 56666777888999999999999999
Q ss_pred hhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHhcCcchHH-HHHHHHHhhhccccchhHHHHHHhhccCchhhhhhhHh
Q 008482 407 YVSDYFLHVKEWARPLFMVITLAAMSIGHLIIASGLPGALY-AGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTIT 485 (564)
Q Consensus 407 ~lsD~l~~~~~~~R~~~l~~~~~l~~i~~ll~~~~~~~~l~-~~~~l~G~~~G~~~~~~P~ivse~FG~k~fg~nyg~~~ 485 (564)
+++||+++| ...+...+.+.+++.++.......... .+..+.+++......+......|.|+.|+.|+.+|+..
T Consensus 301 ~l~dr~~~r-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~ 375 (412)
T TIGR02332 301 RHSDRLKER-----KHHTALPYLFAAAGWLLASATDHNLIQLLGIIMASMGSFSAMAIFWTTPDQSISLQARAIAIAVIN 375 (412)
T ss_pred HHhcccCcc-----HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhhhHHHhhcccccchHHHHHHHHHHH
Confidence 999999643 222223333444443322222111222 22223333333333344455578899999999999998
Q ss_pred hhhhhHHHhhhhhhhhhhhhcccCCCCccccCCcccHHHHHHHHHHH
Q 008482 486 IANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSFFIMGSAT 532 (564)
Q Consensus 486 ~a~~iG~~lf~~~l~g~iyD~~~~~~~~~C~G~~Cy~~af~i~~~l~ 532 (564)
....+|.. +++.+.|.+.|..++ |+.+|.+..++.
T Consensus 376 ~~~~~g~~-~~p~~~g~i~~~~g~-----------~~~~~~~~~~~~ 410 (412)
T TIGR02332 376 ATGNIGSA-LSPFLIGILKDATGS-----------FNSGLWFVAALL 410 (412)
T ss_pred Hhhhhhhh-hhhhhcccccccCCC-----------CchhHHHHHHHH
Confidence 87778774 577789999999877 788888666544
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.82 E-value=1e-18 Score=181.81 Aligned_cols=359 Identities=17% Similarity=0.148 Sum_probs=223.7
Q ss_pred cccccccccHHHHhhcCCCcchhhHHHHhhhhhccc-cccchhhhccccCCCCCCCccchhhhcccCcHHHHHHHHHHHH
Q 008482 28 SLYTFSIYSPALKTTQHYDQTTLDTVSVFKDIGANT-GTLSGVLYTYSTSDHSSHHPRQQRLTRLLGPWVVLLVGAIQCF 106 (564)
Q Consensus 28 ~~Y~fS~ys~~L~~~lg~sq~~~~~i~~a~~vg~~~-g~~~G~l~d~~~~~~~~~~~~~~~~~~~~GP~~~~~iG~vl~~ 106 (564)
....++...|.+++++|+|..|...+..+..++..+ .++.|.+.||+| +|.++.+|.++..
T Consensus 10 ~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g------------------~r~~~~~~~~~~~ 71 (379)
T TIGR00881 10 VRKNFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSN------------------PRVFLPIGLILCA 71 (379)
T ss_pred hHHhhhhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhC------------------CeehhHHHHHHHH
Confidence 345678888999999999999999888888888765 678888888765 8999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHhhhcCC-CCcceeeeehhhhhhhHHHHHHHHHhhcC
Q 008482 107 AGYFLMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFPT-YSGTAVGIMKGFVGLSGAILIQVYQTFFN 185 (564)
Q Consensus 107 ~Gy~~~~l~~~g~i~~~~~~~l~~~~~l~G~g~~~~~ta~l~t~~k~FP~-~RG~a~Gl~~a~~GLsa~i~s~i~~~~f~ 185 (564)
++.++.... .+++.++...++.|.+.+..+........+++|+ +||.+.|+...+..+++.+...
T Consensus 72 ~~~~~~~~~-------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~------- 137 (379)
T TIGR00881 72 IVNLFFGFS-------TSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPP------- 137 (379)
T ss_pred HHHHHHHHh-------hhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHH-------
Confidence 999886543 2467777788888999999999988899999985 7999999999998888866531
Q ss_pred CCchhHHHHHHHHHHHHhhhhheeeeeccCCCCcccccchhHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHH
Q 008482 186 NKPTSYLLLLALLASIDPLLLMWFVRICNTNEGNEKKHLNSFSLIALIVAAYLMVIIILEHIFALPFLVRVLTLILLLLL 265 (564)
Q Consensus 186 ~~~~~~llfla~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~l 265 (564)
..... +....+.+ .. +.. .++..++. .++
T Consensus 138 --------------~~~~~----~~~~~~~~-----~~---~~~----~~~~~~~~---------------------~~~ 166 (379)
T TIGR00881 138 --------------LVLFG----IAELYSWH-----WV---FIV----PGIIAIIV---------------------SLI 166 (379)
T ss_pred --------------HHHHH----HHhcCCch-----hH---HHH----HHHHHHHH---------------------HHH
Confidence 11110 00000100 00 110 00000000 000
Q ss_pred HhhhhhhhhhccCCCCCCCCcCccccCCCCCCCccchhhhccccCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCcHHH
Q 008482 266 LASPLYVAIRVQGSDSDRTSETSFCEEDELTDDPHEMHAEKMHVRQDPVGYHRLPSEPDVGTDTNDATTSLWGGDLDLLQ 345 (564)
Q Consensus 266 l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~ 345 (564)
.. ...+.++++...++ +++ .++ ++++++. ++++ +.....+...++
T Consensus 167 ~~----~~~~~~~~~~~~~~----~~~-----~~~----------~~~~~~~---~~~~---------~~~~~~~~~~~~ 211 (379)
T TIGR00881 167 CF----LLLRDSPQSCGLPP----AEE-----MPN----------EEPDGDA---EKKE---------EELTKKQIFLQY 211 (379)
T ss_pred Hh----eeeCCCccccccCc----ccc-----Ccc----------ccccccc---cccc---------ccccchHHHHHH
Confidence 00 00011000000000 000 000 0000000 0000 000111234578
Q ss_pred HhhcHHHHHHHHHHHhhhhchhheecchhHHHh-hcCCCccchhHHHHHHHHHHHHhhhhhhhhhhhhhhcccCchhHHH
Q 008482 346 AICTLEFWILSFAMACGMGSGLATVNNISQIGG-SLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFM 424 (564)
Q Consensus 346 ~l~t~~Fwll~~~~~~~~g~gl~~i~n~~~i~~-~~g~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~R~~~l 424 (564)
.++++.+|.+.+..++.......+.+....+.+ ..|.++.++....++..+.+.+|+++.|+++||..+++ |....
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~---~~~~~ 288 (379)
T TIGR00881 212 VLLNKVLWYISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGR---RGPLA 288 (379)
T ss_pred HHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCc---chHHH
Confidence 899999999988887776655555555666664 46888888888999999999999999999999875432 11111
Q ss_pred HHHHHHHHHHHHHHHh--c-CcchHHHHHHHHHhhhccccchhHHHHHHhhccCchhhhhhhHhhhhhhHHHhhhhhhhh
Q 008482 425 VITLAAMSIGHLIIAS--G-LPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVG 501 (564)
Q Consensus 425 ~~~~~l~~i~~ll~~~--~-~~~~l~~~~~l~G~~~G~~~~~~P~ivse~FG~k~fg~nyg~~~~a~~iG~~lf~~~l~g 501 (564)
........++...+.. . ......+...+.|+..++.....+.++.|.+..++-|+..|+......+|.. +++.+.|
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~-~~~~~~g 367 (379)
T TIGR00881 289 VFFMALIIVSLLVYWLNPAANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGI-LAGLPLG 367 (379)
T ss_pred HHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhh-hhhhhHH
Confidence 1222222222222211 1 1112344556667766666677778899999999999999999887778775 5777899
Q ss_pred hhhhccc
Q 008482 502 YIYDREA 508 (564)
Q Consensus 502 ~iyD~~~ 508 (564)
.+.|..+
T Consensus 368 ~l~~~~g 374 (379)
T TIGR00881 368 YLADGFG 374 (379)
T ss_pred HHHHhhc
Confidence 9999754
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.2e-18 Score=183.48 Aligned_cols=361 Identities=13% Similarity=0.047 Sum_probs=223.4
Q ss_pred hHHHHHHHHHHHHhcCcc-cccccccHHHHhhcCCCcchhhHHHHhhhhhccc-cccchhhhccccCCCCCCCccchhhh
Q 008482 12 RWVSTVASIWIQCTSGSL-YTFSIYSPALKTTQHYDQTTLDTVSVFKDIGANT-GTLSGVLYTYSTSDHSSHHPRQQRLT 89 (564)
Q Consensus 12 Rw~~l~a~~~i~l~~G~~-Y~fS~ys~~L~~~lg~sq~~~~~i~~a~~vg~~~-g~~~G~l~d~~~~~~~~~~~~~~~~~ 89 (564)
+|..+....+..++.+.. +..+...|.+++++|+|..|...+.....++..+ .++.|.+.||+|
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g-------------- 81 (426)
T PRK12307 16 QKNALFSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFG-------------- 81 (426)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------------
Confidence 344455555555555543 3446666788899999999999888888888765 567888888764
Q ss_pred cccCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHhhhcC-CCCcceeeeehhh
Q 008482 90 RLLGPWVVLLVGAIQCFAGYFLMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFP-TYSGTAVGIMKGF 168 (564)
Q Consensus 90 ~~~GP~~~~~iG~vl~~~Gy~~~~l~~~g~i~~~~~~~l~~~~~l~G~g~~~~~ta~l~t~~k~FP-~~RG~a~Gl~~a~ 168 (564)
+|.++.++.++..++..+.... .+++.+...-++.|.|.+..+++......++|| ++||++.|+...+
T Consensus 82 ----~r~~l~~~~~~~~~~~~~~~~~-------~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 150 (426)
T PRK12307 82 ----RKPLMMWSIVAYSVGTGLSGLA-------SGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSG 150 (426)
T ss_pred ----ChHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHH
Confidence 9999999999999999874432 246677777889999999999998888999998 5699999999999
Q ss_pred hhhhHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhhhhheeeeeccCCCCcccccchhHHHHHHHHHHHHHHHHHHhhhc
Q 008482 169 VGLSGAILIQVYQTFFNNKPTSYLLLLALLASIDPLLLMWFVRICNTNEGNEKKHLNSFSLIALIVAAYLMVIIILEHIF 248 (564)
Q Consensus 169 ~GLsa~i~s~i~~~~f~~~~~~~llfla~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~y~~~~~~~~~~~ 248 (564)
.+++..+...+... . .+..+.+ ..+.. .. ...
T Consensus 151 ~~lg~~~~~~l~~~------------------l--------~~~~~w~--------~~f~i----~~-~~~--------- 182 (426)
T PRK12307 151 FGIGNIIAAYFMPS------------------F--------AEAYGWR--------AAFFV----GL-LPV--------- 182 (426)
T ss_pred HhHHHHHHHHHHHH------------------H--------cccCCHH--------HHHHH----HH-HHH---------
Confidence 99888664322110 0 1110000 00000 00 000
Q ss_pred cCchHHHHHHHHHHHHHHhhhhhhhhhccCCCCCCCCcCccccCCCCCCCccchhhhccccCCCCCCCCCCCCCCCCCCC
Q 008482 249 ALPFLVRVLTLILLLLLLASPLYVAIRVQGSDSDRTSETSFCEEDELTDDPHEMHAEKMHVRQDPVGYHRLPSEPDVGTD 328 (564)
Q Consensus 249 ~~~~~~~~~~~~~~~~ll~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (564)
++.+. . .... +++ .+.. + ++. +++++. +++
T Consensus 183 ------------~~~~~--~----~~~~-p~~-~~~~-----~-------------~~~---~~~~~~-----~~~---- 212 (426)
T PRK12307 183 ------------LLVIY--I----RARA-PES-KEWE-----E-------------AKL---SGKGKH-----SQS---- 212 (426)
T ss_pred ------------HHHHH--H----HHHC-CCC-hHHH-----H-------------hhh---hccccc-----ccc----
Confidence 00000 0 0000 010 0000 0 000 000000 000
Q ss_pred CCCCCccCCCCCCcHHHHhhcHHHHHHHHHHHh---hhhchhheecchhHHHhhcCCCccchhHHHHHHHHHHHHhhhhh
Q 008482 329 TNDATTSLWGGDLDLLQAICTLEFWILSFAMAC---GMGSGLATVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGA 405 (564)
Q Consensus 329 ~~~~~~~~~~~~~t~~~~l~t~~Fwll~~~~~~---~~g~gl~~i~n~~~i~~~~g~~~~~aa~~Vsl~si~n~~GRl~~ 405 (564)
. ......+++++++++.+|.....+.+ ..+....+.+.++.+.++.|+++...+...++..+++.+|++++
T Consensus 213 ---~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~ 286 (426)
T PRK12307 213 ---A---WSVFSLSMKGLFNRAQFPLTLCVFIVLFSIFGANWPIFGLLPTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVW 286 (426)
T ss_pred ---c---hhhhhHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 00012356889999999865543332 22222234556777778888888778888899999999999999
Q ss_pred hhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHH-hcCcchHHHHHHHHHhhh--ccccchhHHHHHHhhccCchhhhhh
Q 008482 406 GYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIA-SGLPGALYAGSILVGVCY--GSQWSLMPTIASEIFGVLQMGTIFN 482 (564)
Q Consensus 406 G~lsD~l~~~~~~~R~~~l~~~~~l~~i~~ll~~-~~~~~~l~~~~~l~G~~~--G~~~~~~P~ivse~FG~k~fg~nyg 482 (564)
|+++||+++| ..+....++..+..+++. ........+..++.|+.+ .+..++.|.++.|.|+.++.|+..|
T Consensus 287 g~l~dr~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g 360 (426)
T PRK12307 287 GLCADRIGLK------KTFSIGLLMSFLFIFPLFRIPQDNYLLLGACLFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTG 360 (426)
T ss_pred HHHHHHhccH------HHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhcccHhHHHHHHHHHhCcHHHHhhhhh
Confidence 9999999643 223333333333333222 222222333444555443 3456788999999999999999999
Q ss_pred hHhhhhhhHHHhhhhhhhhhhhhccc
Q 008482 483 TITIANPVGSYIFSVRVVGYIYDREA 508 (564)
Q Consensus 483 ~~~~a~~iG~~lf~~~l~g~iyD~~~ 508 (564)
+......+|.. +++.+.|.+.|..+
T Consensus 361 ~~~~~~~~~~~-~gp~~~g~l~~~~g 385 (426)
T PRK12307 361 LIYNLAATSGT-FNSMAATWLGITMG 385 (426)
T ss_pred HHHHHHhHHHH-HHHHHHHHHHHccc
Confidence 98876666664 57778999998854
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.9e-18 Score=182.25 Aligned_cols=378 Identities=13% Similarity=0.104 Sum_probs=224.1
Q ss_pred hhchhHHHHHHHHHHHHhcCcc-cccccccHHHHhhcCCCcchhhHHHHhhhhhccc-cccchhhhccccCCCCCCCccc
Q 008482 8 RLNTRWVSTVASIWIQCTSGSL-YTFSIYSPALKTTQHYDQTTLDTVSVFKDIGANT-GTLSGVLYTYSTSDHSSHHPRQ 85 (564)
Q Consensus 8 ~~~~Rw~~l~a~~~i~l~~G~~-Y~fS~ys~~L~~~lg~sq~~~~~i~~a~~vg~~~-g~~~G~l~d~~~~~~~~~~~~~ 85 (564)
..+++|+.+.+..+..++.+.. +.++...+++++++|+|.+|+..+.....++..+ .++.|.+.||+|
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g---------- 75 (405)
T TIGR00891 6 LTRAQWNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYG---------- 75 (405)
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhc----------
Confidence 3467888877777777766654 6678888999999999999999887777777655 678888888765
Q ss_pred hhhhcccCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHhhhcC-CCCcceeee
Q 008482 86 QRLTRLLGPWVVLLVGAIQCFAGYFLMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFP-TYSGTAVGI 164 (564)
Q Consensus 86 ~~~~~~~GP~~~~~iG~vl~~~Gy~~~~l~~~g~i~~~~~~~l~~~~~l~G~g~~~~~ta~l~t~~k~FP-~~RG~a~Gl 164 (564)
+|.++.++.++..++.++... . ++++.++...++.|.+.+..+.+......+++| ++||.+.|+
T Consensus 76 --------~r~~~~~~~~~~~~~~~~~~~-----~--~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 140 (405)
T TIGR00891 76 --------RRLPMVTSIVLFSAGTLACGF-----A--PGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGL 140 (405)
T ss_pred --------cHHHHHHHHHHHHHHHHHHHH-----h--ccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHH
Confidence 999999999999998887432 2 357777788899999999999998888999998 579999999
Q ss_pred ehhhhhhhHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhhhhheeeeeccCCCCcccccchhHHHHHHHHHHHHHHHHHH
Q 008482 165 MKGFVGLSGAILIQVYQTFFNNKPTSYLLLLALLASIDPLLLMWFVRICNTNEGNEKKHLNSFSLIALIVAAYLMVIIIL 244 (564)
Q Consensus 165 ~~a~~GLsa~i~s~i~~~~f~~~~~~~llfla~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~y~~~~~~~ 244 (564)
...+.+++..+...+..... ...+.. ........++..+.
T Consensus 141 ~~~~~~~g~~~~~~l~~~l~--------------------------~~~~~~----------w~~~f~~~~~~~~~---- 180 (405)
T TIGR00891 141 LISGYAVGAVVAAQVYSLVV--------------------------PVWGDG----------WRALFFISILPIIF---- 180 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHH--------------------------HhcCcc----------HHHHHHHHHHHHHH----
Confidence 99888888866543322111 000000 00000000000000
Q ss_pred hhhccCchHHHHHHHHHHHHHHhhhhhhhhhccCCCCCCCCcCccccCCCCCCCccchhhhccccCCCCCCCCCCCCCCC
Q 008482 245 EHIFALPFLVRVLTLILLLLLLASPLYVAIRVQGSDSDRTSETSFCEEDELTDDPHEMHAEKMHVRQDPVGYHRLPSEPD 324 (564)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~ll~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (564)
.++. . ...+.+ +++++.+ + +++.. .+. .+ +...+ ++.
T Consensus 181 ------------------~~~~-~---~~~~~~-~~~~~~~---~-~~~~~----~~~--~~----~~~~~------~~~ 217 (405)
T TIGR00891 181 ------------------ALWL-R---KNIPEA-EDWKEKH---A-GKALV----RTM--VD----ILYGG------EHR 217 (405)
T ss_pred ------------------HHHH-H---HhCCCC-hhHHHHh---h-hhhhh----hhH--HH----HHhcc------chh
Confidence 0000 0 000000 0000000 0 00000 000 00 00000 000
Q ss_pred CCCCCCCCCccCCCCCCcHHHHhhcHHHH----HHHHHHHhhhhchhheecchhHHHh-hcCCCccchhHHHHHHHHHHH
Q 008482 325 VGTDTNDATTSLWGGDLDLLQAICTLEFW----ILSFAMACGMGSGLATVNNISQIGG-SLGYSSFETSSLISLWSIWNF 399 (564)
Q Consensus 325 ~~~~~~~~~~~~~~~~~t~~~~l~t~~Fw----ll~~~~~~~~g~gl~~i~n~~~i~~-~~g~~~~~aa~~Vsl~si~n~ 399 (564)
.++. .+..-...++ +....| .+...+.+.......+.+....+.+ +.|.++.+.+...++..+...
T Consensus 218 ----~~~~---~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ 288 (405)
T TIGR00891 218 ----IANI---VMTLAAAMVQ--SAGKRWPTFVYLVVLVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAI 288 (405)
T ss_pred ----hhhh---hhhhhHHhhh--hhhhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 0000 0000000111 111222 2222222222222233334455554 578888888888999999999
Q ss_pred HhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHH-HHHHHhcCc-chHHHHHHHHHhhhccccchhHHHHHHhhccCch
Q 008482 400 LGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIG-HLIIASGLP-GALYAGSILVGVCYGSQWSLMPTIASEIFGVLQM 477 (564)
Q Consensus 400 ~GRl~~G~lsD~l~~~~~~~R~~~l~~~~~l~~i~-~ll~~~~~~-~~l~~~~~l~G~~~G~~~~~~P~ivse~FG~k~f 477 (564)
+|+++.|+++||+++|+ .+.+...+..+. ..++..... ..+.+...+.|++.++.+.+.|..+.|.+..++-
T Consensus 289 ~g~~~~g~l~dr~g~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (405)
T TIGR00891 289 VGGCVFGFLGDWLGRRK------AYVCSLLAGQLLIIPVFAIGANVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQR 362 (405)
T ss_pred HHHHHHHHHHHHhCchh------hhHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHccchhhHHHHHhhhCCcchh
Confidence 99999999999996543 222222222222 112222222 2244444677888888999999999999999999
Q ss_pred hhhhhhHhhhhhhHHHhhhhhhhhhhhhcccC
Q 008482 478 GTIFNTITIANPVGSYIFSVRVVGYIYDREAS 509 (564)
Q Consensus 478 g~nyg~~~~a~~iG~~lf~~~l~g~iyD~~~~ 509 (564)
|+..|+......+|.. +++.++|.++|+.++
T Consensus 363 ~~~~g~~~~~~~~g~~-~g~~~~g~l~~~~g~ 393 (405)
T TIGR00891 363 AAGLGFTYQLGNLGGA-LAPIIGALLAQRLDE 393 (405)
T ss_pred HHHhhHHHHHHHHHHH-HHHHHHHHHHHhccc
Confidence 9999998776677774 577789999999886
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.6e-17 Score=176.19 Aligned_cols=380 Identities=10% Similarity=0.055 Sum_probs=235.8
Q ss_pred chhHHHHHHHHHHHHhcCcccccccccHHHHhhcCCCcchhhHHHHhhhhhccc-cccchhhhccccCCCCCCCccchhh
Q 008482 10 NTRWVSTVASIWIQCTSGSLYTFSIYSPALKTTQHYDQTTLDTVSVFKDIGANT-GTLSGVLYTYSTSDHSSHHPRQQRL 88 (564)
Q Consensus 10 ~~Rw~~l~a~~~i~l~~G~~Y~fS~ys~~L~~~lg~sq~~~~~i~~a~~vg~~~-g~~~G~l~d~~~~~~~~~~~~~~~~ 88 (564)
++.+...++....+...+..|. |-+++.+++|+|.+|+..+.+...++..+ .++.|.+.||+|
T Consensus 13 ~~~~~~~l~~~~~~~~~~~~~~---~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g------------- 76 (402)
T TIGR00897 13 LNLLWGYIGVVVFMTGDGLEQG---WLSPFLKALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIG------------- 76 (402)
T ss_pred chhhHHHHHHHHHHHhhhhHHH---hHHHHHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcC-------------
Confidence 4455666666666777676554 33556678999999999887777777655 678888888765
Q ss_pred hcccCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHhhhcC-CCCcceeeeehh
Q 008482 89 TRLLGPWVVLLVGAIQCFAGYFLMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFP-TYSGTAVGIMKG 167 (564)
Q Consensus 89 ~~~~GP~~~~~iG~vl~~~Gy~~~~l~~~g~i~~~~~~~l~~~~~l~G~g~~~~~ta~l~t~~k~FP-~~RG~a~Gl~~a 167 (564)
+|.++.++.++..++..+.-. .+... .+++.+.....+.|.|.+....+......+++| ++||++.|+..+
T Consensus 77 -----~k~~l~~~~~~~~~~~~~~~~--~~~~~-~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~ 148 (402)
T TIGR00897 77 -----PLKTMMIGLLLWCVGHAAFIV--FGLGH-ANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWA 148 (402)
T ss_pred -----cHHHHHHHHHHHHHHHHHHHH--HhccC-ccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 999999999999888665311 12211 245666666777788877766666666778875 789999999988
Q ss_pred hhhhhHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhhhhheeeeeccCCCCcccccchhHHHHHHHHHHHHHHHHHHhhh
Q 008482 168 FVGLSGAILIQVYQTFFNNKPTSYLLLLALLASIDPLLLMWFVRICNTNEGNEKKHLNSFSLIALIVAAYLMVIIILEHI 247 (564)
Q Consensus 168 ~~GLsa~i~s~i~~~~f~~~~~~~llfla~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~y~~~~~~~~~~ 247 (564)
..+++..++. |.+.. .++...+.. .. ...... +....
T Consensus 149 ~~~~g~~~~g---------------------~~~~~----~l~~~~g~~-----~~----~~~~~~---~~~~~------ 185 (402)
T TIGR00897 149 VYSIGIGVFG---------------------SYYSS----YAIPAFGEM-----NT----LWSALA---FVLTG------ 185 (402)
T ss_pred HHHHHHHHHH---------------------HHHHH----hcccccchH-----HH----HHHHHH---HHHHH------
Confidence 8887754332 22211 111111111 00 000000 00000
Q ss_pred ccCchHHHHHHHHHHHHHHhhhhhhhhhccCCCCCCCCcCccccCCCCCCCccchhhhccccCCCCCCCCCCCCCCCCCC
Q 008482 248 FALPFLVRVLTLILLLLLLASPLYVAIRVQGSDSDRTSETSFCEEDELTDDPHEMHAEKMHVRQDPVGYHRLPSEPDVGT 327 (564)
Q Consensus 248 ~~~~~~~~~~~~~~~~~ll~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (564)
.. + ... ..+.+++ ++ ++ +++ ++.
T Consensus 186 --------------~~--~-~~~--~~~~~~~----~~-------------~~-------------~~~-----~~~--- 208 (402)
T TIGR00897 186 --------------GV--I-ALF--SNKDIFT----PQ-------------HM-------------QTR-----EKF--- 208 (402)
T ss_pred --------------HH--H-HHh--ccCCCCC----cc-------------cc-------------cCC-----cch---
Confidence 00 0 000 0000000 00 00 000 000
Q ss_pred CCCCCCccCCCCCCcHHHHhhcHHHHHHHHHHHhhhhchhheecchhHHHhhcCCCccchhHHHHHHHHHHHHhhhhhhh
Q 008482 328 DTNDATTSLWGGDLDLLQAICTLEFWILSFAMACGMGSGLATVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGY 407 (564)
Q Consensus 328 ~~~~~~~~~~~~~~t~~~~l~t~~Fwll~~~~~~~~g~gl~~i~n~~~i~~~~g~~~~~aa~~Vsl~si~n~~GRl~~G~ 407 (564)
+ +.....++.++++.+|.+.+..++............+.+.++.|+++.++....++..+++.+|++..|+
T Consensus 209 --------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~ 279 (402)
T TIGR00897 209 --------S-ELGKAATILFTNPNVLLGGMVRIINTIGLFGFAVFLPMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGI 279 (402)
T ss_pred --------h-hHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0011346789999999988877776555555566677777888998888888888999999999999999
Q ss_pred hhhhhhhcccCchhHHHHHHHHHHHH---HHHHHHh---cCcchHHHHHHHHHhhhccccchhHHHHHHhhccCchhhhh
Q 008482 408 VSDYFLHVKEWARPLFMVITLAAMSI---GHLIIAS---GLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIF 481 (564)
Q Consensus 408 lsD~l~~~~~~~R~~~l~~~~~l~~i---~~ll~~~---~~~~~l~~~~~l~G~~~G~~~~~~P~ivse~FG~k~fg~ny 481 (564)
++||+++|+. ......+...+ ...+... +....+++..++.|++.++... ...+++|. .+++.|+.+
T Consensus 280 l~dr~~~~~~-----~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~-~~~~~g~~~ 352 (402)
T TIGR00897 280 VGDKLGWMNT-----VRWFGGVGCGIFTLALYYIPQHFGHSFAVALIIAIALGIFLAGYVP-LAAVFPTL-APKHKGAAM 352 (402)
T ss_pred HHHhhcchhH-----HHHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHH-HHHHHHhh-CcchhHHHH
Confidence 9999964321 11111222222 2111111 1122345567788888887644 44566776 467999999
Q ss_pred hhHhhhhhhHHHhhhhhhhhhhhhcccCCCCccccCCcccHHHHHHHHHHHHHHHHHHHHH
Q 008482 482 NTITIANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSFFIMGSATLCGSLAAFGL 542 (564)
Q Consensus 482 g~~~~a~~iG~~lf~~~l~g~iyD~~~~~~~~~C~G~~Cy~~af~i~~~l~v~a~vl~~~l 542 (564)
|+...+..+|.. +++.+.|.++|..+ +...|.+.+++.+++.++..++
T Consensus 353 g~~~~~~~lg~~-~gp~i~g~l~~~~g------------~~~~~~~~a~~~~i~~~~~~~~ 400 (402)
T TIGR00897 353 SVLNLSAGLSAF-LAPAIAVLFIGFFG------------AIGVVWIFAALYVVSAFLTAFI 400 (402)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHhhcc------------hHHHHHHHHHHHHHHHHHHHHh
Confidence 999988888885 68888999999876 5788888888887777666553
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.79 E-value=7.4e-18 Score=176.64 Aligned_cols=334 Identities=12% Similarity=0.065 Sum_probs=217.2
Q ss_pred cccccccHHHHhhcCCCcchhhHHHHhhhhhccc-cccchhhhccccCCCCCCCccchhhhcccCcHHHHHHHHHHHHHH
Q 008482 30 YTFSIYSPALKTTQHYDQTTLDTVSVFKDIGANT-GTLSGVLYTYSTSDHSSHHPRQQRLTRLLGPWVVLLVGAIQCFAG 108 (564)
Q Consensus 30 Y~fS~ys~~L~~~lg~sq~~~~~i~~a~~vg~~~-g~~~G~l~d~~~~~~~~~~~~~~~~~~~~GP~~~~~iG~vl~~~G 108 (564)
.+++..-|++++++|+|.+|...+.....++..+ +++.|.+.||+| +|.++.+|.++..+|
T Consensus 17 ~~~~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g------------------~r~~~~~~~~~~~~~ 78 (355)
T TIGR00896 17 TSVGPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFG------------------EERSVAAGLLLIAAG 78 (355)
T ss_pred ccCcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhC------------------chHHHHHHHHHHHHH
Confidence 4677888999999999999999888888887765 678888888765 999999999888888
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHhhhcCCCCcceeeeehhhhhhhHHHHHHHHHhhcCCCc
Q 008482 109 YFLMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFPTYSGTAVGIMKGFVGLSGAILIQVYQTFFNNKP 188 (564)
Q Consensus 109 y~~~~l~~~g~i~~~~~~~l~~~~~l~G~g~~~~~ta~l~t~~k~FP~~RG~a~Gl~~a~~GLsa~i~s~i~~~~f~~~~ 188 (564)
.... .. ++.+.+....++.|+|.+...++......++||++||++.|+.....+++..+...+..
T Consensus 79 ~~~~------~~--~~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~------- 143 (355)
T TIGR00896 79 ILIR------SA--PGTALLFAGTALIGVGIAIINVLLPSLIKRDFPQRVGLMTGLYSMALMGGAALAAAATV------- 143 (355)
T ss_pred HHHH------Hh--ccHHHHHHHHHHHHHHHHHHhccchHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHHHH-------
Confidence 7653 11 23555566777888888887777666778899999999999988888888766432211
Q ss_pred hhHHHHHHHHHHHHhhhhheeeeeccCCCCcccccchhHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHhh
Q 008482 189 TSYLLLLALLASIDPLLLMWFVRICNTNEGNEKKHLNSFSLIALIVAAYLMVIIILEHIFALPFLVRVLTLILLLLLLAS 268 (564)
Q Consensus 189 ~~~llfla~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 268 (564)
+. .+..... .. ..+.. .++..++ ..+...
T Consensus 144 ----------~l---------~~~~~~~---w~---~~f~~----~~~~~~~----------------------~~~~~~ 172 (355)
T TIGR00896 144 ----------PL---------AQHSGGH---WQ---QALAW----WALPALL----------------------ALLAWI 172 (355)
T ss_pred ----------HH---------HHhhhhh---HH---HHHHH----HHHHHHH----------------------HHHHHh
Confidence 00 0000000 00 00100 0000000 000000
Q ss_pred hhhhhhhccCCCCCCCCcCccccCCCCCCCccchhhhccccCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCcHHHHhh
Q 008482 269 PLYVAIRVQGSDSDRTSETSFCEEDELTDDPHEMHAEKMHVRQDPVGYHRLPSEPDVGTDTNDATTSLWGGDLDLLQAIC 348 (564)
Q Consensus 269 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~ 348 (564)
| .. + +++ +++ ++. .+.+.++++|
T Consensus 173 ~------~~-~--~~~-----------------------------~~~-----~~~--------------~~~~~~~~~~ 195 (355)
T TIGR00896 173 P------QV-R--RRV-----------------------------AAN-----QTT--------------TRLTPVRIWR 195 (355)
T ss_pred h------hh-c--ccc-----------------------------CCC-----CCC--------------CCCCCchhhc
Confidence 0 00 0 000 000 000 0113357789
Q ss_pred cHHHHHHHHHHHhhhhchhheecchhHHHhhcCCCccchhHHHHHHHHHHHHhhhhhhhhhhhhhhcccCchhHHHHHHH
Q 008482 349 TLEFWILSFAMACGMGSGLATVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITL 428 (564)
Q Consensus 349 t~~Fwll~~~~~~~~g~gl~~i~n~~~i~~~~g~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~R~~~l~~~~ 428 (564)
++.+|.+.+.+.+....-..+.+.++.+.++.|.++.+.+...++..+...+||+..|+++||+++| ...+....
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~-----~~~~~~~~ 270 (355)
T TIGR00896 196 SPLAWQVTVFFGLQSGLYYSLIGWLPAILISHGASAATAGSLLALMQLAQAASALLIPALARRVKDQ-----RGIVAVLA 270 (355)
T ss_pred CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccc-----hHHHHHHH
Confidence 9999988777766655555666677888888899888888999999999999999999999999532 23334444
Q ss_pred HHHHHHHHHHHhcCcchHHHHHHHHHhhhccccchhHHHHHHhhcc-CchhhhhhhHhhhhhhHHHhhhhhhhhhhhhcc
Q 008482 429 AAMSIGHLIIASGLPGALYAGSILVGVCYGSQWSLMPTIASEIFGV-LQMGTIFNTITIANPVGSYIFSVRVVGYIYDRE 507 (564)
Q Consensus 429 ~l~~i~~ll~~~~~~~~l~~~~~l~G~~~G~~~~~~P~ivse~FG~-k~fg~nyg~~~~a~~iG~~lf~~~l~g~iyD~~ 507 (564)
.+.+++.+.+.........+..++.|+++|..+.+..+.+.+.+.. ++.|..+|+......++.. +++.+.|.++|..
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~gp~~~G~l~~~~ 349 (355)
T TIGR00896 271 VLQLVGLCGLLFAPMHGLWAWALVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAA-LGPLFVGVLHDIS 349 (355)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHh
Confidence 4444444433322212233356788999999998887777766654 5568888877655555543 4667899999998
Q ss_pred cCC
Q 008482 508 ASG 510 (564)
Q Consensus 508 ~~~ 510 (564)
+++
T Consensus 350 g~~ 352 (355)
T TIGR00896 350 GNW 352 (355)
T ss_pred ccc
Confidence 874
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.1e-17 Score=178.31 Aligned_cols=376 Identities=14% Similarity=0.126 Sum_probs=229.8
Q ss_pred cccccccccHHHHh-hcCCCcchhhHHHHhhhhhccc-cccchhhhccccCCCCCCCccchhhhcccCcHHHHHHHHHHH
Q 008482 28 SLYTFSIYSPALKT-TQHYDQTTLDTVSVFKDIGANT-GTLSGVLYTYSTSDHSSHHPRQQRLTRLLGPWVVLLVGAIQC 105 (564)
Q Consensus 28 ~~Y~fS~ys~~L~~-~lg~sq~~~~~i~~a~~vg~~~-g~~~G~l~d~~~~~~~~~~~~~~~~~~~~GP~~~~~iG~vl~ 105 (564)
.-+.||.-.+++++ ++|+|.+|+..+.....++..+ -++.|.+.||+| ||.+..++.++.
T Consensus 49 ~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G------------------~R~v~~~~~ll~ 110 (462)
T PRK15034 49 VWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFG------------------GRRWTVFSTAIL 110 (462)
T ss_pred HHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC------------------ChHHHHHHHHHH
Confidence 44666666677766 7999999999776655555545 478888888765 999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHhhhcCC-CCcceeeeehhhhhhhHHHHHHHHHhhc
Q 008482 106 FAGYFLMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFPT-YSGTAVGIMKGFVGLSGAILIQVYQTFF 184 (564)
Q Consensus 106 ~~Gy~~~~l~~~g~i~~~~~~~l~~~~~l~G~g~~~~~ta~l~t~~k~FP~-~RG~a~Gl~~a~~GLsa~i~s~i~~~~f 184 (564)
.++.+++..+..... ++++.++...++.|.+ +..+.+++....+|||+ +||++.|+..+.-.+++.+...+
T Consensus 111 ~i~~~~~~~a~~~~~--~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l----- 182 (462)
T PRK15034 111 IIPCVWLGIAVQNPN--TPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLV----- 182 (462)
T ss_pred HHHHHHHHHHHcccC--CCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHH-----
Confidence 998887655444433 4688888889999998 66888999999999995 69999999875555655544321
Q ss_pred CCCchhHHHHHHHHHHHHhh--hhheeeeeccCCCCcccccchhHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHH
Q 008482 185 NNKPTSYLLLLALLASIDPL--LLMWFVRICNTNEGNEKKHLNSFSLIALIVAAYLMVIIILEHIFALPFLVRVLTLILL 262 (564)
Q Consensus 185 ~~~~~~~llfla~~p~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (564)
.|.++.+ ...+--+......+ .. ....-...+|.... ++
T Consensus 183 -------------~p~~i~~~l~~~~G~~~~~~~~g---~~----~~~~~~~~~~~~~~-------------------iv 223 (462)
T PRK15034 183 -------------APLVIFVPVFAFLGVNGVPQADG---SV----MSLANAAWIWVPLL-------------------AI 223 (462)
T ss_pred -------------HHHHHHHHHHHHhcccccccccc---ch----HHHHHHHHHHHHHH-------------------HH
Confidence 2332211 11110000000000 00 00000111111111 00
Q ss_pred HHHHhhhhhhhhhccCCCCCCCCcCccccCCCCCCCccchhhhccccCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCc
Q 008482 263 LLLLASPLYVAIRVQGSDSDRTSETSFCEEDELTDDPHEMHAEKMHVRQDPVGYHRLPSEPDVGTDTNDATTSLWGGDLD 342 (564)
Q Consensus 263 ~~ll~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t 342 (564)
..++.. + . . ++ + |+ ++ . .-..
T Consensus 224 ~~i~~~-~---~-~--~~------------------~-------------~~-------~~------------~--~~~~ 244 (462)
T PRK15034 224 ATIAAW-S---G-M--ND------------------I-------------AS-------SR------------A--SIAD 244 (462)
T ss_pred HHHHHH-H---h-C--CC------------------c-------------cc-------cc------------c--CHHH
Confidence 000000 0 0 0 00 0 00 00 0 0013
Q ss_pred HHHHhhcHHHHHHHHHHHhhhhchhheecchhHHHhhcCCCccchhHHHHHHHHHHHHhhhhhhhhhhhhhhcccCchhH
Q 008482 343 LLQAICTLEFWILSFAMACGMGSGLATVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPL 422 (564)
Q Consensus 343 ~~~~l~t~~Fwll~~~~~~~~g~gl~~i~n~~~i~~~~g~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~R~~ 422 (564)
.++.+|+++-|++.+.+++.-|.-..+.+-++...++ .++.........+..+...++|.+.|+++||++++ .
T Consensus 245 ~~~vlk~~~~Wllslly~~tFG~fvg~s~~lp~~~~~-~~~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~------~ 317 (462)
T PRK15034 245 QLPVLQRLHLWLLSLLYLATFGSFIGFSAGFAMLAKT-QFPDVNILRLAFFGPFIGAIARSVGGAISDKFGGV------R 317 (462)
T ss_pred HHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH-HcChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCch------H
Confidence 4678999999999999998877666665566666665 34433333335566788999999999999999643 2
Q ss_pred HHHHHHHHHHHHHHH--HHhcC----cchHHH-----HHHHHHhhhccccchhHHHHHH--h---------------hcc
Q 008482 423 FMVITLAAMSIGHLI--IASGL----PGALYA-----GSILVGVCYGSQWSLMPTIASE--I---------------FGV 474 (564)
Q Consensus 423 ~l~~~~~l~~i~~ll--~~~~~----~~~l~~-----~~~l~G~~~G~~~~~~P~ivse--~---------------FG~ 474 (564)
.+...++++.+..+. +.... +..++. ..+..|++.|+.|-+.|.+..+ . -..
T Consensus 318 vl~~~~i~~~i~~~~~~l~lp~~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~ 397 (462)
T PRK15034 318 VTLINFIFMAIFSALLFLTLPGTGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAQREAV 397 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccchhHHhhHHH
Confidence 233333333332211 11111 111222 2244477888888666666542 1 111
Q ss_pred CchhhhhhhHhhhhhhHHHhhhhhhhhhhhhcccCCCCccccCCcccHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008482 475 LQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSFFIMGSATLCGSLAAFGLFLRT 546 (564)
Q Consensus 475 k~fg~nyg~~~~a~~iG~~lf~~~l~g~iyD~~~~~~~~~C~G~~Cy~~af~i~~~l~v~a~vl~~~l~~r~ 546 (564)
|+-|..=|++....++|+++ -|+++|..+|.+++ |..+|++..+..+++++++++...|+
T Consensus 398 ~~~g~v~G~v~a~G~~Ggf~-~p~~~g~~~~~~g~-----------~~~~~~~~~~~~~~~~~~~w~~y~r~ 457 (462)
T PRK15034 398 TETAAALGFISAIGAVGGFF-IPQAFGMSLNMTGS-----------PVGAMKVFLIFYIVCVLLTWLVYGRR 457 (462)
T ss_pred HHHHHHHHHHHHHHHcccch-hhHHHHHHHHHcCC-----------cHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 36777778888889998875 45689999999988 89999999999999998888766554
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.4e-17 Score=172.64 Aligned_cols=372 Identities=14% Similarity=0.119 Sum_probs=223.1
Q ss_pred hhchhHHHHHHHHHHHHhcCcccccccccHHHHhhcCCCcchhhHHHHhhhhhccc-cccchhhhccccCCCCCCCccch
Q 008482 8 RLNTRWVSTVASIWIQCTSGSLYTFSIYSPALKTTQHYDQTTLDTVSVFKDIGANT-GTLSGVLYTYSTSDHSSHHPRQQ 86 (564)
Q Consensus 8 ~~~~Rw~~l~a~~~i~l~~G~~Y~fS~ys~~L~~~lg~sq~~~~~i~~a~~vg~~~-g~~~G~l~d~~~~~~~~~~~~~~ 86 (564)
+.+++...++.+..+... |.....++....+++++|+|.+|+..+..+..++..+ .++.|.+.||+|
T Consensus 12 ~~~~~~~~l~~~~~~~~~-~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g----------- 79 (399)
T PRK05122 12 RLTLRIVSIVMFTFISYL-TIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLG----------- 79 (399)
T ss_pred cccHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccC-----------
Confidence 334444444444443333 2344556677778999999999999887777777765 678888888765
Q ss_pred hhhcccCcHHHHHHHHHHHHHHHHHHHHHH-hcCCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHhhhcC-CCCcceeee
Q 008482 87 RLTRLLGPWVVLLVGAIQCFAGYFLMWASV-VGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFP-TYSGTAVGI 164 (564)
Q Consensus 87 ~~~~~~GP~~~~~iG~vl~~~Gy~~~~l~~-~g~i~~~~~~~l~~~~~l~G~g~~~~~ta~l~t~~k~FP-~~RG~a~Gl 164 (564)
+|.++.++.++..++........ .+.....+++.++...++.|.|.+..+.++.....+++| ++||++.|+
T Consensus 80 -------~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 152 (399)
T PRK05122 80 -------PKKAVVFGLCGCALSGLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISW 152 (399)
T ss_pred -------CcchHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhh
Confidence 99999999998888777654432 121111235566777889999999998888777788886 689999988
Q ss_pred ehhhhhhhHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhhhhheeeeeccCCCCcccccchhHHHHHHHHHHHHHHHHHH
Q 008482 165 MKGFVGLSGAILIQVYQTFFNNKPTSYLLLLALLASIDPLLLMWFVRICNTNEGNEKKHLNSFSLIALIVAAYLMVIIIL 244 (564)
Q Consensus 165 ~~a~~GLsa~i~s~i~~~~f~~~~~~~llfla~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~y~~~~~~~ 244 (564)
......++..+- |.....+ ++..+. ....+...+..+
T Consensus 153 ~~~~~~~g~~~g----------------------~~l~~~l----~~~~g~------------~~~~~~~~~~~~----- 189 (399)
T PRK05122 153 NGIATYGALAIG----------------------APLGVLL----YHWGGL------------AGLGLLIMLLAL----- 189 (399)
T ss_pred hhhhhhHHHHHH----------------------HHHHHHH----HHcccH------------HHHHHHHHHHHH-----
Confidence 766655554332 2221111 111110 000000000000
Q ss_pred hhhccCchHHHHHHHHHHHHHHhhhhhhhhhccCCCCCCCCcCccccCCCCCCCccchhhhccccCCCCCCCCCCCCCCC
Q 008482 245 EHIFALPFLVRVLTLILLLLLLASPLYVAIRVQGSDSDRTSETSFCEEDELTDDPHEMHAEKMHVRQDPVGYHRLPSEPD 324 (564)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~ll~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (564)
+.++. .+..+++ ++ + ++
T Consensus 190 ------------------~~~~~------~~~~~~~------------------~~-------------~-------~~- 206 (399)
T PRK05122 190 ------------------LGLLL------ARPRPAV------------------PP-------------V-------KG- 206 (399)
T ss_pred ------------------HHHHH------HhcCCCC------------------CC-------------C-------Cc-
Confidence 00000 0000000 00 0 00
Q ss_pred CCCCCCCCCccCCCCCCcHHHHhhcHHHHHHHHHHHhhhhchhheecchhHHHhhcCCCccchhHHHHHHHHHHHHhhhh
Q 008482 325 VGTDTNDATTSLWGGDLDLLQAICTLEFWILSFAMACGMGSGLATVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFG 404 (564)
Q Consensus 325 ~~~~~~~~~~~~~~~~~t~~~~l~t~~Fwll~~~~~~~~g~gl~~i~n~~~i~~~~g~~~~~aa~~Vsl~si~n~~GRl~ 404 (564)
+..+.++.++ ++|.....+.+....-.++...+..+.++.|.+ ......+++.++..+||+.
T Consensus 207 --------------~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 268 (399)
T PRK05122 207 --------------ERLPFRRVLG--RVWPYGMGLALASIGFGTIATFITLYYAARGWD--GAALALTLFGVAFVGARLL 268 (399)
T ss_pred --------------cchhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc--cchHHHHHHHHHHHHHHHH
Confidence 0011233333 234332222222111112223344455566653 4466778899999999999
Q ss_pred hhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHh-cCcchHHHHHHHHHhhhccccchhHHHHHHhhccCchhhhhhh
Q 008482 405 AGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIAS-GLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNT 483 (564)
Q Consensus 405 ~G~lsD~l~~~~~~~R~~~l~~~~~l~~i~~ll~~~-~~~~~l~~~~~l~G~~~G~~~~~~P~ivse~FG~k~fg~nyg~ 483 (564)
.|++.||+++| ..+.....+.+++.+++.. ..+..+++..++.|+++|..+......+.|.+..++.|+.+|+
T Consensus 269 ~g~l~~r~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~ 342 (399)
T PRK05122 269 FGNLINRLGGL------RVAIVSLLVEILGLLLLWLAPSPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGA 342 (399)
T ss_pred HHHHHHHhccH------HHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 99999998532 2344444455555444332 2233455567889999998887777888899999999999999
Q ss_pred HhhhhhhHHHhhhhhhhhhhhhcccCCCCccccCCcccHHHHHHHHHHHHHHHHHHHH
Q 008482 484 ITIANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSFFIMGSATLCGSLAAFG 541 (564)
Q Consensus 484 ~~~a~~iG~~lf~~~l~g~iyD~~~~~~~~~C~G~~Cy~~af~i~~~l~v~a~vl~~~ 541 (564)
......+|.. +++.+.|.+.|..+ |+.+|.+..+++++++++...
T Consensus 343 ~~~~~~~g~~-~~~~~~g~l~~~~g------------~~~~~~~~~~~~~~~~~~~~~ 387 (399)
T PRK05122 343 YSVFLDLSLG-ITGPLAGLVASWFG------------YPSIFLAAALAALLGLALTWL 387 (399)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHcC------------HHHHHHHHHHHHHHHHHHHHH
Confidence 8877777764 35557899998754 799999988888887755544
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.9e-17 Score=174.36 Aligned_cols=394 Identities=11% Similarity=0.078 Sum_probs=239.8
Q ss_pred ChHhhhhhhchhHHHHHHHHHHHHhcCcccccccccHHHHhhcCCCcchhhHHHHhhhhhcc-ccccchhhhccccCCCC
Q 008482 1 MERLKQLRLNTRWVSTVASIWIQCTSGSLYTFSIYSPALKTTQHYDQTTLDTVSVFKDIGAN-TGTLSGVLYTYSTSDHS 79 (564)
Q Consensus 1 ~~~~~~~~~~~Rw~~l~a~~~i~l~~G~~Y~fS~ys~~L~~~lg~sq~~~~~i~~a~~vg~~-~g~~~G~l~d~~~~~~~ 79 (564)
|.||+|...-.+|..+++.+++.+..+.. +++.+..+++++|+|..++..+.....+... .+++.|.+.||+|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g---- 74 (400)
T PRK11646 1 MSRVSQARNLGKYFLLIDNMLVVLGFFVV--FPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFG---- 74 (400)
T ss_pred CCCCcccccccHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhC----
Confidence 45777777767788888888888876544 7778888999999999999876655555554 3677788888765
Q ss_pred CCCccchhhhcccCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHhhhcC-CCC
Q 008482 80 SHHPRQQRLTRLLGPWVVLLVGAIQCFAGYFLMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFP-TYS 158 (564)
Q Consensus 80 ~~~~~~~~~~~~~GP~~~~~iG~vl~~~Gy~~~~l~~~g~i~~~~~~~l~~~~~l~G~g~~~~~ta~l~t~~k~FP-~~R 158 (564)
+|.++.++.++..++..+.... +++|.++...++.|.+.+....+......+++| ++|
T Consensus 75 --------------~k~~l~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~ 133 (400)
T PRK11646 75 --------------AKPMIVTGMLMRAAGFATMAIA-------HEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQR 133 (400)
T ss_pred --------------chHHHHHHHHHHHHHHHHHHHh-------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 9999999999999998875432 246777777788888888777777777788996 689
Q ss_pred cceeeeehhhhhhhHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhhhhheeeeeccCCCCcccccchhHHHHHHHHHHHH
Q 008482 159 GTAVGIMKGFVGLSGAILIQVYQTFFNNKPTSYLLLLALLASIDPLLLMWFVRICNTNEGNEKKHLNSFSLIALIVAAYL 238 (564)
Q Consensus 159 G~a~Gl~~a~~GLsa~i~s~i~~~~f~~~~~~~llfla~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~y~ 238 (564)
|.+.|+......++..+-. .+.+.+. ..+.+ ..|.. .++..
T Consensus 134 ~~a~~~~~~~~~~g~~ig~----------------------~l~g~l~-----~~g~~--------~~f~~----~~~~~ 174 (400)
T PRK11646 134 GRFFSLLMMQDSAGAVIGA----------------------LLGSWLL-----QYDFR--------LVCAT----GAVLF 174 (400)
T ss_pred HHHHHHHHHHHHHHHHHHH----------------------HHHHHHH-----HhhHH--------HHHHH----HHHHH
Confidence 9999998888888876543 2222211 00100 00110 00000
Q ss_pred HHHHHHhhhccCchHHHHHHHHHHHHHHhhhhhhhhhccCCCCCCCCcCccccCCCCCCCccchhhhccccCCCCCCCCC
Q 008482 239 MVIIILEHIFALPFLVRVLTLILLLLLLASPLYVAIRVQGSDSDRTSETSFCEEDELTDDPHEMHAEKMHVRQDPVGYHR 318 (564)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (564)
++ ..++. . . ..+ +. . + ++ +
T Consensus 175 ~~---------------------~~i~~-~-~----~~~-~~-~-~-------------~~--------------~---- 193 (400)
T PRK11646 175 VL---------------------AAAFN-A-W----LLP-AY-K-L-------------ST--------------V---- 193 (400)
T ss_pred HH---------------------HHHHH-H-H----hCC-cc-c-c-------------cc--------------c----
Confidence 00 00000 0 0 000 00 0 0 00 0
Q ss_pred CCCCCCCCCCCCCCCccCCCCCCcHHHHhhcHHHHHHHHHHHhhhhchhheecchhHHHhhcCCCccchhHHHHHHHHHH
Q 008482 319 LPSEPDVGTDTNDATTSLWGGDLDLLQAICTLEFWILSFAMACGMGSGLATVNNISQIGGSLGYSSFETSSLISLWSIWN 398 (564)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~t~~Fwll~~~~~~~~g~gl~~i~n~~~i~~~~g~~~~~aa~~Vsl~si~n 398 (564)
.. + ...++++.++++.||.+.+.++........+...++...++.+.++.+.+...++.++..
T Consensus 194 ---~~------------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~l~~~~~~~~ 256 (400)
T PRK11646 194 ---RT------------P--VREGMTRVLRDKRFVTYVLTLTGYYMLAVQVMLMLPIMVNDIAGSPSAVKWMYAIEACLS 256 (400)
T ss_pred ---ch------------h--hHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHhhhhhHHhhcCCchHHHHHHHHHHHHH
Confidence 00 0 011457888999999766554443322222333455556776666666666666666655
Q ss_pred HHhhhhhhhhhhh-hhhcccCchhHHHHHHHHHHHHHHHHHHh-cCcchHHHHHHHHHhhhccccchhHHHHHHhhccCc
Q 008482 399 FLGRFGAGYVSDY-FLHVKEWARPLFMVITLAAMSIGHLIIAS-GLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQ 476 (564)
Q Consensus 399 ~~GRl~~G~lsD~-l~~~~~~~R~~~l~~~~~l~~i~~ll~~~-~~~~~l~~~~~l~G~~~G~~~~~~P~ivse~FG~k~ 476 (564)
..+....+...|+ ... |. .+...+.+.+++.+++.. +....+.+..++.|++++......++++.+....++
T Consensus 257 ~~~~~~~~~~~~~r~~~-----~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~ 330 (400)
T PRK11646 257 LTLLYPIARWSEKRFRL-----EH-RLMAGLLIMSLSMFPIGMVSNLQQLFTLICLFYIGSIIAEPARETLSASLADARA 330 (400)
T ss_pred HHHHHHHHHHHHHhcch-----hH-HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHccHHHHHHhcCCccc
Confidence 5444333444443 321 11 233344445555544432 222234445677888888888888999999999999
Q ss_pred hhhhhhhHhhhhhhHHHhhhhhhhhhhhhcccCCCCccccCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 008482 477 MGTIFNTITIANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSFFIMGSATLCGSLAAFGLFLRTKRFYNEVI 554 (564)
Q Consensus 477 fg~nyg~~~~a~~iG~~lf~~~l~g~iyD~~~~~~~~~C~G~~Cy~~af~i~~~l~v~a~vl~~~l~~r~~~~~~~~~ 554 (564)
.|+.+|+......+|.. +++.++|.++|..+++. =+..+|.+...+++++.+. +....|++|.-|++.
T Consensus 331 ~g~~~g~~~~~~~~g~~-ig~~l~G~l~~~~~~~~--------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 398 (400)
T PRK11646 331 RGSYMGFSRLGLALGGA-IGYIGGGWLFDLGKALN--------QPELPWMMLGIIGLITLLA-LYWQFSQKRIARRML 398 (400)
T ss_pred chhhhhHHHHHHHHHHH-hcccchHHHHHHHhhcC--------CcchHHHHHHHHHHHHHHH-HHHHHhhchHHHhhh
Confidence 99999998888777774 67888999999865420 0356666666666665533 333344444444443
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.78 E-value=1e-17 Score=175.80 Aligned_cols=377 Identities=15% Similarity=0.070 Sum_probs=223.9
Q ss_pred chhHHHHHHHHHHHHhcCc-ccccccccHHHHhhcCCCcchhhHHHHhhhhhccc-cccchhhhccccCCCCCCCccchh
Q 008482 10 NTRWVSTVASIWIQCTSGS-LYTFSIYSPALKTTQHYDQTTLDTVSVFKDIGANT-GTLSGVLYTYSTSDHSSHHPRQQR 87 (564)
Q Consensus 10 ~~Rw~~l~a~~~i~l~~G~-~Y~fS~ys~~L~~~lg~sq~~~~~i~~a~~vg~~~-g~~~G~l~d~~~~~~~~~~~~~~~ 87 (564)
+++|..++.+.+..++.|. .+.++.+.|.+.+++|+|..|...+.....++..+ .++.|.+.||+|
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g------------ 80 (398)
T TIGR00895 13 RYQWRAIILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIG------------ 80 (398)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhh------------
Confidence 4567777777777766654 46788899999999999999998877777777655 567787778764
Q ss_pred hhcccCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHhhhcC-CCCcceeeeeh
Q 008482 88 LTRLLGPWVVLLVGAIQCFAGYFLMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFP-TYSGTAVGIMK 166 (564)
Q Consensus 88 ~~~~~GP~~~~~iG~vl~~~Gy~~~~l~~~g~i~~~~~~~l~~~~~l~G~g~~~~~ta~l~t~~k~FP-~~RG~a~Gl~~ 166 (564)
+|.++.++.++..+++.++... .+++.+....++.|++.+..+.+......+++| ++||.+.|+..
T Consensus 81 ------~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 147 (398)
T TIGR00895 81 ------RKRVLLWSILLFSVFTLLCALA-------TNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMF 147 (398)
T ss_pred ------hHHHHHHHHHHHHHHHHHHHHc-------cchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHh
Confidence 9999999999999988875432 246666777888899999999998899999998 57999999988
Q ss_pred hhhhhhHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhhhhheeeeeccCCCCcccccchhHHHHHHHHHHHHHHHHHHhh
Q 008482 167 GFVGLSGAILIQVYQTFFNNKPTSYLLLLALLASIDPLLLMWFVRICNTNEGNEKKHLNSFSLIALIVAAYLMVIIILEH 246 (564)
Q Consensus 167 a~~GLsa~i~s~i~~~~f~~~~~~~llfla~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~y~~~~~~~~~ 246 (564)
....+++.+-..+.... .+..+.+ ..+ .... .+..+..
T Consensus 148 ~~~~~g~~~~~~~~~~l--------------------------~~~~g~~-----~~~---~~~~---~~~~~~~----- 185 (398)
T TIGR00895 148 CGYPIGAAVGGFLAGWL--------------------------IPVFGWR-----SLF---YVGG---IAPLLLL----- 185 (398)
T ss_pred hHHHHHHHHHHHHHHHH--------------------------hhcccce-----eeh---hhhh---hHHHHHH-----
Confidence 88888876654222111 1111111 111 1000 0000000
Q ss_pred hccCchHHHHHHHHHHHHHHhhhhhhhhhccCCCCCCCCcCccccCCCCCCCccchhhhccccCCCCCCCCCCCCCCCCC
Q 008482 247 IFALPFLVRVLTLILLLLLLASPLYVAIRVQGSDSDRTSETSFCEEDELTDDPHEMHAEKMHVRQDPVGYHRLPSEPDVG 326 (564)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~ll~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (564)
.+..... +.+++ ....+ .+++ ..+..++..+...+++++ ..++
T Consensus 186 ---------------~~~~~~~------~~~~~-~~~~~--~~~~-------~~~~~~~~~~~~~~~~~~----~~~~-- 228 (398)
T TIGR00895 186 ---------------LLLMRFL------PESID-FLVSK--RPET-------VRRIVNAIAPQMQAEAQS----ALPE-- 228 (398)
T ss_pred ---------------HHHHHhC------CCCCh-HHHhc--CHHH-------HHHHHHHHHHhccccccc----cccc--
Confidence 0000000 00000 00000 0000 000000000000000000 0000
Q ss_pred CCCCCCCccCCCCCCcHHH-H---hhcHHHHHHHHHHHhhhhchhheecchhHHHhhcCCCccchhHHHHHHHHHHHHhh
Q 008482 327 TDTNDATTSLWGGDLDLLQ-A---ICTLEFWILSFAMACGMGSGLATVNNISQIGGSLGYSSFETSSLISLWSIWNFLGR 402 (564)
Q Consensus 327 ~~~~~~~~~~~~~~~t~~~-~---l~t~~Fwll~~~~~~~~g~gl~~i~n~~~i~~~~g~~~~~aa~~Vsl~si~n~~GR 402 (564)
+ +.+.+ ......+ . .+.+.+|.+++.+++.......+.+....+.++.|.++.+.+...++.++++.+|+
T Consensus 229 ---~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 302 (398)
T TIGR00895 229 ---Q-KATQG--TKRSVFKALFQGKTARITVLLWLLYFMLLVGVYFLTNWLPKLMVELGFSLSLAATGGALFNFGGVIGS 302 (398)
T ss_pred ---c-ccccc--hhhHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 0 00000 0111122 2 22345566666665544444344444555667788888888889999999999999
Q ss_pred hhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHH-hcCcchHHHHHHHHHhhhccccchhHHHHHHhhccCchhhhh
Q 008482 403 FGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIA-SGLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIF 481 (564)
Q Consensus 403 l~~G~lsD~l~~~~~~~R~~~l~~~~~l~~i~~ll~~-~~~~~~l~~~~~l~G~~~G~~~~~~P~ivse~FG~k~fg~ny 481 (564)
+++|+++||+++| ..+...........++.. ...+..+++..++.|+++|.......+++.|.+..++-|+.+
T Consensus 303 ~~~~~l~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~ 376 (398)
T TIGR00895 303 IIFGWLADRLGPR------VTALLLLLGAVFAVLVGSTLFSPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGV 376 (398)
T ss_pred HHHHHHHhhcchH------HHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 9999999999642 222222222222222222 223334667788999999999999999999999999999999
Q ss_pred hhHhhhhhhHHHhhhhhhhhhh
Q 008482 482 NTITIANPVGSYIFSVRVVGYI 503 (564)
Q Consensus 482 g~~~~a~~iG~~lf~~~l~g~i 503 (564)
|+......+|.. +++.+.|.+
T Consensus 377 g~~~~~~~~g~~-~g~~~~G~l 397 (398)
T TIGR00895 377 GWAIGIGRLGAI-IGPILAGYL 397 (398)
T ss_pred HHHHHHHHHHHH-HHHHhHHhc
Confidence 988876667764 566666654
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.6e-17 Score=175.86 Aligned_cols=389 Identities=15% Similarity=0.081 Sum_probs=216.2
Q ss_pred ChHhhhhhhchhHHHHHHHHHHHHhcCcccccccccHHHHhhcCCCcchhhHHHHhhhhhcc-ccccchhhhccccCCCC
Q 008482 1 MERLKQLRLNTRWVSTVASIWIQCTSGSLYTFSIYSPALKTTQHYDQTTLDTVSVFKDIGAN-TGTLSGVLYTYSTSDHS 79 (564)
Q Consensus 1 ~~~~~~~~~~~Rw~~l~a~~~i~l~~G~~Y~fS~ys~~L~~~lg~sq~~~~~i~~a~~vg~~-~g~~~G~l~d~~~~~~~ 79 (564)
|++|-..+.++-|...+.-.+..++.| ..++.++..+++++|+|+.|+..+.....++.. ..++.|.+.||+|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g---- 74 (420)
T PRK09528 1 MATMYYLKNPNYWIFSLFFFFFFFIWS--SWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLG---- 74 (420)
T ss_pred CccchhhcCcchHHHHHHHHHHHHHHH--HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----
Confidence 455666655666766666666665554 357888888999999999999977666666654 4778888888875
Q ss_pred CCCccchhhhcccCcHHHHHHHHHHHHHHHHHHHH-HHhcCCCCCCHHHHHHHHHHHhhhhhhhhHH---HHHHHhhhcC
Q 008482 80 SHHPRQQRLTRLLGPWVVLLVGAIQCFAGYFLMWA-SVVGLIPRPPVPVMCLFMLFAAHGMTFFNTA---DVVTSVRNFP 155 (564)
Q Consensus 80 ~~~~~~~~~~~~~GP~~~~~iG~vl~~~Gy~~~~l-~~~g~i~~~~~~~l~~~~~l~G~g~~~~~ta---~l~t~~k~FP 155 (564)
+|.++.++.....++...... ....... ...+.. ..+++...+....+ .+..-..+++
T Consensus 75 --------------~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (420)
T PRK09528 75 --------------LKKHLLWIISGLLVLFGPFFIYVFAPLLQ-YNILLG---AIVGGIYLGFGFLAGAGAIEAYIERVS 136 (420)
T ss_pred --------------chHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH---HHHHHHHhhhhhccchhhhhhHHHHHH
Confidence 898888876666655443211 1111110 011111 12222222222222 1222234567
Q ss_pred CCCcceeeeehhhhhhhHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhhhhheeeeeccCCCCcccccchhHHHHHHHHH
Q 008482 156 TYSGTAVGIMKGFVGLSGAILIQVYQTFFNNKPTSYLLLLALLASIDPLLLMWFVRICNTNEGNEKKHLNSFSLIALIVA 235 (564)
Q Consensus 156 ~~RG~a~Gl~~a~~GLsa~i~s~i~~~~f~~~~~~~llfla~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~ 235 (564)
++||++.|...+...++..+.+ .+...+. .. +.+ . .|... .+
T Consensus 137 ~~~g~~~g~~~~~~~~g~~i~~----------------------~~~g~l~----~~-~~~-----~---~f~~~---~~ 178 (420)
T PRK09528 137 RRSGFEYGRARMWGSLGWALCA----------------------FIAGILF----NI-NPQ-----I---NFWLG---SG 178 (420)
T ss_pred hhccccchhhHHhhhHHHHHHH----------------------HHHHHHH----hc-Cch-----H---hHHHH---HH
Confidence 7889999998888888876653 2222111 10 000 0 11110 00
Q ss_pred HHHHHHHHHhhhccCchHHHHHHHHHHHHHHhhhhhhhhhccCCCCCCCCcCccccCCCCCCCccchhhhccccCCCCCC
Q 008482 236 AYLMVIIILEHIFALPFLVRVLTLILLLLLLASPLYVAIRVQGSDSDRTSETSFCEEDELTDDPHEMHAEKMHVRQDPVG 315 (564)
Q Consensus 236 ~y~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (564)
...+ ........+.+++ ++.+ . + + +++
T Consensus 179 ~~~~---------------------------~~~~~~~~~~~~~--~~~~----------~-~-~------------~~~ 205 (420)
T PRK09528 179 SALI---------------------------LLVLLFFAKPDAP--STAK----------V-A-N------------ALG 205 (420)
T ss_pred HHHH---------------------------HHHHHhccccccc--chhh----------h-c-c------------chh
Confidence 0000 0000000011100 0000 0 0 0 000
Q ss_pred CCCCCCCCCCCCCCCCCCccCCCCCCcHHHHhhcHHHHHHHHHHHhhhhchhheecchhHHHhh----cCCCccchhHHH
Q 008482 316 YHRLPSEPDVGTDTNDATTSLWGGDLDLLQAICTLEFWILSFAMACGMGSGLATVNNISQIGGS----LGYSSFETSSLI 391 (564)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~t~~Fwll~~~~~~~~g~gl~~i~n~~~i~~~----~g~~~~~aa~~V 391 (564)
+ +++ + ..-...++.+|++.+|.+.+.+.+.......+.........+ .+.+....+...
T Consensus 206 ~-----~~~-----------~-~~~~~~~~~l~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 268 (420)
T PRK09528 206 A-----NAS-----------A-VSLKDALALLKLPKFWFLVLYVIGVACFYDVFDQQFPNFFASFFATPEQGTRVFGYLN 268 (420)
T ss_pred c-----ccc-----------c-ccHHHHHHHccCCCeEeehHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHH
Confidence 0 000 0 001134678899999987665544433322333344444443 244444456778
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHH-hcCcchHHHHHHHHHhhhccccchhHHHHHH
Q 008482 392 SLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIA-SGLPGALYAGSILVGVCYGSQWSLMPTIASE 470 (564)
Q Consensus 392 sl~si~n~~GRl~~G~lsD~l~~~~~~~R~~~l~~~~~l~~i~~ll~~-~~~~~~l~~~~~l~G~~~G~~~~~~P~ivse 470 (564)
++..+.+.++.+.+|+++||+++|+ .+.....+.+++.++.. ...+..+++...+.|++++......-..+.|
T Consensus 269 ~~~~~~~~~~~~~~g~l~dr~g~~~------~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~ 342 (420)
T PRK09528 269 SFQVFLEALIMFFAPFIINRIGAKN------ALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGVFKYITL 342 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcch------hhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888899999999999999997543 23444445555544443 2334445556677777777766666677889
Q ss_pred hhccCchhhhhhhH-hhhhhhHHHhhhhhhhhhhhhcccCCCCccccCCcccHHHHHHHHHHHHHHHHHHH
Q 008482 471 IFGVLQMGTIFNTI-TIANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSFFIMGSATLCGSLAAF 540 (564)
Q Consensus 471 ~FG~k~fg~nyg~~-~~a~~iG~~lf~~~l~g~iyD~~~~~~~~~C~G~~Cy~~af~i~~~l~v~a~vl~~ 540 (564)
.++.|..++.++.. ..+..+|.. +++.+.|+++|..+ |+.+|.+.+++.+++.++.+
T Consensus 343 ~~~~~~~a~~~~~~~~~~~~lg~~-ig~~~~G~l~~~~G------------~~~~f~~~~~~~~i~~~~~~ 400 (420)
T PRK09528 343 NFDVRLSATIYLVGFQFAKQLGAV-FLSTLAGNLYDSIG------------FQGTYLILGGIVLLFTLISV 400 (420)
T ss_pred HcCccceeeeeeehHHHHHHHHHH-HHHHHHHHHHHhhC------------chHHHHHHHHHHHHHHHHHH
Confidence 99999988888763 345566664 56668999999865 79999988877766664443
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.4e-17 Score=181.31 Aligned_cols=371 Identities=12% Similarity=0.044 Sum_probs=225.6
Q ss_pred hcCCCcchhhHHHHhhhhhccc-cccchhhhccccCCCCCCCccchhhhcccCcHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 008482 42 TQHYDQTTLDTVSVFKDIGANT-GTLSGVLYTYSTSDHSSHHPRQQRLTRLLGPWVVLLVGAIQCFAGYFLMWASVVGLI 120 (564)
Q Consensus 42 ~lg~sq~~~~~i~~a~~vg~~~-g~~~G~l~d~~~~~~~~~~~~~~~~~~~~GP~~~~~iG~vl~~~Gy~~~~l~~~g~i 120 (564)
++++|.++...+..+..++..+ .++.|.+.||+| +|.++.++.++..++.++.......
T Consensus 70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g------------------~r~~l~~~~~~~~~~~~~~~~~~~~-- 129 (465)
T TIGR00894 70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYV------------------FKWSIGIGMFLSSVISIVIPWAAGG-- 129 (465)
T ss_pred CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHhC------------------cchhhHHHHHHHHHHHHHHHHHHHc--
Confidence 6889999998887777777765 678888888765 9999999999888887775433221
Q ss_pred CCCCHHHHHHHHHHHhhhhhhhhHHHHHHHhhhcC-CCCcceeeeehhhhhhhHHHHHHHHHhhcCCCchhHHHHHHHHH
Q 008482 121 PRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFP-TYSGTAVGIMKGFVGLSGAILIQVYQTFFNNKPTSYLLLLALLA 199 (564)
Q Consensus 121 ~~~~~~~l~~~~~l~G~g~~~~~ta~l~t~~k~FP-~~RG~a~Gl~~a~~GLsa~i~s~i~~~~f~~~~~~~llfla~~p 199 (564)
+++.+.+..++.|.+.+..+.+......+||| ++||++.|+..++..++..+...
T Consensus 130 ---~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~--------------------- 185 (465)
T TIGR00894 130 ---GIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLP--------------------- 185 (465)
T ss_pred ---CchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHH---------------------
Confidence 24556677889999999999999999999998 68999999999988888876532
Q ss_pred HHHhhhhheeeee-ccCCCCcccccchhHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHhhhhhhhhhccC
Q 008482 200 SIDPLLLMWFVRI-CNTNEGNEKKHLNSFSLIALIVAAYLMVIIILEHIFALPFLVRVLTLILLLLLLASPLYVAIRVQG 278 (564)
Q Consensus 200 ~~~~~~~~~~i~~-~~~~~~~~~~~~~~~~~~~i~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~p~~~~~~~~~ 278 (564)
+...+ .+. .+.+ ..+ ....+.. ++. .++.... .+.++
T Consensus 186 -l~~~l----~~~~~gw~-----~~f---~i~~~~~----~~~--------------------~~~~~~~-----~~~~p 223 (465)
T TIGR00894 186 -ISGWL----CESWGGWP-----MIF---YVFGIVG----CAW--------------------SLLWFVF-----PADDP 223 (465)
T ss_pred -HHHHH----HhccCCCC-----eeh---hhhhHHH----HHH--------------------HHHHHHH-----hcCCc
Confidence 22111 111 0111 111 1100000 000 0000000 01101
Q ss_pred CCCCCCCcCccccCCCCCCCccchhhhccccCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCcHHHHhhcHHHHHHHHH
Q 008482 279 SDSDRTSETSFCEEDELTDDPHEMHAEKMHVRQDPVGYHRLPSEPDVGTDTNDATTSLWGGDLDLLQAICTLEFWILSFA 358 (564)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~t~~Fwll~~~ 358 (564)
++ +.+ . ++.|. +..+.. .++ +. + +......+++.++++.+|.+++.
T Consensus 224 ~~--~~~----------~-~~~~~--~~i~~~--~~~------~~--------~---~~~~~~~~~~~~~~~~~~~~~~~ 269 (465)
T TIGR00894 224 SI--HPC----------I-SKFEK--KYINSS--LQG------QK--------G---STRQSLPIKAIPKSLPVWAIWFA 269 (465)
T ss_pred cc--CCC----------C-CHHHH--HHHHhh--ccc------cc--------C---CCCCCCCHHHHhcCHHHHHHHHH
Confidence 00 000 0 00000 000000 000 00 0 00012357899999999999998
Q ss_pred HHhhhhchhheecchhHHHhh-cCCCccchhHHHHHHHHHHHHhhhhhhhhhhhhhhcccCchhHHHHHH----HHHHHH
Q 008482 359 MACGMGSGLATVNNISQIGGS-LGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVIT----LAAMSI 433 (564)
Q Consensus 359 ~~~~~g~gl~~i~n~~~i~~~-~g~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~R~~~l~~~----~~l~~i 433 (564)
.++.......+...++.+.++ .|++..+.+...++..+++.+++++.|+++||+.+|+...|.....+. .....+
T Consensus 270 ~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (465)
T TIGR00894 270 IFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGI 349 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHH
Confidence 888776666666777777754 688888888888999999999999999999999876543443221111 111111
Q ss_pred HHHHHHh-cCcch-HHHHHHHHHhhhccccchhHHHHHHhhccCchhhhhhhHhhhhhhHHHhhhhhhhhhhhhcccCCC
Q 008482 434 GHLIIAS-GLPGA-LYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASGE 511 (564)
Q Consensus 434 ~~ll~~~-~~~~~-l~~~~~l~G~~~G~~~~~~P~ivse~FG~k~fg~nyg~~~~a~~iG~~lf~~~l~g~iyD~~~~~~ 511 (564)
..+.... ..... ..+...+.+.+.+......-....|..+ ++.|...|+......+|+. +++.+.|.+.|.+..
T Consensus 350 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~l~~~-i~p~l~g~~~~~~~~-- 425 (465)
T TIGR00894 350 FAYALPYLSAAFYLTIIILTLANAVSSGPLAGVLINSLDLAP-RFLGFIKGITGLPGFIGGL-IASTLAGNILSQDSK-- 425 (465)
T ss_pred HHHHHHHcCCchHHHHHHHHHHHHHhhhhhhhhhhchhhcCh-hHHHHHHHHHHHHHHHHHH-HHHHhhheeeCCCCc--
Confidence 1111111 11111 2223334444444444433344456665 6899999999988888886 466788988876421
Q ss_pred CccccCCcccHHHHHHHHHHHHHHHHHHHHHH
Q 008482 512 GNKCTGTHCFMLSFFIMGSATLCGSLAAFGLF 543 (564)
Q Consensus 512 ~~~C~G~~Cy~~af~i~~~l~v~a~vl~~~l~ 543 (564)
+-|..+|.+.++.++++.++.....
T Consensus 426 -------~~~~~~f~~~~~~~~i~~i~~~~~~ 450 (465)
T TIGR00894 426 -------NVWLIVFLIMAFVNILCVIFYLIFG 450 (465)
T ss_pred -------hHHHHHHHHHHHHHHHHHHHeeeee
Confidence 1278999999988888876665433
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.7e-16 Score=168.56 Aligned_cols=344 Identities=12% Similarity=0.093 Sum_probs=210.6
Q ss_pred cccccccHHHHhhcCCCcchhhHHHHhhhhhccc-cccchhhhccccCCCCCCCccchhhhcccCcHHHHHHHHHHHHHH
Q 008482 30 YTFSIYSPALKTTQHYDQTTLDTVSVFKDIGANT-GTLSGVLYTYSTSDHSSHHPRQQRLTRLLGPWVVLLVGAIQCFAG 108 (564)
Q Consensus 30 Y~fS~ys~~L~~~lg~sq~~~~~i~~a~~vg~~~-g~~~G~l~d~~~~~~~~~~~~~~~~~~~~GP~~~~~iG~vl~~~G 108 (564)
+..+..-|.+++++|+|.+|.+.+..+..++..+ .++.|.+.||+| +|+++.++.++..++
T Consensus 20 ~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g------------------~r~~~~~~~~~~~~~ 81 (382)
T PRK10091 20 FGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYS------------------LKHILLFLVALCVIG 81 (382)
T ss_pred HHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCc------------------cHHHHHHHHHHHHHH
Confidence 3555577899999999999999888888888766 467888888764 999999999999999
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHhhhcCC-CCcceeeeehhhhhhhHHHHHHHHHhhcCCC
Q 008482 109 YFLMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFPT-YSGTAVGIMKGFVGLSGAILIQVYQTFFNNK 187 (564)
Q Consensus 109 y~~~~l~~~g~i~~~~~~~l~~~~~l~G~g~~~~~ta~l~t~~k~FP~-~RG~a~Gl~~a~~GLsa~i~s~i~~~~f~~~ 187 (564)
..+. +.. ++++.+...-++.|.+.+...........+++|+ +|+.+.|+..++..++..+..
T Consensus 82 ~~l~-----~~~--~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~---------- 144 (382)
T PRK10091 82 NAMF-----TLS--SSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGI---------- 144 (382)
T ss_pred HHHH-----HHh--CcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhc----------
Confidence 8874 233 3567777788889998888776666677888975 689888887777666665532
Q ss_pred chhHHHHHHHHHHHHhhhhheeeeeccCCCCcccccchhHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHh
Q 008482 188 PTSYLLLLALLASIDPLLLMWFVRICNTNEGNEKKHLNSFSLIALIVAAYLMVIIILEHIFALPFLVRVLTLILLLLLLA 267 (564)
Q Consensus 188 ~~~~llfla~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 267 (564)
.+... +.+..+.+ ..+.. ...+..+ .++
T Consensus 145 ------------~l~~~----l~~~~gwr--------~~f~~---~~~~~~~----------------------~~~--- 172 (382)
T PRK10091 145 ------------PLGTY----LSQEFSWR--------YTFLL---IAVFNIA----------------------VLA--- 172 (382)
T ss_pred ------------cHHHH----HhhhccHH--------HHHHH---HHHHHHH----------------------HHH---
Confidence 22111 11111110 00110 0000000 000
Q ss_pred hhhhhhhhccCCCCCCCCcCccccCCCCCCCccchhhhccccCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCcHHHHh
Q 008482 268 SPLYVAIRVQGSDSDRTSETSFCEEDELTDDPHEMHAEKMHVRQDPVGYHRLPSEPDVGTDTNDATTSLWGGDLDLLQAI 347 (564)
Q Consensus 268 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l 347 (564)
.... ..+ +. + + + + +++ .....+.+
T Consensus 173 -~~~~--~lp-~~-~--~------------~---------------~-------~~~---------------~~~~~~~~ 196 (382)
T PRK10091 173 -SIYF--WVP-DI-R--D------------E---------------A-------KGG---------------LREQFHFL 196 (382)
T ss_pred -HHHH--hCC-CC-C--c------------c---------------c-------ccC---------------HHHHHHHh
Confidence 0000 000 00 0 0 0 0 000 00123567
Q ss_pred hcHHHHHHHHHHHhhhhchhheecchhHHHhh-cCCCccchhHHHHHHHHHHHHhhhhhhhhhhhhhhcccCchhHHHHH
Q 008482 348 CTLEFWILSFAMACGMGSGLATVNNISQIGGS-LGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVI 426 (564)
Q Consensus 348 ~t~~Fwll~~~~~~~~g~gl~~i~n~~~i~~~-~g~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~R~~~l~~ 426 (564)
+++++|.+++..++.........+...+..++ .|+++...+...++.++++.+||++.|+++||++++ ..+..
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~------~~~~~ 270 (382)
T PRK10091 197 RSPAPWLIFAATMFGNAGVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPL------RIAAV 270 (382)
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCch------hHHHH
Confidence 88999998877666543333333445555554 688888888999999999999999999999999543 33445
Q ss_pred HHHHHHHHHHHHH--hcCcchHHHHHHHHHhhhccccch-hHHHHHHhhccCchhhhhhhHhhhhhhHHHhhhhhhhhhh
Q 008482 427 TLAAMSIGHLIIA--SGLPGALYAGSILVGVCYGSQWSL-MPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYI 503 (564)
Q Consensus 427 ~~~l~~i~~ll~~--~~~~~~l~~~~~l~G~~~G~~~~~-~P~ivse~FG~k~fg~nyg~~~~a~~iG~~lf~~~l~g~i 503 (564)
...+.+++.+++. ...+....+...+.++++++.... ....+.+.++.++.|...+ .....+|.. +++.+.|.+
T Consensus 271 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~~-~Gp~~~G~l 347 (382)
T PRK10091 271 TDFIIVLALLMLFFFGGMKTASLIFAFICCAGLFALSAPLQILLLQNAKGGELLGAAGG--QIAFNLGSA-IGAYCGGMM 347 (382)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcchHHHHHHH--HHHHHHHHH-HHHHHhHHH
Confidence 5555555554332 222222333444555555443332 2245566667676765422 223344443 455579999
Q ss_pred hhcccCCCCccccCCcccHHHHHHHHHHHHHHH
Q 008482 504 YDREASGEGNKCTGTHCFMLSFFIMGSATLCGS 536 (564)
Q Consensus 504 yD~~~~~~~~~C~G~~Cy~~af~i~~~l~v~a~ 536 (564)
+|.+.+ |+.+|.+.+.++++++
T Consensus 348 ~~~~~~-----------~~~~~~~~~~~~~~~~ 369 (382)
T PRK10091 348 LTLGLA-----------YNYVALPAALLSFAAM 369 (382)
T ss_pred HHcccC-----------cchHHHHHHHHHHHHH
Confidence 998776 8999998877776665
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.9e-17 Score=174.98 Aligned_cols=393 Identities=13% Similarity=0.045 Sum_probs=219.8
Q ss_pred ccHHHHhhcCCC--------cchhhHHHHhhhhhccc-cccchhhhccccCCCCCCCccchhhhcccCcHHHHHHHHHHH
Q 008482 35 YSPALKTTQHYD--------QTTLDTVSVFKDIGANT-GTLSGVLYTYSTSDHSSHHPRQQRLTRLLGPWVVLLVGAIQC 105 (564)
Q Consensus 35 ys~~L~~~lg~s--------q~~~~~i~~a~~vg~~~-g~~~G~l~d~~~~~~~~~~~~~~~~~~~~GP~~~~~iG~vl~ 105 (564)
.-++++++++++ +.|...+..+..++..+ .++.|.+.||+| +|.+++++.++.
T Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g------------------rr~~~~~~~~~~ 111 (481)
T TIGR00879 50 ALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFG------------------RKKSLLIIALLF 111 (481)
T ss_pred hhhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhh------------------hHHHHHHHHHHH
Confidence 345556666666 88888887777777755 678888888765 999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHhhhcC-CCCcceeeeehhhhhhhHHHHHHHH-H-h
Q 008482 106 FAGYFLMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFP-TYSGTAVGIMKGFVGLSGAILIQVY-Q-T 182 (564)
Q Consensus 106 ~~Gy~~~~l~~~g~i~~~~~~~l~~~~~l~G~g~~~~~ta~l~t~~k~FP-~~RG~a~Gl~~a~~GLsa~i~s~i~-~-~ 182 (564)
.+|..+.... ... .+++.+....++.|.|.+..+........+++| ++||++.|+...+.+++..+...+. . .
T Consensus 112 ~~~~~~~~~~--~~~--~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~ 187 (481)
T TIGR00879 112 VIGAILMGLA--AFA--LSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKV 187 (481)
T ss_pred HHHHHHHHHh--ccc--cchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhh
Confidence 9998875332 211 235667788899999999999988888999997 6799999999888888887755433 0 1
Q ss_pred hc-CCCchhHHHHHHHHHHHHhhhhheeeeeccCCCCcccccchhHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHH
Q 008482 183 FF-NNKPTSYLLLLALLASIDPLLLMWFVRICNTNEGNEKKHLNSFSLIALIVAAYLMVIIILEHIFALPFLVRVLTLIL 261 (564)
Q Consensus 183 ~f-~~~~~~~llfla~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~y~~~~~~~~~~~~~~~~~~~~~~~~ 261 (564)
+. +...-...+.+...+.+..++...+++..|..
T Consensus 188 ~~~~~~~w~~~f~~~~~~~~~~~~~~~~l~~~~~~--------------------------------------------- 222 (481)
T TIGR00879 188 SLNNTLGWRIPLGLQLIPAGLLFLGLFFLPESPRW--------------------------------------------- 222 (481)
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHHHhcCCCChHH---------------------------------------------
Confidence 10 00000111111111111111111111000000
Q ss_pred HHHHHhhhhhhhhhccCCCCCCCCcCccccCCCCCCCccchhhhccccCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCC
Q 008482 262 LLLLLASPLYVAIRVQGSDSDRTSETSFCEEDELTDDPHEMHAEKMHVRQDPVGYHRLPSEPDVGTDTNDATTSLWGGDL 341 (564)
Q Consensus 262 ~~~ll~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (564)
....++.++.++...+..+ ..+...+..++.... +..++. + .. ..+.
T Consensus 223 -------------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~----~---------~~----~~~~ 269 (481)
T TIGR00879 223 -------------LVGKGRVEEARKSLARLRG-TSGEDKELLDELELI--DIKRSI----E---------KR----SVQP 269 (481)
T ss_pred -------------HHHcCChHHHHHHHHHHhC-CCCCcHHHHHHHHHH--HHHHHH----H---------Hh----hccc
Confidence 0000000000000000000 000000000000000 000000 0 00 0001
Q ss_pred cHHHHh------hcHHHHHHHHHHHhhhhchhheecchhHHHhhcCCCccchhHHHHHHHHHHHHhhhhhhhhhhhhhhc
Q 008482 342 DLLQAI------CTLEFWILSFAMACGMGSGLATVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHV 415 (564)
Q Consensus 342 t~~~~l------~t~~Fwll~~~~~~~~g~gl~~i~n~~~i~~~~g~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~ 415 (564)
++++.+ +.+.+|...+.++........+......+.+..|++...+....++..+.+.+|+++.|+++||+++|
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~ 349 (481)
T TIGR00879 270 SWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRR 349 (481)
T ss_pred cHHHHHhcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 122222 23445555554444333333333445556677898887778888899999999999999999999643
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHH---h--cC------cchHHHHHHHHHhhhcccc-chhHHHHHHhhccCchhhhhhh
Q 008482 416 KEWARPLFMVITLAAMSIGHLIIA---S--GL------PGALYAGSILVGVCYGSQW-SLMPTIASEIFGVLQMGTIFNT 483 (564)
Q Consensus 416 ~~~~R~~~l~~~~~l~~i~~ll~~---~--~~------~~~l~~~~~l~G~~~G~~~-~~~P~ivse~FG~k~fg~nyg~ 483 (564)
..+...+.+++++++++. . .. ........++.+.++|..+ .+...++.|.++.++.|+..|+
T Consensus 350 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 423 (481)
T TIGR00879 350 ------PLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISI 423 (481)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHH
Confidence 223334444454444332 1 11 1122333444555555444 4455666999999999999999
Q ss_pred HhhhhhhHHHhhhhhhhhhhhhcccCCCCccccCCcccHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008482 484 ITIANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSFFIMGSATLCGSLAAFGLFLRT 546 (564)
Q Consensus 484 ~~~a~~iG~~lf~~~l~g~iyD~~~~~~~~~C~G~~Cy~~af~i~~~l~v~a~vl~~~l~~r~ 546 (564)
......+|+. .++.++|.++|..+ +...|.+.+++++++.++.++...++
T Consensus 424 ~~~~~~lg~~-i~~~~~~~~~~~~~------------~~~~f~~~~~~~~~~~i~~~~~~~~~ 473 (481)
T TIGR00879 424 AVAANWLANF-IVGFLFPTMLESIG------------VGGVFIFFGGLNVLGLIFVYFFLPET 473 (481)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHhcC------------ccceehhHHHHHHHHHHHHheecccC
Confidence 9888888886 45667899998754 57788888888888876665544333
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=1e-15 Score=167.48 Aligned_cols=406 Identities=13% Similarity=0.066 Sum_probs=234.8
Q ss_pred chhHHHHHHHHHHHHhcCcc-cccccccHHHHhhcCCCcchhhHHHHhhhhhccc-cccchhhhccccCCCCCCCccchh
Q 008482 10 NTRWVSTVASIWIQCTSGSL-YTFSIYSPALKTTQHYDQTTLDTVSVFKDIGANT-GTLSGVLYTYSTSDHSSHHPRQQR 87 (564)
Q Consensus 10 ~~Rw~~l~a~~~i~l~~G~~-Y~fS~ys~~L~~~lg~sq~~~~~i~~a~~vg~~~-g~~~G~l~d~~~~~~~~~~~~~~~ 87 (564)
+++|..+.+..+..+..+.. +..+...|++++++|+|+.|.+.+.....++..+ .++.|.+.||+|
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g------------ 83 (496)
T PRK03893 16 RAQWKAFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYG------------ 83 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC------------
Confidence 45566555444444444433 3556677899999999999999777777777755 577888888765
Q ss_pred hhcccCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHhhhcC-CCCcceeeeeh
Q 008482 88 LTRLLGPWVVLLVGAIQCFAGYFLMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFP-TYSGTAVGIMK 166 (564)
Q Consensus 88 ~~~~~GP~~~~~iG~vl~~~Gy~~~~l~~~g~i~~~~~~~l~~~~~l~G~g~~~~~ta~l~t~~k~FP-~~RG~a~Gl~~ 166 (564)
+|.+++++.++.+++..++... .+++.+....++.|++.+..+.+......++|| ++||.+.|+..
T Consensus 84 ------~r~~~~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 150 (496)
T PRK03893 84 ------RRLAMVISIVLFSVGTLACGFA-------PGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLI 150 (496)
T ss_pred ------cHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence 9999999999999998875442 246777778888999999888888888999998 56999999999
Q ss_pred hhhhhhHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhhhhheeeeeccCCC----Ccccc-cchh-HHH----------H
Q 008482 167 GFVGLSGAILIQVYQTFFNNKPTSYLLLLALLASIDPLLLMWFVRICNTNE----GNEKK-HLNS-FSL----------I 230 (564)
Q Consensus 167 a~~GLsa~i~s~i~~~~f~~~~~~~llfla~~p~~~~~~~~~~i~~~~~~~----~~~~~-~~~~-~~~----------~ 230 (564)
....+++.+-..+...+.+.-.-...++++..+....++. .+..|..+ +.+++ .... ... .
T Consensus 151 ~~~~~g~~~~~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~---~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (496)
T PRK03893 151 SGFSIGAVVAAQVYSLVVPVWGWRALFFIGILPIIFALWL---RKNLPEAEDWKEKHAGKAPVRTMVDILYRGEHRIINI 227 (496)
T ss_pred HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHH---HHhCCCchhhhhhccccccchhHHHHHhcchhHHHHH
Confidence 9999988777766655544322233334444444433222 12222211 00000 0000 000 0
Q ss_pred HHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHhhhhhhhhhccCCCCCCCCcCccccCCCCCCCccchhhhccccC
Q 008482 231 ALIVAAYLMVIIILEHIFALPFLVRVLTLILLLLLLASPLYVAIRVQGSDSDRTSETSFCEEDELTDDPHEMHAEKMHVR 310 (564)
Q Consensus 231 ~i~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (564)
........... ............. ....++..........+
T Consensus 228 ~~~~~~~~~~~---~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----------------------------------- 268 (496)
T PRK03893 228 LLTLAAAAALW---FCFAGNLQNAAIV-AVLGLLCAAIFISFMVQ----------------------------------- 268 (496)
T ss_pred HHHHHHHHHHH---HHHHhhhcchhHH-HHHHHHHHHHHHHHHHH-----------------------------------
Confidence 00000000000 0000000000000 00000000000000000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCccCCCCCCcHHHHhhcHHHHHHHHHHHhhhhchhheecchhHHHh-hcCCCccchhH
Q 008482 311 QDPVGYHRLPSEPDVGTDTNDATTSLWGGDLDLLQAICTLEFWILSFAMACGMGSGLATVNNISQIGG-SLGYSSFETSS 389 (564)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~t~~Fwll~~~~~~~~g~gl~~i~n~~~i~~-~~g~~~~~aa~ 389 (564)
.. . .+.+.++.+.+..++....+..+...++++.+ +.|+++.+++.
T Consensus 269 -----------~~----------------~------~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~~~~~~g~ 315 (496)
T PRK03893 269 -----------SS----------------G------KRWPTGVMLMVVVLFAFLYSWPIQALLPTYLKTDLGYDPHTVAN 315 (496)
T ss_pred -----------hc----------------c------cchhHHHHHHHHHHHHHhccchHHHHHHHHHHhhcCCCHHHHHH
Confidence 00 0 01122344444444433333334456777775 78999888899
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHH-hcCcc--hHHHHHHHHHhhhccccchhHH
Q 008482 390 LISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIA-SGLPG--ALYAGSILVGVCYGSQWSLMPT 466 (564)
Q Consensus 390 ~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~R~~~l~~~~~l~~i~~ll~~-~~~~~--~l~~~~~l~G~~~G~~~~~~P~ 466 (564)
..+...+.+.+|+++.|+++||+++| ..+.....+..+..+++. ..... .+.....+.++...+...+.|.
T Consensus 316 ~~~~~~~~~~~g~~~~g~l~dr~g~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (496)
T PRK03893 316 VLFFSGFGAAVGCCVGGFLGDWLGTR------KAYVCSLLISQLLIIPVFAIGGANVWVLGLLLFFQQMLGQGISGLLPK 389 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcch------HHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhcccchhhHH
Confidence 99999999999999999999999643 223333333333332222 21111 1222223334444456688999
Q ss_pred HHHHhhccCchhhhhhhHhhhhhhHHHhhhhhhhhhhhhcccCCCCccccCCcccHHHHHHHHHHHHH
Q 008482 467 IASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSFFIMGSATLC 534 (564)
Q Consensus 467 ivse~FG~k~fg~nyg~~~~a~~iG~~lf~~~l~g~iyD~~~~~~~~~C~G~~Cy~~af~i~~~l~v~ 534 (564)
++.|.+..++.|+.+|+......+|.. +++.+.|.++|+.+ |..++.+.++.+.+
T Consensus 390 ~~~~~~~~~~~g~~~~~~~~~~~~g~~-lgp~l~g~l~~~~g------------~~~~~~~~~~~~~~ 444 (496)
T PRK03893 390 LIGGYFDTEQRAAGLGFTYNVGALGGA-LAPILGALIAQRLD------------LGTALASLSFSLTF 444 (496)
T ss_pred HHHhhCCHHHhhcccchhhhhhhHHHH-HHHHHHHHHhccCC------------hHHHHHHHHHHHHH
Confidence 999999999999999998876677774 57778999999865 56676555444433
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.5e-16 Score=163.64 Aligned_cols=361 Identities=15% Similarity=0.161 Sum_probs=240.5
Q ss_pred ccccccccHHHHhhcCCCcchhhHH-HHhhhhhccccccchhhhccccCCCCCCCccchhhhcccCcHHHHHHHHHHHHH
Q 008482 29 LYTFSIYSPALKTTQHYDQTTLDTV-SVFKDIGANTGTLSGVLYTYSTSDHSSHHPRQQRLTRLLGPWVVLLVGAIQCFA 107 (564)
Q Consensus 29 ~Y~fS~ys~~L~~~lg~sq~~~~~i-~~a~~vg~~~g~~~G~l~d~~~~~~~~~~~~~~~~~~~~GP~~~~~iG~vl~~~ 107 (564)
=+.||.-.+++++.+|+|..|...+ ++..-.|...=++-|++.||+| ||.+..++.++..+
T Consensus 30 W~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfG------------------gR~~~~~s~~l~~I 91 (417)
T COG2223 30 WTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFG------------------GRKWTILSMLLLLI 91 (417)
T ss_pred HHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccC------------------chHHHHHHHHHHHH
Confidence 3566777789999999999999955 6666666666788888888775 99999998888777
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHhhhcC-CCCcceeeeehhhhhhhHHHHHHHHHhhcCC
Q 008482 108 GYFLMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFP-TYSGTAVGIMKGFVGLSGAILIQVYQTFFNN 186 (564)
Q Consensus 108 Gy~~~~l~~~g~i~~~~~~~l~~~~~l~G~g~~~~~ta~l~t~~k~FP-~~RG~a~Gl~~a~~GLsa~i~s~i~~~~f~~ 186 (564)
=.+.+..+ ..- +++|++...+++.|.+.+-+ ...+....+||| +++|+|.||-- .--++.++.. +.
T Consensus 92 P~~~~~~a--~~~--~~~~~ll~~gll~G~~GasF-av~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q-~~------ 158 (417)
T COG2223 92 PCLGLAFA--VTY--PSTWQLLVIGLLLGLAGASF-AVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQ-LV------ 158 (417)
T ss_pred HHHHHHHH--ccC--CchHHHHHHHHHHhccccee-hcccccccccCChhhhhHHHHHhc-cccccHHHHH-HH------
Confidence 66654333 322 45788889999998876544 466888889998 57999999976 3334444432 22
Q ss_pred CchhHHHHHHHHHHHHhhhhheeeeeccCCCCcccccchhHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHH
Q 008482 187 KPTSYLLLLALLASIDPLLLMWFVRICNTNEGNEKKHLNSFSLIALIVAAYLMVIIILEHIFALPFLVRVLTLILLLLLL 266 (564)
Q Consensus 187 ~~~~~llfla~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 266 (564)
.|.++...+.- .......+|.....+ ..++.
T Consensus 159 -----------~P~v~~~~g~~--------------------~w~~~~~i~~~~l~v------------------~~v~~ 189 (417)
T COG2223 159 -----------APLVAVAFGFL--------------------AWRNVAGIYVVALAI------------------AAVLA 189 (417)
T ss_pred -----------HHHHHHHHhhH--------------------HHHHHHHHHHHHHHH------------------HHHHH
Confidence 25554322210 000011122211100 00000
Q ss_pred hhhhhhhhhccCCCCCCCCcCccccCCCCCCCccchhhhccccCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCcHHHH
Q 008482 267 ASPLYVAIRVQGSDSDRTSETSFCEEDELTDDPHEMHAEKMHVRQDPVGYHRLPSEPDVGTDTNDATTSLWGGDLDLLQA 346 (564)
Q Consensus 267 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~ 346 (564)
.. ..+. . |+. + ...++ + .+...+.+
T Consensus 190 ~~----~~~d---------------------~--------------p~~-r-~~~~~------------~--~~~~~~~v 214 (417)
T COG2223 190 WL----GMND---------------------V--------------PEH-R-ASVKP------------Q--LPAQLKAV 214 (417)
T ss_pred HH----HhCC---------------------C--------------hhh-h-ccccc------------c--chhHHHHH
Confidence 00 0010 0 000 0 00000 0 01234667
Q ss_pred hhcHHHHHHHHHHHhhhhchhheecchhHHHhhc-CCCccchhHHHHHHHHHHHHhhhhhhhhhhhhhhcccCchhHHHH
Q 008482 347 ICTLEFWILSFAMACGMGSGLATVNNISQIGGSL-GYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMV 425 (564)
Q Consensus 347 l~t~~Fwll~~~~~~~~g~gl~~i~n~~~i~~~~-g~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~R~~~l~ 425 (564)
.+++|-|.+.+.++..-|+=..+.+-++++.++. |.++.+++....++.+.+.+-|...|++|||++. |. .+.
T Consensus 215 ~~~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg-----~r-v~~ 288 (417)
T COG2223 215 FSNKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGG-----RR-VTL 288 (417)
T ss_pred hcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccc-----hh-HHH
Confidence 8899999999999999998888888899999874 8888888899999999999999999999999973 22 244
Q ss_pred HHHHHHHHHHHHHHhc-------Ccch-----HHHHHHHHHhhhccccchhHHHHHHhhccCchhhhhhhHhhhhhhHHH
Q 008482 426 ITLAAMSIGHLIIASG-------LPGA-----LYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSY 493 (564)
Q Consensus 426 ~~~~l~~i~~ll~~~~-------~~~~-----l~~~~~l~G~~~G~~~~~~P~ivse~FG~k~fg~nyg~~~~a~~iG~~ 493 (564)
..+..++++...+... .+.. +....+..|++.|+.|-..|.+-.+ +.|..=|++.....+|.+
T Consensus 289 ~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~-----~~G~v~G~vga~G~lGGf 363 (417)
T COG2223 289 AVFVGMALAAALLSLFLTGFGHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPK-----ETGAVTGIVGAIGGLGGF 363 (417)
T ss_pred HHHHHHHHHHHHHHccccccccCcchHHHHHHHHHHHHHhccCcchheeechHHHHh-----hhhHHHHHHHHhcccccc
Confidence 4555555554443321 1111 2223455677778888777766654 788888888888999986
Q ss_pred hhhhhhhhhhhhcccCCCCccccCCcccHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008482 494 IFSVRVVGYIYDREASGEGNKCTGTHCFMLSFFIMGSATLCGSLAAFGLFLRTK 547 (564)
Q Consensus 494 lf~~~l~g~iyD~~~~~~~~~C~G~~Cy~~af~i~~~l~v~a~vl~~~l~~r~~ 547 (564)
+-+...|..||.+++ |+..|++....++++.++...++.|.|
T Consensus 364 -~lp~~~g~~~~~tg~-----------~~~~f~~~~~~~~~a~v~~~~~y~r~~ 405 (417)
T COG2223 364 -FLPLAFGVSLDLTGS-----------YTGAFMLLLAFYLVALVLTWALYARRR 405 (417)
T ss_pred -chhHHHHHHHHhccc-----------HHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 456789999999997 899999999999998877776665543
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=6.6e-16 Score=164.09 Aligned_cols=350 Identities=14% Similarity=0.077 Sum_probs=210.4
Q ss_pred cccccccHHHHhhcCCCcchhhHHHHhhhhhccc-cccchhhhccccCCCCCCCccchhhhcccCcHHHHHHHHHHHHHH
Q 008482 30 YTFSIYSPALKTTQHYDQTTLDTVSVFKDIGANT-GTLSGVLYTYSTSDHSSHHPRQQRLTRLLGPWVVLLVGAIQCFAG 108 (564)
Q Consensus 30 Y~fS~ys~~L~~~lg~sq~~~~~i~~a~~vg~~~-g~~~G~l~d~~~~~~~~~~~~~~~~~~~~GP~~~~~iG~vl~~~G 108 (564)
...++....+++++|+|.+|+..+..+..++..+ .++.|.+.||+| +|+++++|.+...++
T Consensus 33 ~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g------------------~r~~l~~~~~~~~~~ 94 (392)
T PRK12382 33 LPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYG------------------AKRSALQGMLACGLA 94 (392)
T ss_pred HHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhc------------------chHHHHHHHHHHHHH
Confidence 3445555578899999999999887777777765 678888888765 999999988877665
Q ss_pred HHHHHHHH-hcCCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHhhhcC-CCCcceeeeehhhhhhhHHHHHHHHHhhcCC
Q 008482 109 YFLMWASV-VGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFP-TYSGTAVGIMKGFVGLSGAILIQVYQTFFNN 186 (564)
Q Consensus 109 y~~~~l~~-~g~i~~~~~~~l~~~~~l~G~g~~~~~ta~l~t~~k~FP-~~RG~a~Gl~~a~~GLsa~i~s~i~~~~f~~ 186 (564)
.....+.. .......+++.+...-++.|.|.+...++......+++| ++||++.|+.-....++..+-
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g---------- 164 (392)
T PRK12382 95 GLAYLLAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAG---------- 164 (392)
T ss_pred HHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHH----------
Confidence 44321111 111111346666777888999999888888888889996 789999998665555544332
Q ss_pred CchhHHHHHHHHHHHHhhhhheeeeeccCCCCcccccchhHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHH
Q 008482 187 KPTSYLLLLALLASIDPLLLMWFVRICNTNEGNEKKHLNSFSLIALIVAAYLMVIIILEHIFALPFLVRVLTLILLLLLL 266 (564)
Q Consensus 187 ~~~~~llfla~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 266 (564)
|.+...+ .+..+. ....+...+.. ++.+.
T Consensus 165 ------------~~~~~~l----~~~~g~------------~~~~~~~~~~~-----------------------~~~~~ 193 (392)
T PRK12382 165 ------------APLGLLL----HSHFGF------------AALALTTMVLP-----------------------LLAWA 193 (392)
T ss_pred ------------HHHHHHH----HhccCh------------HHHHHHHHHHH-----------------------HHHHH
Confidence 3322111 111111 10000000000 00000
Q ss_pred hhhhhhhhhccCCCCCCCCcCccccCCCCCCCccchhhhccccCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCcHHHH
Q 008482 267 ASPLYVAIRVQGSDSDRTSETSFCEEDELTDDPHEMHAEKMHVRQDPVGYHRLPSEPDVGTDTNDATTSLWGGDLDLLQA 346 (564)
Q Consensus 267 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~ 346 (564)
.. +..++. + + +++ + +.+.++.
T Consensus 194 ~~------~~~~~~--~----------------~-------------~~~-----~-----------------~~~~~~~ 214 (392)
T PRK12382 194 FN------GTVRKV--P----------------A-------------HAG-----E-----------------RPSLWSV 214 (392)
T ss_pred HH------HhccCC--C----------------C-------------Ccc-----c-----------------CchHHHH
Confidence 00 000000 0 0 000 0 0012222
Q ss_pred hhcHHHHHHHHHHHhhhhchh-heecchhHHHhhcCCCccchhHHHHHHHHHHHHhhhhhhhhhhhhhhcccCchhHHHH
Q 008482 347 ICTLEFWILSFAMACGMGSGL-ATVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMV 425 (564)
Q Consensus 347 l~t~~Fwll~~~~~~~~g~gl-~~i~n~~~i~~~~g~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~R~~~l~ 425 (564)
++ .+|...+..++. +.+. ++......+.++.|.+ ......+..++.+..+++.+|.++||+++|+. +.
T Consensus 215 ~~--~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~------~~ 283 (392)
T PRK12382 215 VG--LIWKPGLGLALQ-GVGFAVIGTFVSLYFASKGWA--MAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKV------AI 283 (392)
T ss_pred HH--HHHHhHHHHHHH-HHHHhHHHHHHHHHHHhcCCc--hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCee------hH
Confidence 22 233322222221 1112 2222334555666664 34556777888899999999999999975432 23
Q ss_pred HHHHHHHHHHHHHHh-cCcchHHHHHHHHHhhhccccchhHHHHHHhhccCchhhhhhhHhhhhhhHHHhhhhhhhhhhh
Q 008482 426 ITLAAMSIGHLIIAS-GLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIY 504 (564)
Q Consensus 426 ~~~~l~~i~~ll~~~-~~~~~l~~~~~l~G~~~G~~~~~~P~ivse~FG~k~fg~nyg~~~~a~~iG~~lf~~~l~g~iy 504 (564)
....+.+++.+++.. .....+++..++.|+++|......+..+.|.++.|+.|+.+|+......+|.. +++.+.|.+.
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~-ig~~~~g~l~ 362 (392)
T PRK12382 284 VSLLVETVGLLLLWLAPTAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYG-VSGPLAGMLA 362 (392)
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 334444444444332 22223555678889999988888888999999999999999998877777764 5667899999
Q ss_pred hcccCCCCccccCCcccHHHHHHHHHHHHHHHHHHHH
Q 008482 505 DREASGEGNKCTGTHCFMLSFFIMGSATLCGSLAAFG 541 (564)
Q Consensus 505 D~~~~~~~~~C~G~~Cy~~af~i~~~l~v~a~vl~~~ 541 (564)
|..+ |+.+|.+.+++.+++.++.+.
T Consensus 363 ~~~g------------~~~~~~~~~~~~~~~~~~~~~ 387 (392)
T PRK12382 363 TSFG------------YPSVFLAGAISAVLGIIVTIL 387 (392)
T ss_pred HHhC------------chHHHHHHHHHHHHHHHHHHh
Confidence 9865 799999998888887765543
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.74 E-value=8.2e-16 Score=164.54 Aligned_cols=362 Identities=10% Similarity=0.052 Sum_probs=221.3
Q ss_pred chhHHHHHHHHHHHHhcCc-ccccccccHHHHhhcCCCcchhhHHHHhhhhhccc-cccchhhhccccCCCCCCCccchh
Q 008482 10 NTRWVSTVASIWIQCTSGS-LYTFSIYSPALKTTQHYDQTTLDTVSVFKDIGANT-GTLSGVLYTYSTSDHSSHHPRQQR 87 (564)
Q Consensus 10 ~~Rw~~l~a~~~i~l~~G~-~Y~fS~ys~~L~~~lg~sq~~~~~i~~a~~vg~~~-g~~~G~l~d~~~~~~~~~~~~~~~ 87 (564)
++-|..+........+.++ .|.-.-.-|++++++|+|.+|...+..+..++... .++.|.+.||+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~------------- 82 (394)
T PRK10213 16 RPNWSAVFSVAFCVACLIIVEFLPVSLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQAT------------- 82 (394)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccc-------------
Confidence 3457665555555444444 34444467889999999999999766665665544 56777777776
Q ss_pred hhcccCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHhhhcC-CCCcceeeeeh
Q 008482 88 LTRLLGPWVVLLVGAIQCFAGYFLMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFP-TYSGTAVGIMK 166 (564)
Q Consensus 88 ~~~~~GP~~~~~iG~vl~~~Gy~~~~l~~~g~i~~~~~~~l~~~~~l~G~g~~~~~ta~l~t~~k~FP-~~RG~a~Gl~~ 166 (564)
|+|.++.++.++..+++.+.. .. ++++.+...-++.|.+.+..+..+.....++|| ++||.+.|+..
T Consensus 83 -----grr~~~~~~~~~~~~~~~~~~-----~~--~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~ 150 (394)
T PRK10213 83 -----DRRYVVILFAVLLTLSCLLVS-----FA--NSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIF 150 (394)
T ss_pred -----CcHHHHHHHHHHHHHHHHHHH-----HH--ChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHH
Confidence 499999999999999887742 22 357777788889999999988888888899997 57999999999
Q ss_pred hhhhhhHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhhhhheeeeeccCCCCcccccchhHHHHHHHHHHHHHHHHHHhh
Q 008482 167 GFVGLSGAILIQVYQTFFNNKPTSYLLLLALLASIDPLLLMWFVRICNTNEGNEKKHLNSFSLIALIVAAYLMVIIILEH 246 (564)
Q Consensus 167 a~~GLsa~i~s~i~~~~f~~~~~~~llfla~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~y~~~~~~~~~ 246 (564)
+..+++..+- |.+...+. +..+.+ . .|... + +.
T Consensus 151 ~~~~~g~~ig----------------------~~l~~~l~----~~~gw~-----~---~f~~~----~---~l------ 183 (394)
T PRK10213 151 GAVSIALVIA----------------------APLGSFLG----ELIGWR-----N---VFNAA----A---VM------ 183 (394)
T ss_pred HHHHHHHHHH----------------------HHHHHHHH----hhcCHH-----H---HHHHH----H---HH------
Confidence 8888887654 33322211 111111 0 01000 0 00
Q ss_pred hccCchHHHHHHHHHHHHHHhhhhhhhhhccCCCCCCCCcCccccCCCCCCCccchhhhccccCCCCCCCCCCCCCCCCC
Q 008482 247 IFALPFLVRVLTLILLLLLLASPLYVAIRVQGSDSDRTSETSFCEEDELTDDPHEMHAEKMHVRQDPVGYHRLPSEPDVG 326 (564)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~ll~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (564)
..+..+ .... ..+ +. +. + ++
T Consensus 184 ------------~~~~~l----~~~~--~~p-~~------------------~~-------------~-------~~--- 203 (394)
T PRK10213 184 ------------GVLCIF----WIIK--SLP-SL------------------PG-------------E-------PS--- 203 (394)
T ss_pred ------------HHHHHH----HHHH--HCC-CC------------------Cc-------------c-------cc---
Confidence 000000 0000 000 00 00 0 00
Q ss_pred CCCCCCCccCCCCCCcHHHHhhcHHHHHHHHHHHhhhhchhheecchhHHH-hhcCCCccchhHHHHHHHHHHHHhhhhh
Q 008482 327 TDTNDATTSLWGGDLDLLQAICTLEFWILSFAMACGMGSGLATVNNISQIG-GSLGYSSFETSSLISLWSIWNFLGRFGA 405 (564)
Q Consensus 327 ~~~~~~~~~~~~~~~t~~~~l~t~~Fwll~~~~~~~~g~gl~~i~n~~~i~-~~~g~~~~~aa~~Vsl~si~n~~GRl~~ 405 (564)
+ ...+.++.++++.+|.+.+..++.......+.....+.. ++.|+++.+.+...+..++++.+|++++
T Consensus 204 ---------~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~ 272 (394)
T PRK10213 204 ---------H--QKQNTFRLLQRPGVMAGMIAIFMSFAGQFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLS 272 (394)
T ss_pred ---------c--chhHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHH
Confidence 0 011246788999999987765555444434444554544 5678888777888888999999999999
Q ss_pred hhhhhhhhhcccCchhHHHHHHHHHHHHHHHHH-HhcCcchHHHHHHHHHhhhccccchhHHHHHHhhccCchhhhhhhH
Q 008482 406 GYVSDYFLHVKEWARPLFMVITLAAMSIGHLII-ASGLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTI 484 (564)
Q Consensus 406 G~lsD~l~~~~~~~R~~~l~~~~~l~~i~~ll~-~~~~~~~l~~~~~l~G~~~G~~~~~~P~ivse~FG~k~fg~nyg~~ 484 (564)
|.+.||.. |...+...........++. ....+..+++..++.|++++......+..+.+... ++.+...+..
T Consensus 273 ~~l~~r~~------~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 345 (394)
T PRK10213 273 SFILKRSV------KLALAGAPLVLAVSALVLTLWGSDKIVATGVAIIWGLTFALVPVGWSTWITRSLA-DQAEKAGSIQ 345 (394)
T ss_pred HHHHhccc------hhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHCc-ccHHHHHHHH
Confidence 99888842 2222222222222222222 22233346667788899999999888877776653 5555555554
Q ss_pred hhhhhhHHHhhhhhhhhhhhhcccCCCCccccCCcccHHHHHHHHHHHHH
Q 008482 485 TIANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSFFIMGSATLC 534 (564)
Q Consensus 485 ~~a~~iG~~lf~~~l~g~iyD~~~~~~~~~C~G~~Cy~~af~i~~~l~v~ 534 (564)
+....+|.. .++.++|.++|+.+ +...|...++++++
T Consensus 346 ~~~~~lg~~-~G~~l~G~l~~~~g------------~~~~~~~~~~~~~~ 382 (394)
T PRK10213 346 VAVIQLANT-CGAAIGGYALDNIG------------LTSPLMLSGTLMLL 382 (394)
T ss_pred HHHHHHHHH-HHHHHHHHHHhccC------------hhhHHHHHHHHHHH
Confidence 444444443 35557999999865 46666665554433
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.3e-16 Score=170.31 Aligned_cols=194 Identities=13% Similarity=0.034 Sum_probs=141.0
Q ss_pred cHHHHhhcHHHHHHHHHHHhhhhchhheecchhHHHhhcCCCc--------cchhHHHHHHHHHHHHhhhhhhhhhhhhh
Q 008482 342 DLLQAICTLEFWILSFAMACGMGSGLATVNNISQIGGSLGYSS--------FETSSLISLWSIWNFLGRFGAGYVSDYFL 413 (564)
Q Consensus 342 t~~~~l~t~~Fwll~~~~~~~~g~gl~~i~n~~~i~~~~g~~~--------~~aa~~Vsl~si~n~~GRl~~G~lsD~l~ 413 (564)
+.++.+|+++||.+.+..++....-.....+.....++.|.++ +..+..+++..+....+++..|+++||++
T Consensus 200 ~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g 279 (418)
T TIGR00889 200 DAFILFKNKRMAIFFFFSMLLGAPLQITNIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFG 279 (418)
T ss_pred hHHHHhcCCCeeeHHHHHHHHHhHHHHHHHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4567899999999888877764433333344555566667554 34578889999999999999999999995
Q ss_pred hcccCchhHHHHHHHHHHHHHHHHHHhcC--c---chHHHHHHHHHhhhccccchhHHHHHHhhccCchhhhhhhHh-hh
Q 008482 414 HVKEWARPLFMVITLAAMSIGHLIIASGL--P---GALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTIT-IA 487 (564)
Q Consensus 414 ~~~~~~R~~~l~~~~~l~~i~~ll~~~~~--~---~~l~~~~~l~G~~~G~~~~~~P~ivse~FG~k~fg~nyg~~~-~a 487 (564)
+ .+.+....++.+++..++.... + ..+++..++.|+++|......+.+++|.++.++.|+.+|+.. ..
T Consensus 280 ~------r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~ 353 (418)
T TIGR00889 280 I------KKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMC 353 (418)
T ss_pred c------HHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
Confidence 3 3445555556666554443211 1 134556788999999888888999999999999999999996 56
Q ss_pred hhhHHHhhhhhhhhhhhhcccCCCCccccCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 008482 488 NPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSFFIMGSATLCGSLAAFGLFLRTKR 548 (564)
Q Consensus 488 ~~iG~~lf~~~l~g~iyD~~~~~~~~~C~G~~Cy~~af~i~~~l~v~a~vl~~~l~~r~~~ 548 (564)
..+|.. +++.+.|.++|+.++.. ..-|+.+|.+.++.++++.++..+..++.++
T Consensus 354 ~~lg~~-iGp~l~G~l~~~~g~~~------~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~~ 407 (418)
T TIGR00889 354 NGFGSL-LGYILSGVMVEKMFAYG------TFDWQTMWLFFAGYIAILAVLFMIFFKYSHN 407 (418)
T ss_pred HhhHHH-HHHHHHHHHHHHhcccc------CCchHHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence 777874 67889999999865310 0128999999988888888777766654443
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=6.9e-16 Score=163.72 Aligned_cols=354 Identities=11% Similarity=0.064 Sum_probs=216.5
Q ss_pred HHHHHHHHHHHHhcCcccccccccHHHHhhcCCCcchhhHHHHhhhhhccc-cccchhhhccccCCCCCCCccchhhhcc
Q 008482 13 WVSTVASIWIQCTSGSLYTFSIYSPALKTTQHYDQTTLDTVSVFKDIGANT-GTLSGVLYTYSTSDHSSHHPRQQRLTRL 91 (564)
Q Consensus 13 w~~l~a~~~i~l~~G~~Y~fS~ys~~L~~~lg~sq~~~~~i~~a~~vg~~~-g~~~G~l~d~~~~~~~~~~~~~~~~~~~ 91 (564)
|+.+.+..+..+..+. ...+-|++++++|+|.+|+..+..+..++..+ .++.|.+.||+|
T Consensus 9 ~~~~~~~~~~~~~~~~---~~~~lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g---------------- 69 (381)
T PRK03633 9 LLLLCGLLLLTLAIAV---LNTLVPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIG---------------- 69 (381)
T ss_pred HHHHHHHHHHHHhhhh---HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH----------------
Confidence 4445444455544443 33557888889999999999888888888765 567888888765
Q ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHhhhcC-CCCcceeeeehhhhh
Q 008482 92 LGPWVVLLVGAIQCFAGYFLMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFP-TYSGTAVGIMKGFVG 170 (564)
Q Consensus 92 ~GP~~~~~iG~vl~~~Gy~~~~l~~~g~i~~~~~~~l~~~~~l~G~g~~~~~ta~l~t~~k~FP-~~RG~a~Gl~~a~~G 170 (564)
+|.++.+|.++..+++.+.. .. ++++.+....++.|.+.+...........+.+| ++||.+.|+...+..
T Consensus 70 --~k~~~~~~~~~~~~~~~~~~-----~~--~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (381)
T PRK03633 70 --FNRSYYLASLIFAAGCAGLG-----LM--VGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYY 140 (381)
T ss_pred --HHHHHHHHHHHHHHHHHHHH-----Hh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 99999999999999988743 22 246666777788899988877665555556665 689999998888888
Q ss_pred hhHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhhhhheeeeeccCCCCcccccchhHHHHHHHHHHHHHHHHHHhhhccC
Q 008482 171 LSGAILIQVYQTFFNNKPTSYLLLLALLASIDPLLLMWFVRICNTNEGNEKKHLNSFSLIALIVAAYLMVIIILEHIFAL 250 (564)
Q Consensus 171 Lsa~i~s~i~~~~f~~~~~~~llfla~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~y~~~~~~~~~~~~~ 250 (564)
++..+-. .+... +.+.. . .. ..... . +..
T Consensus 141 ~g~~~g~----------------------~~~~~----l~~~~--~-----~~---~~~~~-~---~~~----------- 169 (381)
T PRK03633 141 LGTVLGQ----------------------LLVSK----VSTEL--M-----SV---LPWVT-G---LVL----------- 169 (381)
T ss_pred HHHHHHH----------------------HHHhc----ccccc--c-----ch---HHHHH-H---HHH-----------
Confidence 7776643 22211 11000 0 00 00000 0 000
Q ss_pred chHHHHHHHHHHHHHHhhhhhhhhhccCCCCCCCCcCccccCCCCCCCccchhhhccccCCCCCCCCCCCCCCCCCCCCC
Q 008482 251 PFLVRVLTLILLLLLLASPLYVAIRVQGSDSDRTSETSFCEEDELTDDPHEMHAEKMHVRQDPVGYHRLPSEPDVGTDTN 330 (564)
Q Consensus 251 ~~~~~~~~~~~~~~ll~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (564)
. ...++.. .+.+ ++ . + + + +
T Consensus 170 ------------~--~~~~~~~-~~~~-~~---~---------------~-------------~-~-----~-------- 188 (381)
T PRK03633 170 ------------A--AILPLLF-TRIL-NQ---Q---------------A-------------E-N-----H-------- 188 (381)
T ss_pred ------------H--HHHHHHH-hccc-CC---C---------------C-------------C-C-----C--------
Confidence 0 0000000 0000 00 0 0 0 0 0
Q ss_pred CCCccCCCCCCcHHHHhhcHHHHHHHHHHHhhhhchh-heecchhHHHhhcCCCccchhHHHHHHHHHHHHhhhhhhhhh
Q 008482 331 DATTSLWGGDLDLLQAICTLEFWILSFAMACGMGSGL-ATVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVS 409 (564)
Q Consensus 331 ~~~~~~~~~~~t~~~~l~t~~Fwll~~~~~~~~g~gl-~~i~n~~~i~~~~g~~~~~aa~~Vsl~si~n~~GRl~~G~ls 409 (564)
++.+.++.++++.||......++. +... .+.+-++.+.++.|.++...+..+++..+.+.+||+..|+++
T Consensus 189 --------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~ 259 (381)
T PRK03633 189 --------DSTSIWPMLKLRQARLGVNGCIIS-GIVLGSLYGLMPLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLA 259 (381)
T ss_pred --------CCCCHHHHHHhcchHHHHHHHHHH-HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 011346778888888764433222 1111 122234556677888877778889999999999999999999
Q ss_pred hhhhhcccCchhHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHhhhccccchhHHHHHHhhccCchhhhhhhHhhhhh
Q 008482 410 DYFLHVKEWARPLFMVITLAAMSIGHLIIASGLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANP 489 (564)
Q Consensus 410 D~l~~~~~~~R~~~l~~~~~l~~i~~ll~~~~~~~~l~~~~~l~G~~~G~~~~~~P~ivse~FG~k~fg~nyg~~~~a~~ 489 (564)
||+++| ..+.....+..++.+++. . ....+.+..+.|++.+..+...-..+.|....++.+.-++....+..
T Consensus 260 dr~~~~------~~l~~~~~~~~~~~~~~~-~-~~~~~~~~~l~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (381)
T PRK03633 260 DRFGRL------LVLRVQVFVVILGSIAML-S-QAAMAPALFILGAAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYT 331 (381)
T ss_pred HHcCcH------HHHHHHHHHHHHHHHHHh-h-hHHHHHHHHHHHHHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 999543 334444444444443332 1 11233455666777666666666667788877676766666666667
Q ss_pred hHHHhhhhhhhhhhhhcccCCCCccccCCcccHHHHHHHHHHHHHHH
Q 008482 490 VGSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSFFIMGSATLCGS 536 (564)
Q Consensus 490 iG~~lf~~~l~g~iyD~~~~~~~~~C~G~~Cy~~af~i~~~l~v~a~ 536 (564)
+|.. +++.+.|.++|..+ ++..|.+.+.+.+++.
T Consensus 332 lG~~-igp~~~G~l~~~~g------------~~~~f~~~~~~~l~~~ 365 (381)
T PRK03633 332 VGSL-LGPSFTAMLMQNYS------------DNLLFIMIASVSFIYL 365 (381)
T ss_pred HHHH-HHHHHHHHHHHHhC------------ccHHHHHHHHHHHHHH
Confidence 7764 57778999999865 5788887665555443
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.3e-15 Score=163.99 Aligned_cols=383 Identities=11% Similarity=0.048 Sum_probs=215.1
Q ss_pred cccccccccHHHHhhcCCCcchhhHHHHhhhhhccc-cccchhhhccccCCCCCCCccchhhhcccCcHHHHHHHHHHHH
Q 008482 28 SLYTFSIYSPALKTTQHYDQTTLDTVSVFKDIGANT-GTLSGVLYTYSTSDHSSHHPRQQRLTRLLGPWVVLLVGAIQCF 106 (564)
Q Consensus 28 ~~Y~fS~ys~~L~~~lg~sq~~~~~i~~a~~vg~~~-g~~~G~l~d~~~~~~~~~~~~~~~~~~~~GP~~~~~iG~vl~~ 106 (564)
..+.++.+-|.+.+++|+|+.+...+.++..++..+ .++.|.+.||+| +|.+.+++.++..
T Consensus 25 ~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g------------------~r~~~~~~~~~~~ 86 (471)
T PRK10504 25 DTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVG------------------VRNIFFTAIVLFT 86 (471)
T ss_pred hHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------------------hHHHHHHHHHHHH
Confidence 445666788889999999999988776776777544 567788888764 8999999988888
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHhhhcCC-CCcceeeeehhhhhhhHHHHHHHHHhhcC
Q 008482 107 AGYFLMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFPT-YSGTAVGIMKGFVGLSGAILIQVYQTFFN 185 (564)
Q Consensus 107 ~Gy~~~~l~~~g~i~~~~~~~l~~~~~l~G~g~~~~~ta~l~t~~k~FP~-~RG~a~Gl~~a~~GLsa~i~s~i~~~~f~ 185 (564)
+++++.. .. .+.+.+....++.|.|.+...........+++|+ +||.+.|+......+++.+-..+.....+
T Consensus 87 ~~~~~~~-----~~--~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~ 159 (471)
T PRK10504 87 LGSLFCA-----LS--GTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVE 159 (471)
T ss_pred HHHHHHH-----Hh--CCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHh
Confidence 8887632 22 2466677778889999988888877888899984 68999998887777777665544433332
Q ss_pred CCchhHHHHH-HHHHHHHhhhhheeeeeccCCCCcccccchhHHHHHHHHHHHHHHHHHHhhhccCc-hHHHHHHHHHHH
Q 008482 186 NKPTSYLLLL-ALLASIDPLLLMWFVRICNTNEGNEKKHLNSFSLIALIVAAYLMVIIILEHIFALP-FLVRVLTLILLL 263 (564)
Q Consensus 186 ~~~~~~llfl-a~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~y~~~~~~~~~~~~~~-~~~~~~~~~~~~ 263 (564)
...-...+.+ .....+..++..... |..+. ++++++.-................ +...... .........+..
T Consensus 160 ~~gw~~~f~~~~~~~~l~~~~~~~~~---~~~~~-~~~r~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 234 (471)
T PRK10504 160 YASWHWIFLINIPVGIIGAIATLMLM---PNYTM-QTRRFDLSGFLLLAVGMATLTLAL-DGSKGLGLSPLAIAGLVAVG 234 (471)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHhC---CCccc-cCCCCChHHHHHHHHHHHHHHHHH-hcCCcCCcchHHHHHHHHHH
Confidence 2211112211 111111111111111 11111 111111111110011111110000 1100000 000000000000
Q ss_pred HHHhhhhhhhhhccCCCCCCCCcCccccCCCCCCCccchhhhccccCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCcH
Q 008482 264 LLLASPLYVAIRVQGSDSDRTSETSFCEEDELTDDPHEMHAEKMHVRQDPVGYHRLPSEPDVGTDTNDATTSLWGGDLDL 343 (564)
Q Consensus 264 ~ll~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ 343 (564)
+++... ...+ ++. ++ + +-.+
T Consensus 235 ~~~~~~--~~~~----~~~------------------------------~~-------~----------------~~~~- 254 (471)
T PRK10504 235 VVALLL--YLLH----ARN------------------------------NN-------R----------------ALFS- 254 (471)
T ss_pred HHHHHH--HHHH----Hhc------------------------------CC-------C----------------CccC-
Confidence 000000 0000 000 00 0 0011
Q ss_pred HHHhhcHHHHHHHHHHHhhhhchhheecchhH-HHhh-cCCCccchhHHHHHHHHHHHHhhhhhhhhhhhhhhcccCchh
Q 008482 344 LQAICTLEFWILSFAMACGMGSGLATVNNISQ-IGGS-LGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARP 421 (564)
Q Consensus 344 ~~~l~t~~Fwll~~~~~~~~g~gl~~i~n~~~-i~~~-~g~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~R~ 421 (564)
.+.+|++.|+......++.... ....++..+ +.+. .|.++...........+....+++++|.++||+++|
T Consensus 255 ~~l~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~------ 327 (471)
T PRK10504 255 LKLFRTRTFSLGLAGSFAGRIG-SGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYR------ 327 (471)
T ss_pred HHHhcccchHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCch------
Confidence 3578999999987777766443 333344444 4453 688877777788888888899999999999999542
Q ss_pred HHHHHHHHHHHHHHHHHHh-c-Ccc--hHHHHHHHHHhhhccccchhHHHHHHhhccCchhhhhhhHhhhhhhHHHhhhh
Q 008482 422 LFMVITLAAMSIGHLIIAS-G-LPG--ALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSV 497 (564)
Q Consensus 422 ~~l~~~~~l~~i~~ll~~~-~-~~~--~l~~~~~l~G~~~G~~~~~~P~ivse~FG~k~fg~nyg~~~~a~~iG~~lf~~ 497 (564)
..+.....+.+++.+++.. . ... .+.+...+.|++.|..++....++.+.+..++.|..+++.....-+|.- +++
T Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~-ig~ 406 (471)
T PRK10504 328 RVLVATTLGLALVSLLFMLVALLGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMS-IGV 406 (471)
T ss_pred HHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHH-HHH
Confidence 2334444444444333322 1 111 1334456778888888888899999999999999999988765555553 344
Q ss_pred hhhhhhhhccc
Q 008482 498 RVVGYIYDREA 508 (564)
Q Consensus 498 ~l~g~iyD~~~ 508 (564)
.+.|.+.|..+
T Consensus 407 ~i~g~ll~~~g 417 (471)
T PRK10504 407 TIAGLLLGLFG 417 (471)
T ss_pred HHHHHHHHHhh
Confidence 55666666543
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.72 E-value=8.2e-16 Score=157.80 Aligned_cols=332 Identities=19% Similarity=0.192 Sum_probs=245.5
Q ss_pred cccccccccHHHHhhcCCCcchhhHHHHhhhhhccc-cccchhhhccccCCCCCCCccchhhhcccCcHHHHHHHHHHHH
Q 008482 28 SLYTFSIYSPALKTTQHYDQTTLDTVSVFKDIGANT-GTLSGVLYTYSTSDHSSHHPRQQRLTRLLGPWVVLLVGAIQCF 106 (564)
Q Consensus 28 ~~Y~fS~ys~~L~~~lg~sq~~~~~i~~a~~vg~~~-g~~~G~l~d~~~~~~~~~~~~~~~~~~~~GP~~~~~iG~vl~~ 106 (564)
..+.++.+.+.+.+++|.++.|.+.+.....++..+ .++.|.+.||+| +|..+.++.++..
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g------------------~r~~~~~~~~~~~ 75 (352)
T cd06174 14 DRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFG------------------RRRVLLLGLLLFA 75 (352)
T ss_pred hhhhhHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhC------------------CchhhHHHHHHHH
Confidence 345677788889999999999999888888888765 678888888865 8999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHhhhcCC-CCcceeeeehhhhhhhHHHHHHHHHhhcC
Q 008482 107 AGYFLMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFPT-YSGTAVGIMKGFVGLSGAILIQVYQTFFN 185 (564)
Q Consensus 107 ~Gy~~~~l~~~g~i~~~~~~~l~~~~~l~G~g~~~~~ta~l~t~~k~FP~-~RG~a~Gl~~a~~GLsa~i~s~i~~~~f~ 185 (564)
+++.+..+. .+++.+....++.|.+.+..+.+......+++|+ +|+++.|+......+++.+...+...+
T Consensus 76 ~~~~~~~~~-------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-- 146 (352)
T cd06174 76 LGSLLLAFA-------SSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLL-- 146 (352)
T ss_pred HHHHHHHHh-------ccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHH--
Confidence 999986554 2467777788889999999999999999999985 899999999988888887654222111
Q ss_pred CCchhHHHHHHHHHHHHhhhhheeeeeccCCCCcccccchhHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHH
Q 008482 186 NKPTSYLLLLALLASIDPLLLMWFVRICNTNEGNEKKHLNSFSLIALIVAAYLMVIIILEHIFALPFLVRVLTLILLLLL 265 (564)
Q Consensus 186 ~~~~~~llfla~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~l 265 (564)
.+..+.+ ..+.. ... ..++. .+
T Consensus 147 ------------------------~~~~~~~--------~~~~~---~~~-~~~~~---------------------~~- 168 (352)
T cd06174 147 ------------------------AESLGWR--------WLFLI---LAI-LGLLL---------------------AL- 168 (352)
T ss_pred ------------------------HHHhhHH--------HHHHH---HHH-HHHHH---------------------HH-
Confidence 0000000 00000 000 00000 00
Q ss_pred HhhhhhhhhhccCCCCCCCCcCccccCCCCCCCccchhhhccccCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCcHHH
Q 008482 266 LASPLYVAIRVQGSDSDRTSETSFCEEDELTDDPHEMHAEKMHVRQDPVGYHRLPSEPDVGTDTNDATTSLWGGDLDLLQ 345 (564)
Q Consensus 266 l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~ 345 (564)
... -.+
T Consensus 169 ~~~-------------------------------------------------------------------------~~~- 174 (352)
T cd06174 169 LLL-------------------------------------------------------------------------FLL- 174 (352)
T ss_pred HHH-------------------------------------------------------------------------HHH-
Confidence 000 000
Q ss_pred HhhcHHHHHHHHHHHhhhhchhheecchhHHHhhc-CCCccchhHHHHHHHHHHHHhhhhhhhhhhhhhhcccCchhHHH
Q 008482 346 AICTLEFWILSFAMACGMGSGLATVNNISQIGGSL-GYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFM 424 (564)
Q Consensus 346 ~l~t~~Fwll~~~~~~~~g~gl~~i~n~~~i~~~~-g~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~R~~~l 424 (564)
+++|.+.+..++.......+.....++.++. +.++.+.+...+...+.+.++++.+|.++||+++|+. .+
T Consensus 175 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-----~~ 245 (352)
T cd06174 175 ----RLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRL-----LL 245 (352)
T ss_pred ----HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH-----HH
Confidence 6788888887777777777777777788776 8888888889999999999999999999999965321 44
Q ss_pred HHHHHHHHHHHHHHHhc-CcchHHHHHHHHHhhhccccchhHHHHHHhhccCchhhhhhhHhhhhhhHHHhhhhhhhhhh
Q 008482 425 VITLAAMSIGHLIIASG-LPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYI 503 (564)
Q Consensus 425 ~~~~~l~~i~~ll~~~~-~~~~l~~~~~l~G~~~G~~~~~~P~ivse~FG~k~fg~nyg~~~~a~~iG~~lf~~~l~g~i 503 (564)
.....+..+++++.... ....+++...+.|++.+..+...+..+.|.+..|+.|+.+|+......+|.. .++.+.|.+
T Consensus 246 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~i~g~l 324 (352)
T cd06174 246 LIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGA-LGPLLAGLL 324 (352)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 55555556665554332 2335677888999999999999999999999999999999999888888875 567789999
Q ss_pred hhcccCCCCccccCCcccHHHHHHHHHHHHHHHHHHH
Q 008482 504 YDREASGEGNKCTGTHCFMLSFFIMGSATLCGSLAAF 540 (564)
Q Consensus 504 yD~~~~~~~~~C~G~~Cy~~af~i~~~l~v~a~vl~~ 540 (564)
+|..+ ++..|.+..++++++.++..
T Consensus 325 ~~~~~------------~~~~~~~~~~~~~i~~i~~~ 349 (352)
T cd06174 325 LDTGG------------YGGVFLILAALALLAALLLL 349 (352)
T ss_pred hcccC------------cchHHHHHHHHHHHHHHHhe
Confidence 98643 79999999988888776543
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.4e-15 Score=165.40 Aligned_cols=381 Identities=15% Similarity=0.101 Sum_probs=228.5
Q ss_pred ccccccHHHHhhcCCCcchhhHHHHhhhhhccc-cccchhhhccccCCCCCCCccchhhhcccCcHHHHHHHHHHHHHHH
Q 008482 31 TFSIYSPALKTTQHYDQTTLDTVSVFKDIGANT-GTLSGVLYTYSTSDHSSHHPRQQRLTRLLGPWVVLLVGAIQCFAGY 109 (564)
Q Consensus 31 ~fS~ys~~L~~~lg~sq~~~~~i~~a~~vg~~~-g~~~G~l~d~~~~~~~~~~~~~~~~~~~~GP~~~~~iG~vl~~~Gy 109 (564)
..+..-|.+.+++|.|..|...+.++..++..+ .++.|.+.||+| +|.++++|.++..+|.
T Consensus 20 ~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g------------------~r~~~~~~~~~~~~~~ 81 (485)
T TIGR00711 20 IVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFG------------------TRRLFLISTFAFTLGS 81 (485)
T ss_pred HHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhC------------------cHHHHHHHHHHHHHHH
Confidence 345667899999999999999888887777765 466787778764 9999999999999998
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHhhhcC-CCCcceeeeehhhhhhhHHHHHHHHHhhcCCCc
Q 008482 110 FLMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFP-TYSGTAVGIMKGFVGLSGAILIQVYQTFFNNKP 188 (564)
Q Consensus 110 ~~~~l~~~g~i~~~~~~~l~~~~~l~G~g~~~~~ta~l~t~~k~FP-~~RG~a~Gl~~a~~GLsa~i~s~i~~~~f~~~~ 188 (564)
.+. +.. ++++.+...-++.|.+.+...........+++| ++||++.|+......+++.+...+.....+...
T Consensus 82 ~~~-----~~~--~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~ 154 (485)
T TIGR00711 82 LLC-----GVA--PNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYH 154 (485)
T ss_pred HHH-----hCc--CCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcC
Confidence 874 333 356777788899999999999998888999997 689999999988888888776655544443322
Q ss_pred hhHH-HHHHHHHHHHhhhhheeeeeccCCCCcccccchhHHHHHHHHHHHHHHHHHHhhh-ccCchHHHHH-HHHHHHHH
Q 008482 189 TSYL-LLLALLASIDPLLLMWFVRICNTNEGNEKKHLNSFSLIALIVAAYLMVIIILEHI-FALPFLVRVL-TLILLLLL 265 (564)
Q Consensus 189 ~~~l-lfla~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~y~~~~~~~~~~-~~~~~~~~~~-~~~~~~~l 265 (564)
-... +..+....+..++...+++..+. .+++..+.........+.-.......+.. .....+..+. ......+.
T Consensus 155 w~~~f~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (485)
T TIGR00711 155 WRWIFLINVPIGIIVVVVAFFILPRDKP---AASENFDFLGLLLLSVGLGSLLYGLSEGPERGWFDSNEILILSITGLVA 231 (485)
T ss_pred ceehhhhhhHHHHHHHHHHHHHcCCccc---cccCCCcHHHHHHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHH
Confidence 1222 22222222222222222222111 11111111111100100000000000000 0000000000 00000000
Q ss_pred HhhhhhhhhhccCCCCCCCCcCccccCCCCCCCccchhhhccccCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCcHHH
Q 008482 266 LASPLYVAIRVQGSDSDRTSETSFCEEDELTDDPHEMHAEKMHVRQDPVGYHRLPSEPDVGTDTNDATTSLWGGDLDLLQ 345 (564)
Q Consensus 266 l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~ 345 (564)
+.... .+ +. ..+ +.....+
T Consensus 232 ~~~~~---~~---------------------------------------~~---~~~----------------~~~~~~~ 250 (485)
T TIGR00711 232 IIAFV---VW---------------------------------------EL---TDD----------------NPLVDLR 250 (485)
T ss_pred HHHHH---HH---------------------------------------HH---cCC----------------CCccCHH
Confidence 00000 00 00 000 0111246
Q ss_pred HhhcHHHHHHHHHHHhhhhchhheecchhHHHhh-cCCCccchhHHHHHHHHHHHHhhhhhhhhhhhhhhcccCchhHHH
Q 008482 346 AICTLEFWILSFAMACGMGSGLATVNNISQIGGS-LGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFM 424 (564)
Q Consensus 346 ~l~t~~Fwll~~~~~~~~g~gl~~i~n~~~i~~~-~g~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~R~~~l 424 (564)
.+++++||...+..++...........++.+.++ .|+++.+++.......+...+++++.|++.||+++ .+.+
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~------~~~~ 324 (485)
T TIGR00711 251 LFKYRNFTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDP------RKLV 324 (485)
T ss_pred HHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc------HHHH
Confidence 7889999988777666554444444556667765 68888888888889999999999999999999853 3344
Q ss_pred HHHHHHHHHHHHHHH-h-c--Cc-chHHHHHHHHHhhhccccchhHHHHHHhhccCchhhhhhhHhhhhhhHHHhhhhhh
Q 008482 425 VITLAAMSIGHLIIA-S-G--LP-GALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRV 499 (564)
Q Consensus 425 ~~~~~l~~i~~ll~~-~-~--~~-~~l~~~~~l~G~~~G~~~~~~P~ivse~FG~k~fg~nyg~~~~a~~iG~~lf~~~l 499 (564)
.+...+.+++.+++. . . .+ ..++...++.|++.|..+......+.+.++.++.|+..|+......+|.. +++.+
T Consensus 325 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~-ig~~i 403 (485)
T TIGR00711 325 TIGLILYAVGFYWRAFTFTPDTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGS-IGTAL 403 (485)
T ss_pred HHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHH-HHHHH
Confidence 555556666655543 1 1 11 23455677889999988877777788889999999999988766656653 35556
Q ss_pred hhhhhhcc
Q 008482 500 VGYIYDRE 507 (564)
Q Consensus 500 ~g~iyD~~ 507 (564)
.|.++|+.
T Consensus 404 ~g~~~~~~ 411 (485)
T TIGR00711 404 ITTILTNR 411 (485)
T ss_pred HHHHHHHH
Confidence 77777643
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.9e-15 Score=160.08 Aligned_cols=355 Identities=12% Similarity=-0.000 Sum_probs=209.9
Q ss_pred chhHHHHHHHHHHHHhcC-cccccccccHHHHhhcCCCcchhhHHHHhhhhhccc-cccchhhhccccCCCCCCCccchh
Q 008482 10 NTRWVSTVASIWIQCTSG-SLYTFSIYSPALKTTQHYDQTTLDTVSVFKDIGANT-GTLSGVLYTYSTSDHSSHHPRQQR 87 (564)
Q Consensus 10 ~~Rw~~l~a~~~i~l~~G-~~Y~fS~ys~~L~~~lg~sq~~~~~i~~a~~vg~~~-g~~~G~l~d~~~~~~~~~~~~~~~ 87 (564)
++.|+..+...+.+++.. ....+...-+++++++|+|+.+++.+.+...++..+ .++.|.+.||+|
T Consensus 9 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g------------ 76 (406)
T PRK15402 9 RQALLFPLCLVLFEFATYIANDMIQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIG------------ 76 (406)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC------------
Confidence 455665555555554322 122233344678999999999999777777777755 577888888765
Q ss_pred hhcccCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHhhhcCC-CCcceeeeeh
Q 008482 88 LTRLLGPWVVLLVGAIQCFAGYFLMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFPT-YSGTAVGIMK 166 (564)
Q Consensus 88 ~~~~~GP~~~~~iG~vl~~~Gy~~~~l~~~g~i~~~~~~~l~~~~~l~G~g~~~~~ta~l~t~~k~FP~-~RG~a~Gl~~ 166 (564)
+|.+++++.+...++..+.... ++++.+....++.|.+.+...........++||+ +|+.+.|+..
T Consensus 77 ------~r~~l~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 143 (406)
T PRK15402 77 ------RRPVMLAGVAFFILTCLAILLA-------QSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMA 143 (406)
T ss_pred ------ChHHHHHHHHHHHHHHHHHHHH-------ccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHH
Confidence 9999999999888888775332 2466666778888888888777777778899986 5667666665
Q ss_pred hhhhhhHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhhhhheeeeeccCCCCcccccchhHHHHHHHHHHHHHHHHHHhh
Q 008482 167 GFVGLSGAILIQVYQTFFNNKPTSYLLLLALLASIDPLLLMWFVRICNTNEGNEKKHLNSFSLIALIVAAYLMVIIILEH 246 (564)
Q Consensus 167 a~~GLsa~i~s~i~~~~f~~~~~~~llfla~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~y~~~~~~~~~ 246 (564)
...+++..+- |.+...+ .+..+.+ . .+... .....+.
T Consensus 144 ~~~~~~~~~g----------------------~~i~~~l----~~~~~w~-----~---~~~~~---~~~~~~~------ 180 (406)
T PRK15402 144 NVALLAPLLG----------------------PLVGAAL----IHVLPWR-----G---MFVLF---AALAALS------ 180 (406)
T ss_pred HHHHHHHHHH----------------------HHHHHHH----HHccCcc-----H---HHHHH---HHHHHHH------
Confidence 5555544332 3332211 1111111 0 11110 0000000
Q ss_pred hccCchHHHHHHHHHHHHHHhhhhhhhhhccCCCCCCCCcCccccCCCCCCCccchhhhccccCCCCCCCCCCCCCCCCC
Q 008482 247 IFALPFLVRVLTLILLLLLLASPLYVAIRVQGSDSDRTSETSFCEEDELTDDPHEMHAEKMHVRQDPVGYHRLPSEPDVG 326 (564)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~ll~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (564)
.+ .... ..+ ++ ++. + + + . .+.
T Consensus 181 ----------------~~----~~~~--~~~-~~-~~~-------------~-~-------------~-~-----~~~-- 201 (406)
T PRK15402 181 ----------------FF----GLWR--AMP-ET-AGR-------------V-G-------------E-K-----LSL-- 201 (406)
T ss_pred ----------------HH----HHHH--hCC-CC-Ccc-------------c-c-------------c-c-----ccH--
Confidence 00 0000 000 00 000 0 0 0 0 000
Q ss_pred CCCCCCCccCCCCCCcHHHHhhcHHHHHHHHHHHhhhhchhheecchhHHH-hhcCCCccchhHHHHHHHHHHHHhhhhh
Q 008482 327 TDTNDATTSLWGGDLDLLQAICTLEFWILSFAMACGMGSGLATVNNISQIG-GSLGYSSFETSSLISLWSIWNFLGRFGA 405 (564)
Q Consensus 327 ~~~~~~~~~~~~~~~t~~~~l~t~~Fwll~~~~~~~~g~gl~~i~n~~~i~-~~~g~~~~~aa~~Vsl~si~n~~GRl~~ 405 (564)
.+ ...+.++.++++++|.+.+.+.+..............+. +..|.++.+.+.......++..+|+++.
T Consensus 202 --------~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~ 271 (406)
T PRK15402 202 --------KE--LGRDYKLVLKNRRFVAGALALGLVSLPLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTL 271 (406)
T ss_pred --------HH--HHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 012347789999999988877666544334434445554 4468887666666666777889999999
Q ss_pred hhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHh-----c-CcchHHHHHHHHHhhhccccchhHHHHHHhhccCchhh
Q 008482 406 GYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIAS-----G-LPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGT 479 (564)
Q Consensus 406 G~lsD~l~~~~~~~R~~~l~~~~~l~~i~~ll~~~-----~-~~~~l~~~~~l~G~~~G~~~~~~P~ivse~FG~k~fg~ 479 (564)
|+++||.++| ..+.+..+++.++.+++.. . ....+.++.++.|++.|..+......+...- .++.|+
T Consensus 272 g~l~~r~~~~------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~~-~~~~g~ 344 (406)
T PRK15402 272 ARLTSRRPLR------SLIRMGLWPMVAGLLLAALATVISSHAYLWLTAGLSLYAFGIGLANAGLYRLTLFSS-DVSKGT 344 (406)
T ss_pred HHHHHhcCHH------HHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHhhhHHHHHhhhc-cccccH
Confidence 9999998543 2334444444444443321 1 1223455677888888887765544443332 367888
Q ss_pred hhhhHhhhhhhHHHhhhhhhhhhhhhcccC
Q 008482 480 IFNTITIANPVGSYIFSVRVVGYIYDREAS 509 (564)
Q Consensus 480 nyg~~~~a~~iG~~lf~~~l~g~iyD~~~~ 509 (564)
..+...+...+|.. +++.+.+.+||..+.
T Consensus 345 ~~~~~~~~~~~~~~-~g~~~~~~l~~~~~~ 373 (406)
T PRK15402 345 VSAAMGMLSMLIFT-VGIELSKHAYLGGGN 373 (406)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHhcccCCch
Confidence 88888777666664 567789999998775
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.7e-16 Score=168.74 Aligned_cols=377 Identities=13% Similarity=0.022 Sum_probs=224.2
Q ss_pred cccccHHHHhhcCCCcchhhHHHHhhhhhccc-cccchhhhccccCCCCCCCccchhhhcccCcHHHHHHHHHHHHHHHH
Q 008482 32 FSIYSPALKTTQHYDQTTLDTVSVFKDIGANT-GTLSGVLYTYSTSDHSSHHPRQQRLTRLLGPWVVLLVGAIQCFAGYF 110 (564)
Q Consensus 32 fS~ys~~L~~~lg~sq~~~~~i~~a~~vg~~~-g~~~G~l~d~~~~~~~~~~~~~~~~~~~~GP~~~~~iG~vl~~~Gy~ 110 (564)
...+-|.+.++++.|..|...+.....++... .++.|.+.||++ +|.++.++.++..+++.
T Consensus 36 ~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g------------------~~~~l~~~~~~~~~~~~ 97 (417)
T PRK10489 36 LGVAVPVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYD------------------RKKLILLARGTCGLGFI 97 (417)
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcC------------------CceEEEehHHHHHHHHH
Confidence 34456777778888999988887777777765 567888888765 88888888888888887
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHhhhcC-CCCcceeeeehhhhhhhHHHHHHHHHhhcCCCch
Q 008482 111 LMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFP-TYSGTAVGIMKGFVGLSGAILIQVYQTFFNNKPT 189 (564)
Q Consensus 111 ~~~l~~~g~i~~~~~~~l~~~~~l~G~g~~~~~ta~l~t~~k~FP-~~RG~a~Gl~~a~~GLsa~i~s~i~~~~f~~~~~ 189 (564)
+.... .....++++.+....++.|++.+....+......+++| ++|+++.|+.....+++..+-.
T Consensus 98 ~~~~~--~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~------------ 163 (417)
T PRK10489 98 GLALN--AFLPEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISP------------ 163 (417)
T ss_pred HHHHH--HHcCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHH------------
Confidence 65432 11112356666667777888888877777777889997 5689998887777777665533
Q ss_pred hHHHHHHHHHHHHhhhhheeeeeccCCCCcccccchhHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHhhh
Q 008482 190 SYLLLLALLASIDPLLLMWFVRICNTNEGNEKKHLNSFSLIALIVAAYLMVIIILEHIFALPFLVRVLTLILLLLLLASP 269 (564)
Q Consensus 190 ~~llfla~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~p 269 (564)
.+...+ +...+.+ ..+.. ..+.+++. .+++...
T Consensus 164 ----------~l~g~l----~~~~~~~--------~~~~~---~~~~~~~~---------------------~~~~~~l- 196 (417)
T PRK10489 164 ----------ALGGLL----IAAGGVA--------WNYGL---AAAGTFIT---------------------LLPLLRL- 196 (417)
T ss_pred ----------HHHHHH----HHHHhhH--------HHHHH---HHHHHHHH---------------------HHHHHhC-
Confidence 221111 0100111 00110 00000000 0000000
Q ss_pred hhhhhhccCCCCCCCCcCccccCCCCCCCccchhhhccccCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCcHHHHhhc
Q 008482 270 LYVAIRVQGSDSDRTSETSFCEEDELTDDPHEMHAEKMHVRQDPVGYHRLPSEPDVGTDTNDATTSLWGGDLDLLQAICT 349 (564)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~t 349 (564)
+ +. .+++ +++ + ++. +.....++..+++
T Consensus 197 -----~---~~-~~~~------------~~~-------------~-------~~~------------~~~~~~~~~~~~~ 223 (417)
T PRK10489 197 -----P---AL-PPPP------------QPR-------------E-------HPL------------RSLLAGFRFLLAS 223 (417)
T ss_pred -----C---CC-CCCC------------ccc-------------c-------cch------------HHHHHHHHHHHcC
Confidence 0 00 0000 000 0 000 0001134567788
Q ss_pred HHHHHHHHHHHhhhhchhheecchhHHHhh-cCCCccchhHHHHHHHHHHHHhhhhhhhhhhhhhhcccCchhHHHHHHH
Q 008482 350 LEFWILSFAMACGMGSGLATVNNISQIGGS-LGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITL 428 (564)
Q Consensus 350 ~~Fwll~~~~~~~~g~gl~~i~n~~~i~~~-~g~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~R~~~l~~~~ 428 (564)
+.+|.+++..++.... ..+....+.+.++ .|.++...+...++.++++.+|++++|+++||.+ +...+....
T Consensus 224 ~~~~~~~~~~~~~~~~-~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~------~~~~l~~~~ 296 (417)
T PRK10489 224 PVVGGIALLGGLLTMA-SAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSAR------PGLLMLLST 296 (417)
T ss_pred hHHHHHHHHHHHHHHH-HhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccC------cchHHHHHH
Confidence 8888766554443222 2333445666676 7888877888889999999999999999998742 222334444
Q ss_pred HHHHHHHHHHHhcC-cchHHHHHHHHHhhhccccchhHHHHHHhhccCchhhhhhhHhhhhhhHHHhhhhhhhhhhhhcc
Q 008482 429 AAMSIGHLIIASGL-PGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDRE 507 (564)
Q Consensus 429 ~l~~i~~ll~~~~~-~~~l~~~~~l~G~~~G~~~~~~P~ivse~FG~k~fg~nyg~~~~a~~iG~~lf~~~l~g~iyD~~ 507 (564)
.+.+++.+++.... ...+.+...+.|++.+.......+++.|.+..++.|+.+|+......+|.. .++.+.|.+.|..
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~-~g~~l~G~l~~~~ 375 (417)
T PRK10489 297 LGSFLAVGLFGLMPMWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDA-IGAALLGGLGAMM 375 (417)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHh-HHHHHHHHHHHHh
Confidence 45555554443222 223445566778777766666778899999888899999998766666664 5677899999986
Q ss_pred cCCCCccccCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhc
Q 008482 508 ASGEGNKCTGTHCFMLSFFIMGSATLCGSLAAFGLFLRTKRFYNEVILRRLLH 560 (564)
Q Consensus 508 ~~~~~~~C~G~~Cy~~af~i~~~l~v~a~vl~~~l~~r~~~~~~~~~~~~~~~ 560 (564)
+ +..+|.+.++...+..++......++|+.-+++.|++..|
T Consensus 376 g------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (417)
T PRK10489 376 T------------PVASASASGFGLLIIGVLLLLVLGELRRFRQTPPEVDASD 416 (417)
T ss_pred c------------hhhHHHHHHHHHHHHHHHHHHhcccccccccccccCCCCC
Confidence 6 4667765555444433344444445555444455554443
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.7e-16 Score=161.98 Aligned_cols=338 Identities=17% Similarity=0.164 Sum_probs=194.9
Q ss_pred cCcccccccccHH-HHhhcCCCcchhhHHHHhhhhhccc-cccchhhhccccCCCCCCCccchhhhcccCcHHHHHHHHH
Q 008482 26 SGSLYTFSIYSPA-LKTTQHYDQTTLDTVSVFKDIGANT-GTLSGVLYTYSTSDHSSHHPRQQRLTRLLGPWVVLLVGAI 103 (564)
Q Consensus 26 ~G~~Y~fS~ys~~-L~~~lg~sq~~~~~i~~a~~vg~~~-g~~~G~l~d~~~~~~~~~~~~~~~~~~~~GP~~~~~iG~v 103 (564)
...-|.++.+.|+ +++++|+|..|.+.+.....++..+ .++.|.+.||+| +|.+++++.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g------------------~r~~~~~~~~ 75 (366)
T TIGR00886 14 FSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFG------------------PRYTTTLSLL 75 (366)
T ss_pred HHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhC------------------chHHHHHHHH
Confidence 3345788999996 9999999999999888888888765 678888888875 9999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHhhhcC-CCCcceeeeehhhhhhhHHHHHHHHHh
Q 008482 104 QCFAGYFLMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFP-TYSGTAVGIMKGFVGLSGAILIQVYQT 182 (564)
Q Consensus 104 l~~~Gy~~~~l~~~g~i~~~~~~~l~~~~~l~G~g~~~~~ta~l~t~~k~FP-~~RG~a~Gl~~a~~GLsa~i~s~i~~~ 182 (564)
+..++..+....- .+++.+....++.|.+.+. +..+.....+++| ++||.+.++..+...++..+-..+.
T Consensus 76 ~~~i~~~~~~~~~------~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~-- 146 (366)
T TIGR00886 76 LLAIPCLWAGLAV------QSYSVLLLLRLFIGIAGGS-FASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVM-- 146 (366)
T ss_pred HHHHHHHHHHHHh------hhHHHHHHHHHHHHHhchh-hHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHH--
Confidence 9999988765431 1466666677777887554 4566778889997 5799999988766666655433211
Q ss_pred hcCCCchhHHHHHHHHHHHHhhhhheeeeeccCCCCcccccchhHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHH
Q 008482 183 FFNNKPTSYLLLLALLASIDPLLLMWFVRICNTNEGNEKKHLNSFSLIALIVAAYLMVIIILEHIFALPFLVRVLTLILL 262 (564)
Q Consensus 183 ~f~~~~~~~llfla~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (564)
|.+.. .+.+..+.. +...-. ..+.. ..++...+. .
T Consensus 147 ----------------~~l~~----~~~~~~~~~-~~~~w~-~~~~~---~~~~~~~~~--------------------~ 181 (366)
T TIGR00886 147 ----------------PPIIG----SLIFGAGLP-AHLAWG-WAFVI---VPAGILLLP--------------------A 181 (366)
T ss_pred ----------------HHHHH----HHHhccccc-cccccc-chhHH---HHHHHHHHH--------------------H
Confidence 11110 011111000 000000 01100 000000000 0
Q ss_pred HHHHhhhhhhhhhccCCCCCCCCcCccccCCCCCCCccchhhhccccCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCc
Q 008482 263 LLLLASPLYVAIRVQGSDSDRTSETSFCEEDELTDDPHEMHAEKMHVRQDPVGYHRLPSEPDVGTDTNDATTSLWGGDLD 342 (564)
Q Consensus 263 ~~ll~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t 342 (564)
++ . . ...+..+++ + .+ + ++ .+++++. ... + + ....+
T Consensus 182 ~~-~-~---~~~~~~~~~-~-~~-----~-------~~----------~~~~~~~----~~~-----~-----~-~~~~~ 217 (366)
T TIGR00886 182 LL-I-F---FVGADTPPG-K-PA-----T-------GK----------LSFKGAR----WSV-----G-----T-GALGD 217 (366)
T ss_pred HH-H-H---HhcccCCcc-c-cc-----c-------hh----------ccccccc----ccc-----c-----c-hhHHH
Confidence 00 0 0 000100000 0 00 0 00 0000000 000 0 0 00114
Q ss_pred HHHHhhcHHHHHHHHHHHhhhhchhheecchhHHHhh-cCCCccchhHHHHHHHHHHHHhhhhhhhhhhhhhhcccCchh
Q 008482 343 LLQAICTLEFWILSFAMACGMGSGLATVNNISQIGGS-LGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARP 421 (564)
Q Consensus 343 ~~~~l~t~~Fwll~~~~~~~~g~gl~~i~n~~~i~~~-~g~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~R~ 421 (564)
.++.++++++|.+.+.+++..+....+.+...++.++ .|.++.+++.+.++..+.+.+||+++|+++||+++|+ .
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~----~ 293 (366)
T TIGR00886 218 QLKVFRDRHTWILALLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGAR----K 293 (366)
T ss_pred HHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccch----h
Confidence 5788999999999998888777666666677777765 5888878888899999999999999999999997642 2
Q ss_pred HHHHHHHHHHHHHHHH--HHhcC---cch----HHHHHHHHHhhhccccchhHHHHHHhhccCchhhhhhhHhhhhhh
Q 008482 422 LFMVITLAAMSIGHLI--IASGL---PGA----LYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPV 490 (564)
Q Consensus 422 ~~l~~~~~l~~i~~ll--~~~~~---~~~----l~~~~~l~G~~~G~~~~~~P~ivse~FG~k~fg~nyg~~~~a~~i 490 (564)
.... +.+.+.+..+ +.... ... +++..+..|+++|..+ +++++.+ ++|.|+.+|++.....+
T Consensus 294 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~----~~~~~~~-~~~~g~~~g~~~~~~~~ 364 (366)
T TIGR00886 294 LLMS--FLGVAMGAFLVVLGLVSPLSLAVFIVLFVALFFFSGAGNGSTF----ALVPHIF-RRATGAVSGLVGAIGNL 364 (366)
T ss_pred HHHH--HHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhccccchhh----hcchhhc-hhhcccHHHHHHHhccC
Confidence 2222 2222222222 22221 111 2223344455555544 4555566 37899999987654433
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.4e-15 Score=157.94 Aligned_cols=329 Identities=14% Similarity=0.086 Sum_probs=204.8
Q ss_pred cccccccHHHHhhcCCCcchhhHHHHhhhhhccc-cccchhhhccccCCCCCCCccchhhhcccCcHHHHHHHHHHHHHH
Q 008482 30 YTFSIYSPALKTTQHYDQTTLDTVSVFKDIGANT-GTLSGVLYTYSTSDHSSHHPRQQRLTRLLGPWVVLLVGAIQCFAG 108 (564)
Q Consensus 30 Y~fS~ys~~L~~~lg~sq~~~~~i~~a~~vg~~~-g~~~G~l~d~~~~~~~~~~~~~~~~~~~~GP~~~~~iG~vl~~~G 108 (564)
..+...-|.+++++|+|.+|+..+..+..++..+ .++.|.+.||+| +|.++.++.++..++
T Consensus 22 ~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g------------------~r~~~~~~~~~~~~~ 83 (385)
T TIGR00710 22 DMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYG------------------RRPVLLLGLFIFALS 83 (385)
T ss_pred HHhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcC------------------ChHHHHHHHHHHHHH
Confidence 3444455888999999999999887777777755 567888888764 999999999999999
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHhhhcC-CCCcceeeeehhhhhhhHHHHHHHHHhhcCCC
Q 008482 109 YFLMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFP-TYSGTAVGIMKGFVGLSGAILIQVYQTFFNNK 187 (564)
Q Consensus 109 y~~~~l~~~g~i~~~~~~~l~~~~~l~G~g~~~~~ta~l~t~~k~FP-~~RG~a~Gl~~a~~GLsa~i~s~i~~~~f~~~ 187 (564)
..+.... ++++.++...++.|.+.+..+++......+++| ++||++.|+......++..+...+..
T Consensus 84 ~~~~~~~-------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~------ 150 (385)
T TIGR00710 84 SLGLALS-------NNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGG------ 150 (385)
T ss_pred HHHHHHH-------ccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence 8875432 246667777888999999999998888899998 56999999988888888766432221
Q ss_pred chhHHHHHHHHHHHHhhhhheeeeeccCCCCcccccchhHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHh
Q 008482 188 PTSYLLLLALLASIDPLLLMWFVRICNTNEGNEKKHLNSFSLIALIVAAYLMVIIILEHIFALPFLVRVLTLILLLLLLA 267 (564)
Q Consensus 188 ~~~~llfla~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 267 (564)
.+ .+..+.+ ..+.. .++..++ ..++
T Consensus 151 ----------------~l----~~~~~~~--------~~~~~----~~~~~~~---------------------~~~~-- 175 (385)
T TIGR00710 151 ----------------YI----LVWLSWH--------AIFAF----LSLAGIL---------------------LSAL-- 175 (385)
T ss_pred ----------------HH----HHHcCHH--------HHHHH----HHHHHHH---------------------HHHH--
Confidence 10 1111110 00110 0000000 0000
Q ss_pred hhhhhhhhccCCCCCCCCcCccccCCCCCCCccchhhhccccCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCcHHHHh
Q 008482 268 SPLYVAIRVQGSDSDRTSETSFCEEDELTDDPHEMHAEKMHVRQDPVGYHRLPSEPDVGTDTNDATTSLWGGDLDLLQAI 347 (564)
Q Consensus 268 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l 347 (564)
... .. ++. ++.+ ++ ++ ......+.++.+
T Consensus 176 ~~~----~~-~~~-~~~~----------------------------~~------~~------------~~~~~~~~~~~~ 203 (385)
T TIGR00710 176 IFF----IL-PET-LPYE----------------------------AR------IQ------------ISTYFETFLLLL 203 (385)
T ss_pred HHH----hC-CCC-CCCc----------------------------cc------CC------------HHHHHHHHHHHH
Confidence 000 00 000 0000 00 00 000012457888
Q ss_pred hcHHHHHHHHHHHhhhhchhheecchhHHHh-hcCCCccchhHHHHHHHHHHHHhhhhhhhhhhhhhhcccCchhHHHHH
Q 008482 348 CTLEFWILSFAMACGMGSGLATVNNISQIGG-SLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVI 426 (564)
Q Consensus 348 ~t~~Fwll~~~~~~~~g~gl~~i~n~~~i~~-~~g~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~R~~~l~~ 426 (564)
+++++|.+.+.+.+..+....+......+.+ ..|.++.+.+...+...+...+|+++.|+++||+++|+ .+..
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~------~~~~ 277 (385)
T TIGR00710 204 KSKMFWGYALIYGASFGGFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKS------LLRM 277 (385)
T ss_pred cCchhHHHHHHHHHHHHHHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHH
Confidence 9999998877766655544444444555555 57888888888888999999999999999999996432 2333
Q ss_pred HHHHHHHHHHHHH---h-c-Cc-chHHHHHHHHHhhhccccchhHHHHHHhhccCchhhhhhhHhhh-hhhHHHhhhhhh
Q 008482 427 TLAAMSIGHLIIA---S-G-LP-GALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIA-NPVGSYIFSVRV 499 (564)
Q Consensus 427 ~~~l~~i~~ll~~---~-~-~~-~~l~~~~~l~G~~~G~~~~~~P~ivse~FG~k~fg~nyg~~~~a-~~iG~~lf~~~l 499 (564)
...+..++.+++. . . .. ..++....+.|++.+..+...+..+.|.++ ++.|+..++.... ..+|+ +.++ +
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~-i~~~-~ 354 (385)
T TIGR00710 278 GLILFAVSAVLLEITAILGLGSWAMIIGPMMFVGIGNSMISSIAMAYALEDFP-HVAGTASALFGTLRLVLGA-IVGY-L 354 (385)
T ss_pred HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHH-HHHH-H
Confidence 3333333332221 1 1 11 123445677899999999999999999886 5677777766543 33444 3444 3
Q ss_pred hhhhhh
Q 008482 500 VGYIYD 505 (564)
Q Consensus 500 ~g~iyD 505 (564)
.|.+.|
T Consensus 355 ~~~~~~ 360 (385)
T TIGR00710 355 VSLIHG 360 (385)
T ss_pred HHhccc
Confidence 554433
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.1e-15 Score=162.56 Aligned_cols=380 Identities=13% Similarity=0.039 Sum_probs=226.6
Q ss_pred HHHhcCccccc-ccccHHHHhhcCCCcchhhHHHHhhhhhccc-cccchhhhccccCCCCCCCccchhhhcccCcHHHHH
Q 008482 22 IQCTSGSLYTF-SIYSPALKTTQHYDQTTLDTVSVFKDIGANT-GTLSGVLYTYSTSDHSSHHPRQQRLTRLLGPWVVLL 99 (564)
Q Consensus 22 i~l~~G~~Y~f-S~ys~~L~~~lg~sq~~~~~i~~a~~vg~~~-g~~~G~l~d~~~~~~~~~~~~~~~~~~~~GP~~~~~ 99 (564)
+-+.-|..+.. +...|++++++|+|.+|...+..+..+|..+ +++.|.+.||+| +|.++.
T Consensus 11 ~f~~~G~~~~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G------------------~r~~~~ 72 (410)
T TIGR00885 11 LFALWGFANDITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLS------------------YKAGIL 72 (410)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC------------------chHHHH
Confidence 33444444444 3667999999999999999888888888765 678888888875 999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHhhhcC-CCCcceeeeehhhhhhhHHHHHH
Q 008482 100 VGAIQCFAGYFLMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFP-TYSGTAVGIMKGFVGLSGAILIQ 178 (564)
Q Consensus 100 iG~vl~~~Gy~~~~l~~~g~i~~~~~~~l~~~~~l~G~g~~~~~ta~l~t~~k~FP-~~RG~a~Gl~~a~~GLsa~i~s~ 178 (564)
+|.++..+|..+++... .. .+++.++...++.|.|.+..+++.-....+..| ++|+...++..+++++++.+-..
T Consensus 73 ~g~~l~~~g~~l~~~~~--~~--~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~ 148 (410)
T TIGR00885 73 LGLFLYALGAFLFWPAA--EI--MNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMV 148 (410)
T ss_pred HHHHHHHHHHHHHHHHH--hh--ccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988754331 12 357777888899999999999987777777887 46899999999999999877654
Q ss_pred HHHhhcCCCchh-HHHHHHHHHHHHhhhhheeeeeccCCC--CcccccchhHHHHHHHHHHHHHHHHHHhhhccCchHHH
Q 008482 179 VYQTFFNNKPTS-YLLLLALLASIDPLLLMWFVRICNTNE--GNEKKHLNSFSLIALIVAAYLMVIIILEHIFALPFLVR 255 (564)
Q Consensus 179 i~~~~f~~~~~~-~llfla~~p~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~~i~~~~y~~~~~~~~~~~~~~~~~~ 255 (564)
+....+..+... -.. .....+... ...+..........+..++..+.
T Consensus 149 i~~~l~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~--------------- 198 (410)
T TIGR00885 149 VAQQLILSNLPHQSQD---------------VLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLA--------------- 198 (410)
T ss_pred HHHHHHhcCCccchhh---------------hhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------
Confidence 443222110000 000 000000000 00000000011100011100000
Q ss_pred HHHHHHHHHHHhhhhhhhhhccCCCCCCCCcCccccCCCCCCCccchhhhccccCCCCCCCCCCCCCCCCCCCCCCCCcc
Q 008482 256 VLTLILLLLLLASPLYVAIRVQGSDSDRTSETSFCEEDELTDDPHEMHAEKMHVRQDPVGYHRLPSEPDVGTDTNDATTS 335 (564)
Q Consensus 256 ~~~~~~~~~ll~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (564)
+.++. . -.+.| +. + + + +++ ++
T Consensus 199 ------~~~~~-~----~~~~p-~~-~-~---------------~-------------~~~-----~~------------ 219 (410)
T TIGR00885 199 ------VALLI-M----LTKMP-AL-N-H---------------S-------------DAK-----QI------------ 219 (410)
T ss_pred ------HHHHH-H----HhcCC-CC-C-c---------------c-------------ccc-----cc------------
Confidence 00000 0 00110 00 0 0 0 000 00
Q ss_pred CCCCCCcHHHHhhcHHHHHHHHHHHhhhhchhheecchhHHHhhcCC--CccchhHHHHHHHHHHHHhhhhhhhhhhhhh
Q 008482 336 LWGGDLDLLQAICTLEFWILSFAMACGMGSGLATVNNISQIGGSLGY--SSFETSSLISLWSIWNFLGRFGAGYVSDYFL 413 (564)
Q Consensus 336 ~~~~~~t~~~~l~t~~Fwll~~~~~~~~g~gl~~i~n~~~i~~~~g~--~~~~aa~~Vsl~si~n~~GRl~~G~lsD~l~ 413 (564)
+ ...+.++.+|++.+|+..+..++-.+.-.++.+++.+..++.+. +...++...+.+...-.+||+++|++.||+.
T Consensus 220 ~--~~~~~~~~~~~~~~~~~~l~~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~ 297 (410)
T TIGR00885 220 S--FSASLSRLARIRHYREGVIAQFFYVGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYLA 297 (410)
T ss_pred c--chhhHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 0 01134678899999998888888777776777888888877543 3333455677777778999999999999995
Q ss_pred hcccCchhHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHhhhccccchhHHHHHHhhccCchhhhhhhHhhhhhhHHH
Q 008482 414 HVKEWARPLFMVITLAAMSIGHLIIASGLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSY 493 (564)
Q Consensus 414 ~~~~~~R~~~l~~~~~l~~i~~ll~~~~~~~~l~~~~~l~G~~~G~~~~~~P~ivse~FG~k~fg~nyg~~~~a~~iG~~ 493 (564)
+ | +.+.+...+..+.+++...........+.+++|++.+.+|.+.-++..+.+|.+.-..--++++ ..+|.-
T Consensus 298 ~-----~-~~l~i~~~~~~~~~ll~~~~~~~~~~~~l~~~glf~s~~fp~i~sl~~~~~g~~~~~~s~~l~~--~~~Gga 369 (410)
T TIGR00885 298 A-----H-KVLMAYAIIGMALCLGSIFAGGHVGLYCLTLCSAFMSLMFPTIYGIALKGLGQDTKYGAAGLVM--AIIGGG 369 (410)
T ss_pred H-----H-HHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHH--HHhccc
Confidence 3 2 2344444444444444433222234456678899999999888888888888553222223332 236664
Q ss_pred hhhhhhhhhhhhcccCCCCccccCCcccHHHHHHHH
Q 008482 494 IFSVRVVGYIYDREASGEGNKCTGTHCFMLSFFIMG 529 (564)
Q Consensus 494 lf~~~l~g~iyD~~~~~~~~~C~G~~Cy~~af~i~~ 529 (564)
..|++.|.+.|..+... .+-++.+|++..
T Consensus 370 -~~p~l~G~~~d~~~~~~------~~~~~~~~~~~~ 398 (410)
T TIGR00885 370 -IVPPLQGFIIDMKEIAA------APAVNTSFILPL 398 (410)
T ss_pred -hHHHHHHHHHHHhcccc------cCccchHHHHHH
Confidence 34568999999642100 001788888654
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.7e-15 Score=160.34 Aligned_cols=182 Identities=10% Similarity=-0.088 Sum_probs=110.9
Q ss_pred cHHHHhhcHHHHHHHHHHHhh-hhchhheecchhHHHh-hcCCCccchhHHHHHHHHHHHHhhhhhhhhhhhhhhcccCc
Q 008482 342 DLLQAICTLEFWILSFAMACG-MGSGLATVNNISQIGG-SLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWA 419 (564)
Q Consensus 342 t~~~~l~t~~Fwll~~~~~~~-~g~gl~~i~n~~~i~~-~~g~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~ 419 (564)
++++.++++++|++.+.+.+. ......+.+-++++.+ ..|++..+.....++..+...++..+.|+++||+++|+
T Consensus 234 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~--- 310 (432)
T PRK10406 234 SLKGLWRNRRAFIMVLGFTAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRT--- 310 (432)
T ss_pred cHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchH---
Confidence 468889999999887766654 2223334455667665 46888777777788888888999999999999997542
Q ss_pred hhHHHHHHHHHHHHHH---HHHHh-cCcchHHH-HHHHHHhhhccccchhHHHHHHhhccCchhhhhhhHhh-hhhhHHH
Q 008482 420 RPLFMVITLAAMSIGH---LIIAS-GLPGALYA-GSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITI-ANPVGSY 493 (564)
Q Consensus 420 R~~~l~~~~~l~~i~~---ll~~~-~~~~~l~~-~~~l~G~~~G~~~~~~P~ivse~FG~k~fg~nyg~~~~-a~~iG~~ 493 (564)
. +....++.++.. +.... .......+ ...+.+++.|...+..+.+++|.|.+|+-|+-+|+.+. +..+...
T Consensus 311 --~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~ 387 (432)
T PRK10406 311 --S-MLCFGSLAALFTVPILSALQNVSSPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGG 387 (432)
T ss_pred --H-HHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHh
Confidence 1 222222221111 11111 11111111 12223344444556778889999999999999999873 3332221
Q ss_pred hhhhhhhhhhhhcccCCCCccccCCcccHHHHHHHHHHHHHHHHHHHHH
Q 008482 494 IFSVRVVGYIYDREASGEGNKCTGTHCFMLSFFIMGSATLCGSLAAFGL 542 (564)
Q Consensus 494 lf~~~l~g~iyD~~~~~~~~~C~G~~Cy~~af~i~~~l~v~a~vl~~~l 542 (564)
+.+.+.+ +.|.+++ |...++..++.++++.+..+++
T Consensus 388 -~~p~~~~-~l~~~g~-----------~~~~~~~~~~~~~i~~~~~~~l 423 (432)
T PRK10406 388 -SAEYVAL-SLKSIGM-----------ETAFFWYVTLMAVVAFLVSLML 423 (432)
T ss_pred -HHHHHHH-HHHHhCC-----------CcHHHHHHHHHHHHHHHHHHHh
Confidence 2444455 4576665 5667777777777776555443
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.6e-15 Score=165.14 Aligned_cols=143 Identities=15% Similarity=0.108 Sum_probs=101.2
Q ss_pred HHHHHHHHHHHhcCccccccccc---HHHHhhc--------CCCcchhhHHHHhhhhhccc-cccchhhhccccCCCCCC
Q 008482 14 VSTVASIWIQCTSGSLYTFSIYS---PALKTTQ--------HYDQTTLDTVSVFKDIGANT-GTLSGVLYTYSTSDHSSH 81 (564)
Q Consensus 14 ~~l~a~~~i~l~~G~~Y~fS~ys---~~L~~~l--------g~sq~~~~~i~~a~~vg~~~-g~~~G~l~d~~~~~~~~~ 81 (564)
+..+.+.+..+..| |..++++ +.+++.+ +++..+...+.....+|..+ .++.|.+.||+|
T Consensus 12 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~G------ 83 (479)
T PRK10077 12 SITLVATLGGLLFG--YDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFG------ 83 (479)
T ss_pred HHHHHHHHHHHhcC--cccceehHhHHHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhc------
Confidence 33333334444433 3344444 4466666 88889998888888888866 578888888875
Q ss_pred CccchhhhcccCcHHHHHHHHHHHHHHHHHHHHHHhc---CC-CC-CCHHHHHHHHHHHhhhhhhhhHHHHHHHhhhcC-
Q 008482 82 HPRQQRLTRLLGPWVVLLVGAIQCFAGYFLMWASVVG---LI-PR-PPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFP- 155 (564)
Q Consensus 82 ~~~~~~~~~~~GP~~~~~iG~vl~~~Gy~~~~l~~~g---~i-~~-~~~~~l~~~~~l~G~g~~~~~ta~l~t~~k~FP- 155 (564)
+|.+++++.+++.++.++..+..-. .. +. ..++.+..+-++.|.+.+..+..+.....+++|
T Consensus 84 ------------rr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~ 151 (479)
T PRK10077 84 ------------RRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPA 151 (479)
T ss_pred ------------cHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCCh
Confidence 9999999999999888775542110 01 10 123455677899999999999999999999998
Q ss_pred CCCcceeeeehhhhhhhHHHH
Q 008482 156 TYSGTAVGIMKGFVGLSGAIL 176 (564)
Q Consensus 156 ~~RG~a~Gl~~a~~GLsa~i~ 176 (564)
++||++.|+...+..++..+-
T Consensus 152 ~~rg~~~~~~~~~~~~G~~~~ 172 (479)
T PRK10077 152 HIRGKLVSFNQFAIIFGQLVV 172 (479)
T ss_pred hhhhHHHHHHHHHHHHHHHHH
Confidence 569999999888777776553
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.6e-15 Score=158.43 Aligned_cols=180 Identities=12% Similarity=0.063 Sum_probs=117.5
Q ss_pred HHHhhcHHHHHHHHHHHhhhhchh-heecchhHHHhhcCCCccc----hhHHHHHHHHHHHHhhhhhhhhhhhhhhcccC
Q 008482 344 LQAICTLEFWILSFAMACGMGSGL-ATVNNISQIGGSLGYSSFE----TSSLISLWSIWNFLGRFGAGYVSDYFLHVKEW 418 (564)
Q Consensus 344 ~~~l~t~~Fwll~~~~~~~~g~gl-~~i~n~~~i~~~~g~~~~~----aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~ 418 (564)
.+.++++++|...+...+...... .+........++.+.+..+ .+...++..+.+.++++.+|+++||+++|
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~--- 288 (408)
T PRK09874 212 VTSLKNPKLVLSLFVTTLIIQVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPE--- 288 (408)
T ss_pred HHhCcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc---
Confidence 456777887764443333222222 2223334444554333222 23445566788889999999999999643
Q ss_pred chhHHHHHHHHHHHHHHHHHHh-cCcchHHHHHHHHHhhhccccchhHHHHHHhhccCchhhhhhhHhhhhhhHHHhhhh
Q 008482 419 ARPLFMVITLAAMSIGHLIIAS-GLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSV 497 (564)
Q Consensus 419 ~R~~~l~~~~~l~~i~~ll~~~-~~~~~l~~~~~l~G~~~G~~~~~~P~ivse~FG~k~fg~nyg~~~~a~~iG~~lf~~ 497 (564)
..+.....+..++.+++.. ..+..+++..++.|++.|.........+.+....++.|+.+++......+|.. +++
T Consensus 289 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~-~gp 364 (408)
T PRK09874 289 ---KILITALIFSVLLLIPMSFVQTPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNV-TGP 364 (408)
T ss_pred ---hhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHH-hhH
Confidence 2233344444444433332 23334556677889999999888888888888888999999987766666664 566
Q ss_pred hhhhhhhhcccCCCCccccCCcccHHHHHHHHHHHHHHHHHHHHH
Q 008482 498 RVVGYIYDREASGEGNKCTGTHCFMLSFFIMGSATLCGSLAAFGL 542 (564)
Q Consensus 498 ~l~g~iyD~~~~~~~~~C~G~~Cy~~af~i~~~l~v~a~vl~~~l 542 (564)
.+.|.+.|..+ |+.+|.+.+++.+++.++..+.
T Consensus 365 ~~~G~l~~~~g------------~~~~f~~~~~~~l~~~~~~~~~ 397 (408)
T PRK09874 365 LMGAAISANYG------------FRAVFLVTAGVVLFNAVYSWNS 397 (408)
T ss_pred HHHHHHHhhcc------------hhHHHHHHHHHHHHHHHHHHHH
Confidence 67899988755 7999999998888887666543
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.3e-16 Score=172.12 Aligned_cols=383 Identities=15% Similarity=0.100 Sum_probs=224.6
Q ss_pred CcccccccccHHHHhhcCCC---cchhhHHHHhhhhhccc-cccchhhhccccCCCCCCCccchhhhcccCcHHHHHHHH
Q 008482 27 GSLYTFSIYSPALKTTQHYD---QTTLDTVSVFKDIGANT-GTLSGVLYTYSTSDHSSHHPRQQRLTRLLGPWVVLLVGA 102 (564)
Q Consensus 27 G~~Y~fS~ys~~L~~~lg~s---q~~~~~i~~a~~vg~~~-g~~~G~l~d~~~~~~~~~~~~~~~~~~~~GP~~~~~iG~ 102 (564)
|-.|.++.+.+++++++|++ ..+...+.+...+|..+ .++.|.+.||+| +|++++++.
T Consensus 103 ~~~~~~~~~~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~G------------------rr~~~~~~~ 164 (505)
T TIGR00898 103 GWEYSYDTFSSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFG------------------RKKVLLLST 164 (505)
T ss_pred CcEecCCcccccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhcc------------------chHHHHHHH
Confidence 45677778999999999999 88888888888888876 567888888765 999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHhhhcC-CCCcceeeeehhhhhhhHHHHHHHHH
Q 008482 103 IQCFAGYFLMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFP-TYSGTAVGIMKGFVGLSGAILIQVYQ 181 (564)
Q Consensus 103 vl~~~Gy~~~~l~~~g~i~~~~~~~l~~~~~l~G~g~~~~~ta~l~t~~k~FP-~~RG~a~Gl~~a~~GLsa~i~s~i~~ 181 (564)
++..++.++.. .. ++++.+.++-++.|++.+..+........+++| ++||.+.++...++++|..+...+..
T Consensus 165 ~~~~i~~~~~~-----~~--~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~ 237 (505)
T TIGR00898 165 LVTAVSGVLTA-----FS--PNYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAY 237 (505)
T ss_pred HHHHHHHHHHH-----Hc--ccHHHHHHHHHHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99888887743 22 357778888889999999999999999999998 46999998887777777655432211
Q ss_pred hhcCCCchhHHHHHHHHHHHHhhhhheeeeeccCCCCcccccchhHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHH
Q 008482 182 TFFNNKPTSYLLLLALLASIDPLLLMWFVRICNTNEGNEKKHLNSFSLIALIVAAYLMVIIILEHIFALPFLVRVLTLIL 261 (564)
Q Consensus 182 ~~f~~~~~~~llfla~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~y~~~~~~~~~~~~~~~~~~~~~~~~ 261 (564)
+.. +-.. ++++...|.+..++..++++
T Consensus 238 -~~~-~wr~-~~~~~~i~~~~~~~~~~~~~-------------------------------------------------- 264 (505)
T TIGR00898 238 -FIP-DWRW-LQLAVSLPTFLFFLLSWFVP-------------------------------------------------- 264 (505)
T ss_pred -Hhh-HHHH-HHHHHHHHHHHHHHHHHhcC--------------------------------------------------
Confidence 110 0001 11111111111111111110
Q ss_pred HHHHHhhhhhhhhhccCCCCCCCCcCccccCCCCCCCccchhhhccccCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCC
Q 008482 262 LLLLLASPLYVAIRVQGSDSDRTSETSFCEEDELTDDPHEMHAEKMHVRQDPVGYHRLPSEPDVGTDTNDATTSLWGGDL 341 (564)
Q Consensus 262 ~~~ll~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (564)
..++ +...+ .+.++.+.... +..+......+++... .+.. ++.. ......
T Consensus 265 --------------esp~-~l~~~-~~~~~a~~~l~-----~~~~~~~~~~~~~~~~--~~~~------~~~~-~~~~~~ 314 (505)
T TIGR00898 265 --------------ESPR-WLISQ-GRIEEALKILQ-----RIAKINGKKLPAEVLS--LSLE------KDLS-SSKKQY 314 (505)
T ss_pred --------------CChH-HHHHC-CCHHHHHHHHH-----HHHHHcCCCCCHHHHh--hhhh------hhhh-hccCCC
Confidence 0000 00000 00000000000 0000000000000000 0000 0000 001134
Q ss_pred cHHHHhhcHHHHHHHHHHHhhhhchhheecchhHHHhhcCCCccchhHHHHHHHHHHHHhhhhhhhhhhhhhhcccCchh
Q 008482 342 DLLQAICTLEFWILSFAMACGMGSGLATVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARP 421 (564)
Q Consensus 342 t~~~~l~t~~Fwll~~~~~~~~g~gl~~i~n~~~i~~~~g~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~R~ 421 (564)
+.+++++++.+|...+.+.+...........+....+.++.+. .....+.++....|+++.+++.||++| .
T Consensus 315 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~i~~~~~~~~l~dr~gr------r 385 (505)
T TIGR00898 315 SFLDLFRTPNLRKTTLCLMMLWFTTAFSYYGLVLDLGNLGGNI---YLDLFISGLVELPAKLITLLLIDRLGR------R 385 (505)
T ss_pred cHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCh---HHHHHHHHHHHHHHHHHHHHHHHHhCC------H
Confidence 7789999999998877766554433222222222223344432 233446677888999999999999953 3
Q ss_pred HHHHHHHHHHHHHHHHHHh-cCc--chHHHHHHHHHhhhccccchhHHHHHHhhccCchhhhhhhHhhhhhhHHHhhhhh
Q 008482 422 LFMVITLAAMSIGHLIIAS-GLP--GALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVR 498 (564)
Q Consensus 422 ~~l~~~~~l~~i~~ll~~~-~~~--~~l~~~~~l~G~~~G~~~~~~P~ivse~FG~k~fg~nyg~~~~a~~iG~~lf~~~ 498 (564)
..+.+..++.+++++++.. ... .......++.+++.++.+.+...+++|.|..++-++-.|+......+|.. +++.
T Consensus 386 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~-i~p~ 464 (505)
T TIGR00898 386 YTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSI-ISPF 464 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHH-HHhH
Confidence 4455555666666554432 222 22344556677888888889999999999999999999988877777775 5666
Q ss_pred hhhhhhhcccCCCCccccCCcccHHHHHHHHHHHHHHHHHHHH
Q 008482 499 VVGYIYDREASGEGNKCTGTHCFMLSFFIMGSATLCGSLAAFG 541 (564)
Q Consensus 499 l~g~iyD~~~~~~~~~C~G~~Cy~~af~i~~~l~v~a~vl~~~ 541 (564)
+.+ .+..+ +..+|.+.+++++++.++.++
T Consensus 465 i~~--~~~~~------------~~~~~~~~~~~~~~~~~~~~~ 493 (505)
T TIGR00898 465 LVY--LGEKW------------LFLPLVLFGGLALLAGILTLF 493 (505)
T ss_pred HHH--HHHHH------------HhhHHHHHHHHHHHHHHHHHc
Confidence 666 33322 356677777777666655544
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.5e-15 Score=157.37 Aligned_cols=334 Identities=11% Similarity=0.044 Sum_probs=216.0
Q ss_pred HHhhcCCCcchhhHHHHhhhhhccc-cccchhhhccccCCCCCCCccchhhhcccCcHHHHHHHHHHHHHHHHHHHHHHh
Q 008482 39 LKTTQHYDQTTLDTVSVFKDIGANT-GTLSGVLYTYSTSDHSSHHPRQQRLTRLLGPWVVLLVGAIQCFAGYFLMWASVV 117 (564)
Q Consensus 39 L~~~lg~sq~~~~~i~~a~~vg~~~-g~~~G~l~d~~~~~~~~~~~~~~~~~~~~GP~~~~~iG~vl~~~Gy~~~~l~~~ 117 (564)
...+++.|..|+..+..+..++..+ .++.|.+.||+| +|.++.++.++..++..+......
T Consensus 25 ~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g------------------~r~~~~~~~~~~~~~~~~~~~~~~ 86 (365)
T TIGR00900 25 YVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYD------------------RKKVMIGADLIRAVLVAVLPFVAL 86 (365)
T ss_pred HHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhc------------------hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455788999999887777777765 678888888875 999999999988888877655422
Q ss_pred cCCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHhhhcC-CCCcceeeeehhhhhhhHHHHHHHHHhhcCCCchhHHHHHH
Q 008482 118 GLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFP-TYSGTAVGIMKGFVGLSGAILIQVYQTFFNNKPTSYLLLLA 196 (564)
Q Consensus 118 g~i~~~~~~~l~~~~~l~G~g~~~~~ta~l~t~~k~FP-~~RG~a~Gl~~a~~GLsa~i~s~i~~~~f~~~~~~~llfla 196 (564)
.+..+++.++...++.|.+.+....+......+++| ++|+++.|+.....+++..+-.
T Consensus 87 --~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~------------------- 145 (365)
T TIGR00900 87 --LGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGP------------------- 145 (365)
T ss_pred --cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHH-------------------
Confidence 112357777778888899999998888888899998 5799999999998888886543
Q ss_pred HHHHHHhhhhheeeeeccCCCCcccccchhHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHhhhhhhhhhc
Q 008482 197 LLASIDPLLLMWFVRICNTNEGNEKKHLNSFSLIALIVAAYLMVIIILEHIFALPFLVRVLTLILLLLLLASPLYVAIRV 276 (564)
Q Consensus 197 ~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~p~~~~~~~ 276 (564)
.+...+ .+..+.+ ..+.. ......+ ..+++ ...+.
T Consensus 146 ---~l~~~l----~~~~g~~--------~~~~~---~~~~~~~----------------------~~~~~-----~~~~~ 180 (365)
T TIGR00900 146 ---GIGGLM----YATLGIK--------WAIWV---DAVGFAI----------------------SALLI-----VSVRI 180 (365)
T ss_pred ---HHHHHH----HHHhhHH--------HHHHH---HHHHHHH----------------------HHHHH-----Hhccc
Confidence 221111 1110000 00000 0000000 00000 00011
Q ss_pred cCCCCCCCCcCccccCCCCCCCccchhhhccccCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCcHHHHhhcHHHHHHH
Q 008482 277 QGSDSDRTSETSFCEEDELTDDPHEMHAEKMHVRQDPVGYHRLPSEPDVGTDTNDATTSLWGGDLDLLQAICTLEFWILS 356 (564)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~t~~Fwll~ 356 (564)
+ ++ ++.+ +++ .++ +. .++.....++.++++.+|.+.
T Consensus 181 ~-~~-~~~~------------~~~-------------~~~-----~~------------~~~~~~~~~~~~~~~~~~~~~ 216 (365)
T TIGR00900 181 P-EL-AASE------------IQA-------------LSN-----AV------------LRDTREGIKFVLKNPLLRTLL 216 (365)
T ss_pred c-cC-CCcc------------ccc-------------cch-----hH------------HHHHHhHHHHHHcCcHHHHHH
Confidence 0 00 0000 000 000 00 000012356788999999888
Q ss_pred HHHHhhhhchhheecchhHH-Hhh-cCCCccchhHHHHHHHHHHHHhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHH
Q 008482 357 FAMACGMGSGLATVNNISQI-GGS-LGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIG 434 (564)
Q Consensus 357 ~~~~~~~g~gl~~i~n~~~i-~~~-~g~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~R~~~l~~~~~l~~i~ 434 (564)
+..++..........+..+. .++ .|.++.+.+...+..++.+.+++++.|+++||.++ ...+.....+.+++
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~------~~~~~~~~~~~~~~ 290 (365)
T TIGR00900 217 LLALLFNLVFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKR------MALMTGAIFVIGLA 290 (365)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhch------hHHHHHHHHHHHHH
Confidence 87777665555554344444 444 68888788888889999999999999999999853 33344444444554
Q ss_pred HHHHHhcC--cchHHHHHHHHHhhhccccchhHHHHHHhhccCchhhhhhhHhhhhhhHHHhhhhhhhhhhhhcc
Q 008482 435 HLIIASGL--PGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDRE 507 (564)
Q Consensus 435 ~ll~~~~~--~~~l~~~~~l~G~~~G~~~~~~P~ivse~FG~k~fg~nyg~~~~a~~iG~~lf~~~l~g~iyD~~ 507 (564)
.+++.... ...+++..++.|+++|........++.|.+..++.|+.+|+......+|.. +++.+.|.++|..
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~g~~~~g~l~~~~ 364 (365)
T TIGR00900 291 ILVVGLTPPNFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWP-LGLILAGPLADHL 364 (365)
T ss_pred HHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHc
Confidence 44433222 224566778899999999999999999999999999999998877777764 5677899999874
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=5.5e-15 Score=162.68 Aligned_cols=182 Identities=12% Similarity=0.158 Sum_probs=107.5
Q ss_pred cHHHHhhc-HHHHHHHHHHHh-hhhchhheecchhHHHh-hcCCCccchhHHHHHHHHHHHHhhhhhhhhhhhhhhcccC
Q 008482 342 DLLQAICT-LEFWILSFAMAC-GMGSGLATVNNISQIGG-SLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEW 418 (564)
Q Consensus 342 t~~~~l~t-~~Fwll~~~~~~-~~g~gl~~i~n~~~i~~-~~g~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~ 418 (564)
++++.+++ +..|++.+...+ ....-..+...++++.+ ..|++........+...+...+|++++|+++||++||
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr--- 316 (490)
T PRK10642 240 SFKEIATKHWRSLLTCIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRR--- 316 (490)
T ss_pred CHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH---
Confidence 45666653 333433322222 22222344455677775 4688776666677778888999999999999999653
Q ss_pred chhHHHHHHHHH-HHHHHH--HHHhc-CcchHHHHHHHHHhhhccccchhHHHHHHhhccCchhhhhhhHh-hhhhhHHH
Q 008482 419 ARPLFMVITLAA-MSIGHL--IIASG-LPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTIT-IANPVGSY 493 (564)
Q Consensus 419 ~R~~~l~~~~~l-~~i~~l--l~~~~-~~~~l~~~~~l~G~~~G~~~~~~P~ivse~FG~k~fg~nyg~~~-~a~~iG~~ 493 (564)
+.+....++ ...+.. ..... ....++++.++.|+++|...+..+.++.|+|..+.-|+-.|+.+ ++... +.
T Consensus 317 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~-g~ 392 (490)
T PRK10642 317 ---PFVILGSVALFVLAIPAFILINSNVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLV-AG 392 (490)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHH-HH
Confidence 223332222 222221 11122 22235556677888888888999999999999988887777643 33323 22
Q ss_pred hhhhhhhhhhhhcccCCCCccccCCcccHHHHHHHHHHHHHHHHHHHHH
Q 008482 494 IFSVRVVGYIYDREASGEGNKCTGTHCFMLSFFIMGSATLCGSLAAFGL 542 (564)
Q Consensus 494 lf~~~l~g~iyD~~~~~~~~~C~G~~Cy~~af~i~~~l~v~a~vl~~~l 542 (564)
+++.+.|++.|..++ ....+.+..+.++++++..+++
T Consensus 393 -~~p~i~g~l~~~~~~-----------~~~~~~~~~~~~~i~~~~~~~~ 429 (490)
T PRK10642 393 -LTPTLAAWLVESTQN-----------LMMPAYYLMVVAVIGLITGVTM 429 (490)
T ss_pred -HHHHHHHHHHHHhCC-----------chHHHHHHHHHHHHHHHHHHHh
Confidence 345567888886554 2444444455566665554443
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.5e-14 Score=156.91 Aligned_cols=182 Identities=10% Similarity=0.007 Sum_probs=113.2
Q ss_pred HHHhhcHHHHHHHHHHHhh-hhchhheecchhHHH-hhcCCCccchhHHHHHHHHHHHHhhhhhhhhhhhhhhcccCchh
Q 008482 344 LQAICTLEFWILSFAMACG-MGSGLATVNNISQIG-GSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARP 421 (564)
Q Consensus 344 ~~~l~t~~Fwll~~~~~~~-~g~gl~~i~n~~~i~-~~~g~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~R~ 421 (564)
++.++++++|.+.+..... ......+.+...+.. +..|+++........+.++.++++.+++|+++||++||+
T Consensus 243 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~----- 317 (438)
T PRK09952 243 EALLRHPGAFLKIIALRLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRR----- 317 (438)
T ss_pred HHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchH-----
Confidence 3467888888775533322 222233334444444 346777654444455667788899999999999997542
Q ss_pred HHHHHHHHHHHHHHHHH--Hh-c-Ccc-hHHHHHHHHHhhhccccchhHHHHHHhhccCchhhhhhhHh-hhhhhHHHhh
Q 008482 422 LFMVITLAAMSIGHLII--AS-G-LPG-ALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTIT-IANPVGSYIF 495 (564)
Q Consensus 422 ~~l~~~~~l~~i~~ll~--~~-~-~~~-~l~~~~~l~G~~~G~~~~~~P~ivse~FG~k~fg~nyg~~~-~a~~iG~~lf 495 (564)
.+....++..++.+.+ .. . ... .+.+..++.++++|..++..+++++|.|+.|+-++-.|+.+ ++..+|+. +
T Consensus 318 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~-~ 395 (438)
T PRK09952 318 -VYITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGG-F 395 (438)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHH-H
Confidence 2223333333322211 11 1 111 22334566688999889999999999999988777777654 44445553 4
Q ss_pred hhhhhhhhhhcccCCCCccccCCcccHHHHHHHHHHHHHHHHHHHHH
Q 008482 496 SVRVVGYIYDREASGEGNKCTGTHCFMLSFFIMGSATLCGSLAAFGL 542 (564)
Q Consensus 496 ~~~l~g~iyD~~~~~~~~~C~G~~Cy~~af~i~~~l~v~a~vl~~~l 542 (564)
++.+.|.++|.++.. |...|....+.++++.+..+.+
T Consensus 396 ~p~i~g~l~~~~~~~----------~~~~~~~~~~~~~i~~v~~~~~ 432 (438)
T PRK09952 396 TPFIAAALVTYFGGS----------WHSVAIYLLAGCLISAMTALLM 432 (438)
T ss_pred HHHHHHHHHHhcCCC----------chHHHHHHHHHHHHHHHHHHHc
Confidence 666799999976431 7888888887788877665543
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.68 E-value=5.4e-15 Score=157.23 Aligned_cols=351 Identities=12% Similarity=0.039 Sum_probs=212.2
Q ss_pred cccccccHHHHhhcCCCcchhhHHHHhhhhhccc-cccchhhhccccCCCCCCCccchhhhcccCcHHHHHHHHHHHHHH
Q 008482 30 YTFSIYSPALKTTQHYDQTTLDTVSVFKDIGANT-GTLSGVLYTYSTSDHSSHHPRQQRLTRLLGPWVVLLVGAIQCFAG 108 (564)
Q Consensus 30 Y~fS~ys~~L~~~lg~sq~~~~~i~~a~~vg~~~-g~~~G~l~d~~~~~~~~~~~~~~~~~~~~GP~~~~~iG~vl~~~G 108 (564)
+.|+..-|++++++|+|.+|+..+..+..+|... .++.|.+.||+| +|.+++ +++..++.
T Consensus 8 ~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~g------------------rr~~~~-~~~~~~~~ 68 (368)
T TIGR00903 8 VTFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAF------------------KRWFLF-GSLATFAA 68 (368)
T ss_pred HHHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc------------------chHHHH-HHHHHHHH
Confidence 5678888999999999999999888887777655 678899988875 776654 44444433
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHhhhcC-CCCcceeeeehhhhhhhHHHHHHHHHhhcCCC
Q 008482 109 YFLMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFP-TYSGTAVGIMKGFVGLSGAILIQVYQTFFNNK 187 (564)
Q Consensus 109 y~~~~l~~~g~i~~~~~~~l~~~~~l~G~g~~~~~ta~l~t~~k~FP-~~RG~a~Gl~~a~~GLsa~i~s~i~~~~f~~~ 187 (564)
-.+... .. .+++.+...-++.|.|.+. +.++.....+||| ++||++.|+...+..+|+.+-.
T Consensus 69 ~~~~~~--~~----~~~~~l~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~---------- 131 (368)
T TIGR00903 69 AAGRLL--DP----FNYEWLLACQLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFAL---------- 131 (368)
T ss_pred HHHHHH--Hh----ccHHHHHHHHHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHH----------
Confidence 221111 11 2467777888888999885 4555666688897 6799999999999999886643
Q ss_pred chhHHHHHHHHHHHHhhhhheeeeeccCCCCcccccchhHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHh
Q 008482 188 PTSYLLLLALLASIDPLLLMWFVRICNTNEGNEKKHLNSFSLIALIVAAYLMVIIILEHIFALPFLVRVLTLILLLLLLA 267 (564)
Q Consensus 188 ~~~~llfla~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 267 (564)
.....+ ....+.+ . .|....+.. ++ ..++.
T Consensus 132 ------------~~~~~l----~~~~gWr-----~---~f~~~~~l~----~~---------------------~~~~~- 161 (368)
T TIGR00903 132 ------------AAGLKI----YTAGGLQ-----L---LIIPIAAVA----AA---------------------GIILV- 161 (368)
T ss_pred ------------HHHHHH----HHccchH-----H---HHHHHHHHH----HH---------------------HHHHH-
Confidence 221111 1111111 0 011100000 00 00000
Q ss_pred hhhhhhhhccCCCCCCCCcCccccCCCCCCCccchhhhccccCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCcHHHHh
Q 008482 268 SPLYVAIRVQGSDSDRTSETSFCEEDELTDDPHEMHAEKMHVRQDPVGYHRLPSEPDVGTDTNDATTSLWGGDLDLLQAI 347 (564)
Q Consensus 268 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l 347 (564)
....++++++ + + + . . +.+ + ....+++++
T Consensus 162 ---~~~lp~~p~~-~-----------------~-------------~-~--~--~~~-----------~--~~~~~~~ll 189 (368)
T TIGR00903 162 ---LAALPALPFQ-A-----------------A-------------E-G--F--GFK-----------D--AVKEFGALA 189 (368)
T ss_pred ---HHHcCCCCCC-C-----------------C-------------C-C--c--chH-----------H--HHHHHHHHH
Confidence 0000100000 0 0 0 0 0 000 0 001367899
Q ss_pred hcHHHHHHHHHHHhhhhchhheecchhHHHhhcCCCccchhHHHHHHHHHHHHhhhhhhhhhhhhhhcccCchhHHHHHH
Q 008482 348 CTLEFWILSFAMACGMGSGLATVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVIT 427 (564)
Q Consensus 348 ~t~~Fwll~~~~~~~~g~gl~~i~n~~~i~~~~g~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~R~~~l~~~ 427 (564)
+++++|.+++.+++....-..+.+-++++.++.|++.. ++...++..+ .|-+..++++||+.||. .|.......
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~wlp~~L~~~g~s~~-~~~~~~l~~~---~g~~g~~~~~d~~~r~~--~r~~~~~~~ 263 (368)
T TIGR00903 190 GRKDLWIIGAILGFGVALFDNLAIWLEAALRPAGLEDI-AGDAVALAIL---AGLIGVAVIPDRVARAG--LRSIYIRAA 263 (368)
T ss_pred cChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCChH-HHHHHHHHHH---HHHHHHHHhhHHhhhhh--hHHHHHHHH
Confidence 99999999999999888877777779999988887753 4444444444 44455699999997653 233333323
Q ss_pred HHHHHHHHHHHHh-cCcchHHHHHHHHHhhhccccchhHHHHHHhhccCchhhhhhhHhhhhhhHHHhhhhhhhhhhhhc
Q 008482 428 LAAMSIGHLIIAS-GLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDR 506 (564)
Q Consensus 428 ~~l~~i~~ll~~~-~~~~~l~~~~~l~G~~~G~~~~~~P~ivse~FG~k~fg~nyg~~~~a~~iG~~lf~~~l~g~iyD~ 506 (564)
..++++..+++.. ..+........+.|+..+..+++..++++|.|.+++-|+-.|+.....-+|+. .++.+.+.+..
T Consensus 264 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~-~~~~~~~~~~~- 341 (368)
T TIGR00903 264 ALLIAAFFLALAFELNRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISV-ALALAAMLFIS- 341 (368)
T ss_pred HHHHHHHHHHHHHccccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHH-HHHHHHHHHhc-
Confidence 3333444333332 22323343445567777777777889999999999989999988866666664 34445555552
Q ss_pred ccCCCCccccCCcccHHHHHHHHHHHHHHHHHH
Q 008482 507 EASGEGNKCTGTHCFMLSFFIMGSATLCGSLAA 539 (564)
Q Consensus 507 ~~~~~~~~C~G~~Cy~~af~i~~~l~v~a~vl~ 539 (564)
+ ....|.+.++.++++.+..
T Consensus 342 --~-----------~~~~f~~~~~~~~i~~~~~ 361 (368)
T TIGR00903 342 --S-----------AEAYFTFLAILITIAFAIA 361 (368)
T ss_pred --C-----------HHHHHHHHHHHHHHHHHHH
Confidence 2 5778888887777776553
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.3e-14 Score=152.56 Aligned_cols=382 Identities=19% Similarity=0.198 Sum_probs=229.0
Q ss_pred ccccccHHHHhhcCCCcchhhHHHHhhhhhcccc-ccchhhhccccCCCCCCCccchhhhcccCcHHHHHHHHHHHHHHH
Q 008482 31 TFSIYSPALKTTQHYDQTTLDTVSVFKDIGANTG-TLSGVLYTYSTSDHSSHHPRQQRLTRLLGPWVVLLVGAIQCFAGY 109 (564)
Q Consensus 31 ~fS~ys~~L~~~lg~sq~~~~~i~~a~~vg~~~g-~~~G~l~d~~~~~~~~~~~~~~~~~~~~GP~~~~~iG~vl~~~Gy 109 (564)
.|++=.|+|+|+.++|.+|+..++++..+.=-++ +..|.+.||. +||..+.+|-++.++--
T Consensus 47 nF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~------------------npr~fm~~gLilsai~n 108 (448)
T COG2271 47 NFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRS------------------NPRYFMAFGLILSAIVN 108 (448)
T ss_pred hHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccC------------------CCceeehHHHHHHHHHH
Confidence 6889999999999999999998876655544443 5667777765 59999988888888877
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHhhhcCC-CCcceeeeehhhhhhhHHHHHHHHHhhcCCCc
Q 008482 110 FLMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFPT-YSGTAVGIMKGFVGLSGAILIQVYQTFFNNKP 188 (564)
Q Consensus 110 ~~~~l~~~g~i~~~~~~~l~~~~~l~G~g~~~~~ta~l~t~~k~FP~-~RG~a~Gl~~a~~GLsa~i~s~i~~~~f~~~~ 188 (564)
+++ |+.+ +++++.++.++-|.=++++-.+|-.+-.+|||+ +||+..++--...-+|+++..-+..
T Consensus 109 il~-----Gfs~--s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~------- 174 (448)
T COG2271 109 ILF-----GFSP--SLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVAL------- 174 (448)
T ss_pred HHH-----hhhh--HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHH-------
Confidence 774 5543 678888888889988888889999999999985 6999999999999999988642221
Q ss_pred hhHHHHHHHHHHHHhhhhheeeeeccCCCCcccccchhHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHhh
Q 008482 189 TSYLLLLALLASIDPLLLMWFVRICNTNEGNEKKHLNSFSLIALIVAAYLMVIIILEHIFALPFLVRVLTLILLLLLLAS 268 (564)
Q Consensus 189 ~~~llfla~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 268 (564)
+ +. +....+ ... .|.. -++..++ ...
T Consensus 175 ---------------l-a~-~~~~~~-----w~~---~f~~----pgiiaii-------------------------val 200 (448)
T COG2271 175 ---------------L-AF-FAFHGG-----WRA---AFYF----PGIIAII-------------------------VAL 200 (448)
T ss_pred ---------------H-HH-HHhccc-----hhH---HHHH----HHHHHHH-------------------------HHH
Confidence 1 11 111000 001 1110 0000000 000
Q ss_pred hhhhhhhccCCCCCCCCcCccccCCCCCCCccchhhhccccCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCcHHH---
Q 008482 269 PLYVAIRVQGSDSDRTSETSFCEEDELTDDPHEMHAEKMHVRQDPVGYHRLPSEPDVGTDTNDATTSLWGGDLDLLQ--- 345 (564)
Q Consensus 269 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~--- 345 (564)
......+..|++ +.+. +.+| -+.||.|.. .++ +.+++.|.+|
T Consensus 201 ~~~~~~rd~Pqs------------~GLP-~ie~-------~~~d~~e~~--~~~-------------~~~~~ls~~~i~~ 245 (448)
T COG2271 201 ILLFLLRDRPQS------------EGLP-PIEE-------YRGDPLEIY--EEE-------------KENEGLTAWQIFV 245 (448)
T ss_pred HHHHHhCCCccc------------cCCC-CHHH-------hhcCchhhh--hhh-------------ccCCCccHHHHHH
Confidence 000111111110 1111 1000 001111000 000 0011234333
Q ss_pred --HhhcHHHHHHHHHHHhhhhchhheecchhHHH--hhcCCCccchhHHHHHHHHHHHHhhhhhhhhhhhhhhcccCchh
Q 008482 346 --AICTLEFWILSFAMACGMGSGLATVNNISQIG--GSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARP 421 (564)
Q Consensus 346 --~l~t~~Fwll~~~~~~~~g~gl~~i~n~~~i~--~~~g~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~R~ 421 (564)
+++++--|++.++.++.=-.=..+ +.=+|+. |..|++..++...++++=++...|-+++||+|||+-+ +|.
T Consensus 246 ~YVL~Nk~iW~la~a~vfvYivR~gi-~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfk----grR 320 (448)
T COG2271 246 KYVLKNKLIWLLALANVFVYVVRYGI-NDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFK----GRR 320 (448)
T ss_pred HHHHcChHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcc----ccc
Confidence 689999999999888764444444 3344443 3468999899999999999999999999999999954 233
Q ss_pred HHHHHHHHHH-HHHHHHHHhc--C-cchHHHHHHHHHh-hhccccchhHHHHHHhhccC-chhhhhhhHhhhhhh-HHHh
Q 008482 422 LFMVITLAAM-SIGHLIIASG--L-PGALYAGSILVGV-CYGSQWSLMPTIASEIFGVL-QMGTIFNTITIANPV-GSYI 494 (564)
Q Consensus 422 ~~l~~~~~l~-~i~~ll~~~~--~-~~~l~~~~~l~G~-~~G~~~~~~P~ivse~FG~k-~fg~nyg~~~~a~~i-G~~l 494 (564)
....+.+.+. .++....-.. . +....+....+|+ -||=. ..-.+.+--|.+| --|+.=|+.-+..-+ |. .
T Consensus 321 ~p~~~i~~~~i~~~~~~~w~~~~~~~~l~~~~l~~iGf~IyGPq--mLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga-~ 397 (448)
T COG2271 321 GPMALIFMLLITASLVLYWLAPNGSYLLDAILLFIIGFLIYGPQ--MLIGLAAAEFVPKKAAGTATGFVGLFAYLIGA-A 397 (448)
T ss_pred chHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHhhHH--HHHHHHHhccccHhhccchhchhhhHHHHhhH-H
Confidence 3333333332 2232222111 1 1122223344455 45544 2333334445554 467777877654444 65 3
Q ss_pred hhhhhhhhhhhcccCCCCccccCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 008482 495 FSVRVVGYIYDREASGEGNKCTGTHCFMLSFFIMGSATLCGSLAAFGLFLRTKRFYNEV 553 (564)
Q Consensus 495 f~~~l~g~iyD~~~~~~~~~C~G~~Cy~~af~i~~~l~v~a~vl~~~l~~r~~~~~~~~ 553 (564)
++....|++-|..+ ....|++..+.++++.++.+...++.++.+|++
T Consensus 398 ~a~~~~g~i~d~~g------------W~g~Fi~~~~~a~l~~lll~~~~~~~~~~~~~~ 444 (448)
T COG2271 398 LAGLPLGYIADTWG------------WDGGFIVLSIAALLAILLLLPVWNAEERKIRDE 444 (448)
T ss_pred hcCCcceeeEecCC------------CcchHHHHHHHHHHHHHHHHHHHhhcchhhhhh
Confidence 56667888888844 578899999999998877776666555555544
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.9e-15 Score=173.20 Aligned_cols=144 Identities=10% Similarity=0.010 Sum_probs=112.2
Q ss_pred chhHHHHHHHHHHHHhcCc-ccccccccHHHHhhcCCCcchhhHHHHhhhhhccc-cccchhhhccccCCCCCCCccchh
Q 008482 10 NTRWVSTVASIWIQCTSGS-LYTFSIYSPALKTTQHYDQTTLDTVSVFKDIGANT-GTLSGVLYTYSTSDHSSHHPRQQR 87 (564)
Q Consensus 10 ~~Rw~~l~a~~~i~l~~G~-~Y~fS~ys~~L~~~lg~sq~~~~~i~~a~~vg~~~-g~~~G~l~d~~~~~~~~~~~~~~~ 87 (564)
+.+|..++...+..+..|. ....+...|++++++|++..+...+..+..+|..+ .++.|.+.||+|
T Consensus 163 ~~~~~l~~i~~l~~~~~g~d~~~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~G------------ 230 (742)
T TIGR01299 163 RFQWALFFVLGLALMADGVEVFVVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLG------------ 230 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC------------
Confidence 4467666665555555553 23466678889999999999999888888888866 467888888765
Q ss_pred hhcccCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHhhhcC-CCCcceeeeeh
Q 008482 88 LTRLLGPWVVLLVGAIQCFAGYFLMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFP-TYSGTAVGIMK 166 (564)
Q Consensus 88 ~~~~~GP~~~~~iG~vl~~~Gy~~~~l~~~g~i~~~~~~~l~~~~~l~G~g~~~~~ta~l~t~~k~FP-~~RG~a~Gl~~ 166 (564)
+|.+++++.++..++.++..+ . ++++.++++-++.|+|.+.....+.....+++| ++||.+.++..
T Consensus 231 ------RR~~lii~lil~~i~~ll~af-----a--~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~ 297 (742)
T TIGR01299 231 ------RKQCLLICLSVNGFFAFFSSF-----V--QGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLC 297 (742)
T ss_pred ------cHHHHHHHHHHHHHHHHHHHH-----H--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
Confidence 999999999888888777432 2 246677778889999999999999999999998 57999999999
Q ss_pred hhhhhhHHHHHH
Q 008482 167 GFVGLSGAILIQ 178 (564)
Q Consensus 167 a~~GLsa~i~s~ 178 (564)
++..+|+.+...
T Consensus 298 ~~~~iG~ila~~ 309 (742)
T TIGR01299 298 MFWMIGGIYAAA 309 (742)
T ss_pred HHHHHHHHHHHH
Confidence 999888876553
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.7e-14 Score=156.19 Aligned_cols=362 Identities=12% Similarity=0.067 Sum_probs=199.1
Q ss_pred chhHHHHHHHHHHHHhcCcc-cccccccHHHHhhcCCCcchhhHH-HHhhhhhc-c----c-cccchhhhccccCCCCCC
Q 008482 10 NTRWVSTVASIWIQCTSGSL-YTFSIYSPALKTTQHYDQTTLDTV-SVFKDIGA-N----T-GTLSGVLYTYSTSDHSSH 81 (564)
Q Consensus 10 ~~Rw~~l~a~~~i~l~~G~~-Y~fS~ys~~L~~~lg~sq~~~~~i-~~a~~vg~-~----~-g~~~G~l~d~~~~~~~~~ 81 (564)
+.||+...+.++..++...- ..++.+.|+++++++.+++|...+ .+....+. + + .++.|.+.||+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~------- 83 (434)
T PRK15075 11 ESKARAILRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRV------- 83 (434)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhh-------
Confidence 34666544333333333322 457899999999999999886533 22222222 2 1 34567777765
Q ss_pred CccchhhhcccCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHH--------HHHHHHHHHhhhhhhhhHHHHHHHhhh
Q 008482 82 HPRQQRLTRLLGPWVVLLVGAIQCFAGYFLMWASVVGLIPRPPVP--------VMCLFMLFAAHGMTFFNTADVVTSVRN 153 (564)
Q Consensus 82 ~~~~~~~~~~~GP~~~~~iG~vl~~~Gy~~~~l~~~g~i~~~~~~--------~l~~~~~l~G~g~~~~~ta~l~t~~k~ 153 (564)
|+|.+++++.++..++..+. +..+ +++ +++..-++.|.+.+..+.++.....++
T Consensus 84 -----------Grr~~l~~~~~~~~~~~~l~-----~~~~--~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~ 145 (434)
T PRK15075 84 -----------GRRKGLIVTLSIMASGTLLI-----AFVP--GYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEI 145 (434)
T ss_pred -----------chHHHHHHHHHHHHHHHHHH-----HhCC--cHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhh
Confidence 59999999999999888874 3332 333 345667888999998888888889999
Q ss_pred cC-CCCcceeeeehhhhhhhHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhhhhheeeeeccCCCCcccccchhHHHHHH
Q 008482 154 FP-TYSGTAVGIMKGFVGLSGAILIQVYQTFFNNKPTSYLLLLALLASIDPLLLMWFVRICNTNEGNEKKHLNSFSLIAL 232 (564)
Q Consensus 154 FP-~~RG~a~Gl~~a~~GLsa~i~s~i~~~~f~~~~~~~llfla~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~i 232 (564)
+| ++||++.++...+..++..+-..+. ..+.-.+.. ...+.-.... .|..
T Consensus 146 ~p~~~rg~~~~~~~~~~~~g~~~g~~~g----------------------~~l~~~~~~-~~~~~~gWr~---~f~~--- 196 (434)
T PRK15075 146 ATPGRKGFYTSWQSASQQVAVVFAALLG----------------------YLLNQWLSP-AQMAEWGWRI---PFLI--- 196 (434)
T ss_pred CCcccchHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHhCCH-HHHhccchHH---HHHH---
Confidence 97 6799999987776666654322111 110100000 0000000000 0100
Q ss_pred HHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHhhhhhhhhhccCCCCCCCCcCccccCCCCCCCccchhhhccccCCC
Q 008482 233 IVAAYLMVIIILEHIFALPFLVRVLTLILLLLLLASPLYVAIRVQGSDSDRTSETSFCEEDELTDDPHEMHAEKMHVRQD 312 (564)
Q Consensus 233 ~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (564)
..+. +.++.. .+...+|.+ +..
T Consensus 197 -~~~~------------------------~~~~~~------~~~~~~e~~---------------~~~------------ 218 (434)
T PRK15075 197 -GCLI------------------------VPFIFL------IRRSLEETE---------------EFL------------ 218 (434)
T ss_pred -HHHH------------------------HHHHHH------HHHhcCCCH---------------HHH------------
Confidence 0000 000000 010000000 000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCccCCCCCCcHHHHhhcHHHHHHHHHHHhhhhchh-heecchhHHHhh-cCCCccchhHH
Q 008482 313 PVGYHRLPSEPDVGTDTNDATTSLWGGDLDLLQAICTLEFWILSFAMACGMGSGL-ATVNNISQIGGS-LGYSSFETSSL 390 (564)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~t~~Fwll~~~~~~~~g~gl-~~i~n~~~i~~~-~g~~~~~aa~~ 390 (564)
+++ .++ + ....+++..++++.|.+.+...+....+. .+.+..+.+.++ .|++..++...
T Consensus 219 -~~~----~~~------------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~ 279 (434)
T PRK15075 219 -ARK----HRP------------S--MREIFRSLAANWRIVLAGMLMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLV 279 (434)
T ss_pred -Hhh----hcc------------c--cccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 000 000 0 01113344566666765444333223333 334446777765 68887777777
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhhcccCchhHHHHHHHHHHH-HHHHH--HHhcCcc--hHHHHHHHHHhhhccccchhH
Q 008482 391 ISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMS-IGHLI--IASGLPG--ALYAGSILVGVCYGSQWSLMP 465 (564)
Q Consensus 391 Vsl~si~n~~GRl~~G~lsD~l~~~~~~~R~~~l~~~~~l~~-i~~ll--~~~~~~~--~l~~~~~l~G~~~G~~~~~~P 465 (564)
..+.++.+.+|++++|+++||+++|+ . +.....+.. ...+. .....+. .+.+...+.|+++|...+...
T Consensus 280 ~~~~~~~~~~~~~~~g~l~Dr~g~r~-----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 353 (434)
T PRK15075 280 TLCVGVSNFIWLPIGGALSDRIGRRP-----V-LIAFTVLAILTAYPALSWLVAAPSFARMLAVELWLSFLYGSYNGAMV 353 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcchH-----H-HHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhhHH
Confidence 78889999999999999999997532 2 222222211 11111 1112222 123334556788887777777
Q ss_pred HHHHHhhccCchhhhhhhHh-hhhhhHHHhhhhhhhhhhhhcccC
Q 008482 466 TIASEIFGVLQMGTIFNTIT-IANPVGSYIFSVRVVGYIYDREAS 509 (564)
Q Consensus 466 ~ivse~FG~k~fg~nyg~~~-~a~~iG~~lf~~~l~g~iyD~~~~ 509 (564)
..++|.+..+.-|+-.|+.. ++..+++. +++.+.|.+.|..+.
T Consensus 354 ~~~~e~~p~~~rg~~~g~~~~~~~~~~g~-~~p~~~g~i~~~~g~ 397 (434)
T PRK15075 354 VALTEVMPAEVRTAGFSLAYSLATAIFGG-FTPAISTWLIHVTGD 397 (434)
T ss_pred HHHHHHCCCCccchheeHHHHHHHHHHhh-hHHHHHHHHHHhcCC
Confidence 88999999888888777753 44444343 356678999998764
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.66 E-value=7.2e-16 Score=159.22 Aligned_cols=323 Identities=18% Similarity=0.201 Sum_probs=205.6
Q ss_pred ccccH-HHHhhcCCCcchhhHHHHhhhhhccc-cccchhhhccccCCCCCCCccchhhhcccCcHHHHHHHHHHHHHHHH
Q 008482 33 SIYSP-ALKTTQHYDQTTLDTVSVFKDIGANT-GTLSGVLYTYSTSDHSSHHPRQQRLTRLLGPWVVLLVGAIQCFAGYF 110 (564)
Q Consensus 33 S~ys~-~L~~~lg~sq~~~~~i~~a~~vg~~~-g~~~G~l~d~~~~~~~~~~~~~~~~~~~~GP~~~~~iG~vl~~~Gy~ 110 (564)
...-| .+++++|+|..|++.+.++..++..+ .++.|.+.||+| +|.++.++.++..++..
T Consensus 16 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g------------------~r~~l~~~~~~~~~~~~ 77 (352)
T PF07690_consen 16 SPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFG------------------RRRVLIIGLLLFALGSL 77 (352)
T ss_dssp HHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-------------------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC------------------CeeeEeehhhhhhhHHH
Confidence 33344 78899999999999888887777754 778888888865 99999999999999944
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHhhhcCC-CCcceeeeehhhhhhhHHHHHHHHHhhcCCCch
Q 008482 111 LMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFPT-YSGTAVGIMKGFVGLSGAILIQVYQTFFNNKPT 189 (564)
Q Consensus 111 ~~~l~~~g~i~~~~~~~l~~~~~l~G~g~~~~~ta~l~t~~k~FP~-~RG~a~Gl~~a~~GLsa~i~s~i~~~~f~~~~~ 189 (564)
....+ .+.|.+....++.|.+.+..+.+......+++|+ +|+++.|+.....+++..+...+..
T Consensus 78 ~~~~~-------~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~-------- 142 (352)
T PF07690_consen 78 LLAFA-------SNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGG-------- 142 (352)
T ss_dssp HHHHH-------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHH--------
T ss_pred Hhhhh-------hhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhh--------
Confidence 43322 2466777889999999999999999999999986 8999999999999999866532221
Q ss_pred hHHHHHHHHHHHHhhhhheeeeeccCCCCcccccchhHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHhhh
Q 008482 190 SYLLLLALLASIDPLLLMWFVRICNTNEGNEKKHLNSFSLIALIVAAYLMVIIILEHIFALPFLVRVLTLILLLLLLASP 269 (564)
Q Consensus 190 ~~llfla~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~p 269 (564)
. +.+..+.+ ..+.. ....+.+. .+ +...
T Consensus 143 --------------~----l~~~~~~~--------~~~~~---~~~~~~~~----------------------~i-l~~~ 170 (352)
T PF07690_consen 143 --------------F----LISYFGWR--------WAFLI---SAILSLIA----------------------AI-LFIL 170 (352)
T ss_dssp --------------H----CCCHCHHC--------CHHHH---HHHHHHHH----------------------HH-HHHC
T ss_pred --------------h----hhhccccc--------ccccc---ccchhhhh----------------------hh-hHhh
Confidence 1 11111111 01111 00000000 00 0000
Q ss_pred hhhhhhccCCCCCCCCcCccccCCCCCCCccchhhhccccCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCC--cHHHHh
Q 008482 270 LYVAIRVQGSDSDRTSETSFCEEDELTDDPHEMHAEKMHVRQDPVGYHRLPSEPDVGTDTNDATTSLWGGDL--DLLQAI 347 (564)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--t~~~~l 347 (564)
. . +.++++.++. ++ +++ +. +...+. .+++..
T Consensus 171 ~-~--~~~~~~~~~~-------------~~--------------~~~-----~~------------~~~~~~~~~~~~~~ 203 (352)
T PF07690_consen 171 F-L--PEPPPPRERE-------------SP--------------KES-----ES------------KKPKPLKPGFKSLF 203 (352)
T ss_dssp C-C-----STTTT---------------SS--------------TTT-----T--------------HHHCCCH-CTHHH
T ss_pred h-h--hhcccccccc-------------cc--------------ccc-----cc------------cccccccccccccc
Confidence 0 0 0000000000 00 000 00 000011 257788
Q ss_pred hcHHHHHHHHHHHhhhhchhheecchhHH-HhhcCCC-ccchhHHHHHHHHHHHHhhhhhhhhhhhhhhcccCchhHHHH
Q 008482 348 CTLEFWILSFAMACGMGSGLATVNNISQI-GGSLGYS-SFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMV 425 (564)
Q Consensus 348 ~t~~Fwll~~~~~~~~g~gl~~i~n~~~i-~~~~g~~-~~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~R~~~l~ 425 (564)
+++.+|.+++.+++.......+...+..+ .+..|.+ ..+.+...++..+.+..++++.|+++||+++++ . ..
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~--~~ 277 (352)
T PF07690_consen 204 KNPVLWILLIAFFLFFFVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRR----R--LL 277 (352)
T ss_dssp HHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHH----H--HH
T ss_pred ccchhhhhhhhhhHHHHHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHH----H--HH
Confidence 88889966666666543444444455554 4567888 567778899999999999999999999986422 1 22
Q ss_pred HHHHHHHHHHHHH---Hhc-CcchHHHHHHHHHhhhccccchhHHHHHHhhccCchhhhhhhHhhhhhhHHH
Q 008482 426 ITLAAMSIGHLII---ASG-LPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSY 493 (564)
Q Consensus 426 ~~~~l~~i~~ll~---~~~-~~~~l~~~~~l~G~~~G~~~~~~P~ivse~FG~k~fg~nyg~~~~a~~iG~~ 493 (564)
.......+..+.+ ... .+...+....+.|+++|..+.....++.|.++.++.|+.+|+......+|..
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~ 349 (352)
T PF07690_consen 278 IAILLLILGALGLLLLPFSSSPVWLIIALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGI 349 (352)
T ss_dssp HHHHHHHHHHHHHCCSHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH
Confidence 2222222222221 121 2234556778899999999999999999999999999999999877777764
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.64 E-value=5.5e-14 Score=147.31 Aligned_cols=177 Identities=14% Similarity=0.071 Sum_probs=120.2
Q ss_pred HHHhhcHHHHHHHHHHHhhhhchhheecchhHHH-hhcCCCccchhHHHHHHHHHHHHhhhhhhhhhhhhhhcccCchhH
Q 008482 344 LQAICTLEFWILSFAMACGMGSGLATVNNISQIG-GSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPL 422 (564)
Q Consensus 344 ~~~l~t~~Fwll~~~~~~~~g~gl~~i~n~~~i~-~~~g~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~R~~ 422 (564)
++.++++++|.++...++..+...++........ ++.|.++.+.+...++..+.+..+++..|+++||+++|+
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~------ 266 (375)
T TIGR00899 193 RGLLASRDTRLLFVACTLMWGCNILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRR------ 266 (375)
T ss_pred hhhhcCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchh------
Confidence 3456788888877766655444334444555555 457888777777777778888899999999999996432
Q ss_pred HHHHHHHHHHHHHHHHH-hcCcchHHHHHHHHHhhhccccchhHHHHHHhhccCchhhhhhhHhhhhhhHHHhhhhhhhh
Q 008482 423 FMVITLAAMSIGHLIIA-SGLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVG 501 (564)
Q Consensus 423 ~l~~~~~l~~i~~ll~~-~~~~~~l~~~~~l~G~~~G~~~~~~P~ivse~FG~k~fg~nyg~~~~a~~iG~~lf~~~l~g 501 (564)
.+.....+..+..++.. ......+++..++.|+++|.........+.|.+. ++.++..++......+|.. +++.+.|
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~-~g~~~~g 344 (375)
T TIGR00899 267 LMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIGILAGIGMLYFQDLMP-GRAGAATTLYTNTGRVGWI-IAGSVGG 344 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-chhhHHHHHHHHHHHHHHH-HHHHHHH
Confidence 23333333333332222 2222234555677789999888888888899986 4567888887766566664 5677899
Q ss_pred hhhhcccCCCCccccCCcccHHHHHHHHHHHHHHHHHHH
Q 008482 502 YIYDREASGEGNKCTGTHCFMLSFFIMGSATLCGSLAAF 540 (564)
Q Consensus 502 ~iyD~~~~~~~~~C~G~~Cy~~af~i~~~l~v~a~vl~~ 540 (564)
.+.|..+ |+..|.+.+++++++.++..
T Consensus 345 ~~~~~~g------------~~~~~~~~~~~~~~~~~~~~ 371 (375)
T TIGR00899 345 ILAERWS------------YHAVYWFAIVMLIVALFCLL 371 (375)
T ss_pred HHHHhcc------------chhHHHHHHHHHHHHHHHHh
Confidence 9998754 78999988888877775543
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=8.4e-14 Score=153.54 Aligned_cols=378 Identities=14% Similarity=0.025 Sum_probs=222.1
Q ss_pred cccccHHHHhhcCCCcchhhHHHHhhhhhccc-cccchhhhccccCCCCCCCccchhhhcccCcHHHHHHHHHHHHHHHH
Q 008482 32 FSIYSPALKTTQHYDQTTLDTVSVFKDIGANT-GTLSGVLYTYSTSDHSSHHPRQQRLTRLLGPWVVLLVGAIQCFAGYF 110 (564)
Q Consensus 32 fS~ys~~L~~~lg~sq~~~~~i~~a~~vg~~~-g~~~G~l~d~~~~~~~~~~~~~~~~~~~~GP~~~~~iG~vl~~~Gy~ 110 (564)
-++--|++.+++|.|+.|.+.+.++..++... .++.|.+.||+| +|.++++|.+++.+|.+
T Consensus 25 v~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~G------------------rk~~l~~~~~~~~~~~~ 86 (495)
T PRK14995 25 LHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIG------------------FKRLLMLGGTLFGLASL 86 (495)
T ss_pred HHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhc------------------cHHHHHHHHHHHHHHHH
Confidence 44457899999999999999888887777654 567888888764 99999999999999998
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHhhhc-C-CCCcceeeeehhhhhhhHHHHHHHHHhhcCCCc
Q 008482 111 LMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNF-P-TYSGTAVGIMKGFVGLSGAILIQVYQTFFNNKP 188 (564)
Q Consensus 111 ~~~l~~~g~i~~~~~~~l~~~~~l~G~g~~~~~ta~l~t~~k~F-P-~~RG~a~Gl~~a~~GLsa~i~s~i~~~~f~~~~ 188 (564)
+. +.. ++++.++..-++.|.|.+..+.+......++| | ++||++.|+..+..++++.+-..+...+.+.-.
T Consensus 87 ~~-----~~a--~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~g 159 (495)
T PRK14995 87 AA-----AFS--PTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFY 159 (495)
T ss_pred HH-----HHc--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 73 333 35777788888999999988888777778998 4 579999999999999998777766655544322
Q ss_pred hhHHHHHHHHHHH--HhhhhheeeeeccCCCCcccccchhHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHH
Q 008482 189 TSYLLLLALLASI--DPLLLMWFVRICNTNEGNEKKHLNSFSLIALIVAAYLMVIIILEHIFALPFLVRVLTLILLLLLL 266 (564)
Q Consensus 189 ~~~llfla~~p~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 266 (564)
-+..++. ..|.. ..++...+++. +++++++.++.................+.+.......+..+.......+++
T Consensus 160 wr~~f~i-~~~~~~~~~~l~~~~l~~---~~~~~~~~~d~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (495)
T PRK14995 160 WGSVFLI-NVPIVLVVMGLTARYVPR---QAGRRDQPLNLGHALMLIVAILLLVYSAKTALKGFLSLWVTSLTLLTGALL 235 (495)
T ss_pred hHHHHHH-HHHHHHHHHHHHHHhCCC---CCCCCCCCCChHhHHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHH
Confidence 2222222 22222 11222222322 111111222211111111111111111111110000111111000000000
Q ss_pred hhhhhhhhhccCCCCCCCCcCccccCCCCCCCccchhhhccccCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCcHHHH
Q 008482 267 ASPLYVAIRVQGSDSDRTSETSFCEEDELTDDPHEMHAEKMHVRQDPVGYHRLPSEPDVGTDTNDATTSLWGGDLDLLQA 346 (564)
Q Consensus 267 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~ 346 (564)
.... ... +. . ... ..-..++
T Consensus 236 l~~f---~~~--e~-~-------------------------------------~~~-----------------p~~~~~l 255 (495)
T PRK14995 236 LGLF---IRT--QL-A-------------------------------------ASR-----------------PMIDMRL 255 (495)
T ss_pred HHHH---HHH--Hh-c-------------------------------------CCC-----------------CCcCHHH
Confidence 0000 000 00 0 000 0111577
Q ss_pred hhcHHHHHHHHHHHhhhhchhheecchhHHHhh-cCCCccchhHHHHHHHHHHHHhhhhhhhhhhhhhhcccCchhHHHH
Q 008482 347 ICTLEFWILSFAMACGMGSGLATVNNISQIGGS-LGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMV 425 (564)
Q Consensus 347 l~t~~Fwll~~~~~~~~g~gl~~i~n~~~i~~~-~g~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~R~~~l~ 425 (564)
+|++.|+...+..++...+-...........|. .|+++.+++......++...++.++.|.+.||+++| ..+.
T Consensus 256 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~------~~~~ 329 (495)
T PRK14995 256 FTHRIILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLR------LVAT 329 (495)
T ss_pred hCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCch------HHHH
Confidence 888999887766666544433333345555554 689998899999999999999999999999999642 2344
Q ss_pred HHHHHHHHHHHHHH-h--cC-cchHHHHHHHHHhhhccccchhHHHHHHhhccCchhhhhhhHhhhhhhHHHhhhhhhhh
Q 008482 426 ITLAAMSIGHLIIA-S--GL-PGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVG 501 (564)
Q Consensus 426 ~~~~l~~i~~ll~~-~--~~-~~~l~~~~~l~G~~~G~~~~~~P~ivse~FG~k~fg~nyg~~~~a~~iG~~lf~~~l~g 501 (564)
...++.+++.+++. . .. ....++..++.|++.|..+......+.+....++.|...++..+...+|.. ++..+.|
T Consensus 330 ~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~-~G~ai~g 408 (495)
T PRK14995 330 GGMALSALSFYGLAMTDFSTQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAG-LGIAIFG 408 (495)
T ss_pred HHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHH-HHHHHHH
Confidence 44455555544332 1 11 223455678889999988877777788888888888887776544444432 2333444
Q ss_pred hhhh
Q 008482 502 YIYD 505 (564)
Q Consensus 502 ~iyD 505 (564)
.+++
T Consensus 409 ~i~~ 412 (495)
T PRK14995 409 LLLS 412 (495)
T ss_pred HHHH
Confidence 4444
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=9.3e-15 Score=156.48 Aligned_cols=365 Identities=11% Similarity=-0.000 Sum_probs=200.0
Q ss_pred hchhHHHHHHHHHHHHhcCcccccccccHHHHhhcCCCcchhhHHHHhhhhhcc-ccccchhhhccccCCCCCCCccchh
Q 008482 9 LNTRWVSTVASIWIQCTSGSLYTFSIYSPALKTTQHYDQTTLDTVSVFKDIGAN-TGTLSGVLYTYSTSDHSSHHPRQQR 87 (564)
Q Consensus 9 ~~~Rw~~l~a~~~i~l~~G~~Y~fS~ys~~L~~~lg~sq~~~~~i~~a~~vg~~-~g~~~G~l~d~~~~~~~~~~~~~~~ 87 (564)
.++.|..++..++.. .|.-..++..++.+++++|+|..|+..+.....++.. ..++.|.+.||+|
T Consensus 6 ~~~~~~l~~~~~~~~--~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g------------ 71 (395)
T PRK10054 6 RRSTSALLASSLLLT--IGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFD------------ 71 (395)
T ss_pred CchHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC------------
Confidence 344555555444443 3444455667788999999999999977666555554 3567777777764
Q ss_pred hhcccCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHhhhcC-CCCcceeeeeh
Q 008482 88 LTRLLGPWVVLLVGAIQCFAGYFLMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFP-TYSGTAVGIMK 166 (564)
Q Consensus 88 ~~~~~GP~~~~~iG~vl~~~Gy~~~~l~~~g~i~~~~~~~l~~~~~l~G~g~~~~~ta~l~t~~k~FP-~~RG~a~Gl~~ 166 (564)
+|.++.++.++..+++.++... + +++.+....++.|.+.+..+.+.-.-..+.+| ++||++.|+.-
T Consensus 72 ------~k~~~~~~~~~~~~~~~~~~~~-----~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 138 (395)
T PRK10054 72 ------KKRYMLLAITAFASGFIAIPLV-----N--NVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNY 138 (395)
T ss_pred ------cchhHHHHHHHHHHHHHHHHHH-----h--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHH
Confidence 8899999999998988764322 1 34444443445555545444444444456665 56999988888
Q ss_pred hhhhhhHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhhhhheeeeeccCCCCcccccchhHHHHHHHHHHHHHHHHHHhh
Q 008482 167 GFVGLSGAILIQVYQTFFNNKPTSYLLLLALLASIDPLLLMWFVRICNTNEGNEKKHLNSFSLIALIVAAYLMVIIILEH 246 (564)
Q Consensus 167 a~~GLsa~i~s~i~~~~f~~~~~~~llfla~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~y~~~~~~~~~ 246 (564)
....++..+- |.+...+. + .+.+ . .|....+. +.+.
T Consensus 139 ~~~~lg~~ig----------------------p~l~~~l~----~-~g~~-----~---~f~~~~~~---~~i~------ 174 (395)
T PRK10054 139 TMLNIGWTVG----------------------PPLGTLLV----M-QSIN-----L---PFWLAAIC---SAFP------ 174 (395)
T ss_pred HHHHHHHHHH----------------------HHHHHHHH----H-hccC-----c---HHHHHHHH---HHHH------
Confidence 8777776553 33332211 1 1111 1 11111000 0000
Q ss_pred hccCchHHHHHHHHHHHHHHhhhhhhhhhccCCCCCCCCcCccccCCCCCCCccchhhhccccCCCCCCCCCCCCCCCCC
Q 008482 247 IFALPFLVRVLTLILLLLLLASPLYVAIRVQGSDSDRTSETSFCEEDELTDDPHEMHAEKMHVRQDPVGYHRLPSEPDVG 326 (564)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~ll~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (564)
+++.. ...+.+++ ++ + + ++
T Consensus 175 ----------------~i~~~----~~~~~~~~----~~--------------~-------------~-------~~--- 193 (395)
T PRK10054 175 ----------------LVFIQ----IWVQRSEK----AI--------------A-------------T-------ET--- 193 (395)
T ss_pred ----------------HHHHH----HHHhcccc----cc--------------c-------------c-------ch---
Confidence 00000 00010000 00 0 0 00
Q ss_pred CCCCCCCccCCCCCCcHHHHhhcHHHHHHHHHHHhhhhchhheecchhHHHhh---cCCCccchhHHHHHHHHHHHHhhh
Q 008482 327 TDTNDATTSLWGGDLDLLQAICTLEFWILSFAMACGMGSGLATVNNISQIGGS---LGYSSFETSSLISLWSIWNFLGRF 403 (564)
Q Consensus 327 ~~~~~~~~~~~~~~~t~~~~l~t~~Fwll~~~~~~~~g~gl~~i~n~~~i~~~---~g~~~~~aa~~Vsl~si~n~~GRl 403 (564)
+ +..+.++.+|+++||.+.+..++.......+.....+.... .+.+....+...++.++.-...+.
T Consensus 194 ---------~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 262 (395)
T PRK10054 194 ---------G--SVWSPSVLLQDKALLWFTCSGFLASFVSGAFASCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQY 262 (395)
T ss_pred ---------h--hhhhhhhhccCceehHHHHHHHHHHHHHHHhhhhHHHHHHHhcccchHHHHHHHHHHhhhhheeeehh
Confidence 0 01223678899999988877776554443343344444432 334333334555555555556666
Q ss_pred hhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHh--cCcchHHHHHHHHHhhhccccchhHHHHHHhhccCchhhhh
Q 008482 404 GAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIAS--GLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIF 481 (564)
Q Consensus 404 ~~G~lsD~l~~~~~~~R~~~l~~~~~l~~i~~ll~~~--~~~~~l~~~~~l~G~~~G~~~~~~P~ivse~FG~k~fg~ny 481 (564)
..|.+.||.+ |...+...+.+..++.+++.. +....+.++..+.|++++.........+.+.-..+.-|+.+
T Consensus 263 ~~g~~~~~~~------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~~~~~~ 336 (395)
T PRK10054 263 SVGRRLNAAN------IRPLMTAGTLCFVIGLVGFIFSGNSLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGMKASYF 336 (395)
T ss_pred HHHHHHccCC------chhHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCcccceehH
Confidence 7777777763 223344445555555544432 12223445677788888766666666777766666667777
Q ss_pred hhHhhhhhhHHHhhhhhhhhhhhhcccCCCCccccCCcccHHHHHHHHHHHHHHH
Q 008482 482 NTITIANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSFFIMGSATLCGS 536 (564)
Q Consensus 482 g~~~~a~~iG~~lf~~~l~g~iyD~~~~~~~~~C~G~~Cy~~af~i~~~l~v~a~ 536 (564)
|.... ..+|.. +++.+.|.++|+.+ +...|.+.+....++.
T Consensus 337 ~~~~~-~~~G~~-~Gp~~~G~l~~~~g------------~~~~~~~~~~~~~~~~ 377 (395)
T PRK10054 337 SAQSL-GWLGAA-INPLVSGVILTTLP------------PWSLFVILALAIVAAW 377 (395)
T ss_pred hHHHH-HHHHHH-HHHHHHHHHHHHcC------------hhhHHHHHHHHHHHHH
Confidence 64432 224443 45567999999875 4666766554444444
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=6e-14 Score=149.50 Aligned_cols=348 Identities=11% Similarity=0.061 Sum_probs=200.4
Q ss_pred hHHHHHHHHHHHHhcCcccccccccHHHHhhcCCCcchhhHHHHhhhhhccc-cccchhhhccccCCCCCCCccchhhhc
Q 008482 12 RWVSTVASIWIQCTSGSLYTFSIYSPALKTTQHYDQTTLDTVSVFKDIGANT-GTLSGVLYTYSTSDHSSHHPRQQRLTR 90 (564)
Q Consensus 12 Rw~~l~a~~~i~l~~G~~Y~fS~ys~~L~~~lg~sq~~~~~i~~a~~vg~~~-g~~~G~l~d~~~~~~~~~~~~~~~~~~ 90 (564)
.|..+..+++.++...+.+.+.-.-|++++++|+|.+|+..+..+..++..+ .++.|.+.||++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g--------------- 69 (401)
T PRK11043 5 KGFLVYLAGLSMLGFLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYG--------------- 69 (401)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcC---------------
Confidence 4455555555555444444444444667899999999999887787888765 578888888875
Q ss_pred ccCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHhhhcCCC-Ccceeeeehhhh
Q 008482 91 LLGPWVVLLVGAIQCFAGYFLMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFPTY-SGTAVGIMKGFV 169 (564)
Q Consensus 91 ~~GP~~~~~iG~vl~~~Gy~~~~l~~~g~i~~~~~~~l~~~~~l~G~g~~~~~ta~l~t~~k~FP~~-RG~a~Gl~~a~~ 169 (564)
+|.++.++.++..++.++... . .+++.++...++.|.|.+...........++||++ |+.+.+......
T Consensus 70 ---~r~~~~~~~~~~~~~~~~~~~-----~--~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (401)
T PRK11043 70 ---RKPVLLAGLSLFALGSLGMLW-----V--ESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLV 139 (401)
T ss_pred ---CcHHHHHHHHHHHHHHHHHHH-----h--cCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 999999999998888877433 2 24666666667778877766665556667889865 565555554445
Q ss_pred hhhHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhhhhheeeeeccCCCCcccccchhHHHHHHHHHHHHHHHHHHhhhcc
Q 008482 170 GLSGAILIQVYQTFFNNKPTSYLLLLALLASIDPLLLMWFVRICNTNEGNEKKHLNSFSLIALIVAAYLMVIIILEHIFA 249 (564)
Q Consensus 170 GLsa~i~s~i~~~~f~~~~~~~llfla~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~y~~~~~~~~~~~~ 249 (564)
++++.+. |.+... +.+..+.+ . .+.. . .+..++.
T Consensus 140 ~~~~~~g----------------------~~i~~~----l~~~~g~~-----~---~~~~---~-~~~~~~~-------- 173 (401)
T PRK11043 140 ALSPALA----------------------PLLGAW----LLNHFGWQ-----A---IFAT---L-FAITLLL-------- 173 (401)
T ss_pred HHHHHHH----------------------HHHHHH----HHhcCChH-----H---HHHH---H-HHHHHHH--------
Confidence 5554432 322211 11111111 0 0110 0 0000000
Q ss_pred CchHHHHHHHHHHHHHHhhhhhhhhhccCCCCCCCCcCccccCCCCCCCccchhhhccccCCCCCCCCCCCCCCCCCCCC
Q 008482 250 LPFLVRVLTLILLLLLLASPLYVAIRVQGSDSDRTSETSFCEEDELTDDPHEMHAEKMHVRQDPVGYHRLPSEPDVGTDT 329 (564)
Q Consensus 250 ~~~~~~~~~~~~~~~ll~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (564)
.... ...+ ++ . + +++ ++
T Consensus 174 -----------------~~~~-~~~~---~~-~-----------------~-------------~~~----~~------- 190 (401)
T PRK11043 174 -----------------ILPT-LRLK---PS-K-----------------K-------------ARK----QS------- 190 (401)
T ss_pred -----------------HHHH-HHcC---CC-C-----------------C-------------ccc----cc-------
Confidence 0000 0000 00 0 0 000 00
Q ss_pred CCCCccCCCCCCcHHHHhhcHHHHHHHHHHHhhhhchhheecchhHHHhhcCCCccchhHHHHHHHHHHHHhhhhhhhhh
Q 008482 330 NDATTSLWGGDLDLLQAICTLEFWILSFAMACGMGSGLATVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVS 409 (564)
Q Consensus 330 ~~~~~~~~~~~~t~~~~l~t~~Fwll~~~~~~~~g~gl~~i~n~~~i~~~~g~~~~~aa~~Vsl~si~n~~GRl~~G~ls 409 (564)
+...++++.++++++|...+.+.+....-..+.+..+.+.++.|+++.+.+.......++...|++..+++.
T Consensus 191 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~ 262 (401)
T PRK11043 191 --------QDALTFKQLLKSKTYLGNVLIFAACSAAFFAWLTGSPFILEQMGYSPADIGLSYVPQTIAFLVGGYGCRAAL 262 (401)
T ss_pred --------hHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 011246788999999987776666554444555556667777888877777666677778888999999999
Q ss_pred hhhhhcccCchhHHHHHHHHHHHHHHHHHHh-cC--cchHHHHHHHHHhhhccccchhHHHHHHhhccCchhhhhhhHhh
Q 008482 410 DYFLHVKEWARPLFMVITLAAMSIGHLIIAS-GL--PGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITI 486 (564)
Q Consensus 410 D~l~~~~~~~R~~~l~~~~~l~~i~~ll~~~-~~--~~~l~~~~~l~G~~~G~~~~~~P~ivse~FG~k~fg~nyg~~~~ 486 (564)
||+++|+. .....+...+..+.+++... .. ...+.+...+.|++.|..+........|.+. ++-|+..|+...
T Consensus 263 ~r~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~ 338 (401)
T PRK11043 263 QKWGGEQL---LPWLLVLFAVSVIAIWLASLLSHPSLVPLLIPFCVMAAANGAIYPIVVAQALRPFP-QATGKAAALQNT 338 (401)
T ss_pred HHcCHHHH---HHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCc-ccChHHHHHHHH
Confidence 99864321 11112222222222222221 11 1123445567788888777666666667774 567888888765
Q ss_pred hhhhHHHhhhhhhhhhhhhc
Q 008482 487 ANPVGSYIFSVRVVGYIYDR 506 (564)
Q Consensus 487 a~~iG~~lf~~~l~g~iyD~ 506 (564)
....++. .++.+.|.+.|.
T Consensus 339 ~~~~~~~-~~~~~~g~l~~~ 357 (401)
T PRK11043 339 LQLGLCF-LASLLVSALIST 357 (401)
T ss_pred HHHHHHH-HHHHHHHHccCC
Confidence 4444443 344467777774
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.6e-14 Score=147.64 Aligned_cols=162 Identities=12% Similarity=0.034 Sum_probs=110.8
Q ss_pred cHHHHhhcHH--HHHHHHHHHhhhhchhheecchhHHH-hhcCCCccchhHHHHHHHHHHHHhhhhhhhhhhhhhhcccC
Q 008482 342 DLLQAICTLE--FWILSFAMACGMGSGLATVNNISQIG-GSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEW 418 (564)
Q Consensus 342 t~~~~l~t~~--Fwll~~~~~~~~g~gl~~i~n~~~i~-~~~g~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~ 418 (564)
+.++.++++. +|......++......+....+..+. +..|.++.+.....++..+.+.+++++.|+++||+++|+
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~-- 286 (394)
T TIGR00883 209 PIRETLTKHRKPFLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRP-- 286 (394)
T ss_pred CHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHH--
Confidence 4566777765 77777666665554445555667777 456888777888888999999999999999999996432
Q ss_pred chhHHHHHHHHHHHHHHHH-H-Hh-cCc-chHHHHHHHHHhhhccccchhHHHHHHhhccCchhhhhhhH-hhhhhhHHH
Q 008482 419 ARPLFMVITLAAMSIGHLI-I-AS-GLP-GALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTI-TIANPVGSY 493 (564)
Q Consensus 419 ~R~~~l~~~~~l~~i~~ll-~-~~-~~~-~~l~~~~~l~G~~~G~~~~~~P~ivse~FG~k~fg~nyg~~-~~a~~iG~~ 493 (564)
..+.........+..+ . .. ..+ ..+++..++.|+++|..+....+.+.|.+..++-++.+|+. .++..+|+.
T Consensus 287 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~ 363 (394)
T TIGR00883 287 ---VLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGG 363 (394)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhh
Confidence 2221221121222111 1 11 122 23445567789999999999999999999998888888874 355556663
Q ss_pred hhhhhhhhhhhhcccC
Q 008482 494 IFSVRVVGYIYDREAS 509 (564)
Q Consensus 494 lf~~~l~g~iyD~~~~ 509 (564)
+++.+.|.++|..+.
T Consensus 364 -~~p~~~g~l~~~~g~ 378 (394)
T TIGR00883 364 -FAPYIAAALVAMTGD 378 (394)
T ss_pred -HHHHHHHHHHHHcCc
Confidence 567789999998775
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.1e-14 Score=157.09 Aligned_cols=122 Identities=11% Similarity=0.049 Sum_probs=89.7
Q ss_pred cHHHHhhc-----CCCcchhhHHHHhhhhhccc-cccchhhhccccCCCCCCCccchhhhcccCcHHHHHHHHHHHHHHH
Q 008482 36 SPALKTTQ-----HYDQTTLDTVSVFKDIGANT-GTLSGVLYTYSTSDHSSHHPRQQRLTRLLGPWVVLLVGAIQCFAGY 109 (564)
Q Consensus 36 s~~L~~~l-----g~sq~~~~~i~~a~~vg~~~-g~~~G~l~d~~~~~~~~~~~~~~~~~~~~GP~~~~~iG~vl~~~Gy 109 (564)
.+.+++++ +.+..+...+.....+|..+ .++.|.+.||+| +|.++.++.++..++.
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~G------------------rr~~~~~~~~~~~v~~ 100 (502)
T TIGR00887 39 TKMLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKLG------------------RKRVYGMELIIMIIAT 100 (502)
T ss_pred HHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc------------------cHHHHHHHHHHHHHHH
Confidence 35555532 34455556777777777765 567888888765 9999999999999988
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHhhhcC-CCCcceeeeehhhhhhhHHHH
Q 008482 110 FLMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFP-TYSGTAVGIMKGFVGLSGAIL 176 (564)
Q Consensus 110 ~~~~l~~~g~i~~~~~~~l~~~~~l~G~g~~~~~ta~l~t~~k~FP-~~RG~a~Gl~~a~~GLsa~i~ 176 (564)
.+.....+.. +..+++.++.+-++.|++.+..+..+......+|| ++||++.++...+..++..+-
T Consensus 101 ~~~~~~~~~~-~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g 167 (502)
T TIGR00887 101 VASGLSPGSS-PKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAG 167 (502)
T ss_pred HHHHHccCcc-cchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHH
Confidence 7755432211 10125667788889999999999999999999998 679999999888877777553
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.5e-13 Score=149.50 Aligned_cols=368 Identities=14% Similarity=0.122 Sum_probs=218.3
Q ss_pred cccccccHHHHhhcCCCcchhhHHHHhhhhhccc-cccchhhhccccCCCCCCCccchhhhcccCcHHHHHHHHHHHHHH
Q 008482 30 YTFSIYSPALKTTQHYDQTTLDTVSVFKDIGANT-GTLSGVLYTYSTSDHSSHHPRQQRLTRLLGPWVVLLVGAIQCFAG 108 (564)
Q Consensus 30 Y~fS~ys~~L~~~lg~sq~~~~~i~~a~~vg~~~-g~~~G~l~d~~~~~~~~~~~~~~~~~~~~GP~~~~~iG~vl~~~G 108 (564)
-.-+.+-|++++.+|+|.+|...+.++..+|..+ .++.|.+.||+| +|+++.+|.+++.+|
T Consensus 43 ~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G------------------~r~~l~~g~~~~~~~ 104 (438)
T PRK10133 43 NLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLS------------------YKAGIITGLFLYALG 104 (438)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC------------------cHHHHHHHHHHHHHH
Confidence 3456678999999999999999888888888765 678888888765 999999999999999
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHhhhcCCCCc-ceeeeehhhhhhhHHHHHHHHHhhcCCC
Q 008482 109 YFLMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFPTYSG-TAVGIMKGFVGLSGAILIQVYQTFFNNK 187 (564)
Q Consensus 109 y~~~~l~~~g~i~~~~~~~l~~~~~l~G~g~~~~~ta~l~t~~k~FP~~RG-~a~Gl~~a~~GLsa~i~s~i~~~~f~~~ 187 (564)
.++...+ ... ++++.++...++.|.|.+..++++-....++.|++|+ ...++..+++++++.+-..+....
T Consensus 105 ~~l~~~~--~~a--~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l---- 176 (438)
T PRK10133 105 AALFWPA--AEI--MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSL---- 176 (438)
T ss_pred HHHHHHH--Hhc--CCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 9875321 122 4577778888999999999998887777777676554 578888888888876643222110
Q ss_pred chhHHHHHHHHHHHHhhhhheeeeeccCC---------CC---cccccchhHHHHHHHHHHHHHHHHHHhhhccCchHHH
Q 008482 188 PTSYLLLLALLASIDPLLLMWFVRICNTN---------EG---NEKKHLNSFSLIALIVAAYLMVIIILEHIFALPFLVR 255 (564)
Q Consensus 188 ~~~~llfla~~p~~~~~~~~~~i~~~~~~---------~~---~~~~~~~~~~~~~i~~~~y~~~~~~~~~~~~~~~~~~ 255 (564)
.. ...|.. .+ .....+ ...+- ..|.....+
T Consensus 177 ------------------~~---~~~~~~~~~~~~~l~~~~~~~w~~~~-~~~w~----~~f~~~~~v------------ 218 (438)
T PRK10133 177 ------------------IL---SNVPHQSQDVLDKMTPEQLSAYKHSL-VLSVQ----TPYMIIVAI------------ 218 (438)
T ss_pred ------------------Hh---cCCcccchhhhhccChhhHHHHHHHH-HHHHH----HHHHHHHHH------------
Confidence 00 000000 00 000000 00000 001000000
Q ss_pred HHHHHHHHHHHhhhhhhhhhccCCCCCCCCcCccccCCCCCCCccchhhhccccCCCCCCCCCCCCCCCCCCCCCCCCcc
Q 008482 256 VLTLILLLLLLASPLYVAIRVQGSDSDRTSETSFCEEDELTDDPHEMHAEKMHVRQDPVGYHRLPSEPDVGTDTNDATTS 335 (564)
Q Consensus 256 ~~~~~~~~~ll~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (564)
..+++++.. ..+.+ +. + .+ ++ ++ ++
T Consensus 219 ----~~~~~~~~~----~~~~p-~~-~-~~------------~~--------------~~------~~------------ 243 (438)
T PRK10133 219 ----VLLVALLIM----LTKFP-AL-Q-SD------------NH--------------SD------AK------------ 243 (438)
T ss_pred ----HHHHHHHHH----HhcCC-CC-C-cc------------cc--------------cc------cc------------
Confidence 000000000 00010 00 0 00 00 00 00
Q ss_pred CCCCCCcHHHHhhcHHHHHHHHHHHhhhhchhheecchhHHH-h-hcCCCccchhHHHHHHHHHHHHhhhhhhhhhhhhh
Q 008482 336 LWGGDLDLLQAICTLEFWILSFAMACGMGSGLATVNNISQIG-G-SLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFL 413 (564)
Q Consensus 336 ~~~~~~t~~~~l~t~~Fwll~~~~~~~~g~gl~~i~n~~~i~-~-~~g~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~l~ 413 (564)
......+.++.+++++||...+..++..+.-....+-..+.. + ..|+++.+++...+.+.++..+||+..|++.||++
T Consensus 244 ~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g 323 (438)
T PRK10133 244 QGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFA 323 (438)
T ss_pred ccchhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 000011346889999999877766665544333333344443 4 46999888999999999999999999999999996
Q ss_pred hcccCchhHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHhhhccccchhHHHHHHhhccCchhhhhhhHhhhhhhHHH
Q 008482 414 HVKEWARPLFMVITLAAMSIGHLIIASGLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSY 493 (564)
Q Consensus 414 ~~~~~~R~~~l~~~~~l~~i~~ll~~~~~~~~l~~~~~l~G~~~G~~~~~~P~ivse~FG~k~fg~nyg~~~~a~~iG~~ 493 (564)
+| ..+.....+.++.+++.........+....+.|++.|..+...-+...|.+| |+-++-=+++.... +|..
T Consensus 324 ~~------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~glg~~~i~P~~~s~a~~~~~-~~~~~as~l~~~~~-~g~~ 395 (438)
T PRK10133 324 PH------KVLAAYALIAMALCLISAFAGGHVGLIALTLCSAFMSIQYPTIFSLGIKNLG-QDTKYGSSFIVMTI-IGGG 395 (438)
T ss_pred HH------HHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHcccc-hhhccchhHHhHHh-ccch
Confidence 43 2333333343344333322111123445678899999999888888888887 44555555554322 3443
Q ss_pred hhhhhhhhhhhhcccCCCCccccCCcccHHHHHHHHHHHHHHH
Q 008482 494 IFSVRVVGYIYDREASGEGNKCTGTHCFMLSFFIMGSATLCGS 536 (564)
Q Consensus 494 lf~~~l~g~iyD~~~~~~~~~C~G~~Cy~~af~i~~~l~v~a~ 536 (564)
+ .+.+.|.+.|..++ .+.+|++...+.+...
T Consensus 396 ~-~~~i~G~l~~~~g~-----------~~~~~~v~~~~~~~~~ 426 (438)
T PRK10133 396 I-VTPVMGFVSDAAGN-----------IPTAELIPALCFAVIF 426 (438)
T ss_pred H-HHHHHHHHHHhccc-----------hHHHHHHHHHHHHHHH
Confidence 3 34578899998653 4778876554444433
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.1e-13 Score=147.02 Aligned_cols=123 Identities=9% Similarity=0.068 Sum_probs=94.4
Q ss_pred cccccccccHHHHhhcCCCcchhhHHHHhhhhhccc-cccchhhhccccCCCCCCCccchhhhcccCcHHHHHHHHHHHH
Q 008482 28 SLYTFSIYSPALKTTQHYDQTTLDTVSVFKDIGANT-GTLSGVLYTYSTSDHSSHHPRQQRLTRLLGPWVVLLVGAIQCF 106 (564)
Q Consensus 28 ~~Y~fS~ys~~L~~~lg~sq~~~~~i~~a~~vg~~~-g~~~G~l~d~~~~~~~~~~~~~~~~~~~~GP~~~~~iG~vl~~ 106 (564)
..+.+..+-|++++++|+|..++..+.....++..+ .++.|.+.||+| +|+++++|.++..
T Consensus 18 ~~~~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g------------------~r~~l~~~~~~~~ 79 (392)
T PRK10473 18 GIDMYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSG------------------RKPVAIPGAALFI 79 (392)
T ss_pred HHHHHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhC------------------ChHHHHHHHHHHH
Confidence 334445789999999999999998777777777765 577888888765 8999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHhhhcC-CCCcceeeeehhhhhhhHHH
Q 008482 107 AGYFLMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFP-TYSGTAVGIMKGFVGLSGAI 175 (564)
Q Consensus 107 ~Gy~~~~l~~~g~i~~~~~~~l~~~~~l~G~g~~~~~ta~l~t~~k~FP-~~RG~a~Gl~~a~~GLsa~i 175 (564)
+++.++... ++++.++...++.|.+.+..+........+++| ++|+++.|+..+...+++.+
T Consensus 80 i~~~~~~~~-------~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~ 142 (392)
T PRK10473 80 IASLLCSLA-------ETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVL 142 (392)
T ss_pred HHHHHHHHh-------CcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH
Confidence 998875432 245555666677888888888888888889997 68999988876665555433
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.3e-13 Score=143.24 Aligned_cols=122 Identities=7% Similarity=-0.022 Sum_probs=96.6
Q ss_pred cccccccHHHHhhcCCCcchhhHHHHhhhhhccc-cccchhhhccccCCCCCCCccchhhhcccCcHHHHHHHHHHHHHH
Q 008482 30 YTFSIYSPALKTTQHYDQTTLDTVSVFKDIGANT-GTLSGVLYTYSTSDHSSHHPRQQRLTRLLGPWVVLLVGAIQCFAG 108 (564)
Q Consensus 30 Y~fS~ys~~L~~~lg~sq~~~~~i~~a~~vg~~~-g~~~G~l~d~~~~~~~~~~~~~~~~~~~~GP~~~~~iG~vl~~~G 108 (564)
..|.-.-|++.+++|+|.+|+..+..+..++..+ .++.|.+.||+| +|.++.+|.++..++
T Consensus 8 ~~~~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g------------------~~~~~~~~~~~~~i~ 69 (377)
T PRK11102 8 DMYLPALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFG------------------RKPVILGGTLVFALA 69 (377)
T ss_pred HHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcC------------------ChHHHHHHHHHHHHH
Confidence 4455667788889999999999887777777765 577888888765 899999999999999
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHhhhcC-CCCcceeeeehhhhhhhHHHH
Q 008482 109 YFLMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFP-TYSGTAVGIMKGFVGLSGAIL 176 (564)
Q Consensus 109 y~~~~l~~~g~i~~~~~~~l~~~~~l~G~g~~~~~ta~l~t~~k~FP-~~RG~a~Gl~~a~~GLsa~i~ 176 (564)
..++... .+++.+....++.|.+.+..+.+......+++| ++||++.|+...+.+++..+.
T Consensus 70 ~~~~~~~-------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 131 (377)
T PRK11102 70 AVACALA-------QTIDQLIYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLA 131 (377)
T ss_pred HHHHHHH-------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 8886442 235666677788889888888888888889998 569999999888777777554
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=6.6e-13 Score=141.18 Aligned_cols=119 Identities=11% Similarity=0.006 Sum_probs=85.7
Q ss_pred cccccccHHHHhhcCCCcchhhHHHHhhhhhccc-cccchhhhccccCCCCCCCccchhhhcccCcHHHHHHHHHHHHHH
Q 008482 30 YTFSIYSPALKTTQHYDQTTLDTVSVFKDIGANT-GTLSGVLYTYSTSDHSSHHPRQQRLTRLLGPWVVLLVGAIQCFAG 108 (564)
Q Consensus 30 Y~fS~ys~~L~~~lg~sq~~~~~i~~a~~vg~~~-g~~~G~l~d~~~~~~~~~~~~~~~~~~~~GP~~~~~iG~vl~~~G 108 (564)
+.+...-|++.+++|+|..|+..+..+..++..+ .++.|.+.||+| +|.++.++.++..++
T Consensus 25 ~~~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g------------------rr~~~~~~~~~~~~~ 86 (394)
T PRK11652 25 TIYVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVG------------------RRPVILVGMSIFILG 86 (394)
T ss_pred HHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcC------------------ChHHHHHHHHHHHHH
Confidence 3444455788899999999999887777777765 577888888765 999999999998888
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHhhhcC-CCCcceeeeehhhhhhhH
Q 008482 109 YFLMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFP-TYSGTAVGIMKGFVGLSG 173 (564)
Q Consensus 109 y~~~~l~~~g~i~~~~~~~l~~~~~l~G~g~~~~~ta~l~t~~k~FP-~~RG~a~Gl~~a~~GLsa 173 (564)
..++... ++++.++...++.|.+.+.....+.....+.+| ++|+.+.++...+..++.
T Consensus 87 ~~~~~~~-------~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (394)
T PRK11652 87 TLVALFA-------HSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSP 145 (394)
T ss_pred HHHHHHH-------ccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence 8775332 246667777788888877766665555667787 567877666544444433
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.2e-13 Score=143.56 Aligned_cols=174 Identities=11% Similarity=-0.046 Sum_probs=127.9
Q ss_pred cHHHHhhcHHHHHHHHHHHhhhhchhheecchhHHHhhcCCCccchhHHHHHHHHHHHHhhhhhhhhhhhhhhcccCchh
Q 008482 342 DLLQAICTLEFWILSFAMACGMGSGLATVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARP 421 (564)
Q Consensus 342 t~~~~l~t~~Fwll~~~~~~~~g~gl~~i~n~~~i~~~~g~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~R~ 421 (564)
+.++.+|+++||.+.+..++..++-..+.+..++..++.|.++...+...++..+....+.+.+|.+.||++. .
T Consensus 197 ~~~~~l~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~------~ 270 (382)
T TIGR00902 197 AFIALLKNPMNLRFLAAVCLIQGAHAAYYGFSAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSA------R 270 (382)
T ss_pred hHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCH------H
Confidence 4678999999999998888877777777778888889999998777777777777777777777777777742 3
Q ss_pred HHHHHHHHHHHHHHHHHHh-cCcchHHHHHHHHHhhhccccchhHHHHHHhhccCchhhhhhhHh-hhhhhHHHhhhhhh
Q 008482 422 LFMVITLAAMSIGHLIIAS-GLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTIT-IANPVGSYIFSVRV 499 (564)
Q Consensus 422 ~~l~~~~~l~~i~~ll~~~-~~~~~l~~~~~l~G~~~G~~~~~~P~ivse~FG~k~fg~nyg~~~-~a~~iG~~lf~~~l 499 (564)
..+.+..+...+...+... +.+..+++..++-|+++|..+......+.+. ..++.++-.++.. ++..+|.. .++.+
T Consensus 271 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~-~g~~~ 348 (382)
T TIGR00902 271 DLLLISAIACVGRWAIIGAIEAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIA-IFTAF 348 (382)
T ss_pred HHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 3455566666666555443 3333466678999999999999988889887 5666666666653 45666664 46668
Q ss_pred hhhhhhcccCCCCccccCCcccHHHHHHHHHHHHHHH
Q 008482 500 VGYIYDREASGEGNKCTGTHCFMLSFFIMGSATLCGS 536 (564)
Q Consensus 500 ~g~iyD~~~~~~~~~C~G~~Cy~~af~i~~~l~v~a~ 536 (564)
.|.+||+.+ ...|.+++.+.++++
T Consensus 349 ~G~l~~~~g-------------~~~~~~~~~~~~~~~ 372 (382)
T TIGR00902 349 AGFIYPTLG-------------AGTFVFMAIIAAAAF 372 (382)
T ss_pred HHHHHHhcc-------------HHHHHHHHHHHHHHH
Confidence 999999864 366777776666554
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=9.1e-13 Score=159.09 Aligned_cols=177 Identities=11% Similarity=0.038 Sum_probs=125.9
Q ss_pred cHHHHhhcHHHHHHHHHHHhhhhchhheecchhHHHhh-cCCCccchhHHHHHHHHHHHHhhhhhhhhhhhhhhcccCch
Q 008482 342 DLLQAICTLEFWILSFAMACGMGSGLATVNNISQIGGS-LGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWAR 420 (564)
Q Consensus 342 t~~~~l~t~~Fwll~~~~~~~~g~gl~~i~n~~~i~~~-~g~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~R 420 (564)
.++...+++.+|.+.+.+++......++...+..+.++ +|.++...+.+.+..+++..+|.++.|+++|+..+++.
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~--- 293 (1140)
T PRK06814 217 LLKYAKADKRIWLAILGISWFWLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLY--- 293 (1140)
T ss_pred HHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeee---
Confidence 46788899999999998888776666666778888876 68888888999999999999999999999987643221
Q ss_pred hHHHHHHHHHHHHHHHHHHh---------------------cCcchHHHHHHHHHhhhccccchhHHHHHHhhccCchhh
Q 008482 421 PLFMVITLAAMSIGHLIIAS---------------------GLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGT 479 (564)
Q Consensus 421 ~~~l~~~~~l~~i~~ll~~~---------------------~~~~~l~~~~~l~G~~~G~~~~~~P~ivse~FG~k~fg~ 479 (564)
+....++.++..+.+.. .....++++.+++|++.|..+...++++.+.+..++.|+
T Consensus 294 ---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~ 370 (1140)
T PRK06814 294 ---VPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRAR 370 (1140)
T ss_pred ---ehHHHHHHHHHHHHHHhcccccccccccccchhhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCccccee
Confidence 11111111111111110 122235567788999999999999999999999999999
Q ss_pred hhhhHhhhhhhHHHhhhhhhhhhhhhcccCCCCccccCCcccHHHHHHHHHHHHHHH
Q 008482 480 IFNTITIANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSFFIMGSATLCGS 536 (564)
Q Consensus 480 nyg~~~~a~~iG~~lf~~~l~g~iyD~~~~~~~~~C~G~~Cy~~af~i~~~l~v~a~ 536 (564)
.+|+..+...+|.. +++.+.|.++|...+ +...|++...++++..
T Consensus 371 v~g~~~~~~~~~~~-ig~~~~g~l~~~~~~-----------~~~~~~~~~~~~~~~~ 415 (1140)
T PRK06814 371 VIAANNVLNAAFMV-AGTIILALLQALGFS-----------IPWIILFIALANLIVA 415 (1140)
T ss_pred eeHHHHHHHHHHHH-HHHHHHHHHHHhccC-----------HHHHHHHHHHHHHHHH
Confidence 99998877776664 456678888876544 5666665554444433
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.6e-12 Score=156.66 Aligned_cols=336 Identities=10% Similarity=0.015 Sum_probs=199.5
Q ss_pred ccccHHHHhhcCCCcch--hhHHHHhhhhhcc-ccccchhhhccccCCCCCCCccchhhhcccCcHHHHHHHHHHHHHHH
Q 008482 33 SIYSPALKTTQHYDQTT--LDTVSVFKDIGAN-TGTLSGVLYTYSTSDHSSHHPRQQRLTRLLGPWVVLLVGAIQCFAGY 109 (564)
Q Consensus 33 S~ys~~L~~~lg~sq~~--~~~i~~a~~vg~~-~g~~~G~l~d~~~~~~~~~~~~~~~~~~~~GP~~~~~iG~vl~~~Gy 109 (564)
.+..+.+.+.++.++++ ...+.++..++.. ++++.|.+.||+| +|.+++++.++..++.
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~g------------------rk~~l~~~~~~~~~~~ 91 (1146)
T PRK08633 30 ILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFS------------------KNRVIRIVKLFEVGLT 91 (1146)
T ss_pred HHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhccccc------------------HHHHHHHHHHHHHHHH
Confidence 44455666667776554 3455555555554 3677888888765 8998888887766666
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHhhhcC-CCCcceeeeehhhhhhhHHHHHHHHHhhcCCCc
Q 008482 110 FLMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFP-TYSGTAVGIMKGFVGLSGAILIQVYQTFFNNKP 188 (564)
Q Consensus 110 ~~~~l~~~g~i~~~~~~~l~~~~~l~G~g~~~~~ta~l~t~~k~FP-~~RG~a~Gl~~a~~GLsa~i~s~i~~~~f~~~~ 188 (564)
++..++.. . .+++.+++..++.|.+.+....+......+++| ++||.+.|+...+..++..+-.
T Consensus 92 ~~~~~~~~--~--~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~----------- 156 (1146)
T PRK08633 92 LLIVLAYY--L--GWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGT----------- 156 (1146)
T ss_pred HHHHHHHH--H--ccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHH-----------
Confidence 65443321 1 236777788888999999999999999999997 5799999998888887765543
Q ss_pred hhHHHHHHHHHHHHhhhhheeeeeccCCCCcccccchhHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHhh
Q 008482 189 TSYLLLLALLASIDPLLLMWFVRICNTNEGNEKKHLNSFSLIALIVAAYLMVIIILEHIFALPFLVRVLTLILLLLLLAS 268 (564)
Q Consensus 189 ~~~llfla~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 268 (564)
.+...+...+.. + . ..+.........+......+ +.+ +..
T Consensus 157 -----------~l~~~l~~~~~~--~-~---~~~~~~~~~~~~~~~~~~~~----------------------~~~-~~~ 196 (1146)
T PRK08633 157 -----------ALFSFLFESVNG--N-T---PSEILGRIAPAGLVLLAVAV----------------------LGL-IFA 196 (1146)
T ss_pred -----------HHHHHHHHhhcc--c-c---ccccccchHHHHHHHHHHHH----------------------HHH-HHH
Confidence 222111110000 0 0 00000000100000000000 000 000
Q ss_pred hhhhhhhccCCCCCCCCcCccccCCCCCCCccchhhhccccCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCcHHHHhh
Q 008482 269 PLYVAIRVQGSDSDRTSETSFCEEDELTDDPHEMHAEKMHVRQDPVGYHRLPSEPDVGTDTNDATTSLWGGDLDLLQAIC 348 (564)
Q Consensus 269 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~ 348 (564)
. ..+..++. .. .. ++. ..... .......+++.++
T Consensus 197 ~---~~~~~~~~-~~---------------~~-------------~~~--~~~~~------------~~~~~~~~~~l~~ 230 (1146)
T PRK08633 197 Y---RLPKVPAA-AP---------------EV-------------FDK--KKYLF------------PKLLWRNLKLLRS 230 (1146)
T ss_pred h---cCcCCCCC-Cc---------------cc-------------ccc--ccccc------------HHHHHHHHHHHhc
Confidence 0 00000000 00 00 000 00000 0000123567888
Q ss_pred cHHHHHHHHHHHhhhhchhheecchhHHHhh-cCCCcc-chhHHHHHHHHHHHHhhhhhhhhhhhhhhcccCchhHHHHH
Q 008482 349 TLEFWILSFAMACGMGSGLATVNNISQIGGS-LGYSSF-ETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVI 426 (564)
Q Consensus 349 t~~Fwll~~~~~~~~g~gl~~i~n~~~i~~~-~g~~~~-~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~R~~~l~~ 426 (564)
++.+|.+.+.+++.......+...+..+.++ .|.+.. ..+.+.++..++..+|.+++|+++||.++++ .+.+
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~------~~~~ 304 (1146)
T PRK08633 231 DRVLWLAIIGLSYFWFISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELG------LVPL 304 (1146)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEcc------chhH
Confidence 9999988877777666665666666666654 688877 7788888899999999999999999985432 2333
Q ss_pred HHHHHHHHHHHHHh-cCcchHHHHHHHHHhhhccccchhHHHHHHhhccCchhhhhhhHhhhhhhHHH
Q 008482 427 TLAAMSIGHLIIAS-GLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSY 493 (564)
Q Consensus 427 ~~~l~~i~~ll~~~-~~~~~l~~~~~l~G~~~G~~~~~~P~ivse~FG~k~fg~nyg~~~~a~~iG~~ 493 (564)
..++++++.+++.. .....+.+..+++|+++|.......+++.+.+..++-|+.+++..+...+|..
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~ 372 (1146)
T PRK08633 305 GALGLALSLFLLPTAPSLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGML 372 (1146)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHH
Confidence 34444444443332 22234556678889999999888899999999999999999988766666653
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.7e-12 Score=136.83 Aligned_cols=181 Identities=14% Similarity=0.071 Sum_probs=117.1
Q ss_pred cHHHHhhcHHHHHHHHHHHhhhhchhheecchhHHHhhc----CCCccchhHHHHHHHHHHHHhhhhhhhhhhhhhhccc
Q 008482 342 DLLQAICTLEFWILSFAMACGMGSGLATVNNISQIGGSL----GYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKE 417 (564)
Q Consensus 342 t~~~~l~t~~Fwll~~~~~~~~g~gl~~i~n~~~i~~~~----g~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~ 417 (564)
+.+|.+|++++|.+.+..++.........+......++. +.+....+...++..+.+..+.+..|.+.||+++|
T Consensus 207 ~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~-- 284 (396)
T TIGR00882 207 LALELFRQRKFWMFVLYVVGVACVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAK-- 284 (396)
T ss_pred HHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--
Confidence 468899999999876655443322222222334444442 33334456677788888999999999999999643
Q ss_pred CchhHHHHHHHHHHHHHHHHHH-hcCcchHHHHHHHHHhhhccccchhHHHHHHhhccCchhhhhhh-HhhhhhhHHHhh
Q 008482 418 WARPLFMVITLAAMSIGHLIIA-SGLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNT-ITIANPVGSYIF 495 (564)
Q Consensus 418 ~~R~~~l~~~~~l~~i~~ll~~-~~~~~~l~~~~~l~G~~~G~~~~~~P~ivse~FG~k~fg~nyg~-~~~a~~iG~~lf 495 (564)
..+.+...+.++...+.. ...+..+++..++.|++++......-..+.+.++.|.-++.++. ......+|.. +
T Consensus 285 ----~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~-~ 359 (396)
T TIGR00882 285 ----NALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMI-F 359 (396)
T ss_pred ----hhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHH-H
Confidence 234444555555544433 23344456666777887766555555566777888877776655 3345566664 4
Q ss_pred hhhhhhhhhhcccCCCCccccCCcccHHHHHHHHHHHHHHHHHHHH
Q 008482 496 SVRVVGYIYDREASGEGNKCTGTHCFMLSFFIMGSATLCGSLAAFG 541 (564)
Q Consensus 496 ~~~l~g~iyD~~~~~~~~~C~G~~Cy~~af~i~~~l~v~a~vl~~~ 541 (564)
++.+.|+++|..+ |+.+|.+..++.++..+.+.+
T Consensus 360 ~~~l~G~l~~~~G------------~~~~f~~~~~~~~i~~~~~~~ 393 (396)
T TIGR00882 360 LSTLAGNMYDSIG------------FQGAYLVLGCIVLLFTLISVF 393 (396)
T ss_pred HHHhHHHHHHhcc------------cHHHHHHHHHHHHHHHHHHHH
Confidence 5557999999865 899999988888777766543
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.8e-12 Score=139.40 Aligned_cols=158 Identities=16% Similarity=0.071 Sum_probs=104.6
Q ss_pred cHHHHhhcHHHHHHHHHHHhhhhchhheecchhHHH-hh-cCCCccchhHHHHHHHHHHHHhhhhhhhhhhhhhhcccCc
Q 008482 342 DLLQAICTLEFWILSFAMACGMGSGLATVNNISQIG-GS-LGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWA 419 (564)
Q Consensus 342 t~~~~l~t~~Fwll~~~~~~~~g~gl~~i~n~~~i~-~~-~g~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~ 419 (564)
.+++.++++.||.+.+..++....... .+...+.. +. .+ ++...+...++..+...++.+++|+++||+++|
T Consensus 214 ~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~---- 287 (437)
T TIGR00792 214 IFKALFKNDQLLILCLAYLFYNLAFNI-KNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRK---- 287 (437)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHHH-HcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH----
Confidence 457888999999987776665443322 22232222 22 23 333455667777899999999999999999653
Q ss_pred hhHHHHHHHHHHHHHHHHHHh--cCcchHHHHHHHHHhhhccccchhHHHHHHh-------hccCchhhhhhhHhhhhhh
Q 008482 420 RPLFMVITLAAMSIGHLIIAS--GLPGALYAGSILVGVCYGSQWSLMPTIASEI-------FGVLQMGTIFNTITIANPV 490 (564)
Q Consensus 420 R~~~l~~~~~l~~i~~ll~~~--~~~~~l~~~~~l~G~~~G~~~~~~P~ivse~-------FG~k~fg~nyg~~~~a~~i 490 (564)
..+.....+.+++.+++.. +....+++..++.|++.|..+....++++|. .|.|+-|..+|+.....-+
T Consensus 288 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~ 365 (437)
T TIGR00792 288 --ILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKL 365 (437)
T ss_pred --HHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHH
Confidence 2233444444444443322 1222345566788999999999999998887 4677889999988776666
Q ss_pred HHHhhhhhhhhhhhhccc
Q 008482 491 GSYIFSVRVVGYIYDREA 508 (564)
Q Consensus 491 G~~lf~~~l~g~iyD~~~ 508 (564)
|.. +++.+.|.+.|..+
T Consensus 366 g~~-lg~~i~g~ll~~~G 382 (437)
T TIGR00792 366 GQA-LAGFLVGLILGIIG 382 (437)
T ss_pred HHH-HHHHHHHHHHHHcC
Confidence 664 46667888888754
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.52 E-value=7.2e-13 Score=138.79 Aligned_cols=326 Identities=10% Similarity=-0.020 Sum_probs=189.9
Q ss_pred ccHHHHhhcCCCcchhhHHHHhhhhhccccccchhhhccccCCCCCCCccchhhhcccCcHHH-HHHHHHHHHHHHHHHH
Q 008482 35 YSPALKTTQHYDQTTLDTVSVFKDIGANTGTLSGVLYTYSTSDHSSHHPRQQRLTRLLGPWVV-LLVGAIQCFAGYFLMW 113 (564)
Q Consensus 35 ys~~L~~~lg~sq~~~~~i~~a~~vg~~~g~~~G~l~d~~~~~~~~~~~~~~~~~~~~GP~~~-~~iG~vl~~~Gy~~~~ 113 (564)
-.|.+.+++|+|.+|+..+++...... ..++.|.+.||++ .+|+|.|.. ++.+.++.++....+.
T Consensus 10 ~~~~~~~~~g~s~~~~g~~~~~~~~~~-~~~~~g~~~Dr~~-------------~~~~Grr~~~l~~~~~~~~~~~~~l~ 75 (356)
T TIGR00901 10 TLPYWLRSKNVSLKTIGFFSLVGLPYS-LKFLWSPLVDTVY-------------LPFFGRRRSWLVLTQVLLLSLLLILS 75 (356)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHH-HHHHHHHHHhccc-------------CCCCCccHHHHHHHHHHHHHHHHHHH
Confidence 346677889999999997765533332 4778999999874 224567776 4556666666554432
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHhhhcC-CCCcceeeeehhhhhhhHHHHHHHHHhhcCCCchhHH
Q 008482 114 ASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFP-TYSGTAVGIMKGFVGLSGAILIQVYQTFFNNKPTSYL 192 (564)
Q Consensus 114 l~~~g~i~~~~~~~l~~~~~l~G~g~~~~~ta~l~t~~k~FP-~~RG~a~Gl~~a~~GLsa~i~s~i~~~~f~~~~~~~l 192 (564)
. . .+..+.+.+....++.+.+.+..+.+.-.-..+++| ++||.+.|+...++.++..+...+.
T Consensus 76 ~--~--~~~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~------------ 139 (356)
T TIGR00901 76 F--L--VPSTDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLA------------ 139 (356)
T ss_pred c--C--CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHH------------
Confidence 1 1 111345666666667778888888888888889996 6899999999888888876643221
Q ss_pred HHHHHHHHHHhhhhheeeeeccCCCCcccccchhHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHhhhhhh
Q 008482 193 LLLALLASIDPLLLMWFVRICNTNEGNEKKHLNSFSLIALIVAAYLMVIIILEHIFALPFLVRVLTLILLLLLLASPLYV 272 (564)
Q Consensus 193 lfla~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~p~~~ 272 (564)
.. +....+.+ +..+. .........++..++ ......
T Consensus 140 ----------~~----l~~~~g~~--~~~~~--~wr~~f~i~ai~~l~--------------------------~~~~~~ 175 (356)
T TIGR00901 140 ----------LV----LASPEFAN--TGLIT--LWGYIFFWTALLILP--------------------------GLLVTL 175 (356)
T ss_pred ----------HH----Hhhhcccc--ccccc--ccHHHHHHHHHHHHH--------------------------HHHHHH
Confidence 11 11111111 00000 001100011100000 000000
Q ss_pred hhhccCCCCCCCCcCccccCCCCCCCccchhhhccccCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCcHHHHhhcHH-
Q 008482 273 AIRVQGSDSDRTSETSFCEEDELTDDPHEMHAEKMHVRQDPVGYHRLPSEPDVGTDTNDATTSLWGGDLDLLQAICTLE- 351 (564)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~t~~- 351 (564)
... ++. ++. .+ +++ +.. .+ ...+.++.++++.
T Consensus 176 ~~~--~e~-~~~-------------~~--------------~~~-----~~~----------~~--~~~~~~~~~~~~~~ 208 (356)
T TIGR00901 176 FLA--KEP-QED-------------AS--------------VPK-----PLT----------QA--VLKPIREFFQRKNM 208 (356)
T ss_pred Hhc--cCC-Ccc-------------cc--------------cch-----hHH----------HH--HHHHHHHHHHhcCc
Confidence 000 000 000 00 000 000 00 0114566777765
Q ss_pred --HHHHHHHHHhhhhchhheecchhHHHhhcCCCccchhHHHHHHH-HHHHHhhhhhhhhhhhhhhcccCchhHHHHHHH
Q 008482 352 --FWILSFAMACGMGSGLATVNNISQIGGSLGYSSFETSSLISLWS-IWNFLGRFGAGYVSDYFLHVKEWARPLFMVITL 428 (564)
Q Consensus 352 --Fwll~~~~~~~~g~gl~~i~n~~~i~~~~g~~~~~aa~~Vsl~s-i~n~~GRl~~G~lsD~l~~~~~~~R~~~l~~~~ 428 (564)
+|.+.+..++.......+.....+..++.|+++++.+...++.+ +...+|.+++|+++||+++|+ .+....
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~------~l~~~~ 282 (356)
T TIGR00901 209 IQALLLLLLIVLYKLGDSAATVLTTLFLLDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILY------ALLLFG 282 (356)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHH------HHHHHH
Confidence 77776666655444445556677777888998877777776666 567899999999999996533 233344
Q ss_pred HHHHHHHHHHH---hcC-------c--chHHHHHHHHHhhhccccchhHHHHHHhhccCchhhhhhhHhhh
Q 008482 429 AAMSIGHLIIA---SGL-------P--GALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIA 487 (564)
Q Consensus 429 ~l~~i~~ll~~---~~~-------~--~~l~~~~~l~G~~~G~~~~~~P~ivse~FG~k~fg~nyg~~~~a 487 (564)
++.+++..++. ... + ..+..+.++.++++|..+....++..|.+-.++-|+.+|+....
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~ 353 (356)
T TIGR00901 283 IVQALTNAGFVWLASNGHHDGITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSL 353 (356)
T ss_pred HHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHH
Confidence 44444433221 111 1 22444556779999999999999999999999999999987654
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=5.4e-12 Score=134.11 Aligned_cols=174 Identities=11% Similarity=-0.001 Sum_probs=115.9
Q ss_pred cHHHHhhcHHHHHHHHHHHhhhhchhheecchhHHHhhcCCCccchhHHHHHHHHHHHHhhhhhhhhhhhhhhcccCchh
Q 008482 342 DLLQAICTLEFWILSFAMACGMGSGLATVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARP 421 (564)
Q Consensus 342 t~~~~l~t~~Fwll~~~~~~~~g~gl~~i~n~~~i~~~~g~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~R~ 421 (564)
+.++.+|++.||.+.+..++....-..+.+...+..++.|+++.+.+...++..+.+..+++..|.+.||.+ +.
T Consensus 197 ~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~------~~ 270 (382)
T PRK11128 197 AWKALLKEPTVWRFLLCVSLLQGSHAAYYGFSAIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWS------AR 270 (382)
T ss_pred hHHHHHcChhHHHHHHHHHHHHHHhHhHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCC------HH
Confidence 568999999999887766665444444555667777888988777788888888888888888888888874 33
Q ss_pred HHHHHHHHHHHHHHHHHH-hcCcchHHHHHHHHHhhhccccchhHHHHHHhhccCchhhhhhhHh-hhhhhHHHhhhhhh
Q 008482 422 LFMVITLAAMSIGHLIIA-SGLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTIT-IANPVGSYIFSVRV 499 (564)
Q Consensus 422 ~~l~~~~~l~~i~~ll~~-~~~~~~l~~~~~l~G~~~G~~~~~~P~ivse~FG~k~fg~nyg~~~-~a~~iG~~lf~~~l 499 (564)
..+.....+.+++.+++. .+.+..+++..++.|+++|......-..+.+.- ..+.++.++... ++..+|.. +++.+
T Consensus 271 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~-ig~~i 348 (382)
T PRK11128 271 DLLLLSAICGVVRWGLMGSTTALPWLIVIQILHCGTFTVCHLAAMRYIAARP-GSEVIRLQALYSALAMGGSIA-IMTVL 348 (382)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-HhhhHHHHHHHHHHHHHHHHH-HHHHH
Confidence 345555556666554443 233344666778889998876555555555553 344566667654 44445543 46668
Q ss_pred hhhhhhcccCCCCccccCCcccHHHHHHHHHHHHHHH
Q 008482 500 VGYIYDREASGEGNKCTGTHCFMLSFFIMGSATLCGS 536 (564)
Q Consensus 500 ~g~iyD~~~~~~~~~C~G~~Cy~~af~i~~~l~v~a~ 536 (564)
+|.++|+.+ ...|.+.+++.++++
T Consensus 349 ~G~l~~~~g-------------~~~~~~~~~~~~~~~ 372 (382)
T PRK11128 349 SGFLYQHLG-------------AGVFWVMALVALPAL 372 (382)
T ss_pred HHHHHHhcc-------------HHHHHHHHHHHHHHH
Confidence 999999864 245666655554443
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.52 E-value=4.1e-12 Score=140.19 Aligned_cols=354 Identities=13% Similarity=0.073 Sum_probs=199.1
Q ss_pred HhhcCCCcchhhHHHHhhhhhccccccchhhhccccCCCCCCCccchhhhcccCcHHH-HHHHHHHHHHHHHHHHHHHhc
Q 008482 40 KTTQHYDQTTLDTVSVFKDIGANTGTLSGVLYTYSTSDHSSHHPRQQRLTRLLGPWVV-LLVGAIQCFAGYFLMWASVVG 118 (564)
Q Consensus 40 ~~~lg~sq~~~~~i~~a~~vg~~~g~~~G~l~d~~~~~~~~~~~~~~~~~~~~GP~~~-~~iG~vl~~~Gy~~~~l~~~g 118 (564)
.++.|.|.+|+..++.... .-.+.++.|.+.||+.. +|.|.|.. +.++.++..++...+... .
T Consensus 39 l~~~g~~~~~ig~~~~~~~-~~~~~~l~gpl~Dr~~~-------------~~~Grrr~~ll~~~i~~~~~~~~~a~~--~ 102 (491)
T PRK11010 39 MTVENIDLKTIGFFSLVGQ-AYVFKFLWSPLMDRYTP-------------PFLGRRRGWLLATQLLLLVAIAAMGFL--E 102 (491)
T ss_pred HHhCCCCHHHHHHHHHHHH-HHHHHHHHHHHHHcccc-------------cCCCCchHHHHHHHHHHHHHHHHHHHc--C
Confidence 3455888777776532222 22356788999998731 12245543 556666666666553221 1
Q ss_pred CCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHhhhcC-CCCcceeeeehhhhhhhHHHHHHHHHhhcCCCchhHHHHHHH
Q 008482 119 LIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFP-TYSGTAVGIMKGFVGLSGAILIQVYQTFFNNKPTSYLLLLAL 197 (564)
Q Consensus 119 ~i~~~~~~~l~~~~~l~G~g~~~~~ta~l~t~~k~FP-~~RG~a~Gl~~a~~GLsa~i~s~i~~~~f~~~~~~~llfla~ 197 (564)
+..+++.+....++.+.+.+..+.+.-....++|| ++||.+.|+...++.++..+-..+.
T Consensus 103 --~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~----------------- 163 (491)
T PRK11010 103 --PGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLA----------------- 163 (491)
T ss_pred --CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHH-----------------
Confidence 12356666667778888888889898889999997 7899999999988888875543111
Q ss_pred HHHHHhhhhheeee-eccCCCCcccccchhHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHhhhhhhhhhc
Q 008482 198 LASIDPLLLMWFVR-ICNTNEGNEKKHLNSFSLIALIVAAYLMVIIILEHIFALPFLVRVLTLILLLLLLASPLYVAIRV 276 (564)
Q Consensus 198 ~p~~~~~~~~~~i~-~~~~~~~~~~~~~~~~~~~~i~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~p~~~~~~~ 276 (564)
.. +.. ..+.+ . .|.. .++..++ .++ ... ..++
T Consensus 164 -----~~----l~~~~~GWr-----~---~f~i----~a~l~ll---------------------~~l-~~~----~~~e 196 (491)
T PRK11010 164 -----LW----LADRYLGWQ-----G---MYWL----MAALLIP---------------------CII-ATL----LAPE 196 (491)
T ss_pred -----HH----HHhcccCHH-----H---HHHH----HHHHHHH---------------------HHH-HHH----hcCC
Confidence 11 111 00111 0 0111 0000000 000 000 0010
Q ss_pred cCCCCCCCCcCccccCCCCCCCccchhhhccccCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCcHHHHhhcHHHHHHH
Q 008482 277 QGSDSDRTSETSFCEEDELTDDPHEMHAEKMHVRQDPVGYHRLPSEPDVGTDTNDATTSLWGGDLDLLQAICTLEFWILS 356 (564)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~t~~Fwll~ 356 (564)
+ ++.+ + ++ + +.. + ....++++.++++++|.+.
T Consensus 197 ~-~~~~--~------------~~--------------~-------~~~-----------~-~~~~~l~~~~~~~~~~~~l 228 (491)
T PRK11010 197 P-TDTI--P------------VP--------------K-------TLE-----------Q-AVVAPLRDFFGRNNAWLIL 228 (491)
T ss_pred C-cccc--c------------cc--------------c-------chh-----------h-hHHHHHHHHHcCcCHHHHH
Confidence 0 0000 0 00 0 000 0 0012456788888888766
Q ss_pred HHHHhhhhchhheecchhHHH-hhcCCCccchhHHHH-HHHHHHHHhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHH-
Q 008482 357 FAMACGMGSGLATVNNISQIG-GSLGYSSFETSSLIS-LWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSI- 433 (564)
Q Consensus 357 ~~~~~~~g~gl~~i~n~~~i~-~~~g~~~~~aa~~Vs-l~si~n~~GRl~~G~lsD~l~~~~~~~R~~~l~~~~~l~~i- 433 (564)
...++.........+...++. +..|+++++.+...+ +..++..+|.++.|+++||+++|+ .+.+..+++++
T Consensus 229 l~~~l~~~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~------~l~i~~~l~~l~ 302 (491)
T PRK11010 229 LLIVLYKLGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFR------ALMIFGILQGVS 302 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH------HHHHHHHHHHHH
Confidence 554433222222223345554 457998887777764 555788999999999999997532 22222222222
Q ss_pred --HHHHHHhcCcc--hHHHHHHHHHhhhccccchhHHHHHHhhccCchhhhhhhHhhhhhhHHHhhhhhhhhhhhhcccC
Q 008482 434 --GHLIIASGLPG--ALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREAS 509 (564)
Q Consensus 434 --~~ll~~~~~~~--~l~~~~~l~G~~~G~~~~~~P~ivse~FG~k~fg~nyg~~~~a~~iG~~lf~~~l~g~iyD~~~~ 509 (564)
.++++....+. .+.....+..++.|..++.+.++..++...+.-++.||+......+|..+. +.+.|.++|..+
T Consensus 303 ~l~~~~l~~~~~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~-~~~~G~l~~~~G- 380 (491)
T PRK11010 303 NAGYWLLSITDKNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYV-GPVAGWFVEAHG- 380 (491)
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhC-
Confidence 22222222222 223334454444554445555666677766677888888887778887644 457999999764
Q ss_pred CCCccccCCcccHHHHHHHHHHHHHHHHHHHHH
Q 008482 510 GEGNKCTGTHCFMLSFFIMGSATLCGSLAAFGL 542 (564)
Q Consensus 510 ~~~~~C~G~~Cy~~af~i~~~l~v~a~vl~~~l 542 (564)
|...|.+..++++++.++....
T Consensus 381 -----------~~~~f~~~~~~~l~~l~~~~~~ 402 (491)
T PRK11010 381 -----------WPTFYLFSVAAAVPGLLLLLVC 402 (491)
T ss_pred -----------hHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999998887666554
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.49 E-value=3e-12 Score=137.03 Aligned_cols=347 Identities=12% Similarity=0.009 Sum_probs=196.4
Q ss_pred HHhhcCCCcchhhHHHHhhhhhccccccchhhhccccCCCCCCCccchhhhcccCc-HHHHHHHHHHHHHHHHHHHHHHh
Q 008482 39 LKTTQHYDQTTLDTVSVFKDIGANTGTLSGVLYTYSTSDHSSHHPRQQRLTRLLGP-WVVLLVGAIQCFAGYFLMWASVV 117 (564)
Q Consensus 39 L~~~lg~sq~~~~~i~~a~~vg~~~g~~~G~l~d~~~~~~~~~~~~~~~~~~~~GP-~~~~~iG~vl~~~Gy~~~~l~~~ 117 (564)
|++ .|+|.+|+..+...... ..+.++.|.+.||++. |++|. |..+.++.+...+...++...
T Consensus 26 l~~-~g~~~~~ig~~~~~~~~-~~~~~l~g~~~Dr~~~-------------~~~g~rr~~l~~~~~~~~l~~~~l~~~-- 88 (402)
T PRK11902 26 MTV-EGLDIQTIGFFSLVGQA-YIFKFLWAPLMDRYTP-------------PLLGRRRGWLLLTQVGLAASIAAMAFC-- 88 (402)
T ss_pred HHH-cCCCHHHHHHHHHHHHH-HHHHHHHHHHHHcccc-------------cCCCcchhHHHHHHHHHHHHHHHHHhc--
Confidence 554 59999999877655554 3567889999998731 11133 346677777777666664332
Q ss_pred cCCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHhhhcCC-CCcceeeeehhhhhhhHHHHHHHHHhhcCCCchhHHHHHH
Q 008482 118 GLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFPT-YSGTAVGIMKGFVGLSGAILIQVYQTFFNNKPTSYLLLLA 196 (564)
Q Consensus 118 g~i~~~~~~~l~~~~~l~G~g~~~~~ta~l~t~~k~FP~-~RG~a~Gl~~a~~GLsa~i~s~i~~~~f~~~~~~~llfla 196 (564)
.. ..++|.+..+.++.+...+..+.+.-....+++|+ +||++.++...+++++..+-..+.
T Consensus 89 ~~--~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~---------------- 150 (402)
T PRK11902 89 PP--HAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLA---------------- 150 (402)
T ss_pred Cc--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHH----------------
Confidence 11 13467666676777778888888888888999985 599999999988888875543211
Q ss_pred HHHHHHhhhhheeeee-ccCCCCcccccchhHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHhhhhhhhhh
Q 008482 197 LLASIDPLLLMWFVRI-CNTNEGNEKKHLNSFSLIALIVAAYLMVIIILEHIFALPFLVRVLTLILLLLLLASPLYVAIR 275 (564)
Q Consensus 197 ~~p~~~~~~~~~~i~~-~~~~~~~~~~~~~~~~~~~i~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~p~~~~~~ 275 (564)
..+ .+. .+.+ .. |. ..++..++. .... ...+
T Consensus 151 -----~~l-----~~~~~gw~-----~~---f~----i~a~~~l~~-------------------------~l~~-~~~~ 182 (402)
T PRK11902 151 -----LWL-----ADRVLGWG-----NT---YL----LMAGLMLAG-------------------------ALTT-LWAP 182 (402)
T ss_pred -----HHH-----HhcccCHH-----HH---HH----HHHHHHHHH-------------------------HHHH-HhcC
Confidence 100 110 0110 00 11 111000000 0000 0001
Q ss_pred ccCCCCCCCCcCccccCCCCCCCccchhhhccccCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCcHHHHhhcHHHHHH
Q 008482 276 VQGSDSDRTSETSFCEEDELTDDPHEMHAEKMHVRQDPVGYHRLPSEPDVGTDTNDATTSLWGGDLDLLQAICTLEFWIL 355 (564)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~t~~Fwll 355 (564)
.+ + +++ ++ + ++. ++....++++.+|++.||.+
T Consensus 183 e~-~--~~~-------------~~--------------~-------~~~-----------~~~~~~~~~~l~~~~~~~~~ 214 (402)
T PRK11902 183 EP-E--VPA-------------RP--------------P-------RSL-----------GEAVVGPLRDFFSRRGAWAL 214 (402)
T ss_pred CC-c--ccc-------------cc--------------c-------chh-----------HHHHHHHHHHHHhCcCHHHH
Confidence 00 0 000 00 0 000 00001246789999999987
Q ss_pred HHHHHhhhhchhheecchhH-HHhhcCCCccchhHHHHHHHH-HHHHhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHH
Q 008482 356 SFAMACGMGSGLATVNNISQ-IGGSLGYSSFETSSLISLWSI-WNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSI 433 (564)
Q Consensus 356 ~~~~~~~~g~gl~~i~n~~~-i~~~~g~~~~~aa~~Vsl~si-~n~~GRl~~G~lsD~l~~~~~~~R~~~l~~~~~l~~i 433 (564)
.+..++.......+.....+ +.++.|+++++.+...+..++ ...+|.++.|++.||+++|+ .+.+...+..+
T Consensus 215 l~~~~l~~~~~~~~~~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~------~l~~~~~~~~l 288 (402)
T PRK11902 215 LLLIVLYKLGDAFAGSLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYR------SLMLFGVLQAV 288 (402)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHH------HHHHHHHHHHH
Confidence 77655543322221112223 445578887777776666554 57899999999999996432 23333333333
Q ss_pred HH---HHHHhc-Cc-chHHHHH----HHHHhhhccccchhHHHHHHhhccCchhhhhhhHhhhhhhHHHhhhhhhhhhhh
Q 008482 434 GH---LIIASG-LP-GALYAGS----ILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIY 504 (564)
Q Consensus 434 ~~---ll~~~~-~~-~~l~~~~----~l~G~~~G~~~~~~P~ivse~FG~k~fg~nyg~~~~a~~iG~~lf~~~l~g~iy 504 (564)
.. .++... .+ ..+++.. +..|+.++........++.+.++.++++. ++. ...+|..+.++ +.|.++
T Consensus 289 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~l~~~~~~~-~~G~l~ 363 (402)
T PRK11902 289 SNLGYWVLAVTPKHLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFSATQYAL-LSA---LASVGRVYVGP-TSGYLV 363 (402)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHH-HHH---HHHHHHHHHHH-HHHHHH
Confidence 22 222221 12 2233332 34567788888999999999999777654 222 23344433333 699999
Q ss_pred hcccCCCCccccCCcccHHHHHHHHHHHHHHHHHH
Q 008482 505 DREASGEGNKCTGTHCFMLSFFIMGSATLCGSLAA 539 (564)
Q Consensus 505 D~~~~~~~~~C~G~~Cy~~af~i~~~l~v~a~vl~ 539 (564)
|..+ |+..|.+.+.++++++++.
T Consensus 364 ~~~G------------~~~~f~~~~~~~~~~~~~~ 386 (402)
T PRK11902 364 EAYG------------WPGFYLMTVVIALPGLALL 386 (402)
T ss_pred HHhC------------hHHHHHHHHHHHHHHHHHH
Confidence 9976 6888888887777765443
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.1e-11 Score=132.23 Aligned_cols=152 Identities=12% Similarity=0.035 Sum_probs=100.2
Q ss_pred eecchhHHHh-hcCCCccchhHHHHHHHHHHHHhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHH-hcCcchH
Q 008482 369 TVNNISQIGG-SLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIA-SGLPGAL 446 (564)
Q Consensus 369 ~i~n~~~i~~-~~g~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~R~~~l~~~~~l~~i~~ll~~-~~~~~~l 446 (564)
+......+.+ ..|+++.+++...++..+...++++++|+++||+++|+ .+........+...... .+.+..+
T Consensus 235 ~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~------~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (393)
T PRK15011 235 YIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRF------LMRVAAVAGVCFYAGMLMAHSPAIL 308 (393)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHH------HHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 4445665664 46888777777788878888899999999999997542 12222222222222221 2223233
Q ss_pred HHHHHHHHhhhccccchhHHHHHHhhccCchhhhhhhHhhhhhhHHHhhhhhhhhhhhhcccCCCCccccCCcccHHHHH
Q 008482 447 YAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSFF 526 (564)
Q Consensus 447 ~~~~~l~G~~~G~~~~~~P~ivse~FG~k~fg~nyg~~~~a~~iG~~lf~~~l~g~iyD~~~~~~~~~C~G~~Cy~~af~ 526 (564)
.+...+.++++|...+..+....|.+. ++-|+..++......+|.. +++.+.|.++|..+ |+..|.
T Consensus 309 l~~~~l~~~~~g~~~~~~~~~~~~~~p-~~~g~~~~~~~~~~~lg~~-~g~~l~G~i~~~~g------------~~~~~~ 374 (393)
T PRK15011 309 LGLQLLNAIYIGILGGIGMLYFQDLMP-GQAGSATTLYTNTSRVGWI-IAGSLAGIVAEIWN------------YHAVFW 374 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCC-CCcchHHHHHHHHHHHHHH-HHHHHHHHHHHHhh------------hHHHHH
Confidence 444556677777777778888899996 5588888876655556663 46667999999754 788888
Q ss_pred HHHHHHHHHHHHHH
Q 008482 527 IMGSATLCGSLAAF 540 (564)
Q Consensus 527 i~~~l~v~a~vl~~ 540 (564)
+..+++++++++.+
T Consensus 375 ~~~~~~~~~~~~~~ 388 (393)
T PRK15011 375 FALVMIIATLFCLL 388 (393)
T ss_pred HHHHHHHHHHHHHH
Confidence 88777777664444
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.45 E-value=6.2e-12 Score=137.55 Aligned_cols=367 Identities=13% Similarity=0.084 Sum_probs=234.1
Q ss_pred HhhcCCCcchhhHHHHhhhhhcccc-ccchhhhccccCCCCCCCccchhhhcccCcHHHHHHHHHHHHHHHHHHHHHHhc
Q 008482 40 KTTQHYDQTTLDTVSVFKDIGANTG-TLSGVLYTYSTSDHSSHHPRQQRLTRLLGPWVVLLVGAIQCFAGYFLMWASVVG 118 (564)
Q Consensus 40 ~~~lg~sq~~~~~i~~a~~vg~~~g-~~~G~l~d~~~~~~~~~~~~~~~~~~~~GP~~~~~iG~vl~~~Gy~~~~l~~~g 118 (564)
+.+++||++|-+.+-.+...|...+ +|+|.+.||+| +|.++..++++..++-++.=++..-
T Consensus 65 ~~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G------------------~r~v~~~~~~~sa~~t~l~P~aa~~ 126 (466)
T KOG2532|consen 65 AGEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFG------------------ARRVFFISGLISALLTLLTPLAASI 126 (466)
T ss_pred CceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcC------------------chHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5679999999999988889998875 57898989875 9999999999999999886444332
Q ss_pred CCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHhhhcC-CCCcceeeeehhhhhhhHHHHHHHHHhhcCCCchhHHHHHHH
Q 008482 119 LIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFP-TYSGTAVGIMKGFVGLSGAILIQVYQTFFNNKPTSYLLLLAL 197 (564)
Q Consensus 119 ~i~~~~~~~l~~~~~l~G~g~~~~~ta~l~t~~k~FP-~~RG~a~Gl~~a~~GLsa~i~s~i~~~~f~~~~~~~llfla~ 197 (564)
+++.+++.=++.|.+.+..+.+.-.-..||.| ++|++..+++.++.-+|..+-
T Consensus 127 -----~~~~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~--------------------- 180 (466)
T KOG2532|consen 127 -----GFYLLLVLRFLQGLGQGVLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIIT--------------------- 180 (466)
T ss_pred -----cchhhHHHHHHhHHHHhHHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHH---------------------
Confidence 23455677889999999999999999999997 789999999999998877553
Q ss_pred HHHHHhhhhheeeeeccCCCCcccccchhHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHhhhhhhhhhcc
Q 008482 198 LASIDPLLLMWFVRICNTNEGNEKKHLNSFSLIALIVAAYLMVIIILEHIFALPFLVRVLTLILLLLLLASPLYVAIRVQ 277 (564)
Q Consensus 198 ~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~p~~~~~~~~ 277 (564)
.|....+ +.. ..+.+ ..|+.+. +...+..+ +-... ...+
T Consensus 181 mp~sg~l-c~s---~~GW~-----sifY~~g---~~g~i~~~--------------------------~w~~~---~~d~ 219 (466)
T KOG2532|consen 181 MPVSGLL-CES---SLGWP-----SIFYVFG---IVGLIWFI--------------------------LWFLF---YSDS 219 (466)
T ss_pred HHhHHHH-hcc---CCCCc-----hHHHHHH---HHHHHHHH--------------------------HHHHH---hcCC
Confidence 2333211 111 11221 2221111 11111000 00000 0111
Q ss_pred CCCCCCCCcCccccCCCCCCCccchhhhccccCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCcHHHHhhcHHHHHHHH
Q 008482 278 GSDSDRTSETSFCEEDELTDDPHEMHAEKMHVRQDPVGYHRLPSEPDVGTDTNDATTSLWGGDLDLLQAICTLEFWILSF 357 (564)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~t~~Fwll~~ 357 (564)
++ ++. .. +++|+...++. ..+ ++.+++.+..++++++++.+|.+|+
T Consensus 220 P~--~h~----------~i-----s~~El~~I~~~---------k~~--------~~~~~~~~vP~~~i~ts~~vwai~~ 265 (466)
T KOG2532|consen 220 PS--KHP----------NI-----SEKELKYIEKG---------KSE--------AHVKKKPPVPYKAILTSPPVWAIWI 265 (466)
T ss_pred cc--cCC----------CC-----CHHHHHHHHhc---------ccc--------cccCCCCCCCHHHHHcCHHHHHHHH
Confidence 11 000 00 00011000000 000 0001113668899999999999999
Q ss_pred HHHhhhhchhheecchhHHHhh-cCCCccchhHHHHHHHHHHHHhhhhhhhhhhhhhhcccCc----hhHHHHHHHHHHH
Q 008482 358 AMACGMGSGLATVNNISQIGGS-LGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWA----RPLFMVITLAAMS 432 (564)
Q Consensus 358 ~~~~~~g~gl~~i~n~~~i~~~-~g~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~----R~~~l~~~~~l~~ 432 (564)
+-++..-.-..++..++...++ ++++-.+.+.+.++=-+...+-++++|.++||+.+| ..+ |..+-.+.+...+
T Consensus 266 ~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~-~ls~t~~rkifn~i~~~~~a 344 (466)
T KOG2532|consen 266 SAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFR-ILSETTVRKIFNTIAFGGPA 344 (466)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc-cCchHhHHHHHHhHHHHHHH
Confidence 9999977777777788888876 799988999999999999999999999999999875 332 4445555555566
Q ss_pred HHHHHHHhcC--cc-----hHHHHHHHHHhhhccccchhHHHHHHhhccCchhhhhhhHhhhhhhHHHhhhhhhhhhhhh
Q 008482 433 IGHLIIASGL--PG-----ALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYD 505 (564)
Q Consensus 433 i~~ll~~~~~--~~-----~l~~~~~l~G~~~G~~~~~~P~ivse~FG~k~fg~nyg~~~~a~~iG~~lf~~~l~g~iyD 505 (564)
+.++.+.... .. .+.++..+.|+..+|... ....-.++|-+...|+......+..+ ++|.+.|.+-.
T Consensus 345 i~l~~l~~~~~~~~~~a~~~l~~~~~~~g~~~~Gf~~-----~~~~~apq~a~~l~g~~~~~~~~~~~-~~P~~vg~~~~ 418 (466)
T KOG2532|consen 345 VFLLVLAFTSDEHRLLAVILLTIAIGLSGFNISGFYK-----NHQDIAPQHAGFVMGIINFVGALAGF-IAPLLVGIIVT 418 (466)
T ss_pred HHHHeeeecCCCcchHHHHHHHHHHHHcccchhhhHh-----hhhhccchHHHHHHHHHHHHHHHHHH-HHHHheeeEeC
Confidence 5555443222 11 122233455555555431 11111577888888888776666664 56777887763
Q ss_pred cccCCCCccccCCcccHHHHHHHHHHHHHHHHHHHH
Q 008482 506 REASGEGNKCTGTHCFMLSFFIMGSATLCGSLAAFG 541 (564)
Q Consensus 506 ~~~~~~~~~C~G~~Cy~~af~i~~~l~v~a~vl~~~ 541 (564)
+.+ .+=-+..|++.+++.+++.+.-.+
T Consensus 419 -~~t--------~~eW~~VF~i~a~i~~~~~i~f~~ 445 (466)
T KOG2532|consen 419 -DNT--------REEWRIVFLIAAGILIVGNIIFLF 445 (466)
T ss_pred -CCC--------HHHHHHHHHHHHHHHHHhchheeE
Confidence 111 112688999999888888744333
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.1e-11 Score=130.16 Aligned_cols=114 Identities=15% Similarity=0.079 Sum_probs=85.3
Q ss_pred HHHHhhcCCCcchhhHHHHhhhhhccc-cccchhhhccccCCCCCCCccchhhhcccCcHHHHHHHHHHHHHHHHHHHHH
Q 008482 37 PALKTTQHYDQTTLDTVSVFKDIGANT-GTLSGVLYTYSTSDHSSHHPRQQRLTRLLGPWVVLLVGAIQCFAGYFLMWAS 115 (564)
Q Consensus 37 ~~L~~~lg~sq~~~~~i~~a~~vg~~~-g~~~G~l~d~~~~~~~~~~~~~~~~~~~~GP~~~~~iG~vl~~~Gy~~~~l~ 115 (564)
|++.+++|.++++.+.......+|... .++.|.+.||+| +|+++++|.++..++..+...
T Consensus 40 ~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G------------------rr~~l~~~~~~~~~~~~~~~~- 100 (413)
T PRK15403 40 INVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIG------------------RRPVLITGALIFTLACAATLF- 100 (413)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcC------------------chHHHHHHHHHHHHHHHHHHH-
Confidence 467789999999998665555566654 567888888765 999999999888888876432
Q ss_pred HhcCCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHhhhcCC-CCcceeeeehhhhhhhHHH
Q 008482 116 VVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFPT-YSGTAVGIMKGFVGLSGAI 175 (564)
Q Consensus 116 ~~g~i~~~~~~~l~~~~~l~G~g~~~~~ta~l~t~~k~FP~-~RG~a~Gl~~a~~GLsa~i 175 (564)
. .+++.+...-++.|.+.++..........++||+ +|+.+.|+......++..+
T Consensus 101 ----a--~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (413)
T PRK15403 101 ----T--TSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPII 155 (413)
T ss_pred ----c--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 2 3566677778888888887666666667778985 5788888888777777655
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.43 E-value=7.7e-11 Score=123.83 Aligned_cols=367 Identities=14% Similarity=0.078 Sum_probs=230.2
Q ss_pred ccccHHHHhhcCCCcchhhHHHHhhhhhccc-cccchhhhccccCCCCCCCccchhhhcccCcHHHHHHHHHHHHHHHHH
Q 008482 33 SIYSPALKTTQHYDQTTLDTVSVFKDIGANT-GTLSGVLYTYSTSDHSSHHPRQQRLTRLLGPWVVLLVGAIQCFAGYFL 111 (564)
Q Consensus 33 S~ys~~L~~~lg~sq~~~~~i~~a~~vg~~~-g~~~G~l~d~~~~~~~~~~~~~~~~~~~~GP~~~~~iG~vl~~~Gy~~ 111 (564)
.+--|++|+.+++|+.|...+..+.-.|=.. ++|.|++.+|+| -|..+++|..+..+|..+
T Consensus 33 diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~g------------------yk~gi~lgL~l~avg~~l 94 (422)
T COG0738 33 DILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLG------------------YKAGIVLGLLLYAVGAAL 94 (422)
T ss_pred hhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhh------------------hHHHHHHHHHHHHHHHHH
Confidence 4567999999999999999998775544433 788998888875 899999999999999999
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHhhhcCC-CCcceeeeehhhhhhhHHHHHHHHHhhcCCCchh
Q 008482 112 MWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFPT-YSGTAVGIMKGFVGLSGAILIQVYQTFFNNKPTS 190 (564)
Q Consensus 112 ~~l~~~g~i~~~~~~~l~~~~~l~G~g~~~~~ta~l~t~~k~FP~-~RG~a~Gl~~a~~GLsa~i~s~i~~~~f~~~~~~ 190 (564)
+|-+...+. +-..+.-.++.|.|.+...|++-.-.....|. +.-.=..+.-+++||++.+...+.+.+...+
T Consensus 95 F~pAa~~~~----y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~--- 167 (422)
T COG0738 95 FWPAASSKS----YGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSG--- 167 (422)
T ss_pred Hhhhhhhhh----HHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhh---
Confidence 987655542 55566667888999999999999999999975 4445568889999999988755444322110
Q ss_pred HHHHHHHHHHHHhhhhheeeeeccCCCCcccccchhHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHhhhh
Q 008482 191 YLLLLALLASIDPLLLMWFVRICNTNEGNEKKHLNSFSLIALIVAAYLMVIIILEHIFALPFLVRVLTLILLLLLLASPL 270 (564)
Q Consensus 191 ~llfla~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~p~ 270 (564)
. .... +++... .... ......+..+...+.. +++++.-.
T Consensus 168 -----------~-------~~~~----~~~~~~--~~~~----------------~~~~~v~~pYl~~~~~-lvll~v~~ 206 (422)
T COG0738 168 -----------V-------ALTM----SAAQIL--AIKG----------------ADASSVQFPYLILAGL-LVLLAVLI 206 (422)
T ss_pred -----------h-------hhcc----CHHHHH--HHHH----------------HHHHhhhhHHHHHHHH-HHHHHHHH
Confidence 0 0000 000000 0000 0000001111111111 11111110
Q ss_pred hhhhhccCCCCCCCCcCccccCCCCCCCccchhhhccccCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCcHHHHhhcH
Q 008482 271 YVAIRVQGSDSDRTSETSFCEEDELTDDPHEMHAEKMHVRQDPVGYHRLPSEPDVGTDTNDATTSLWGGDLDLLQAICTL 350 (564)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~t~ 350 (564)
...|.|..+ + .+|+ + .++ .+.+..++++++
T Consensus 207 -~~~k~p~~~-------------------~----------~~~~-------~------------~~~-~~~~~~~l~~~~ 236 (422)
T COG0738 207 -LLSKLPDLQ-------------------V----------AAPS-------L------------GAS-GSAGLSSLFQNK 236 (422)
T ss_pred -HhccCCcCC-------------------c----------cccc-------c------------ccc-ccchHHHHHhCh
Confidence 011111000 0 0000 0 011 123678999999
Q ss_pred HHHHHHHHHHhhhhchhheecchhHHHhh-cCCCccchhHHHHHHHHHHHHhhhhhhhhhhhhhhcccCchhHHHHHHHH
Q 008482 351 EFWILSFAMACGMGSGLATVNNISQIGGS-LGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLA 429 (564)
Q Consensus 351 ~Fwll~~~~~~~~g~gl~~i~n~~~i~~~-~g~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~R~~~l~~~~~ 429 (564)
.+|.-.+..+|=.|.-.++=+.+.+++++ .|.+..+++.++|.+-.+-++||++.-++-.|+.. +. .+.+..+
T Consensus 237 ~~~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~-----~k-~Laf~a~ 310 (422)
T COG0738 237 HLRLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKP-----EK-YLAFYAL 310 (422)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCH-----HH-HHHHHHH
Confidence 99999999999999999999999999988 78888899999999999999999777666667742 22 1222222
Q ss_pred HHHHHHHHHHhcCcchHHHHHHHHHhhhccccchhHHHHHHhhccCchhhhhhhHhhhhhhHHHhhhhhhhhhhhhcccC
Q 008482 430 AMSIGHLIIASGLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREAS 509 (564)
Q Consensus 430 l~~i~~ll~~~~~~~~l~~~~~l~G~~~G~~~~~~P~ivse~FG~k~fg~nyg~~~~a~~iG~~lf~~~l~g~iyD~~~~ 509 (564)
...+-++.........-..+..++|+-.+.+|.+.=++..+..| +|=..-=+++.. ..+|+-+ -|++.|++-|..+.
T Consensus 311 ~~ill~~~~~l~~g~v~~~~l~~ig~F~simfPTIfslal~~l~-~~ts~~s~~l~m-aivGGAi-iP~l~G~i~d~~g~ 387 (422)
T COG0738 311 IAILLLLAVALIGGVVALYALFLIGLFNSIMFPTIFSLALKNLG-EHTSVGSGLLVM-AIVGGAI-IPPLQGVIADMFGI 387 (422)
T ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHHhHHHHHHHHHHHHhccC-ccccccceeeee-heecchH-HHHHHHHHHHhhhh
Confidence 22222222222122233446678899999999888888888888 443333334433 3444432 36689999999875
Q ss_pred CCCccccCCcccHHHHHHHHHHHHHHH
Q 008482 510 GEGNKCTGTHCFMLSFFIMGSATLCGS 536 (564)
Q Consensus 510 ~~~~~C~G~~Cy~~af~i~~~l~v~a~ 536 (564)
...+.+...+|.+-+
T Consensus 388 ------------~~~~~~~pllc~lyV 402 (422)
T COG0738 388 ------------QLTFLIVPLLCYLYV 402 (422)
T ss_pred ------------HHHHHHHHHHHHHHH
Confidence 666665555555543
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.9e-11 Score=126.88 Aligned_cols=177 Identities=15% Similarity=0.091 Sum_probs=122.8
Q ss_pred cHHHHhhcHHHHHHHHHHHhhhhchhheecchhHHHhhcCCCccchhHHHHHHHH-HHHHhhhhhhhhhhhhhhcccCch
Q 008482 342 DLLQAICTLEFWILSFAMACGMGSGLATVNNISQIGGSLGYSSFETSSLISLWSI-WNFLGRFGAGYVSDYFLHVKEWAR 420 (564)
Q Consensus 342 t~~~~l~t~~Fwll~~~~~~~~g~gl~~i~n~~~i~~~~g~~~~~aa~~Vsl~si-~n~~GRl~~G~lsD~l~~~~~~~R 420 (564)
+.++.+|++.+|.+....++...+.....+..++..++.|+++++.+...++..+ ...+|.++.|++.||+++|+
T Consensus 200 ~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~---- 275 (390)
T TIGR02718 200 SLFRFFRRPLAWSLLALALLSAMTAVSGFGLSKLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWR---- 275 (390)
T ss_pred HHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHhhHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHH----
Confidence 4678899999998877766665544444455667788899998888887777764 66789999999999996432
Q ss_pred hHHHHHHHHHHHHHH-HHHH-hc---Ccc--hHHHHHHHHHhhhccccchhHHHHHHhhcc-CchhhhhhhHhhhhhhHH
Q 008482 421 PLFMVITLAAMSIGH-LIIA-SG---LPG--ALYAGSILVGVCYGSQWSLMPTIASEIFGV-LQMGTIFNTITIANPVGS 492 (564)
Q Consensus 421 ~~~l~~~~~l~~i~~-ll~~-~~---~~~--~l~~~~~l~G~~~G~~~~~~P~ivse~FG~-k~fg~nyg~~~~a~~iG~ 492 (564)
.+.....+.++.. +.+. .. .+. .++...++.+++.|..+....+.+.+..+. |+.|+.+++......+|.
T Consensus 276 --~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~ 353 (390)
T TIGR02718 276 --TFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGE 353 (390)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHH
Confidence 2232333221211 1111 11 111 233344555778888888888888888887 788999999887777777
Q ss_pred HhhhhhhhhhhhhcccCCCCccccCCcccHHHHHHHHHHHHHHHH
Q 008482 493 YIFSVRVVGYIYDREASGEGNKCTGTHCFMLSFFIMGSATLCGSL 537 (564)
Q Consensus 493 ~lf~~~l~g~iyD~~~~~~~~~C~G~~Cy~~af~i~~~l~v~a~v 537 (564)
. .++.+.|.+||..+ |+..|.+.+++.+++.+
T Consensus 354 ~-~g~~~~G~l~~~~G------------~~~~f~~~~~~~l~a~~ 385 (390)
T TIGR02718 354 L-IASSIAGYLTDRFG------------YAGGFLSGTVLAVLAIL 385 (390)
T ss_pred H-HHHHHHHHHHHHHc------------cHHHHHHHHHHHHHHHH
Confidence 5 57778999999865 78999888777666653
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=9.9e-11 Score=125.31 Aligned_cols=133 Identities=15% Similarity=0.120 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHHhcCcccccccccHHHHhhcCCCcchhhHHHHhhhhhccc-cccchhhhccccCCCCCCCccchhhhcc
Q 008482 13 WVSTVASIWIQCTSGSLYTFSIYSPALKTTQHYDQTTLDTVSVFKDIGANT-GTLSGVLYTYSTSDHSSHHPRQQRLTRL 91 (564)
Q Consensus 13 w~~l~a~~~i~l~~G~~Y~fS~ys~~L~~~lg~sq~~~~~i~~a~~vg~~~-g~~~G~l~d~~~~~~~~~~~~~~~~~~~ 91 (564)
...+..+.++.......+.+. .+++.+++|.++.++..+..+..++..+ .++.|.+.||++
T Consensus 5 f~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~g---------------- 66 (393)
T PRK11195 5 FYAIMAAQFFSALADNALLFA--AIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFP---------------- 66 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccC----------------
Confidence 344555555555444444333 3456778899988888777777666654 678888888875
Q ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHhhhcC-CCCcceeeeehhhhh
Q 008482 92 LGPWVVLLVGAIQCFAGYFLMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFP-TYSGTAVGIMKGFVG 170 (564)
Q Consensus 92 ~GP~~~~~iG~vl~~~Gy~~~~l~~~g~i~~~~~~~l~~~~~l~G~g~~~~~ta~l~t~~k~FP-~~RG~a~Gl~~a~~G 170 (564)
+|.+++++.++..++.++.... . +. ...-++.|.+.+..+.+......+++| ++|+++.|+......
T Consensus 67 --rr~vl~~~~~~~~~~~~~~~~~-----~--~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~ 134 (393)
T PRK11195 67 --KGRVMFIANGIKLLGCLLMLFG-----I--HP---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTI 134 (393)
T ss_pred --CchhhHHHHHHHHHHHHHHHHH-----H--HH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHH
Confidence 9999999999888887664322 1 11 223467899999999999999999998 579999998776666
Q ss_pred hhHHH
Q 008482 171 LSGAI 175 (564)
Q Consensus 171 Lsa~i 175 (564)
++..+
T Consensus 135 ~~~~~ 139 (393)
T PRK11195 135 AAILL 139 (393)
T ss_pred HHHHH
Confidence 55544
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.2e-09 Score=116.01 Aligned_cols=373 Identities=17% Similarity=0.149 Sum_probs=242.5
Q ss_pred chhHHHHHHHHHHHHhcCcc-cccccccHHHHhhcCCCcchhhHHHHhhhhhccc-cccchhhhccccCCCCCCCccchh
Q 008482 10 NTRWVSTVASIWIQCTSGSL-YTFSIYSPALKTTQHYDQTTLDTVSVFKDIGANT-GTLSGVLYTYSTSDHSSHHPRQQR 87 (564)
Q Consensus 10 ~~Rw~~l~a~~~i~l~~G~~-Y~fS~ys~~L~~~lg~sq~~~~~i~~a~~vg~~~-g~~~G~l~d~~~~~~~~~~~~~~~ 87 (564)
++.|..+.+=.+...+.|+. |.-+--=||+.+.+|.|.++.-...+...++..+ +++-..+.||+.
T Consensus 9 ~~~~~~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~------------ 76 (394)
T COG2814 9 KPMWLALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLE------------ 76 (394)
T ss_pred ccchHHHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccc------------
Confidence 34455555555555666666 7777778999999999999998665666666654 667777778775
Q ss_pred hhcccCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHhhhcC-CCCcceeeeeh
Q 008482 88 LTRLLGPWVVLLVGAIQCFAGYFLMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFP-TYSGTAVGIMK 166 (564)
Q Consensus 88 ~~~~~GP~~~~~iG~vl~~~Gy~~~~l~~~g~i~~~~~~~l~~~~~l~G~g~~~~~ta~l~t~~k~FP-~~RG~a~Gl~~ 166 (564)
+|.+++...+++.+|=.+. ... ++++.+..-=++.|...|.+...+...++|-=| +|||.++|++.
T Consensus 77 ------Rr~lLl~~l~lFi~~n~l~-----alA--p~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~ 143 (394)
T COG2814 77 ------RRRLLLGLLALFIVSNLLS-----ALA--PSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVF 143 (394)
T ss_pred ------hHHHHHHHHHHHHHHHHHH-----HHh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHH
Confidence 7777777778888887773 333 578888888899999999988888888999986 68999999998
Q ss_pred hhhhhhHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhhhhheeeeeccCCCCcccccchhHHHHHHHHHHHHHHHHHHhh
Q 008482 167 GFVGLSGAILIQVYQTFFNNKPTSYLLLLALLASIDPLLLMWFVRICNTNEGNEKKHLNSFSLIALIVAAYLMVIIILEH 246 (564)
Q Consensus 167 a~~GLsa~i~s~i~~~~f~~~~~~~llfla~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~y~~~~~~~~~ 246 (564)
++.-++-.+- .|.-. .++- ..+.+ ..|..+.....
T Consensus 144 ~G~tlA~v~G---------------------vPLGt-~ig~----~~GWR--------~~F~~ia~l~l----------- 178 (394)
T COG2814 144 TGLTLATVLG---------------------VPLGT-FLGQ----LFGWR--------ATFLAIAVLAL----------- 178 (394)
T ss_pred HHHHHHHHHh---------------------ccHHH-HHHH----HhhHH--------HHHHHHHHHHH-----------
Confidence 8777665332 23322 1111 01110 11111111000
Q ss_pred hccCchHHHHHHHHHHHHHHhhhhhhhhhccCCCCCCCCcCccccCCCCCCCccchhhhccccCCCCCCCCCCCCCCCCC
Q 008482 247 IFALPFLVRVLTLILLLLLLASPLYVAIRVQGSDSDRTSETSFCEEDELTDDPHEMHAEKMHVRQDPVGYHRLPSEPDVG 326 (564)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~ll~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (564)
+.++.+ -. ..|+++.. + +++
T Consensus 179 --------------l~~~~~--~~----~lP~~~~~-------------------------------~-------~~~-- 198 (394)
T COG2814 179 --------------LALLLL--WK----LLPPSEIS-------------------------------G-------SLP-- 198 (394)
T ss_pred --------------HHHHHH--HH----hCCCccCC-------------------------------C-------CCC--
Confidence 001000 00 00100000 0 000
Q ss_pred CCCCCCCccCCCCCCcHHHHhhcHHHHHHHHHHHhhhhchhheecchhHHHhhc-CCCccchhHHHHHHHHHHHHhhhhh
Q 008482 327 TDTNDATTSLWGGDLDLLQAICTLEFWILSFAMACGMGSGLATVNNISQIGGSL-GYSSFETSSLISLWSIWNFLGRFGA 405 (564)
Q Consensus 327 ~~~~~~~~~~~~~~~t~~~~l~t~~Fwll~~~~~~~~g~gl~~i~n~~~i~~~~-g~~~~~aa~~Vsl~si~n~~GRl~~ 405 (564)
.+-.+..+.+|+|+-|...++.++..+...+...=+.|+.++. |++.+..+...-+++++..+|-++.
T Consensus 199 -----------~~~~~~~~~l~~p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~g 267 (394)
T COG2814 199 -----------GPLRTLLRLLRRPGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLG 267 (394)
T ss_pred -----------cchhHHHHHhcCchHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHH
Confidence 0112457889999999999999999998888888899999885 7888888889999999999999999
Q ss_pred hhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHh--cCcchHHHHHHHHHhhhccccchhHHHHHHhhccCchhhhh--
Q 008482 406 GYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIAS--GLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIF-- 481 (564)
Q Consensus 406 G~lsD~l~~~~~~~R~~~l~~~~~l~~i~~ll~~~--~~~~~l~~~~~l~G~~~G~~~~~~P~ivse~FG~k~fg~ny-- 481 (564)
|.+.|| +. |.. +.....++++.++.+.. ..+........+.|+..+........-.++ .-+++-+.-=
T Consensus 268 Grl~dr-~~-----~~~-l~~~~~l~a~~~l~l~~~~~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~-~~p~~~~~a~sl 339 (394)
T COG2814 268 GRLADR-GP-----RRA-LIAALLLLALALLALTFTGASPALALALLFLWGFAFSPALQGLQTRLAR-LAPDAADLAGSL 339 (394)
T ss_pred hhhccc-cc-----hhH-HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhhhhHHHHHhcc-cCCCchHHHHHH
Confidence 999999 42 322 33444444444443332 222223334445666666666666666666 4344444333
Q ss_pred --hhHhhhhhhHHHhhhhhhhhhhhhcccCCCCccccCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 008482 482 --NTITIANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSFFIMGSATLCGSLAAFGLFLRTKR 548 (564)
Q Consensus 482 --g~~~~a~~iG~~lf~~~l~g~iyD~~~~~~~~~C~G~~Cy~~af~i~~~l~v~a~vl~~~l~~r~~~ 548 (564)
....++..+|+. +.|.++|+.+ |.....+.+.+.+++.++.++..+++||
T Consensus 340 ~~aa~nlgia~GA~-----lGG~v~~~~g------------~~~~~~~~a~l~~~a~~~~~~~~~~~~~ 391 (394)
T COG2814 340 NVAAFNLGIALGAA-----LGGLVLDALG------------YAATGWVGAALLLLALLLALLSARKDRR 391 (394)
T ss_pred HHHHHHHHHHHHHH-----HHHHHHHhhc------------hHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 344566777765 5889999944 7999999999999998777765544443
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=5.9e-10 Score=121.07 Aligned_cols=159 Identities=18% Similarity=0.116 Sum_probs=95.9
Q ss_pred cHHHHhhcHHHHHHHHHHHhhhhchhheecchhHHHhhcCCC-ccchhHHHHHHHHHHHHhhhhhhhhhhhhhhcccCch
Q 008482 342 DLLQAICTLEFWILSFAMACGMGSGLATVNNISQIGGSLGYS-SFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWAR 420 (564)
Q Consensus 342 t~~~~l~t~~Fwll~~~~~~~~g~gl~~i~n~~~i~~~~g~~-~~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~R 420 (564)
..++.+|++.||.+.+..++... +....+...........+ +...........+...++-+++++++||++||+.
T Consensus 221 ~~~~~~~n~~~~~l~~~~~~~~~-~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~--- 296 (444)
T PRK09669 221 DLKLLLGNSQWRIMFIFNVVLLT-AVVTRGGATLYYVNYVLLRPDLATLFLVTGMIAGLFGALLSERLLGKFDRVRA--- 296 (444)
T ss_pred HHHHHhCCchHHHHHHHHHHHHH-HHHHHhhhhheeeeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHH---
Confidence 46788999999998777665432 222323333333221122 2222334444557777899999999999975432
Q ss_pred hHHHHHHHHHHHH-HHHHHH--hcCcchHHHHHHHHHhhhccccchhHHHHHHhh-------ccCchhhhhhhHhhhhhh
Q 008482 421 PLFMVITLAAMSI-GHLIIA--SGLPGALYAGSILVGVCYGSQWSLMPTIASEIF-------GVLQMGTIFNTITIANPV 490 (564)
Q Consensus 421 ~~~l~~~~~l~~i-~~ll~~--~~~~~~l~~~~~l~G~~~G~~~~~~P~ivse~F-------G~k~fg~nyg~~~~a~~i 490 (564)
+.....+.++ ...+.. .+....+++..++.|+++|....+.+++++|.. |.|.-|..|+......-+
T Consensus 297 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~kl 373 (444)
T PRK09669 297 ---FKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKL 373 (444)
T ss_pred ---HHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHH
Confidence 2222222222 221221 122224566778899999999999999999987 777778888877654444
Q ss_pred HHHhhhhhhhhhhhhccc
Q 008482 491 GSYIFSVRVVGYIYDREA 508 (564)
Q Consensus 491 G~~lf~~~l~g~iyD~~~ 508 (564)
|.- +++.+.|.++|..|
T Consensus 374 g~a-lg~~i~g~ll~~~G 390 (444)
T PRK09669 374 GLA-IGGAVVGWILAWVD 390 (444)
T ss_pred HHH-HHHHHHHHHHHHcC
Confidence 442 34446777777654
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.9e-10 Score=124.06 Aligned_cols=328 Identities=16% Similarity=0.097 Sum_probs=192.2
Q ss_pred HHhhcCCCcchhhHHHHhhhhhccc-cccchhhhccccCCCCCCCccchhhhcccCcHHHH-HHHHHHHHHHHHHHHHHH
Q 008482 39 LKTTQHYDQTTLDTVSVFKDIGANT-GTLSGVLYTYSTSDHSSHHPRQQRLTRLLGPWVVL-LVGAIQCFAGYFLMWASV 116 (564)
Q Consensus 39 L~~~lg~sq~~~~~i~~a~~vg~~~-g~~~G~l~d~~~~~~~~~~~~~~~~~~~~GP~~~~-~iG~vl~~~Gy~~~~l~~ 116 (564)
+++.++....|++.+.++..+|=.+ -+|+|++.||+| +...+ ..+.+-...+++..|
T Consensus 72 ~~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~------------------ls~~l~~~~~~w~~~~~~~~~--- 130 (495)
T KOG2533|consen 72 LKEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFP------------------LSKGLSVSGILWGLFGFLTAA--- 130 (495)
T ss_pred CccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCC------------------hHHHHHHHHHHHHHHHHHHHH---
Confidence 6788899999999888888888765 478999999986 33322 222222222222211
Q ss_pred hcCCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHhhhcC-CCCcceeeeehhhhhhhHHHHHHHHHhhcCCCchhHHHHH
Q 008482 117 VGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFP-TYSGTAVGIMKGFVGLSGAILIQVYQTFFNNKPTSYLLLL 195 (564)
Q Consensus 117 ~g~i~~~~~~~l~~~~~l~G~g~~~~~ta~l~t~~k~FP-~~RG~a~Gl~~a~~GLsa~i~s~i~~~~f~~~~~~~llfl 195 (564)
. .+++.+++.-++.|.-.+....+.+....+||. ++||+..|+.-+.-++|+.+-+.+...+++-+...
T Consensus 131 ---~--~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~----- 200 (495)
T KOG2533|consen 131 ---V--HSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSG----- 200 (495)
T ss_pred ---H--hhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCC-----
Confidence 2 356778888888889888889899999999995 78999999999999999988776666544211000
Q ss_pred HHHHHHHhhhhheeeeeccCCCCcccccchhHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHhhhhhhhhh
Q 008482 196 ALLASIDPLLLMWFVRICNTNEGNEKKHLNSFSLIALIVAAYLMVIIILEHIFALPFLVRVLTLILLLLLLASPLYVAIR 275 (564)
Q Consensus 196 a~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~p~~~~~~ 275 (564)
...+ ..-. |. +.++-.++. .+++....|
T Consensus 201 ---------------~~~g-----W~~~---Fi----I~G~i~~~~-------------------gi~~f~~lp------ 228 (495)
T KOG2533|consen 201 ---------------GLAG-----WRWL---FI----IEGVITLVL-------------------GIVVFFFLP------ 228 (495)
T ss_pred ---------------CcCC-----ceee---hh----HHHHHHHHH-------------------HheEEEEec------
Confidence 0000 0000 10 000000000 000000111
Q ss_pred ccCCCCCCCCcCccccCCCCCCCccchhhhccccCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCcHHHHhhcHHHHHH
Q 008482 276 VQGSDSDRTSETSFCEEDELTDDPHEMHAEKMHVRQDPVGYHRLPSEPDVGTDTNDATTSLWGGDLDLLQAICTLEFWIL 355 (564)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~t~~Fwll 355 (564)
..+++. + -.++++.... +++.+.++. .+. + +..+-..++|++++|..|.+
T Consensus 229 ~~P~~~-~---fl~~~ek~~~---------~~~~~~~~~-------~~~-----~-----~~~~~~~~~~a~~dp~vw~~ 278 (495)
T KOG2533|consen 229 DNPSKA-W---FLTDEEKELV---------VERLRESPS-------GGI-----E-----NKFKWKGFKEALKDPGVWPF 278 (495)
T ss_pred CChhhc-c---ccchHHHHHH---------HHHHHhccC-------CCc-----c-----cccCHHHHHHHHhchhHHHH
Confidence 001100 0 0000000000 000000000 000 0 00123467999999999999
Q ss_pred HHHHHhhhhchhheecchhHHHhh-cCCCccchhHHHHHHHHHHHHhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHH
Q 008482 356 SFAMACGMGSGLATVNNISQIGGS-LGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIG 434 (564)
Q Consensus 356 ~~~~~~~~g~gl~~i~n~~~i~~~-~g~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~R~~~l~~~~~l~~i~ 434 (564)
.+..+|.....-.+.+-+..+.++ .|++..++..+...+.+.+.+|=++.|++|||+....+ .|.......++...++
T Consensus 279 ~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~-~~~~~~~~~~~~~~~g 357 (495)
T KOG2533|consen 279 SLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFA-RRLLFIVFLCLYAIIG 357 (495)
T ss_pred HHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHH-HHHHHHHHHHHHHHHH
Confidence 999999988888888888888888 46888888889999999999999999999999741111 2334455556666666
Q ss_pred HHHHH-hcCcchHHHHHHHHHhhhccccchhHHHHHHhhccCchhhhhhhHh
Q 008482 435 HLIIA-SGLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTIT 485 (564)
Q Consensus 435 ~ll~~-~~~~~~l~~~~~l~G~~~G~~~~~~P~ivse~FG~k~fg~nyg~~~ 485 (564)
...+. ...+...+ .++-+|......+.++.+.+=.++..-|++-+.
T Consensus 358 ~~~l~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~w~s~~~~g~~k~~~ 404 (495)
T KOG2533|consen 358 AISLLAAAVLPGAY-----GAFLIGPYGLIATAIIALSWTSANLAGNTKALT 404 (495)
T ss_pred HHHHHhhccchHHh-----HHHHhcchhhHHHHHHHHhhccccccchHHhHH
Confidence 44332 22221122 122233333445566777777777777776654
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.1e-10 Score=120.66 Aligned_cols=151 Identities=16% Similarity=0.102 Sum_probs=102.1
Q ss_pred hhhchhHHHHHHHHHHHHhcCcc-cccccccHHHHhhcCCCcchhhHHHHhhhhhccccccchhhhccccCCCCCCCccc
Q 008482 7 LRLNTRWVSTVASIWIQCTSGSL-YTFSIYSPALKTTQHYDQTTLDTVSVFKDIGANTGTLSGVLYTYSTSDHSSHHPRQ 85 (564)
Q Consensus 7 ~~~~~Rw~~l~a~~~i~l~~G~~-Y~fS~ys~~L~~~lg~sq~~~~~i~~a~~vg~~~g~~~G~l~d~~~~~~~~~~~~~ 85 (564)
|.+++||+.|++-.+++++.|-. =.|+.-++....-|| |....... ..+-+...++.|+..-
T Consensus 38 rVy~rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~~~Yg-s~~~~~wl---smIym~v~vp~gf~~m------------- 100 (480)
T KOG2563|consen 38 RVYPRRWVVLLAFSLLNFSNGMQWIQYAPINNYVNSFYG-SSSAADWL---SMIYMVVSVPFGFAAM------------- 100 (480)
T ss_pred ccchhHhHHHHHHHHHHhcCcchheeehhHHHHHHHHhc-chHHHHHH---HHHHHHHHHHHhhHHH-------------
Confidence 57889999999999999998876 456666667777888 33323333 3333444556665544
Q ss_pred hhhhcccCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHH--HHHHHHHHHhhhhhhhhHHHHHHHhhhcC-CCCccee
Q 008482 86 QRLTRLLGPWVVLLVGAIQCFAGYFLMWASVVGLIPRPPVP--VMCLFMLFAAHGMTFFNTADVVTSVRNFP-TYSGTAV 162 (564)
Q Consensus 86 ~~~~~~~GP~~~~~iG~vl~~~Gy~~~~l~~~g~i~~~~~~--~l~~~~~l~G~g~~~~~ta~l~t~~k~FP-~~RG~a~ 162 (564)
|+.||+|-|.++++|+++..+|-.+=-.+..-.++ +.+| +...=..+++.+.-+...-+-+-+.-||| |+|..|.
T Consensus 101 -w~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~-~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~ 178 (480)
T KOG2563|consen 101 -WILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVP-PLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIAT 178 (480)
T ss_pred -HhhcccchHHHHHHHHHHHHHHHHHhhhccCcccc-ccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhh
Confidence 35677789999999999999999874333333333 3344 33344566666666777777788999995 7898877
Q ss_pred eeehhhhhhhHHHH
Q 008482 163 GIMKGFVGLSGAIL 176 (564)
Q Consensus 163 Gl~~a~~GLsa~i~ 176 (564)
.+-.-+.=||.++-
T Consensus 179 ~~~v~~n~LGvavg 192 (480)
T KOG2563|consen 179 VLGVMGNPLGVAVG 192 (480)
T ss_pred hHHHhcchHHHHHH
Confidence 66554444776553
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=8.3e-10 Score=119.94 Aligned_cols=159 Identities=11% Similarity=0.033 Sum_probs=94.9
Q ss_pred cHHHHhhcHHHHHHHHHHHhhhhchhheecchhHHHhh-cCCCccchhHHHHHHHHHHHHhhhhhhhhhhhhhhcccCch
Q 008482 342 DLLQAICTLEFWILSFAMACGMGSGLATVNNISQIGGS-LGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWAR 420 (564)
Q Consensus 342 t~~~~l~t~~Fwll~~~~~~~~g~gl~~i~n~~~i~~~-~g~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~R 420 (564)
.+++++|++.|+.+.++.++..............+.++ +|.++...........+...++.++++.++||+++|
T Consensus 220 ~~~~l~~n~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~----- 294 (448)
T PRK09848 220 SLQTLKRNRPLFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKK----- 294 (448)
T ss_pred HHHHHhCCchHHHHHHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH-----
Confidence 36789999999998887777654444433333334443 455432222222222455667788888888888543
Q ss_pred hHHHHHHHHHHHHHHHHHHhcC---cchHHHHHHHHHhhhccccchhHHHHHHhh-------ccCchhhhhhhHhhhhhh
Q 008482 421 PLFMVITLAAMSIGHLIIASGL---PGALYAGSILVGVCYGSQWSLMPTIASEIF-------GVLQMGTIFNTITIANPV 490 (564)
Q Consensus 421 ~~~l~~~~~l~~i~~ll~~~~~---~~~l~~~~~l~G~~~G~~~~~~P~ivse~F-------G~k~fg~nyg~~~~a~~i 490 (564)
..+.+...+.+++.+++.... ...+++..++.|++.|..+....++.+|.= |.|+-|..+|+.....-+
T Consensus 295 -~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~kl 373 (448)
T PRK09848 295 -NTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKC 373 (448)
T ss_pred -HHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHH
Confidence 223444444455544433221 123444567788999988888888877653 556778888887766555
Q ss_pred HHHhhhhhhhhhhhhcc
Q 008482 491 GSYIFSVRVVGYIYDRE 507 (564)
Q Consensus 491 G~~lf~~~l~g~iyD~~ 507 (564)
|+- +++.+.|.+.|..
T Consensus 374 g~a-ig~~i~g~~l~~~ 389 (448)
T PRK09848 374 GQA-IGGSIPAFILGLS 389 (448)
T ss_pred HHH-HHHHHHHHHHHHc
Confidence 553 3444566666543
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.20 E-value=6e-09 Score=108.36 Aligned_cols=366 Identities=14% Similarity=0.126 Sum_probs=221.7
Q ss_pred hHHHHHHHHHHHHhcCcccccccc---cHHHHhhcCCCcchhhHHHHhhhhhc-cccccchhhhccccCCCCCCCccchh
Q 008482 12 RWVSTVASIWIQCTSGSLYTFSIY---SPALKTTQHYDQTTLDTVSVFKDIGA-NTGTLSGVLYTYSTSDHSSHHPRQQR 87 (564)
Q Consensus 12 Rw~~l~a~~~i~l~~G~~Y~fS~y---s~~L~~~lg~sq~~~~~i~~a~~vg~-~~g~~~G~l~d~~~~~~~~~~~~~~~ 87 (564)
+|+.+.+-+++.+.. -=.++.- =+++++.+|.|.++...+++.=.+.- .+++....
T Consensus 10 ~~~li~gIvlia~NL--R~~itsvgPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~------------------ 69 (395)
T COG2807 10 PLLLLAGIVLIAFNL--RPAITSVGPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPR------------------ 69 (395)
T ss_pred chHHHHHHHHHHhcc--chhhhhhhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHH------------------
Confidence 355444444444332 2333333 45667789999998876654433322 23333443
Q ss_pred hhcccCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHhhhcCCCCcceeeeehh
Q 008482 88 LTRLLGPWVVLLVGAIQCFAGYFLMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFPTYSGTAVGIMKG 167 (564)
Q Consensus 88 ~~~~~GP~~~~~iG~vl~~~Gy~~~~l~~~g~i~~~~~~~l~~~~~l~G~g~~~~~ta~l~t~~k~FP~~RG~a~Gl~~a 167 (564)
+.+|+|++..+..+-++..+|-.+ .... +.+.+..=..++|.|.+-.|.=-=.-.-|+||+|-|..+|+-..
T Consensus 70 Lar~~g~er~l~~~Llli~~G~~i-----R~~~---~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~~~~mtglYs~ 141 (395)
T COG2807 70 LARRFGEERSLFLALLLIAAGILI-----RSLG---GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKRVGLMTGLYST 141 (395)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHH-----Hhcc---cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccchhhHHhHHHH
Confidence 445567999999999999999887 3322 24455566777788888777654444568999999999999999
Q ss_pred hhhhhHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhhhhheeeeeccCCCCcccccchhHHHHHHHHHHHHHHHHHHhhh
Q 008482 168 FVGLSGAILIQVYQTFFNNKPTSYLLLLALLASIDPLLLMWFVRICNTNEGNEKKHLNSFSLIALIVAAYLMVIIILEHI 247 (564)
Q Consensus 168 ~~GLsa~i~s~i~~~~f~~~~~~~llfla~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~y~~~~~~~~~~ 247 (564)
-.++++++-+.+. .|.... +..........+...++
T Consensus 142 sl~~~aaLaa~la-----------------vpla~~--------------------~~gW~~aL~~WAl~all------- 177 (395)
T COG2807 142 SLGAGAALAAALA-----------------VPLAQH--------------------SGGWRGALGFWALLALL------- 177 (395)
T ss_pred HHHHHHHHHhhhh-----------------hHHHHh--------------------hccHHHHHHHHHHHHHH-------
Confidence 9999988765322 132210 00001100000000000
Q ss_pred ccCchHHHHHHHHHHHHHHhhhhhhhhhccCCCCCCCCcCccccCCCCCCCccchhhhccccCCCCCCCCCCCCCCCCCC
Q 008482 248 FALPFLVRVLTLILLLLLLASPLYVAIRVQGSDSDRTSETSFCEEDELTDDPHEMHAEKMHVRQDPVGYHRLPSEPDVGT 327 (564)
Q Consensus 248 ~~~~~~~~~~~~~~~~~ll~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (564)
.++.=. +...++. . + + . .
T Consensus 178 ---------------Al~~Wl------Pq~~r~~--~--------------~--------------~-----~-~----- 195 (395)
T COG2807 178 ---------------ALLIWL------PQALREQ--A--------------A--------------S-----I-A----- 195 (395)
T ss_pred ---------------HHHHHh------hhccccc--c--------------c--------------c-----c-c-----
Confidence 000000 1100000 0 0 0 0 0
Q ss_pred CCCCCCccCCCCCCcHHHHhhcHHHHHHHHHHHhhhhchhheecchhHHHhhcCCCccchhHHHHHHHHHHHHhhhhhhh
Q 008482 328 DTNDATTSLWGGDLDLLQAICTLEFWILSFAMACGMGSGLATVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGY 407 (564)
Q Consensus 328 ~~~~~~~~~~~~~~t~~~~l~t~~Fwll~~~~~~~~g~gl~~i~n~~~i~~~~g~~~~~aa~~Vsl~si~n~~GRl~~G~ 407 (564)
....+-...+|++.=|.+-+-|-+.+..-..++.=+++|..+.|+++.++..++|+..+.....-+..-+
T Consensus 196 ----------~~~~~~~~vw~~~~aW~vtLfmGlqS~~~Y~~~~WLP~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~ 265 (395)
T COG2807 196 ----------TKLVSVRKVWRSPLAWQVTLFMGLQSLLYYIVIGWLPAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPL 265 (395)
T ss_pred ----------cccccccccccCchhHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 0011224578999999999989898998899999999999999999999999999999999999999999
Q ss_pred hhhhhhhcccCchhHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHhhhccccchhHHHHHHhhccCchhhh-hhhHh-
Q 008482 408 VSDYFLHVKEWARPLFMVITLAAMSIGHLIIASGLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTI-FNTIT- 485 (564)
Q Consensus 408 lsD~l~~~~~~~R~~~l~~~~~l~~i~~ll~~~~~~~~l~~~~~l~G~~~G~~~~~~P~ivse~FG~k~fg~n-yg~~~- 485 (564)
+.+|... .|+. .....+++.++..=+........++-+++.|++.|+.|++.=.++.+..-..+-... -|+..
T Consensus 266 la~R~~n----~r~~-~~~~~~~~l~G~~G~~~~P~~~~~lw~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg 340 (395)
T COG2807 266 LARRSKN----QRPL-VVLALLLMLVGLVGLLLAPGQLPILWALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQG 340 (395)
T ss_pred HHHHhcc----cchH-HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhh
Confidence 9888432 3433 333444444333211111111222226899999999998888888877644333222 22222
Q ss_pred hhhhhHHHhhhhhhhhhhhhcccCCCCccccCCcccHHHHHHHHHHHHHHHHHH
Q 008482 486 IANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSFFIMGSATLCGSLAA 539 (564)
Q Consensus 486 ~a~~iG~~lf~~~l~g~iyD~~~~~~~~~C~G~~Cy~~af~i~~~l~v~a~vl~ 539 (564)
.+..+.. ++|.+.|.++|.+++ ++..+...+...++..+..
T Consensus 341 ~GYllAa--~GP~l~G~lhDa~gs-----------w~~~~~~l~~~~i~m~i~G 381 (395)
T COG2807 341 VGYLLAA--FGPWLFGFLHDATGS-----------WSAPLVLLALATLLMLIFG 381 (395)
T ss_pred hhHHHHh--hhhhhHhHHHHhcCC-----------hHHHHHHHHHHHHHHHHHH
Confidence 2333332 355679999999998 7888876665555544333
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.4e-08 Score=112.52 Aligned_cols=155 Identities=14% Similarity=0.075 Sum_probs=93.1
Q ss_pred hHHHHHHHHHHHHhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHhcC----------cchHHHHHHHHHhhh
Q 008482 388 SSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIASGL----------PGALYAGSILVGVCY 457 (564)
Q Consensus 388 a~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~R~~~l~~~~~l~~i~~ll~~~~~----------~~~l~~~~~l~G~~~ 457 (564)
+.+.++-+++..+.-.+.+++-+|+++|. +.+..+.+.+++.+++++.+.... +..+.+..++.|++.
T Consensus 319 ~~~~s~n~i~iil~~p~~~~~~~~l~~r~--~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge 396 (500)
T PRK09584 319 EQYQALNPFWIMIGSPILAAIYNKMGDRL--PMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGE 396 (500)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhCcCC--CcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHH
Confidence 44445555444444444455556666554 344556666777777776543211 124666778999999
Q ss_pred ccccchhHHHHHHhhccCchhhhhhhHhhhhhhHHHhhhhhhhhhhhhcccCCCCccccCC-cccHHHHHHHHHHHHHHH
Q 008482 458 GSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASGEGNKCTGT-HCFMLSFFIMGSATLCGS 536 (564)
Q Consensus 458 G~~~~~~P~ivse~FG~k~fg~nyg~~~~a~~iG~~lf~~~l~g~iyD~~~~~~~~~C~G~-~Cy~~af~i~~~l~v~a~ 536 (564)
+....+..+++.+.=-.+.-|...|..+++.++|+.+ +..+.+........ ...... .=|...|...++++++..
T Consensus 397 ~~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~-~g~~~~~~~~~~~~---~~~~~~~~~~~~~f~~~~~~~~~~a 472 (500)
T PRK09584 397 LMISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALI-AGYVANLMAVPDNV---TDPLMSLEVYGRVFLQIGIATAVIA 472 (500)
T ss_pred HHHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcccccc---ccchhhhhhHHHHHHHHHHHHHHHH
Confidence 9999999999999988888999999999888898864 33333322211100 000000 117788887776665544
Q ss_pred HHHHHHHHhhhH
Q 008482 537 LAAFGLFLRTKR 548 (564)
Q Consensus 537 vl~~~l~~r~~~ 548 (564)
++.+++..+.+|
T Consensus 473 ~~~~~~~~~~~k 484 (500)
T PRK09584 473 VLMLLTAPKLNR 484 (500)
T ss_pred HHHHHHHHHHHH
Confidence 444444444444
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.4e-07 Score=103.91 Aligned_cols=129 Identities=10% Similarity=-0.009 Sum_probs=95.0
Q ss_pred cccccHHHHhh--cCCCcchhhHHHHhhhhhccc-cccchhhhcc-ccCCCCCCCccchhhhcccCcHHHHHHHHHHHHH
Q 008482 32 FSIYSPALKTT--QHYDQTTLDTVSVFKDIGANT-GTLSGVLYTY-STSDHSSHHPRQQRLTRLLGPWVVLLVGAIQCFA 107 (564)
Q Consensus 32 fS~ys~~L~~~--lg~sq~~~~~i~~a~~vg~~~-g~~~G~l~d~-~~~~~~~~~~~~~~~~~~~GP~~~~~iG~vl~~~ 107 (564)
++....-+.++ +|+|+.|...+.....++.++ .+++|.+.|| + |+|.++++|.++..+
T Consensus 30 ~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~------------------G~~~~l~~~~~~~~~ 91 (475)
T TIGR00924 30 QGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVW------------------GTKKTMVLGGIVLML 91 (475)
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhc------------------chHHHHHHHHHHHHH
Confidence 33444557777 999999999776666666655 5788888887 5 499999999999999
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHhhhcCC----CCcceeeeehhhhhhhHHHHHHHHHhh
Q 008482 108 GYFLMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFPT----YSGTAVGIMKGFVGLSGAILIQVYQTF 183 (564)
Q Consensus 108 Gy~~~~l~~~g~i~~~~~~~l~~~~~l~G~g~~~~~ta~l~t~~k~FP~----~RG~a~Gl~~a~~GLsa~i~s~i~~~~ 183 (564)
|++++.+. + +++.+....++.|.|.+....+......++||+ +|+.+.++.-....+|+++-..+....
T Consensus 92 g~~~~~~~-----~--~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l 164 (475)
T TIGR00924 92 GHFMLAMS-----I--YPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVI 164 (475)
T ss_pred HHHHHHhc-----c--cHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHH
Confidence 99885432 1 244455555667888888887777778899974 388898988888888887666555544
Q ss_pred cC
Q 008482 184 FN 185 (564)
Q Consensus 184 f~ 185 (564)
.+
T Consensus 165 ~~ 166 (475)
T TIGR00924 165 AE 166 (475)
T ss_pred HH
Confidence 43
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.8e-08 Score=110.07 Aligned_cols=392 Identities=16% Similarity=0.097 Sum_probs=218.0
Q ss_pred cHHHHhhcCC--CcchhhHH----HHhhhhhcccc-ccchhhhccccCCCCCCCccchhhhcccCcHHHHHHHHHHHHHH
Q 008482 36 SPALKTTQHY--DQTTLDTV----SVFKDIGANTG-TLSGVLYTYSTSDHSSHHPRQQRLTRLLGPWVVLLVGAIQCFAG 108 (564)
Q Consensus 36 s~~L~~~lg~--sq~~~~~i----~~a~~vg~~~g-~~~G~l~d~~~~~~~~~~~~~~~~~~~~GP~~~~~iG~vl~~~G 108 (564)
+..+.+++|. +.++++.+ ..+.-+|+.+| +.+|++.|++ |+|..+++..++..++
T Consensus 42 n~t~~~r~g~~~s~~~~~~lwS~~vs~f~iG~~~Gs~~~~~la~~~------------------GRK~~l~~~~~l~~~~ 103 (485)
T KOG0569|consen 42 NETLIERYGLPLSDSTLDLLWSLIVSIFFIGGMIGSFSSGLLADRF------------------GRKNALLLSNLLAVLA 103 (485)
T ss_pred HHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh------------------cchHHHHHHHHHHHHH
Confidence 3455567884 44445433 34445555553 4566666665 5999999999988888
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHhhhcCCC-CcceeeeehhhhhhhHHHHHHHHHh-hcCC
Q 008482 109 YFLMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFPTY-SGTAVGIMKGFVGLSGAILIQVYQT-FFNN 186 (564)
Q Consensus 109 y~~~~l~~~g~i~~~~~~~l~~~~~l~G~g~~~~~ta~l~t~~k~FP~~-RG~a~Gl~~a~~GLsa~i~s~i~~~-~f~~ 186 (564)
-.++.++... .++.++.+==++.|..++.......+--..-=|++ ||.+.-+.--++.++-.+-.++..- ++++
T Consensus 104 ~~~~~~s~~~----~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt 179 (485)
T KOG0569|consen 104 ALLMGLSKSA----PSFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGT 179 (485)
T ss_pred HHHHHHHHHh----hhHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCC
Confidence 8887665333 24565556667788888887777777777777975 9998777766666666554333333 3333
Q ss_pred Cc-hhHHHHHHHHHHHHhhhhheeeeeccCCCCcccccchhHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHH
Q 008482 187 KP-TSYLLLLALLASIDPLLLMWFVRICNTNEGNEKKHLNSFSLIALIVAAYLMVIIILEHIFALPFLVRVLTLILLLLL 265 (564)
Q Consensus 187 ~~-~~~llfla~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~l 265 (564)
+. =.|+++....|....++..+++. ..+ |. . +.. ..+..+..-
T Consensus 180 ~~~W~~l~~~~~i~~~~~l~~l~~~P---ESP----k~----L----------l~~--------k~~~~~A~~------- 223 (485)
T KOG0569|consen 180 EDLWPYLLAFPLIPALLQLALLPFLP---ESP----KY----L----------LIK--------KGDEEEARK------- 223 (485)
T ss_pred CcchHHHHHHHHHHHHHHHHHHhcCC---CCc----ch----H----------HHH--------cCCHHHHHH-------
Confidence 32 25666666666666554444432 111 10 0 000 000000000
Q ss_pred HhhhhhhhhhccCCCCCCCCcCccccCCCCCCCccchhhhccccCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCcHHH
Q 008482 266 LASPLYVAIRVQGSDSDRTSETSFCEEDELTDDPHEMHAEKMHVRQDPVGYHRLPSEPDVGTDTNDATTSLWGGDLDLLQ 345 (564)
Q Consensus 266 l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~ 345 (564)
..+..+.. ++.+ +..|++.++. ++++ . ....+.+++|
T Consensus 224 -------sl~~y~G~-~~~~------------~~~e~~~~e~------~~~~----~-------------~~~~~~sl~~ 260 (485)
T KOG0569|consen 224 -------ALKFYRGK-EDVE------------AEIEEMLREI------EEEE----L-------------EKKKQISLRQ 260 (485)
T ss_pred -------HHHHHhCC-Ccch------------hHHHHHHHHH------HHhc----c-------------ccccCCcHHH
Confidence 00000000 0000 0000000000 0000 0 0013567888
Q ss_pred HhhcH----HHHHHHHHHHhhhhchhheecc-hhHHHhhcCCCccchhHHHHHHHHHHHHhhhhhhhhhhhhhhcccCch
Q 008482 346 AICTL----EFWILSFAMACGMGSGLATVNN-ISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWAR 420 (564)
Q Consensus 346 ~l~t~----~Fwll~~~~~~~~g~gl~~i~n-~~~i~~~~g~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~R 420 (564)
+++++ ..++.....++...+|...++. ...|.++.|++..++...-...++.|....+++.++-||++ |
T Consensus 261 ~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~g------R 334 (485)
T KOG0569|consen 261 LLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLG------R 334 (485)
T ss_pred HhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC------C
Confidence 88864 3455555666666677655543 44566788999888888888999999999999999999996 3
Q ss_pred hHHHHHHHHHHHHHHHHHH-----hc-C-cch---HHHHHHHHHhhhccccc-hhHHHHHHhhccCchhhhhhhHhhhhh
Q 008482 421 PLFMVITLAAMSIGHLIIA-----SG-L-PGA---LYAGSILVGVCYGSQWS-LMPTIASEIFGVLQMGTIFNTITIANP 489 (564)
Q Consensus 421 ~~~l~~~~~l~~i~~ll~~-----~~-~-~~~---l~~~~~l~G~~~G~~~~-~~P~ivse~FG~k~fg~nyg~~~~a~~ 489 (564)
.+.+.....++.+..+++. .. . +.. ...+.++..+.|+...+ +-..+++|+|...+=+.-..+....+-
T Consensus 335 RpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w 414 (485)
T KOG0569|consen 335 RPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNW 414 (485)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHH
Confidence 3344444444433332221 11 1 111 23344555666665544 444678999999888777776665555
Q ss_pred hHHHhhhhhhhhhhhhcccCCCCccccCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 008482 490 VGSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSFFIMGSATLCGSLAAFGLFLRTKR 548 (564)
Q Consensus 490 iG~~lf~~~l~g~iyD~~~~~~~~~C~G~~Cy~~af~i~~~l~v~a~vl~~~l~~r~~~ 548 (564)
+..++.+. .+=.+++.-| ...|++..+.|++..+..+...-.||.
T Consensus 415 ~~~fiv~~-~fp~l~~~~g-------------~~~filF~i~~~~~~i~~~~~lPETkg 459 (485)
T KOG0569|consen 415 LSNFIVGF-AFPPLQNVIG-------------PYVFILFVIPLAIFLIYLYRYLPETKG 459 (485)
T ss_pred HHHHHHHH-HHHHHHHHhc-------------chhhHHHHHHHHHHHHHHHHhCcccCC
Confidence 55544322 2334555543 256676676776666555554444663
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.5e-08 Score=105.29 Aligned_cols=165 Identities=11% Similarity=0.047 Sum_probs=118.3
Q ss_pred HHHhhcHHHHHHHHHHHhhhhchhheecchhHHHhh---cCCCccchhHHHHHHHHHHHHhhhhhhhhhhhhhhcccCch
Q 008482 344 LQAICTLEFWILSFAMACGMGSGLATVNNISQIGGS---LGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWAR 420 (564)
Q Consensus 344 ~~~l~t~~Fwll~~~~~~~~g~gl~~i~n~~~i~~~---~g~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~R 420 (564)
++.++++.+|+..+.+++-.|.-..+.+......++ .|+++.+++..++.+...-++||++.+.+.||+++|+
T Consensus 134 ~~~~~~~~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~---- 209 (310)
T TIGR01272 134 TSAFQFTHLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGR---- 209 (310)
T ss_pred hhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHH----
Confidence 356788999999999999888888887778888864 4888888999999999999999999999999996432
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHhhhccccchhHHHHHHhhccCchhhhhhhHhhhhhhHHHhhhhhhh
Q 008482 421 PLFMVITLAAMSIGHLIIASGLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVV 500 (564)
Q Consensus 421 ~~~l~~~~~l~~i~~ll~~~~~~~~l~~~~~l~G~~~G~~~~~~P~ivse~FG~k~fg~nyg~~~~a~~iG~~lf~~~l~ 500 (564)
.+.+...+.+++.++...........+..++|++.+..+...-+...+.++ |+-++.-+++. ...+|.. +.|.+.
T Consensus 210 --~l~~~~~l~~~~~~l~~~~~~~~~~~~~~l~g~~~s~i~P~~~s~a~~~~~-~~~~~asai~~-~~~~Gg~-i~P~l~ 284 (310)
T TIGR01272 210 --YLAFNAFLAVLLSIGAALTHGYVAMWFVLALGLFNSIMFPTIFSLALNALG-RHTSQGSGILC-LAIVGGA-IVPLLQ 284 (310)
T ss_pred --HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hhhhhhHHHHH-HHHhcch-HHHHHH
Confidence 233334444444433322222223346668899999888887778888887 44566666653 3446664 466689
Q ss_pred hhhhhcccCCCCccccCCcccHHHHHHHH
Q 008482 501 GYIYDREASGEGNKCTGTHCFMLSFFIMG 529 (564)
Q Consensus 501 g~iyD~~~~~~~~~C~G~~Cy~~af~i~~ 529 (564)
|.+.|+.+ ++.+|++..
T Consensus 285 G~lad~~g------------~~~a~~v~~ 301 (310)
T TIGR01272 285 GSLADCLG------------IQLAFALPV 301 (310)
T ss_pred HHHHHhcc------------chHHHHHHH
Confidence 99999765 577777443
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.8e-08 Score=109.16 Aligned_cols=158 Identities=9% Similarity=-0.045 Sum_probs=94.2
Q ss_pred HHHHhhcHHHHHHHHHHHhhhhchhheecchhHHH-hhcCCCccchhHHHHHHHHHHHHhhhhhhhhhhhhhhcccCchh
Q 008482 343 LLQAICTLEFWILSFAMACGMGSGLATVNNISQIG-GSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARP 421 (564)
Q Consensus 343 ~~~~l~t~~Fwll~~~~~~~~g~gl~~i~n~~~i~-~~~g~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~R~ 421 (564)
++..++++.|+.+....++..... ...+...... +....++.......++.++...++-+++++++||+++|+.
T Consensus 224 ~~~~~~n~~~~~ll~~~~~~~~~~-~~~~~~~~y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~---- 298 (473)
T PRK10429 224 VALIYKNDQLSCLLGMALAYNIAS-NIINGFAIYYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRRIL---- 298 (473)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHH-HHHhhheeeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHH----
Confidence 345668888888777766654333 2222222222 2222233334455566668888999999999999975432
Q ss_pred HHHHHHHHHHHHHHHHHH-----h-cCcchHHHHHHHHHhhhccccchhHHHHHHh-------hccCchhhhhhhHhhhh
Q 008482 422 LFMVITLAAMSIGHLIIA-----S-GLPGALYAGSILVGVCYGSQWSLMPTIASEI-------FGVLQMGTIFNTITIAN 488 (564)
Q Consensus 422 ~~l~~~~~l~~i~~ll~~-----~-~~~~~l~~~~~l~G~~~G~~~~~~P~ivse~-------FG~k~fg~nyg~~~~a~ 488 (564)
+.....+.+++.+.+. . ..+..+++..++.|++.|..+.+.+++++|. .|.|.-|..|+......
T Consensus 299 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~ 376 (473)
T PRK10429 299 --WAGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVV 376 (473)
T ss_pred --HHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHH
Confidence 2222333232222211 1 1122355567788999999999999999999 88888888898876544
Q ss_pred hhHHHhhhhhhhhhhhhccc
Q 008482 489 PVGSYIFSVRVVGYIYDREA 508 (564)
Q Consensus 489 ~iG~~lf~~~l~g~iyD~~~ 508 (564)
-+|.- +++.+.|.+.|..|
T Consensus 377 K~~~a-l~~~i~g~~l~~~G 395 (473)
T PRK10429 377 KGGSA-FAAFFIGVVLGLIG 395 (473)
T ss_pred HHHHH-HHHHHHHHHHHHcC
Confidence 44432 23335666655443
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.8e-07 Score=103.52 Aligned_cols=121 Identities=14% Similarity=0.101 Sum_probs=87.4
Q ss_pred ccccHHHHhhcCCCcchhhHHHHhhhhhccc-cccchhhhcc-ccCCCCCCCccchhhhcccCcHHHHHHHHHHHHHHHH
Q 008482 33 SIYSPALKTTQHYDQTTLDTVSVFKDIGANT-GTLSGVLYTY-STSDHSSHHPRQQRLTRLLGPWVVLLVGAIQCFAGYF 110 (564)
Q Consensus 33 S~ys~~L~~~lg~sq~~~~~i~~a~~vg~~~-g~~~G~l~d~-~~~~~~~~~~~~~~~~~~~GP~~~~~iG~vl~~~Gy~ 110 (564)
+.....+++.+|+++++...+..+.....+. .+++|++.|| + |+|.++++|.+++.+|+.
T Consensus 35 ~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~------------------G~r~~~~~g~~~~~~g~~ 96 (489)
T PRK10207 35 GILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLL------------------GTKRTIVLGAIVLAIGYF 96 (489)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhcc------------------chHHHHHHHHHHHHHHHH
Confidence 3455567888999999998665555544443 5678888887 5 599999999999999999
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHhhhcCCC---CcceeeeehhhhhhhHHHHH
Q 008482 111 LMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFPTY---SGTAVGIMKGFVGLSGAILI 177 (564)
Q Consensus 111 ~~~l~~~g~i~~~~~~~l~~~~~l~G~g~~~~~ta~l~t~~k~FP~~---RG~a~Gl~~a~~GLsa~i~s 177 (564)
+..+.. .+..++....++.|.|.+...........+.||++ |+.+.++.-....+++++..
T Consensus 97 ~~~~~~------~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~ 160 (489)
T PRK10207 97 MTGMSL------LKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISL 160 (489)
T ss_pred HHHHhc------cchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHH
Confidence 866531 11122334566678899988888888889999743 46677777777777776543
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.3e-09 Score=123.42 Aligned_cols=188 Identities=12% Similarity=0.059 Sum_probs=122.7
Q ss_pred HHHhhcHHHHHHHHHHHhhhhch---hheecc-hhHHHhhcCCCccchhHHHHHHHHHHHHhhhhhhhhhhhhhhcccCc
Q 008482 344 LQAICTLEFWILSFAMACGMGSG---LATVNN-ISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWA 419 (564)
Q Consensus 344 ~~~l~t~~Fwll~~~~~~~~g~g---l~~i~n-~~~i~~~~g~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~ 419 (564)
.++-.++..|.+++.+.++.... ..+++. ++++.++.|.++.+.+.+.+++.++..+|.+++|+++||++|
T Consensus 157 ~~~~~~~~~~~l~~i~~l~~~~~g~d~~~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GR----- 231 (742)
T TIGR01299 157 QECGHGRFQWALFFVLGLALMADGVEVFVVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGR----- 231 (742)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-----
Confidence 44556777887776665554322 122333 344446789988888899999999999999999999999964
Q ss_pred hhHHHHHHHHHHHHHHHHHHh-cCcchHHHHHHHHHhhhccccchhHHHHHHhhccCchhhhhhhHhhhhhhHHHhhhhh
Q 008482 420 RPLFMVITLAAMSIGHLIIAS-GLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVR 498 (564)
Q Consensus 420 R~~~l~~~~~l~~i~~ll~~~-~~~~~l~~~~~l~G~~~G~~~~~~P~ivse~FG~k~fg~nyg~~~~a~~iG~~lf~~~ 498 (564)
...+.+.+++.+++.++... .....++++-++.|++.|+.+.+.+.+++|++..++-|..++++..+..+|.. +++.
T Consensus 232 -R~~lii~lil~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~i-la~~ 309 (742)
T TIGR01299 232 -KQCLLICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGI-YAAA 309 (742)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 34445555555555444332 23345777788999999999999999999999999999999998877777774 3443
Q ss_pred hhhhhhhcccCCC-CccccCCcccHHHHHHHHHHHHHHHHH
Q 008482 499 VVGYIYDREASGE-GNKCTGTHCFMLSFFIMGSATLCGSLA 538 (564)
Q Consensus 499 l~g~iyD~~~~~~-~~~C~G~~Cy~~af~i~~~l~v~a~vl 538 (564)
++..+....+-.. ....+...-++..|++.+..+++++++
T Consensus 310 la~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~ 350 (742)
T TIGR01299 310 MAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGA 350 (742)
T ss_pred HHHHHHHhccchhccccccccccHHHHHHHHHHHHHHHHHH
Confidence 3433322211000 000111223677777666655555433
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.4e-09 Score=123.90 Aligned_cols=126 Identities=13% Similarity=0.023 Sum_probs=98.4
Q ss_pred cccccHHHHhhcCCCcchhhHHHHhhhhhccc-cccchhhhccccCCCCCCCccchhhhcccCcHHHHHHHHHHHHHHHH
Q 008482 32 FSIYSPALKTTQHYDQTTLDTVSVFKDIGANT-GTLSGVLYTYSTSDHSSHHPRQQRLTRLLGPWVVLLVGAIQCFAGYF 110 (564)
Q Consensus 32 fS~ys~~L~~~lg~sq~~~~~i~~a~~vg~~~-g~~~G~l~d~~~~~~~~~~~~~~~~~~~~GP~~~~~iG~vl~~~Gy~ 110 (564)
.+.--++++++++++.+|...+..+.++|..+ .++.|++.||.+ +|..+.+|.+++++|.+
T Consensus 52 ~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~------------------r~~~i~~g~ll~~lg~l 113 (633)
T TIGR00805 52 VNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLH------------------RPIVIGIGCAIMGLGSF 113 (633)
T ss_pred HHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccC------------------cceEEEecHHHHHHHHH
Confidence 34445789999999999999999999999866 678888888864 77788999999999999
Q ss_pred HHHHHH--hcCC---------------------------------------C---CCCHHHHHHHHHHHhhhhhhhhHHH
Q 008482 111 LMWASV--VGLI---------------------------------------P---RPPVPVMCLFMLFAAHGMTFFNTAD 146 (564)
Q Consensus 111 ~~~l~~--~g~i---------------------------------------~---~~~~~~l~~~~~l~G~g~~~~~ta~ 146 (564)
++.+.- .+.. . ...+..+.+.-++.|+|.+..++..
T Consensus 114 l~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~ 193 (633)
T TIGR00805 114 LLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLG 193 (633)
T ss_pred HHhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcC
Confidence 875541 0000 0 0124455678899999999999999
Q ss_pred HHHHhhhcC-CCCcceeeeehhhhhhhHHH
Q 008482 147 VVTSVRNFP-TYSGTAVGIMKGFVGLSGAI 175 (564)
Q Consensus 147 l~t~~k~FP-~~RG~a~Gl~~a~~GLsa~i 175 (564)
.....+|+| ++|++..|+..+...++..+
T Consensus 194 ~~~i~d~~~~~~~~~~~~i~~~~~~iG~~l 223 (633)
T TIGR00805 194 ISYIDDFAKSKNSPLYIGILESIAVFGPAF 223 (633)
T ss_pred chhhhccCCccccHHHHHHHHHHHHhhhHH
Confidence 999999997 57999999988777777654
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.8e-07 Score=102.90 Aligned_cols=389 Identities=12% Similarity=0.015 Sum_probs=209.1
Q ss_pred HHhcCcc-cccccccHHHHhhcCCCcchhhHHHHhhhhhccccccchhhhccccCCCCCCCccchhhhcccCcHHHHHHH
Q 008482 23 QCTSGSL-YTFSIYSPALKTTQHYDQTTLDTVSVFKDIGANTGTLSGVLYTYSTSDHSSHHPRQQRLTRLLGPWVVLLVG 101 (564)
Q Consensus 23 ~l~~G~~-Y~fS~ys~~L~~~lg~sq~~~~~i~~a~~vg~~~g~~~G~l~d~~~~~~~~~~~~~~~~~~~~GP~~~~~iG 101 (564)
-++-|.. .....-.+-|++++|+|.+|+..+.....+...+-.+.|.+.|++|.. ..| .|+.++++
T Consensus 35 y~~qGl~~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l~g~l~D~~~i~-----------G~r--Rr~~l~~~ 101 (468)
T TIGR00788 35 LFVKGIAGLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKPFAGVMSDTFPLF-----------GYT--KRWYLVLS 101 (468)
T ss_pred HHHhhHHHHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-----------Ccc--chHHHHHH
Confidence 3455554 233456677888999999999888777788887877799999998621 111 45566677
Q ss_pred HHHH-HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHhhhcCCCCcceeeeehhhhhh---hHHHHH
Q 008482 102 AIQC-FAGYFLMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFPTYSGTAVGIMKGFVGL---SGAILI 177 (564)
Q Consensus 102 ~vl~-~~Gy~~~~l~~~g~i~~~~~~~l~~~~~l~G~g~~~~~ta~l~t~~k~FP~~RG~a~Gl~~a~~GL---sa~i~s 177 (564)
.++. ++.+..+ ...+ ..........++.+++.+..|.++=.-.++..|++++...++...+++. |..+-+
T Consensus 102 ~~l~~~~~~~~l-----~~~~-~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~~~~~~~~~~~s~~~~~~~~G~~vg~ 175 (468)
T TIGR00788 102 GLLGSAILYGLL-----PGKV-SSAKVAAAFIFLAALAKALYDVLVDSLYSERIRESPSAGPSLVSWMWGASATGGLISS 175 (468)
T ss_pred HHHHHHHHHHhc-----cccc-chHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhhcCCCcCCCeeeHHHHHHHHHHHHHH
Confidence 7666 3544432 1111 2233333467888999999999999999999996666655666566653 333321
Q ss_pred HHHHhhcCCCchhHHHHHHHHHHHHhhhhheeeeeccCCCCcccccchhHHHHHHHHHHHHHHHHHHhhhccCchHHHHH
Q 008482 178 QVYQTFFNNKPTSYLLLLALLASIDPLLLMWFVRICNTNEGNEKKHLNSFSLIALIVAAYLMVIIILEHIFALPFLVRVL 257 (564)
Q Consensus 178 ~i~~~~f~~~~~~~llfla~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~y~~~~~~~~~~~~~~~~~~~~ 257 (564)
.+.+. +.+..+.+ . .|... ++..+.
T Consensus 176 ----------------------~l~G~----l~~~~~~~-----~---~f~~~----a~l~ll----------------- 200 (468)
T TIGR00788 176 ----------------------LLGGP----LLDKTLTR-----I---LFLIT----AALLLL----------------- 200 (468)
T ss_pred ----------------------HHHHH----HHHhcCcc-----h---HHHHH----HHHHHH-----------------
Confidence 11111 11111111 0 01110 000000
Q ss_pred HHHHHHHHHhhhhhhhhhccCCCCCCCCcCccccCCCCCCCccchhhhccccCCCCCCCCCCCCCCCCCCCCCCCCccCC
Q 008482 258 TLILLLLLLASPLYVAIRVQGSDSDRTSETSFCEEDELTDDPHEMHAEKMHVRQDPVGYHRLPSEPDVGTDTNDATTSLW 337 (564)
Q Consensus 258 ~~~~~~~ll~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (564)
..... ...+ |++... .+++.+. +...+...... ..++..
T Consensus 201 --------~~~~~-~~~~---E~~~~~-----------~~~~~~~-----------~~~~~~~~~~~-------~~~~~~ 239 (468)
T TIGR00788 201 --------QLFVS-NLSK---ERRAFV-----------RPRIGTY-----------LEMNMALLTLG-------VLANVK 239 (468)
T ss_pred --------HHHHH-Hhcc---cccccc-----------ccccccc-----------chhhhhhhhhh-------HHHHHH
Confidence 00000 0001 100000 0000000 00000000000 000000
Q ss_pred CCCCcHHHHhhcHHHHHHHHHHHh--hhhchhheecchhHHH-hhcCCCccchhHHHHHHHHHHHHhhhhhhhhhhhhhh
Q 008482 338 GGDLDLLQAICTLEFWILSFAMAC--GMGSGLATVNNISQIG-GSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLH 414 (564)
Q Consensus 338 ~~~~t~~~~l~t~~Fwll~~~~~~--~~g~gl~~i~n~~~i~-~~~g~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~ 414 (564)
..-...++.+++++.|......++ ..+.+.+ ++.-.+. +.+|+++.......+..++.+.+|-.+.+.+.+|+
T Consensus 240 ~~~~~l~~~l~~~~i~~~l~fifl~~~~~~~~~--~~~f~~~~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~-- 315 (468)
T TIGR00788 240 VQILGLRGAIQLLEIAKPLIFIFLSYANLPGAS--GSVFCATTQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTF-- 315 (468)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHHHhhcCCCC--ceeEEEEcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhC--
Confidence 000135667888998863333333 3333332 1211111 35789988888888888877777777776665444
Q ss_pred cccCchhHHHHHHHHHHHHHHHHHH---------hcCcc--hHHHHHHHHHhhhccccchhHHHHHHhhccCchhhhhhh
Q 008482 415 VKEWARPLFMVITLAAMSIGHLIIA---------SGLPG--ALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNT 483 (564)
Q Consensus 415 ~~~~~R~~~l~~~~~l~~i~~ll~~---------~~~~~--~l~~~~~l~G~~~G~~~~~~P~ivse~FG~k~fg~nyg~ 483 (564)
+....+.+..++.+++.+... ...+. .+....++.++++|..+...-.++++.=..++-|+.|++
T Consensus 316 ----~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al 391 (468)
T TIGR00788 316 ----PYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGCESSVFAL 391 (468)
T ss_pred ----CHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCceehHHHH
Confidence 333445555555555443211 11122 244457888999999999999999999988888999999
Q ss_pred HhhhhhhHHHhhhhhhhhhhhhcccCCCCccccCCcccHHHHHHHHHHHHHHHHHHHHH
Q 008482 484 ITIANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSFFIMGSATLCGSLAAFGL 542 (564)
Q Consensus 484 ~~~a~~iG~~lf~~~l~g~iyD~~~~~~~~~C~G~~Cy~~af~i~~~l~v~a~vl~~~l 542 (564)
......+|.. +++.+.|.++|.-+.. .+-|+.-|+...+.++..++...++
T Consensus 392 ~~s~~~lg~~-v~~~~gg~l~~~~g~~-------~~~~~~~~~~i~i~~~~~l~~l~~~ 442 (468)
T TIGR00788 392 LASILHLGSS-VSGFLGVLLMETIGIT-------CDNSNNLWLLILGHSLAPLLPLPLL 442 (468)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHcCCC-------cccccchHHHHHHHHHHHHHHHHHH
Confidence 9877777775 4566788888876631 1225555555554444444333333
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=98.95 E-value=5.3e-08 Score=105.29 Aligned_cols=138 Identities=20% Similarity=0.184 Sum_probs=97.8
Q ss_pred cHHHHhhcHHHHHHHHHHHhhhhchhheecchhHHHhh-cCCCccchhHHHHHHHHHHHHhhhhhhhhhhhhhhcccCch
Q 008482 342 DLLQAICTLEFWILSFAMACGMGSGLATVNNISQIGGS-LGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWAR 420 (564)
Q Consensus 342 t~~~~l~t~~Fwll~~~~~~~~g~gl~~i~n~~~i~~~-~g~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~R 420 (564)
.+++.+++++|+.++.+.++......+..+....+.+. +|.+ ...+....+..+...++-+++++++||+++|+.
T Consensus 217 ~~~~~~~nr~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~--- 292 (428)
T PF13347_consen 217 SLRSLFRNRPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKV--- 292 (428)
T ss_pred chhhhcccchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHccceee---
Confidence 45788999999999888888644444333333344444 3444 445677778899999999999999999976543
Q ss_pred hHHHHHHHHHHHHHHHHHH-h--cCcchHHHHHHHHHhhhccccchhHHHHHHhh-------ccCchhhhhhhHhh
Q 008482 421 PLFMVITLAAMSIGHLIIA-S--GLPGALYAGSILVGVCYGSQWSLMPTIASEIF-------GVLQMGTIFNTITI 486 (564)
Q Consensus 421 ~~~l~~~~~l~~i~~ll~~-~--~~~~~l~~~~~l~G~~~G~~~~~~P~ivse~F-------G~k~fg~nyg~~~~ 486 (564)
+.....+.+++.+++. . +.+..+++..++.|+++|..+.+.+++.+|.- |.|.-|..++....
T Consensus 293 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~ 365 (428)
T PF13347_consen 293 ---YIIGLLLAALGFLLLFFLGPGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSF 365 (428)
T ss_pred ---hhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhh
Confidence 3444444444444322 2 34556788889999999999999999999876 45677888877653
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=7.6e-09 Score=112.80 Aligned_cols=175 Identities=17% Similarity=0.219 Sum_probs=137.5
Q ss_pred HHHHHHHHHHHhhhhchhheecchhHHHhhcCCCccchhHHHHHHHHHHHHhhhhhhhhhhhhhhcccCchhHHHHHHHH
Q 008482 350 LEFWILSFAMACGMGSGLATVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLA 429 (564)
Q Consensus 350 ~~Fwll~~~~~~~~g~gl~~i~n~~~i~~~~g~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~R~~~l~~~~~ 429 (564)
+.+|++++.+++......++...++.+.+++|.++.+.+..++.+.+...++.+++|+++||+++| ..+....+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r------~~~~~~~~ 83 (471)
T PRK10504 10 WQLWIVAFGFFMQSLDTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVR------NIFFTAIV 83 (471)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchH------HHHHHHHH
Confidence 468999999888776666777778889999999988888888999999999999999999999643 23334444
Q ss_pred HHHHHHHHHHh-cCcchHHHHHHHHHhhhccccchhHHHHHHhhccCchhhhhhhHhhhhhhHHHhhhhhhhhhhhhccc
Q 008482 430 AMSIGHLIIAS-GLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREA 508 (564)
Q Consensus 430 l~~i~~ll~~~-~~~~~l~~~~~l~G~~~G~~~~~~P~ivse~FG~k~fg~nyg~~~~a~~iG~~lf~~~l~g~iyD~~~ 508 (564)
+.+++.++... .....+++.-++.|++.|..+......+.|.+..++.++.+|+...+..+|.. +++.+.|.+.|..+
T Consensus 84 ~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~g~~~~g~l~~~~g 162 (471)
T PRK10504 84 LFTLGSLFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPL-LGPALGGLLVEYAS 162 (471)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHhhcc
Confidence 45444444332 23335667778999999999999999999999999999999999888788874 67778899988754
Q ss_pred CCCCccccCCcccHHHHHHHHHHHHHHHHHHHHHH
Q 008482 509 SGEGNKCTGTHCFMLSFFIMGSATLCGSLAAFGLF 543 (564)
Q Consensus 509 ~~~~~~C~G~~Cy~~af~i~~~l~v~a~vl~~~l~ 543 (564)
++..|.+...+++++.++.....
T Consensus 163 ------------w~~~f~~~~~~~~l~~~~~~~~~ 185 (471)
T PRK10504 163 ------------WHWIFLINIPVGIIGAIATLMLM 185 (471)
T ss_pred ------------HHHHHHHHHHHHHHHHHHHHHhC
Confidence 79999998888877776655443
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.2e-08 Score=107.20 Aligned_cols=173 Identities=13% Similarity=0.092 Sum_probs=128.2
Q ss_pred HHHHHHHHHHHhhhhch-hheecchhHHHhhcCCCccchhHHHHHHHHHHHHhhhhhhhhhhhhhhcccCchhHHHHHHH
Q 008482 350 LEFWILSFAMACGMGSG-LATVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITL 428 (564)
Q Consensus 350 ~~Fwll~~~~~~~~g~g-l~~i~n~~~i~~~~g~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~R~~~l~~~~ 428 (564)
..++.....+.+....+ .++....+.+.++.|.++.+.+...+...+.+.++.+.+|+++||+++| ..+....
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r------~~~~~~~ 77 (385)
T TIGR00710 4 KAFALLLGCLSILGPLGIDMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRR------PVLLLGL 77 (385)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCCh------HHHHHHH
Confidence 34444444444443333 4566677778889999998899999999999999999999999999643 3344455
Q ss_pred HHHHHHHHHHHh-cCcchHHHHHHHHHhhhccccchhHHHHHHhhccCchhhhhhhHhhhhhhHHHhhhhhhhhhhhhcc
Q 008482 429 AAMSIGHLIIAS-GLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDRE 507 (564)
Q Consensus 429 ~l~~i~~ll~~~-~~~~~l~~~~~l~G~~~G~~~~~~P~ivse~FG~k~fg~nyg~~~~a~~iG~~lf~~~l~g~iyD~~ 507 (564)
.+.+++.++... .....+++..++.|++.|........++.|.+..++-++.+|+......+|.. +++.+.+.+.|..
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~g~~~~~~l~~~~ 156 (385)
T TIGR00710 78 FIFALSSLGLALSNNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPA-VAPLLGGYILVWL 156 (385)
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHc
Confidence 555555554432 33335666778999999999999999999999989899999998887787774 5667788888865
Q ss_pred cCCCCccccCCcccHHHHHHHHHHHHHHHHHHHH
Q 008482 508 ASGEGNKCTGTHCFMLSFFIMGSATLCGSLAAFG 541 (564)
Q Consensus 508 ~~~~~~~C~G~~Cy~~af~i~~~l~v~a~vl~~~ 541 (564)
+ ++.+|.+..+.+++..++..+
T Consensus 157 ~------------~~~~~~~~~~~~~~~~~~~~~ 178 (385)
T TIGR00710 157 S------------WHAIFAFLSLAGILLSALIFF 178 (385)
T ss_pred C------------HHHHHHHHHHHHHHHHHHHHH
Confidence 4 688888887777766655444
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.5e-08 Score=107.70 Aligned_cols=171 Identities=11% Similarity=0.136 Sum_probs=133.9
Q ss_pred HHHHHHHHHHHhhhhchhheecchhHHHhhcCCCccchhHHHHHHHHHHHHhhhhhhhhhhhhhhcccCchhHHHHHHHH
Q 008482 350 LEFWILSFAMACGMGSGLATVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLA 429 (564)
Q Consensus 350 ~~Fwll~~~~~~~~g~gl~~i~n~~~i~~~~g~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~R~~~l~~~~~ 429 (564)
+++|.+.+..++......++...+..+.++.|.+.++.+..++...+...++.+.+|+++||+++ ...+.+...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~------r~~~~~~~~ 76 (382)
T PRK10091 3 KVILSLALGTFGLGMAEFGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSL------KHILLFLVA 76 (382)
T ss_pred chHHHHHHHHHHHHhhHHHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCcc------HHHHHHHHH
Confidence 56777777766665555677777888889999998888999999999999999999999999954 334555666
Q ss_pred HHHHHHHHHHh-cCcchHHHHHHHHHhhhccccchhHHHHHHhhccCchhhhhhhHhhhhhhHHHhhhhhhhhhhhhccc
Q 008482 430 AMSIGHLIIAS-GLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREA 508 (564)
Q Consensus 430 l~~i~~ll~~~-~~~~~l~~~~~l~G~~~G~~~~~~P~ivse~FG~k~fg~nyg~~~~a~~iG~~lf~~~l~g~iyD~~~ 508 (564)
+.+++.++... +....+++.-.+.|++.|......+.++.|++..++.+...+....+..+|.. +++++.+.+.|..+
T Consensus 77 ~~~~~~~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~g~~l~~~l~~~~g 155 (382)
T PRK10091 77 LCVIGNAMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANL-LGIPLGTYLSQEFS 155 (382)
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHH-HhccHHHHHhhhcc
Confidence 66666555443 33445777788999999999999999999999998889889988888888875 46667888887644
Q ss_pred CCCCccccCCcccHHHHHHHHHHHHHHHHHH
Q 008482 509 SGEGNKCTGTHCFMLSFFIMGSATLCGSLAA 539 (564)
Q Consensus 509 ~~~~~~C~G~~Cy~~af~i~~~l~v~a~vl~ 539 (564)
++.+|.+..+.+++..+..
T Consensus 156 ------------wr~~f~~~~~~~~~~~~~~ 174 (382)
T PRK10091 156 ------------WRYTFLLIAVFNIAVLASI 174 (382)
T ss_pred ------------HHHHHHHHHHHHHHHHHHH
Confidence 6899998887776665443
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.4e-08 Score=108.79 Aligned_cols=150 Identities=9% Similarity=0.113 Sum_probs=120.3
Q ss_pred heecchhHHHhhcCCCccchhHHHHHHHHHHHHhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHh-cCcchH
Q 008482 368 ATVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIAS-GLPGAL 446 (564)
Q Consensus 368 ~~i~n~~~i~~~~g~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~R~~~l~~~~~l~~i~~ll~~~-~~~~~l 446 (564)
+....+.++.++.|.++++.+..+++..+...++++.+|.++||++| ...+....++.+++.++... .+...+
T Consensus 38 ~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~gr------r~~~~~~~~~~~~~~~~~~~~~~~~~l 111 (394)
T PRK10213 38 LPVSLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDR------RYVVILFAVLLTLSCLLVSFANSFSLL 111 (394)
T ss_pred HHHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCc------HHHHHHHHHHHHHHHHHHHHHChHHHH
Confidence 44556788889999999999999999999999999999999999954 44556666666666655443 233457
Q ss_pred HHHHHHHHhhhccccchhHHHHHHhhccCchhhhhhhHhhhhhhHHHhhhhhhhhhhhhcccCCCCccccCCcccHHHHH
Q 008482 447 YAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSFF 526 (564)
Q Consensus 447 ~~~~~l~G~~~G~~~~~~P~ivse~FG~k~fg~nyg~~~~a~~iG~~lf~~~l~g~iyD~~~~~~~~~C~G~~Cy~~af~ 526 (564)
++.-.+.|++.|..+...+.+++|+|..|+.++..++...+..+|.. .++.+.+.+.+..+ ++..|.
T Consensus 112 ~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~-ig~~l~~~l~~~~g------------w~~~f~ 178 (394)
T PRK10213 112 LIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALV-IAAPLGSFLGELIG------------WRNVFN 178 (394)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhcC------------HHHHHH
Confidence 77778999999999999999999999999999999999888888774 57778888888654 688998
Q ss_pred HHHHHHHHHH
Q 008482 527 IMGSATLCGS 536 (564)
Q Consensus 527 i~~~l~v~a~ 536 (564)
+.+.++++..
T Consensus 179 ~~~~l~~~~~ 188 (394)
T PRK10213 179 AAAVMGVLCI 188 (394)
T ss_pred HHHHHHHHHH
Confidence 8776665543
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=98.85 E-value=3.8e-08 Score=108.34 Aligned_cols=170 Identities=16% Similarity=0.183 Sum_probs=131.3
Q ss_pred HHHHHHHHHHHhhhhchhheecchhHHHhh---cCCCccchhHHHHHHHHHHHHhhhhhhhhhhh-hhhcccCchhHHHH
Q 008482 350 LEFWILSFAMACGMGSGLATVNNISQIGGS---LGYSSFETSSLISLWSIWNFLGRFGAGYVSDY-FLHVKEWARPLFMV 425 (564)
Q Consensus 350 ~~Fwll~~~~~~~~g~gl~~i~n~~~i~~~---~g~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~-l~~~~~~~R~~~l~ 425 (564)
+.+|.+++..++-..+-.++..++..+.++ +|++..+++..++.+++.+.++++.+|+++|| ++ |.+.+.
T Consensus 10 ~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G------~~~~l~ 83 (475)
T TIGR00924 10 KPLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWG------TKKTMV 83 (475)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcc------hHHHHH
Confidence 357888877777666656677788888765 78998899999999999999999999999999 74 444566
Q ss_pred HHHHHHHHHHHHHHhc-CcchHHHHHHHHHhhhccccchhHHHHHHhhccCc---hhhhhhhHhhhhhhHHHhhhhhhhh
Q 008482 426 ITLAAMSIGHLIIASG-LPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQ---MGTIFNTITIANPVGSYIFSVRVVG 501 (564)
Q Consensus 426 ~~~~l~~i~~ll~~~~-~~~~l~~~~~l~G~~~G~~~~~~P~ivse~FG~k~---fg~nyg~~~~a~~iG~~lf~~~l~g 501 (564)
+..++.+++.+++... .+..++++..+.|++.|......+++++|.|..++ -+..+++.+.+..+|.. +++.+.|
T Consensus 84 ~~~~~~~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~-ig~~l~g 162 (475)
T TIGR00924 84 LGGIVLMLGHFMLAMSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSF-ISPLLAG 162 (475)
T ss_pred HHHHHHHHHHHHHHhcccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHH-HHHHHHH
Confidence 6677777777665533 23346667778899999999999999999997654 56677887777777774 5777889
Q ss_pred hhhhcccCCCCccccCCcccHHHHHHHHHHHHHHHHH
Q 008482 502 YIYDREASGEGNKCTGTHCFMLSFFIMGSATLCGSLA 538 (564)
Q Consensus 502 ~iyD~~~~~~~~~C~G~~Cy~~af~i~~~l~v~a~vl 538 (564)
.+.|..+ |+.+|.+.++.++++.+.
T Consensus 163 ~l~~~~g------------~~~~f~~~~~~~~~~~l~ 187 (475)
T TIGR00924 163 VIAENYG------------YHVGFNLAAVGMVIGLLT 187 (475)
T ss_pred HHHHhcC------------hHHHHHHHHHHHHHHHHH
Confidence 9988643 899999887666666533
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=3.5e-08 Score=105.74 Aligned_cols=177 Identities=12% Similarity=0.037 Sum_probs=126.5
Q ss_pred HHHHHHHHHHHhhhhchhheecchhHHHh-hcCCCccchhHHHHHHHHHHHHhhhhhhhhhhhhhhcccCchhHHHHHHH
Q 008482 350 LEFWILSFAMACGMGSGLATVNNISQIGG-SLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITL 428 (564)
Q Consensus 350 ~~Fwll~~~~~~~~g~gl~~i~n~~~i~~-~~g~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~R~~~l~~~~ 428 (564)
+++|++.+..++......++.+-+++..+ +.|+++.+.+..+++..+...++++..|+++||+++|+ .+.+..
T Consensus 7 ~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~------~~~~~~ 80 (395)
T PRK10054 7 RSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKR------YMLLAI 80 (395)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcch------hHHHHH
Confidence 46898888888876555555555666664 57999989999999999999999999999999997542 333444
Q ss_pred HHHHHHHHHHHh-cCcchHHHHHHHHHhhhccccchhHHHHHHhhccCchhhhhhhHhhhhhhHHHhhhhhhhhhhhhcc
Q 008482 429 AAMSIGHLIIAS-GLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDRE 507 (564)
Q Consensus 429 ~l~~i~~ll~~~-~~~~~l~~~~~l~G~~~G~~~~~~P~ivse~FG~k~fg~nyg~~~~a~~iG~~lf~~~l~g~iyD~~ 507 (564)
++..++.+++.. +....+++...+.|.+++......+..++|.++.++.++.+|+......+|.. +++.+.+.+++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~-igp~l~~~l~~~- 158 (395)
T PRK10054 81 TAFASGFIAIPLVNNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWT-VGPPLGTLLVMQ- 158 (395)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHh-
Confidence 444455444432 22223444455677777777778888999999998899998888777777664 566678887752
Q ss_pred cCCCCccccCCcccHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008482 508 ASGEGNKCTGTHCFMLSFFIMGSATLCGSLAAFGLFLRT 546 (564)
Q Consensus 508 ~~~~~~~C~G~~Cy~~af~i~~~l~v~a~vl~~~l~~r~ 546 (564)
+ ++.+|.+.++++++++++..+...|.
T Consensus 159 -g-----------~~~~f~~~~~~~~i~~i~~~~~~~~~ 185 (395)
T PRK10054 159 -S-----------INLPFWLAAICSAFPLVFIQIWVQRS 185 (395)
T ss_pred -c-----------cCcHHHHHHHHHHHHHHHHHHHHhcc
Confidence 2 68899988888877765554433333
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.1e-06 Score=97.00 Aligned_cols=185 Identities=15% Similarity=0.144 Sum_probs=139.2
Q ss_pred CcHHHHhhcHHHHHHHHHHHhhhhchhheecchhHHHh-hcCCCccchhHHHHHHHHHHHHhhhhhhhhhhhhhhcccCc
Q 008482 341 LDLLQAICTLEFWILSFAMACGMGSGLATVNNISQIGG-SLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWA 419 (564)
Q Consensus 341 ~t~~~~l~t~~Fwll~~~~~~~~g~gl~~i~n~~~i~~-~~g~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~ 419 (564)
.|++++-|.++.+.+.+++++-.-.-.+++...+-+++ .+|+++.+.....-+..+.++.|-+++|++.||++.|.+
T Consensus 272 ~t~k~~~~~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~-- 349 (477)
T PF11700_consen 272 RTFKEIRKLRQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTK-- 349 (477)
T ss_pred HHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchh--
Confidence 47788888899998888888765444444444444444 589998887778888899999999999999999985421
Q ss_pred hhHHHHHHHHHHHHHHHHHH--------hcCcchHHHHHHHHHhhhccccchhHHHHHHhhccCchhhhhhhHhhhhhhH
Q 008482 420 RPLFMVITLAAMSIGHLIIA--------SGLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVG 491 (564)
Q Consensus 420 R~~~l~~~~~l~~i~~ll~~--------~~~~~~l~~~~~l~G~~~G~~~~~~P~ivse~FG~k~fg~nyg~~~~a~~iG 491 (564)
...+........+...-+. ...+..+|+..+++|+..|+..+.--++.+|+=-..+-++-||+..+..=..
T Consensus 350 -~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~s 428 (477)
T PF11700_consen 350 -RTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKAS 428 (477)
T ss_pred -HHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHH
Confidence 2222222222222222111 2334469999999999999999999999999998888899999998777777
Q ss_pred HHhhhhhhhhhhhhcccCCCCccccCCcccHHHHHHHHHHHHHHHHHHH
Q 008482 492 SYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSFFIMGSATLCGSLAAF 540 (564)
Q Consensus 492 ~~lf~~~l~g~iyD~~~~~~~~~C~G~~Cy~~af~i~~~l~v~a~vl~~ 540 (564)
++ +||.++|.+-|.+++ .+.+|....++.++++++-.
T Consensus 429 s~-lGPll~g~i~~~tg~-----------~r~g~~~l~~lf~~gl~ll~ 465 (477)
T PF11700_consen 429 SW-LGPLLFGLITDATGS-----------QRYGFLFLLVLFLIGLILLF 465 (477)
T ss_pred HH-HHHHHHHHHHHHhCC-----------chhHHHHHHHHHHHHHHHHh
Confidence 75 578889999999987 79999999999999885553
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=98.83 E-value=8.4e-09 Score=106.46 Aligned_cols=154 Identities=19% Similarity=0.235 Sum_probs=122.2
Q ss_pred eecchh-HHHhhcCCCccchhHHHHHHHHHHHHhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHh-cCcchH
Q 008482 369 TVNNIS-QIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIAS-GLPGAL 446 (564)
Q Consensus 369 ~i~n~~-~i~~~~g~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~R~~~l~~~~~l~~i~~ll~~~-~~~~~l 446 (564)
+...+. .+.++.|.++.+.+...++..+.+.++.+.+|+++||+++ ...+....++.+++.++... .....+
T Consensus 15 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~------r~~l~~~~~~~~~~~~~~~~~~~~~~~ 88 (352)
T PF07690_consen 15 ISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGR------RRVLIIGLLLFALGSLLLAFASNFWLL 88 (352)
T ss_dssp HHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-H------HHHHHHHHHHHHHHHHHHHHHCCHHHH
T ss_pred HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC------eeeEeehhhhhhhHHHHhhhhhhHHHH
Confidence 334455 5677889999999999999999999999999999999953 33566666666666433332 232257
Q ss_pred HHHHHHHHhhhccccchhHHHHHHhhccCchhhhhhhHhhhhhhHHHhhhhhhhhhhhhcccCCCCccccCCcccHHHHH
Q 008482 447 YAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSFF 526 (564)
Q Consensus 447 ~~~~~l~G~~~G~~~~~~P~ivse~FG~k~fg~nyg~~~~a~~iG~~lf~~~l~g~iyD~~~~~~~~~C~G~~Cy~~af~ 526 (564)
+++.++.|++.|........++.|.+..|+.++..++...+..+|.. +++.+.+.++|..+ ++.+|+
T Consensus 89 ~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~-~g~~l~~~l~~~~~------------~~~~~~ 155 (352)
T PF07690_consen 89 LIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSI-LGPLLGGFLISYFG------------WRWAFL 155 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHH-HHHHHHHHCCCHCH------------HCCHHH
T ss_pred hhhccccccccccccccccccccccchhhhhhhccccccchhhhhhh-cccchhhhhhhccc------------cccccc
Confidence 77889999999999999999999999999999999999999999885 67778898886644 678899
Q ss_pred HHHHHHHHHHHHHHH
Q 008482 527 IMGSATLCGSLAAFG 541 (564)
Q Consensus 527 i~~~l~v~a~vl~~~ 541 (564)
+.+++++++.++..+
T Consensus 156 ~~~~~~~~~~il~~~ 170 (352)
T PF07690_consen 156 ISAILSLIAAILFIL 170 (352)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred cccchhhhhhhhHhh
Confidence 999888888764333
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.3e-08 Score=105.44 Aligned_cols=171 Identities=9% Similarity=-0.064 Sum_probs=125.0
Q ss_pred HHHHHHHHHhhhhchhheecchhHHHhhcCCCccchhHHHHHHHHHHHHhhhhhhhhhhhhhhcccCchhHHHHHHHHHH
Q 008482 352 FWILSFAMACGMGSGLATVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAM 431 (564)
Q Consensus 352 Fwll~~~~~~~~g~gl~~i~n~~~i~~~~g~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~R~~~l~~~~~l~ 431 (564)
||.++...++......+....++.+..+.+.++.+.+...++..+...++.+.+|+++||++|| ..+.....+.
T Consensus 1 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r------~~~~~~~~~~ 74 (365)
T TIGR00900 1 FRLLFAAQLISLIGTAITQVALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRK------KVMIGADLIR 74 (365)
T ss_pred CeehHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchh------HHHHHHHHHH
Confidence 4556666555544444444556667778888888889999999999999999999999999643 3344444444
Q ss_pred HHHHHHHH-hc-----CcchHHHHHHHHHhhhccccchhHHHHHHhhccCchhhhhhhHhhhhhhHHHhhhhhhhhhhhh
Q 008482 432 SIGHLIIA-SG-----LPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYD 505 (564)
Q Consensus 432 ~i~~ll~~-~~-----~~~~l~~~~~l~G~~~G~~~~~~P~ivse~FG~k~fg~nyg~~~~a~~iG~~lf~~~l~g~iyD 505 (564)
.++.++.. .. ....+++...+.|++.|.......++++|++..++.++.+|+...+..+|.. .++.+.+.+++
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~g~~l~~~l~~ 153 (365)
T TIGR00900 75 AVLVAVLPFVALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYI-VGPGIGGLMYA 153 (365)
T ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHH
Confidence 33333221 11 2334667788889999999999999999999999999999999988888884 67778888888
Q ss_pred cccCCCCccccCCcccHHHHHHHHHHHHHHHHHHHH
Q 008482 506 REASGEGNKCTGTHCFMLSFFIMGSATLCGSLAAFG 541 (564)
Q Consensus 506 ~~~~~~~~~C~G~~Cy~~af~i~~~l~v~a~vl~~~ 541 (564)
..+ ++.+|.+..+.++++.++...
T Consensus 154 ~~g------------~~~~~~~~~~~~~~~~~~~~~ 177 (365)
T TIGR00900 154 TLG------------IKWAIWVDAVGFAISALLIVS 177 (365)
T ss_pred Hhh------------HHHHHHHHHHHHHHHHHHHHh
Confidence 754 588888877766666544433
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.2e-06 Score=94.56 Aligned_cols=160 Identities=18% Similarity=0.188 Sum_probs=103.0
Q ss_pred cHHHHhhcHHHHHHHHHHHhhhhchhheecchh-HHHhhcC-CCccchhHHHHHHHHHHHHhhhhhhhhhhhhhhcccCc
Q 008482 342 DLLQAICTLEFWILSFAMACGMGSGLATVNNIS-QIGGSLG-YSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWA 419 (564)
Q Consensus 342 t~~~~l~t~~Fwll~~~~~~~~g~gl~~i~n~~-~i~~~~g-~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~ 419 (564)
+..+++|+|++..+.+..++.. ......++.. ...+++| ++...... +.+ .+.+.-+..=.+++|+.+|++..
T Consensus 199 ~~~~llk~~~~~~Fll~~~l~~-~~~~~~~~f~~~yl~~~gg~~~~~~g~---~~~-l~~~aEi~~f~~~~~~~~r~g~~ 273 (400)
T PF03825_consen 199 DALKLLKNPRFLVFLLAAFLIG-ISHAAYYTFFSIYLQELGGYSGSTIGI---LWA-LGVVAEIPFFFFSGRFLKRFGIK 273 (400)
T ss_pred HHHHHhcCccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcccchhhHHHH---HHH-HHHHHHHHHHHHHHHHHHhcCHH
Confidence 4468999999987766665554 3444444444 4568887 44332222 222 34467778888889998887632
Q ss_pred hhHHHHHHHHHHHHHHHHHHhc-CcchHHHH-----HHHHHhhhccccchhHHHHHHhhccCchhhhhhhHh-hhhhhHH
Q 008482 420 RPLFMVITLAAMSIGHLIIASG-LPGALYAG-----SILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTIT-IANPVGS 492 (564)
Q Consensus 420 R~~~l~~~~~l~~i~~ll~~~~-~~~~l~~~-----~~l~G~~~G~~~~~~P~ivse~FG~k~fg~nyg~~~-~a~~iG~ 492 (564)
+++.+..+..++=..+.+.. .|....+. -.+-|++||..+......+.+....+.-++--++.. +..++|.
T Consensus 274 --~ll~~a~~~~~vR~~l~a~~~~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~ 351 (400)
T PF03825_consen 274 --WLLLLALVAYAVRWLLYAYFSDPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGG 351 (400)
T ss_pred --HHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHH
Confidence 33444444444444444433 33222222 245799999999999999999997777677777665 4567777
Q ss_pred HhhhhhhhhhhhhcccC
Q 008482 493 YIFSVRVVGYIYDREAS 509 (564)
Q Consensus 493 ~lf~~~l~g~iyD~~~~ 509 (564)
. .+..+.|++||+.+.
T Consensus 352 ~-iG~~igG~l~~~~g~ 367 (400)
T PF03825_consen 352 A-IGSLIGGWLYDAFGA 367 (400)
T ss_pred H-HHHHHHHHHHHHhcc
Confidence 4 466689999999764
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.1e-07 Score=105.41 Aligned_cols=176 Identities=15% Similarity=0.167 Sum_probs=125.9
Q ss_pred HHHhhcH-HHHHHHHHHHhhhhchhheecchhHHH-hhcCCCccchhHHHHHHHHHHHHhhhhhhhhhhh-hhhcccCch
Q 008482 344 LQAICTL-EFWILSFAMACGMGSGLATVNNISQIG-GSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDY-FLHVKEWAR 420 (564)
Q Consensus 344 ~~~l~t~-~Fwll~~~~~~~~g~gl~~i~n~~~i~-~~~g~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~-l~~~~~~~R 420 (564)
.+.++.+ .+|.++...++...+-..+...+.... +++|.++.++...++.+........+++|+++|| +++|
T Consensus 14 ~~~~~~p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r----- 88 (500)
T PRK09584 14 LNAFKQPKAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTK----- 88 (500)
T ss_pred hhhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchH-----
Confidence 3455666 599999888887666656666677776 5689988777777777776666667899999999 5543
Q ss_pred hHHHHHHHHHHHHHHHHHHhc--CcchHHHHHHHHHhhhccccchhHHHHHHhhccCc--hhhhhhhHhhhhhhHHHhhh
Q 008482 421 PLFMVITLAAMSIGHLIIASG--LPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQ--MGTIFNTITIANPVGSYIFS 496 (564)
Q Consensus 421 ~~~l~~~~~l~~i~~ll~~~~--~~~~l~~~~~l~G~~~G~~~~~~P~ivse~FG~k~--fg~nyg~~~~a~~iG~~lf~ 496 (564)
..+....++.+++.+++... ....++++-.+.|++.|......+++++|.|..++ .+..+++.+.+..+|+. ++
T Consensus 89 -~~~~~g~~~~~ig~~l~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~-~g 166 (500)
T PRK09584 89 -RVIMLGAIVLAIGYALVAWSGHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSF-FS 166 (500)
T ss_pred -HHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHH-HH
Confidence 34555566666665555432 22235556678899999999999999999996543 34467777777777774 67
Q ss_pred hhhhhhhhhcccCCCCccccCCcccHHHHHHHHHHHHHHHHH
Q 008482 497 VRVVGYIYDREASGEGNKCTGTHCFMLSFFIMGSATLCGSLA 538 (564)
Q Consensus 497 ~~l~g~iyD~~~~~~~~~C~G~~Cy~~af~i~~~l~v~a~vl 538 (564)
+.+.|++.|..+ |+..|.+..+..+++++.
T Consensus 167 p~i~g~l~~~~g------------~~~~F~i~~i~~~i~~i~ 196 (500)
T PRK09584 167 MLATPWLAAKYG------------WSVAFALSVVGMLITVVN 196 (500)
T ss_pred HHHHHHHHHhhC------------HHHHHHHHHHHHHHHHHH
Confidence 778999988754 799999887666666533
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=5e-08 Score=105.74 Aligned_cols=170 Identities=19% Similarity=0.155 Sum_probs=124.0
Q ss_pred hcHHHHHHHHHHHhhhhchhheecchhHHHhhcCCCccchhHHHHHHHHHHHHhhhhhhhhhhhhhhcccCchhHHHHHH
Q 008482 348 CTLEFWILSFAMACGMGSGLATVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVIT 427 (564)
Q Consensus 348 ~t~~Fwll~~~~~~~~g~gl~~i~n~~~i~~~~g~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~R~~~l~~~ 427 (564)
+...++..++.+++.......+...+.++.+++|.++.+.+..+++..+...++++.+|+++||+++| +.+.+.
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r------~~~~~~ 94 (434)
T PRK11663 21 RRHILITMYLGYALFYFTRKSFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNAR------YFMGIG 94 (434)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCc------hhHHHH
Confidence 33445555555554433333334456778888999988889999999999999999999999999643 345555
Q ss_pred HHHHHHHHHHHHhc-CcchHHHHHHHHHhhhccccchhHHHHHHhhccCchhhhhhhHhhhhhhHHHhhhhhhhhhhhhc
Q 008482 428 LAAMSIGHLIIASG-LPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDR 506 (564)
Q Consensus 428 ~~l~~i~~ll~~~~-~~~~l~~~~~l~G~~~G~~~~~~P~ivse~FG~k~fg~nyg~~~~a~~iG~~lf~~~l~g~iyD~ 506 (564)
.++.+++.++.... ....+++.-++.|++.|..+.....++.|+|..|+.|+..|+...+..+|.. +++.+.|.++|.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~-~~~~~~~~l~~~ 173 (434)
T PRK11663 95 LIATGIINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGA-LIPLVVGAIALH 173 (434)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHc
Confidence 55556565554332 2233445556789999999999999999999988999999999888888885 567778888886
Q ss_pred ccCCCCccccCCcccHHHHHHHHHHHHHHH
Q 008482 507 EASGEGNKCTGTHCFMLSFFIMGSATLCGS 536 (564)
Q Consensus 507 ~~~~~~~~C~G~~Cy~~af~i~~~l~v~a~ 536 (564)
.+ ++..|.+.++++++..
T Consensus 174 ~g------------w~~~f~~~~i~~~~~~ 191 (434)
T PRK11663 174 YG------------WRYGMMIAGIIAIVVG 191 (434)
T ss_pred cc------------HHHHHHHHHHHHHHHH
Confidence 54 7899988776665544
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=98.80 E-value=3.2e-07 Score=99.75 Aligned_cols=128 Identities=16% Similarity=0.018 Sum_probs=100.6
Q ss_pred HhcCcccccccccHHHHhhcCCCcch-hhHHHHhhhhhccc-cccchhhhccccCCCCCCCccchhhhcccCcHHHHHHH
Q 008482 24 CTSGSLYTFSIYSPALKTTQHYDQTT-LDTVSVFKDIGANT-GTLSGVLYTYSTSDHSSHHPRQQRLTRLLGPWVVLLVG 101 (564)
Q Consensus 24 l~~G~~Y~fS~ys~~L~~~lg~sq~~-~~~i~~a~~vg~~~-g~~~G~l~d~~~~~~~~~~~~~~~~~~~~GP~~~~~iG 101 (564)
+..-.--..|+-.|.|++.+|+|.+| .+.|..+...+=.. -+++|++.||+| +|+++.++
T Consensus 37 F~~e~R~n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG------------------~K~vL~l~ 98 (511)
T TIGR00806 37 FMAQFRPGESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLR------------------YKPVLVLQ 98 (511)
T ss_pred HHHHhhchHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhC------------------chHHHHHH
Confidence 33334456677889999999999999 66665555555433 567787778764 99999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHhhhcC-CCCcceeeeehhhhhhhHHHHH
Q 008482 102 AIQCFAGYFLMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFP-TYSGTAVGIMKGFVGLSGAILI 177 (564)
Q Consensus 102 ~vl~~~Gy~~~~l~~~g~i~~~~~~~l~~~~~l~G~g~~~~~ta~l~t~~k~FP-~~RG~a~Gl~~a~~GLsa~i~s 177 (564)
++...+-++++-. . .+++.+.+.=++-|.+.+... +......+||| ++|++++|+..++.-+|.++-.
T Consensus 99 ~l~Wsl~t~L~~f-----a--~Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~ 167 (511)
T TIGR00806 99 ALSFVCVWLLLLL-----G--TSVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSS 167 (511)
T ss_pred HHHHHHHHHHHHH-----H--HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998888887433 2 246677788888899999999 99999999998 5799999999998888887753
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.5e-07 Score=100.17 Aligned_cols=171 Identities=12% Similarity=0.131 Sum_probs=124.6
Q ss_pred HHHHHHHHHHhhhhchhheecchhHHHhhcCCCccchhHHHHHHHHHHHHhhhhhhhhhhhhhhcccCchhHHHHHHHHH
Q 008482 351 EFWILSFAMACGMGSGLATVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAA 430 (564)
Q Consensus 351 ~Fwll~~~~~~~~g~gl~~i~n~~~i~~~~g~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~R~~~l~~~~~l 430 (564)
..|+......+.......++..+.++.+++|.++.+.+..++...+...++.+.+|+++||++|| +.+.....+
T Consensus 9 ~l~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr------~~~~~~~~~ 82 (394)
T PRK11652 9 LLFMLVLLVAVGQMAQTIYVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRR------PVILVGMSI 82 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCCh------HHHHHHHHH
Confidence 34555555555555555666778889999999998899999999999999999999999999643 334445555
Q ss_pred HHHHHHHHHh-cCcchHHHHHHHHHhhhccccchhHHHHHHhhccCchhhhhhhHhhhhhhHHHhhhhhhhhhhhhcccC
Q 008482 431 MSIGHLIIAS-GLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREAS 509 (564)
Q Consensus 431 ~~i~~ll~~~-~~~~~l~~~~~l~G~~~G~~~~~~P~ivse~FG~k~fg~nyg~~~~a~~iG~~lf~~~l~g~iyD~~~~ 509 (564)
.+++.++... .....+++...+.|++.|........++.|.+..++.+...++..++..++.. +++.+.|.+.|..+
T Consensus 83 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~i~~~l~~~~g- 160 (394)
T PRK11652 83 FILGTLVALFAHSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPL-LAPLIGGLLTTLFG- 160 (394)
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhccC-
Confidence 5555444332 22334666778889998887777778889999888888888888877777774 57777888877644
Q ss_pred CCCccccCCcccHHHHHHHHHHHHHHHHHHH
Q 008482 510 GEGNKCTGTHCFMLSFFIMGSATLCGSLAAF 540 (564)
Q Consensus 510 ~~~~~C~G~~Cy~~af~i~~~l~v~a~vl~~ 540 (564)
++.+|.+..++.++..++..
T Consensus 161 -----------~~~~f~~~~~~~~~~~~~~~ 180 (394)
T PRK11652 161 -----------WRACYLFLLLLGAGVTFSMA 180 (394)
T ss_pred -----------hHHHHHHHHHHHHHHHHHHH
Confidence 68889887766655443333
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=98.76 E-value=6.4e-07 Score=99.77 Aligned_cols=152 Identities=14% Similarity=0.154 Sum_probs=91.8
Q ss_pred hhHHHh-hcCCCccchhHHHHHHHHHHHHhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHhcCc-chHHHHH
Q 008482 373 ISQIGG-SLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIASGLP-GALYAGS 450 (564)
Q Consensus 373 ~~~i~~-~~g~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~R~~~l~~~~~l~~i~~ll~~~~~~-~~l~~~~ 450 (564)
+.-+++ .+|.++..-+.+.+.++++..+|-++.+.+.+++ ++...+....++.+++++.+....+ ....++.
T Consensus 241 lPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~------~~~~lv~~~~~~~a~~~~~lal~~~~~~~~~~l 314 (524)
T PF05977_consen 241 LPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRL------SSRRLVLLASLLFALALLLLALSPSFWLALIAL 314 (524)
T ss_pred hhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhccc------CcchhhHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 444444 3677766667777777777777766666655544 2333344455555655555544322 2344556
Q ss_pred HHHHhhhccccchhHHHHHHhhccCchhhhhhhHhhhhhhHHHhhhhhhhhhhhhcccCCCCccccCCcccHHHHHHHHH
Q 008482 451 ILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSFFIMGS 530 (564)
Q Consensus 451 ~l~G~~~G~~~~~~P~ivse~FG~k~fg~nyg~~~~a~~iG~~lf~~~l~g~iyD~~~~~~~~~C~G~~Cy~~af~i~~~ 530 (564)
.+.|++.......+-+++-+.=-.+.-|+.+++..+....+. .+|..+.|.+-|..+. ..++.++++
T Consensus 315 ~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~-~lGsll~G~la~~~g~------------~~al~~a~~ 381 (524)
T PF05977_consen 315 FLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGM-PLGSLLWGFLADHFGV------------RTALLIAGA 381 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHhCH------------HHHHHHHHH
Confidence 778888888877777777776666677887776543322222 2344468888888764 777777766
Q ss_pred HHHHHHHHHHHHH
Q 008482 531 ATLCGSLAAFGLF 543 (564)
Q Consensus 531 l~v~a~vl~~~l~ 543 (564)
..+++.++.....
T Consensus 382 ~lll~~~~~~~~~ 394 (524)
T PF05977_consen 382 ALLLSALIALRFP 394 (524)
T ss_pred HHHHHHHHHHHhc
Confidence 5555554444433
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.8e-07 Score=98.63 Aligned_cols=166 Identities=15% Similarity=0.160 Sum_probs=118.1
Q ss_pred HHHHHHHHhhhhchhheecchhHHHhhcCCCccchhHHHHHHHHHHHHhhhhhhhhhhhhhhcccCchhHHHHHHHHHHH
Q 008482 353 WILSFAMACGMGSGLATVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMS 432 (564)
Q Consensus 353 wll~~~~~~~~g~gl~~i~n~~~i~~~~g~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~R~~~l~~~~~l~~ 432 (564)
...++.+++......++.....++.++.|.++.+.+...++..+...++.+.+|+++||+++| ..+.+..++.+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r------~~~~~~~~~~~ 88 (405)
T TIGR00891 15 SAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRR------LPMVTSIVLFS 88 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccH------HHHHHHHHHHH
Confidence 344444444433333333445666678899988899999999999999999999999999643 33444555555
Q ss_pred HHHHHHHh-cCcchHHHHHHHHHhhhccccchhHHHHHHhhccCchhhhhhhHhhhhhhHHHhhhhhhhhhhhhcccCCC
Q 008482 433 IGHLIIAS-GLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASGE 511 (564)
Q Consensus 433 i~~ll~~~-~~~~~l~~~~~l~G~~~G~~~~~~P~ivse~FG~k~fg~nyg~~~~a~~iG~~lf~~~l~g~iyD~~~~~~ 511 (564)
++.++... .+...+++.-.+.|++.|..+....+.+.|.+..++-++..|+...+..+|.. +++.+.+.+.+..+.
T Consensus 89 ~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~l~~~l~~~~~~-- 165 (405)
T TIGR00891 89 AGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAV-VAAQVYSLVVPVWGD-- 165 (405)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCc--
Confidence 55544432 23335677788999999999999999999999999999999999888888885 566677777665432
Q ss_pred CccccCCcccHHHHHHHHHHHHHH
Q 008482 512 GNKCTGTHCFMLSFFIMGSATLCG 535 (564)
Q Consensus 512 ~~~C~G~~Cy~~af~i~~~l~v~a 535 (564)
-++..|.+.....++.
T Consensus 166 --------~w~~~f~~~~~~~~~~ 181 (405)
T TIGR00891 166 --------GWRALFFISILPIIFA 181 (405)
T ss_pred --------cHHHHHHHHHHHHHHH
Confidence 1677777655444443
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.8e-07 Score=95.83 Aligned_cols=170 Identities=19% Similarity=0.254 Sum_probs=128.8
Q ss_pred HHHHHHHHhhhhchhheecchhHHHhhcCCCccchhHHHHHHHHHHHHhhhhhhhhhhhhhhcccCchhHHHHHHHHHHH
Q 008482 353 WILSFAMACGMGSGLATVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMS 432 (564)
Q Consensus 353 wll~~~~~~~~g~gl~~i~n~~~i~~~~g~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~R~~~l~~~~~l~~ 432 (564)
|.+....++..............+.++.|.++.+.+...++..+...++.+.+|+++||++||+ .+.....+..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~------~~~~~~~~~~ 75 (352)
T cd06174 2 LLLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRR------VLLLGLLLFA 75 (352)
T ss_pred HHHHHHHHHHHHhhhhhHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCch------hhHHHHHHHH
Confidence 4555555555444444555566777788998888899999999999999999999999996433 4555566666
Q ss_pred HHHHHHHh-cCcchHHHHHHHHHhhhccccchhHHHHHHhhccCchhhhhhhHhhhhhhHHHhhhhhhhhhhhhcccCCC
Q 008482 433 IGHLIIAS-GLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASGE 511 (564)
Q Consensus 433 i~~ll~~~-~~~~~l~~~~~l~G~~~G~~~~~~P~ivse~FG~k~fg~nyg~~~~a~~iG~~lf~~~l~g~iyD~~~~~~ 511 (564)
++.++... .....+++...+.|++.|..+...++++.|++..|+.++.+++......+|.. +++.+.+.+.|..+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~--- 151 (352)
T cd06174 76 LGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGAL-LGPLLGGLLAESLG--- 151 (352)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHH-HHHHHHHHHHHHhh---
Confidence 66554432 23345677788999999999999999999999999999999999988888885 57778888888754
Q ss_pred CccccCCcccHHHHHHHHHHHHHHHHHHHH
Q 008482 512 GNKCTGTHCFMLSFFIMGSATLCGSLAAFG 541 (564)
Q Consensus 512 ~~~C~G~~Cy~~af~i~~~l~v~a~vl~~~ 541 (564)
++..|.+.....+++.++..+
T Consensus 152 ---------~~~~~~~~~~~~~~~~~~~~~ 172 (352)
T cd06174 152 ---------WRWLFLILAILGLLLALLLLF 172 (352)
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHH
Confidence 578888877777666655443
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.3e-07 Score=97.60 Aligned_cols=336 Identities=16% Similarity=0.169 Sum_probs=189.7
Q ss_pred cCCCcchhhHHHHhhhhhc-cccccchhhhccccCCCCCCCccchhhhcccCcHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 008482 43 QHYDQTTLDTVSVFKDIGA-NTGTLSGVLYTYSTSDHSSHHPRQQRLTRLLGPWVVLLVGAIQCFAGYFLMWASVVGLIP 121 (564)
Q Consensus 43 lg~sq~~~~~i~~a~~vg~-~~g~~~G~l~d~~~~~~~~~~~~~~~~~~~~GP~~~~~iG~vl~~~Gy~~~~l~~~g~i~ 121 (564)
.+-.++|+..+--.+.+-. .+..+.|.+.||+| -|..+++|-+..+.--.++ ++-
T Consensus 101 ~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iG------------------y~ipm~~Gl~vmf~sTilF-----afg- 156 (464)
T KOG3764|consen 101 LDRENTQIGLLFASKALVQLLVNPFFGNLIDRIG------------------YKIPMVAGLFVMFLSTILF-----AFG- 156 (464)
T ss_pred ccccccchhHHHHHHHHHHHHhcccchhhHHHhc------------------cccHHHHHHHHHHHHHHHH-----HHc-
Confidence 4445556665533333333 34677888888765 8999999988887777663 332
Q ss_pred CCCHHHHHHHHHHHhhhhhhhhHHHHHHHhhhcCCC--CcceeeeehhhhhhhHHHHHHHHHhhcCCCchhHHHHHHHHH
Q 008482 122 RPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFPTY--SGTAVGIMKGFVGLSGAILIQVYQTFFNNKPTSYLLLLALLA 199 (564)
Q Consensus 122 ~~~~~~l~~~~~l~G~g~~~~~ta~l~t~~k~FP~~--RG~a~Gl~~a~~GLsa~i~s~i~~~~f~~~~~~~llfla~~p 199 (564)
.+|+.+.+.=.+.|.|+++.+|+.+.-.++-|||+ ||.|.|+..++.+||-.+- |
T Consensus 157 -~sy~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~er~~vmGialgfislG~lvg----------------------P 213 (464)
T KOG3764|consen 157 -NSYPMLFVARSLQGVGSAFADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVG----------------------P 213 (464)
T ss_pred -chhHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceec----------------------C
Confidence 36777778899999999999999999999999963 7999999999999986442 3
Q ss_pred HHHhhhhheeeeeccCCCCcccccchhHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHhhhhhhhhhccCC
Q 008482 200 SIDPLLLMWFVRICNTNEGNEKKHLNSFSLIALIVAAYLMVIIILEHIFALPFLVRVLTLILLLLLLASPLYVAIRVQGS 279 (564)
Q Consensus 200 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~p~~~~~~~~~~ 279 (564)
.+-++ +-+..+++ .. |.+. + ++ +++..++...+-++.+
T Consensus 214 pfGGi----lYe~~Gk~-----aP---FlVL----~------------------------~v--~Lld~~L~l~vi~p~~ 251 (464)
T KOG3764|consen 214 PFGGI----LYEFAGKS-----AP---FLVL----A------------------------IV--LLLDGALQLLVIEPTE 251 (464)
T ss_pred Ccccc----hHhhcCCc-----Cc---HHHH----H------------------------HH--HHHHHHHHHheeCccc
Confidence 33211 11222221 11 1110 0 00 1111111100011100
Q ss_pred CCCCCCcCccccCCCCCCCccchhhhccccCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCcHHHHhhcHHHHHHHHHH
Q 008482 280 DSDRTSETSFCEEDELTDDPHEMHAEKMHVRQDPVGYHRLPSEPDVGTDTNDATTSLWGGDLDLLQAICTLEFWILSFAM 359 (564)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~t~~Fwll~~~~ 359 (564)
. ||+ +. .++..+++.+++|+-|+...+.
T Consensus 252 ~-------------------------------~~~-------~~--------------~~~~~~~~Ll~dP~I~~~agai 279 (464)
T KOG3764|consen 252 M-------------------------------DPD-------ST--------------EQGTPMWSLLMDPYILLIAGAI 279 (464)
T ss_pred c-------------------------------Ccc-------cc--------------ccCccHHHHHhCchHhhhhcch
Confidence 0 000 00 0244678999999999876654
Q ss_pred Hhhhhchhhe-ecchhH-HHhhcCCCcc-chhHHHHHHHHHHHHhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHH
Q 008482 360 ACGMGSGLAT-VNNISQ-IGGSLGYSSF-ETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHL 436 (564)
Q Consensus 360 ~~~~g~gl~~-i~n~~~-i~~~~g~~~~-~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~R~~~l~~~~~l~~i~~l 436 (564)
... ..++.+ =.-++. +.+... +++ +....-=-.++...+|--+.|-+.||+.+ .| |.+.+...++. +..
T Consensus 280 ~~~-n~~lafLePtlslwm~e~m~-~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~----~~-wl~~~~gl~~~-G~~ 351 (464)
T KOG3764|consen 280 TFS-NSSLAFLEPTLSLWMLETMF-TPGWEVGLAFLPASLSYAIGTNLFGKLADKYPH----LR-WLLSLGGLATV-GVS 351 (464)
T ss_pred hhc-cchHHHhCcccHHHHHHhcc-CCCcceeeeecccccchhccCchHHHHHHhcCc----hh-HHHHHHHHHHH-HHH
Confidence 443 222222 111222 223333 111 11111112455667888899999999843 24 55544443332 222
Q ss_pred HHH---hcCcchHHHHH----HHHHhhhccccchhHHHHHHhh--ccCchhhhhhhHhhhhhhHHHhhhhhhhhhhhhcc
Q 008482 437 IIA---SGLPGALYAGS----ILVGVCYGSQWSLMPTIASEIF--GVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDRE 507 (564)
Q Consensus 437 l~~---~~~~~~l~~~~----~l~G~~~G~~~~~~P~ivse~F--G~k~fg~nyg~~~~a~~iG~~lf~~~l~g~iyD~~ 507 (564)
+.. .+....+++.- ..+|..+-.+..+++.++-..- |.+-||..|++...+..+|.. +||.+.|.++.+-
T Consensus 352 ~~~iP~~~~~~~L~vp~~~l~~~i~~~dasl~P~l~~lvd~rh~s~~~vYGsVyaIad~a~sla~a-~GP~~gg~iv~~i 430 (464)
T KOG3764|consen 352 SGPIPFATSIAQLWVPNFGLGFGIGLADASLIPTLGYLVDPRHVSGFNVYGSVYAIADAAFSLAYA-IGPTFGGSLVEAI 430 (464)
T ss_pred hchhHhhhhHHHHhhhhHHHHHHHHHHHHHHhhhhHHhcchhhccccceeeeHHHHHHHHHHHhhh-ccccccchheeeh
Confidence 211 11111243332 3334455556666666666554 223688999998888888874 6888899999886
Q ss_pred cCCCCccccCCcccHHHHHHHHHHHHHHHHHHH
Q 008482 508 ASGEGNKCTGTHCFMLSFFIMGSATLCGSLAAF 540 (564)
Q Consensus 508 ~~~~~~~C~G~~Cy~~af~i~~~l~v~a~vl~~ 540 (564)
| |.+.-.+....+.+-.-+..
T Consensus 431 G------------F~wl~~iig~~n~iyapvl~ 451 (464)
T KOG3764|consen 431 G------------FEWLMTIIGILNLIYAPVLL 451 (464)
T ss_pred h------------HHHHHHHHHHHHHHHHHHHH
Confidence 6 56666666666655443333
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.1e-07 Score=102.57 Aligned_cols=157 Identities=10% Similarity=0.002 Sum_probs=118.1
Q ss_pred chhheecchhHHHhhcCCCccchhHHHHHHHHHHHHhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHhc-Cc
Q 008482 365 SGLATVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIASG-LP 443 (564)
Q Consensus 365 ~gl~~i~n~~~i~~~~g~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~R~~~l~~~~~l~~i~~ll~~~~-~~ 443 (564)
+..++...+.+|.++.+.+..+....++++.+..+++++.+|+++||++|| ..+.....+.+++.++.... +.
T Consensus 31 ~~~~~~p~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr------~~l~~~~~~~~~~~~~~~~a~~~ 104 (413)
T PRK15403 31 TTDLIQPGIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRR------PVLITGALIFTLACAATLFTTSM 104 (413)
T ss_pred HHHhhccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCch------HHHHHHHHHHHHHHHHHHHcCCH
Confidence 455677778889999999988889999999999999999999999999643 34444555555555544332 33
Q ss_pred chHHHHHHHHHhhhccccchhHHHHHHhhccCchhhhhhhHhhhhhhHHHhhhhhhhhhhhhcccCCCCccccCCcccHH
Q 008482 444 GALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFML 523 (564)
Q Consensus 444 ~~l~~~~~l~G~~~G~~~~~~P~ivse~FG~k~fg~nyg~~~~a~~iG~~lf~~~l~g~iyD~~~~~~~~~C~G~~Cy~~ 523 (564)
..++++-++.|++.|........++.|.|..++-++..++...+..+|+. +++.+.+.+.|..+ ++.
T Consensus 105 ~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~lg~~l~~~~g------------w~~ 171 (413)
T PRK15403 105 TQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPI-IGPLSGAALMHFVH------------WKV 171 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcC------------HHH
Confidence 35666778888888766666778899999988888888888877777774 56666777776533 789
Q ss_pred HHHHHHHHHHHHHHHHH
Q 008482 524 SFFIMGSATLCGSLAAF 540 (564)
Q Consensus 524 af~i~~~l~v~a~vl~~ 540 (564)
.|++..++.+++.++.+
T Consensus 172 ~f~~~~~~~~i~~~~~~ 188 (413)
T PRK15403 172 LFAIIAVMGLIAFVGLL 188 (413)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99988887777765443
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.4e-07 Score=93.39 Aligned_cols=151 Identities=17% Similarity=0.214 Sum_probs=108.5
Q ss_pred cHHHHHHHHHHHhhhhchhheecchhHHHhh-cCCCccchhHHHHHHHHHHHHhhhhhhhhhhhhhhcccCchhHHHHHH
Q 008482 349 TLEFWILSFAMACGMGSGLATVNNISQIGGS-LGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVIT 427 (564)
Q Consensus 349 t~~Fwll~~~~~~~~g~gl~~i~n~~~i~~~-~g~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~R~~~l~~~ 427 (564)
.|.||+++++.++---+-.-+|.--.-..++ .|+++.++....|..-..++.--.+.|.++|+.++ ..|+....
T Consensus 263 ~ppfw~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~-----n~~wv~~a 337 (459)
T KOG4686|consen 263 YPPFWVLVIICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGF-----NLWWVASA 337 (459)
T ss_pred CccHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcc-----eehhHHHH
Confidence 4789999888777544444444322223344 59999888888888888888889999999999974 34666777
Q ss_pred HHHHHHHHHHHHhcCcchHHHHHHHHHhhhcc----ccchhHHHHHHhhccCchhhhhhhHhhhhhhHHHhhhhhhhhhh
Q 008482 428 LAAMSIGHLIIASGLPGALYAGSILVGVCYGS----QWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYI 503 (564)
Q Consensus 428 ~~l~~i~~ll~~~~~~~~l~~~~~l~G~~~G~----~~~~~P~ivse~FG~k~fg~nyg~~~~a~~iG~~lf~~~l~g~i 503 (564)
++....++..+.++. ..-|.+..+.|++|.- .|...|.+++| +..|+-||++..-..+|-- +.+.++|.+
T Consensus 338 ~~~tl~~H~~l~Ft~-lsPy~~m~~lGLsysllAcslWP~va~~vpE----~qLGTaygf~qsIqNLgla-~i~Iiag~i 411 (459)
T KOG4686|consen 338 CILTLLGHSGLFFTF-LSPYTSMTFLGLSYSLLACSLWPCVASLVPE----EQLGTAYGFIQSIQNLGLA-FIPIIAGFI 411 (459)
T ss_pred HHHHHHHhhhHHhhh-ccHHHHHHHHhhhHHHHHHHHhhhhhhhCCH----HHhcchHHHHHHHHhhhhh-HHhhhhhee
Confidence 777778876655432 2357778888998865 56666777765 4788999988866666553 455679999
Q ss_pred hhcccCC
Q 008482 504 YDREASG 510 (564)
Q Consensus 504 yD~~~~~ 510 (564)
-|..+++
T Consensus 412 ~d~~g~y 418 (459)
T KOG4686|consen 412 ADGDGSY 418 (459)
T ss_pred ecCCCch
Confidence 9998863
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=98.72 E-value=1e-07 Score=102.57 Aligned_cols=175 Identities=14% Similarity=0.125 Sum_probs=110.1
Q ss_pred HHhhcHHHHHHHHHHHhhhhchhheecchhHHHhh-cCCCccchhHHHHHHHHHHHHhhhhhhhhhhhhhhcccCchhHH
Q 008482 345 QAICTLEFWILSFAMACGMGSGLATVNNISQIGGS-LGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLF 423 (564)
Q Consensus 345 ~~l~t~~Fwll~~~~~~~~g~gl~~i~n~~~i~~~-~g~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~R~~~ 423 (564)
+..++++||.+++.+++...+-..+...++...++ .|+++.+.+..+++..+...++++.+|+++||+++|+ .
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~-----~- 78 (420)
T PRK09528 5 YYLKNPNYWIFSLFFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKK-----H- 78 (420)
T ss_pred hhhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchH-----H-
Confidence 45678999999988888876555666666666665 8999999999999999999999999999999997532 2
Q ss_pred HHHHHHHHHHHH--H-HHHhc-C-cch----HHHHHHHHHhhhccccchhHHHHHHhhccCchhhhhhhHhhhhhhHHHh
Q 008482 424 MVITLAAMSIGH--L-IIASG-L-PGA----LYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYI 494 (564)
Q Consensus 424 l~~~~~l~~i~~--l-l~~~~-~-~~~----l~~~~~l~G~~~G~~~~~~P~ivse~FG~k~fg~nyg~~~~a~~iG~~l 494 (564)
+.+...+.+++. + ..... . ... .+++.++.|.++.......+..+.+ + .++.|..||.......+|..
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~g~~~g~~~~~~~~g~~- 155 (420)
T PRK09528 79 LLWIISGLLVLFGPFFIYVFAPLLQYNILLGAIVGGIYLGFGFLAGAGAIEAYIER-V-SRRSGFEYGRARMWGSLGWA- 155 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhhhhHHHH-H-HhhccccchhhHHhhhHHHH-
Confidence 222222211111 1 11110 0 001 1223344455555544455555433 3 35567777776665566653
Q ss_pred hhhhhhhhhhhcccCCCCccccCCcccHHHHHHHHHHHHHHHHHHHH
Q 008482 495 FSVRVVGYIYDREASGEGNKCTGTHCFMLSFFIMGSATLCGSLAAFG 541 (564)
Q Consensus 495 f~~~l~g~iyD~~~~~~~~~C~G~~Cy~~af~i~~~l~v~a~vl~~~ 541 (564)
+++.+.|.++|.+ ++..|++..+++++..++.+.
T Consensus 156 i~~~~~g~l~~~~-------------~~~~f~~~~~~~~~~~~~~~~ 189 (420)
T PRK09528 156 LCAFIAGILFNIN-------------PQINFWLGSGSALILLVLLFF 189 (420)
T ss_pred HHHHHHHHHHhcC-------------chHhHHHHHHHHHHHHHHHhc
Confidence 4556788888752 477888877777666544433
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=98.71 E-value=5.4e-11 Score=128.68 Aligned_cols=105 Identities=15% Similarity=0.120 Sum_probs=79.6
Q ss_pred hhhHHHHhhhhhcccc-ccchhhhccccCCCCCCCccchhhhcccCcHHHHHHHHHHHHHHHHHHHHHHhcCCCC-CCHH
Q 008482 49 TLDTVSVFKDIGANTG-TLSGVLYTYSTSDHSSHHPRQQRLTRLLGPWVVLLVGAIQCFAGYFLMWASVVGLIPR-PPVP 126 (564)
Q Consensus 49 ~~~~i~~a~~vg~~~g-~~~G~l~d~~~~~~~~~~~~~~~~~~~~GP~~~~~iG~vl~~~Gy~~~~l~~~g~i~~-~~~~ 126 (564)
+...+..+..+|..+| +..|.+.||+| +|+++.++.++..+|.++. +..+. .+++
T Consensus 47 ~~~~~~~~~~~g~~~G~~~~g~~~d~~G------------------Rk~~~~~~~~~~~i~~~~~-----~~~~~~~~~~ 103 (451)
T PF00083_consen 47 LSSLLTSSFFIGAIVGALIFGFLADRYG------------------RKPALIISALLMIIGSILI-----AFAPSYNNFW 103 (451)
T ss_pred HHHHHHHHHHhhhccccccccccccccc------------------ccccccccccccccccccc-----cccccccccc
Confidence 3456677778888774 56777778764 9999999999999999983 33321 1456
Q ss_pred HHHHHHHHHhhhhhhhhHHHHHHHhhhcC-CCCcceeeeehhhhhhhHHHH
Q 008482 127 VMCLFMLFAAHGMTFFNTADVVTSVRNFP-TYSGTAVGIMKGFVGLSGAIL 176 (564)
Q Consensus 127 ~l~~~~~l~G~g~~~~~ta~l~t~~k~FP-~~RG~a~Gl~~a~~GLsa~i~ 176 (564)
.++..=++.|+|.|..++.........=| ++||....+...++.+|..+-
T Consensus 104 ~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~ 154 (451)
T PF00083_consen 104 MLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLA 154 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 66667788899999888887777777776 579999999998888876543
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.1e-07 Score=99.80 Aligned_cols=150 Identities=18% Similarity=0.147 Sum_probs=111.8
Q ss_pred chhHHHhhcCCCccchhHHHHHHHHHHHHhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHh-cCcchHHHHH
Q 008482 372 NISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIAS-GLPGALYAGS 450 (564)
Q Consensus 372 n~~~i~~~~g~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~R~~~l~~~~~l~~i~~ll~~~-~~~~~l~~~~ 450 (564)
....+.++.|.++.+.+...++..+...++.++.|+++||+++| ..+....++..++.++... .....+++..
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (398)
T TIGR00895 39 AAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRK------RVLLWSILLFSVFTLLCALATNVTQLLILR 112 (398)
T ss_pred hHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhH------HHHHHHHHHHHHHHHHHHHccchHHHHHHH
Confidence 45566677899888888889999999999999999999999643 3344445555555544432 2333466677
Q ss_pred HHHHhhhccccchhHHHHHHhhccCchhhhhhhHhhhhhhHHHhhhhhhhhhhhhcccCCCCccccCCcccHHHHHHHHH
Q 008482 451 ILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSFFIMGS 530 (564)
Q Consensus 451 ~l~G~~~G~~~~~~P~ivse~FG~k~fg~nyg~~~~a~~iG~~lf~~~l~g~iyD~~~~~~~~~C~G~~Cy~~af~i~~~ 530 (564)
++.|++.|..+...+++++|.+..++-++..|+...+..+|.. +++.+.|.+.|..+ ++..|.+.++
T Consensus 113 ~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~-~~~~~~~~l~~~~g------------~~~~~~~~~~ 179 (398)
T TIGR00895 113 FLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAA-VGGFLAGWLIPVFG------------WRSLFYVGGI 179 (398)
T ss_pred HHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHH-HHHHHHHHHhhccc------------ceeehhhhhh
Confidence 8999999999999999999999989999999998888888775 56667888887654 5777777755
Q ss_pred HHHHHHHHHH
Q 008482 531 ATLCGSLAAF 540 (564)
Q Consensus 531 l~v~a~vl~~ 540 (564)
++++..++..
T Consensus 180 ~~~~~~~~~~ 189 (398)
T TIGR00895 180 APLLLLLLLM 189 (398)
T ss_pred HHHHHHHHHH
Confidence 5555443333
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.8e-07 Score=100.08 Aligned_cols=172 Identities=8% Similarity=-0.022 Sum_probs=122.1
Q ss_pred HHHHHHHHHHHhhhh----chhheecchhHHHhhcCCCccchhHHHHHHHHHHHHhhhhhhhhhhhhhhcccCchhHHHH
Q 008482 350 LEFWILSFAMACGMG----SGLATVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMV 425 (564)
Q Consensus 350 ~~Fwll~~~~~~~~g----~gl~~i~n~~~i~~~~g~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~R~~~l~ 425 (564)
+++|++.+.+.+... ..-++...+.++.++.+.++.+....++.+.+...++.+..|.++||+++| ..+.
T Consensus 9 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r------~~l~ 82 (406)
T PRK15402 9 RQALLFPLCLVLFEFATYIANDMIQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRR------PVML 82 (406)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCh------HHHH
Confidence 677777666666654 344555667788889999988888899999999999999999999999643 3344
Q ss_pred HHHHHHHHHHHHHH-hcCcchHHHHHHHHHhhhccccchhHHHHHHhhccCchhhhhhhHhhhhhhHHHhhhhhhhhhhh
Q 008482 426 ITLAAMSIGHLIIA-SGLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIY 504 (564)
Q Consensus 426 ~~~~l~~i~~ll~~-~~~~~~l~~~~~l~G~~~G~~~~~~P~ivse~FG~k~fg~nyg~~~~a~~iG~~lf~~~l~g~iy 504 (564)
....+.+++.++.. ..+...+++...+.|++.|......+..+.|.|..++-++..++......++. .+++.+.+.+.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~i~~~l~ 161 (406)
T PRK15402 83 AGVAFFILTCLAILLAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAP-LLGPLVGAALI 161 (406)
T ss_pred HHHHHHHHHHHHHHHHccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 44445555544433 23333566777888999998888888999999987766666666655455554 34565677777
Q ss_pred hcccCCCCccccCCcccHHHHHHHHHHHHHHHHHHH
Q 008482 505 DREASGEGNKCTGTHCFMLSFFIMGSATLCGSLAAF 540 (564)
Q Consensus 505 D~~~~~~~~~C~G~~Cy~~af~i~~~l~v~a~vl~~ 540 (564)
|..+ ++.+|.+.+++++++.+...
T Consensus 162 ~~~~------------w~~~~~~~~~~~~~~~~~~~ 185 (406)
T PRK15402 162 HVLP------------WRGMFVLFAALAALSFFGLW 185 (406)
T ss_pred HccC------------ccHHHHHHHHHHHHHHHHHH
Confidence 7543 68899888877777664443
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=7.1e-08 Score=101.50 Aligned_cols=157 Identities=11% Similarity=0.147 Sum_probs=122.5
Q ss_pred hhheecchhHHHhhcCCCccchhHHHHHHHHHHHHhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHh-cCcc
Q 008482 366 GLATVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIAS-GLPG 444 (564)
Q Consensus 366 gl~~i~n~~~i~~~~g~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~R~~~l~~~~~l~~i~~ll~~~-~~~~ 444 (564)
..++...+..+.+++|.++.+.+...++..+...++++.+|.++||+++ ...+.....+.+++.++... ....
T Consensus 7 ~~~~~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~------~~~~~~~~~~~~i~~~~~~~~~~~~ 80 (377)
T PRK11102 7 IDMYLPALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGR------KPVILGGTLVFALAAVACALAQTID 80 (377)
T ss_pred HHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCC------hHHHHHHHHHHHHHHHHHHHHccHH
Confidence 3455677888999999998889999999999999999999999999953 33455555555555554432 2333
Q ss_pred hHHHHHHHHHhhhccccchhHHHHHHhhccCchhhhhhhHhhhhhhHHHhhhhhhhhhhhhcccCCCCccccCCcccHHH
Q 008482 445 ALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLS 524 (564)
Q Consensus 445 ~l~~~~~l~G~~~G~~~~~~P~ivse~FG~k~fg~nyg~~~~a~~iG~~lf~~~l~g~iyD~~~~~~~~~C~G~~Cy~~a 524 (564)
.+++...+.|++.|.......+++.|.+..++.++..++...+..+|.. +++.+.+.+.|..+ ++..
T Consensus 81 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~l~~~~~------------~~~~ 147 (377)
T PRK11102 81 QLIYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPL-LAPIIGGWLLVWFS------------WHAI 147 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcC------------hHHH
Confidence 5667778889999999999999999999999999999998888888775 57777888888654 6888
Q ss_pred HHHHHHHHHHHHHHHHH
Q 008482 525 FFIMGSATLCGSLAAFG 541 (564)
Q Consensus 525 f~i~~~l~v~a~vl~~~ 541 (564)
|.+...++++..++..+
T Consensus 148 ~~~~~~~~~~~~~~~~~ 164 (377)
T PRK11102 148 FWVLALAAILAAALVFF 164 (377)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88888777776555443
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=3e-07 Score=97.70 Aligned_cols=175 Identities=11% Similarity=0.040 Sum_probs=122.4
Q ss_pred cHHHHHHHHHHHhhhhchhheecchhHHHhhcCCCccch-----hHHHHHHHHHHHHhhhhhhhhhhhhhhcccCchhHH
Q 008482 349 TLEFWILSFAMACGMGSGLATVNNISQIGGSLGYSSFET-----SSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLF 423 (564)
Q Consensus 349 t~~Fwll~~~~~~~~g~gl~~i~n~~~i~~~~g~~~~~a-----a~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~R~~~ 423 (564)
+++++.+++..++......++..-+..+.+++|.+..+. +...++..+...++.+.+|+++||+++| ..
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r------~~ 86 (408)
T PRK09874 13 KRNLTVAWLGCFLTGAAFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRK------IM 86 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcH------HH
Confidence 346777777776664444455566788888888875543 5677888899999999999999999643 33
Q ss_pred HHHHHHHHHHHHHHHHh-cCcchHHHHHHHHHhhhccccchhHHHHHHhhccCchhhhhhhHhhhhhhHHHhhhhhhhhh
Q 008482 424 MVITLAAMSIGHLIIAS-GLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGY 502 (564)
Q Consensus 424 l~~~~~l~~i~~ll~~~-~~~~~l~~~~~l~G~~~G~~~~~~P~ivse~FG~k~fg~nyg~~~~a~~iG~~lf~~~l~g~ 502 (564)
+.....+.+++.++... .....+++...+.|++.+ ........+.|.+..++.++..++...+..+|.. .++.+.|.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~ 164 (408)
T PRK09874 87 LLRSALGMGIVMVLMGLAQNIWQFLILRALLGLLGG-FVPNANALIATQVPRNKSGWALGTLSTGGVSGAL-LGPLAGGL 164 (408)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 44445555555544432 233346667778888754 4566677888999888888888888777777774 56677888
Q ss_pred hhhcccCCCCccccCCcccHHHHHHHHHHHHHHHHHHHHHH
Q 008482 503 IYDREASGEGNKCTGTHCFMLSFFIMGSATLCGSLAAFGLF 543 (564)
Q Consensus 503 iyD~~~~~~~~~C~G~~Cy~~af~i~~~l~v~a~vl~~~l~ 543 (564)
+.|..+ ++.+|.+..++.+++.++..+..
T Consensus 165 l~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~ 193 (408)
T PRK09874 165 LADSYG------------LRPVFFITASVLFLCFLVTLFCI 193 (408)
T ss_pred HHHHhC------------HHHHHHHHHHHHHHHHHHHHHHh
Confidence 887654 68899988887777665554443
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=98.67 E-value=7.4e-06 Score=91.98 Aligned_cols=103 Identities=13% Similarity=0.170 Sum_probs=68.9
Q ss_pred HHHHhhcCCCcchhhHHHHhhhhhcccc-ccchhhhccccCCCCCCCccchhhhcccCcHHHHHHHHHHHHHHHHHHHHH
Q 008482 37 PALKTTQHYDQTTLDTVSVFKDIGANTG-TLSGVLYTYSTSDHSSHHPRQQRLTRLLGPWVVLLVGAIQCFAGYFLMWAS 115 (564)
Q Consensus 37 ~~L~~~lg~sq~~~~~i~~a~~vg~~~g-~~~G~l~d~~~~~~~~~~~~~~~~~~~~GP~~~~~iG~vl~~~Gy~~~~l~ 115 (564)
+++-..+|=+ .+...++++..++...+ .+.|.+.|.+ |+|..+++|.++..+|.++
T Consensus 68 ~~I~~diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDlf------------------GRr~~~i~g~~l~vvG~Iv---- 124 (599)
T PF06609_consen 68 PYINADIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDLF------------------GRRYFFIIGSLLGVVGSIV---- 124 (599)
T ss_pred HHHHHhcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHHh------------------cchHHHHHHHHHHHhHHHH----
Confidence 3455556554 33446677777776553 4567676765 5999999999999999998
Q ss_pred HhcCCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHhhhcCC-CCcceeeeeh
Q 008482 116 VVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFPT-YSGTAVGIMK 166 (564)
Q Consensus 116 ~~g~i~~~~~~~l~~~~~l~G~g~~~~~ta~l~t~~k~FP~-~RG~a~Gl~~ 166 (564)
.+.. .+...++.=..+.|.|.+......+. ...--|. +|+...++..
T Consensus 125 -~atA--~~~~~~iag~~l~GvgaG~~~~~~~~-isEl~p~k~R~~~~~~~~ 172 (599)
T PF06609_consen 125 -CATA--QNMNTFIAGMVLYGVGAGVQELAALA-ISELVPNKWRGLGLAIAS 172 (599)
T ss_pred -hhcC--CcHHHHHHHHHHHHHhhHHHHHHHHH-HHHhcccchhhhHhHHHH
Confidence 4444 35666777777778887777666555 3445574 5876655444
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=98.66 E-value=6.1e-08 Score=100.81 Aligned_cols=150 Identities=19% Similarity=0.237 Sum_probs=115.4
Q ss_pred hhHHHhhcCCCccchhHHHHHHHHHHHHhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHH-hcCcchHHHHHH
Q 008482 373 ISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIA-SGLPGALYAGSI 451 (564)
Q Consensus 373 ~~~i~~~~g~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~R~~~l~~~~~l~~i~~ll~~-~~~~~~l~~~~~ 451 (564)
.+.+.++.|.++.+.+...++..+.+.++.+.+|+++||+++|+. +.....+.+++.++.. ......+++.-+
T Consensus 17 ~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (399)
T TIGR00893 17 APMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKT------LAVFIVIWGVFTGLQAFAGAYVSLYILRV 90 (399)
T ss_pred HHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCccee------eHHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 345667789998889999999999999999999999999975433 3344444444444433 223345777788
Q ss_pred HHHhhhccccchhHHHHHHhhccCchhhhhhhHhhhhhhHHHhhhhhhhhhhhhcccCCCCccccCCcccHHHHHHHHHH
Q 008482 452 LVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSFFIMGSA 531 (564)
Q Consensus 452 l~G~~~G~~~~~~P~ivse~FG~k~fg~nyg~~~~a~~iG~~lf~~~l~g~iyD~~~~~~~~~C~G~~Cy~~af~i~~~l 531 (564)
+.|++.|..+...+.+++|++..|+-++..|+......+|.. +++.+.+.+.|..+ ++..|.+.+++
T Consensus 91 l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~-~~~~~~~~l~~~~~------------~~~~~~~~~~~ 157 (399)
T TIGR00893 91 LLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGI-IGGPLVGWILIHFS------------WQWAFIIEGVL 157 (399)
T ss_pred HHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHH-HHHHHHHHHHHhCC------------chHHHHHHHHH
Confidence 999999999999999999999999999999999888888885 56667888887654 68899888777
Q ss_pred HHHHHHHHHH
Q 008482 532 TLCGSLAAFG 541 (564)
Q Consensus 532 ~v~a~vl~~~ 541 (564)
+++..++...
T Consensus 158 ~~~~~~~~~~ 167 (399)
T TIGR00893 158 GIIWGVLWLK 167 (399)
T ss_pred HHHHHHHhhh
Confidence 7666544443
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.5e-07 Score=98.41 Aligned_cols=150 Identities=11% Similarity=0.119 Sum_probs=117.9
Q ss_pred chhHHHhhcCCCccchhHHHHHHHHHHHHhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHh-cCcchHHHHH
Q 008482 372 NISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIAS-GLPGALYAGS 450 (564)
Q Consensus 372 n~~~i~~~~g~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~R~~~l~~~~~l~~i~~ll~~~-~~~~~l~~~~ 450 (564)
-++++.++.|.++.+.+..++.+.+...++.+.+|.+.||+++ ++.+.....+.+++.++... .+...+++.-
T Consensus 31 ~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~------r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r 104 (390)
T PRK03545 31 LLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVER------RKLLIGLFVLFIASHVLSALAWNFTVLLISR 104 (390)
T ss_pred chHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCh------HHHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 3678889999999999999999999999999999999999964 34455566666666555443 3333466666
Q ss_pred HHHHhhhccccchhHHHHHHhhccCchhhhhhhHhhhhhhHHHhhhhhhhhhhhhcccCCCCccccCCcccHHHHHHHHH
Q 008482 451 ILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSFFIMGS 530 (564)
Q Consensus 451 ~l~G~~~G~~~~~~P~ivse~FG~k~fg~nyg~~~~a~~iG~~lf~~~l~g~iyD~~~~~~~~~C~G~~Cy~~af~i~~~ 530 (564)
.+.|++.|..+.....++.|.+..++-++..|+...+..+|.. .++.+.+.+.+..+ ++.+|.+.++
T Consensus 105 ~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~-ig~~l~~~l~~~~g------------w~~~f~~~~~ 171 (390)
T PRK03545 105 IGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMV-LGLPLGRVIGQYLG------------WRTTFLAIGG 171 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHH-HHhhHHHHHHHHhc------------HHHHHHHHHH
Confidence 7889999888888899999999989999999999988888885 57777888777644 6889998887
Q ss_pred HHHHHHHHHH
Q 008482 531 ATLCGSLAAF 540 (564)
Q Consensus 531 l~v~a~vl~~ 540 (564)
++++..++..
T Consensus 172 ~~~l~~~~~~ 181 (390)
T PRK03545 172 GALITLLLLI 181 (390)
T ss_pred HHHHHHHHHH
Confidence 7766654443
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=4.7e-07 Score=96.69 Aligned_cols=171 Identities=11% Similarity=0.081 Sum_probs=125.1
Q ss_pred HHHHHHHHHHHhhhhchhheecchhHHHhhcCCCccchhHHHHHHHHHHHHhhhhhhhhhhhhhhcccCchhHHHHHHHH
Q 008482 350 LEFWILSFAMACGMGSGLATVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLA 429 (564)
Q Consensus 350 ~~Fwll~~~~~~~~g~gl~~i~n~~~i~~~~g~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~R~~~l~~~~~ 429 (564)
+-+|..++.+++..+...++-..+.++.++.+.++++.+...++..+...+|.+.+|+++||+++| ..+....+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r------~~~~~~~~ 80 (394)
T PRK03699 7 KLTWISFLSYALTGALVIVTGMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLK------RQLIFGFA 80 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH------HHHHHHHH
Confidence 467777777777666554555557888889999988889999999999999999999999999643 33455555
Q ss_pred HHHHHHHHHHhc-CcchHHHHHHHHHhhhccccchhHHHHHHhhccCchhhhhhhHhhhhhhHHHhhhhhhhhhhhhccc
Q 008482 430 AMSIGHLIIASG-LPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREA 508 (564)
Q Consensus 430 l~~i~~ll~~~~-~~~~l~~~~~l~G~~~G~~~~~~P~ivse~FG~k~fg~nyg~~~~a~~iG~~lf~~~l~g~iyD~~~ 508 (564)
+.+++.++.... ....+++.-.+.|++.|..++....++.|.|..|+-+...++...+..+|.. +++.+.+.+.+.+.
T Consensus 81 ~~~i~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~-~~~~~~~~l~~~~~ 159 (394)
T PRK03699 81 LMILAVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGM-IFPIIAAYLLARSI 159 (394)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHH-HHHHHHHHHHhccc
Confidence 555655544432 2334666778899999999999999999999888888887777666666664 34556777766544
Q ss_pred CCCCccccCCcccHHHHHHHHHHHHHHHHH
Q 008482 509 SGEGNKCTGTHCFMLSFFIMGSATLCGSLA 538 (564)
Q Consensus 509 ~~~~~~C~G~~Cy~~af~i~~~l~v~a~vl 538 (564)
+ ++..|.+..+++++..++
T Consensus 160 g-----------w~~~f~~~~~~~~~~~~~ 178 (394)
T PRK03699 160 E-----------WYWVYACIGLVYVAIFIL 178 (394)
T ss_pred c-----------HHHHHHHHHHHHHHHHHH
Confidence 4 688888877666555433
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.6e-07 Score=98.45 Aligned_cols=160 Identities=15% Similarity=0.108 Sum_probs=115.7
Q ss_pred hhchhheecchhHHHhhcCCCccchhHHHHHHHHHHHHhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHhc-
Q 008482 363 MGSGLATVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIASG- 441 (564)
Q Consensus 363 ~g~gl~~i~n~~~i~~~~g~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~R~~~l~~~~~l~~i~~ll~~~~- 441 (564)
..+.-++....+++.++.|.++.+.+...++..+...++.+.+|+++||+++|+ .+.....+..++.++....
T Consensus 19 ~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~------~~~~~~~~~~~~~~~~~~~~ 92 (401)
T PRK11043 19 FLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKP------VLLAGLSLFALGSLGMLWVE 92 (401)
T ss_pred HHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcH------HHHHHHHHHHHHHHHHHHhc
Confidence 333445566677788899999999999999999999999999999999996532 3444444555555444332
Q ss_pred CcchHHHHHHHHHhhhccccchhHHHHHHhhccCchhhhhhhHhhhhhhHHHhhhhhhhhhhhhcccCCCCccccCCccc
Q 008482 442 LPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCF 521 (564)
Q Consensus 442 ~~~~l~~~~~l~G~~~G~~~~~~P~ivse~FG~k~fg~nyg~~~~a~~iG~~lf~~~l~g~iyD~~~~~~~~~C~G~~Cy 521 (564)
....+++.-.+.|++.|........++.|.|..++-+..++.......++.. +++.+.|.+.|..+ +
T Consensus 93 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~i~~~l~~~~g------------~ 159 (401)
T PRK11043 93 SAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPA-LAPLLGAWLLNHFG------------W 159 (401)
T ss_pred CHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCC------------h
Confidence 2234555667888888888778888999999988888888877655556553 45667888888754 6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 008482 522 MLSFFIMGSATLCGSLAAFG 541 (564)
Q Consensus 522 ~~af~i~~~l~v~a~vl~~~ 541 (564)
+..|.+..++.++..++..+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~ 179 (401)
T PRK11043 160 QAIFATLFAITLLLILPTLR 179 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 88888887777666544443
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=6.3e-06 Score=90.45 Aligned_cols=147 Identities=11% Similarity=0.046 Sum_probs=78.4
Q ss_pred cHHHHhhcHHHHHHHHHHHhhhhchhheecchhHHHhhcCCCccchhHHHHHHHHHHHHhhhhhhhhhhhhhhcccCchh
Q 008482 342 DLLQAICTLEFWILSFAMACGMGSGLATVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARP 421 (564)
Q Consensus 342 t~~~~l~t~~Fwll~~~~~~~~g~gl~~i~n~~~i~~~~g~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~R~ 421 (564)
..++.++++.|+.+....++..............+.+-....+...+....+..+.+.+|=+++++++||++||+.
T Consensus 220 ~l~~~~~Nk~~~~l~~~~~~~~~~~~~~~~~~~y~~~y~~g~~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~---- 295 (460)
T PRK11462 220 DLRDIWQNDQWRIVGLLTIFNILAVCVRGGAMMYYVTWILGTPEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTI---- 295 (460)
T ss_pred HHHHHhCChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHH----
Confidence 3567788999887765544442222222122222223222122223455667788888999999999999975421
Q ss_pred HHHHHHHHHHHHHHHHHHhcC--cchHHHHHHHHHhhhccccchhHHHHHHh-------hccCchhhhhhhHh----hhh
Q 008482 422 LFMVITLAAMSIGHLIIASGL--PGALYAGSILVGVCYGSQWSLMPTIASEI-------FGVLQMGTIFNTIT----IAN 488 (564)
Q Consensus 422 ~~l~~~~~l~~i~~ll~~~~~--~~~l~~~~~l~G~~~G~~~~~~P~ivse~-------FG~k~fg~nyg~~~----~a~ 488 (564)
... ........+.++..... +..+++..++.|+..|....+..++++|. .|.|+=|..|+... ++.
T Consensus 296 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~ 374 (460)
T PRK11462 296 FWW-TNALLAVISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGL 374 (460)
T ss_pred HHH-HHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHH
Confidence 111 11111121222222111 11244455667777777666556666655 66788777776643 455
Q ss_pred hhHHH
Q 008482 489 PVGSY 493 (564)
Q Consensus 489 ~iG~~ 493 (564)
++|+.
T Consensus 375 alg~~ 379 (460)
T PRK11462 375 AFGGA 379 (460)
T ss_pred HHHHH
Confidence 55554
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=98.63 E-value=6.9e-07 Score=96.31 Aligned_cols=151 Identities=15% Similarity=0.128 Sum_probs=112.7
Q ss_pred HHhhcCCCccchhHHHHHHHHHHHHhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHh-cCcchHHHHHHHHH
Q 008482 376 IGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIAS-GLPGALYAGSILVG 454 (564)
Q Consensus 376 i~~~~g~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~R~~~l~~~~~l~~i~~ll~~~-~~~~~l~~~~~l~G 454 (564)
+.+++|.++.+.....+++.++.+++.+..|+++||+++ .+.+....++..++.++... .+...+++.-++.|
T Consensus 34 l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~------r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G 107 (412)
T TIGR02332 34 MGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGA------RRWIAGIMVLWGIASTATMFATGPESLYLLRILVG 107 (412)
T ss_pred hHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCh------HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 446789998888999999999999999999999999964 33455556666666555443 33445777788999
Q ss_pred hhhccccchhHHHHHHhhccCchhhhhhhHhhhhhhHHHhhhhhhhhhhhhcccCCCCccccCCcccHHHHHHHHHHHHH
Q 008482 455 VCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSFFIMGSATLC 534 (564)
Q Consensus 455 ~~~G~~~~~~P~ivse~FG~k~fg~nyg~~~~a~~iG~~lf~~~l~g~iyD~~~~~~~~~C~G~~Cy~~af~i~~~l~v~ 534 (564)
++.|+.+.....+++|+|..|+-|+..|+...+..+|.. +++.+.+.+.+.+. ..+..-.+.+|++.++..++
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~-~~~~~~~~l~~~~~------~~~~~gwr~~f~~~~~~~l~ 180 (412)
T TIGR02332 108 IAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMA-LGLILSGYILALDG------LMALKGWQWLFLLEGFPSVI 180 (412)
T ss_pred HHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCC------CCCccchhHHHHHHHHHHHH
Confidence 999999888888899999988999999999888888885 56767787775321 00011179999987766655
Q ss_pred HHHHH
Q 008482 535 GSLAA 539 (564)
Q Consensus 535 a~vl~ 539 (564)
..++.
T Consensus 181 ~~~~~ 185 (412)
T TIGR02332 181 LGVMT 185 (412)
T ss_pred HHHHH
Confidence 44333
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=3.3e-07 Score=97.71 Aligned_cols=147 Identities=16% Similarity=0.168 Sum_probs=109.7
Q ss_pred hHHHhhcCCCccchhHHHHHHHHHHHHhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHH-hcCcchHHHHHHH
Q 008482 374 SQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIA-SGLPGALYAGSIL 452 (564)
Q Consensus 374 ~~i~~~~g~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~R~~~l~~~~~l~~i~~ll~~-~~~~~~l~~~~~l 452 (564)
.++.++.|.++.+.+...+...+...++.+.+|+++||+++|+ .+....++..++.++.. ......+.+.-++
T Consensus 39 ~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 112 (406)
T PRK11551 39 PRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKR------ILIVSVALFGLFSLATAQAWDFPSLLVARLL 112 (406)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCch------hHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 4666788999888999999999999999999999999997543 34444444444443332 2333356667789
Q ss_pred HHhhhccccchhHHHHHHhhccCchhhhhhhHhhhhhhHHHhhhhhhhhhhhhcccCCCCccccCCcccHHHHHHHHHHH
Q 008482 453 VGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSFFIMGSAT 532 (564)
Q Consensus 453 ~G~~~G~~~~~~P~ivse~FG~k~fg~nyg~~~~a~~iG~~lf~~~l~g~iyD~~~~~~~~~C~G~~Cy~~af~i~~~l~ 532 (564)
.|++.|.......+++.|.|..|+-++..|+...+..+|.. +++.+.+.+.+..+ ++..|.+..++.
T Consensus 113 ~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~------------~~~~~~~~~~~~ 179 (406)
T PRK11551 113 TGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGA-LASVIGVLAAGDAA------------WRHIFYVGGVGP 179 (406)
T ss_pred HHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHccccC------------HHHHHHHHHHHH
Confidence 99999999999999999999999999999998888888875 56656666655433 688888776655
Q ss_pred HHHHHHH
Q 008482 533 LCGSLAA 539 (564)
Q Consensus 533 v~a~vl~ 539 (564)
++.+++.
T Consensus 180 ~~~~~~~ 186 (406)
T PRK11551 180 LLLVPLL 186 (406)
T ss_pred HHHHHHH
Confidence 5554333
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=4.6e-05 Score=84.33 Aligned_cols=134 Identities=14% Similarity=0.104 Sum_probs=85.7
Q ss_pred cccccccccH-HHHhhcCCCcchhhHHHHhhhhhccc-cccchhhhccccCCCCCCCccchhhhcccCcHHHHHHHHHHH
Q 008482 28 SLYTFSIYSP-ALKTTQHYDQTTLDTVSVFKDIGANT-GTLSGVLYTYSTSDHSSHHPRQQRLTRLLGPWVVLLVGAIQC 105 (564)
Q Consensus 28 ~~Y~fS~ys~-~L~~~lg~sq~~~~~i~~a~~vg~~~-g~~~G~l~d~~~~~~~~~~~~~~~~~~~~GP~~~~~iG~vl~ 105 (564)
+.|.+..+-+ -+.+++|+++.+...+........++ .+++|++.||+- |+|.++.+|.++.
T Consensus 24 s~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRil-----------------Grrr~iliG~il~ 86 (493)
T PRK15462 24 SFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVL-----------------GNRMAVMLGALLM 86 (493)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-----------------CcHHHHHHHHHHH
Confidence 4455544444 35677999999998776666666665 568888888861 4999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHhhhcCC---CCcceeeeehhhhhhhHHHHHHHHHh
Q 008482 106 FAGYFLMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFPT---YSGTAVGIMKGFVGLSGAILIQVYQT 182 (564)
Q Consensus 106 ~~Gy~~~~l~~~g~i~~~~~~~l~~~~~l~G~g~~~~~ta~l~t~~k~FP~---~RG~a~Gl~~a~~GLsa~i~s~i~~~ 182 (564)
.+|++++... +.. ....... ..+...|.+......-....+.||+ +|+.+.++.-....+++.+-..+...
T Consensus 87 ~lg~lll~~~--~~~--~~~~~l~--l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~ 160 (493)
T PRK15462 87 AIGHVVLGAS--EIH--PSFLYLS--LAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGY 160 (493)
T ss_pred HHHHHHHHHh--hcc--hhHHHHH--HHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHH
Confidence 9999865321 111 1122111 2222344444433333445788985 58888888888777777666655544
Q ss_pred hc
Q 008482 183 FF 184 (564)
Q Consensus 183 ~f 184 (564)
..
T Consensus 161 L~ 162 (493)
T PRK15462 161 AQ 162 (493)
T ss_pred HH
Confidence 43
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=98.62 E-value=3.7e-07 Score=99.02 Aligned_cols=153 Identities=18% Similarity=0.120 Sum_probs=109.7
Q ss_pred hhHHHhhcCCCccchhHHHHHHHHHHHHhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHhc-----CcchHH
Q 008482 373 ISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIASG-----LPGALY 447 (564)
Q Consensus 373 ~~~i~~~~g~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~R~~~l~~~~~l~~i~~ll~~~~-----~~~~l~ 447 (564)
..+..++.|.++.+.+...++..+...++.+.+|+++||+++|+ .+....++.+++.++.... ....++
T Consensus 49 ~~p~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 122 (438)
T TIGR00712 49 AMPYLVEQGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRV------FLPAGLILSAAVMLLMGFVPWATSSIAIMF 122 (438)
T ss_pred hhHHHHHcCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCce------ehHHHHHHHHHHHHHHhccccccchHHHHH
Confidence 33455567999888899999999999999999999999997543 2344444555554433211 111244
Q ss_pred HHHHHHHhhhccccchhHHHHHHhhccCchhhhhhhHhhhhhhHHHhhhhhhhhhhhhcccCCCCccccCCcccHHHHHH
Q 008482 448 AGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSFFI 527 (564)
Q Consensus 448 ~~~~l~G~~~G~~~~~~P~ivse~FG~k~fg~nyg~~~~a~~iG~~lf~~~l~g~iyD~~~~~~~~~C~G~~Cy~~af~i 527 (564)
+.-.+.|++.|..+......+.|+|..|+-|+..|+...+..+|..+ ++.+.+...+.+.+ ++.+|++
T Consensus 123 ~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~-~~~l~~~~~~~~~~-----------w~~~f~~ 190 (438)
T TIGR00712 123 VLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGI-PPLLVLLGMAWFND-----------WHAALYF 190 (438)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHH-HHHHHHHHHHHhhh-----------hHHHHHH
Confidence 55677899999999888899999999999999999988777777753 44455554444333 7899999
Q ss_pred HHHHHHHHHHHHHHHH
Q 008482 528 MGSATLCGSLAAFGLF 543 (564)
Q Consensus 528 ~~~l~v~a~vl~~~l~ 543 (564)
..+.+++..++.+++.
T Consensus 191 ~~~~~~i~~~~~~~~~ 206 (438)
T TIGR00712 191 PAICAIIVALFAFAMM 206 (438)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 8888877665554443
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=98.62 E-value=3e-07 Score=100.12 Aligned_cols=155 Identities=17% Similarity=0.176 Sum_probs=120.7
Q ss_pred eecchhHHHhhcCCCccchhHHHHHHHHHHHHhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHh-cCcchHH
Q 008482 369 TVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIAS-GLPGALY 447 (564)
Q Consensus 369 ~i~n~~~i~~~~g~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~R~~~l~~~~~l~~i~~ll~~~-~~~~~l~ 447 (564)
+...++.+.++.|.++.+.+...+.+.+.+.++.+.+|+++||+++ ...+.....+..++.++... .+...++
T Consensus 21 ~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~------r~~~~~~~~~~~~~~~~~~~~~~~~~l~ 94 (485)
T TIGR00711 21 VNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGT------RRLFLISTFAFTLGSLLCGVAPNLELMI 94 (485)
T ss_pred HHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCc------HHHHHHHHHHHHHHHHHHhCcCCHHHHH
Confidence 3345677788899988888999999999999999999999999964 33455555666666555443 2333567
Q ss_pred HHHHHHHhhhccccchhHHHHHHhhccCchhhhhhhHhhhhhhHHHhhhhhhhhhhhhcccCCCCccccCCcccHHHHHH
Q 008482 448 AGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSFFI 527 (564)
Q Consensus 448 ~~~~l~G~~~G~~~~~~P~ivse~FG~k~fg~nyg~~~~a~~iG~~lf~~~l~g~iyD~~~~~~~~~C~G~~Cy~~af~i 527 (564)
+.-.+.|++.|.......+++.|.+..|+-+...++...+..+|+. +++.+.|.+.|..+ ++..|.+
T Consensus 95 ~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~-~g~~~~~~l~~~~~------------w~~~f~~ 161 (485)
T TIGR00711 95 IFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPA-LGPTLGGWIIENYH------------WRWIFLI 161 (485)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhh-hhhccHhHhccCcC------------ceehhhh
Confidence 7778899999999999999999999999999999998888888885 57778888888644 5788888
Q ss_pred HHHHHHHHHHHHHHH
Q 008482 528 MGSATLCGSLAAFGL 542 (564)
Q Consensus 528 ~~~l~v~a~vl~~~l 542 (564)
...+++++.++..+.
T Consensus 162 ~~~~~~~~~~~~~~~ 176 (485)
T TIGR00711 162 NVPIGIIVVVVAFFI 176 (485)
T ss_pred hhHHHHHHHHHHHHH
Confidence 877777666555444
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.61 E-value=5.1e-07 Score=98.97 Aligned_cols=161 Identities=17% Similarity=0.172 Sum_probs=119.9
Q ss_pred HHHHHHHHHHHhhhhchhheecchhHHHhhcCCCccchhHHHHHHHHHHHHhhhhhhhhhhhhhhcccCchhHHHHHHHH
Q 008482 350 LEFWILSFAMACGMGSGLATVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLA 429 (564)
Q Consensus 350 ~~Fwll~~~~~~~~g~gl~~i~n~~~i~~~~g~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~R~~~l~~~~~ 429 (564)
..++.+++.+++......++..-..++.++.|.++.+.+..++...+...++.+..|+++||+++| ..+....+
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r------~~~~~~~~ 93 (496)
T PRK03893 20 KAFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRR------LAMVISIV 93 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH------HHHHHHHH
Confidence 366666666666544444444445677788999988889999999999999999999999999643 33445555
Q ss_pred HHHHHHHHHHh-cCcchHHHHHHHHHhhhccccchhHHHHHHhhccCchhhhhhhHhhhhhhHHHhhhhhhhhhhhhccc
Q 008482 430 AMSIGHLIIAS-GLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREA 508 (564)
Q Consensus 430 l~~i~~ll~~~-~~~~~l~~~~~l~G~~~G~~~~~~P~ivse~FG~k~fg~nyg~~~~a~~iG~~lf~~~l~g~iyD~~~ 508 (564)
+.+++.++... .....+++..++.|++.|+.+.....++.|.|-.|+-+.-.++...+..+|.. +++.+.+.+.+..+
T Consensus 94 ~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~-~~~~~~~~l~~~~~ 172 (496)
T PRK03893 94 LFSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAV-VAAQVYSLVVPVWG 172 (496)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhccCC
Confidence 55555554433 23335677788999999999999999999999988888888888888888885 57777888877543
Q ss_pred CCCCccccCCcccHHHHHHHH
Q 008482 509 SGEGNKCTGTHCFMLSFFIMG 529 (564)
Q Consensus 509 ~~~~~~C~G~~Cy~~af~i~~ 529 (564)
++..|.+..
T Consensus 173 ------------w~~~f~~~~ 181 (496)
T PRK03893 173 ------------WRALFFIGI 181 (496)
T ss_pred ------------HHHHHHHHH
Confidence 677777643
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=98.60 E-value=5.3e-07 Score=98.57 Aligned_cols=150 Identities=13% Similarity=0.081 Sum_probs=111.6
Q ss_pred chhHHHhhcCCCccchhHHHHHHHHHHHHhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHhc-CcchHHHHH
Q 008482 372 NISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIASG-LPGALYAGS 450 (564)
Q Consensus 372 n~~~i~~~~g~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~R~~~l~~~~~l~~i~~ll~~~~-~~~~l~~~~ 450 (564)
...++.++.|.+..+.+...+++.+...++.+++|+++||+++| ..+....++..++.++.... ....+++..
T Consensus 41 ~~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r------~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~ 114 (455)
T TIGR00892 41 FFKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCR------PVVIAGGLLASLGMILASFSSNVIELYLTA 114 (455)
T ss_pred hHHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCch------HHHHhhHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 46677788899988889999999999999999999999999643 33444455555555544332 222344433
Q ss_pred -HHHHhhhccccchhHHHHHHhhccCchhhhhhhHhhhhhhHHHhhhhhhhhhhhhcccCCCCccccCCcccHHHHHHHH
Q 008482 451 -ILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSFFIMG 529 (564)
Q Consensus 451 -~l~G~~~G~~~~~~P~ivse~FG~k~fg~nyg~~~~a~~iG~~lf~~~l~g~iyD~~~~~~~~~C~G~~Cy~~af~i~~ 529 (564)
++.|++.|..+.....++.++|. |+-++..|+...+..+|.. +++.+.|.+.|..+ ++.+|++.+
T Consensus 115 ~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~-~~~~l~~~l~~~~g------------wr~~f~~~~ 180 (455)
T TIGR00892 115 GFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLS-TLAPLNQYLFESFG------------WRGSFLILG 180 (455)
T ss_pred HHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHH-HHHHHHHHHHHHhC------------hHHHHHHHH
Confidence 67799988776667788899995 7789999999988888885 56668889988754 799999998
Q ss_pred HHHHHHHHHHHH
Q 008482 530 SATLCGSLAAFG 541 (564)
Q Consensus 530 ~l~v~a~vl~~~ 541 (564)
++++++.+..++
T Consensus 181 ~~~~~~~v~~~~ 192 (455)
T TIGR00892 181 GLLLHCCVCGAL 192 (455)
T ss_pred HHHHHHHHHHHH
Confidence 888776644433
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=3.3e-07 Score=97.37 Aligned_cols=156 Identities=13% Similarity=0.091 Sum_probs=117.1
Q ss_pred heecchhHHHhhcCCCccchhHHHHHHHHHHHHhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHh-cCcchH
Q 008482 368 ATVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIAS-GLPGAL 446 (564)
Q Consensus 368 ~~i~n~~~i~~~~g~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~R~~~l~~~~~l~~i~~ll~~~-~~~~~l 446 (564)
++..-++++.+++|.++.+.....+++.+...++.+..|+++||+++| ..+.....+..++.++... .....+
T Consensus 21 ~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r------~~l~~~~~~~~i~~~~~~~~~~~~~~ 94 (392)
T PRK10473 21 MYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRK------PVAIPGAALFIIASLLCSLAETSSLF 94 (392)
T ss_pred HHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCCh------HHHHHHHHHHHHHHHHHHHhCcHHHH
Confidence 455568888899999988888899999999999999999999999643 3344555555555554433 222345
Q ss_pred HHHHHHHHhhhccccchhHHHHHHhhccCchhhhhhhHhhhhhhHHHhhhhhhhhhhhhcccCCCCccccCCcccHHHHH
Q 008482 447 YAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSFF 526 (564)
Q Consensus 447 ~~~~~l~G~~~G~~~~~~P~ivse~FG~k~fg~nyg~~~~a~~iG~~lf~~~l~g~iyD~~~~~~~~~C~G~~Cy~~af~ 526 (564)
++.-.+.|++.|..+.....++.|.+..|+-++..++......+|+. +++.+.+.+.|..+ ++..|.
T Consensus 95 ~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~-~~~~i~~~l~~~~g------------~~~~~~ 161 (392)
T PRK10473 95 LAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPV-LAPVLGHLIMLKFP------------WQSLFY 161 (392)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCcC------------hHHHHH
Confidence 66667889999998999999999999999999988888776667664 56666777776543 788898
Q ss_pred HHHHHHHHHHHHHHHH
Q 008482 527 IMGSATLCGSLAAFGL 542 (564)
Q Consensus 527 i~~~l~v~a~vl~~~l 542 (564)
+..+++++..++..+.
T Consensus 162 ~~~~~~~i~~~~~~~~ 177 (392)
T PRK10473 162 TMAAMGILVLLLSLFI 177 (392)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8887777766555443
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=2.9e-07 Score=98.55 Aligned_cols=166 Identities=13% Similarity=0.063 Sum_probs=124.1
Q ss_pred cHHHHHHHHHHHhhhhchhheecchhHHHhhcCCCccchhHHHHHHHHHHHHhhhhhhhhhhhhhhcccCchhHHHHHHH
Q 008482 349 TLEFWILSFAMACGMGSGLATVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITL 428 (564)
Q Consensus 349 t~~Fwll~~~~~~~~g~gl~~i~n~~~i~~~~g~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~R~~~l~~~~ 428 (564)
+++||.+++..++......++...+.++.++.+.++...+..++.+.+...+..+.+|+++||++||+ .+....
T Consensus 2 ~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~------vl~~~~ 75 (393)
T PRK11195 2 SKGFYAIMAAQFFSALADNALLFAAIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGR------VMFIAN 75 (393)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCch------hhHHHH
Confidence 56899999998887665555666677788888888777888999999999999999999999996543 344444
Q ss_pred HHHHHHHHHHHhcCcchHHHHHHHHHhhhccccchhHHHHHHhhccCchhhhhhhHhhhhhhHHHhhhhhhhhhhhhccc
Q 008482 429 AAMSIGHLIIASGLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREA 508 (564)
Q Consensus 429 ~l~~i~~ll~~~~~~~~l~~~~~l~G~~~G~~~~~~P~ivse~FG~k~fg~nyg~~~~a~~iG~~lf~~~l~g~iyD~~~ 508 (564)
.+..++.++...... .++.-++.|++.|......-++++|++..|+.++..|++.....+|.. +++.+.|.++|..
T Consensus 76 ~~~~~~~~~~~~~~~--~~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~-~Gp~lgG~l~~~~- 151 (393)
T PRK11195 76 GIKLLGCLLMLFGIH--PLLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAIL-LGTVLGGALADPH- 151 (393)
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH-
Confidence 444444333222111 245557889999999999999999999999999999999887777774 6888899999852
Q ss_pred CCCCccccCCcccHHHHHHHHHHHHHHH
Q 008482 509 SGEGNKCTGTHCFMLSFFIMGSATLCGS 536 (564)
Q Consensus 509 ~~~~~~C~G~~Cy~~af~i~~~l~v~a~ 536 (564)
+..+|.+...+.+++.
T Consensus 152 ------------~~~~~~i~~~~~~~~~ 167 (393)
T PRK11195 152 ------------AEAALAVCALIYLLAA 167 (393)
T ss_pred ------------HHHHHHHHHHHHHHHH
Confidence 4666666655544443
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=98.57 E-value=7.5e-07 Score=94.98 Aligned_cols=170 Identities=14% Similarity=0.141 Sum_probs=111.0
Q ss_pred cHHHHHHHHHHHhhhhchhheecchhHHHh-hcCCCccchhHHHHHHHHHHHHhhhhhhhhhhhhhhcccCchhHHHHHH
Q 008482 349 TLEFWILSFAMACGMGSGLATVNNISQIGG-SLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVIT 427 (564)
Q Consensus 349 t~~Fwll~~~~~~~~g~gl~~i~n~~~i~~-~~g~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~R~~~l~~~ 427 (564)
||+||.+....++....-..+...++...+ +.|+++.+.+..+++.++...++++.+|+++||++||+. +...
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~------~~~~ 74 (396)
T TIGR00882 1 NTNFWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKH------LLWI 74 (396)
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHH------HHHH
Confidence 589999987777776655555556666665 479999899999999999999999999999999975432 2222
Q ss_pred HHHHHHH---HHHHHhcC------cchHHHHHHHHHhhhccccchhHHHHHHhhccCchhhhhhhHhhhhhhHHHhhhhh
Q 008482 428 LAAMSIG---HLIIASGL------PGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVR 498 (564)
Q Consensus 428 ~~l~~i~---~ll~~~~~------~~~l~~~~~l~G~~~G~~~~~~P~ivse~FG~k~fg~nyg~~~~a~~iG~~lf~~~ 498 (564)
....+++ .+++.... ...+.+..++.|++++.........+.|. .|+.+.+||.......+|.. +++.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~g~~-~g~~ 151 (396)
T TIGR00882 75 ISGLLVLFAPFFIYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKV--SRNSNFEYGKARMFGCVGWA-LCAS 151 (396)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHh--hhhcccccchhhhhcccHHH-HHHH
Confidence 2222211 11111111 11133445677888888877777777664 24445566666555555553 4555
Q ss_pred hhhhhhhcccCCCCccccCCcccHHHHHHHHHHHHHHHHHHH
Q 008482 499 VVGYIYDREASGEGNKCTGTHCFMLSFFIMGSATLCGSLAAF 540 (564)
Q Consensus 499 l~g~iyD~~~~~~~~~C~G~~Cy~~af~i~~~l~v~a~vl~~ 540 (564)
+.|.++|. + ++..|.+.+.+.++..++.+
T Consensus 152 ~~g~l~~~--~-----------~~~~f~~~~~~~~~~~~~~~ 180 (396)
T TIGR00882 152 IAGILFSI--D-----------PQIVFWLGSGFALILMLLLM 180 (396)
T ss_pred HHhhhhcc--C-----------chHHHHHHHHHHHHHHHHHH
Confidence 67877764 2 57889888877777664443
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.55 E-value=4.6e-06 Score=88.80 Aligned_cols=182 Identities=16% Similarity=0.113 Sum_probs=132.4
Q ss_pred CcHHHHhhcHHHHHHHHHHHhhhhchhheecchhHHHh-hcCCCccchhHHHHHHHHHHHHhhhhhhhhhhhhhhcccCc
Q 008482 341 LDLLQAICTLEFWILSFAMACGMGSGLATVNNISQIGG-SLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWA 419 (564)
Q Consensus 341 ~t~~~~l~t~~Fwll~~~~~~~~g~gl~~i~n~~~i~~-~~g~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~ 419 (564)
.|++|..+..+.-+..++.++-.=.--.++.-.+..+. ++|.++.+.-.+--..++..+.|-++.|++.||++.|
T Consensus 243 ~t~k~i~~~~~i~~FLiA~~~~~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k---- 318 (438)
T COG2270 243 STFKEIRGRKNLVLFLIARFFYIDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSK---- 318 (438)
T ss_pred HHHHHHhcccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc----
Confidence 35677766666555555554442222233333444455 6799887777777788888999999999999999854
Q ss_pred hhHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHhhhccccchhHHHHHHhhccCchhhhhhhHhhhhhhHHHhhhhhh
Q 008482 420 RPLFMVITLAAMSIGHLIIASGLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRV 499 (564)
Q Consensus 420 R~~~l~~~~~l~~i~~ll~~~~~~~~l~~~~~l~G~~~G~~~~~~P~ivse~FG~k~fg~nyg~~~~a~~iG~~lf~~~l 499 (564)
+.++....++..++...+....+..+++..+++|+..|+..+.--+..++..-.++-++-||+-.+..=.+++ +++.+
T Consensus 319 -~vl~~~lvi~~~~~~~~~~~~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~-~gp~l 396 (438)
T COG2270 319 -PVLMIGLVILSIAALYLIFLEGELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASF-LGPFL 396 (438)
T ss_pred -eeehHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHH-HHHHH
Confidence 3334444444444443333344556888999999999999999999999999999999999999987777775 68888
Q ss_pred hhhhhhcccCCCCccccCCcccHHHHHHHHHHHHHHHHHH
Q 008482 500 VGYIYDREASGEGNKCTGTHCFMLSFFIMGSATLCGSLAA 539 (564)
Q Consensus 500 ~g~iyD~~~~~~~~~C~G~~Cy~~af~i~~~l~v~a~vl~ 539 (564)
.+.+=|.+++ .+..+.....+.++++++-
T Consensus 397 v~v~t~iTg~-----------~r~g~~~i~vll~iGl~~L 425 (438)
T COG2270 397 VAVITQITGS-----------SRAGVLSIIVLLLIGLLLL 425 (438)
T ss_pred HHHHHHHhcc-----------hhhHHHHHHHHHHhhHhhE
Confidence 9999999887 5888887777777776443
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=98.55 E-value=5.6e-07 Score=96.41 Aligned_cols=152 Identities=14% Similarity=0.068 Sum_probs=107.2
Q ss_pred HHHHHHHHHHHhhhhchhheecchhHHHhhcCCCccchhHHHHHHHHHHHHhhhhhhhhhhhhhhcccCchhHHHHHHHH
Q 008482 350 LEFWILSFAMACGMGSGLATVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLA 429 (564)
Q Consensus 350 ~~Fwll~~~~~~~~g~gl~~i~n~~~i~~~~g~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~R~~~l~~~~~ 429 (564)
...|.+...+.+..+.+ +..+.++++.++.|.++.+.+..++.+.+...++.+.+|.+.||+++ ...+.....
T Consensus 14 ~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~------k~~l~~~~~ 86 (402)
T TIGR00897 14 NLLWGYIGVVVFMTGDG-LEQGWLSPFLKALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGP------LKTMMIGLL 86 (402)
T ss_pred hhhHHHHHHHHHHHhhh-hHHHhHHHHHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCc------HHHHHHHHH
Confidence 34444444444444444 34456778889999999999999999999999999999999999964 334444555
Q ss_pred HHHHHHHHH---Hh--cCcchHHHHHHHHHhhhccccchhHHHHHHhhccCchhhhhhhHhhhhhhHHHhhhhhhhhhhh
Q 008482 430 AMSIGHLII---AS--GLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIY 504 (564)
Q Consensus 430 l~~i~~ll~---~~--~~~~~l~~~~~l~G~~~G~~~~~~P~ivse~FG~k~fg~nyg~~~~a~~iG~~lf~~~l~g~iy 504 (564)
+.+++.++. .. .....+++...+.|++++.........+.+.+..|+-|+..|+...+..+|..++++.+.+.+.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~ 166 (402)
T TIGR00897 87 LWCVGHAAFIVFGLGHANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAI 166 (402)
T ss_pred HHHHHHHHHHHHhccCccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 545444322 12 1222355566777888877766666778889889999999999888877775446776778888
Q ss_pred hccc
Q 008482 505 DREA 508 (564)
Q Consensus 505 D~~~ 508 (564)
|..+
T Consensus 167 ~~~g 170 (402)
T TIGR00897 167 PAFG 170 (402)
T ss_pred cccc
Confidence 7654
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=98.55 E-value=8.6e-06 Score=87.66 Aligned_cols=185 Identities=17% Similarity=0.155 Sum_probs=115.9
Q ss_pred HHHHhhcHHHHHHHHHHHhhhhchhheecchhH-HHhhcCCCc----cchhHHHHHHHHHHHHhhhhhhhhhhhhhhccc
Q 008482 343 LLQAICTLEFWILSFAMACGMGSGLATVNNISQ-IGGSLGYSS----FETSSLISLWSIWNFLGRFGAGYVSDYFLHVKE 417 (564)
Q Consensus 343 ~~~~l~t~~Fwll~~~~~~~~g~gl~~i~n~~~-i~~~~g~~~----~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~ 417 (564)
..+.+|+++||.+.+ +.++..+...+..+.-+ ..++..-++ +.-+...|+--+..+..=.++.++-+|++.|
T Consensus 213 ~~~l~k~~~fw~~~l-~v~g~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k-- 289 (412)
T PF01306_consen 213 VLSLFKMRNFWFFVL-FVIGVAAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAK-- 289 (412)
T ss_dssp HHHHTTSHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH--
T ss_pred HHHHhcchhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChH--
Confidence 457899999998644 44444444444333322 333332222 2234455555666666666666666666533
Q ss_pred CchhHHHHHHHHHHHHHHHHHHh-cCcchHHHHHHHHHhhhccccchhHHHHHHhhccCchhhhhhhHh-hhhhhHHHhh
Q 008482 418 WARPLFMVITLAAMSIGHLIIAS-GLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTIT-IANPVGSYIF 495 (564)
Q Consensus 418 ~~R~~~l~~~~~l~~i~~ll~~~-~~~~~l~~~~~l~G~~~G~~~~~~P~ivse~FG~k~fg~nyg~~~-~a~~iG~~lf 495 (564)
..+.+...++++=....+. +.+..+.+.=.+=|+.++....-.==.+++.|..|-.++.|.+.+ ++..+|..++
T Consensus 290 ----~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~ 365 (412)
T PF01306_consen 290 ----NLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIIL 365 (412)
T ss_dssp ----HHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHH
T ss_pred ----hHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHH
Confidence 2344555555554444332 333345555577777777666555567889999888889998864 7888888877
Q ss_pred hhhhhhhhhhcccCCCCccccCCcccHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008482 496 SVRVVGYIYDREASGEGNKCTGTHCFMLSFFIMGSATLCGSLAAFGLFLRTK 547 (564)
Q Consensus 496 ~~~l~g~iyD~~~~~~~~~C~G~~Cy~~af~i~~~l~v~a~vl~~~l~~r~~ 547 (564)
++ ++|.+||+-| |+.+|.+++++.++.++++.+...+.|
T Consensus 366 s~-~~G~lyd~~G------------~~~tylimg~iv~~~~li~~f~l~~~~ 404 (412)
T PF01306_consen 366 SP-LAGYLYDRIG------------FQHTYLIMGLIVLPFTLISAFTLKKDK 404 (412)
T ss_dssp HH-HHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHS--SS
T ss_pred hh-hHHhhHhhcC------------cHHHHHHHHHHHHHHHHHheeeecCCC
Confidence 66 7999999987 789999998887777777776654443
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=98.54 E-value=7.6e-07 Score=95.37 Aligned_cols=146 Identities=17% Similarity=0.208 Sum_probs=104.0
Q ss_pred chhHHHhhcCCC--------ccchhHHHHHHHHHHHHhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHH-hcC
Q 008482 372 NISQIGGSLGYS--------SFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIA-SGL 442 (564)
Q Consensus 372 n~~~i~~~~g~~--------~~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~R~~~l~~~~~l~~i~~ll~~-~~~ 442 (564)
....+..+.+.+ ..+.+...+++.+...++.+.+|+++||++| ...+.+..++..++.++.. ...
T Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~gr------r~~~~~~~~~~~~~~~~~~~~~~ 123 (481)
T TIGR00879 50 ALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGR------KKSLLIIALLFVIGAILMGLAAF 123 (481)
T ss_pred hhhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhh------HHHHHHHHHHHHHHHHHHHHhcc
Confidence 344455555554 6778899999999999999999999999964 3344555555555554432 222
Q ss_pred -cc--hHHHHHHHHHhhhccccchhHHHHHHhhccCchhhhhhhHhhhhhhHHHhhhhhhh---hhhhhcccCCCCcccc
Q 008482 443 -PG--ALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVV---GYIYDREASGEGNKCT 516 (564)
Q Consensus 443 -~~--~l~~~~~l~G~~~G~~~~~~P~ivse~FG~k~fg~nyg~~~~a~~iG~~lf~~~l~---g~iyD~~~~~~~~~C~ 516 (564)
.. .+++.-.+.|++.|..+.....+++|.+..|+-+...++...+..+|.. +++.+. +...+. .+
T Consensus 124 ~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~-~~~~~~~~~~~~~~~-~~------- 194 (481)
T TIGR00879 124 ALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGIL-VAYGFGSGKVSLNNT-LG------- 194 (481)
T ss_pred ccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHH-HHHHHHHHhhcCCCC-cc-------
Confidence 22 4677788999999999999999999999999999999988887788875 455444 222222 22
Q ss_pred CCcccHHHHHHHHHHHHHHH
Q 008482 517 GTHCFMLSFFIMGSATLCGS 536 (564)
Q Consensus 517 G~~Cy~~af~i~~~l~v~a~ 536 (564)
++..|.+.....++..
T Consensus 195 ----w~~~f~~~~~~~~~~~ 210 (481)
T TIGR00879 195 ----WRIPLGLQLIPAGLLF 210 (481)
T ss_pred ----HHHHHHHHHHHHHHHH
Confidence 7889988665555544
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.1e-06 Score=95.76 Aligned_cols=177 Identities=16% Similarity=0.141 Sum_probs=114.1
Q ss_pred hhcHHHHHHHHHHHhhhhchhhee---cc-hhHHHhhcCCCccchhHHHHHHHHHHHHhhhhhhhhhhhhhhcccCchhH
Q 008482 347 ICTLEFWILSFAMACGMGSGLATV---NN-ISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPL 422 (564)
Q Consensus 347 l~t~~Fwll~~~~~~~~g~gl~~i---~n-~~~i~~~~g~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~R~~ 422 (564)
+|+.+ |.++...++....-.+.. .. ++.+.++ |.++.+.+..++...+..+++.+.+|+++||+++| +
T Consensus 23 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k------~ 94 (452)
T PRK11273 23 YRRLR-WQIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPR------V 94 (452)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCc------h
Confidence 34433 566555555433222221 12 2333344 99988899999999999999999999999999654 3
Q ss_pred HHHHHHHHHHHHHHHHHhc-----CcchHHHHHHHHHhhhccccchhHHHHHHhhccCchhhhhhhHhhhhhhHHHhhhh
Q 008482 423 FMVITLAAMSIGHLIIASG-----LPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSV 497 (564)
Q Consensus 423 ~l~~~~~l~~i~~ll~~~~-----~~~~l~~~~~l~G~~~G~~~~~~P~ivse~FG~k~fg~nyg~~~~a~~iG~~lf~~ 497 (564)
++....++.+++.++.... ....+++.-.+.|++.|..+.....++.|+|..|+-|+..|+...+..+|..+.++
T Consensus 95 ~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~ 174 (452)
T PRK11273 95 FLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPL 174 (452)
T ss_pred hHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHH
Confidence 4555555555555544321 11234555678899998888777788999998888999999887777776543444
Q ss_pred hhhhhhhhcccCCCCccccCCcccHHHHHHHHHHHHHHHHHHHHHH
Q 008482 498 RVVGYIYDREASGEGNKCTGTHCFMLSFFIMGSATLCGSLAAFGLF 543 (564)
Q Consensus 498 ~l~g~iyD~~~~~~~~~C~G~~Cy~~af~i~~~l~v~a~vl~~~l~ 543 (564)
.+...+... .+ ++.+|++.++++++..++.++..
T Consensus 175 l~~~~~~~~-~g-----------w~~~f~i~~~~~~~~~~l~~~~~ 208 (452)
T PRK11273 175 LFLLGMAWF-ND-----------WHAALYMPAFAAILVALFAFAMM 208 (452)
T ss_pred HHHHHHHHh-cc-----------HHHHHHHHHHHHHHHHHHHHHHc
Confidence 322222222 22 68899888777766554554443
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=98.53 E-value=5.1e-07 Score=93.74 Aligned_cols=151 Identities=19% Similarity=0.146 Sum_probs=112.2
Q ss_pred chhHHHhhcCCCccchhHHHHHHHHHHHHhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHh-cCcchHHHHH
Q 008482 372 NISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIAS-GLPGALYAGS 450 (564)
Q Consensus 372 n~~~i~~~~g~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~R~~~l~~~~~l~~i~~ll~~~-~~~~~l~~~~ 450 (564)
-.+++.+++|.++.+.+...++..+...++++.+|.++||+++|+ .+.....+.+++.++... .....++++-
T Consensus 25 ~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (377)
T TIGR00890 25 LAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRA------VAMLGGILYGLGFTFYAIADSLAALYLTY 98 (377)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccc------hhHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666788999989999999999999999999999999997543 344455555555554432 2333466666
Q ss_pred HHHHhhhccccchhHHHHHHhhccCchhhhhhhHhhhhhhHHHhhhhhhhhhhhhcccCCCCccccCCcccHHHHHHHHH
Q 008482 451 ILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSFFIMGS 530 (564)
Q Consensus 451 ~l~G~~~G~~~~~~P~ivse~FG~k~fg~nyg~~~~a~~iG~~lf~~~l~g~iyD~~~~~~~~~C~G~~Cy~~af~i~~~ 530 (564)
.+.|++.|..+......+.|+|. |+-++..++...+..+|+.+.+ ++.+.+.|..+ ++..|++.++
T Consensus 99 ~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~------------~~~~f~~~~~ 164 (377)
T TIGR00890 99 GLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILS-PLITSVINLEG------------VPAAFIYMGI 164 (377)
T ss_pred HHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHH-HHHHHHHhccc------------HHHHHHHHHH
Confidence 78899999888777788889885 7788889998888888876444 35666666543 7899998888
Q ss_pred HHHHHHHHHHHH
Q 008482 531 ATLCGSLAAFGL 542 (564)
Q Consensus 531 l~v~a~vl~~~l 542 (564)
++++..++.++.
T Consensus 165 ~~~~~~~~~~~~ 176 (377)
T TIGR00890 165 IFLLVIVLGAFL 176 (377)
T ss_pred HHHHHHHHHHHh
Confidence 877766555443
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=98.53 E-value=2.2e-07 Score=96.59 Aligned_cols=150 Identities=22% Similarity=0.195 Sum_probs=109.8
Q ss_pred hhHHHhhcCCCccchhHHHHHHHHHHHHhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHh-cCcchHHHHHH
Q 008482 373 ISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIAS-GLPGALYAGSI 451 (564)
Q Consensus 373 ~~~i~~~~g~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~R~~~l~~~~~l~~i~~ll~~~-~~~~~l~~~~~ 451 (564)
...+.++.|.++.+.+...++..+...++.+..|+++||+++| +.+....++.+++.++... .....+++.-.
T Consensus 18 ~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (379)
T TIGR00881 18 MPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPR------VFLPIGLILCAIVNLFFGFSTSLWVMAALWA 91 (379)
T ss_pred hHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCe------ehhHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 4456677899988899999999999999999999999999654 3445555556665555432 23335666778
Q ss_pred HHHhhhccccchhHHHHHHhhccCchhhhhhhHhhhhhhHHHhhhh-hhhhhhhhcccCCCCccccCCcccHHHHHHHHH
Q 008482 452 LVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSV-RVVGYIYDREASGEGNKCTGTHCFMLSFFIMGS 530 (564)
Q Consensus 452 l~G~~~G~~~~~~P~ivse~FG~k~fg~nyg~~~~a~~iG~~lf~~-~l~g~iyD~~~~~~~~~C~G~~Cy~~af~i~~~ 530 (564)
+.|++.|.......++++|.+..|+-++..++...+..+|..+ ++ .+.+.+.+..+ ++..|.+.++
T Consensus 92 ~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~------------~~~~~~~~~~ 158 (379)
T TIGR00881 92 LNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGL-LPPLVLFGIAELYS------------WHWVFIVPGI 158 (379)
T ss_pred HHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHH-HHHHHHHHHHhcCC------------chhHHHHHHH
Confidence 8899999999999999999999988899888888777777753 44 23444444322 5778887776
Q ss_pred HHHHHHHHHHH
Q 008482 531 ATLCGSLAAFG 541 (564)
Q Consensus 531 l~v~a~vl~~~ 541 (564)
++++..++.++
T Consensus 159 ~~~~~~~~~~~ 169 (379)
T TIGR00881 159 IAIIVSLICFL 169 (379)
T ss_pred HHHHHHHHHhe
Confidence 66665544443
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=98.52 E-value=8.3e-07 Score=92.74 Aligned_cols=136 Identities=17% Similarity=0.167 Sum_probs=102.5
Q ss_pred HHHHHHHHHHhhhhchhheecchhH-HHhhcCCCccchhHHHHHHHHHHHHhhhhhhhhhhhhhhcccCchhHHHHHHHH
Q 008482 351 EFWILSFAMACGMGSGLATVNNISQ-IGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLA 429 (564)
Q Consensus 351 ~Fwll~~~~~~~~g~gl~~i~n~~~-i~~~~g~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~R~~~l~~~~~ 429 (564)
.||..++.+++......++..-..+ +.++.|.++.+.+...++..+...++.+.+|+++||+++| ..+.+..+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r------~~~~~~~~ 75 (366)
T TIGR00886 2 NLFFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPR------YTTTLSLL 75 (366)
T ss_pred chHHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCch------HHHHHHHH
Confidence 6899999988877777666666664 6788999998999999999999999999999999999643 34555666
Q ss_pred HHHHHHHHHHh-c-CcchHHHHHHHHHhhhccccchhHHHHHHhhccCchhhhhhhHh----hhhhhHHH
Q 008482 430 AMSIGHLIIAS-G-LPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTIT----IANPVGSY 493 (564)
Q Consensus 430 l~~i~~ll~~~-~-~~~~l~~~~~l~G~~~G~~~~~~P~ivse~FG~k~fg~nyg~~~----~a~~iG~~ 493 (564)
+..++.++... . ....+++..++.|++.+ .+.....+++|.+..|+-++..++.. ++..+|+.
T Consensus 76 ~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~ 144 (366)
T TIGR00886 76 LLAIPCLWAGLAVQSYSVLLLLRLFIGIAGG-SFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQF 144 (366)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhch-hhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHH
Confidence 66666655443 2 33346667788898844 55667788999999888888888766 45555554
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=4.4e-06 Score=91.98 Aligned_cols=176 Identities=13% Similarity=0.111 Sum_probs=107.8
Q ss_pred HHHHHHHHHHhhhhchhheecchhHHHhhcCCCccchhHHHHHHHHHHHHhhhhhhhhhhhhhhcccCchhHHHHHHHHH
Q 008482 351 EFWILSFAMACGMGSGLATVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAA 430 (564)
Q Consensus 351 ~Fwll~~~~~~~~g~gl~~i~n~~~i~~~~g~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~R~~~l~~~~~l 430 (564)
.++..|+.+++.......+..-+..+.+++|.+..+.+...+...+...+|.+++|+++||+++| +.+....++
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r------~~~~~~~~~ 110 (476)
T PLN00028 37 AFHLSWISFFTCFVSTFAAAPLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPR------YGSAFLLML 110 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCh------HHHHHHHHH
Confidence 34444444444433333333335567778999888877888888888999999999999999643 334444455
Q ss_pred HHHHHHHHHh-cCcchHHHHHHHHHhhhccccchhHHHHHHhhccCchhhhhhhHh----hhhhhHHHhhhhhhhhhhhh
Q 008482 431 MSIGHLIIAS-GLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTIT----IANPVGSYIFSVRVVGYIYD 505 (564)
Q Consensus 431 ~~i~~ll~~~-~~~~~l~~~~~l~G~~~G~~~~~~P~ivse~FG~k~fg~nyg~~~----~a~~iG~~lf~~~l~g~iyD 505 (564)
.+++.++... .....+++.-.+.|++.|... .....++|+|-.|+-|...|+.. ++..+++.+. +.+...+.+
T Consensus 111 ~~~~~~~~~~~~s~~~l~~~r~l~G~~~~~~~-~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~-~~i~~~~~~ 188 (476)
T PLN00028 111 TAPAVFCMSLVSSATGFIAVRFFIGFSLATFV-SCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLM-PLVFPLIKD 188 (476)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhH-HHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHh
Confidence 5555544432 233345556677888877643 34557899998888888888775 4455554432 222322222
Q ss_pred cccCCCCccccCCcccHHHHHHHHHHHHHHHHHHHH
Q 008482 506 REASGEGNKCTGTHCFMLSFFIMGSATLCGSLAAFG 541 (564)
Q Consensus 506 ~~~~~~~~~C~G~~Cy~~af~i~~~l~v~a~vl~~~ 541 (564)
.. |.+..=++.+|++.++++++..++..+
T Consensus 189 ~~-------~~~~~gWr~~f~i~g~l~l~~~l~~~~ 217 (476)
T PLN00028 189 AG-------APSFTAWRIAFFVPGLLHIIMGILVLT 217 (476)
T ss_pred cC-------CcchhhhHHHHHHHHHHHHHHHHHHHH
Confidence 20 000012799999888877766545443
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=1e-06 Score=94.61 Aligned_cols=171 Identities=13% Similarity=0.079 Sum_probs=120.0
Q ss_pred cHHHHHHHHHHHhhhhchhheecchhHH-HhhcCCCccchhHHHHHHHHHHHHhhhhhhhhhhhhhhcccCchhHHHHHH
Q 008482 349 TLEFWILSFAMACGMGSGLATVNNISQI-GGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVIT 427 (564)
Q Consensus 349 t~~Fwll~~~~~~~~g~gl~~i~n~~~i-~~~~g~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~R~~~l~~~ 427 (564)
-++ |.+++.-++......++.+-++.. .+++|.++...+...++..+...+.++++|.++||+++ ...+...
T Consensus 10 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~------k~~l~~~ 82 (400)
T PRK11646 10 LGK-YFLLIDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGA------KPMIVTG 82 (400)
T ss_pred ccH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCc------hHHHHHH
Confidence 345 444444444444444444444443 46789998888899999999999999999999999954 3445556
Q ss_pred HHHHHHHHHHHHh-cCcchHHHHHHHHHhhhccccchhHHHHHHhhccCchhhhhhhHhhhhhhHHHhhhhhhhhhhhhc
Q 008482 428 LAAMSIGHLIIAS-GLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDR 506 (564)
Q Consensus 428 ~~l~~i~~ll~~~-~~~~~l~~~~~l~G~~~G~~~~~~P~ivse~FG~k~fg~nyg~~~~a~~iG~~lf~~~l~g~iyD~ 506 (564)
..+.++++++... +....+++..++.|++.|.......+++.|.+..++.++.+|+......+|.. +++.+.|.+.+.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~-ig~~l~g~l~~~ 161 (400)
T PRK11646 83 MLMRAAGFATMAIAHEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAV-IGALLGSWLLQY 161 (400)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHh
Confidence 6666666555432 33345667778889988877777788899999999999999998877777774 567778888732
Q ss_pred ccCCCCccccCCcccHHHHHHHHHHHHHHHHHHH
Q 008482 507 EASGEGNKCTGTHCFMLSFFIMGSATLCGSLAAF 540 (564)
Q Consensus 507 ~~~~~~~~C~G~~Cy~~af~i~~~l~v~a~vl~~ 540 (564)
+ ++..|.+.+..+.+..++..
T Consensus 162 --g-----------~~~~f~~~~~~~~~~~i~~~ 182 (400)
T PRK11646 162 --D-----------FRLVCATGAVLFVLAAAFNA 182 (400)
T ss_pred --h-----------HHHHHHHHHHHHHHHHHHHH
Confidence 2 68888887776666554433
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=5.9e-07 Score=96.49 Aligned_cols=176 Identities=11% Similarity=0.040 Sum_probs=121.3
Q ss_pred HHHhhcHHHHHHHHHHHhhhhchhheecchhHHHhhcCCCccchhHHHHHHHHHHHHhhhhhhhhhhhhhhcccCchhHH
Q 008482 344 LQAICTLEFWILSFAMACGMGSGLATVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLF 423 (564)
Q Consensus 344 ~~~l~t~~Fwll~~~~~~~~g~gl~~i~n~~~i~~~~g~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~R~~~ 423 (564)
+...++++|+.+++..++......+...-++.+.++.+.++.+.+...+...+...++.+..|+++||+++|+-
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~------ 84 (417)
T PRK10489 11 SLLKTHPAFRAVFIARFISIFGLGLLGVAVPVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKL------ 84 (417)
T ss_pred HHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceE------
Confidence 44557889998887765554433333334555667788888888999999999999999999999999976543
Q ss_pred HHHHHHHHHHHHHHH-----Hhc-CcchHHHHHHHHHhhhccccchhHHHHHHhhccCchhhhhhhHhhhhhhHHHhhhh
Q 008482 424 MVITLAAMSIGHLII-----ASG-LPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSV 497 (564)
Q Consensus 424 l~~~~~l~~i~~ll~-----~~~-~~~~l~~~~~l~G~~~G~~~~~~P~ivse~FG~k~fg~nyg~~~~a~~iG~~lf~~ 497 (564)
+.....+.+++.++. ... ....+++..++.|++.|........++.|.+..++.++..++...+..+|.. +++
T Consensus 85 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~g~ 163 (417)
T PRK10489 85 ILLARGTCGLGFIGLALNAFLPEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSV-ISP 163 (417)
T ss_pred EEehHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHH-hHH
Confidence 222222222222211 111 1223555667788888877777778889999888888888888777777774 577
Q ss_pred hhhhhhhhcccCCCCccccCCcccHHHHHHHHHHHHHHHHH
Q 008482 498 RVVGYIYDREASGEGNKCTGTHCFMLSFFIMGSATLCGSLA 538 (564)
Q Consensus 498 ~l~g~iyD~~~~~~~~~C~G~~Cy~~af~i~~~l~v~a~vl 538 (564)
.+.|.++|..+ ++..|.+...+.+++.++
T Consensus 164 ~l~g~l~~~~~------------~~~~~~~~~~~~~~~~~~ 192 (417)
T PRK10489 164 ALGGLLIAAGG------------VAWNYGLAAAGTFITLLP 192 (417)
T ss_pred HHHHHHHHHHh------------hHHHHHHHHHHHHHHHHH
Confidence 78888888644 578888777666655543
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=98.51 E-value=4.4e-05 Score=84.17 Aligned_cols=187 Identities=14% Similarity=0.045 Sum_probs=113.5
Q ss_pred HHHHHHHHHHHhhhhchhheecchhH-HHhhc-CCCcc------chhHHHHHHHHHHHHhhhhhhhhhhhhhhcccC-ch
Q 008482 350 LEFWILSFAMACGMGSGLATVNNISQ-IGGSL-GYSSF------ETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEW-AR 420 (564)
Q Consensus 350 ~~Fwll~~~~~~~~g~gl~~i~n~~~-i~~~~-g~~~~------~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~-~R 420 (564)
+.+|.+.++.++.+.+-..+...... +.++. +.++. ++.-.-+...+.|++--.+++++.+++.|+.+. +|
T Consensus 258 ~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~~g~~k~ 337 (477)
T TIGR01301 258 RPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRGWGAGKR 337 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchh
Confidence 48999999999998776655444444 44443 22211 111112233333333334677777777776652 33
Q ss_pred hHHHHHHHHHHHHHHHHHHhc--C---c---------------chHHHHHHHHHhhhccccchhHHHHHHhhc--cCchh
Q 008482 421 PLFMVITLAAMSIGHLIIASG--L---P---------------GALYAGSILVGVCYGSQWSLMPTIASEIFG--VLQMG 478 (564)
Q Consensus 421 ~~~l~~~~~l~~i~~ll~~~~--~---~---------------~~l~~~~~l~G~~~G~~~~~~P~ivse~FG--~k~fg 478 (564)
.|.+...+...++....+... . + ..+.+...++|+++....++-=+++++.=- .++.|
T Consensus 338 ~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~~~~~~~G 417 (477)
T TIGR01301 338 LWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAITYSIPFALASIRSSNLGAGQG 417 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHccccCCCCc
Confidence 444443333333332222211 0 1 335667788999999999999999998876 46789
Q ss_pred hhhhhHhhhhhhHHHhhhhhhhhhhhhcccCCCCccccCCcccHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008482 479 TIFNTITIANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSFFIMGSATLCGSLAAFGLFLRTK 547 (564)
Q Consensus 479 ~nyg~~~~a~~iG~~lf~~~l~g~iyD~~~~~~~~~C~G~~Cy~~af~i~~~l~v~a~vl~~~l~~r~~ 547 (564)
..-|++..+..+.-++-+ ...|.+.+..++. -..++.+.++..+++.++++++.-|.+
T Consensus 418 ~~mgilN~~I~lpQii~s-l~~g~~~~~~g~~----------~~~~~~~~gv~~~~aa~~~~~~~~~~~ 475 (477)
T TIGR01301 418 LSMGVLNLAIVIPQIIVS-LGSGPWDQLFGGG----------NLPAFVVGAVAAFVSGLLALILLPRPR 475 (477)
T ss_pred chhhHHHHHHHHHHHHHH-HHHHHHHHHcCCC----------CeeHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 988988877666654433 3566666665542 477888888888888888877655443
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.5e-06 Score=96.09 Aligned_cols=155 Identities=14% Similarity=0.025 Sum_probs=117.4
Q ss_pred eecchhHHHhhcCCCccchhHHHHHHHHHHHHhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHh-cCcchHH
Q 008482 369 TVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIAS-GLPGALY 447 (564)
Q Consensus 369 ~i~n~~~i~~~~g~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~R~~~l~~~~~l~~i~~ll~~~-~~~~~l~ 447 (564)
+..-+++|.++++.+..+..+.++.+.+..+.+.+.+|+++||++ |.+.+.....+..++.++... .+...++
T Consensus 25 v~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~G------rk~~l~~~~~~~~~~~~~~~~a~~~~~li 98 (495)
T PRK14995 25 LHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIG------FKRLLMLGGTLFGLASLAAAFSPTASWLI 98 (495)
T ss_pred HHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhc------cHHHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 333467888899998888899999999999999999999999995 444455666666666555443 3334566
Q ss_pred HHHHHHHhhhccccchhHHHHHHhh-ccCchhhhhhhHhhhhhhHHHhhhhhhhhhhhhcccCCCCccccCCcccHHHHH
Q 008482 448 AGSILVGVCYGSQWSLMPTIASEIF-GVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSFF 526 (564)
Q Consensus 448 ~~~~l~G~~~G~~~~~~P~ivse~F-G~k~fg~nyg~~~~a~~iG~~lf~~~l~g~iyD~~~~~~~~~C~G~~Cy~~af~ 526 (564)
++-.+.|++.|......-.++.+.| ..|+-++..|+......+|+. +++.+.|.+.|..+ ++..|+
T Consensus 99 ~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~-~gp~lgg~l~~~~g------------wr~~f~ 165 (495)
T PRK14995 99 ATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAA-FGPLVGGILLEHFY------------WGSVFL 165 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhccCC------------hHHHHH
Confidence 6778899999887665556677777 568888889998888888874 67878899988754 689999
Q ss_pred HHHHHHHHHHHHHHHH
Q 008482 527 IMGSATLCGSLAAFGL 542 (564)
Q Consensus 527 i~~~l~v~a~vl~~~l 542 (564)
+...++++.+++..+.
T Consensus 166 i~~~~~~~~~~l~~~~ 181 (495)
T PRK14995 166 INVPIVLVVMGLTARY 181 (495)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 8887777766555443
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=2.6e-06 Score=94.30 Aligned_cols=167 Identities=14% Similarity=0.184 Sum_probs=120.0
Q ss_pred HHHHHHHHHHHhhhhchhheecchhHHH-hhcCCCccchhHHHHHHHHHHHHhhhhhhhhhhh-hhhcccCchhHHHHHH
Q 008482 350 LEFWILSFAMACGMGSGLATVNNISQIG-GSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDY-FLHVKEWARPLFMVIT 427 (564)
Q Consensus 350 ~~Fwll~~~~~~~~g~gl~~i~n~~~i~-~~~g~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~-l~~~~~~~R~~~l~~~ 427 (564)
+.+|+++..-++--.+-.++...+.... +++|.+.+++...++.+.......-++.|+++|| +++ ...+...
T Consensus 14 ~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~------r~~~~~g 87 (489)
T PRK10207 14 RPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGT------KRTIVLG 87 (489)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccch------HHHHHHH
Confidence 4577776666665555545555555554 4689998888889999998999999999999999 854 3445666
Q ss_pred HHHHHHHHHHHHhc-C-cchHHHHHHHHHhhhccccchhHHHHHHhhccCc--hhhhhhhHhhhhhhHHHhhhhhhhhhh
Q 008482 428 LAAMSIGHLIIASG-L-PGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQ--MGTIFNTITIANPVGSYIFSVRVVGYI 503 (564)
Q Consensus 428 ~~l~~i~~ll~~~~-~-~~~l~~~~~l~G~~~G~~~~~~P~ivse~FG~k~--fg~nyg~~~~a~~iG~~lf~~~l~g~i 503 (564)
.++..++.++.... . +..++++-++.|++.|...+..+++++|.|..++ .+.-|++.+.+..+|+. +++.+.|.+
T Consensus 88 ~~~~~~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~-~g~~l~g~l 166 (489)
T PRK10207 88 AIVLAIGYFMTGMSLLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSL-ISLSLAPVI 166 (489)
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHH-HHHHHHHHH
Confidence 66666666554332 2 2235567788899999999999999999997653 35678888888888885 566678888
Q ss_pred hhcccCCCCccccCCcccHHHHHHHHHHHHHH
Q 008482 504 YDREASGEGNKCTGTHCFMLSFFIMGSATLCG 535 (564)
Q Consensus 504 yD~~~~~~~~~C~G~~Cy~~af~i~~~l~v~a 535 (564)
-|..+ ++..|.+..+..+++
T Consensus 167 ~~~~g------------w~~~F~i~~i~~~~~ 186 (489)
T PRK10207 167 ADKFG------------YSVTYNLCGAGLIIA 186 (489)
T ss_pred HHhhC------------hHHHHHHHHHHHHHH
Confidence 77643 799998865433333
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=2.1e-06 Score=91.21 Aligned_cols=154 Identities=13% Similarity=0.059 Sum_probs=108.1
Q ss_pred hhcHHHHHHHHHHHhhhhchhheecchhH-HHhhcCCCccchhHHHHHHHHHHHHhhhhhhhhhhhhhhcccCchhHHHH
Q 008482 347 ICTLEFWILSFAMACGMGSGLATVNNISQ-IGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMV 425 (564)
Q Consensus 347 l~t~~Fwll~~~~~~~~g~gl~~i~n~~~-i~~~~g~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~R~~~l~ 425 (564)
..+..+|.+++..++.....-+...-++. +.+++|.++.+.+..++...+...++++.+|+++||+++|+ .+.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~------~l~ 85 (392)
T PRK12382 12 SANFSLFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKR------SAL 85 (392)
T ss_pred cccccHHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchH------HHH
Confidence 35567888877776664443344444443 34678999999999999999999999999999999997532 233
Q ss_pred HHHHHHHHHHH---HHHh------cCcchHHHHHHHHHhhhccccchhHHHHHHhhccCchhhhhhhHhhhhhhHHHhhh
Q 008482 426 ITLAAMSIGHL---IIAS------GLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFS 496 (564)
Q Consensus 426 ~~~~l~~i~~l---l~~~------~~~~~l~~~~~l~G~~~G~~~~~~P~ivse~FG~k~fg~nyg~~~~a~~iG~~lf~ 496 (564)
...++..++.+ +... .....+++.-.+.|++.+.......+.+.|.+..|+.++..|+...+...|.. ++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~-~g 164 (392)
T PRK12382 86 QGMLACGLAGLAYLLAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALA-AG 164 (392)
T ss_pred HHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHH-HH
Confidence 33333322221 1111 11123666778899999988877778889999999999999988877776664 56
Q ss_pred hhhhhhhhhcc
Q 008482 497 VRVVGYIYDRE 507 (564)
Q Consensus 497 ~~l~g~iyD~~ 507 (564)
+.+.+.+++..
T Consensus 165 ~~~~~~l~~~~ 175 (392)
T PRK12382 165 APLGLLLHSHF 175 (392)
T ss_pred HHHHHHHHhcc
Confidence 66778887754
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.45 E-value=4.3e-06 Score=92.88 Aligned_cols=384 Identities=18% Similarity=0.100 Sum_probs=214.7
Q ss_pred hhhHHHHhhhhhccc-cccchhhhccccCCCCCCCccchhhhcccCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHH
Q 008482 49 TLDTVSVFKDIGANT-GTLSGVLYTYSTSDHSSHHPRQQRLTRLLGPWVVLLVGAIQCFAGYFLMWASVVGLIPRPPVPV 127 (564)
Q Consensus 49 ~~~~i~~a~~vg~~~-g~~~G~l~d~~~~~~~~~~~~~~~~~~~~GP~~~~~iG~vl~~~Gy~~~~l~~~g~i~~~~~~~ 127 (564)
+.+.+.....+|..+ .+++|.+.|++| .|.+++++.+++.+|++++..+. +++.
T Consensus 90 ~~s~~~s~~~lga~~g~l~~g~l~d~~G------------------Rk~~l~~~~~~~~iG~ii~~~a~-------~~~~ 144 (513)
T KOG0254|consen 90 RQGLLTSILNLGALVGSLLAGRLGDRIG------------------RKKTLLLAVVLFLIGAIIIALAP-------SWYQ 144 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh------------------hHHHHHHHHHHHHHHHHHHHHhh-------hHHH
Confidence 457888899999877 578898888875 99999999999999999976653 4566
Q ss_pred HHHHHHHHhhhhhhhhHHHHHHHhhhcCC-CCcceeeeehhhhhhhHHHHHHHHHhhcCCC--chhHHHHHHHHHHHHhh
Q 008482 128 MCLFMLFAAHGMTFFNTADVVTSVRNFPT-YSGTAVGIMKGFVGLSGAILIQVYQTFFNNK--PTSYLLLLALLASIDPL 204 (564)
Q Consensus 128 l~~~~~l~G~g~~~~~ta~l~t~~k~FP~-~RG~a~Gl~~a~~GLsa~i~s~i~~~~f~~~--~~~~llfla~~p~~~~~ 204 (564)
+..-=++.|+|.|.....+-+-...-=|. .||..+.+...... .+.++..+...+.+++ .=++.+.++..|.+...
T Consensus 145 l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~-~Gi~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~ 223 (513)
T KOG0254|consen 145 LIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFIT-IGILLGYCINYGTSKVYAGWRIPLGLALIPAVILA 223 (513)
T ss_pred HHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHH-HHHHHHHHHhhhhccCCccHHHHHHHHHHHHHHHH
Confidence 67777888898888775555545544475 79999998888888 4445555555555554 34466666666666555
Q ss_pred hhheeeeeccCCCCcccccchhHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHhhhhhhhhhccCCCCCCC
Q 008482 205 LLMWFVRICNTNEGNEKKHLNSFSLIALIVAAYLMVIIILEHIFALPFLVRVLTLILLLLLLASPLYVAIRVQGSDSDRT 284 (564)
Q Consensus 205 ~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~p~~~~~~~~~~~~~~~ 284 (564)
++++++. .. ++. .. - ..+..+.. ..+..+ ... .+++..
T Consensus 224 ~~~~~~p---es-----p~~---L~----------~---------~g~~~~a~---~~l~~l--------~g~-~~~~~~ 261 (513)
T KOG0254|consen 224 LGMLFLP---ES-----PRW---LI----------E---------KGRLEEAK---RSLKRL--------RGL-SPEDVE 261 (513)
T ss_pred HHHHhCC---CC-----hHH---HH----------H---------cCChHHHH---HHHHHH--------hCC-CCcchH
Confidence 5544432 11 000 00 0 00000000 000000 000 000000
Q ss_pred CcCccccCCCCCCCccchhhhccccCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCcHH----HHhhcHHHHHHHHHHH
Q 008482 285 SETSFCEEDELTDDPHEMHAEKMHVRQDPVGYHRLPSEPDVGTDTNDATTSLWGGDLDLL----QAICTLEFWILSFAMA 360 (564)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~----~~l~t~~Fwll~~~~~ 360 (564)
.+ .++.......+.+ . ...+..++ ...+++-++.+.+..+
T Consensus 262 ---------------~~--~~~~~~~~~~~~~-----~--------------~~~~~~~~~l~~~~~~~~~~i~~~l~~f 305 (513)
T KOG0254|consen 262 ---------------VE--LELLKIKLLVEAE-----V--------------AEGKASWGELFSPKVRKRLIIGLLLQLF 305 (513)
T ss_pred ---------------HH--HHHHHHHHHHhhh-----c--------------ccccccHHHhcCcchHHHHHHHHHHHHH
Confidence 00 0000000000000 0 00001112 2234455665555555
Q ss_pred hhhhchhheecchhHHHhhcCCCccchhHHHHHHHHHHHHhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHh
Q 008482 361 CGMGSGLATVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIAS 440 (564)
Q Consensus 361 ~~~g~gl~~i~n~~~i~~~~g~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~R~~~l~~~~~l~~i~~ll~~~ 440 (564)
-....--.++.-..++.+..|..... .....+.++.|.++-++..++-||++ |...+......+.++++++..
T Consensus 306 qq~tG~~~~~~Y~~~if~~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~g------Rr~lll~s~~~m~~~~~~~~~ 378 (513)
T KOG0254|consen 306 QQLTGINYVFYYSTTIFKSAGLKSDT-FLASIILGVVNFLGTLVATYLVDRFG------RRKLLLFGAAGMSICLVILAV 378 (513)
T ss_pred HHHhCCceEEeehHHHHHhcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHhc------cHHHHHHhHHHHHHHHHHHHH
Confidence 55544456777788888888887443 56667788899999999999999994 445566667777776665431
Q ss_pred ------cC---c---c-hHHHHHHHHHhhhccccchhHH-HHHHhhccCchhhhhhhHhhhhhhHHHhhhhhhhhhhhhc
Q 008482 441 ------GL---P---G-ALYAGSILVGVCYGSQWSLMPT-IASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDR 506 (564)
Q Consensus 441 ------~~---~---~-~l~~~~~l~G~~~G~~~~~~P~-ivse~FG~k~fg~nyg~~~~a~~iG~~lf~~~l~g~iyD~ 506 (564)
.. . . ......++.-.++...++-.|- +.+|.|-.|.=++-.++....+-+..++. ...|..
T Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v-----~~~~~~ 453 (513)
T KOG0254|consen 379 VGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLI-----SFFFPF 453 (513)
T ss_pred HHHHhccCCCcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHH-----HHHHHH
Confidence 10 0 1 1223344455567777777776 66999988766666665554444444332 222111
Q ss_pred ccCCCCccccCCcccHHHHHHHHHHHHHHHH-HHHHHHHhhhHHHHHHHHH
Q 008482 507 EASGEGNKCTGTHCFMLSFFIMGSATLCGSL-AAFGLFLRTKRFYNEVILR 556 (564)
Q Consensus 507 ~~~~~~~~C~G~~Cy~~af~i~~~l~v~a~v-l~~~l~~r~~~~~~~~~~~ 556 (564)
... ... ....|....+.+.++.+ ...+....||..-.+++++
T Consensus 454 ~~~------~~~--~~~~f~~f~~~~~~~~~~fv~~~~pETkg~sleei~~ 496 (513)
T KOG0254|consen 454 ITE------ALG--IGGTFGYFGGICLLSLIIFVFFFVPETKGLTLEEINE 496 (513)
T ss_pred HHH------hcc--ccchHHHHHHHHHHHHHHHheEEcccCCCCcHHHHHH
Confidence 100 000 25566666667766665 4555555666533333333
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=2.8e-06 Score=91.16 Aligned_cols=140 Identities=16% Similarity=0.137 Sum_probs=107.8
Q ss_pred cchhHHHhhcCCCccchhHHHHHHHHHHHHhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHh-cCcchHHHH
Q 008482 371 NNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIAS-GLPGALYAG 449 (564)
Q Consensus 371 ~n~~~i~~~~g~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~R~~~l~~~~~l~~i~~ll~~~-~~~~~l~~~ 449 (564)
..+..|.++.|.++.+.+...++..+...++.+.+|+++||+++ .+.+.....+.+++.++... .....+++.
T Consensus 39 ~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~------r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~ 112 (426)
T PRK12307 39 YIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGR------KPLMMWSIVAYSVGTGLSGLASGVIMLTLS 112 (426)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC------hHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 34455667889998888999999999999999999999999953 34455666666666554432 233357777
Q ss_pred HHHHHhhhccccchhHHHHHHhhccCchhhhhhhHhhhhhhHHHhhhhhhhhhhhhcccCCCCccccCCcccHHHHHHHH
Q 008482 450 SILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSFFIMG 529 (564)
Q Consensus 450 ~~l~G~~~G~~~~~~P~ivse~FG~k~fg~nyg~~~~a~~iG~~lf~~~l~g~iyD~~~~~~~~~C~G~~Cy~~af~i~~ 529 (564)
-.+.|++.|..+.....++.|.|..|+-++..|+...+..+|+. +++.+.+.+.|..+ ++..|.+..
T Consensus 113 r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~-~~~~l~~~l~~~~~------------w~~~f~i~~ 179 (426)
T PRK12307 113 RFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNI-IAAYFMPSFAEAYG------------WRAAFFVGL 179 (426)
T ss_pred HHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHH-HHHHHHHHHcccCC------------HHHHHHHHH
Confidence 88999999999999999999999999899999998888888885 45556666666533 678887643
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.45 E-value=2.1e-06 Score=91.57 Aligned_cols=174 Identities=17% Similarity=0.235 Sum_probs=147.1
Q ss_pred HHHHHHHHHHHhhhhchhheecchhHHHhhcCCCccchhHHHHHHHHHHHHhhhhhhhhhhhhhhcccCchhHHHHHHHH
Q 008482 350 LEFWILSFAMACGMGSGLATVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLA 429 (564)
Q Consensus 350 ~~Fwll~~~~~~~~g~gl~~i~n~~~i~~~~g~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~R~~~l~~~~~ 429 (564)
..-|.+.+.-|+......+...-+++|.+|++.+...+...+|+++..-++|-+....+.||+ +|+..+.....
T Consensus 13 ~~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~------~Rr~lLl~~l~ 86 (394)
T COG2814 13 LALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRL------ERRRLLLGLLA 86 (394)
T ss_pred HHHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccc------chHHHHHHHHH
Confidence 455677777777778888999999999999999999999999999999999999999999999 77778888888
Q ss_pred HHHHHHHHHHhcCc-chHHHHHHHHHhhhccccchhHHHHHHhhccCchhhhhhhHhhhhhhHHHhhhhhhhhhhhhccc
Q 008482 430 AMSIGHLIIASGLP-GALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREA 508 (564)
Q Consensus 430 l~~i~~ll~~~~~~-~~l~~~~~l~G~~~G~~~~~~P~ivse~FG~k~fg~nyg~~~~a~~iG~~lf~~~l~g~iyD~~~ 508 (564)
+..++.++.+.... ..+.++=++.|++-|..|++.-++.+|+=.+++-++-=++++.+..++- ++|.++..++=|.-|
T Consensus 87 lFi~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~-v~GvPLGt~ig~~~G 165 (394)
T COG2814 87 LFIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLAT-VLGVPLGTFLGQLFG 165 (394)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHH-HHhccHHHHHHHHhh
Confidence 88888877654433 3466666999999999999999999999999999999999998877776 467777777777766
Q ss_pred CCCCccccCCcccHHHHHHHHHHHHHHHHHHHHH
Q 008482 509 SGEGNKCTGTHCFMLSFFIMGSATLCGSLAAFGL 542 (564)
Q Consensus 509 ~~~~~~C~G~~Cy~~af~i~~~l~v~a~vl~~~l 542 (564)
.|.+|.+..++.+++.+.....
T Consensus 166 ------------WR~~F~~ia~l~ll~~~~~~~~ 187 (394)
T COG2814 166 ------------WRATFLAIAVLALLALLLLWKL 187 (394)
T ss_pred ------------HHHHHHHHHHHHHHHHHHHHHh
Confidence 6999999999998887444433
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=4e-06 Score=92.62 Aligned_cols=168 Identities=16% Similarity=0.216 Sum_probs=110.1
Q ss_pred HHHHHHHHHHhhhhchhheecchhHHHh-hcCCCccchhHHHHHHHHHHHHhhhhhhhhhhhh-hhcccCchhHHHHHHH
Q 008482 351 EFWILSFAMACGMGSGLATVNNISQIGG-SLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYF-LHVKEWARPLFMVITL 428 (564)
Q Consensus 351 ~Fwll~~~~~~~~g~gl~~i~n~~~i~~-~~g~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~l-~~~~~~~R~~~l~~~~ 428 (564)
.+|.++...+.-..+-.++..-+....+ .+|+++.++...++.+.+...++.++.|+++||+ ++|+ .+.+..
T Consensus 10 ~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr------~iliG~ 83 (493)
T PRK15462 10 AIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRM------AVMLGA 83 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHH------HHHHHH
Confidence 4555555554443333334444555544 4799988888999999999999999999999998 6432 345556
Q ss_pred HHHHHHHHHHHhc--CcchHHHHHHHHHhhhccccchhHHHHHHhhccC--chhhhhhhHhhhhhhHHHhhhhhhhhhhh
Q 008482 429 AAMSIGHLIIASG--LPGALYAGSILVGVCYGSQWSLMPTIASEIFGVL--QMGTIFNTITIANPVGSYIFSVRVVGYIY 504 (564)
Q Consensus 429 ~l~~i~~ll~~~~--~~~~l~~~~~l~G~~~G~~~~~~P~ivse~FG~k--~fg~nyg~~~~a~~iG~~lf~~~l~g~iy 504 (564)
+++.++++++... .+..++++..+++++.|...+..+++++|.|..+ .-.+-+++.+.+..+|+. +++.+.|++.
T Consensus 84 il~~lg~lll~~~~~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~-iap~l~g~L~ 162 (493)
T PRK15462 84 LLMAIGHVVLGASEIHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSI-IAPIACGYAQ 162 (493)
T ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHH-HHHHHHHHHH
Confidence 6666666554422 1223555566677788888888899999999764 233345555544445553 4555678777
Q ss_pred hcccCCCCccccCCcccHHHHHHHHHHHHHHHH
Q 008482 505 DREASGEGNKCTGTHCFMLSFFIMGSATLCGSL 537 (564)
Q Consensus 505 D~~~~~~~~~C~G~~Cy~~af~i~~~l~v~a~v 537 (564)
+..+ |+..|.+.++..+++++
T Consensus 163 ~~~G------------w~~~F~iaaigm~l~li 183 (493)
T PRK15462 163 EEYS------------WAMGFGLAAVGMIAGLV 183 (493)
T ss_pred hhhC------------hHHHHHHHHHHHHHHHH
Confidence 6543 79999887665555553
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.44 E-value=2.6e-06 Score=93.25 Aligned_cols=174 Identities=14% Similarity=0.019 Sum_probs=114.1
Q ss_pred HHHHHHHHHHhhhhchhheec----chhHHHhhcCCCccchhHHHHHHHHHHHHhhhhhhhhhhhhhhcccCchhHHHHH
Q 008482 351 EFWILSFAMACGMGSGLATVN----NISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVI 426 (564)
Q Consensus 351 ~Fwll~~~~~~~~g~gl~~i~----n~~~i~~~~g~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~R~~~l~~ 426 (564)
.+|.++...+++-....+.-+ -..++.+++|.++.+.+...+.+.+..+++.+.+|+++||+++|+ .+.+
T Consensus 26 ~~~~i~~~~~~~~~~~y~~r~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~------~l~~ 99 (467)
T PRK09556 26 PFMQSYLVVFIGYLTMYLIRKNFKAAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQ------FLPF 99 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccc------hHHH
Confidence 466565555555443332212 245667788999888899999999999999999999999996543 3444
Q ss_pred HHHHHHHHHHHHH-----h-cCcchHHHHHHHHHhhhccccchhHHHHHHhhccCchhhhhhhHhhhhhhHHHhhhhhhh
Q 008482 427 TLAAMSIGHLIIA-----S-GLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVV 500 (564)
Q Consensus 427 ~~~l~~i~~ll~~-----~-~~~~~l~~~~~l~G~~~G~~~~~~P~ivse~FG~k~fg~nyg~~~~a~~iG~~lf~~~l~ 500 (564)
..++.+++.+++. . .....+++.-.+.|++.|..+.....+++|+|..|+.|...|+...+..+|+. +++.+.
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~-l~~~i~ 178 (467)
T PRK09556 100 LLILSAICMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGA-GAGGVA 178 (467)
T ss_pred HHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhh-HHHHHH
Confidence 3334333332221 1 22234566667889999999999999999999999999999998877777775 344455
Q ss_pred hhhhhcccCCCCccccCCcccHHHHHHHHHHHHHHHHHHH
Q 008482 501 GYIYDREASGEGNKCTGTHCFMLSFFIMGSATLCGSLAAF 540 (564)
Q Consensus 501 g~iyD~~~~~~~~~C~G~~Cy~~af~i~~~l~v~a~vl~~ 540 (564)
..+.+..-. ...+..|.+.+.+.++..++.+
T Consensus 179 ~~~~~~~~~---------~~~~~~f~~~g~~~~~~~i~~~ 209 (467)
T PRK09556 179 LWGANYFFD---------GHVIGMFIFPSIIALIIGFIGL 209 (467)
T ss_pred HHHHHhhcc---------CcchhHHHHHHHHHHHHHHHHH
Confidence 554443100 0145567665555544443433
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=6.2e-06 Score=90.37 Aligned_cols=188 Identities=14% Similarity=0.117 Sum_probs=121.9
Q ss_pred hhcHHHHHHHHHHHhhhhchhheecchhHHHh-hcCCCccchhHHHHHHHHHHHHhhhhhhhhhhhhhhcccCchhHHHH
Q 008482 347 ICTLEFWILSFAMACGMGSGLATVNNISQIGG-SLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMV 425 (564)
Q Consensus 347 l~t~~Fwll~~~~~~~~g~gl~~i~n~~~i~~-~~g~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~R~~~l~ 425 (564)
+..+.+|+-++.+.++-..-.+.-.-..++.+ +++.++.+....+++..+..+++|+..|.+.||++. |.+. .
T Consensus 31 ~a~r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~-----R~v~-~ 104 (462)
T PRK15034 31 IARRNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGG-----RRWT-V 104 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-----hHHH-H
Confidence 34468898888888876666555444455555 689999999999999999999999999999999973 4333 3
Q ss_pred HHHHHHHHHHHHHHh------cCcchHHHHHHHHHhhhccccchhHHHHHHhhccCchhhhhhhHh----hhhhhHHHhh
Q 008482 426 ITLAAMSIGHLIIAS------GLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTIT----IANPVGSYIF 495 (564)
Q Consensus 426 ~~~~l~~i~~ll~~~------~~~~~l~~~~~l~G~~~G~~~~~~P~ivse~FG~k~fg~nyg~~~----~a~~iG~~lf 495 (564)
+..++.++..++... ++...+++.-.+.|++ |+.|...-..++++|-.|+.|+..|+.. ++..++.++
T Consensus 105 ~~~ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l- 182 (462)
T PRK15034 105 FSTAILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLV- 182 (462)
T ss_pred HHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHH-
Confidence 333333444444332 2333577778899997 8899999999999998888999998873 444444432
Q ss_pred hhhhh-hhhhhcccCCCCccccC-CcccHHHHHHHHHHHHHHHHHHHHH
Q 008482 496 SVRVV-GYIYDREASGEGNKCTG-THCFMLSFFIMGSATLCGSLAAFGL 542 (564)
Q Consensus 496 ~~~l~-g~iyD~~~~~~~~~C~G-~~Cy~~af~i~~~l~v~a~vl~~~l 542 (564)
.+.+. ..+++..+......=.| ..=.+.++.+...+.+++.++.++.
T Consensus 183 ~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~ 231 (462)
T PRK15034 183 APLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSG 231 (462)
T ss_pred HHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 22222 22333322110000001 1225667777777777766666554
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=2.8e-06 Score=95.57 Aligned_cols=170 Identities=14% Similarity=0.109 Sum_probs=114.8
Q ss_pred HHHHHHHHHHHhhhhchhheecch--hHHHhhcCCCccchhHHHHHHHHHHHHhhhhhhhhhhhhhhcccCchhHHHHHH
Q 008482 350 LEFWILSFAMACGMGSGLATVNNI--SQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVIT 427 (564)
Q Consensus 350 ~~Fwll~~~~~~~~g~gl~~i~n~--~~i~~~~g~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~R~~~l~~~ 427 (564)
.+++++...+.+....|.++..++ +++.++.|++..+.+...++.. .-....+..|+++||++ |...+.+.
T Consensus 25 ~Rw~~lva~~~~~~~~g~~y~fsv~s~~L~~~lgls~~~l~~i~svg~-~~g~~~lp~G~L~Dr~G------~R~vllig 97 (591)
T PTZ00207 25 RRFALLVLGAFCSICTSFMYAFNLISGAMQARYNLTQRDLSTITTVGI-AVGYFLLPYSFIYDYLG------PRPIFVLS 97 (591)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHH-HHHHHHHHHHHHHHHhC------cHHHHHHH
Confidence 355666666666666666555444 5666788998877666655533 33456778999999995 44556677
Q ss_pred HHHHHHHHHHHHhc-------CcchHHHHHHHHHhhhccccchhHHHHHHhhccCchhhhhhhHhhhhhhHHHhhhhhhh
Q 008482 428 LAAMSIGHLIIASG-------LPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVV 500 (564)
Q Consensus 428 ~~l~~i~~ll~~~~-------~~~~l~~~~~l~G~~~G~~~~~~P~ivse~FG~k~fg~nyg~~~~a~~iG~~lf~~~l~ 500 (564)
.++.+++.++.... ....+++.-++.|++-|..+......+.++| +++-|...|+...+..+|+.++++. .
T Consensus 98 ~ll~~iG~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~F-p~~RG~a~Gi~~~~~gLGsaI~~~l-~ 175 (591)
T PTZ00207 98 MTVFCLGTLLFALTFQEVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVF-PSNRGAVVAIMKTFTGLGSAILGSI-Q 175 (591)
T ss_pred HHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-hhhhHHHHHHHHHHHHHHHHHHHHH-H
Confidence 77777777665432 2223566667888888878778888899999 5778999999999999999776664 4
Q ss_pred hhhhhcccCCCCccccCCcccHHHHHHHHHHHHHHHHHHHH
Q 008482 501 GYIYDREASGEGNKCTGTHCFMLSFFIMGSATLCGSLAAFG 541 (564)
Q Consensus 501 g~iyD~~~~~~~~~C~G~~Cy~~af~i~~~l~v~a~vl~~~ 541 (564)
..+++. + .+..|++.+++.++..++.+.
T Consensus 176 ~~l~~~--~-----------~~~~fl~l~vl~~vv~ll~~~ 203 (591)
T PTZ00207 176 LAFFSD--N-----------TSAYFFFLMSFALVVGILAIV 203 (591)
T ss_pred HHHHHH--h-----------HHHHHHHHHHHHHHHHHHHHh
Confidence 444431 1 466676666666555544444
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=4.9e-06 Score=88.35 Aligned_cols=152 Identities=11% Similarity=0.021 Sum_probs=112.1
Q ss_pred hcHHHHHHHHHHHhhhhchhheecchhHHHhhcCCCccchhHHHHHHHHHHHHhhhhhhhhhhhhhhcccCchhHHHHHH
Q 008482 348 CTLEFWILSFAMACGMGSGLATVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVIT 427 (564)
Q Consensus 348 ~t~~Fwll~~~~~~~~g~gl~~i~n~~~i~~~~g~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~R~~~l~~~ 427 (564)
.++++|++++..++....-..+..-++++.++.|.+..+....++...+.+.++.+.+|+++||+++| ..+...
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k------~~~~~~ 77 (381)
T PRK03633 4 YTRPVLLLLCGLLLLTLAIAVLNTLVPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFN------RSYYLA 77 (381)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH------HHHHHH
Confidence 35678999888877655544555667888888999988999999999999999999999999999653 334445
Q ss_pred HHHHHHHHHHHH-hcCcchHHHHHHHHHhhhccccchhHHHHHHhhccCchhhhhhhHhhhhhhHHHhhhhhhhhhhhhc
Q 008482 428 LAAMSIGHLIIA-SGLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDR 506 (564)
Q Consensus 428 ~~l~~i~~ll~~-~~~~~~l~~~~~l~G~~~G~~~~~~P~ivse~FG~k~fg~nyg~~~~a~~iG~~lf~~~l~g~iyD~ 506 (564)
..+.+++.++.. .++...+++.-++.|++.|..+......+.+.+-.++-++..|....+..+|.. .++.+.+.+.+.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~g~~~~~~l~~~ 156 (381)
T PRK03633 78 SLIFAAGCAGLGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTV-LGQLLVSKVSTE 156 (381)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhccccc
Confidence 555555554433 233335666778889999988777767777887777888888887776666664 456567766654
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=8.8e-06 Score=87.04 Aligned_cols=166 Identities=13% Similarity=0.132 Sum_probs=117.7
Q ss_pred HHHHHHHHHHhhhhchhhe--e-cchhHHHhhcCCCccchhHHHHHHHHHHHHhhhhhhhhhhhhhhcccCchhHHHHHH
Q 008482 351 EFWILSFAMACGMGSGLAT--V-NNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVIT 427 (564)
Q Consensus 351 ~Fwll~~~~~~~~g~gl~~--i-~n~~~i~~~~g~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~R~~~l~~~ 427 (564)
.=|++...++.+.-...++ + .-++++.++.|.+..+.+..+|+..+...++-+..|+++||++ |+..+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G------~r~~l~~~ 80 (393)
T PRK09705 7 LNFMLLVLVLIGLNMRPLLTSVGPLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVS------ERRSVAIS 80 (393)
T ss_pred hHHHHHHHHHHHHHcchhhhccchhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhC------chHHHHHH
Confidence 3466656555554443222 1 2245566778999888999999999999999999999999995 44456777
Q ss_pred HHHHHHHHHHHHh-cCcchHHHHHHHHHhhhccccchhHHHHHHhhccCchhhhhhhHhhhhhhHHHhhhhhhhhhhhhc
Q 008482 428 LAAMSIGHLIIAS-GLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDR 506 (564)
Q Consensus 428 ~~l~~i~~ll~~~-~~~~~l~~~~~l~G~~~G~~~~~~P~ivse~FG~k~fg~nyg~~~~a~~iG~~lf~~~l~g~iyD~ 506 (564)
..+.+++.++... ++...+++.-++.|++.|......+.++.|.|. ++-+...|....+..+|+. +++.+.+.+.+.
T Consensus 81 ~~l~~~~~~~~~~a~~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~-~g~~~~~~l~~~ 158 (393)
T PRK09705 81 LLLIAVGALMRELYPQSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGG-LGAAITPWLVQH 158 (393)
T ss_pred HHHHHHHHHHHHHCcchHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHH-HHHHHHHHHHHh
Confidence 7777777766553 334457778899999999999999999999996 7788888887766555554 344456666665
Q ss_pred ccCCCCccccCCcccHHHHHHHHHHHHHH
Q 008482 507 EASGEGNKCTGTHCFMLSFFIMGSATLCG 535 (564)
Q Consensus 507 ~~~~~~~~C~G~~Cy~~af~i~~~l~v~a 535 (564)
..+ ++.+|.+.....++.
T Consensus 159 ~~~-----------w~~~~~~~~~~~~~~ 176 (393)
T PRK09705 159 SET-----------WYQTLAWWALPAVVA 176 (393)
T ss_pred cCC-----------HHHHHHHHHHHHHHH
Confidence 433 567766655444443
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=98.32 E-value=3.1e-06 Score=88.70 Aligned_cols=145 Identities=18% Similarity=0.167 Sum_probs=103.2
Q ss_pred hhHHHhhcCCCccchhHHHHHHHHHHHHhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHhcCcchHHHHHHH
Q 008482 373 ISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIASGLPGALYAGSIL 452 (564)
Q Consensus 373 ~~~i~~~~g~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~R~~~l~~~~~l~~i~~ll~~~~~~~~l~~~~~l 452 (564)
+.++.++.|.++.+.+...++..+...++.+..|+++||+++|+ .+.+...+..++.++.....+..+++..++
T Consensus 23 lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 96 (355)
T TIGR00896 23 LPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEER------SVAAGLLLIAAGILIRSAPGTALLFAGTAL 96 (355)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchH------HHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 55677889999999999999999999999999999999997543 233344444444433322333356667788
Q ss_pred HHhhhccccchhHHHHHHhhccCchhhhhhhHhhhhhhHHHhhhhhhhhhhhhcccCCCCccccCCcccHHHHHHHHHHH
Q 008482 453 VGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSFFIMGSAT 532 (564)
Q Consensus 453 ~G~~~G~~~~~~P~ivse~FG~k~fg~nyg~~~~a~~iG~~lf~~~l~g~iyD~~~~~~~~~C~G~~Cy~~af~i~~~l~ 532 (564)
.|++.|......|.++.|.| .++-++..|+...+..+|.. +++.+.+.+.|..+.. ++..|.+..+++
T Consensus 97 ~g~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~-i~~~~~~~l~~~~~~~----------w~~~f~~~~~~~ 164 (355)
T TIGR00896 97 IGVGIAIINVLLPSLIKRDF-PQRVGLMTGLYSMALMGGAA-LAAAATVPLAQHSGGH----------WQQALAWWALPA 164 (355)
T ss_pred HHHHHHHHhccchHHHHHhC-cchhhHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhhh----------HHHHHHHHHHHH
Confidence 89999998889999999999 47788888888777667664 4555566666653321 567777665544
Q ss_pred HHH
Q 008482 533 LCG 535 (564)
Q Consensus 533 v~a 535 (564)
+++
T Consensus 165 ~~~ 167 (355)
T TIGR00896 165 LLA 167 (355)
T ss_pred HHH
Confidence 443
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=6.9e-06 Score=89.50 Aligned_cols=148 Identities=18% Similarity=0.055 Sum_probs=99.3
Q ss_pred CCCccchhHHHHHHHHHHHHhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHhc----------C---cchHH
Q 008482 381 GYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIASG----------L---PGALY 447 (564)
Q Consensus 381 g~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~R~~~l~~~~~l~~i~~ll~~~~----------~---~~~l~ 447 (564)
+.++.+.+..++.+.++..+|-+++|+++||++|| ..+.+...+..++.++.+.. . ...++
T Consensus 51 ~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr------~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~ 124 (479)
T PRK10077 51 SAANSLLGFCVASALIGCIIGGALGGYCSNRFGRR------DSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFV 124 (479)
T ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccH------HHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHH
Confidence 66667778999999999999999999999999643 34455555555554432210 1 11345
Q ss_pred HHHHHHHhhhccccchhHHHHHHhhccCchhhhhhhHhhhhhhHHHhhhhhhhhhhhhcccCCCCccccCCcccHHHHHH
Q 008482 448 AGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSFFI 527 (564)
Q Consensus 448 ~~~~l~G~~~G~~~~~~P~ivse~FG~k~fg~nyg~~~~a~~iG~~lf~~~l~g~iyD~~~~~~~~~C~G~~Cy~~af~i 527 (564)
+.-++.|++.|+.+...+++++|++..|+-|...|+...+..+|.. +++. .+...+..... ... +..-++..|.+
T Consensus 125 ~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~-~~~~-~~~~~~~~~~~--~~~-~~~gWr~~f~~ 199 (479)
T PRK10077 125 IYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQL-VVYF-VNYFIARSGDA--SWL-NTDGWRYMFAS 199 (479)
T ss_pred HHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHH-HHHH-HHHHHhccCcc--ccc-ccCChHHHHHH
Confidence 6668999999999999999999999999999988888777777764 3432 33222211000 000 01127888888
Q ss_pred HHHHHHHHHHHH
Q 008482 528 MGSATLCGSLAA 539 (564)
Q Consensus 528 ~~~l~v~a~vl~ 539 (564)
.++..++..++.
T Consensus 200 ~~~~~~~~~~~~ 211 (479)
T PRK10077 200 EAIPALLFLMLL 211 (479)
T ss_pred HHHHHHHHHHHH
Confidence 776666655443
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.31 E-value=2.6e-05 Score=81.64 Aligned_cols=407 Identities=14% Similarity=0.122 Sum_probs=213.5
Q ss_pred HHHHHHHHHhcCcccccccccHHHHhhcCCCcchhhHHHHhhhhhccc-cccchhhhccccCCCCCCCccchhhhcccCc
Q 008482 16 TVASIWIQCTSGSLYTFSIYSPALKTTQHYDQTTLDTVSVFKDIGANT-GTLSGVLYTYSTSDHSSHHPRQQRLTRLLGP 94 (564)
Q Consensus 16 l~a~~~i~l~~G~~Y~fS~ys~~L~~~lg~sq~~~~~i~~a~~vg~~~-g~~~G~l~d~~~~~~~~~~~~~~~~~~~~GP 94 (564)
.++++--+.-++-.-.=|..+|.+.+..|.+..|.+.++..-+.|+.. ....|+..|++| .
T Consensus 81 ~~ag~gwmad~m~~m~~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~g------------------r 142 (528)
T KOG0253|consen 81 FVAGMGWMADAMEMMLLSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIG------------------R 142 (528)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhhh------------------c
Confidence 344443334444444457889999999999999999999999999987 468899999876 5
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHhhhc-C-CCCcceeeeehhhhhh
Q 008482 95 WVVLLVGAIQ-CFAGYFLMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNF-P-TYSGTAVGIMKGFVGL 171 (564)
Q Consensus 95 ~~~~~iG~vl-~~~Gy~~~~l~~~g~i~~~~~~~l~~~~~l~G~g~~~~~ta~l~t~~k~F-P-~~RG~a~Gl~~a~~GL 171 (564)
|+...+-.+. +..||+ ++.- +++..+|+|-++.|+|.|- +... .+----| | .+|++-+=.. +++..
T Consensus 143 r~~f~~T~l~t~v~~~i------s~~s--pnf~~L~~f~~l~~~g~gg-~pv~-~~~yle~lp~~~r~~~~V~~-~~wai 211 (528)
T KOG0253|consen 143 RKGFNLTFLVTGVFGVI------SGAS--PNFASLCVFRALWGFGVGG-LPVD-SAIYLEFLPSSHRWLLTVMS-FFWAI 211 (528)
T ss_pred chhhhhhHHHHHHHHHh------hcCC--CCeehhhHHHHHHhccCCC-ccHh-HHHHHHhccCcCCCcchhHH-HHHHH
Confidence 5533322211 112332 3443 4566688899999999887 4333 3333334 7 4788766555 77777
Q ss_pred hHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhhhhheee-eeccCC--CCcccccchhHHHHHHHHHHHHHHHHHHhhhc
Q 008482 172 SGAILIQVYQTFFNNKPTSYLLLLALLASIDPLLLMWFV-RICNTN--EGNEKKHLNSFSLIALIVAAYLMVIIILEHIF 248 (564)
Q Consensus 172 sa~i~s~i~~~~f~~~~~~~llfla~~p~~~~~~~~~~i-~~~~~~--~~~~~~~~~~~~~~~i~~~~y~~~~~~~~~~~ 248 (564)
+..+-..+.-..-++-.=+|++|+..+|+.......+-+ +.+.+. .+++.|.... +
T Consensus 212 g~v~ea~law~vm~~~gwr~~l~~~~~pl~~~a~f~~w~~ESpRf~~~~G~~~kAlet-----------------L---- 270 (528)
T KOG0253|consen 212 GQVFEALLAWGVMSNFGWRYLLFTSSTPLMFAARFLVWVYESPRFYLAKGDDYKALET-----------------L---- 270 (528)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHhhcccCcchhhhcCChHHHHHH-----------------H----
Confidence 776655555444344466888888888876533222111 111110 0111111100 0
Q ss_pred cCchHHHHHHHHHHHHHHhhhhhhhhh-cc-CCCCCCC-CcCccccCCCCCCCccchhhhccccCCCCCCCCCCCCCCCC
Q 008482 249 ALPFLVRVLTLILLLLLLASPLYVAIR-VQ-GSDSDRT-SETSFCEEDELTDDPHEMHAEKMHVRQDPVGYHRLPSEPDV 325 (564)
Q Consensus 249 ~~~~~~~~~~~~~~~~ll~~p~~~~~~-~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (564)
.+++ -.+ .+ +.+.... ..+..|+++..+++. ..
T Consensus 271 -----~kiA---------------rmNg~qlplgvl~~s~~~~~e~e~~~~~~~------------------------~~ 306 (528)
T KOG0253|consen 271 -----HKIA---------------RMNGKQLPLGVLESSAIDRQEQEESDLDDS------------------------KS 306 (528)
T ss_pred -----HHHH---------------HhcCCCCCcceeeeehhhhhhhhhhchhhh------------------------hh
Confidence 0000 000 00 0000000 000000000000000 00
Q ss_pred CCCCCCCCccCCCCCCcHHHHhhcHHHHHHHHHHHhhhhchhheecchhHHHhhcCCC---------------ccchh--
Q 008482 326 GTDTNDATTSLWGGDLDLLQAICTLEFWILSFAMACGMGSGLATVNNISQIGGSLGYS---------------SFETS-- 388 (564)
Q Consensus 326 ~~~~~~~~~~~~~~~~t~~~~l~t~~Fwll~~~~~~~~g~gl~~i~n~~~i~~~~g~~---------------~~~aa-- 388 (564)
+.++++..+. ..=.+.+=..+|...|-+|+.-...--....++..+-|+..+-+.. .....
T Consensus 307 ~a~ke~rg~~--~nLlsp~lrkttlllw~iwfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dY 384 (528)
T KOG0253|consen 307 SAAKEVRGGT--TNLLSPKLRKTTLLLWRIWFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDY 384 (528)
T ss_pred ccccccccch--HhhcChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHH
Confidence 0000000000 0012334445677778888776665333333333444444332211 01111
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHhc-Ccc----hHHHHHHHHHhhhccccch
Q 008482 389 SLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIASG-LPG----ALYAGSILVGVCYGSQWSL 463 (564)
Q Consensus 389 ~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~R~~~l~~~~~l~~i~~ll~~~~-~~~----~l~~~~~l~G~~~G~~~~~ 463 (564)
-=+=+.++.-+.|-++.|++-||+|||+ .+++.+++.++..+++... .+. .+..+.+.+-.+|+...
T Consensus 385 rdllitslaefPGlLIt~~iverlGRKk------TMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg~fqvaY-- 456 (528)
T KOG0253|consen 385 RDLLITSLAEFPGLLITGVIVERLGRKK------TMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAFQVAY-- 456 (528)
T ss_pred HHHHHHHHhhCCchhHHHHHHHHhcchh------HHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchheEEE--
Confidence 1233567788999999999999996554 4677777777665554322 222 24445555555555554
Q ss_pred hHHHHHHhhccCchhhhhhhHhhhhhhHHHhhhhhhhhhhhhcccCCCCccccCCcccHHHHHHHHHHHHHHHHHHHHHH
Q 008482 464 MPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSFFIMGSATLCGSLAAFGLF 543 (564)
Q Consensus 464 ~P~ivse~FG~k~fg~nyg~~~~a~~iG~~lf~~~l~g~iyD~~~~~~~~~C~G~~Cy~~af~i~~~l~v~a~vl~~~l~ 543 (564)
..+.|.|-++-=++--|......=+|.+ +++.++ ...+.+ -..+..+..+++.++.+++.++-
T Consensus 457 --vYtPEVyPTavRatgvGtcSsmaRIggI-~~p~iA-~~~e~s-------------~sl~i~vy~~~~ilagIavcffP 519 (528)
T KOG0253|consen 457 --VYTPEVYPTAVRATGVGTCSSMARIGGI-FSPVIA-MRAELS-------------TSLPIFVYGALFILAGIAVCFFP 519 (528)
T ss_pred --EecCcccchhhhhcchhhhhhHHhhhhh-hhhHHH-HHhccc-------------eeehHHHHHHHHHHHHHHheeee
Confidence 5566888877777777888877888885 677555 333332 24455556666666665554443
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=98.30 E-value=2.4e-06 Score=75.39 Aligned_cols=131 Identities=11% Similarity=0.143 Sum_probs=96.5
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHh-cCcchHHHHHHHHHhhhccccchhHHHHH
Q 008482 391 ISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIAS-GLPGALYAGSILVGVCYGSQWSLMPTIAS 469 (564)
Q Consensus 391 Vsl~si~n~~GRl~~G~lsD~l~~~~~~~R~~~l~~~~~l~~i~~ll~~~-~~~~~l~~~~~l~G~~~G~~~~~~P~ivs 469 (564)
.+..++.+.++.+..|++.||+++| ..+.....+..++.++... .....+.+...+.|++.|.........+.
T Consensus 4 ~~~~~~~~~~~~~~~g~~~d~~g~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 77 (141)
T TIGR00880 4 LAGYALGQLIYSPLSGLLTDRFGRK------PVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIA 77 (141)
T ss_pred EEeehhHHHHHHhhHHHHHhhcchh------HHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 3456788889999999999999543 3344444455555444332 22334566678899999999999999999
Q ss_pred HhhccCchhhhhhhHhhhhhhHHHhhhhhhhhhhhhcccCCCCccccCCcccHHHHHHHHHHHHHHHHHHH
Q 008482 470 EIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSFFIMGSATLCGSLAAF 540 (564)
Q Consensus 470 e~FG~k~fg~nyg~~~~a~~iG~~lf~~~l~g~iyD~~~~~~~~~C~G~~Cy~~af~i~~~l~v~a~vl~~ 540 (564)
|.+..++.++..++......+|.. +++.+.+.+.|..+ ++..|.+....++++.+...
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~ 135 (141)
T TIGR00880 78 DIYPPEERGVALGLMSAGIALGPL-LGPPLGGVLAQFLG------------WRAPFLFLAILALAAFILLA 135 (141)
T ss_pred HHCChhhhhHHHHHHHHhHHHHHH-HhHHhHHHHhcccc------------hHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999888888875 56778888887643 67888888777766664443
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.29 E-value=4.8e-05 Score=84.45 Aligned_cols=118 Identities=19% Similarity=0.115 Sum_probs=90.4
Q ss_pred cccccHHHH-hhcCCCcchhhHHHHhhhhhcccc-ccchhhhccccCCCCCCCccchhhhcccCcHHHHHHHHHHHHHHH
Q 008482 32 FSIYSPALK-TTQHYDQTTLDTVSVFKDIGANTG-TLSGVLYTYSTSDHSSHHPRQQRLTRLLGPWVVLLVGAIQCFAGY 109 (564)
Q Consensus 32 fS~ys~~L~-~~lg~sq~~~~~i~~a~~vg~~~g-~~~G~l~d~~~~~~~~~~~~~~~~~~~~GP~~~~~iG~vl~~~Gy 109 (564)
-+.|++..+ +.++.+....+...+...+|..+| ++.|.+.|++| +|++++++.++..++-
T Consensus 101 ~~~~s~~~~~~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~G------------------Rk~~~~~~~~~~~i~~ 162 (521)
T KOG0255|consen 101 SSVYSIVSEWNLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFG------------------RKPVLLVSLLLFIIFG 162 (521)
T ss_pred CCcccccchhceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcc------------------cHHHHHHHHHHHHHHH
Confidence 344555554 455666666667777888888774 67888888765 9999999998888877
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHhhhc-CCCCcceeeeehhhhhhhHHH
Q 008482 110 FLMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNF-PTYSGTAVGIMKGFVGLSGAI 175 (564)
Q Consensus 110 ~~~~l~~~g~i~~~~~~~l~~~~~l~G~g~~~~~ta~l~t~~k~F-P~~RG~a~Gl~~a~~GLsa~i 175 (564)
++ +... ++++.++.+=++.|++.+..++.+....+.++ |++|+.+..+ ..++-..+.+
T Consensus 163 ~~-----~a~a--~~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~ 221 (521)
T KOG0255|consen 163 IL-----TAFA--PNYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLM 221 (521)
T ss_pred HH-----HHHh--CcHHHHHHHHHHHHhhccchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHH
Confidence 65 4444 47889999999999999999999999999999 5789999888 5554444433
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=98.28 E-value=5.1e-06 Score=93.29 Aligned_cols=175 Identities=18% Similarity=0.176 Sum_probs=120.0
Q ss_pred hcHHHHHHHHHHHhhhhchh---hee-cchhHHHhhcCCCccchhHHHHHHHHHHHHhhhhhhhhhhhhhhcccCchhHH
Q 008482 348 CTLEFWILSFAMACGMGSGL---ATV-NNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLF 423 (564)
Q Consensus 348 ~t~~Fwll~~~~~~~~g~gl---~~i-~n~~~i~~~~g~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~R~~~ 423 (564)
++++|+..+.++.+...+.. ..- +-+.+|.+++|.++ ..+++++..++.++.+-.+.|-+||.+ +|+++
T Consensus 38 ~s~~~i~~~~~~~~~~~~~~~~~~~~a~~l~~I~~diG~~~-~~~w~~~~~~l~~av~~~~~G~LSDlf------GRr~~ 110 (599)
T PF06609_consen 38 RSPRFIASFAAFSLAVIAAYFVLVLPASILPYINADIGGSD-NWSWFSTAWTLASAVSFPFVGRLSDLF------GRRYF 110 (599)
T ss_pred eCHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHhcCCCc-cchHHHHHHHHHHHHHHHhhHHHHHHh------cchHH
Confidence 55777777766655433222 111 22567888998764 567888889999999999999999999 56678
Q ss_pred HHHHHHHHHHHHHHHHhc-CcchHHHHHHHHHhhhccccchhHHHHHHhhccCchhhhhhhHhhhhhhHHHhhhhhhhhh
Q 008482 424 MVITLAAMSIGHLIIASG-LPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGY 502 (564)
Q Consensus 424 l~~~~~l~~i~~ll~~~~-~~~~l~~~~~l~G~~~G~~~~~~P~ivse~FG~k~fg~nyg~~~~a~~iG~~lf~~~l~g~ 502 (564)
+....++..+|+...+.. +...+..+..+.|+++|... +....++|.--.|+-+.-+.+......+.. ..++.++..
T Consensus 111 ~i~g~~l~vvG~Iv~atA~~~~~~iag~~l~GvgaG~~~-~~~~~isEl~p~k~R~~~~~~~~~~~i~~~-~~~~~ia~~ 188 (599)
T PF06609_consen 111 FIIGSLLGVVGSIVCATAQNMNTFIAGMVLYGVGAGVQE-LAALAISELVPNKWRGLGLAIASIPFIITT-WISPLIAQL 188 (599)
T ss_pred HHHHHHHHHhHHHHhhcCCcHHHHHHHHHHHHHhhHHHH-HHHHHHHHhcccchhhhHhHHHHHHHHhhh-cccHHHHHH
Confidence 888888888888776543 33357778899999998886 456678999987766544444433322222 234433434
Q ss_pred hhhcccCCCCccccCCcccHHHHHHHHHHHHHHHHHHHHHH
Q 008482 503 IYDREASGEGNKCTGTHCFMLSFFIMGSATLCGSLAAFGLF 543 (564)
Q Consensus 503 iyD~~~~~~~~~C~G~~Cy~~af~i~~~l~v~a~vl~~~l~ 543 (564)
++. +++ .|+.|++..+...+++++..+..
T Consensus 189 ~~~-~~~-----------WRw~~~~~~i~~~i~~vl~~~fY 217 (599)
T PF06609_consen 189 FAA-HSG-----------WRWIFYIFIIWSGIALVLIFFFY 217 (599)
T ss_pred hcc-CCC-----------cchHHHHHHHHHHHHHHHHHHHh
Confidence 433 344 69999999888888886655443
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.23 E-value=1.4e-05 Score=84.96 Aligned_cols=165 Identities=16% Similarity=0.085 Sum_probs=108.5
Q ss_pred HHHHHHHHHHhhhhchhheecchhH-HHhhcCCCccchhHHHHHHHHHHHHhhhhhhhhhhhhhhcccCchhHHHHHHHH
Q 008482 351 EFWILSFAMACGMGSGLATVNNISQ-IGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLA 429 (564)
Q Consensus 351 ~Fwll~~~~~~~~g~gl~~i~n~~~-i~~~~g~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~R~~~l~~~~~ 429 (564)
+|..+.+..++.....-+...-++. +.++.|.++.+.+...++..+...++.+.+|+++||+++|+ .+....+
T Consensus 16 ~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~------~l~~~~~ 89 (399)
T PRK05122 16 RIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKK------AVVFGLC 89 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcc------hHHHHHH
Confidence 4444444444432222233334444 45678999888999999999999999999999999997543 2333333
Q ss_pred HHHHHHH---HHHhcC------cchHHHHHHHHHhhhccccchhHHHHHHhhccCchhhhhhhHhhhhhhHHHhhhhhhh
Q 008482 430 AMSIGHL---IIASGL------PGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVV 500 (564)
Q Consensus 430 l~~i~~l---l~~~~~------~~~l~~~~~l~G~~~G~~~~~~P~ivse~FG~k~fg~nyg~~~~a~~iG~~lf~~~l~ 500 (564)
+.+++.+ +..... ...+++.-.+.|++.|.........+.|.+..|+.++..++...+..+|.. +++.+.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~-~g~~l~ 168 (399)
T PRK05122 90 GCALSGLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALA-IGAPLG 168 (399)
T ss_pred HHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHH-HHHHHH
Confidence 3333222 111111 113566678999999999888888899999999999988887766666653 566677
Q ss_pred hhhhhcccCCCCccccCCcccHHHHHHHHHHHHH
Q 008482 501 GYIYDREASGEGNKCTGTHCFMLSFFIMGSATLC 534 (564)
Q Consensus 501 g~iyD~~~~~~~~~C~G~~Cy~~af~i~~~l~v~ 534 (564)
+.+.+..+ ++..|.+...++++
T Consensus 169 ~~l~~~~g------------~~~~~~~~~~~~~~ 190 (399)
T PRK05122 169 VLLYHWGG------------LAGLGLLIMLLALL 190 (399)
T ss_pred HHHHHccc------------HHHHHHHHHHHHHH
Confidence 77877543 56666655544433
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=98.23 E-value=3.5e-06 Score=92.73 Aligned_cols=146 Identities=18% Similarity=0.190 Sum_probs=108.6
Q ss_pred hhHHHhhcCCC---ccchhHHHHHHHHHHHHhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHhc-CcchHHH
Q 008482 373 ISQIGGSLGYS---SFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIASG-LPGALYA 448 (564)
Q Consensus 373 ~~~i~~~~g~~---~~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~R~~~l~~~~~l~~i~~ll~~~~-~~~~l~~ 448 (564)
..++.++.+.+ +.+.+...+++.++..+|.+++|+++||++|| ..+.+..++.+++.++.... ....+++
T Consensus 112 ~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr------~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 185 (505)
T TIGR00898 112 SSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRK------KVLLLSTLVTAVSGVLTAFSPNYTVFLV 185 (505)
T ss_pred cccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccch------HHHHHHHHHHHHHHHHHHHcccHHHHHH
Confidence 45566777877 66788999999999999999999999999643 34455555555555544332 3334666
Q ss_pred HHHHHHhhhccccchhHHHHHHhhccCchhhhhhhHhhhhhhHHHhhhhhhhhhhhhcccCCCCccccCCcccHHHHHHH
Q 008482 449 GSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSFFIM 528 (564)
Q Consensus 449 ~~~l~G~~~G~~~~~~P~ivse~FG~k~fg~nyg~~~~a~~iG~~lf~~~l~g~iyD~~~~~~~~~C~G~~Cy~~af~i~ 528 (564)
.-.+.|++.|+.+.+...+++|++..|+-+...++...+..+|.. +++.+++.+.| ++..|.+.
T Consensus 186 ~r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~-~~~~~~~~~~~---------------wr~~~~~~ 249 (505)
T TIGR00898 186 FRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLV-LLPLVAYFIPD---------------WRWLQLAV 249 (505)
T ss_pred HHHHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHH-HHHHHHHHhhH---------------HHHHHHHH
Confidence 778999999999999999999999999888888888778888875 45544443332 58888888
Q ss_pred HHHHHHHHHHHH
Q 008482 529 GSATLCGSLAAF 540 (564)
Q Consensus 529 ~~l~v~a~vl~~ 540 (564)
++.+++..+..+
T Consensus 250 ~i~~~~~~~~~~ 261 (505)
T TIGR00898 250 SLPTFLFFLLSW 261 (505)
T ss_pred HHHHHHHHHHHH
Confidence 777776665543
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=98.22 E-value=9.6e-06 Score=86.42 Aligned_cols=150 Identities=13% Similarity=0.085 Sum_probs=107.5
Q ss_pred chhHHHhhcCCCccchhHHHHHHHHHHHHhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHh-cCcchHHHHH
Q 008482 372 NISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIAS-GLPGALYAGS 450 (564)
Q Consensus 372 n~~~i~~~~g~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~R~~~l~~~~~l~~i~~ll~~~-~~~~~l~~~~ 450 (564)
-+.++.++.|.++++.....+.+.+...++.+..|+++||++|| ..+.........+.+.... .+...+++.=
T Consensus 13 ~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R 86 (368)
T TIGR00903 13 VLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKR------WFLFGSLATFAAAAGRLLDPFNYEWLLACQ 86 (368)
T ss_pred hHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccch------HHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 46678888999988888999999999999999999999999643 2233333333333222222 2333566677
Q ss_pred HHHHhhhccccchhHHHHHHhhccCchhhhhhhHhhhhhhHHHhhhhhhhhhhhhcccCCCCccccCCcccHHHHHHHHH
Q 008482 451 ILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSFFIMGS 530 (564)
Q Consensus 451 ~l~G~~~G~~~~~~P~ivse~FG~k~fg~nyg~~~~a~~iG~~lf~~~l~g~iyD~~~~~~~~~C~G~~Cy~~af~i~~~ 530 (564)
++.|++.|...... ..++|+|-.|+-++..++...+..+|.. +++.+.+.+-+..+ .+..|++.++
T Consensus 87 ~l~G~g~~~~~~~~-~~~~~~~~~~~r~~a~~~~~~~~~lG~~-l~~~~~~~l~~~~g------------Wr~~f~~~~~ 152 (368)
T TIGR00903 87 LLAALGQPFLLNAF-APAASQIREERRDLVISLLSFAMYLGII-FALAAGLKIYTAGG------------LQLLIIPIAA 152 (368)
T ss_pred HHHHhHhHHHHHHH-HHHHHHcCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHccc------------hHHHHHHHHH
Confidence 88899988654333 4458999899999999999999999885 56767777766543 6899998877
Q ss_pred HHHHHHHHHHH
Q 008482 531 ATLCGSLAAFG 541 (564)
Q Consensus 531 l~v~a~vl~~~ 541 (564)
+.++..++..+
T Consensus 153 l~~~~~~~~~~ 163 (368)
T TIGR00903 153 VAAAGIILVLA 163 (368)
T ss_pred HHHHHHHHHHH
Confidence 77766544443
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=98.20 E-value=4.5e-06 Score=91.01 Aligned_cols=143 Identities=14% Similarity=0.185 Sum_probs=107.9
Q ss_pred hcCCCccchhHHHHHHHHHHHHhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHH--Hh-cCcchHHHHHHHHHh
Q 008482 379 SLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLII--AS-GLPGALYAGSILVGV 455 (564)
Q Consensus 379 ~~g~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~R~~~l~~~~~l~~i~~ll~--~~-~~~~~l~~~~~l~G~ 455 (564)
+.+.++.+.+...+.+.+...++.+..|+++||+++|+ .+....++.+++.++. .. .....+++.-++.|+
T Consensus 70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~------~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~ 143 (465)
T TIGR00894 70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKW------SIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGL 143 (465)
T ss_pred CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcch------hhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHH
Confidence 45677777788999999999999999999999996543 3444444444444332 21 122346667789999
Q ss_pred hhccccchhHHHHHHhhccCchhhhhhhHhhhhhhHHHhhhhhhhhhhhhcccCCCCccccCCcccHHHHHHHHHHHHHH
Q 008482 456 CYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSFFIMGSATLCG 535 (564)
Q Consensus 456 ~~G~~~~~~P~ivse~FG~k~fg~nyg~~~~a~~iG~~lf~~~l~g~iyD~~~~~~~~~C~G~~Cy~~af~i~~~l~v~a 535 (564)
+.|..+...+.+++|+|..|+-|+-.|+...+..+|.. +++.+.+.+.|...+ ++..|++..+..++.
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~-i~~~l~~~l~~~~~g-----------w~~~f~i~~~~~~~~ 211 (465)
T TIGR00894 144 AQGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTF-IFLPISGWLCESWGG-----------WPMIFYVFGIVGCAW 211 (465)
T ss_pred hcccchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhccCC-----------CCeehhhhhHHHHHH
Confidence 99999999999999999999999999999988888885 577788888886423 688888887766555
Q ss_pred HHHH
Q 008482 536 SLAA 539 (564)
Q Consensus 536 ~vl~ 539 (564)
.++.
T Consensus 212 ~~~~ 215 (465)
T TIGR00894 212 SLLW 215 (465)
T ss_pred HHHH
Confidence 4333
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.15 E-value=9.2e-06 Score=86.35 Aligned_cols=149 Identities=11% Similarity=0.054 Sum_probs=100.4
Q ss_pred heecchhHHHhhcCCCccchhHHHHHHHHHHHHhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHh-cCcchH
Q 008482 368 ATVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIAS-GLPGAL 446 (564)
Q Consensus 368 ~~i~n~~~i~~~~g~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~R~~~l~~~~~l~~i~~ll~~~-~~~~~l 446 (564)
+++.-++.+.++.|.+..+.+..+++.++...++.+++|.++||.+|+....|.. .+...+..+ .+... +....+
T Consensus 22 ~~~p~l~~~l~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~--~~~~~~~~~--~~~~~~~~~~~l 97 (382)
T PRK11128 22 VFLPFWSVWLKGQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLL--ALLTLLFAV--AFWFGAHSFWLL 97 (382)
T ss_pred HHhhhHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHH--HHHHHHHHH--HHHHhcccHHHH
Confidence 3344567788999999999999999999999999999999999997643222221 111111111 11111 222234
Q ss_pred HHHHHHHHhhhccccchhHHHHHHhhccCchhhhhhhHhhhhhhHHHhhhhhhhhhhhhcccCCCCccccCCcccHHHHH
Q 008482 447 YAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSFF 526 (564)
Q Consensus 447 ~~~~~l~G~~~G~~~~~~P~ivse~FG~k~fg~nyg~~~~a~~iG~~lf~~~l~g~iyD~~~~~~~~~C~G~~Cy~~af~ 526 (564)
++...+.|++.+.......+++.++ .|+.++.+|....+..+|. .+++.+.|.++|..+ ++..|+
T Consensus 98 ~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~-~igp~lgg~l~~~~g------------~~~~f~ 162 (382)
T PRK11128 98 FVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAF-VIGSALTGKLVSWFG------------EQAILW 162 (382)
T ss_pred HHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHH-HHHHHHHHHHHHHcC------------hhHHHH
Confidence 5566677888888888777777765 4566777777776666665 356778999999765 688887
Q ss_pred HHHHHHHHH
Q 008482 527 IMGSATLCG 535 (564)
Q Consensus 527 i~~~l~v~a 535 (564)
+.++..++.
T Consensus 163 ~~~~~~~~~ 171 (382)
T PRK11128 163 ILTAGVASM 171 (382)
T ss_pred HHHHHHHHH
Confidence 766544433
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.11 E-value=2e-05 Score=95.37 Aligned_cols=155 Identities=14% Similarity=0.057 Sum_probs=107.3
Q ss_pred HHhhcHHHHHHHHHHHhhhhchhheecchhHHH-hhcCCCc--cchhHHHHHHHHHHHHhhhhhhhhhhhhhhcccCchh
Q 008482 345 QAICTLEFWILSFAMACGMGSGLATVNNISQIG-GSLGYSS--FETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARP 421 (564)
Q Consensus 345 ~~l~t~~Fwll~~~~~~~~g~gl~~i~n~~~i~-~~~g~~~--~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~R~ 421 (564)
+.+++.+|+.++++.++......++..-+.+.. .+.+.+. ...+...+++.+...++.+.+|+++||+++|
T Consensus 4 ~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk------ 77 (1146)
T PRK08633 4 NLLKIIGFLPLLLTQFLNAFNDLGHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKN------ 77 (1146)
T ss_pred chhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHH------
Confidence 567888999999888886544433322232322 3334332 2246677888888999999999999999653
Q ss_pred HHHHHHHHHHHHHHHH---H-HhcCcchHHHHHHHHHhhhccccchhHHHHHHhhccCchhhhhhhHhhhhhhHHHhhhh
Q 008482 422 LFMVITLAAMSIGHLI---I-ASGLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSV 497 (564)
Q Consensus 422 ~~l~~~~~l~~i~~ll---~-~~~~~~~l~~~~~l~G~~~G~~~~~~P~ivse~FG~k~fg~nyg~~~~a~~iG~~lf~~ 497 (564)
..+....++.++..++ . .......+++.-++.|++.|.......++++|++..++.++..|+...+..+|.. +++
T Consensus 78 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~-lg~ 156 (1146)
T PRK08633 78 RVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAIL-AGT 156 (1146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHH-HHH
Confidence 3333333322222211 1 1223335677778899999999999999999999999999999999988888874 677
Q ss_pred hhhhhhhhc
Q 008482 498 RVVGYIYDR 506 (564)
Q Consensus 498 ~l~g~iyD~ 506 (564)
.+.|.+.+.
T Consensus 157 ~l~~~l~~~ 165 (1146)
T PRK08633 157 ALFSFLFES 165 (1146)
T ss_pred HHHHHHHHh
Confidence 788888775
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.09 E-value=8.3e-05 Score=79.99 Aligned_cols=161 Identities=17% Similarity=0.128 Sum_probs=98.8
Q ss_pred ecchhHHHhhcCCCccchhHH--------HHHHHHHHHH-hhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHh
Q 008482 370 VNNISQIGGSLGYSSFETSSL--------ISLWSIWNFL-GRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIAS 440 (564)
Q Consensus 370 i~n~~~i~~~~g~~~~~aa~~--------Vsl~si~n~~-GRl~~G~lsD~l~~~~~~~R~~~l~~~~~l~~i~~ll~~~ 440 (564)
--|.+.|.+++|..+.++..+ -.++.++..+ |=.+..+++|++ +|.++...-++++.+.++.++.
T Consensus 324 nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~i------GRk~iq~~GF~~~~i~~~~~~~ 397 (538)
T KOG0252|consen 324 NLFQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDII------GRKYIQLMGFFIMTIFFFVIAG 397 (538)
T ss_pred ccHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehh------hhHHHHHhhHHHHHHHHHHHcC
Confidence 346788999888877665541 1234444443 777788899999 5667777778888877766652
Q ss_pred c------Ccch--HHHH-HHHHHhhhccccchhHHHHHHhhccCchhhhhhhHhhhhhhHHHhhhhhhhhhhhhcccCCC
Q 008482 441 G------LPGA--LYAG-SILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASGE 511 (564)
Q Consensus 441 ~------~~~~--l~~~-~~l~G~~~G~~~~~~P~ivse~FG~k~fg~nyg~~~~a~~iG~~lf~~~l~g~iyD~~~~~~ 511 (564)
. ..+. +|.. -.+.-++=++..- .+-+|.|-.|-=|+-||+-....-.|+++ +...+..+-|++ +-
T Consensus 398 ~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttf---ivpaE~FParvR~t~hGIsAA~GK~GAiv-g~~~F~~~t~~~--yp 471 (538)
T KOG0252|consen 398 PYNQLENTIGFVVLYSLTFFFGNFGPNATTF---IVPAEIFPARVRSTCHGISAASGKAGAIV-GAFGFLYLTDHN--YP 471 (538)
T ss_pred CcccccccCceeehHHHHHHHHhcCCCceeE---EeehhhchHHHhhhhhhHHHHhccchHHH-HHHHhhHhhhcc--CC
Confidence 1 1111 2222 2222333333333 34479999999999999987655555543 332333333322 10
Q ss_pred CccccCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 008482 512 GNKCTGTHCFMLSFFIMGSATLCGSLAAFGLFLRTKR 548 (564)
Q Consensus 512 ~~~C~G~~Cy~~af~i~~~l~v~a~vl~~~l~~r~~~ 548 (564)
=..-++.+|++..+++.++.+..+++- .+|+
T Consensus 472 -----~~~g~~~v~~i~~~~~~~gi~~T~l~p-Etk~ 502 (538)
T KOG0252|consen 472 -----PNIGVRNVFIILAGCMLLGILFTLLIP-ETKG 502 (538)
T ss_pred -----ccccchHHHHHHHHHHHHhHheeEEee-cccc
Confidence 001279999999999999997777665 5655
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=98.07 E-value=5.2e-05 Score=79.31 Aligned_cols=153 Identities=10% Similarity=-0.051 Sum_probs=96.9
Q ss_pred cchhHHH-hhcCCCccchhHHHHHHHHHHHHhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHh-cCcchHHH
Q 008482 371 NNISQIG-GSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIAS-GLPGALYA 448 (564)
Q Consensus 371 ~n~~~i~-~~~g~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~R~~~l~~~~~l~~i~~ll~~~-~~~~~l~~ 448 (564)
.-++... ++.|.++.+.+..+++..+...+....+|.++||+++|+ ..+.....+..++.++... .+...+++
T Consensus 18 ~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 92 (375)
T TIGR00899 18 PTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRK-----GLILFCCLLAALACLLFAWNRNYFLLLV 92 (375)
T ss_pred hHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCch-----HHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 3344444 568999888899999999999999999999999997532 2233333333334333332 22223555
Q ss_pred HHHHHHhhhccccchhHHHHHHhhccCchh--hhhhhHhhhhhhHHHhhhhhhhhhhhhcccCCCCccccCCcccHHHHH
Q 008482 449 GSILVGVCYGSQWSLMPTIASEIFGVLQMG--TIFNTITIANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSFF 526 (564)
Q Consensus 449 ~~~l~G~~~G~~~~~~P~ivse~FG~k~fg--~nyg~~~~a~~iG~~lf~~~l~g~iyD~~~~~~~~~C~G~~Cy~~af~ 526 (564)
...+.|...+........++.|....+.-+ ..++....+..+|.. .++.+.+.+.|..+ ++..|+
T Consensus 93 ~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-ig~~~~~~l~~~~~------------~~~~f~ 159 (375)
T TIGR00899 93 LGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWV-IGPPLAFWLALGFG------------FTVMFL 159 (375)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHH-HhhhHHHHHHHhcc------------cHHHHH
Confidence 556667666666555556677776433222 225666555566663 46667888887644 689999
Q ss_pred HHHHHHHHHHHHHHH
Q 008482 527 IMGSATLCGSLAAFG 541 (564)
Q Consensus 527 i~~~l~v~a~vl~~~ 541 (564)
+.+..+++..++.+.
T Consensus 160 ~~~~~~~~~~~~~~~ 174 (375)
T TIGR00899 160 TAALAFVLCGVLVWL 174 (375)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888776666545443
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=98.06 E-value=5.2e-05 Score=83.84 Aligned_cols=112 Identities=18% Similarity=0.130 Sum_probs=83.1
Q ss_pred ccchhHHHHHHHHHHHHhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHhc-C------cchHHHHHHHHHhh
Q 008482 384 SFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIASG-L------PGALYAGSILVGVC 456 (564)
Q Consensus 384 ~~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~R~~~l~~~~~l~~i~~ll~~~~-~------~~~l~~~~~l~G~~ 456 (564)
+.+.+...+...++..+|.+++|+++||++| ...+.+..++..++.++.... . ...+++.-++.|++
T Consensus 55 ~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Gr------r~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~ 128 (502)
T TIGR00887 55 SSVSAAVNGSASIGTLAGQLFFGWLADKLGR------KRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVG 128 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc------HHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHH
Confidence 3445688999999999999999999999964 334455555555544433221 1 12466677899999
Q ss_pred hccccchhHHHHHHhhccCchhhhhhhHhhhhhhHHHhhhhhhhhh
Q 008482 457 YGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGY 502 (564)
Q Consensus 457 ~G~~~~~~P~ivse~FG~k~fg~nyg~~~~a~~iG~~lf~~~l~g~ 502 (564)
.|+.+...|.+++|.|..|+-|...++......+|.. ++..+...
T Consensus 129 ~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~-~g~~~~~~ 173 (502)
T TIGR00887 129 IGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGIL-AGAIVALI 173 (502)
T ss_pred HhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 9999999999999999999999999998877777764 45444443
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=98.05 E-value=7.3e-05 Score=79.53 Aligned_cols=161 Identities=11% Similarity=0.017 Sum_probs=105.2
Q ss_pred HHHHHHHHhhhhchhheecchhHHHhhcCCCccchhHHHHHHHHHHHHhhhhhhhhhhhhhhcccCchhHHHHHHHHHHH
Q 008482 353 WILSFAMACGMGSGLATVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMS 432 (564)
Q Consensus 353 wll~~~~~~~~g~gl~~i~n~~~i~~~~g~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~R~~~l~~~~~l~~ 432 (564)
|.+.+.+++--.+--+++.-++.+.++.|.+..+....+++..+...++.+++|.++||.+|+.. .|. .+.....+..
T Consensus 7 ~~l~~~~~~~~~~~~~~~p~l~~~l~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~-~~~-~~~~~~~l~~ 84 (382)
T TIGR00902 7 RWLALGFFGYFCAYGIFLPFFPAWLKGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIII-ALR-LLALASAIFA 84 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHH-HHH-HHHHHHHHHH
Confidence 33334343333332344555888899999999999999999999999999999999999864321 111 1111111111
Q ss_pred HHHHHHHhcCcchHHHHHHHHHhhhccccchhHHHHHHhhccCchhhhhhhHhhhhhhHHHhhhhhhhhhhhhcccCCCC
Q 008482 433 IGHLIIASGLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASGEG 512 (564)
Q Consensus 433 i~~ll~~~~~~~~l~~~~~l~G~~~G~~~~~~P~ivse~FG~k~fg~nyg~~~~a~~iG~~lf~~~l~g~iyD~~~~~~~ 512 (564)
+.. ....++...+++.-.+.|..++......-+++.+. .|+.+++||.+..+..+|.. +++.+.|.+.|..+
T Consensus 85 ~~~-~~~~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~-~g~~l~g~l~~~~g---- 156 (382)
T TIGR00902 85 AAF-SAGAHNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFI-IGSALFGGLIGMFD---- 156 (382)
T ss_pred HHH-HHhhhhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHH-HHHHHHHHHHHHcC----
Confidence 111 11122233455566667888888777777776654 57789999999888888874 57778999998865
Q ss_pred ccccCCcccHHHHHHHHHH
Q 008482 513 NKCTGTHCFMLSFFIMGSA 531 (564)
Q Consensus 513 ~~C~G~~Cy~~af~i~~~l 531 (564)
++..|.+...+
T Consensus 157 --------~~~~f~~~~~~ 167 (382)
T TIGR00902 157 --------EQNILAILTAG 167 (382)
T ss_pred --------hhHHHHHHHHH
Confidence 46677766544
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=98.05 E-value=1.4e-05 Score=91.23 Aligned_cols=127 Identities=13% Similarity=0.153 Sum_probs=99.3
Q ss_pred hhHHHhhcCCCccchhHHHHHHHHHHHHhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHhc-----------
Q 008482 373 ISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIASG----------- 441 (564)
Q Consensus 373 ~~~i~~~~g~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~R~~~l~~~~~l~~i~~ll~~~~----------- 441 (564)
+.+|-+..++++.+...++|.+.+++.++.+..|++.||.+ |+.++.+..++++++.++++..
T Consensus 56 l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~------r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~ 129 (633)
T TIGR00805 56 LTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLH------RPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYST 129 (633)
T ss_pred chhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccC------cceEEEecHHHHHHHHHHHhChHHhcCCccccc
Confidence 34455567899888999999999999999999999999984 4445566666777776654321
Q ss_pred ---------------------------------------C-c-chHHHHHHHHHhhhccccchhHHHHHHhhccCchhhh
Q 008482 442 ---------------------------------------L-P-GALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTI 480 (564)
Q Consensus 442 ---------------------------------------~-~-~~l~~~~~l~G~~~G~~~~~~P~ivse~FG~k~fg~n 480 (564)
. . ..++++=++.|++.|..+.+.++++.|.+..|+-+..
T Consensus 130 ~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~ 209 (633)
T TIGR00805 130 TVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLY 209 (633)
T ss_pred cccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHH
Confidence 0 0 1245677999999999999999999999999999999
Q ss_pred hhhHhhhhhhHHHhhhhhhhhhhhhc
Q 008482 481 FNTITIANPVGSYIFSVRVVGYIYDR 506 (564)
Q Consensus 481 yg~~~~a~~iG~~lf~~~l~g~iyD~ 506 (564)
.|+...+..+|+. +++.+.|.+.+.
T Consensus 210 ~~i~~~~~~iG~~-lG~llgg~l~~~ 234 (633)
T TIGR00805 210 IGILESIAVFGPA-FGYLLGSFCLQI 234 (633)
T ss_pred HHHHHHHHHhhhH-HHHHHHHHHHhc
Confidence 9999888888884 677777766543
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.00 E-value=6.3e-05 Score=91.40 Aligned_cols=182 Identities=12% Similarity=0.039 Sum_probs=116.2
Q ss_pred HHHhhcHHHHHHHHHHHhhhhchhheecchhHHHh-hcC----CCc-cchhHHHHHHHHHHHHhhhhhhhhhhhhhhccc
Q 008482 344 LQAICTLEFWILSFAMACGMGSGLATVNNISQIGG-SLG----YSS-FETSSLISLWSIWNFLGRFGAGYVSDYFLHVKE 417 (564)
Q Consensus 344 ~~~l~t~~Fwll~~~~~~~~g~gl~~i~n~~~i~~-~~g----~~~-~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~ 417 (564)
++++++++|+.+|+..++....-.+.-..+..+.. .+. .+. ...++..+++.+...+.-+++|+++||+++|+-
T Consensus 5 ~~l~~~~~f~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~ 84 (1140)
T PRK06814 5 LYLMKSRRFAPLFWTQFFGAFNDNFLKNALVILILYGLSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADKYDKAKL 84 (1140)
T ss_pred hhhhhccccHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHH
Confidence 45788999999988877765432222222222221 221 111 123455566777778889999999999975431
Q ss_pred CchhHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHhhhccccchhHHHHHHhhccCchhhhhhhHhhhhhhHHHhhhh
Q 008482 418 WARPLFMVITLAAMSIGHLIIASGLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSV 497 (564)
Q Consensus 418 ~~R~~~l~~~~~l~~i~~ll~~~~~~~~l~~~~~l~G~~~G~~~~~~P~ivse~FG~k~fg~nyg~~~~a~~iG~~lf~~ 497 (564)
. + .......+...++.+.+...+...++++.++.|++.+..+...-+++.|+|..++.+...|+...+..+|.. +++
T Consensus 85 ~-~-~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~-igp 161 (1140)
T PRK06814 85 A-K-ILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAIL-LGT 161 (1140)
T ss_pred H-H-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHH-HHH
Confidence 0 0 011111111122222222234446888889999999999999999999999999999999999998888885 688
Q ss_pred hhhhhhhhcccCCCCccccCCcccHHHHHHHHHHHHHHHHHHH
Q 008482 498 RVVGYIYDREASGEGNKCTGTHCFMLSFFIMGSATLCGSLAAF 540 (564)
Q Consensus 498 ~l~g~iyD~~~~~~~~~C~G~~Cy~~af~i~~~l~v~a~vl~~ 540 (564)
.+.|.+.+..+ .+..|.+.....++++++.+
T Consensus 162 ~l~g~l~~~~~------------~~~~~~~~~~~~~~~~~~~~ 192 (1140)
T PRK06814 162 IIGGLATISGN------------FVILVALLMGIAVLGWLASL 192 (1140)
T ss_pred HHHHHHHhccc------------cHHHHHHHHHHHHHHHHHHh
Confidence 88999988654 47777444444444443333
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=97.98 E-value=8.4e-05 Score=81.20 Aligned_cols=159 Identities=11% Similarity=0.065 Sum_probs=120.9
Q ss_pred hHHHhhcCCCccc-hhHHHHHHHHHHHHhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHhc-CcchHHHHHH
Q 008482 374 SQIGGSLGYSSFE-TSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIASG-LPGALYAGSI 451 (564)
Q Consensus 374 ~~i~~~~g~~~~~-aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~R~~~l~~~~~l~~i~~ll~~~~-~~~~l~~~~~ 451 (564)
..+.++.|+++++ .....+.+...-.+..+..|+++||++. |+. +.+..+.-++..+++... +...+.+.=+
T Consensus 50 p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~-----K~v-L~l~~l~Wsl~t~L~~fa~Sl~~L~i~R~ 123 (511)
T TIGR00806 50 PYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRY-----KPV-LVLQALSFVCVWLLLLLGTSVWHMQLMEV 123 (511)
T ss_pred HHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCc-----hHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455678999888 8899999999999999999999999973 333 333344434443333322 3335666778
Q ss_pred HHHhhhccccchhHHHHHHhhccCchhhhhhhHhhhhhhHHHhhhhhhhhhhhhcccCCCCccccCCcccHHHHHHHHHH
Q 008482 452 LVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSFFIMGSA 531 (564)
Q Consensus 452 l~G~~~G~~~~~~P~ivse~FG~k~fg~nyg~~~~a~~iG~~lf~~~l~g~iyD~~~~~~~~~C~G~~Cy~~af~i~~~l 531 (564)
+.|++.|..+ ..-..++.+|-.|++++-.++...+..+|.. +++++.+.+- .. |-+-|..-.+|+.+.
T Consensus 124 llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~-Ia~~L~qll~-s~---------gWr~y~~Ln~Isl~s 191 (511)
T TIGR00806 124 FYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVF-LSSVLGQLLV-TL---------GWISYSTLNIISLVF 191 (511)
T ss_pred HHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH-hc---------CchhHHHHHHHHHHH
Confidence 9999999999 9999999999999999999999988888885 4665666632 22 234488888999999
Q ss_pred HHHHHHHHHHHHHhhhHHH
Q 008482 532 TLCGSLAAFGLFLRTKRFY 550 (564)
Q Consensus 532 ~v~a~vl~~~l~~r~~~~~ 550 (564)
..+++++++++-..+|..|
T Consensus 192 ~~~a~~~a~~LP~~~~sl~ 210 (511)
T TIGR00806 192 MTFSVFLALFLKRPKRSLF 210 (511)
T ss_pred HHHHHHHHHhCCCCchhhh
Confidence 9999999999886666533
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.96 E-value=4.7e-05 Score=81.23 Aligned_cols=151 Identities=17% Similarity=0.162 Sum_probs=116.9
Q ss_pred chhHHHhhcCCCccchhHHHHHHHHHHHHhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHhcC-cchHHHHH
Q 008482 372 NISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIASGL-PGALYAGS 450 (564)
Q Consensus 372 n~~~i~~~~g~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~R~~~l~~~~~l~~i~~ll~~~~~-~~~l~~~~ 450 (564)
-+..+.++.|++.++.+.+-|.+++.=.+++.++|.+|||...| .++.+.+++.++..+++.+.. -..+.+.-
T Consensus 51 a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr------~fm~~gLilsai~nil~Gfs~s~~~~~~l~ 124 (448)
T COG2271 51 AMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPR------YFMAFGLILSAIVNILFGFSPSLFLFAVLW 124 (448)
T ss_pred ccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCc------eeehHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 34567778889999999999999999999999999999998533 346677777777777765433 22355556
Q ss_pred HHHHhhhccccchhHHHHHHhhccCchhhhhhhHhhhhhhHHHhhhhhhh--hhhhhcccCCCCccccCCcccHHHHHHH
Q 008482 451 ILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVV--GYIYDREASGEGNKCTGTHCFMLSFFIM 528 (564)
Q Consensus 451 ~l~G~~~G~~~~~~P~ivse~FG~k~fg~nyg~~~~a~~iG~~lf~~~l~--g~iyD~~~~~~~~~C~G~~Cy~~af~i~ 528 (564)
.+.|+--|..|.-.--++..+|..|.=|+.|++-.++-.+|+-+. +.+. |.+-++.+ .+.+|++-
T Consensus 125 ~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~-~~~~~la~~~~~~~------------w~~~f~~p 191 (448)
T COG2271 125 VLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALA-PLVALLAFFAFHGG------------WRAAFYFP 191 (448)
T ss_pred HHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchH-HHHHHHHHHHhccc------------hhHHHHHH
Confidence 788999999999999999999999999999999888777777543 3356 77777653 69999998
Q ss_pred HHHHHHHHHHHHH
Q 008482 529 GSATLCGSLAAFG 541 (564)
Q Consensus 529 ~~l~v~a~vl~~~ 541 (564)
++++++..+..++
T Consensus 192 giiaiival~~~~ 204 (448)
T COG2271 192 GIIAIIVALILLF 204 (448)
T ss_pred HHHHHHHHHHHHH
Confidence 8777655434433
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.0002 Score=79.30 Aligned_cols=156 Identities=12% Similarity=0.068 Sum_probs=106.0
Q ss_pred cchhHHHhhcCCCccchhHHHHHHHHHHHHhhhhhhhhhhhhhh-cccCchhHHHHHHHHHHHHHHHHHHhcCc----ch
Q 008482 371 NNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLH-VKEWARPLFMVITLAAMSIGHLIIASGLP----GA 445 (564)
Q Consensus 371 ~n~~~i~~~~g~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~-~~~~~R~~~l~~~~~l~~i~~ll~~~~~~----~~ 445 (564)
..++...++.|.+.++.+.. ++++.. ..++++||.++||+.+ |++ +|+.++....+..+++..+++...| ..
T Consensus 33 ~~l~~~l~~~g~~~~~ig~~-~~~~~~-~~~~~l~gpl~Dr~~~~~~G-rrr~~ll~~~i~~~~~~~~~a~~~~~~~l~~ 109 (491)
T PRK11010 33 GTLQAWMTVENIDLKTIGFF-SLVGQA-YVFKFLWSPLMDRYTPPFLG-RRRGWLLATQLLLLVAIAAMGFLEPGTQLRW 109 (491)
T ss_pred HHHHHHHHhCCCCHHHHHHH-HHHHHH-HHHHHHHHHHHHcccccCCC-CchHHHHHHHHHHHHHHHHHHHcCCcchHHH
Confidence 34555666778776554443 444443 2689999999999832 222 3443454555555555443332211 13
Q ss_pred HHHHHHHHHhhhccccchhHHHHHHhhccCchhhhhhhHhhhhhhHHHhhhhhhhhhhhhcccCCCCccccCCcccHHHH
Q 008482 446 LYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSF 525 (564)
Q Consensus 446 l~~~~~l~G~~~G~~~~~~P~ivse~FG~k~fg~nyg~~~~a~~iG~~lf~~~l~g~iyD~~~~~~~~~C~G~~Cy~~af 525 (564)
+.+..++.|++.+..-....+++.|+|-.|+.|+.-++...+..+|.. +++.+.+.+.|...+ ++..|
T Consensus 110 l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~l-lg~~l~~~l~~~~~G-----------Wr~~f 177 (491)
T PRK11010 110 LAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAML-VSGGLALWLADRYLG-----------WQGMY 177 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHH-HHHHHHHHHHhcccC-----------HHHHH
Confidence 555667889999999899999999999999999988998888888885 566677888874333 79999
Q ss_pred HHHHHHHHHHHHHHHH
Q 008482 526 FIMGSATLCGSLAAFG 541 (564)
Q Consensus 526 ~i~~~l~v~a~vl~~~ 541 (564)
.+.+++.++..+..++
T Consensus 178 ~i~a~l~ll~~l~~~~ 193 (491)
T PRK11010 178 WLMAALLIPCIIATLL 193 (491)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9988877776654443
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.0048 Score=67.56 Aligned_cols=144 Identities=15% Similarity=0.120 Sum_probs=82.8
Q ss_pred HHHHhhcHHHHHHHHHHHhhhhchhheecchhHHHhh--cCCCccchhHHHHHHHHHHHHhhhhhhhhhhhhhhcccCch
Q 008482 343 LLQAICTLEFWILSFAMACGMGSGLATVNNISQIGGS--LGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWAR 420 (564)
Q Consensus 343 ~~~~l~t~~Fwll~~~~~~~~g~gl~~i~n~~~i~~~--~g~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~R 420 (564)
....++++.|-++.+++.+. ..+.-+.+..-..... +|.++..+.......+.....+-+++..+.+|++||+
T Consensus 229 ~~~~~~Nrp~~~~l~~~l~~-~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~---- 303 (467)
T COG2211 229 FLLIFKNRPLLLLLLMNLLL-FIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKK---- 303 (467)
T ss_pred HHHHHccchHHHHHHHHHHH-HHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHH----
Confidence 34677888887777755544 3332222221111122 3444333333444444444555888999998886543
Q ss_pred hHHHHHHHHHHHHHHHHHHhcC---cchHHHHHHHHHhhhccccchhHHHHHHh-------hccCchhhhhhhHh----h
Q 008482 421 PLFMVITLAAMSIGHLIIASGL---PGALYAGSILVGVCYGSQWSLMPTIASEI-------FGVLQMGTIFNTIT----I 486 (564)
Q Consensus 421 ~~~l~~~~~l~~i~~ll~~~~~---~~~l~~~~~l~G~~~G~~~~~~P~ivse~-------FG~k~fg~nyg~~~----~ 486 (564)
......++.+++.+++.... ...+++..++.+++.+....+..++++|. =|.|.=|..|+.+. +
T Consensus 304 --~~~~~~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~ 381 (467)
T COG2211 304 --LFLIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKL 381 (467)
T ss_pred --HHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHH
Confidence 34444555555554433222 22344455888888998888888888875 25677788888775 4
Q ss_pred hhhhHHH
Q 008482 487 ANPVGSY 493 (564)
Q Consensus 487 a~~iG~~ 493 (564)
+.+++..
T Consensus 382 g~ala~~ 388 (467)
T COG2211 382 GLALAGF 388 (467)
T ss_pred HHHHHHH
Confidence 4555554
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.0001 Score=81.22 Aligned_cols=174 Identities=13% Similarity=0.068 Sum_probs=110.9
Q ss_pred heecchhHHHhhcCCCccchhHHHHHHHHHHHHhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHhcCc----
Q 008482 368 ATVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIASGLP---- 443 (564)
Q Consensus 368 ~~i~n~~~i~~~~g~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~R~~~l~~~~~l~~i~~ll~~~~~~---- 443 (564)
....++.++.+.+|.++........+..+...+...+.|++|||...|++-+|++ +.......+++++++.....
T Consensus 22 l~~~~l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~-il~g~~~~~~~l~ll~~~~~~~~~ 100 (477)
T TIGR01301 22 LQLSLLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPF-IAAGAALVAFAVILIGFAADIGHL 100 (477)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHH-HHHHHHHHHHHHHHHHhCchhhhh
Confidence 4456788899999999988889999999999999999999999865555523343 33333444444444322111
Q ss_pred --------------chHHHHHHHHHhhhccccchhHHHHHHhhccCch--hhhhhhHhhhhhhHHHhhhhhhhhhh--hh
Q 008482 444 --------------GALYAGSILVGVCYGSQWSLMPTIASEIFGVLQM--GTIFNTITIANPVGSYIFSVRVVGYI--YD 505 (564)
Q Consensus 444 --------------~~l~~~~~l~G~~~G~~~~~~P~ivse~FG~k~f--g~nyg~~~~a~~iG~~lf~~~l~g~i--yD 505 (564)
..+.++..+..++......-+.++++|.+..++- +.-+++......+|.. ++..+.|.. ++
T Consensus 101 ~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~i-lg~~~g~~~~~~~ 179 (477)
T TIGR01301 101 FGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNV-LGYAAGAYSGLYK 179 (477)
T ss_pred ccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhHHH
Confidence 0122233445567777788889999999987643 4567777777777774 455444432 32
Q ss_pred cccCCCCcccc-CCcccHHHHHHHHHHHHHHHHHHHHHH
Q 008482 506 REASGEGNKCT-GTHCFMLSFFIMGSATLCGSLAAFGLF 543 (564)
Q Consensus 506 ~~~~~~~~~C~-G~~Cy~~af~i~~~l~v~a~vl~~~l~ 543 (564)
..+-..+..|. -..-++.+|++.+++.+++.+++.+..
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v 218 (477)
T TIGR01301 180 IFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAV 218 (477)
T ss_pred hcccccccccccccchHHHHHHHHHHHHHHHHHHHeeee
Confidence 21111112222 233478999998888888776665544
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00029 Score=75.25 Aligned_cols=173 Identities=10% Similarity=-0.032 Sum_probs=98.6
Q ss_pred cHHHHHHHHHHHhhhhchhheecchhHH-HhhcCCCccchhHHHHHHHHHH-HHhhhhhhhhhhhhhhcccCchhHHHHH
Q 008482 349 TLEFWILSFAMACGMGSGLATVNNISQI-GGSLGYSSFETSSLISLWSIWN-FLGRFGAGYVSDYFLHVKEWARPLFMVI 426 (564)
Q Consensus 349 t~~Fwll~~~~~~~~g~gl~~i~n~~~i-~~~~g~~~~~aa~~Vsl~si~n-~~GRl~~G~lsD~l~~~~~~~R~~~l~~ 426 (564)
+..-|.+++..++......++..-++.. .+++|.++++.+..++...+.. ..+.+..|+ +||+++|+ ..+..
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~-----~~~~~ 87 (393)
T PRK15011 14 DLTSTAFLIVAFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRK-----SLIVF 87 (393)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-Hhcccchh-----HHHHH
Confidence 4455666666555444434444555554 4578998888777777666644 466666676 89997533 22333
Q ss_pred HHHHHHHHHHHHHhcC-cchHHHHHHHHHhhhccccchhHHHHHHhhccCch--hhhhhhHhhhhhhHHHhhhhhhhhhh
Q 008482 427 TLAAMSIGHLIIASGL-PGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQM--GTIFNTITIANPVGSYIFSVRVVGYI 503 (564)
Q Consensus 427 ~~~l~~i~~ll~~~~~-~~~l~~~~~l~G~~~G~~~~~~P~ivse~FG~k~f--g~nyg~~~~a~~iG~~lf~~~l~g~i 503 (564)
..++.+++..+..... ...+.+...+.|...+........++.|....++- +...++...+..+|.. +++++.+.+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~-~g~~i~~~l 166 (393)
T PRK15011 88 CCLLGVLACTLFAWNRNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWV-IGPPLAYAL 166 (393)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHH-HhhHHHHHH
Confidence 3333344443333222 22233333334444444555555666665543321 2222566666777774 577789999
Q ss_pred hhcccCCCCccccCCcccHHHHHHHHHHHHHHHHHHH
Q 008482 504 YDREASGEGNKCTGTHCFMLSFFIMGSATLCGSLAAF 540 (564)
Q Consensus 504 yD~~~~~~~~~C~G~~Cy~~af~i~~~l~v~a~vl~~ 540 (564)
.|..+ ++.+|++.+.++++..++..
T Consensus 167 ~~~~g------------w~~~f~~~~~~~~~~~~~~~ 191 (393)
T PRK15011 167 AMGFS------------FTVMYLSAAVAFIVCGVMVW 191 (393)
T ss_pred HHhcC------------hHHHHHHHHHHHHHHHHHHH
Confidence 88654 69999988877776654443
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00023 Score=76.87 Aligned_cols=145 Identities=12% Similarity=0.060 Sum_probs=97.6
Q ss_pred HHHHHHHHHHhhhhchhhee-cchhHHHhhcCCCccchhHHHHHHHHHHHHhhhhhhhhhhhhhhcccCchhHHHHHHHH
Q 008482 351 EFWILSFAMACGMGSGLATV-NNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLA 429 (564)
Q Consensus 351 ~Fwll~~~~~~~~g~gl~~i-~n~~~i~~~~g~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~R~~~l~~~~~ 429 (564)
.|+++...+++- |....++ .-..++.++.|.++.+.+...+...+...++.+..|++.||+++ .+.+....+
T Consensus 4 ~~~~~~~~f~~~-G~~~~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~------r~~~~~g~~ 76 (410)
T TIGR00885 4 PFALITSLFALW-GFANDITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSY------KAGILLGLF 76 (410)
T ss_pred HHHHHHHHHHHH-HHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc------hHHHHHHHH
Confidence 456555444443 3333333 23445556789998888999999999999999999999999954 345666677
Q ss_pred HHHHHHHHHHh---c-CcchHHHHHHHHHhhhccccchhHHHHHHhhccCchhhhhhhHhhhhhhHHHhhhhhhhhhh
Q 008482 430 AMSIGHLIIAS---G-LPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYI 503 (564)
Q Consensus 430 l~~i~~ll~~~---~-~~~~l~~~~~l~G~~~G~~~~~~P~ivse~FG~k~fg~nyg~~~~a~~iG~~lf~~~l~g~i 503 (564)
+.+++.+++.. . ....+.+...+.|++.|.......+.+.+....|+.++.-++......+|.. +++.+.+.+
T Consensus 77 l~~~g~~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~-~g~~i~~~l 153 (410)
T TIGR00885 77 LYALGAFLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSI-IGMVVAQQL 153 (410)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 77777665432 1 2224566778899999999988888888887666677666665554545443 344444444
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00021 Score=74.79 Aligned_cols=161 Identities=16% Similarity=0.027 Sum_probs=104.5
Q ss_pred hhHHHhhcCCCccchhHHHHHHHHHHHHhhhhhhhhhhhhhh-cccCchhHHHHHHHHHHHHHHHHHHhcC--cc--hHH
Q 008482 373 ISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLH-VKEWARPLFMVITLAAMSIGHLIIASGL--PG--ALY 447 (564)
Q Consensus 373 ~~~i~~~~g~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~-~~~~~R~~~l~~~~~l~~i~~ll~~~~~--~~--~l~ 447 (564)
++.+.++.|.+.++.+... ...+...+ ++++|.++||+.. +++ +|+.++....++.++..+.+.... .. .++
T Consensus 11 ~~~~~~~~g~s~~~~g~~~-~~~~~~~~-~~~~g~~~Dr~~~~~~G-rr~~~l~~~~~~~~~~~~~l~~~~~~~~l~~l~ 87 (356)
T TIGR00901 11 LPYWLRSKNVSLKTIGFFS-LVGLPYSL-KFLWSPLVDTVYLPFFG-RRRSWLVLTQVLLLSLLLILSFLVPSTDLPLLA 87 (356)
T ss_pred HHHHHHHcCCCHHHHHHHH-HHHHHHHH-HHHHHHHHhcccCCCCC-ccHHHHHHHHHHHHHHHHHHHcCCcchhHHHHH
Confidence 5567788899987766654 33444444 9999999999953 333 333334444444444433333221 11 244
Q ss_pred HHHHHHHhhhccccchhHHHHHHhhccCchhhhhhhHhhhhhhHHHhhhhhhhhhhhhcccCCCCccccCCcccHHHHHH
Q 008482 448 AGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSFFI 527 (564)
Q Consensus 448 ~~~~l~G~~~G~~~~~~P~ivse~FG~k~fg~nyg~~~~a~~iG~~lf~~~l~g~iyD~~~~~~~~~C~G~~Cy~~af~i 527 (564)
...++.+++.+......-+++.|.+..|+-+..-|+...+..+|.. +++.+.+.+++..+..+ .....++..|.+
T Consensus 88 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~-~~~~l~~~l~~~~g~~~----~~~~~wr~~f~i 162 (356)
T TIGR00901 88 GLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGML-LSGSLALVLASPEFANT----GLITLWGYIFFW 162 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHH-HHHHHHHHHhhhccccc----ccccccHHHHHH
Confidence 4445667777777777788999999989999998998888888875 56667777776654211 124458999988
Q ss_pred HHHHHHHHHHHHHH
Q 008482 528 MGSATLCGSLAAFG 541 (564)
Q Consensus 528 ~~~l~v~a~vl~~~ 541 (564)
.+++..++.+..++
T Consensus 163 ~ai~~l~~~~~~~~ 176 (356)
T TIGR00901 163 TALLILPGLLVTLF 176 (356)
T ss_pred HHHHHHHHHHHHHH
Confidence 88777666544443
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00021 Score=76.54 Aligned_cols=159 Identities=14% Similarity=0.126 Sum_probs=105.2
Q ss_pred hchhheecc-hhHHHhhcCCCccchhHHHHHHHHHHHHhhhhhhhhhhhhhhcc-cCchhHHHHHHHHHHHHHHHHHHhc
Q 008482 364 GSGLATVNN-ISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVK-EWARPLFMVITLAAMSIGHLIIASG 441 (564)
Q Consensus 364 g~gl~~i~n-~~~i~~~~g~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~-~~~R~~~l~~~~~l~~i~~ll~~~~ 441 (564)
|...+++.. ++.+.++.|++.++.+...++... .+.+++||.++||+..+. + +|..++.+...+.++++.++...
T Consensus 12 ~~~~~~~~~~~~~~l~~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g-~rr~~l~~~~~~~~l~~~~l~~~ 88 (402)
T PRK11902 12 GLPLALTSGTLQAWMTVEGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLG-RRRGWLLLTQVGLAASIAAMAFC 88 (402)
T ss_pred hhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCC-cchhHHHHHHHHHHHHHHHHHhc
Confidence 333444333 445668899998887776555555 589999999999993211 1 23334555555555554443322
Q ss_pred Cc----chHHHHHHHHHhhhccccchhHHHHHHhhccCchhhhhhhHhhhhhhHHHhhhhhhhhhhhhcccCCCCccccC
Q 008482 442 LP----GALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASGEGNKCTG 517 (564)
Q Consensus 442 ~~----~~l~~~~~l~G~~~G~~~~~~P~ivse~FG~k~fg~nyg~~~~a~~iG~~lf~~~l~g~iyD~~~~~~~~~C~G 517 (564)
.+ ..+++..++.+++.........+++.|++-.|+-++.-++...+..+|.. +++.+.+.+.+...+
T Consensus 89 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i-~g~~l~~~l~~~~~g-------- 159 (402)
T PRK11902 89 PPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAML-VSGGLALWLADRVLG-------- 159 (402)
T ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHH-HHhHHHHHHHhcccC--------
Confidence 11 12444445667777778788899999999888788888888888888875 556678888875433
Q ss_pred CcccHHHHHHHHHHHHHHHH
Q 008482 518 THCFMLSFFIMGSATLCGSL 537 (564)
Q Consensus 518 ~~Cy~~af~i~~~l~v~a~v 537 (564)
.+..|.+.+++.++..+
T Consensus 160 ---w~~~f~i~a~~~l~~~l 176 (402)
T PRK11902 160 ---WGNTYLLMAGLMLAGAL 176 (402)
T ss_pred ---HHHHHHHHHHHHHHHHH
Confidence 58899888777666554
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00024 Score=74.12 Aligned_cols=127 Identities=20% Similarity=0.194 Sum_probs=82.3
Q ss_pred HHhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHhcCcc---------hHHHHHHHHHhhhccccchhHHHHH
Q 008482 399 FLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIASGLPG---------ALYAGSILVGVCYGSQWSLMPTIAS 469 (564)
Q Consensus 399 ~~GRl~~G~lsD~l~~~~~~~R~~~l~~~~~l~~i~~ll~~~~~~~---------~l~~~~~l~G~~~G~~~~~~P~ivs 469 (564)
.+|.++.|+++||+++ ...+.+..++..++.++....... .+++.-.+.|++.|..+...+.+++
T Consensus 49 ~i~~~~~G~l~dr~g~------r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~ 122 (394)
T TIGR00883 49 PLGAIVFGHFGDRIGR------KKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLA 122 (394)
T ss_pred hhHHHHhhhhhhhhhh------HHHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhh
Confidence 4688999999999964 334555666666665554432211 2555668889999999999999999
Q ss_pred HhhccCchhhhhhhHhhhhhhHHHhhhhhhhhhhhhcccCCCCccccCCcccHHHHHHHHHHHHHHH
Q 008482 470 EIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSFFIMGSATLCGS 536 (564)
Q Consensus 470 e~FG~k~fg~nyg~~~~a~~iG~~lf~~~l~g~iyD~~~~~~~~~C~G~~Cy~~af~i~~~l~v~a~ 536 (564)
|.+-.|+-+...++...+..+|.. +++.+.+.+.+.-+... ....-++..|++...+++++.
T Consensus 123 ~~~~~~~r~~~~~~~~~~~~~G~~-i~~~~~~~~~~~~~~~~----~~~~~w~~~~~~~~~~~~~~~ 184 (394)
T TIGR00883 123 EYAPPGKRGFYGSFQQVGAPVGLL-LAALTVLLLSYLLGDDA----LLEWGWRIPFLVSAVLVLIGL 184 (394)
T ss_pred hcCCcccchHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCHHH----hhccchHHHHHHHHHHHHHHH
Confidence 999999988888888777777775 34444443322100000 001126788887766655544
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00061 Score=75.20 Aligned_cols=96 Identities=19% Similarity=0.164 Sum_probs=71.8
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHhcCc-c--------hHHHHHHHHHhhhccccc
Q 008482 392 SLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIASGLP-G--------ALYAGSILVGVCYGSQWS 462 (564)
Q Consensus 392 sl~si~n~~GRl~~G~lsD~l~~~~~~~R~~~l~~~~~l~~i~~ll~~~~~~-~--------~l~~~~~l~G~~~G~~~~ 462 (564)
++.-++-.+|-+++|+++||++ |...+.+..++++++.++.+.... . .+.+.=++.|++.|+.+.
T Consensus 64 ~~~~l~~~ig~~~~G~l~Dr~G------rr~~l~~~~~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~ 137 (490)
T PRK10642 64 SVPFLIRPLGGLFFGMLGDKYG------RQKILAITIVIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYT 137 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc------cHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHH
Confidence 4455667889999999999995 445567777777777666543221 1 145566889999999999
Q ss_pred hhHHHHHHhhccCchhhhhhhHhhhhhhHHH
Q 008482 463 LMPTIASEIFGVLQMGTIFNTITIANPVGSY 493 (564)
Q Consensus 463 ~~P~ivse~FG~k~fg~nyg~~~~a~~iG~~ 493 (564)
....+++|+|..|+-|..-++...+..+|..
T Consensus 138 ~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~ 168 (490)
T PRK10642 138 GASIFVAEYSPDRKRGFMGSWLDFGSIAGFV 168 (490)
T ss_pred HHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 9999999999989888877777765555553
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00018 Score=63.23 Aligned_cols=91 Identities=21% Similarity=0.229 Sum_probs=69.5
Q ss_pred hhhcccCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHhhhcC-CCCcceeeee
Q 008482 87 RLTRLLGPWVVLLVGAIQCFAGYFLMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFP-TYSGTAVGIM 165 (564)
Q Consensus 87 ~~~~~~GP~~~~~iG~vl~~~Gy~~~~l~~~g~i~~~~~~~l~~~~~l~G~g~~~~~ta~l~t~~k~FP-~~RG~a~Gl~ 165 (564)
++.||+|+|.++.++.++..++....... .+++.+....++.|.+.+..+........+.+| ++|+.+.|+.
T Consensus 20 ~~~d~~g~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (141)
T TIGR00880 20 LLTDRFGRKPVLLVGLFIFVLSTAMFALS-------SNITVLIIARFLQGFGAAFALVAGAALIADIYPPEERGVALGLM 92 (141)
T ss_pred HHHhhcchhHHHHHHHHHHHHHHHHHHHh-------ccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhhhhHHHHHH
Confidence 34444569999999999999888875432 245666777888889888888887788889998 5699999999
Q ss_pred hhhhhhhHHHHHHHHHhhc
Q 008482 166 KGFVGLSGAILIQVYQTFF 184 (564)
Q Consensus 166 ~a~~GLsa~i~s~i~~~~f 184 (564)
.....++..+...+.....
T Consensus 93 ~~~~~~g~~~~~~~~~~~~ 111 (141)
T TIGR00880 93 SAGIALGPLLGPPLGGVLA 111 (141)
T ss_pred HHhHHHHHHHhHHhHHHHh
Confidence 9888888877665555443
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00027 Score=76.93 Aligned_cols=144 Identities=21% Similarity=0.318 Sum_probs=114.7
Q ss_pred hhcCCCccchhHHHHHHHHHHHHhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHhc---CcchHHHHHHHHH
Q 008482 378 GSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIASG---LPGALYAGSILVG 454 (564)
Q Consensus 378 ~~~g~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~R~~~l~~~~~l~~i~~ll~~~~---~~~~l~~~~~l~G 454 (564)
+.+|+++++|..+++.++-.--.--++.||++||+. ++..++.+..+++.+|++++... .+..++++.++++
T Consensus 54 ~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~L-----G~~~tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~ 128 (498)
T COG3104 54 DGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVL-----GTRRTIVLGAILMAIGHLVLAISSVSGPGGLYIGLALII 128 (498)
T ss_pred ccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhc-----chhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHH
Confidence 347799989999999999999999999999999995 56667888889999999887644 3567999999999
Q ss_pred hhhccccchhHHHHHHhhccCchhhh--hhhHhhhhhhHHHhhhhhhhhhhhhcccCCCCccccCCcccHHHHHHHHHHH
Q 008482 455 VCYGSQWSLMPTIASEIFGVLQMGTI--FNTITIANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSFFIMGSAT 532 (564)
Q Consensus 455 ~~~G~~~~~~P~ivse~FG~k~fg~n--yg~~~~a~~iG~~lf~~~l~g~iyD~~~~~~~~~C~G~~Cy~~af~i~~~l~ 532 (564)
+++|..=+-..+++.|.+..++--+- +++.+.+..+|++ +++.+.+++-+.. ||...|-+++.-.
T Consensus 129 iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl-~~p~i~~~~~~~~------------g~~~gF~~aavGm 195 (498)
T COG3104 129 VGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSL-IAPIITGLLAINY------------GWHVGFGLAAVGM 195 (498)
T ss_pred hccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHH-HHHHHHHHHHHhh------------CHHHHHHHHHHHH
Confidence 99999999999999999987654332 4556678888885 7888888888764 3788887666555
Q ss_pred HHHHHHH
Q 008482 533 LCGSLAA 539 (564)
Q Consensus 533 v~a~vl~ 539 (564)
.++++..
T Consensus 196 ~~gl~~f 202 (498)
T COG3104 196 IIGLVIF 202 (498)
T ss_pred HHHHHHH
Confidence 5555333
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.0016 Score=70.83 Aligned_cols=126 Identities=16% Similarity=0.156 Sum_probs=82.1
Q ss_pred HHHHHhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHhcCc-c--------hHHHHHHHHHhhhccccchhHH
Q 008482 396 IWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIASGLP-G--------ALYAGSILVGVCYGSQWSLMPT 466 (564)
Q Consensus 396 i~n~~GRl~~G~lsD~l~~~~~~~R~~~l~~~~~l~~i~~ll~~~~~~-~--------~l~~~~~l~G~~~G~~~~~~P~ 466 (564)
++..+|.++.|+++||++| ...+.+...+.+++.++...... . .+.+.=.+.|++.|+.+.....
T Consensus 75 ~~~~~g~~~~G~l~Dr~Gr------r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~ 148 (438)
T PRK09952 75 LFRPLGGVVFGHFGDRLGR------KRMLMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAAL 148 (438)
T ss_pred HHHhhHHHHHHHHHHhhcc------HHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHH
Confidence 3456777889999999954 44556666666766665543222 1 2555668899999999999999
Q ss_pred HHHHhhccCchhhhhhhHhhhhhhHHHhhhhhhhhhhhhcccCCCCccccCCcccHHHHHHHHHHH
Q 008482 467 IASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSFFIMGSAT 532 (564)
Q Consensus 467 ivse~FG~k~fg~nyg~~~~a~~iG~~lf~~~l~g~iyD~~~~~~~~~C~G~~Cy~~af~i~~~l~ 532 (564)
+++|.+..|+-|...+....+..+|.. ++..+.+.+...-+..+ ......+..|++.....
T Consensus 149 ~~~e~~p~~~rg~~~~~~~~g~~~G~~-l~~~~~~~l~~~~~~~~----~~~~gWr~~f~~~~~~~ 209 (438)
T PRK09952 149 LAVESAPKNKKAFYSSGVQVGYGVGLL-LSTGLVSLISMMTTDEQ----FLSWGWRIPFLFSIVLV 209 (438)
T ss_pred HHHHhCCCCCCcHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCHHH----hhccChHHHHHHHHHHH
Confidence 999999998888877777777777774 34434443332110000 00012678888765543
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00083 Score=72.75 Aligned_cols=95 Identities=19% Similarity=0.169 Sum_probs=66.4
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHhcC-c--------chHHHHHHHHHhhhccccc
Q 008482 392 SLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIASGL-P--------GALYAGSILVGVCYGSQWS 462 (564)
Q Consensus 392 sl~si~n~~GRl~~G~lsD~l~~~~~~~R~~~l~~~~~l~~i~~ll~~~~~-~--------~~l~~~~~l~G~~~G~~~~ 462 (564)
+...+...+|.+++|+++||++| .+.+.....+.+++.++.+... . ..+.+.=++.|++.|+.+.
T Consensus 70 ~~~~~~~~ig~~~~G~l~Dr~Gr------r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~ 143 (432)
T PRK10406 70 AAGFLMRPIGGWLFGRIADKHGR------KKSMLISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYG 143 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCc------HHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHh
Confidence 33344445888899999999964 4456666666666665543321 1 1355566899999999999
Q ss_pred hhHHHHHHhhccCchhhhhhhHhhhhhhHH
Q 008482 463 LMPTIASEIFGVLQMGTIFNTITIANPVGS 492 (564)
Q Consensus 463 ~~P~ivse~FG~k~fg~nyg~~~~a~~iG~ 492 (564)
....+++|.+-.|+-|...++...+...|.
T Consensus 144 ~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~ 173 (432)
T PRK10406 144 TSATYMSEVAVEGRKGFYASFQYVTLIGGQ 173 (432)
T ss_pred hHHHHHHHhCCCCcccHHHHHHHHHHHHHH
Confidence 999999999988887776666555444444
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.63 E-value=5.1e-05 Score=81.65 Aligned_cols=128 Identities=16% Similarity=0.098 Sum_probs=96.9
Q ss_pred hHHHHHHHHHHHHhcCc-ccccccccHHHHhhcCCCcchhhHHHHhhhhhcc-ccccchhhhccccCCCCCCCccchhhh
Q 008482 12 RWVSTVASIWIQCTSGS-LYTFSIYSPALKTTQHYDQTTLDTVSVFKDIGAN-TGTLSGVLYTYSTSDHSSHHPRQQRLT 89 (564)
Q Consensus 12 Rw~~l~a~~~i~l~~G~-~Y~fS~ys~~L~~~lg~sq~~~~~i~~a~~vg~~-~g~~~G~l~d~~~~~~~~~~~~~~~~~ 89 (564)
.|++++.-+++++..=. -|+-.-=-+.+++.+|++.++.-++++..++.-. ++.+.|++.||+-
T Consensus 31 ~~~~l~il~~vnlmny~Dr~~iagv~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryN-------------- 96 (493)
T KOG1330|consen 31 PTLTLVILCLVNLMNYADRYTIAGVLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYN-------------- 96 (493)
T ss_pred chHHHHHHHHHHHHHHhhhhhhhhhhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcC--------------
Confidence 34555555555543211 1333223466788899999999999887777764 5888999999863
Q ss_pred cccCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHhhhcC-CCCcceeee
Q 008482 90 RLLGPWVVLLVGAIQCFAGYFLMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFP-TYSGTAVGI 164 (564)
Q Consensus 90 ~~~GP~~~~~iG~vl~~~Gy~~~~l~~~g~i~~~~~~~l~~~~~l~G~g~~~~~ta~l~t~~k~FP-~~RG~a~Gl 164 (564)
++.++.+|.+++.+.-++ ++++ ..+|+..+.=.+.|.|-+..++.+-.--..+|| ++|+++-|+
T Consensus 97 ----R~~v~~vG~~iW~~Av~~-----~~fs--~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~i 161 (493)
T KOG1330|consen 97 ----RKRVIAVGIFIWTLAVFA-----SGFS--NHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGI 161 (493)
T ss_pred ----cceEEeeHHHHHHHHHHH-----HHHH--HHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHH
Confidence 888999999999888887 5655 358999888999999999999999999999999 589987655
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00042 Score=77.44 Aligned_cols=170 Identities=16% Similarity=0.121 Sum_probs=105.7
Q ss_pred HHHhhcHHHHHHHHHHHhhhhchhheecchhHHHhhcCCCccchhHHHHHHHHHH----HHhhhhhhhhhhhhhhcccCc
Q 008482 344 LQAICTLEFWILSFAMACGMGSGLATVNNISQIGGSLGYSSFETSSLISLWSIWN----FLGRFGAGYVSDYFLHVKEWA 419 (564)
Q Consensus 344 ~~~l~t~~Fwll~~~~~~~~g~gl~~i~n~~~i~~~~g~~~~~aa~~Vsl~si~n----~~GRl~~G~lsD~l~~~~~~~ 419 (564)
+.-+|+++|..+|++-.+..-...+..--+.-+..++.-+ ...+++...+. .+--+..|.+.||+ +
T Consensus 4 ~aplr~~~Fr~lw~a~~iS~lG~~~~~va~~wlv~~lt~S----~~~valv~~a~~LP~~Llsl~aG~laDr~------d 73 (524)
T PF05977_consen 4 FAPLRNRNFRRLWIAQLISNLGDWMQTVALAWLVTQLTGS----PLMVALVQAASTLPILLLSLFAGALADRF------D 73 (524)
T ss_pred cccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----HHHHHHHHHHHHHHHHHHHHHHHHHhhcc------c
Confidence 3457899999999987765332222211122222233333 34455544444 45557789999999 4
Q ss_pred hhHHHHHHHHHHHHHHHH---HH-hc--CcchHHHHHHHHHhhhccccchhHHHHHHhhccCchhhhhhhHhhhhhhHHH
Q 008482 420 RPLFMVITLAAMSIGHLI---IA-SG--LPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSY 493 (564)
Q Consensus 420 R~~~l~~~~~l~~i~~ll---~~-~~--~~~~l~~~~~l~G~~~G~~~~~~P~ivse~FG~k~fg~nyg~~~~a~~iG~~ 493 (564)
|..++.....+.++..+. +. .+ .+..+++.+++.|++........-+++.|+-..++....-++..+...+.-
T Consensus 74 rrrili~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar- 152 (524)
T PF05977_consen 74 RRRILILSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIAR- 152 (524)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHH-
Confidence 444555555444333221 11 22 334577788999999998888999999999998898877666665555544
Q ss_pred hhhhhhhhhhhhcccCCCCccccCCcccHHHHHHHHHHHHHHH
Q 008482 494 IFSVRVVGYIYDREASGEGNKCTGTHCFMLSFFIMGSATLCGS 536 (564)
Q Consensus 494 lf~~~l~g~iyD~~~~~~~~~C~G~~Cy~~af~i~~~l~v~a~ 536 (564)
+.|+.++|.++...+. ..+|.+.+...++.+
T Consensus 153 ~iGPalgG~Lva~~G~------------~~~f~inalsfl~~i 183 (524)
T PF05977_consen 153 IIGPALGGILVAFFGA------------AAAFLINALSFLISI 183 (524)
T ss_pred hccchHHHHHHHHHHH------------HHHHHHHHHHHHHHH
Confidence 3466678877776553 677877766555544
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.017 Score=61.86 Aligned_cols=161 Identities=18% Similarity=0.167 Sum_probs=93.9
Q ss_pred cHHHHhhcHHHHHHHHHHHhhhhchhheecchhHHHh-hcCCCccchhHHHHHHHHHHHHhhhhhhhhhhhhhhcccCch
Q 008482 342 DLLQAICTLEFWILSFAMACGMGSGLATVNNISQIGG-SLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWAR 420 (564)
Q Consensus 342 t~~~~l~t~~Fwll~~~~~~~~g~gl~~i~n~~~i~~-~~g~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~R 420 (564)
.+++.+.+++--.+++..+++..+-.|==--+-|..- -.|++.++.+.+-.+.+..-.+|-+..|++..+- .+..|
T Consensus 200 a~~~~~~~~~a~~f~~fl~l~t~a~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~---~~~~~ 276 (403)
T PF03209_consen 200 AWRQVWASPQARRFFVFLFLGTLAFFMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRR---LGKKR 276 (403)
T ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CCchH
Confidence 4567777777766655555542221110001222222 2588888888888888888889999999876632 22133
Q ss_pred hHHHHHHHHHHHHHHHHHH--hcCcchHHHHHHHHHhhhccccchhHHHHHHhhccCchhhhhhhHhhhhhhHHHhhhhh
Q 008482 421 PLFMVITLAAMSIGHLIIA--SGLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVR 498 (564)
Q Consensus 421 ~~~l~~~~~l~~i~~ll~~--~~~~~~l~~~~~l~G~~~G~~~~~~P~ivse~FG~k~fg~nyg~~~~a~~iG~~lf~~~ 498 (564)
...+.+.....++..+.++ ...+..+..+..++|++.|....-.-+...|.=...+-|.--|.--.+.++.-- ++..
T Consensus 277 ~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~G-lg~~ 355 (403)
T PF03209_consen 277 TAALGCLLGALAFALIILAGPLGSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARG-LGTF 355 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHH-HHHH
Confidence 3333333333333333332 234556888899999999998877777888887777766544443333333221 2333
Q ss_pred hhhhhhhc
Q 008482 499 VVGYIYDR 506 (564)
Q Consensus 499 l~g~iyD~ 506 (564)
+.|.+.|-
T Consensus 356 ~GG~~~D~ 363 (403)
T PF03209_consen 356 LGGALRDL 363 (403)
T ss_pred HHHHHHHH
Confidence 56777774
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00016 Score=78.20 Aligned_cols=94 Identities=14% Similarity=0.157 Sum_probs=66.1
Q ss_pred hhcccCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHhhhcC-CCCcceeeeeh
Q 008482 88 LTRLLGPWVVLLVGAIQCFAGYFLMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFP-TYSGTAVGIMK 166 (564)
Q Consensus 88 ~~~~~GP~~~~~iG~vl~~~Gy~~~~l~~~g~i~~~~~~~l~~~~~l~G~g~~~~~ta~l~t~~k~FP-~~RG~a~Gl~~ 166 (564)
+.||+|+|.++.++.++..+++.++... .... ...+++....++.|.+.+..+.+...-..+++| ++||++.|+..
T Consensus 274 l~dr~g~r~~l~~~~~~~~v~~~l~~~~-~~~~--~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~ 350 (418)
T TIGR00889 274 FLKRFGIKKVMLLSLVAWALRFGFFAYG-DPEY--FGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFT 350 (418)
T ss_pred HHHHhCcHHHHHHHHHHHHHHHHHHHHc-Ccch--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
Confidence 4445569999999999998887665331 1111 123455566777788877777777777889999 57999999996
Q ss_pred -hhhhhhHHHHHHHHHhhc
Q 008482 167 -GFVGLSGAILIQVYQTFF 184 (564)
Q Consensus 167 -a~~GLsa~i~s~i~~~~f 184 (564)
...++++.+-..+....+
T Consensus 351 ~~~~~lg~~iGp~l~G~l~ 369 (418)
T TIGR00889 351 LMCNGFGSLLGYILSGVMV 369 (418)
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 667777776665555444
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00043 Score=76.64 Aligned_cols=152 Identities=20% Similarity=0.235 Sum_probs=108.2
Q ss_pred hhcCCCccchhHHHHHHHHHHHHhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHhhh
Q 008482 378 GSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIASGLPGALYAGSILVGVCY 457 (564)
Q Consensus 378 ~~~g~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~R~~~l~~~~~l~~i~~ll~~~~~~~~l~~~~~l~G~~~ 457 (564)
+++++...+-....+++.+.-.+|.+.+|++.||+.- +.........-..++.+-........+...=++.|+.-
T Consensus 74 edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~l-----s~~l~~~~~~w~~~~~~~~~~~s~~~~ialr~llGl~e 148 (495)
T KOG2533|consen 74 EDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPL-----SKGLSVSGILWGLFGFLTAAVHSFPGLIALRFLLGLFE 148 (495)
T ss_pred cccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCCh-----HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 4555555567789999999999999999999999941 11111111111222222112333334555568899999
Q ss_pred ccccchhHHHHHHhhccCchhhhhhhHhhhhhhHHHhhhhhhhhhhhhcccCCCCccccCCcccHHHHHHHHHHHHHHHH
Q 008482 458 GSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSFFIMGSATLCGSL 537 (564)
Q Consensus 458 G~~~~~~P~ivse~FG~k~fg~nyg~~~~a~~iG~~lf~~~l~g~iyD~~~~~~~~~C~G~~Cy~~af~i~~~l~v~a~v 537 (564)
++.|...-.+++.+|+.++.|...|+.+.+..+|+. ++..++..++..+++. +...++..|++..+++++..+
T Consensus 149 s~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i-~ggliA~g~~~~~~~~------~~~gW~~~FiI~G~i~~~~gi 221 (495)
T KOG2533|consen 149 SGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNI-FGGLIAYGVFKLNGSG------GLAGWRWLFIIEGVITLVLGI 221 (495)
T ss_pred cccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhH-HHHHHHHHhhhhcCCC------CcCCceeehhHHHHHHHHHHh
Confidence 999999999999999999999999999988888885 6666777776655442 355799999999988776654
Q ss_pred HHHH
Q 008482 538 AAFG 541 (564)
Q Consensus 538 l~~~ 541 (564)
+.++
T Consensus 222 ~~f~ 225 (495)
T KOG2533|consen 222 VVFF 225 (495)
T ss_pred eEEE
Confidence 5443
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0013 Score=71.86 Aligned_cols=136 Identities=12% Similarity=0.067 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHhhhhchhheecchhHHHhhcCCCccchhHHHHHHHHHHHHhhhhhhhhhhhhhhcccCchhHHHHHHHH
Q 008482 350 LEFWILSFAMACGMGSGLATVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLA 429 (564)
Q Consensus 350 ~~Fwll~~~~~~~~g~gl~~i~n~~~i~~~~g~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~R~~~l~~~~~ 429 (564)
..|+++++.++.....-.....-++++.++.|.++.+....++.+.+...++-+..|.+.||+++ .+.+.....
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~------r~~l~~g~~ 99 (438)
T PRK10133 26 IPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSY------KAGIITGLF 99 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc------HHHHHHHHH
Confidence 35677776666654444444444566667789999899999999999999999999999999964 345666666
Q ss_pred HHHHHHHHHH---hc-CcchHHHHHHHHHhhhccccchhHHHHHHhhccCchhh-hhhhHhhhhhhHH
Q 008482 430 AMSIGHLIIA---SG-LPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGT-IFNTITIANPVGS 492 (564)
Q Consensus 430 l~~i~~ll~~---~~-~~~~l~~~~~l~G~~~G~~~~~~P~ivse~FG~k~fg~-nyg~~~~a~~iG~ 492 (564)
+.+++.++.. .. ....+.++-.+.|++.|........++.|.. .++-+. .-++......+|+
T Consensus 100 ~~~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~-~~~~~~~~~s~~~~~~~~G~ 166 (438)
T PRK10133 100 LYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLG-PESSGHFRLNLAQTFNSFGA 166 (438)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhC-ChhhHHHHHHHHHHHHHHHH
Confidence 6666665432 22 2224566678899999999999999998864 444443 3444443333333
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.013 Score=64.06 Aligned_cols=114 Identities=16% Similarity=0.156 Sum_probs=82.9
Q ss_pred ccccHHHHhhcCCCcchhhHHHHhhhhhccccccchhhhccccCCCCCCCccchhhhcccCcHHHHHHHHHHHHHHHHHH
Q 008482 33 SIYSPALKTTQHYDQTTLDTVSVFKDIGANTGTLSGVLYTYSTSDHSSHHPRQQRLTRLLGPWVVLLVGAIQCFAGYFLM 112 (564)
Q Consensus 33 S~ys~~L~~~lg~sq~~~~~i~~a~~vg~~~g~~~G~l~d~~~~~~~~~~~~~~~~~~~~GP~~~~~iG~vl~~~Gy~~~ 112 (564)
..-.+-+|+++|+|.+|++.+....++-..+-.+.|++.|.+|... +..|+=+++|+++..+++..+
T Consensus 10 ~~~~~~l~~~l~ls~~~~~~~~~~~~lPw~~Kp~~g~lsD~~pi~G-------------~rr~~Y~~i~~~~~~~~~~~~ 76 (433)
T PF03092_consen 10 LAIYPFLKDDLGLSPAQLQRLSSLASLPWSIKPLYGLLSDSFPIFG-------------YRRKPYMIIGWLLGAVSALVL 76 (433)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHhCchHHhhhHHhhcccccccC-------------CcchHHHHHHHHHHHHHHHHH
Confidence 3445779999999999999998888888888999999999997311 126777888999987776664
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHhhhhhhhhHHH---HHHHhhhcCCCCccee
Q 008482 113 WASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTAD---VVTSVRNFPTYSGTAV 162 (564)
Q Consensus 113 ~l~~~g~i~~~~~~~l~~~~~l~G~g~~~~~ta~---l~t~~k~FP~~RG~a~ 162 (564)
.+. .+.. .+......+.+++..|..+.|.++ ++-.+|.-|+.||-..
T Consensus 77 ~~~-~~~~--~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lq 126 (433)
T PF03092_consen 77 ALL-PASE--SSAAIAVVLLFLASFGYAFADVAADALVVELARREPESRGDLQ 126 (433)
T ss_pred Hhc-cccc--chhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHH
Confidence 332 3322 234445567777888888888864 5566777787766543
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0023 Score=73.42 Aligned_cols=151 Identities=17% Similarity=0.267 Sum_probs=115.3
Q ss_pred hcCCCccchhHHHHHHHHHHHHhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHhc-Cc--------chHHHH
Q 008482 379 SLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIASG-LP--------GALYAG 449 (564)
Q Consensus 379 ~~g~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~R~~~l~~~~~l~~i~~ll~~~~-~~--------~~l~~~ 449 (564)
.+|++...+...+..+.-...+--++.|++.|+.. +|.+++.+..++..+++.++... .+ ..++++
T Consensus 17 ~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~l-----G~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~g 91 (654)
T TIGR00926 17 FLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWL-----GKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLG 91 (654)
T ss_pred HcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHH
Confidence 47888777888888888888899999999999985 56677778888888888766532 11 126677
Q ss_pred HHHHHhhhccccchhHHHHHHhhccC---chhhhhhhHhhhhhhHHHhhhhhhhhhhhhcccCCCCccccC-CcccHHHH
Q 008482 450 SILVGVCYGSQWSLMPTIASEIFGVL---QMGTIFNTITIANPVGSYIFSVRVVGYIYDREASGEGNKCTG-THCFMLSF 525 (564)
Q Consensus 450 ~~l~G~~~G~~~~~~P~ivse~FG~k---~fg~nyg~~~~a~~iG~~lf~~~l~g~iyD~~~~~~~~~C~G-~~Cy~~af 525 (564)
..++.++.|+.-+-+.+...|.|..+ .+-+-|.+.+.+..+|++ +++.+.+++-+. ..|.| ..||..+|
T Consensus 92 LaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSl-is~~i~~~l~~~------~~~fg~~~~~~~aF 164 (654)
T TIGR00926 92 LALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSL-ISTIITPILRGD------VGCFGCQDCYPLAF 164 (654)
T ss_pred HHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHh------hcccccCcchHHHH
Confidence 88899999999999999999999754 366677888888888885 566667766432 23555 45899999
Q ss_pred HHHHHHHHHHHHHHHH
Q 008482 526 FIMGSATLCGSLAAFG 541 (564)
Q Consensus 526 ~i~~~l~v~a~vl~~~ 541 (564)
.+.+++.++++++-+.
T Consensus 165 ~i~~i~m~ia~lvf~~ 180 (654)
T TIGR00926 165 GVPAILMILALIVFMA 180 (654)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999988888855543
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00084 Score=74.54 Aligned_cols=135 Identities=19% Similarity=0.084 Sum_probs=100.3
Q ss_pred CCccchhHHHHHHHHHHHHhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHhcC-cchHHHHHHHHHhhhccc
Q 008482 382 YSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIASGL-PGALYAGSILVGVCYGSQ 460 (564)
Q Consensus 382 ~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~R~~~l~~~~~l~~i~~ll~~~~~-~~~l~~~~~l~G~~~G~~ 460 (564)
.+........+++-++..+|-+++|++||++| |...+...+++..++.+..+... ...+.+.=.+.|++.++.
T Consensus 115 ~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~G------Rk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~ 188 (521)
T KOG0255|consen 115 DSSTLVALGQSLFFLGVLVGSLIFGPLSDRFG------RKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGP 188 (521)
T ss_pred CcHhHHHHHHHHHHHHHHHHHhhheehHhhcc------cHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccch
Confidence 34445567788899999999999999999984 55566677777776665554433 334666779999999999
Q ss_pred cchhHHHHHHhhccCchhhhhhhHhhhhhhHHHhhhhhhhhhhhhcccCCCCccccCCcccHHHHHHHHHHHHHHHHH
Q 008482 461 WSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSFFIMGSATLCGSLA 538 (564)
Q Consensus 461 ~~~~P~ivse~FG~k~fg~nyg~~~~a~~iG~~lf~~~l~g~iyD~~~~~~~~~C~G~~Cy~~af~i~~~l~v~a~vl 538 (564)
+.+...+++|++++|+=+..=.+ ....-.+++ +.+.+.+++... ++..+++.....++.+++
T Consensus 189 ~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~-~~~~~~a~~~~~--------------Wr~~~~~~~~~~~~~~~~ 250 (521)
T KOG0255|consen 189 LTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGL-MLPAGAAYITRD--------------WRWLFWIISIPSGLFLLL 250 (521)
T ss_pred hHHhHhhheeecCcchhhHHHHH-HHHHHHHHH-HHHHHHHHHHhh--------------HHHHHHHHHHHHHHHHHH
Confidence 99999999999999988766666 444445554 344456666662 788888888888777655
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0017 Score=69.12 Aligned_cols=150 Identities=14% Similarity=0.098 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHHhcCcccccccccHHHHhhcCCCcchhhHHHHhh-hhhccc-cccchhhhccccCCCCCCCccchhhhc
Q 008482 13 WVSTVASIWIQCTSGSLYTFSIYSPALKTTQHYDQTTLDTVSVFK-DIGANT-GTLSGVLYTYSTSDHSSHHPRQQRLTR 90 (564)
Q Consensus 13 w~~l~a~~~i~l~~G~~Y~fS~ys~~L~~~lg~sq~~~~~i~~a~-~vg~~~-g~~~G~l~d~~~~~~~~~~~~~~~~~~ 90 (564)
|..++...+.+...+..|.|. ++.+++ .|++.+++..+.... .++..+ .+..|++.||+
T Consensus 211 ~~~~~~~~l~~~~~~~~~~~~--~~~l~~-~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~---------------- 271 (390)
T TIGR02718 211 WSLLALALLSAMTAVSGFGLS--KLYLVD-AGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRA---------------- 271 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHh--hHHHHh-cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh----------------
Confidence 556666677777777777753 455655 799999987553322 223333 34556666654
Q ss_pred ccCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHhhhcC--CCCcceeeeehhh
Q 008482 91 LLGPWVVLLVGAIQCFAGYFLMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFP--TYSGTAVGIMKGF 168 (564)
Q Consensus 91 ~~GP~~~~~iG~vl~~~Gy~~~~l~~~g~i~~~~~~~l~~~~~l~G~g~~~~~ta~l~t~~k~FP--~~RG~a~Gl~~a~ 168 (564)
|+|.++.++.++...+... +.........++.+.+.....+.+.+.+....+.....++..+ ++||++.++..+.
T Consensus 272 --g~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 348 (390)
T TIGR02718 272 --GLWRTFILGVGLAGSLALL-WFAQAAFWLAPGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQST 348 (390)
T ss_pred --hHHHHHHHHHHHHHHHHHH-HHHHHHcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 5888888877766444332 3322222111223333333344444555555555555566664 5789999999999
Q ss_pred hhhhHHHHHHHHHhhc
Q 008482 169 VGLSGAILIQVYQTFF 184 (564)
Q Consensus 169 ~GLsa~i~s~i~~~~f 184 (564)
.+++..+-+.+....+
T Consensus 349 ~~lg~~~g~~~~G~l~ 364 (390)
T TIGR02718 349 RDLGELIASSIAGYLT 364 (390)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999877765544433
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0054 Score=66.45 Aligned_cols=112 Identities=19% Similarity=0.144 Sum_probs=73.8
Q ss_pred hhHHHhhcCCCccchh-HHHHHH-----HHHHHHhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHhcCc-c-
Q 008482 373 ISQIGGSLGYSSFETS-SLISLW-----SIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIASGLP-G- 444 (564)
Q Consensus 373 ~~~i~~~~g~~~~~aa-~~Vsl~-----si~n~~GRl~~G~lsD~l~~~~~~~R~~~l~~~~~l~~i~~ll~~~~~~-~- 444 (564)
.+++.++.+.++.+.. ...+.. .+...+|.+.+|+++||++| ++.+.....+.+++.++...... .
T Consensus 38 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Gr------r~~l~~~~~~~~~~~~l~~~~~~~~~ 111 (434)
T PRK15075 38 ATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGR------RKGLIVTLSIMASGTLLIAFVPGYAT 111 (434)
T ss_pred HHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhch------HHHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 4455677877665533 222222 22224678899999999964 34455555666666555543221 1
Q ss_pred -------hHHHHHHHHHhhhccccchhHHHHHHhhccCchhhhhhhHhhhhhh
Q 008482 445 -------ALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPV 490 (564)
Q Consensus 445 -------~l~~~~~l~G~~~G~~~~~~P~ivse~FG~k~fg~nyg~~~~a~~i 490 (564)
.+.+.-++.|++.|..+...+.+++|++-.|+-|+.-++...+..+
T Consensus 112 ~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~ 164 (434)
T PRK15075 112 IGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQV 164 (434)
T ss_pred HHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHH
Confidence 2455668899999999999999999999999989888876544333
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00089 Score=71.95 Aligned_cols=160 Identities=14% Similarity=0.107 Sum_probs=90.1
Q ss_pred hhHHH-hhcCCCccchhHHHHHHHHHHHHhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHh-cC-c--c---
Q 008482 373 ISQIG-GSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIAS-GL-P--G--- 444 (564)
Q Consensus 373 ~~~i~-~~~g~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~R~~~l~~~~~l~~i~~ll~~~-~~-~--~--- 444 (564)
+.+.. +..|.++..++...++..++.++..++.|+++||.++|++-+|++.+ ....+.+++.+++.. .. . .
T Consensus 22 l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~-~~~~~~~i~~~~~~~~~~~~~~~~~~ 100 (437)
T TIGR00792 22 LLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLL-IGAIPFSIVLVLLFTTPDFSATGKLV 100 (437)
T ss_pred HHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHH-HhHHHHHHHHHHHHhCCCCCcchHHH
Confidence 33444 45799999999999999999999999999999999887764455544 343444444433322 11 1 1
Q ss_pred hHHHHHHHHHhhhccccchhHHHHHHhhc-cCchhhhhhhHhhhhhhHHHhhhhhhhhhhhhcccCCCCccccCCcccHH
Q 008482 445 ALYAGSILVGVCYGSQWSLMPTIASEIFG-VLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFML 523 (564)
Q Consensus 445 ~l~~~~~l~G~~~G~~~~~~P~ivse~FG-~k~fg~nyg~~~~a~~iG~~lf~~~l~g~iyD~~~~~~~~~C~G~~Cy~~ 523 (564)
.+.+..++.+.+++....-+-++..|..- .++-++..++-..+..+|..+. ..+.+.+....+... ...-++.
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~-~~~~~~l~~~~~~~~-----~~~g~~~ 174 (437)
T TIGR00792 101 YAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLV-AVIVLPLVSYFGGGD-----DKFGWFM 174 (437)
T ss_pred HHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCCc-----ccccHHH
Confidence 12334456677777655555566666653 3444555555444444444321 112233332111000 0113677
Q ss_pred HHHHHHHHHHHHHHHH
Q 008482 524 SFFIMGSATLCGSLAA 539 (564)
Q Consensus 524 af~i~~~l~v~a~vl~ 539 (564)
.|.+.+++.++..++.
T Consensus 175 ~~~i~~~l~~~~~~~~ 190 (437)
T TIGR00792 175 FALVLALIGVVSLIIC 190 (437)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7777776666555443
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.00099 Score=71.91 Aligned_cols=167 Identities=18% Similarity=0.206 Sum_probs=89.0
Q ss_pred hhcHHHHHHHHHHHhhhhchhheecchhHHHhh-cCCCccchhHHHHHHHHHHHHhhhhhhhhhhhhhhcccCchhHHHH
Q 008482 347 ICTLEFWILSFAMACGMGSGLATVNNISQIGGS-LGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMV 425 (564)
Q Consensus 347 l~t~~Fwll~~~~~~~~g~gl~~i~n~~~i~~~-~g~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~R~~~l~ 425 (564)
.|+++||.+-..+++--.+--....-.+--+++ .|++.++.....|..++...+...+.|.++||++.|++ -.+++.
T Consensus 4 ~~~~~~~~~s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~--Ll~~i~ 81 (412)
T PF01306_consen 4 FKNKNYWWLSLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKH--LLWFIA 81 (412)
T ss_dssp CHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSH--HHHHHH
T ss_pred ccCchHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHH--HHHHHH
Confidence 367788855444433322222333335555554 89999999999999999999999999999999987654 112222
Q ss_pred HHHHHHHHHHHHHHh--cCcchHHHHHH----HHHhhhccccchhHHHHHHhhccCchhhhhhh----HhhhhhhHHHhh
Q 008482 426 ITLAAMSIGHLIIAS--GLPGALYAGSI----LVGVCYGSQWSLMPTIASEIFGVLQMGTIFNT----ITIANPVGSYIF 495 (564)
Q Consensus 426 ~~~~l~~i~~ll~~~--~~~~~l~~~~~----l~G~~~G~~~~~~P~ivse~FG~k~fg~nyg~----~~~a~~iG~~lf 495 (564)
+..++.+ .++.... -....++++++ .+|+++.+..++.=+.+.+ + .|.++-.||= -.++.++++.
T Consensus 82 ~l~~l~~-pff~~v~~pll~~n~~lg~iig~i~l~~~f~~~~~~~Ea~~er-~-sr~~~feYG~~R~wGSig~ai~s~-- 156 (412)
T PF01306_consen 82 ILLLLFG-PFFIYVFGPLLQSNFWLGAIIGGIYLGLVFNAGVPLSEAYAER-V-SRRNGFEYGRARMWGSIGFAIASL-- 156 (412)
T ss_dssp HHHHTCH-HHHHHTHHHHHHTT-HHHHHHTTTTTTTTTTTHHHHHHHHHHH-H-HHHHSS-HHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHH-H-HHHhcCCcchHHHHhhHHHHHHHH--
Confidence 2111111 1111111 00112444433 3455555555555444332 2 2444445554 4566666664
Q ss_pred hhhhhhhhhhcccCCCCccccCCcccHHHHHHHHHHHHHHH
Q 008482 496 SVRVVGYIYDREASGEGNKCTGTHCFMLSFFIMGSATLCGS 536 (564)
Q Consensus 496 ~~~l~g~iyD~~~~~~~~~C~G~~Cy~~af~i~~~l~v~a~ 536 (564)
++|.+++.+. +..|++..+..++-+
T Consensus 157 ---~~G~L~~i~p-------------~~~fwi~s~~~~il~ 181 (412)
T PF01306_consen 157 ---LAGILFNINP-------------NIIFWIASAAAIILL 181 (412)
T ss_dssp ---HHHHHHHHHH-------------HHHHHHHHHHHHHHH
T ss_pred ---HhheeeeeCc-------------cHHHHHHHHHHHHHH
Confidence 5888888642 566666555444433
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.36 Score=53.11 Aligned_cols=91 Identities=19% Similarity=0.211 Sum_probs=63.8
Q ss_pred cCCCcchhhHH-HHhhhhhccccccchhhhccccCCCCCCCccchhhhcccCcHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 008482 43 QHYDQTTLDTV-SVFKDIGANTGTLSGVLYTYSTSDHSSHHPRQQRLTRLLGPWVVLLVGAIQCFAGYFLMWASVVGLIP 121 (564)
Q Consensus 43 lg~sq~~~~~i-~~a~~vg~~~g~~~G~l~d~~~~~~~~~~~~~~~~~~~~GP~~~~~iG~vl~~~Gy~~~~l~~~g~i~ 121 (564)
+|+||++...+ +....+-=.+.+++|++.||+ .|.|.++.+|+++..+|++++..+ +..
T Consensus 56 Lg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~-----------------LG~~~tI~lGail~~iGh~~L~~~--~~~- 115 (498)
T COG3104 56 LGFDETHATGLFSAYGSLVYLTPIIGGWLADRV-----------------LGTRRTIVLGAILMAIGHLVLAIS--SVS- 115 (498)
T ss_pred CCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHh-----------------cchhHHHHHHHHHHHHHHHHHhcc--ccc-
Confidence 66999988744 444333333578999999997 589999999999999999996554 211
Q ss_pred CCCHHHHHHHHHHHhhhhhhhhHHHHHHHhhhcC
Q 008482 122 RPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFP 155 (564)
Q Consensus 122 ~~~~~~l~~~~~l~G~g~~~~~ta~l~t~~k~FP 155 (564)
.+..++.. ..+.++|.|.+=...-.-.-+-+|
T Consensus 116 -~~~gl~i~-L~~I~iG~Gl~K~NiS~llg~ly~ 147 (498)
T COG3104 116 -GPGGLYIG-LALIIVGTGLFKPNISSLLGELYP 147 (498)
T ss_pred -cccHHHHH-HHHHHhccccccccHHHHHHHhcC
Confidence 12233333 333448888887777777778886
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.013 Score=63.50 Aligned_cols=134 Identities=17% Similarity=0.185 Sum_probs=90.3
Q ss_pred HHHHHHHHHHhhhhchhheecchhHHHhhcCCCccchhHHHHHHHHHHHHhhhhhhhhhhhhhhcccCchhHHHHHHHHH
Q 008482 351 EFWILSFAMACGMGSGLATVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAA 430 (564)
Q Consensus 351 ~Fwll~~~~~~~~g~gl~~i~n~~~i~~~~g~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~R~~~l~~~~~l 430 (564)
+...+.+.++...|+-+.+ ++..+++.|++..+.....++..+...++..+||+++||..+ +...+.+..++
T Consensus 6 rLs~~~f~~f~~~G~~~p~---~~~~L~~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~-----~~~~l~~~~l~ 77 (400)
T PF03825_consen 6 RLSLMYFLYFFAYGAFLPY---LPLYLESRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGS-----AKRILALLSLL 77 (400)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh-----HHHHHHHHHHH
Confidence 3344555556666665555 678899999999999999999999999999999999999853 23344455555
Q ss_pred HHHHHHHHH-hcCcchHHHHHHHHHhhhccccchhHHHHHHhhccCchhhhhhhH----hhhhhhHHHh
Q 008482 431 MSIGHLIIA-SGLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTI----TIANPVGSYI 494 (564)
Q Consensus 431 ~~i~~ll~~-~~~~~~l~~~~~l~G~~~G~~~~~~P~ivse~FG~k~fg~nyg~~----~~a~~iG~~l 494 (564)
.++.+++.. ......+....++..+.+....++.-+++.+.=+ +-+.+||-+ .++..+++..
T Consensus 78 ~~~~~~~~~~~~~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~--~~~~~YG~iRlwGSiGf~~~~~~ 144 (400)
T PF03825_consen 78 SALALLLLAFSSSFWWLFVIMLLFSFFFSPTMPLSDSIALSYLG--DRGKDYGRIRLWGSIGFIVAALA 144 (400)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHccHHHHHHHHHHHHcc--cccCCCCcchhhhhHHHHHHHHH
Confidence 555444433 2233345555667778887777777777777654 345555544 5666666543
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.011 Score=65.63 Aligned_cols=132 Identities=22% Similarity=0.260 Sum_probs=90.1
Q ss_pred hHHHHHHHHHHHHhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHhc-CcchHHHHHHHHHhhhccccchhHH
Q 008482 388 SSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIASG-LPGALYAGSILVGVCYGSQWSLMPT 466 (564)
Q Consensus 388 a~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~R~~~l~~~~~l~~i~~ll~~~~-~~~~l~~~~~l~G~~~G~~~~~~P~ 466 (564)
++++|..++.+..|.+.+|.++|+++ |...+.+..++..++.++.+.. ....++++-++.|++.|+...+.|.
T Consensus 92 s~~~s~~~lga~~g~l~~g~l~d~~G------Rk~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~pi 165 (513)
T KOG0254|consen 92 GLLTSILNLGALVGSLLAGRLGDRIG------RKKTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPV 165 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh------hHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchh
Confidence 79999999999999999999999995 4455677777777776665433 3446888899999999999999999
Q ss_pred HHHHhhccCchhhhhhhHhhhhhhHHHhhhhhhhhhhhhcc-cCCCCccccCCcccHHHHHHHHHHHHHHHHH
Q 008482 467 IASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDRE-ASGEGNKCTGTHCFMLSFFIMGSATLCGSLA 538 (564)
Q Consensus 467 ivse~FG~k~fg~nyg~~~~a~~iG~~lf~~~l~g~iyD~~-~~~~~~~C~G~~Cy~~af~i~~~l~v~a~vl 538 (564)
.++|+=..+.=|..=....+...+|.. ++ .+.|...+.. .. ++..+.+..+.+++-.+.
T Consensus 166 y~sEiap~~~RG~l~~~~~l~~~~Gi~-~~-~~~~~~~~~~~~~-----------Wr~~~~~~~i~~~~~~~~ 225 (513)
T KOG0254|consen 166 YISEIAPAHIRGTLVSLYQLFITIGIL-LG-YCINYGTSKVYAG-----------WRIPLGLALIPAVILALG 225 (513)
T ss_pred hHhhcCChhhhHHHHHHHHHHHHHHHH-HH-HHHhhhhccCCcc-----------HHHHHHHHHHHHHHHHHH
Confidence 999997554444333334444554443 33 2344333322 11 566666665555555534
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0058 Score=65.45 Aligned_cols=128 Identities=20% Similarity=0.235 Sum_probs=85.8
Q ss_pred HHHHHHHHHHhhhhchhheecchhHHHhhcCCCccchhHHHHHHHHHHHHhhhhhhhhhhhhhhcccCchhHHHHHHHHH
Q 008482 351 EFWILSFAMACGMGSGLATVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAA 430 (564)
Q Consensus 351 ~Fwll~~~~~~~~g~gl~~i~n~~~i~~~~g~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~R~~~l~~~~~l 430 (564)
..|+=++.+.++-..-.+.-.-..+|-++.++++.+..+++++=.+...+-|+.-|++.||++ +|.|.. +..++
T Consensus 15 ~L~~S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfG-----gR~~~~-~s~~l 88 (417)
T COG2223 15 NLWLSTLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFG-----GRKWTI-LSMLL 88 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccC-----chHHHH-HHHHH
Confidence 444444444444333322222233455778999999999999999999999999999999998 565543 33333
Q ss_pred HHHHHHHH--HhcCc--chHHHHHHHHHhhhccccchhHHHHHHhhccCchhhhhhhHh
Q 008482 431 MSIGHLII--ASGLP--GALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTIT 485 (564)
Q Consensus 431 ~~i~~ll~--~~~~~--~~l~~~~~l~G~~~G~~~~~~P~ivse~FG~k~fg~nyg~~~ 485 (564)
..+-++.+ +...+ ..+++...+.|++ |+.|++--+.++++|-.|+.|.--|+--
T Consensus 89 ~~IP~~~~~~a~~~~~~~~ll~~gll~G~~-GasFav~m~~~s~~fP~~~qG~AlGI~g 146 (417)
T COG2223 89 LLIPCLGLAFAVTYPSTWQLLVIGLLLGLA-GASFAVGMPNASFFFPKEKQGLALGIAG 146 (417)
T ss_pred HHHHHHHHHHHccCCchHHHHHHHHHHhcc-cceehcccccccccCChhhhhHHHHHhc
Confidence 33333333 23233 2577777888887 5566676778899999999998777654
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.00017 Score=80.88 Aligned_cols=73 Identities=22% Similarity=0.119 Sum_probs=0.0
Q ss_pred CcHHHHhhcHHHHHHHHHHHhhhhchhheecchhHHHhhc-CCCccchhHHHHHHHH-HHHHhhhhhhhhhhhhh
Q 008482 341 LDLLQAICTLEFWILSFAMACGMGSGLATVNNISQIGGSL-GYSSFETSSLISLWSI-WNFLGRFGAGYVSDYFL 413 (564)
Q Consensus 341 ~t~~~~l~t~~Fwll~~~~~~~~g~gl~~i~n~~~i~~~~-g~~~~~aa~~Vsl~si-~n~~GRl~~G~lsD~l~ 413 (564)
.+.+++++++.|=.+.++..+-......+..-++.+.|.+ +.+++.++.+.++..+ ..++|-++.|++..|+.
T Consensus 296 ~~l~~Ll~Np~f~~~~la~~~~~~~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~k 370 (539)
T PF03137_consen 296 KALKRLLTNPVFMCLILAGVFESFIVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFK 370 (539)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred HHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEec
Confidence 4678999999998888877777777777777788888764 8888889999888888 55699999999887774
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.00045 Score=74.58 Aligned_cols=148 Identities=14% Similarity=0.119 Sum_probs=111.6
Q ss_pred hhcCCCccchhHHHHHHHHHHHHhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHhcCc-chHHHHHHHHHhh
Q 008482 378 GSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIASGLP-GALYAGSILVGVC 456 (564)
Q Consensus 378 ~~~g~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~R~~~l~~~~~l~~i~~ll~~~~~~-~~l~~~~~l~G~~ 456 (564)
+..+.++....++-+.+.+.-.+.-.+.|++.||. .|++.+++...+-.++.+.-.+... ..+.+.=.++|++
T Consensus 61 ~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadry------NR~~v~~vG~~iW~~Av~~~~fs~~Fwq~~l~R~~vGiG 134 (493)
T KOG1330|consen 61 TYFNISDSELGLLQTVFIVVFMIASPLFGYLADRY------NRKRVIAVGIFIWTLAVFASGFSNHFWQVLLCRGFVGIG 134 (493)
T ss_pred HhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhc------CcceEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 34567777778888888898899999999999999 6666565555554444443322211 2355566899999
Q ss_pred hccccchhHHHHHHhhccCchhhhhhhHhhhhhhHHHhhhhhhhhhhhhcccCCCCccccCCcccHHHHHHHHHHHHHHH
Q 008482 457 YGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSFFIMGSATLCGS 536 (564)
Q Consensus 457 ~G~~~~~~P~ivse~FG~k~fg~nyg~~~~a~~iG~~lf~~~l~g~iyD~~~~~~~~~C~G~~Cy~~af~i~~~l~v~a~ 536 (564)
-.....+.|++++|.|-..+=+.-+++.+.+.++|+. +|....+.+-+.+.. .+.+|.+.+++.++..
T Consensus 135 eAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsg-lG~vvgs~va~~~~~-----------Wr~af~~~avl~vi~~ 202 (493)
T KOG1330|consen 135 EASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSG-LGYVVGSVVASLTFW-----------WRWAFRGSAVLGVIVG 202 (493)
T ss_pred hhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccc-eeEEeeeeeccCccc-----------eEEEEEeehHHHHHHH
Confidence 9999999999999999998999999999999999985 566555666666665 5888888888888777
Q ss_pred HHHHHHH
Q 008482 537 LAAFGLF 543 (564)
Q Consensus 537 vl~~~l~ 543 (564)
++..+..
T Consensus 203 ~L~~~f~ 209 (493)
T KOG1330|consen 203 LLVFLFV 209 (493)
T ss_pred HHHHhhc
Confidence 6665544
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.012 Score=64.96 Aligned_cols=179 Identities=16% Similarity=0.068 Sum_probs=107.0
Q ss_pred hcHHHHHHHHHHHhhhhchhheecchhHHHh-hcCCCccchhHHHHHHHHHHHHhhhhhhhhhhhhhhcccCchhHHHHH
Q 008482 348 CTLEFWILSFAMACGMGSGLATVNNISQIGG-SLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVI 426 (564)
Q Consensus 348 ~t~~Fwll~~~~~~~~g~gl~~i~n~~~i~~-~~g~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~R~~~l~~ 426 (564)
.+....++...++.- |....+..-+.++.+ ++|.++++.+.++++.++--.+ +.+||.++|++. .++.+|.+.+.+
T Consensus 24 ~~~~~~~~~~~y~~q-Gl~~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~-K~l~g~l~D~~~-i~G~rRr~~l~~ 100 (468)
T TIGR00788 24 PRVVLAIGLQVLFVK-GIAGLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWAL-KPFAGVMSDTFP-LFGYTKRWYLVL 100 (468)
T ss_pred cchHHHHHHHHHHHh-hHHHHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHhcC-CCCccchHHHHH
Confidence 344555555555443 444444456666666 5799988888888888888776 666999999995 233346666666
Q ss_pred HHHHH-HHHHHHHHhcCc-chHH-HHHHHHHhhhccccchhHHHHHHhhccCchhh---hhhhHhhhhhhHHHhhhhhhh
Q 008482 427 TLAAM-SIGHLIIASGLP-GALY-AGSILVGVCYGSQWSLMPTIASEIFGVLQMGT---IFNTITIANPVGSYIFSVRVV 500 (564)
Q Consensus 427 ~~~l~-~i~~ll~~~~~~-~~l~-~~~~l~G~~~G~~~~~~P~ivse~FG~k~fg~---nyg~~~~a~~iG~~lf~~~l~ 500 (564)
..++. +++...+..... ..+. +...+.+++.+..-...=.++.|..- +.-+. +..+.+....+|.. +++.+.
T Consensus 101 ~~~l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~-vg~~l~ 178 (468)
T TIGR00788 101 SGLLGSAILYGLLPGKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGL-ISSLLG 178 (468)
T ss_pred HHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHH-HHHHHH
Confidence 55555 233322322111 1222 24567788888887778888888886 33221 22222222223332 344467
Q ss_pred hhhhhcccCCCCccccCCcccHHHHHHHHHHHHHHHHHHHHHH
Q 008482 501 GYIYDREASGEGNKCTGTHCFMLSFFIMGSATLCGSLAAFGLF 543 (564)
Q Consensus 501 g~iyD~~~~~~~~~C~G~~Cy~~af~i~~~l~v~a~vl~~~l~ 543 (564)
|.+.|..+ .+..|.+.+++.++..+...+++
T Consensus 179 G~l~~~~~------------~~~~f~~~a~l~ll~~~~~~~~~ 209 (468)
T TIGR00788 179 GPLLDKTL------------TRILFLITAALLLLQLFVSNLSK 209 (468)
T ss_pred HHHHHhcC------------cchHHHHHHHHHHHHHHHHHhcc
Confidence 88888755 47888888877777654444443
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0037 Score=66.52 Aligned_cols=147 Identities=15% Similarity=0.101 Sum_probs=115.4
Q ss_pred CCccchhHHHHHHHHHHHHhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHhcC-cchHHHHHHHHHhhhccc
Q 008482 382 YSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIASGL-PGALYAGSILVGVCYGSQ 460 (564)
Q Consensus 382 ~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~R~~~l~~~~~l~~i~~ll~~~~~-~~~l~~~~~l~G~~~G~~ 460 (564)
-...+..++....++.+.+--.+.|.+.||++.| .-+.+-+.++..+-.++++.. ...+.++=.+-|++....
T Consensus 103 ~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~------ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~ 176 (464)
T KOG3764|consen 103 RENTQIGLLFASKALVQLLVNPFFGNLIDRIGYK------IPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFA 176 (464)
T ss_pred ccccchhHHHHHHHHHHHHhcccchhhHHHhccc------cHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHH
Confidence 3445567888999999999999999999999643 335566666666666666543 446777889999999999
Q ss_pred cchhHHHHHHhhccCch-hhhhhhHhhhhhhHHHhhhhhhhhhhhhcccCCCCccccCCcccHHHHHHHHHHHHHHHHHH
Q 008482 461 WSLMPTIASEIFGVLQM-GTIFNTITIANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSFFIMGSATLCGSLAA 539 (564)
Q Consensus 461 ~~~~P~ivse~FG~k~f-g~nyg~~~~a~~iG~~lf~~~l~g~iyD~~~~~~~~~C~G~~Cy~~af~i~~~l~v~a~vl~ 539 (564)
++.--++++|.|..+|= |+.-|+...+..+|-+ .+++..|.+||.-| |...|+|.++++.+...+.
T Consensus 177 ~tsglamlAd~f~~d~er~~vmGialgfislG~l-vgPpfGGilYe~~G------------k~aPFlVL~~v~Lld~~L~ 243 (464)
T KOG3764|consen 177 DTSGLAMLADVFPEDNERGSVMGIALGFISLGVL-VGPPFGGILYEFAG------------KSAPFLVLAIVLLLDGALQ 243 (464)
T ss_pred HhhhHHHHHHHcccchhhhHHHHHHHHHHhccce-ecCCcccchHhhcC------------CcCcHHHHHHHHHHHHHHH
Confidence 99999999999987764 7777777777777764 57778999999988 6999999999999988888
Q ss_pred HHHHHhhh
Q 008482 540 FGLFLRTK 547 (564)
Q Consensus 540 ~~l~~r~~ 547 (564)
+.+...+|
T Consensus 244 l~vi~p~~ 251 (464)
T KOG3764|consen 244 LLVIEPTE 251 (464)
T ss_pred HheeCccc
Confidence 77665443
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0053 Score=68.44 Aligned_cols=169 Identities=18% Similarity=0.171 Sum_probs=120.8
Q ss_pred HHHHHHHHhhhhchhheecchh----HHHhhcCCCccchhHHHHHHHHHHHHhhhhhhhhhhhhhhcccCchhHHHHHHH
Q 008482 353 WILSFAMACGMGSGLATVNNIS----QIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITL 428 (564)
Q Consensus 353 wll~~~~~~~~g~gl~~i~n~~----~i~~~~g~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~R~~~l~~~~ 428 (564)
|.+.++.++..+....+++..+ .+.++.+.+.++.++..|+..-...+.-.+.+.+.||++. |. +..+..
T Consensus 45 WvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~-----R~-v~i~G~ 118 (509)
T KOG2504|consen 45 WVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGC-----RT-VMIAGG 118 (509)
T ss_pred eeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCc-----hH-HHHHHH
Confidence 4444444444455555555555 3334567777778888888887777777888888899863 33 345566
Q ss_pred HHHHHHHHHHHhcCc-chHHH-HHHHHHhhhccccchhHHHHHHhhccCchhhhhhhHhhhhhhHHHhhhhhhhhhhhhc
Q 008482 429 AAMSIGHLIIASGLP-GALYA-GSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDR 506 (564)
Q Consensus 429 ~l~~i~~ll~~~~~~-~~l~~-~~~l~G~~~G~~~~~~P~ivse~FG~k~fg~nyg~~~~a~~iG~~lf~~~l~g~iyD~ 506 (564)
++.++++++..+... ..+++ ..++.|++.|..+.-...++..+|- |+=+.-=|+...+.++|..+|++ +--.+.|.
T Consensus 119 ~v~~~g~~lssF~~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~-kkR~lA~Gia~~GsG~G~~~~~~-l~~~l~~~ 196 (509)
T KOG2504|consen 119 LVAALGLLLSSFATSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYFE-KKRALATGIAVSGTGVGTVVFPP-LLKYLLSK 196 (509)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHhhccchhhhcchhhhhhhHhH-HHHHHHHhhhhccCCcceeeHHH-HHHHHHHH
Confidence 677777776554332 23444 5688999999999999999999995 77788889999999999998876 68888998
Q ss_pred ccCCCCccccCCcccHHHHHHHHHHHHHHHHHHHH
Q 008482 507 EASGEGNKCTGTHCFMLSFFIMGSATLCGSLAAFG 541 (564)
Q Consensus 507 ~~~~~~~~C~G~~Cy~~af~i~~~l~v~a~vl~~~ 541 (564)
.+ .+.++++...+++-.++..+.
T Consensus 197 ~G------------~r~~~l~~~~~~l~~~~~~~~ 219 (509)
T KOG2504|consen 197 YG------------WRGALLIFGGISLNVLVAGAL 219 (509)
T ss_pred hC------------cHHHHHHHHHHHHHHHHHHHH
Confidence 87 488888888888665544443
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.019 Score=60.68 Aligned_cols=171 Identities=14% Similarity=0.069 Sum_probs=106.4
Q ss_pred HHHHHHHHhhhhchhheecchhHHHh----hcCCCccchhHHHHHHHHHHHHhhhhhhhhhhhhhhcccCchhHHHHHHH
Q 008482 353 WILSFAMACGMGSGLATVNNISQIGG----SLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITL 428 (564)
Q Consensus 353 wll~~~~~~~~g~gl~~i~n~~~i~~----~~g~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~R~~~l~~~~ 428 (564)
|++.....+...--=..+..++|++. +.|.+.+.++.+.++=-++-...-.+.. ++.||++..|. +....
T Consensus 11 ~~li~gIvlia~NLR~~itsvgPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~----~Lar~~g~er~--l~~~L 84 (395)
T COG2807 11 LLLLAGIVLIAFNLRPAITSVGPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAP----RLARRFGEERS--LFLAL 84 (395)
T ss_pred hHHHHHHHHHHhccchhhhhhhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhH----HHHHHHhhHHH--HHHHH
Confidence 54444444442222244555666554 5688877777776665554444444444 44444444454 45555
Q ss_pred HHHHHHHHHHHhcCcchHHHHHHHHHhhhccccchhHHHHHHhhccCchhhhhhhHhhhhhhHHHhhhhhhhhhhhhccc
Q 008482 429 AAMSIGHLIIASGLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREA 508 (564)
Q Consensus 429 ~l~~i~~ll~~~~~~~~l~~~~~l~G~~~G~~~~~~P~ivse~FG~k~fg~nyg~~~~a~~iG~~lf~~~l~g~iyD~~~ 508 (564)
++.+++.++=.......++.++.+.|.+-+..-.+.|+++.|.|+ |+-|..-|+-.++-.+|+- .+.-+.-.+-+..+
T Consensus 85 lli~~G~~iR~~~~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fp-k~~~~mtglYs~sl~~~aa-Laa~lavpla~~~~ 162 (395)
T COG2807 85 LLIAAGILIRSLGGLPLLFLGTLLAGAGIAVINVLLPSLIKRDFP-KRVGLMTGLYSTSLGAGAA-LAAALAVPLAQHSG 162 (395)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcc-cchhhHHhHHHHHHHHHHH-HHhhhhhHHHHhhc
Confidence 566666655333333468999999999999999999999999996 7788777766555444442 22223333344444
Q ss_pred CCCCccccCCcccHHHHHHHHHHHHHHHHHHHHHH
Q 008482 509 SGEGNKCTGTHCFMLSFFIMGSATLCGSLAAFGLF 543 (564)
Q Consensus 509 ~~~~~~C~G~~Cy~~af~i~~~l~v~a~vl~~~l~ 543 (564)
+ .+.+...++..+++++ +.++-.
T Consensus 163 g-----------W~~aL~~WAl~allAl-~~WlPq 185 (395)
T COG2807 163 G-----------WRGALGFWALLALLAL-LIWLPQ 185 (395)
T ss_pred c-----------HHHHHHHHHHHHHHHH-HHHhhh
Confidence 4 6899999999998887 444433
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.0066 Score=64.33 Aligned_cols=112 Identities=19% Similarity=0.173 Sum_probs=81.3
Q ss_pred chhHHHHHHHHHHHHhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHhcCcchHHHHH-HHHHhhhccccchh
Q 008482 386 ETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIASGLPGALYAGS-ILVGVCYGSQWSLM 464 (564)
Q Consensus 386 ~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~R~~~l~~~~~l~~i~~ll~~~~~~~~l~~~~-~l~G~~~G~~~~~~ 464 (564)
-+...-|.+++.-++.-..||-+||+.|| ..++.+.....++..++++.......++.+ .+.|+.- +..++.
T Consensus 69 yaGflGSsF~ilQ~~sS~~~G~~SD~yGR------kpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~k-gnl~v~ 141 (451)
T KOG2615|consen 69 YAGFLGSSFSILQFISSPLWGCLSDRYGR------KPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFK-GNLSVI 141 (451)
T ss_pred hhhhHhhHHHHHHHHhhhhhhhhhhhhCc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-CchHHH
Confidence 35677888999999999999999999964 334444444555565555544433334443 4445544 466889
Q ss_pred HHHHHHhhccCchhhhhhhHhhhhhhHHHhhhhhhhhhhhh
Q 008482 465 PTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYD 505 (564)
Q Consensus 465 P~ivse~FG~k~fg~nyg~~~~a~~iG~~lf~~~l~g~iyD 505 (564)
-++++|.+-.|+-+.-.+.+.++..+|-+ .||++.|++-.
T Consensus 142 rAiisdV~sek~r~l~ms~v~~a~~lGfi-lGPmIGgyla~ 181 (451)
T KOG2615|consen 142 RAIISDVVSEKYRPLGMSLVGTAFGLGFI-LGPMIGGYLAQ 181 (451)
T ss_pred HHHHHhhcChhhccceeeeeehhhhcchh-hcchhhhHHHh
Confidence 99999999999999998888888888874 68888887665
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.007 Score=65.78 Aligned_cols=92 Identities=17% Similarity=0.196 Sum_probs=60.8
Q ss_pred hhcCCCccchhHHHHHHHHHHHHhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHhc--C-cc--h--HHHHH
Q 008482 378 GSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIASG--L-PG--A--LYAGS 450 (564)
Q Consensus 378 ~~~g~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~R~~~l~~~~~l~~i~~ll~~~~--~-~~--~--l~~~~ 450 (564)
+..|+++.+.+..+++..++.++.-+++|+++||.++|++-+|+|.+.........+.+++... . +. . +++..
T Consensus 37 ~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (448)
T PRK09848 37 DVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHSSKVVYAYLTY 116 (448)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCcchHHHHHHHHH
Confidence 3468998889999999999999999999999999988877667775554444444444333221 1 11 1 23334
Q ss_pred HHHHhhhccccchhHHHHH
Q 008482 451 ILVGVCYGSQWSLMPTIAS 469 (564)
Q Consensus 451 ~l~G~~~G~~~~~~P~ivs 469 (564)
++.+++|+....-+-++..
T Consensus 117 ~~~~~~~~~~~~~~~al~~ 135 (448)
T PRK09848 117 MGLGLCYSLVNIPYGSLAT 135 (448)
T ss_pred HHHHHHHHHhcccHhhhhh
Confidence 5677778776643334333
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.024 Score=62.56 Aligned_cols=143 Identities=19% Similarity=0.232 Sum_probs=111.6
Q ss_pred cCCCccchhHHHHHHHHHHHHhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHH--Hhc-CcchHHHHHHHHHhh
Q 008482 380 LGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLII--ASG-LPGALYAGSILVGVC 456 (564)
Q Consensus 380 ~g~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~R~~~l~~~~~l~~i~~ll~--~~~-~~~~l~~~~~l~G~~ 456 (564)
..+++.+.+...|.+..+..++.+-.|++.||++.| . .+....++.+++-++. +.. ....+.+.=++.|++
T Consensus 68 ~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r-----~-v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~ 141 (466)
T KOG2532|consen 68 YDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGAR-----R-VFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLG 141 (466)
T ss_pred ecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCch-----H-HHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHH
Confidence 356777889999999999999999999999999743 2 2444444445544442 221 222455666899999
Q ss_pred hccccchhHHHHHHhhccCchhhhhhhHhhhhhhHHHhhhhhhhhhhhhcccCCCCccccCCcccHHHHHHHHHHHHHHH
Q 008482 457 YGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSFFIMGSATLCGS 536 (564)
Q Consensus 457 ~G~~~~~~P~ivse~FG~k~fg~nyg~~~~a~~iG~~lf~~~l~g~iyD~~~~~~~~~C~G~~Cy~~af~i~~~l~v~a~ 536 (564)
+|..+..+..+++.+.-+++-++-.++++.+..+|+. ++.+++|.+=+...+ ....|++.+++.++-.
T Consensus 142 ~g~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v-~~mp~sg~lc~s~~G-----------W~sifY~~g~~g~i~~ 209 (466)
T KOG2532|consen 142 QGVLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTI-ITMPVSGLLCESSLG-----------WPSIFYVFGIVGLIWF 209 (466)
T ss_pred HhHHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHH-HHHHhHHHHhccCCC-----------CchHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999995 677789999998555 5899999988887766
Q ss_pred HHHH
Q 008482 537 LAAF 540 (564)
Q Consensus 537 vl~~ 540 (564)
++-.
T Consensus 210 ~~w~ 213 (466)
T KOG2532|consen 210 ILWF 213 (466)
T ss_pred HHHH
Confidence 4433
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.013 Score=63.70 Aligned_cols=153 Identities=12% Similarity=0.103 Sum_probs=88.0
Q ss_pred hhcCCCccchhHHHHHHHHHHHHhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHH-HHHhcC---cc---hHHHHH
Q 008482 378 GSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHL-IIASGL---PG---ALYAGS 450 (564)
Q Consensus 378 ~~~g~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~R~~~l~~~~~l~~i~~l-l~~~~~---~~---~l~~~~ 450 (564)
+..|.++..++...++..++.++.-++.|+++||...|++-+|+|.+.... ..+++.. ++.... .. .+++..
T Consensus 38 ~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~-~~~i~~~l~f~~p~~~~~~~~~~~~~~~ 116 (444)
T PRK09669 38 DVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAI-PFGVVCLLTFYTPDFGATGKIIYACVTY 116 (444)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHH-HHHHHHHHHHhCCCCCcchHHHHHHHHH
Confidence 457999989999999999999999999999999998888755676554333 3333332 222211 11 233334
Q ss_pred HHHHhhhccccchhHHHHHHhhcc-Cchhhhh----hhHhhhhhhHHHhhhhhhhhhhhhcccCCCCccccCCcccHHHH
Q 008482 451 ILVGVCYGSQWSLMPTIASEIFGV-LQMGTIF----NTITIANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSF 525 (564)
Q Consensus 451 ~l~G~~~G~~~~~~P~ivse~FG~-k~fg~ny----g~~~~a~~iG~~lf~~~l~g~iyD~~~~~~~~~C~G~~Cy~~af 525 (564)
++.+.+|.....-+-++.+|+.-. ++-++.. ....++..+++.+. .++...+-+. .. ...|+.++
T Consensus 117 ~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~-~pl~~~~~~~-~~--------~~g~~~~~ 186 (444)
T PRK09669 117 ILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIA-LPLVDILGKG-DE--------QKGYFYAM 186 (444)
T ss_pred HHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCCC-ch--------hhhHHHHH
Confidence 566777777666666777777621 2222222 22334444444322 2223322110 00 12467777
Q ss_pred HHHHHHHHHHHHHHHH
Q 008482 526 FIMGSATLCGSLAAFG 541 (564)
Q Consensus 526 ~i~~~l~v~a~vl~~~ 541 (564)
.+.++++++..+++.+
T Consensus 187 ~i~~ii~~v~~~~~~~ 202 (444)
T PRK09669 187 MVMGLLGVVLFFCCFF 202 (444)
T ss_pred HHHHHHHHHHHHHHhC
Confidence 7777666666544443
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.44 Score=50.91 Aligned_cols=124 Identities=17% Similarity=0.228 Sum_probs=76.6
Q ss_pred hhcCCCccchhHHHHHHHHHHHHhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHH-hcCcchHHHHHHHHHhh
Q 008482 378 GSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIA-SGLPGALYAGSILVGVC 456 (564)
Q Consensus 378 ~~~g~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~R~~~l~~~~~l~~i~~ll~~-~~~~~~l~~~~~l~G~~ 456 (564)
+-.|+++.+.+...+..++..+.-.+...-..|+.. + .-...+.....++.=..+++. ...+..+++++.+--++
T Consensus 290 ~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~---~-~~~a~l~~~l~~~vP~~llls~~~~~~~l~~~s~l~sf~ 365 (451)
T KOG2615|consen 290 GRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYK---G-NIKAVLLFSLLLIVPAFLLLSLARTPVVLYLGSTLKSFS 365 (451)
T ss_pred CccCCChhhheeeeehhhHHHHHHHHhccccccccc---c-chhhHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHHH
Confidence 446899999888888888877766666554444432 1 111122222222222223332 23455688888888888
Q ss_pred hccccchhHHHHHHhhccCchhhhhhhHhhhhhhHHHhhhhhhhhhhhhc
Q 008482 457 YGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDR 506 (564)
Q Consensus 457 ~G~~~~~~P~ivse~FG~k~fg~nyg~~~~a~~iG~~lf~~~l~g~iyD~ 506 (564)
--...+-.-.++..+-+...=|+.=|+.....+++=. +||.+.|.++.-
T Consensus 366 ~A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRa-iGPlv~g~i~~W 414 (451)
T KOG2615|consen 366 TASVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARA-IGPLVSGVIFSW 414 (451)
T ss_pred HHHhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHH-hhhhhhheeEEE
Confidence 7776666667777777777778888887665555553 466567777765
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.026 Score=58.66 Aligned_cols=115 Identities=13% Similarity=0.076 Sum_probs=74.5
Q ss_pred cHHHHh--hcCCCcchhhHHHHhhhhhcccc-ccchhhhccccCCCCCCCccchhhhcccCcHHHHHHHHHHHHHHHHHH
Q 008482 36 SPALKT--TQHYDQTTLDTVSVFKDIGANTG-TLSGVLYTYSTSDHSSHHPRQQRLTRLLGPWVVLLVGAIQCFAGYFLM 112 (564)
Q Consensus 36 s~~L~~--~lg~sq~~~~~i~~a~~vg~~~g-~~~G~l~d~~~~~~~~~~~~~~~~~~~~GP~~~~~iG~vl~~~Gy~~~ 112 (564)
..-+++ .+|++.++........-.+...| +.++. +.||+|+|.++.++.++..++..+.
T Consensus 164 ~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~------------------l~~r~g~~~~l~~~~~l~~~~~~l~ 225 (310)
T TIGR01272 164 VNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSA------------------VMPMISQGRYLAFNAFLAVLLSIGA 225 (310)
T ss_pred HHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHhCHHHHHHHHHHHHHHHHHHH
Confidence 344554 37899887775533333333332 33343 4555668888999988888887665
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHhhhcCCCCcceeeeehhhhhhhHHHHH
Q 008482 113 WASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFPTYSGTAVGIMKGFVGLSGAILI 177 (564)
Q Consensus 113 ~l~~~g~i~~~~~~~l~~~~~l~G~g~~~~~ta~l~t~~k~FP~~RG~a~Gl~~a~~GLsa~i~s 177 (564)
+.. .+ .+... ..++.|++.+..|........+.+|++.|.++++. .+-.+++++..
T Consensus 226 ~~~-~~------~~~~~-~~~l~g~~~s~i~P~~~s~a~~~~~~~~~~asai~-~~~~~Gg~i~P 281 (310)
T TIGR01272 226 ALT-HG------YVAMW-FVLALGLFNSIMFPTIFSLALNALGRHTSQGSGIL-CLAIVGGAIVP 281 (310)
T ss_pred HHc-CC------HHHHH-HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHH-HHHHhcchHHH
Confidence 432 11 11122 23356899999999999999999999988888885 44456666654
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.0043 Score=67.11 Aligned_cols=161 Identities=16% Similarity=0.145 Sum_probs=96.0
Q ss_pred HHHhh-cCCCccchhHHHHHHHHHHHHhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHhcCc----c-----
Q 008482 375 QIGGS-LGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIASGLP----G----- 444 (564)
Q Consensus 375 ~i~~~-~g~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~R~~~l~~~~~l~~i~~ll~~~~~~----~----- 444 (564)
++..+ +|.++...+....+..+++++--++.|++|||...|++-+||| +.....+.+++..++....| .
T Consensus 26 ~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~-~l~g~i~~~~~~~llf~~~p~~~~~~~~~~ 104 (428)
T PF13347_consen 26 YFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPW-ILIGAILLALSFFLLFSPPPAGLSFTAKLV 104 (428)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceE-eehhhHHHHHHHHHhhccccchhhhhhHHH
Confidence 44444 5899888889999999999999999999999888777745555 44444555555444332212 1
Q ss_pred hHHHHHHHHHhhhccccchhHHHHHHhhcc-CchhhhhhhHhhhhhhHHHhhhhhhhhhhhhcccCCCCccccCCcccHH
Q 008482 445 ALYAGSILVGVCYGSQWSLMPTIASEIFGV-LQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFML 523 (564)
Q Consensus 445 ~l~~~~~l~G~~~G~~~~~~P~ivse~FG~-k~fg~nyg~~~~a~~iG~~lf~~~l~g~iyD~~~~~~~~~C~G~~Cy~~ 523 (564)
.+.+..++..++|-....-+-++.+|.-.. ++-.+..+.-.....+|..+. ..+.+.+.+..++.+. .+=|+.
T Consensus 105 ~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~-~~~~~~l~~~~g~~~~-----~~~~~~ 178 (428)
T PF13347_consen 105 WLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLA-SFLAPILVSWFGGGDT-----SNGYRW 178 (428)
T ss_pred HHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHH-HHHhhhhhhhhccCcc-----chHHHH
Confidence 134445666777777776666777777643 334445555555555555322 2245555554443100 012666
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 008482 524 SFFIMGSATLCGSLAAFGL 542 (564)
Q Consensus 524 af~i~~~l~v~a~vl~~~l 542 (564)
...+.+++.++..+++...
T Consensus 179 ~~~v~~iv~~v~~~i~~~~ 197 (428)
T PF13347_consen 179 MALVLAIVGLVFFLITFFF 197 (428)
T ss_pred HHHHHHHHHHHHhhhhhhe
Confidence 6666666666655555443
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.63 Score=51.43 Aligned_cols=143 Identities=15% Similarity=0.091 Sum_probs=80.3
Q ss_pred chhHHHHHHHHHHHHhcCcc---cccccccHHHHhhcCCCcchhhHHHHhhhhhcc-ccccchhhhccccCCCCCCCccc
Q 008482 10 NTRWVSTVASIWIQCTSGSL---YTFSIYSPALKTTQHYDQTTLDTVSVFKDIGAN-TGTLSGVLYTYSTSDHSSHHPRQ 85 (564)
Q Consensus 10 ~~Rw~~l~a~~~i~l~~G~~---Y~fS~ys~~L~~~lg~sq~~~~~i~~a~~vg~~-~g~~~G~l~d~~~~~~~~~~~~~ 85 (564)
+.+|+++....+.++..+.. |.=|.|.-..+-..+=+.+..-.+..+..+|.. +.+..|.-..|.+
T Consensus 30 ~t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~---------- 99 (488)
T KOG2325|consen 30 KTNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTG---------- 99 (488)
T ss_pred CCchHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccC----------
Confidence 45787776666666655543 333443322221233333333344444555554 4556666555543
Q ss_pred hhhhcccCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhhhhhhhHHHHHH--HhhhcCCCCcceee
Q 008482 86 QRLTRLLGPWVVLLVGAIQCFAGYFLMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVT--SVRNFPTYSGTAVG 163 (564)
Q Consensus 86 ~~~~~~~GP~~~~~iG~vl~~~Gy~~~~l~~~g~i~~~~~~~l~~~~~l~G~g~~~~~ta~l~t--~~k~FP~~RG~a~G 163 (564)
--|+.+++|.+...+|-++ |+++..+.+ ..-++|..--++.|.|.+ +.+.+-+ +.++.|++|-+|.+
T Consensus 100 -------~~k~Pli~s~ii~~~g~ll-Y~~l~~~~~-~~~y~mL~~R~l~Gvg~~--n~a~lR~Y~a~~s~~~dR~rA~a 168 (488)
T KOG2325|consen 100 -------SVKKPLIVSFLIAIIGNLL-YLALAYVPN-GVKYLMLVARILTGVGVG--NFAVLRAYIADASTVEDRPRAFA 168 (488)
T ss_pred -------CcccCHHHHHHHHHHHHHH-HHHHHhccc-chHHHHHHHHHHcCcCcc--cHHHHHHHHHhccCccchHHHHH
Confidence 1377899999999999887 444444433 133445555556677765 4455543 55668988887766
Q ss_pred eehhhhhhhH
Q 008482 164 IMKGFVGLSG 173 (564)
Q Consensus 164 l~~a~~GLsa 173 (564)
....++-+|-
T Consensus 169 ~~~~~~vlg~ 178 (488)
T KOG2325|consen 169 ATSGGFVLGI 178 (488)
T ss_pred HhhhHHHHHH
Confidence 6555444443
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.077 Score=57.76 Aligned_cols=157 Identities=19% Similarity=0.174 Sum_probs=92.2
Q ss_pred eecchhHHHhhcC---------CCccchhHHHHHHHHHHHHhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHH
Q 008482 369 TVNNISQIGGSLG---------YSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIA 439 (564)
Q Consensus 369 ~i~n~~~i~~~~g---------~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~R~~~l~~~~~l~~i~~ll~~ 439 (564)
.||-+.+|..-+. +++...+..-..-.+.|.+|+++.||+.|+++||+- ....++++.++-.+..
T Consensus 59 ~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~v------YG~~liImIi~t~~~~ 132 (538)
T KOG0252|consen 59 SISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKKV------YGKELIIMIICSALSG 132 (538)
T ss_pred hHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhh------hhHHHHHHHHHHHHhc
Confidence 4555566665431 444445555566778889999999999999976654 4444444444433222
Q ss_pred ----hcCcc----hHHHHHHHHHhhhccccchhHHHHHHhhccCchhhhhhhHhhhhhhHHHhhhhh---hhhhhhhccc
Q 008482 440 ----SGLPG----ALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVR---VVGYIYDREA 508 (564)
Q Consensus 440 ----~~~~~----~l~~~~~l~G~~~G~~~~~~P~ivse~FG~k~fg~nyg~~~~a~~iG~~lf~~~---l~g~iyD~~~ 508 (564)
.+.|. .|..-=.+.|++-|+-..+-.+++||.=-.|.=|+.-+.++.....|-. +|.. +.-..+++
T Consensus 133 ~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~Gil-aG~ivt~Iv~~~fe~-- 209 (538)
T KOG0252|consen 133 LSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGIL-AGGIVALIVSAIFEK-- 209 (538)
T ss_pred cCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEecchhHh-hccHHHHHHHHHHhc--
Confidence 22331 1333347889999999999999999987666666666655543333321 1211 11123333
Q ss_pred CCCCccccCCcccHHHHHHHHHHHHHHHHHH
Q 008482 509 SGEGNKCTGTHCFMLSFFIMGSATLCGSLAA 539 (564)
Q Consensus 509 ~~~~~~C~G~~Cy~~af~i~~~l~v~a~vl~ 539 (564)
.|.++.||...=.++-....+|++.+
T Consensus 210 -----~~~~~~~~~~ld~vWRl~~glg~vpa 235 (538)
T KOG0252|consen 210 -----IFNGPSTYPHLDGVWRIIFGLGAVPA 235 (538)
T ss_pred -----cCCCCCCchHHHHHHHHHHHHHHHHH
Confidence 34456677665555544444444433
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.034 Score=61.15 Aligned_cols=92 Identities=14% Similarity=0.137 Sum_probs=58.4
Q ss_pred hcCCCccchhHHHHHHHHHHHHhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHH-HHhc-Cc-c--h--HHHHHH
Q 008482 379 SLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLI-IASG-LP-G--A--LYAGSI 451 (564)
Q Consensus 379 ~~g~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~R~~~l~~~~~l~~i~~ll-~~~~-~~-~--~--l~~~~~ 451 (564)
.+|.++...+....+..++.++.-.++|+++||...|++-+|||.+.. ....++++.+ +... .+ . . +.+..+
T Consensus 36 v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g-~i~~~i~~~llf~~p~~~~~~~~~~~~~~~~ 114 (473)
T PRK10429 36 VVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIG-TLANSVVLFLLFSAHLFEGTAQYVFVCVTYI 114 (473)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhh-hHHHHHHHHHHHcCCCCCccHHHHHHHHHHH
Confidence 358998888899999999999999999999999877777557765544 3444444333 3221 11 1 1 222334
Q ss_pred HHHhhhccccchhHHHHHHh
Q 008482 452 LVGVCYGSQWSLMPTIASEI 471 (564)
Q Consensus 452 l~G~~~G~~~~~~P~ivse~ 471 (564)
+.+++|-....-+-++.+|+
T Consensus 115 l~~~~~t~~~ip~~al~~~l 134 (473)
T PRK10429 115 LWGMTYTIMDIPFWSLVPTL 134 (473)
T ss_pred HHHHHHHHHcchHHhhhHHh
Confidence 55666655444455555554
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.00061 Score=73.68 Aligned_cols=101 Identities=24% Similarity=0.300 Sum_probs=79.3
Q ss_pred hhHHHHHHHHHHHHhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHhc----CcchHHHHHHHHHhhhccccc
Q 008482 387 TSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIASG----LPGALYAGSILVGVCYGSQWS 462 (564)
Q Consensus 387 aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~R~~~l~~~~~l~~i~~ll~~~~----~~~~l~~~~~l~G~~~G~~~~ 462 (564)
.....+...++..+|-++.|+++||+|||+ .+.+...+..++.++.... ....+.++-.+.|++.|+...
T Consensus 48 ~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~ 121 (451)
T PF00083_consen 48 SSLLTSSFFIGAIVGALIFGFLADRYGRKP------ALIISALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYV 121 (451)
T ss_pred HHHHHHHHHhhhcccccccccccccccccc------cccccccccccccccccccccccccccccccccccccccccccc
Confidence 456788899999999999999999997654 3555666666666554433 344567777899999999999
Q ss_pred hhHHHHHHhhccCchhhhhhhHhhhhhhHHH
Q 008482 463 LMPTIASEIFGVLQMGTIFNTITIANPVGSY 493 (564)
Q Consensus 463 ~~P~ivse~FG~k~fg~nyg~~~~a~~iG~~ 493 (564)
+.|..+.|.=..|+=|..-.+..++..+|..
T Consensus 122 ~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~ 152 (451)
T PF00083_consen 122 VSPIYISEIAPPKHRGFLSSLFQLFWALGIL 152 (451)
T ss_pred ccccccccccccccccccccccccccccccc
Confidence 9999999999888888777777777777764
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.13 Score=52.10 Aligned_cols=139 Identities=19% Similarity=0.224 Sum_probs=76.4
Q ss_pred HHhhhhchhheec--chhHHHhhcCCCccchhHHHHHHHHHHHHhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHH
Q 008482 359 MACGMGSGLATVN--NISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHL 436 (564)
Q Consensus 359 ~~~~~g~gl~~i~--n~~~i~~~~g~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~R~~~l~~~~~l~~i~~l 436 (564)
+.+...+|..+.. =.+++.+.+|++.++...+-..-.++..+| +..|.+.|+.+ ....+.+..+...++..
T Consensus 9 ~~v~~~~Gt~Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~g------p~~~l~iG~~~~~~GY~ 81 (250)
T PF06813_consen 9 IWVQLCSGTTYTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRFG------PWVVLLIGAVLGFVGYG 81 (250)
T ss_pred HHHHHhcCcccchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhcc------hHHHHHHHHHHHHHHHH
Confidence 3333444444332 345555678999877777766777777777 88999999984 22334555666666655
Q ss_pred HH--Hh-cC-c-chHHHHHHHHHhhh-ccccchhHHHH--HHhhccCchhhhhhhHhhhhhhHHHhhhhhhhhhhhhc
Q 008482 437 II--AS-GL-P-GALYAGSILVGVCY-GSQWSLMPTIA--SEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDR 506 (564)
Q Consensus 437 l~--~~-~~-~-~~l~~~~~l~G~~~-G~~~~~~P~iv--se~FG~k~fg~nyg~~~~a~~iG~~lf~~~l~g~iyD~ 506 (564)
++ .. +. + ..++...+...++. |..|--..+++ .+.| ++|=|+.=|++-...++++-+|+. ++..+|..
T Consensus 82 ~~~l~~~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NF-P~~RG~vvgilk~~~GLSaai~t~-i~~~~f~~ 157 (250)
T PF06813_consen 82 LLWLAVSGRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNF-PRSRGTVVGILKGFFGLSAAIFTQ-IYSAFFGD 157 (250)
T ss_pred HHHHHHhCccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhC-ccccCceehhhhHHHHhHHHHHHH-HHHHHcCC
Confidence 43 22 11 1 23444443333332 22222223332 3555 355566666666677777766655 45555554
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=95.26 E-value=1.1 Score=48.46 Aligned_cols=152 Identities=15% Similarity=0.103 Sum_probs=85.3
Q ss_pred HHHHhhcH--HHHHHHHHHHhhhhchhheecchhHHH-hhc---CCCccchhHHHHHHHHHHHHhhhhhhhhhhhhhhcc
Q 008482 343 LLQAICTL--EFWILSFAMACGMGSGLATVNNISQIG-GSL---GYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVK 416 (564)
Q Consensus 343 ~~~~l~t~--~Fwll~~~~~~~~g~gl~~i~n~~~i~-~~~---g~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~ 416 (564)
.+++.+++ ..|-+|+++... |...+.|-.|.+ ++. .....-....-.+..+.++++-+..|++..+..+
T Consensus 240 ~~~~y~~~~ll~WSlWWa~atc---gy~qv~nYvQ~LW~~v~~~~~~~vYNG~VeA~~tllgA~~al~~g~v~~~w~~-- 314 (412)
T PF01770_consen 240 FKSCYSNPRLLLWSLWWAFATC---GYYQVINYVQSLWDTVPPSDNESVYNGAVEAASTLLGAIAALLAGYVKVNWDR-- 314 (412)
T ss_pred HHHHhcCchHHHHHHHHHHHHh---HHHHHHHHHHHHHHhcCCCCCCcccchHHHHHHHHHHHHHHHHHhHhhcchHH--
Confidence 34555554 578899887653 333333333433 333 1111112344555666777888888888433321
Q ss_pred cCchhHHHHHHHHHHHHHHHHHHhc-CcchHHHHHHHHHhhhccccchhHHHHHHhhccCchhhhhhhHh-hhhhhHHHh
Q 008482 417 EWARPLFMVITLAAMSIGHLIIASG-LPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTIT-IANPVGSYI 494 (564)
Q Consensus 417 ~~~R~~~l~~~~~l~~i~~ll~~~~-~~~~l~~~~~l~G~~~G~~~~~~P~ivse~FG~k~fg~nyg~~~-~a~~iG~~l 494 (564)
.....+....++.+...+++... ....-|.+-++++..|-...++.-.-++..--.+.||-.+|+=+ ++..+-++
T Consensus 315 --~~~l~l~~~S~l~a~~L~lm~~t~~Iwv~Y~~yIif~~~y~fliTiA~~qIA~~l~~e~yaLVFGiNtf~Al~LQti- 391 (412)
T PF01770_consen 315 --WGELALGVFSLLQAGLLFLMSFTGNIWVCYAGYIIFRSLYMFLITIASFQIAKNLSEERYALVFGINTFVALVLQTI- 391 (412)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccceeeeeeeHHHHHHHHHHh-
Confidence 12334444555555444444332 23346667788888888888887777777777777777777643 44444443
Q ss_pred hhhhhhhhhhhc
Q 008482 495 FSVRVVGYIYDR 506 (564)
Q Consensus 495 f~~~l~g~iyD~ 506 (564)
+--.+.|.
T Consensus 392 ----lT~iV~d~ 399 (412)
T PF01770_consen 392 ----LTLIVVDK 399 (412)
T ss_pred ----eEEEEEcC
Confidence 34445553
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.15 Score=56.33 Aligned_cols=80 Identities=23% Similarity=0.377 Sum_probs=60.2
Q ss_pred hHHHHHHHHHHHHhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHH--HH--hcCcchHHHHHHHHHhhhccccch
Q 008482 388 SSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLI--IA--SGLPGALYAGSILVGVCYGSQWSL 463 (564)
Q Consensus 388 a~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~R~~~l~~~~~l~~i~~ll--~~--~~~~~~l~~~~~l~G~~~G~~~~~ 463 (564)
+..||++.+++++|-+..|++.|++||| ..+.+..++..++.++ +. ......+.++-.+.|++-|...+.
T Consensus 63 S~~vs~f~iG~~~Gs~~~~~la~~~GRK------~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~ 136 (485)
T KOG0569|consen 63 SLIVSIFFIGGMIGSFSSGLLADRFGRK------NALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGL 136 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcch------HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHH
Confidence 5789999999999999999999999765 3344433333333222 22 334446888899999999999999
Q ss_pred hHHHHHHhhc
Q 008482 464 MPTIASEIFG 473 (564)
Q Consensus 464 ~P~ivse~FG 473 (564)
.|..+.|.=-
T Consensus 137 ~pmyl~E~sP 146 (485)
T KOG0569|consen 137 VPMYLTEISP 146 (485)
T ss_pred HHHHHhhcCh
Confidence 9999999853
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.02 E-value=0.84 Score=50.43 Aligned_cols=125 Identities=18% Similarity=0.197 Sum_probs=86.3
Q ss_pred cCCCccchhHHHHHHHHHHHHhhhhhh-hhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHhhhc
Q 008482 380 LGYSSFETSSLISLWSIWNFLGRFGAG-YVSDYFLHVKEWARPLFMVITLAAMSIGHLIIASGLPGALYAGSILVGVCYG 458 (564)
Q Consensus 380 ~g~~~~~aa~~Vsl~si~n~~GRl~~G-~lsD~l~~~~~~~R~~~l~~~~~l~~i~~ll~~~~~~~~l~~~~~l~G~~~G 458 (564)
.|.++.+.+.+.++.++.+..+-++.. .++-.++. .+ .+.+.+....+..++.++............+..--+
T Consensus 272 f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~----~~--~i~lGl~~~~~~~~~~af~~~~w~~~~~~v~~~~~~ 345 (463)
T KOG2816|consen 272 FGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGE----KR--LISLGLLSEFLQLLLFAFATETWMMFAAGVVVALAG 345 (463)
T ss_pred cCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hh--HhhHHHHHHHHHHHHHHHhccchhhhHHHHHHHhhc
Confidence 477777788889999999998888877 55544432 22 455556666666666665543334334444455555
Q ss_pred cccchhHHHHHHhhccCchhhhhhhHhhhhhhHHHhhhhhhhhhhhhcccCCC
Q 008482 459 SQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASGE 511 (564)
Q Consensus 459 ~~~~~~P~ivse~FG~k~fg~nyg~~~~a~~iG~~lf~~~l~g~iyD~~~~~~ 511 (564)
..+...-++++.+=+.+..|++++++...-.+.+. +++.+++.+|-.+.+..
T Consensus 346 ~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~-~~~~~~~~i~~~t~~~~ 397 (463)
T KOG2816|consen 346 IVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGV-VSPALYGNIFALTLDDL 397 (463)
T ss_pred chhHHHHhHHHhhcccccccchhhHHHHHHHHhhh-hhHHHHHHHHHHHHHhc
Confidence 66677778888888899999999999877777774 45567888887766543
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.90 E-value=0.27 Score=54.12 Aligned_cols=93 Identities=14% Similarity=0.127 Sum_probs=67.9
Q ss_pred hhcCCCccchhHHHHHHHHHHHHhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHhcC---cc-h--HHHHHH
Q 008482 378 GSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIASGL---PG-A--LYAGSI 451 (564)
Q Consensus 378 ~~~g~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~R~~~l~~~~~l~~i~~ll~~~~~---~~-~--l~~~~~ 451 (564)
...|.++..++.+..+--++.++.=.+.|+++||..+|++-.|||.+........+..+++.... .. . .++--+
T Consensus 41 dv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~~ya~vtY~ 120 (467)
T COG2211 41 DVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKLIYALVTYM 120 (467)
T ss_pred cccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcchHHHHHHHH
Confidence 34689998899999999999999999999999999999987889888777766666666554321 11 2 333447
Q ss_pred HHHhhhccccchhHHHHHH
Q 008482 452 LVGVCYGSQWSLMPTIASE 470 (564)
Q Consensus 452 l~G~~~G~~~~~~P~ivse 470 (564)
+.+++|-....-+-++.+|
T Consensus 121 l~~l~YT~vniPy~al~~~ 139 (467)
T COG2211 121 LLGLGYTLVNIPYGALGPE 139 (467)
T ss_pred HHHHHHHheeCchhhcchh
Confidence 7788887765444444443
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=94.82 E-value=1.9 Score=45.80 Aligned_cols=87 Identities=15% Similarity=0.137 Sum_probs=64.6
Q ss_pred cccccccccHHHHhhcCCCcchhhHHHHhhhhhc-cccccchhhhccccCCCCCCCccchhhhcccCcHHHHHHHHHHHH
Q 008482 28 SLYTFSIYSPALKTTQHYDQTTLDTVSVFKDIGA-NTGTLSGVLYTYSTSDHSSHHPRQQRLTRLLGPWVVLLVGAIQCF 106 (564)
Q Consensus 28 ~~Y~fS~ys~~L~~~lg~sq~~~~~i~~a~~vg~-~~g~~~G~l~d~~~~~~~~~~~~~~~~~~~~GP~~~~~iG~vl~~ 106 (564)
..|.|.+| +++|++..|++.+-.++.... .+|.+.|.+.||+| .|..+++-+++..
T Consensus 54 GpY~Y~LY-----~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~G------------------rk~~cl~~cily~ 110 (354)
T PF05631_consen 54 GPYLYALY-----ESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYG------------------RKKACLLFCILYS 110 (354)
T ss_pred cchhHHHH-----HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC------------------chHHHHHHHHHHH
Confidence 56888877 369999999997755555555 45888888888765 9999999999988
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhhhhhhhHH
Q 008482 107 AGYFLMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTA 145 (564)
Q Consensus 107 ~Gy~~~~l~~~g~i~~~~~~~l~~~~~l~G~g~~~~~ta 145 (564)
+..+. .. . +.++.+.+=-+++|.+.+..+++
T Consensus 111 ~scl~-----k~-~--~~~~~L~~GRvlgGiaTSLLfS~ 141 (354)
T PF05631_consen 111 LSCLT-----KH-S--SNYPVLLLGRVLGGIATSLLFSA 141 (354)
T ss_pred HHHHH-----Hh-c--cccHHHHHHHHHHHHHHHHHHHH
Confidence 88875 22 2 24666666668889888877664
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=94.63 E-value=0.2 Score=53.83 Aligned_cols=130 Identities=17% Similarity=0.109 Sum_probs=82.8
Q ss_pred HHhhcCCCccchhHHHHHHHHHHHHhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHH-------HHh-----cCc
Q 008482 376 IGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLI-------IAS-----GLP 443 (564)
Q Consensus 376 i~~~~g~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~R~~~l~~~~~l~~i~~ll-------~~~-----~~~ 443 (564)
+..+++.+....+.++++=-+. ..-|..+|+.||+-...++++|...+..-.++++.+..+ +.. ..+
T Consensus 6 MIvEL~vpA~lv~~lval~~~~-ap~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~ 84 (403)
T PF03209_consen 6 MIVELGVPAWLVALLVALHYLV-APLRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGP 84 (403)
T ss_pred HHHHhccHHHHHHHHHHHHHHH-HHHHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccc
Confidence 3456777765555666554444 367999999999987667777776555555444433222 222 002
Q ss_pred c-----hHHHHHHHHHhhhccccchhHHHHHHhhccCchhhhhhhHhhhhhhHHHhhhhhhhhhhhhcc
Q 008482 444 G-----ALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDRE 507 (564)
Q Consensus 444 ~-----~l~~~~~l~G~~~G~~~~~~P~ivse~FG~k~fg~nyg~~~~a~~iG~~lf~~~l~g~iyD~~ 507 (564)
. ...++..++|++.+..-+.+-++.+|.=.+|+=++.=+++.+.-.+|-. .+..++|.+.|..
T Consensus 85 ~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~i-v~ai~~g~lL~~~ 152 (403)
T PF03209_consen 85 FWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGII-VSAIVFGRLLDPF 152 (403)
T ss_pred cHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHH-HHHHHHHHHcccc
Confidence 1 2344567788888888888999999999988888777766544444432 2333577666653
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=94.57 E-value=0.63 Score=49.30 Aligned_cols=147 Identities=16% Similarity=0.043 Sum_probs=91.6
Q ss_pred HHHhhcCCCccchhHHHHHHHHHHHHhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHH
Q 008482 375 QIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIASGLPGALYAGSILVG 454 (564)
Q Consensus 375 ~i~~~~g~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~R~~~l~~~~~l~~i~~ll~~~~~~~~l~~~~~l~G 454 (564)
...++.|++..+.+.+-..--..+.+-..+.|.+.||+|||+. ..+.+++-++++++-.......|+++-++-|
T Consensus 59 ~LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~------cl~~cily~~scl~k~~~~~~~L~~GRvlgG 132 (354)
T PF05631_consen 59 ALYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKA------CLLFCILYSLSCLTKHSSNYPVLLLGRVLGG 132 (354)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHH------HHHHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 4556678887776665555555666667788899999976543 3444555566665544444456888899999
Q ss_pred hhhccccchhHHHHHHhhccCchhhh-----hhhHh-hhhhhHHHhhhhhhhhhhhhcccCCCCccccCCcccHHHHHHH
Q 008482 455 VCYGSQWSLMPTIASEIFGVLQMGTI-----FNTIT-IANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSFFIM 528 (564)
Q Consensus 455 ~~~G~~~~~~P~ivse~FG~k~fg~n-----yg~~~-~a~~iG~~lf~~~l~g~iyD~~~~~~~~~C~G~~Cy~~af~i~ 528 (564)
++.-..++.+=+-.-.-...+.|... |+.+. +.+.+-.+ .+..++-.+-|..+.. -..+|..+
T Consensus 133 iaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI-~aGv~a~~l~~~~~~g----------~vaPF~~a 201 (354)
T PF05631_consen 133 IATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAI-GAGVVANVLADWFGFG----------PVAPFDAA 201 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHH-HHhHHHHHHHHHhCCC----------CcchHHHH
Confidence 99999998887654333344555444 44444 44444443 2332333444544321 26788888
Q ss_pred HHHHHHHHHH
Q 008482 529 GSATLCGSLA 538 (564)
Q Consensus 529 ~~l~v~a~vl 538 (564)
..+++++.++
T Consensus 202 ~~~l~~~~~~ 211 (354)
T PF05631_consen 202 IVLLAVAAVL 211 (354)
T ss_pred HHHHHHHHHH
Confidence 8888777654
|
|
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.14 E-value=0.54 Score=51.72 Aligned_cols=152 Identities=19% Similarity=0.234 Sum_probs=108.3
Q ss_pred chhHHHHHHHHHHHHhcCcccccccccHHHHhh--cCCCcchhhHH-HHhhhhhccc-cccchhhhccccCCCCCCCccc
Q 008482 10 NTRWVSTVASIWIQCTSGSLYTFSIYSPALKTT--QHYDQTTLDTV-SVFKDIGANT-GTLSGVLYTYSTSDHSSHHPRQ 85 (564)
Q Consensus 10 ~~Rw~~l~a~~~i~l~~G~~Y~fS~ys~~L~~~--lg~sq~~~~~i-~~a~~vg~~~-g~~~G~l~d~~~~~~~~~~~~~ 85 (564)
.++++.++.=...-.-.-..|=.++|...+.-. .+.+...+..+ +....+|.+. |++.+.+.+|.
T Consensus 238 ~~~~ml~L~~~f~~tG~~~Sf~~~iypt~i~ft~~~~~n~~~~~ai~~~~~g~g~v~~g~~~~~l~~ri----------- 306 (461)
T KOG3098|consen 238 KTPKMLLLFPFFFYTGLETSFWISIYPTCISFTRKLGSNTTYLIAIYSIGIGLGEVIGGLDFSILSKRI----------- 306 (461)
T ss_pred cCHhHHHHHHHHHHHHHHHHHHHhccchhhhhhhhccCcchhHHHHHHHHHhHHHHHHHHHHHHHhhhh-----------
Confidence 344444333333333333556678888888754 44455555433 5555666665 56666666664
Q ss_pred hhhhcccCcHHHHHHHHHHHHHHHHHHHHHHhcCCCC-----------CCHHHHHHHHHHHhhhhhhhhHHHHHHHhhhc
Q 008482 86 QRLTRLLGPWVVLLVGAIQCFAGYFLMWASVVGLIPR-----------PPVPVMCLFMLFAAHGMTFFNTADVVTSVRNF 154 (564)
Q Consensus 86 ~~~~~~~GP~~~~~iG~vl~~~Gy~~~~l~~~g~i~~-----------~~~~~l~~~~~l~G~g~~~~~ta~l~t~~k~F 154 (564)
|++|.++++.+|.+++.+++.+..+..-...|. +++.+....+++.|.|.++.++...+.+..-+
T Consensus 307 ----r~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~ 382 (461)
T KOG3098|consen 307 ----RGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFGDACFNTQRYVIIALLY 382 (461)
T ss_pred ----hhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 588999999999999999999987776544320 12444556788889999999999999999999
Q ss_pred CCCCcceeeeehhhhhhhHHHH
Q 008482 155 PTYSGTAVGIMKGFVGLSGAIL 176 (564)
Q Consensus 155 P~~RG~a~Gl~~a~~GLsa~i~ 176 (564)
|++|-.+-.+.+-+.++.+.+.
T Consensus 383 ~~~~~~~fsi~kfyq~~~s~v~ 404 (461)
T KOG3098|consen 383 PDDRAQAFSLFKFYQSVASCVA 404 (461)
T ss_pred cCchHHHHHHHHHHHHHHHHHH
Confidence 9999999999888888888664
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=92.71 E-value=1.1 Score=43.52 Aligned_cols=114 Identities=20% Similarity=0.264 Sum_probs=73.6
Q ss_pred chhHHHHHHHHHHHHhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHH-hcC--cchHHHHHHHHHhhhccccc
Q 008482 386 ETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIA-SGL--PGALYAGSILVGVCYGSQWS 462 (564)
Q Consensus 386 ~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~R~~~l~~~~~l~~i~~ll~~-~~~--~~~l~~~~~l~G~~~G~~~~ 462 (564)
......+...+....+.+.+|.++||.++| |. +........++.++.. ... ...+.+...+.|++.|....
T Consensus 40 ~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~----~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 113 (338)
T COG0477 40 LYGLLLSAFFLGYAIGSLLAGPLGDRYGRR----KV--LIIGLLLFLLGTLLLALAPNVGLALLLILRLLQGLGGGGLLP 113 (338)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhccccccch----HH--HHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhhhHHHHH
Confidence 467888889999999999999999999543 22 2222221222222222 111 22345555558999999999
Q ss_pred hhHHHHHHhhcc-CchhhhhhhHhh-hhhhHHHhhhhhhhhhhhhc
Q 008482 463 LMPTIASEIFGV-LQMGTIFNTITI-ANPVGSYIFSVRVVGYIYDR 506 (564)
Q Consensus 463 ~~P~ivse~FG~-k~fg~nyg~~~~-a~~iG~~lf~~~l~g~iyD~ 506 (564)
....+++|.+.. ++.+...+.... ...+|.. +++.+.+.+.+.
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 158 (338)
T COG0477 114 VASALLSEWFPEATERGLAVGLVTLGAGALGLA-LGPLLAGLLLGA 158 (338)
T ss_pred HHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 999999999986 567777777666 3445543 444456666655
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=92.70 E-value=1.2 Score=48.95 Aligned_cols=94 Identities=11% Similarity=-0.030 Sum_probs=61.3
Q ss_pred hhcCCCccchhHHHHHHHHHHHHhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHhcC--cc--h--HHHHHH
Q 008482 378 GSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIASGL--PG--A--LYAGSI 451 (564)
Q Consensus 378 ~~~g~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~R~~~l~~~~~l~~i~~ll~~~~~--~~--~--l~~~~~ 451 (564)
+..|.++..++....+.-++.++-=.+.|+++||...|++-.|||.+.....+.....+++.... .. . +++..+
T Consensus 38 ~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y~~~~~~ 117 (460)
T PRK11462 38 DIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIYAAITYT 117 (460)
T ss_pred HhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHH
Confidence 44689988889999999999999999999999999888886778766544333332222332211 11 1 233345
Q ss_pred HHHhhhccccchhHHHHHHh
Q 008482 452 LVGVCYGSQWSLMPTIASEI 471 (564)
Q Consensus 452 l~G~~~G~~~~~~P~ivse~ 471 (564)
+..++|-..-.-+-++.+|.
T Consensus 118 ~~~~~~t~~~ipy~al~~~l 137 (460)
T PRK11462 118 LLTLLYTVVNIPYCALGGVI 137 (460)
T ss_pred HHHHHHHHHhccHHHHHHHh
Confidence 56666666555555555554
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=91.73 E-value=3.2 Score=46.10 Aligned_cols=138 Identities=17% Similarity=0.095 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHhcCcccccccccHHHHhhcCCCcchhhHHHHhhhhhccc-cccchhhhccccCCCCCCCccchhhhccc
Q 008482 14 VSTVASIWIQCTSGSLYTFSIYSPALKTTQHYDQTTLDTVSVFKDIGANT-GTLSGVLYTYSTSDHSSHHPRQQRLTRLL 92 (564)
Q Consensus 14 ~~l~a~~~i~l~~G~~Y~fS~ys~~L~~~lg~sq~~~~~i~~a~~vg~~~-g~~~G~l~d~~~~~~~~~~~~~~~~~~~~ 92 (564)
.-|++-++.+-...+ ..+...--.++.+|++++|+..+....++.... .+..|++.||+|
T Consensus 285 ~fLia~~l~~dg~~t--i~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g----------------- 345 (477)
T PF11700_consen 285 LFLIAYFLYSDGVNT--IISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFG----------------- 345 (477)
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----------------
Confidence 345554544433333 333444446678999999999887777776665 356676767664
Q ss_pred CcH--HHHHHHHHHH----HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHhhhcCCCCcceeeeeh
Q 008482 93 GPW--VVLLVGAIQC----FAGYFLMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFPTYSGTAVGIMK 166 (564)
Q Consensus 93 GP~--~~~~iG~vl~----~~Gy~~~~l~~~g~i~~~~~~~l~~~~~l~G~g~~~~~ta~l~t~~k~FP~~RG~a~Gl~~ 166 (564)
|| .++++.-++. ..|++.++.. .+...+-|.+..++++.|...|..+.++=..-.|-=|+.|= +---
T Consensus 346 -~k~~~~l~~~l~~~~~i~~~g~~G~~~~---~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e---~efF 418 (477)
T PF11700_consen 346 -PKTKRTLLISLILWIIIPLYGLFGFWPS---FFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGRE---AEFF 418 (477)
T ss_pred -CchhHHHHHHHHHHHHHHHHHHHHhhhc---ccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchh---hHHH
Confidence 77 5555544333 2333333322 22223457788899999999999999988888888886443 3344
Q ss_pred hhhhhhHHHHH
Q 008482 167 GFVGLSGAILI 177 (564)
Q Consensus 167 a~~GLsa~i~s 177 (564)
+.|++++-.-+
T Consensus 419 gly~i~gk~ss 429 (477)
T PF11700_consen 419 GLYAITGKASS 429 (477)
T ss_pred HHHHHHHHHHH
Confidence 55555554443
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=91.40 E-value=0.75 Score=48.84 Aligned_cols=104 Identities=20% Similarity=0.290 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHHHHH--HhcC--c------chHHHHHHHHHhhhccccchhHHHHHHhhccCc---hhhhhhhHhhhhh
Q 008482 423 FMVITLAAMSIGHLII--ASGL--P------GALYAGSILVGVCYGSQWSLMPTIASEIFGVLQ---MGTIFNTITIANP 489 (564)
Q Consensus 423 ~l~~~~~l~~i~~ll~--~~~~--~------~~l~~~~~l~G~~~G~~~~~~P~ivse~FG~k~---fg~nyg~~~~a~~ 489 (564)
++.+..++..+|++++ +... . ..++++-.+++++.|+.=+-.+++.+|.|-.++ --+-|++.+.+..
T Consensus 3 tI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~in 82 (372)
T PF00854_consen 3 TILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGIN 82 (372)
T ss_dssp HHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHHh
Confidence 4556677777787763 2111 1 358889999999999999999999999997552 3344567778888
Q ss_pred hHHHhhhhhhhhhhhhcccCCCCccccCCcccHHHHHHHHHHHHHHHHHH
Q 008482 490 VGSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSFFIMGSATLCGSLAA 539 (564)
Q Consensus 490 iG~~lf~~~l~g~iyD~~~~~~~~~C~G~~Cy~~af~i~~~l~v~a~vl~ 539 (564)
+|+. ++..+.+++-|+. +|..+|.+..+..++++++-
T Consensus 83 ~G~~-~~~~~~~~i~~~~------------~~~~~f~i~~~~~~~~~~~f 119 (372)
T PF00854_consen 83 IGSL-FSPTLVPYIQQNY------------GWFLGFGIPAIGMLLALIVF 119 (372)
T ss_dssp HHHH-HHHHCCCHHHHCS-------------HHHHHHHHHHHHHHHHHHH
T ss_pred hhhH-hhcccchhhcccc------------chhhhhhHHHHHHHHHHHHH
Confidence 8885 5666778887764 48999998888877777433
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=91.35 E-value=0.82 Score=49.94 Aligned_cols=152 Identities=20% Similarity=0.147 Sum_probs=81.6
Q ss_pred hhcCCCccchhHHHHHHHHHHHHhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHH--hc---CcchHHHHHHH
Q 008482 378 GSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIA--SG---LPGALYAGSIL 452 (564)
Q Consensus 378 ~~~g~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~R~~~l~~~~~l~~i~~ll~~--~~---~~~~l~~~~~l 452 (564)
+++|.++++.+.+.++.++= -.-+.++|.+||-+- -++.+|.+.+.+..++.+++.+.++ .. ......+...+
T Consensus 18 ~~l~ls~~~~~~~~~~~~lP-w~~Kp~~g~lsD~~p-i~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~l 95 (433)
T PF03092_consen 18 DDLGLSPAQLQRLSSLASLP-WSIKPLYGLLSDSFP-IFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAIAVVLLFL 95 (433)
T ss_pred HHcCCCHHHHHHHHHHHhCc-hHHhhhHHhhccccc-ccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHH
Confidence 45888876655544444432 267999999999984 2333555556555555544333322 11 11223333444
Q ss_pred HHhhhccccchhHHHHHHhhccC--chhhhhhhHhhhhhhHHHhhhhhhhhhhhhcccCCCCccccCCcccHHHHHHHHH
Q 008482 453 VGVCYGSQWSLMPTIASEIFGVL--QMGTIFNTITIANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSFFIMGS 530 (564)
Q Consensus 453 ~G~~~G~~~~~~P~ivse~FG~k--~fg~nyg~~~~a~~iG~~lf~~~l~g~iyD~~~~~~~~~C~G~~Cy~~af~i~~~ 530 (564)
..+++-..=.+.=+++.|.=-.+ .-|.+=.++...-.+|++ ++..+.|.++|..+ ++..|.+.+.
T Consensus 96 a~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~l-v~~~l~G~l~~~~~------------~~~~f~i~~~ 162 (433)
T PF03092_consen 96 ASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSL-VGSLLSGPLLDSFG------------PQGVFLISAA 162 (433)
T ss_pred HHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHH-HHHHhhhhhhhcCC------------CeEEehHHHH
Confidence 45555444444555666653111 112222233333444443 23346788888765 4677888877
Q ss_pred HHHHHHHHHHHHHH
Q 008482 531 ATLCGSLAAFGLFL 544 (564)
Q Consensus 531 l~v~a~vl~~~l~~ 544 (564)
+..+..+.++++..
T Consensus 163 ~~~l~~~~~~~~~~ 176 (433)
T PF03092_consen 163 LPLLMLIVALFLLE 176 (433)
T ss_pred HHHHHHHHHHHhhh
Confidence 77777666665554
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.01 E-value=1.6 Score=47.28 Aligned_cols=124 Identities=12% Similarity=0.063 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHhcCcccccccccHHHHhhcCCCcchhhHHHHhhhhhccc-cccchhhhccccCCCCCCCccchhhhccc
Q 008482 14 VSTVASIWIQCTSGSLYTFSIYSPALKTTQHYDQTTLDTVSVFKDIGANT-GTLSGVLYTYSTSDHSSHHPRQQRLTRLL 92 (564)
Q Consensus 14 ~~l~a~~~i~l~~G~~Y~fS~ys~~L~~~lg~sq~~~~~i~~a~~vg~~~-g~~~G~l~d~~~~~~~~~~~~~~~~~~~~ 92 (564)
+-|++-++.+=...++.+++. ---++.+||+++|+-.++.+.++.... +++.|++-||+
T Consensus 256 ~FLiA~~~~~DGv~til~~~~--~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rf------------------ 315 (438)
T COG2270 256 LFLIARFFYIDGVNTILAMGG--VFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERF------------------ 315 (438)
T ss_pred HHHHHHHHHHhhHHHHHHHHH--HHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------------------
Confidence 446666666655555554432 123458999999999998888887765 57777777776
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHhhhcCCC-Ccceeee
Q 008482 93 GPWVVLLVGAIQCFAGYFLMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFPTY-SGTAVGI 164 (564)
Q Consensus 93 GP~~~~~iG~vl~~~Gy~~~~l~~~g~i~~~~~~~l~~~~~l~G~g~~~~~ta~l~t~~k~FP~~-RG~a~Gl 164 (564)
|+|.++.+|-++...-.+... ....+ ..+ ..++.+.|...|-.+..+=.--.|+.|++ -|.--|+
T Consensus 316 g~k~vl~~~lvi~~~~~~~~~---~~~~~-~~f---~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFgl 381 (438)
T COG2270 316 GSKPVLMIGLVILSIAALYLI---FLEGE-LDF---WILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGL 381 (438)
T ss_pred CCceeehHHHHHHHHHHHHHH---Hcccc-HHH---HHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeeh
Confidence 499999988887665544321 12211 223 35678888999999999999999999864 4554444
|
|
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=90.73 E-value=2.5 Score=49.01 Aligned_cols=72 Identities=13% Similarity=0.099 Sum_probs=57.2
Q ss_pred CcHHHHhhcHHHHHHHHHHHhhhhchhheecchhHHHhh-cCCCccchhHHHHHHHHHH-HHhhhhhhhhhhhh
Q 008482 341 LDLLQAICTLEFWILSFAMACGMGSGLATVNNISQIGGS-LGYSSFETSSLISLWSIWN-FLGRFGAGYVSDYF 412 (564)
Q Consensus 341 ~t~~~~l~t~~Fwll~~~~~~~~g~gl~~i~n~~~i~~~-~g~~~~~aa~~Vsl~si~n-~~GRl~~G~lsD~l 412 (564)
.+.++.++++.|=+..++-.+-..+-..++.-++-++|. .|.++..|..+.+.+++.. +.|=++.|++.-|+
T Consensus 383 ~s~~~ll~N~if~~~~l~~~~~~~~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkf 456 (735)
T KOG3626|consen 383 KSIKRLLSNPIFMLVVLASVIESLAITGYITFLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKF 456 (735)
T ss_pred HHHHHHhcCchHHHHHHHHHHHHHHHhhHHHhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeee
Confidence 467899999999888887777777666777778888876 4888888888888888776 47888888776655
|
|
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.39 E-value=33 Score=38.00 Aligned_cols=84 Identities=14% Similarity=0.061 Sum_probs=59.3
Q ss_pred cccchhhhccccCCCCCCCccchhhhcccCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhhhhhhh
Q 008482 64 GTLSGVLYTYSTSDHSSHHPRQQRLTRLLGPWVVLLVGAIQCFAGYFLMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFN 143 (564)
Q Consensus 64 g~~~G~l~d~~~~~~~~~~~~~~~~~~~~GP~~~~~iG~vl~~~Gy~~~~l~~~g~i~~~~~~~l~~~~~l~G~g~~~~~ 143 (564)
.+.++-+.|+.+ ||+.+.+|+..+..=.. |+.- ++-+.+++-.++.|+|.+..+
T Consensus 67 ~l~~psiv~~i~------------------~K~~lv~ga~~y~~f~~-------gfl~-~N~y~~yfssallG~Gaallw 120 (461)
T KOG3098|consen 67 CLFAPSIVNFLG------------------PKWALVIGATCYAAFPL-------GFLF-PNSYYLYFSSALLGFGAALLW 120 (461)
T ss_pred HHhhHHHHHHhh------------------HHHHHHHHhHHHHHHHH-------HHHh-cchHHHHHHHHHhhhhHHhee
Confidence 556677777764 99999998877554333 2221 223456677888999999988
Q ss_pred HHHHHHHhhhcC-CCCcceeeeehhhhhhhH
Q 008482 144 TADVVTSVRNFP-TYSGTAVGIMKGFVGLSG 173 (564)
Q Consensus 144 ta~l~t~~k~FP-~~RG~a~Gl~~a~~GLsa 173 (564)
++-=.-...|.. +++..-+++.-+.+=.|-
T Consensus 121 ~GqG~ylt~~st~~tie~Nisi~Wai~~~~l 151 (461)
T KOG3098|consen 121 TGQGGYLTSNSTRETIERNISIFWAIGQSSL 151 (461)
T ss_pred cccceehhhcCChhhHHHHHHHHHHHHHHHH
Confidence 888788888885 468888888776665554
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=90.37 E-value=4.2 Score=45.69 Aligned_cols=55 Identities=22% Similarity=0.153 Sum_probs=29.5
Q ss_pred HHHHHHhhhhchhheecchhHHHh-hcCCCccchhHHHHHHHHHHHHhhhhhhhhh
Q 008482 355 LSFAMACGMGSGLATVNNISQIGG-SLGYSSFETSSLISLWSIWNFLGRFGAGYVS 409 (564)
Q Consensus 355 l~~~~~~~~g~gl~~i~n~~~i~~-~~g~~~~~aa~~Vsl~si~n~~GRl~~G~ls 409 (564)
+.+.+++...+++.+=--...+.. -+|.+....+..++++-.+-++|-.+.|.+.
T Consensus 19 l~~~~f~sg~~~L~yEv~~~r~l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~ 74 (521)
T PRK03612 19 LLAAVFVCAACGLVYELLLGTLASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLL 74 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 344444555666665222223332 2355555556667776666667766666554
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=90.35 E-value=1.1 Score=36.75 Aligned_cols=46 Identities=22% Similarity=0.207 Sum_probs=40.2
Q ss_pred cchhHHHhhcCCCccchhHHHHHHHHHHHHhhhhhhhhhhhhhhcc
Q 008482 371 NNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVK 416 (564)
Q Consensus 371 ~n~~~i~~~~g~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~ 416 (564)
.-++-..+++|+++.+.....++.-+...++..++|++.||.++++
T Consensus 21 Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~ 66 (77)
T PF12832_consen 21 PFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRK 66 (77)
T ss_pred hhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccH
Confidence 3466677889999999999999999999999999999999997643
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=89.82 E-value=6.2 Score=36.98 Aligned_cols=91 Identities=12% Similarity=-0.021 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHhhhccccchhHHHH
Q 008482 389 SLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIASGLPGALYAGSILVGVCYGSQWSLMPTIA 468 (564)
Q Consensus 389 ~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~R~~~l~~~~~l~~i~~ll~~~~~~~~l~~~~~l~G~~~G~~~~~~P~iv 468 (564)
...++.-...++.-++.+.+.++++.| |.+.+..+.-++=...........++.++++.|++.+..|..-...+
T Consensus 41 ~slai~Y~~~~~s~l~~P~iv~~lg~K------~sm~lg~~~y~~y~~~~~~~~~~~l~~~s~l~G~~~a~lW~aqg~yl 114 (156)
T PF05978_consen 41 YSLAILYGSFAISCLFAPSIVNKLGPK------WSMILGSLGYAIYIASFFYPNSYTLYPASALLGFGAALLWTAQGTYL 114 (156)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhhH------HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHHhhHhhhHHH
Confidence 344444444555556778888888644 33443333322211111122334688899999999999999999888
Q ss_pred HHhhccCchhhhhhhHh
Q 008482 469 SEIFGVLQMGTIFNTIT 485 (564)
Q Consensus 469 se~FG~k~fg~nyg~~~ 485 (564)
.+.-=.++-++|.|+..
T Consensus 115 t~~s~~~~~~~~~~ifw 131 (156)
T PF05978_consen 115 TSYSTEETIGRNTGIFW 131 (156)
T ss_pred HHcCCHHHHhhHHHHHH
Confidence 88877777777766544
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=88.12 E-value=43 Score=36.37 Aligned_cols=74 Identities=16% Similarity=0.086 Sum_probs=49.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHhhhcCCCCcceeeeehhhhhhhH
Q 008482 94 PWVVLLVGAIQCFAGYFLMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFPTYSGTAVGIMKGFVGLSG 173 (564)
Q Consensus 94 P~~~~~iG~vl~~~Gy~~~~l~~~g~i~~~~~~~l~~~~~l~G~g~~~~~ta~l~t~~k~FP~~RG~a~Gl~~a~~GLsa 173 (564)
.|+ ++..++..+|+++... . ++++.-.+--++++.+++++...-+. -+..||+. +++---++.|.+|
T Consensus 90 ~Ri--~~~~~l~~~g~l~va~-----~--~~v~~~l~Gv~las~ssg~GE~tfL~-lt~~y~~~---~l~~wssGTG~aG 156 (402)
T PF02487_consen 90 IRI--LICVALSAAGMLLVAF-----S--PSVWVRLLGVVLASLSSGLGEVTFLS-LTHFYGKS---SLSAWSSGTGGAG 156 (402)
T ss_pred HHH--HHHHHHHHHHHhheee-----c--cchhHHHHHHHHHhhhhhhhHHHHHH-HHHhcCcc---ccccccCCcChhh
Confidence 454 4456678889988433 2 24554445667888999999888666 46678863 4566677788888
Q ss_pred HHHHHHH
Q 008482 174 AILIQVY 180 (564)
Q Consensus 174 ~i~s~i~ 180 (564)
.+-+..|
T Consensus 157 l~Ga~~y 163 (402)
T PF02487_consen 157 LVGALYY 163 (402)
T ss_pred HHHHHHH
Confidence 7766544
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=85.39 E-value=9.9 Score=41.12 Aligned_cols=153 Identities=11% Similarity=0.060 Sum_probs=92.8
Q ss_pred cCCCccchhHHHHHHHHHHHHhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHh--c--CcchHHHHHHHHHh
Q 008482 380 LGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIAS--G--LPGALYAGSILVGV 455 (564)
Q Consensus 380 ~g~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~R~~~l~~~~~l~~i~~ll~~~--~--~~~~l~~~~~l~G~ 455 (564)
...+..+++..-..+=.+=+.+-+-.|++-+|++.|++ +.+.+.++++++.++.. . ....+..+..+.|.
T Consensus 43 f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~g------i~lgL~l~avg~~lF~pAa~~~~y~~FL~~lFila~ 116 (422)
T COG0738 43 FDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAG------IVLGLLLYAVGAALFWPAASSKSYGFFLVALFILAS 116 (422)
T ss_pred hCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHH------HHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHh
Confidence 45565565555444444556777888888888865544 67778888888777642 1 12234445567788
Q ss_pred hhccccchhHHHHHHhhccCchhhhhhhHhhhhhhHHHhhhhhhhhhhhhccc----CCC-CccccC--CcccHHHHHHH
Q 008482 456 CYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREA----SGE-GNKCTG--THCFMLSFFIM 528 (564)
Q Consensus 456 ~~G~~~~~~P~ivse~FG~k~fg~nyg~~~~a~~iG~~lf~~~l~g~iyD~~~----~~~-~~~C~G--~~Cy~~af~i~ 528 (564)
+-|..=+..=+.++.+.-.++-...-+++...+++|.. .+|.+.+++-++.. +.. .+.=.+ ..-.+..|++.
T Consensus 117 Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~-~gp~~g~~lils~~~~~~~~~~~~~~~~~~~~~v~~pYl~~ 195 (422)
T COG0738 117 GIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAI-LGPLLGSSLILSGVALTMSAAQILAIKGADASSVQFPYLIL 195 (422)
T ss_pred hhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHH-HHHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhHHHHH
Confidence 88877777777777787666666677888777777775 46666666666310 000 000001 11267777777
Q ss_pred HHHHHHHHHHH
Q 008482 529 GSATLCGSLAA 539 (564)
Q Consensus 529 ~~l~v~a~vl~ 539 (564)
+..+++-.+..
T Consensus 196 ~~~lvll~v~~ 206 (422)
T COG0738 196 AGLLVLLAVLI 206 (422)
T ss_pred HHHHHHHHHHH
Confidence 76665544333
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=85.16 E-value=1.5 Score=41.10 Aligned_cols=76 Identities=17% Similarity=0.154 Sum_probs=53.5
Q ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHhhhcC-CCCcceeeeehhhhh
Q 008482 92 LGPWVVLLVGAIQCFAGYFLMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFP-TYSGTAVGIMKGFVG 170 (564)
Q Consensus 92 ~GP~~~~~iG~vl~~~Gy~~~~l~~~g~i~~~~~~~l~~~~~l~G~g~~~~~ta~l~t~~k~FP-~~RG~a~Gl~~a~~G 170 (564)
.|||+++++|++...+ |.. .... +..+.+....++.|+|.+...++--...+++-. ++|++-.|+-.+.+-
T Consensus 64 lg~K~sm~lg~~~y~~-y~~-----~~~~--~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~~~~~~~ifw~i~~ 135 (156)
T PF05978_consen 64 LGPKWSMILGSLGYAI-YIA-----SFFY--PNSYTLYPASALLGFGAALLWTAQGTYLTSYSTEETIGRNTGIFWAIFQ 135 (156)
T ss_pred HhhHHHHHHHHHHHHH-HHH-----HHHh--hhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHHHhhHHHHHHHHHH
Confidence 3599999998876542 332 1222 234667788889999999999998777777764 468888888777777
Q ss_pred hhHHH
Q 008482 171 LSGAI 175 (564)
Q Consensus 171 Lsa~i 175 (564)
.|..+
T Consensus 136 ~s~i~ 140 (156)
T PF05978_consen 136 SSLIF 140 (156)
T ss_pred HHHHH
Confidence 65433
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.92 E-value=1.3 Score=48.90 Aligned_cols=121 Identities=21% Similarity=0.295 Sum_probs=79.3
Q ss_pred HHhhcCCCcchhh-HHHHhhhhhccccccch-hhhccccCCCCCCCccchhhhcccCcHHHHHHHHHHHHHHHHHHHHHH
Q 008482 39 LKTTQHYDQTTLD-TVSVFKDIGANTGTLSG-VLYTYSTSDHSSHHPRQQRLTRLLGPWVVLLVGAIQCFAGYFLMWASV 116 (564)
Q Consensus 39 L~~~lg~sq~~~~-~i~~a~~vg~~~g~~~G-~l~d~~~~~~~~~~~~~~~~~~~~GP~~~~~iG~vl~~~Gy~~~~l~~ 116 (564)
+|.+++|++.+.+ ..++...++....++.. .+.-.+ |-+.++.+|.+...+++++.
T Consensus 268 l~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l------------------~~~~~i~lGl~~~~~~~~~~---- 325 (463)
T KOG2816|consen 268 LKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSIL------------------GEKRLISLGLLSEFLQLLLF---- 325 (463)
T ss_pred EeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------hhhhHhhHHHHHHHHHHHHH----
Confidence 7889999999999 44555555444344333 444444 35668999999999998884
Q ss_pred hcCCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHhhhcCCCCcceeeeehhhhhhhHHHHHHHHHhhc
Q 008482 117 VGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFPTYSGTAVGIMKGFVGLSGAILIQVYQTFF 184 (564)
Q Consensus 117 ~g~i~~~~~~~l~~~~~l~G~g~~~~~ta~l~t~~k~FP~~RG~a~Gl~~a~~GLsa~i~s~i~~~~f 184 (564)
++.. ..|++....++.+.+....-.-.-....-..||++|++-++....-+|++.+.+.+|+..|
T Consensus 326 -af~~--~~w~~~~~~v~~~~~~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~ 390 (463)
T KOG2816|consen 326 -AFAT--ETWMMFAAGVVVALAGIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIF 390 (463)
T ss_pred -HHhc--cchhhhHHHHHHHhhcchhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHH
Confidence 3322 3466665555554443332222222233334899999999999999999988887776543
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.45 E-value=2.2 Score=47.68 Aligned_cols=177 Identities=19% Similarity=0.167 Sum_probs=104.9
Q ss_pred HHhhcHHHHHH-HHHHHhhhhchhheecchhHHHhhcCCCccchhHHHHHHHHHHHHhhhhhhhhhhhhhhcccCchhHH
Q 008482 345 QAICTLEFWIL-SFAMACGMGSGLATVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLF 423 (564)
Q Consensus 345 ~~l~t~~Fwll-~~~~~~~~g~gl~~i~n~~~i~~~~g~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~R~~~ 423 (564)
+++.+++--++ +++.+.+.+.++.. +.+===+|+.|..+ ++..+.++-|-.|-+..=++|-|+-+|.+ +..+
T Consensus 366 ~~~~s~~~llff~~av~mG~g~~lv~-tFLfWHled~~~~~----~LfGv~~a~~~~gEI~~~ffs~klI~kiG--Hv~v 438 (618)
T KOG3762|consen 366 KVFASPHILLFFFVAVVMGAGVGLVF-TFLFWHLEDLGGIK----TLFGVVSALCHAGEILFYFFSFKLIEKIG--HVNV 438 (618)
T ss_pred HHhcCCCEEehhHHHHHHHHHHHHHH-HHHHHHHhhcCCcc----eeeeehhhhhccchHHHHHHHHHHHHHhc--ccce
Confidence 44555543332 23333334443322 33322336665332 23446667777777777777767665543 4444
Q ss_pred HHHHHHHHHHHHHHHH-hcCcchHHHHHHHHHhhhccccchhHHHHHHhhccCchhhhhhhHh-----hhhhhHHHhhhh
Q 008482 424 MVITLAAMSIGHLIIA-SGLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTIT-----IANPVGSYIFSV 497 (564)
Q Consensus 424 l~~~~~l~~i~~ll~~-~~~~~~l~~~~~l~G~~~G~~~~~~P~ivse~FG~k~fg~nyg~~~-----~a~~iG~~lf~~ 497 (564)
+.+.++...+=++.+. ...|+.....=++-|++++.+|...-+.++..=-++-=.+--|++. ++-..|++
T Consensus 439 ~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~Gsl---- 514 (618)
T KOG3762|consen 439 MYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSL---- 514 (618)
T ss_pred eeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhh----
Confidence 4444444444444443 2345555556688999999999999999888765544444444443 56677775
Q ss_pred hhhhhhhhcccCCCCccccCCcccHHHHHHHHHHHHHHHHHHHHHHHh
Q 008482 498 RVVGYIYDREASGEGNKCTGTHCFMLSFFIMGSATLCGSLAAFGLFLR 545 (564)
Q Consensus 498 ~l~g~iyD~~~~~~~~~C~G~~Cy~~af~i~~~l~v~a~vl~~~l~~r 545 (564)
+.|.+..+.+. +.+|.+..+.|++.+++-..+.++
T Consensus 515 -IGG~~v~~fg~------------~ttf~~~giAcl~~l~~~~~iq~~ 549 (618)
T KOG3762|consen 515 -IGGFVVERFGA------------RTTFRIFGIACLVTLALFISIQLL 549 (618)
T ss_pred -hhhhhheeehh------------HHHHHHHHHHHHHHHHHHHHhhhh
Confidence 47777777775 888988888888777665554433
|
|
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=81.94 E-value=19 Score=39.53 Aligned_cols=50 Identities=14% Similarity=0.179 Sum_probs=33.8
Q ss_pred CHHHHHHHHHHHhhhhhhhhHHHHHHHhhhcCCCCcceeeeehhhhhhhHHHHH
Q 008482 124 PVPVMCLFMLFAAHGMTFFNTADVVTSVRNFPTYSGTAVGIMKGFVGLSGAILI 177 (564)
Q Consensus 124 ~~~~l~~~~~l~G~g~~~~~ta~l~t~~k~FP~~RG~a~Gl~~a~~GLsa~i~s 177 (564)
.++..+...++.|.+++..... +..-+..||++ -++...++.|++|.+-+
T Consensus 105 ~f~~~~~~v~~~g~~~~~~q~s-~~gla~~fp~~---~~~a~~~G~g~aGv~~s 154 (437)
T TIGR00939 105 FFVTTMASVVIINSGMALLQGS-LFGLAGVFPST---YSSAVMSGQGLAGVLTS 154 (437)
T ss_pred HHHHHHHHHHHHHhhhhhhccc-chhhcccCCHH---HHHHHHhcchhHHHHHH
Confidence 3566667777888888776655 45566788854 34555677788887655
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=80.35 E-value=6.6 Score=37.85 Aligned_cols=110 Identities=20% Similarity=0.185 Sum_probs=66.7
Q ss_pred cHHHHhhcCCCc--chhhHHHHhhhhhcccc-ccchhhhccccCCCCCCCccchhhhcccCcHHHHHHHHHHHHHHHHHH
Q 008482 36 SPALKTTQHYDQ--TTLDTVSVFKDIGANTG-TLSGVLYTYSTSDHSSHHPRQQRLTRLLGPWVVLLVGAIQCFAGYFLM 112 (564)
Q Consensus 36 s~~L~~~lg~sq--~~~~~i~~a~~vg~~~g-~~~G~l~d~~~~~~~~~~~~~~~~~~~~GP~~~~~iG~vl~~~Gy~~~ 112 (564)
.+.+.++++.+. .+...+.....++...+ ++.|.+.|+. |+|....++......+....
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~------------------g~~~~~~~~~~~~~~~~~~~ 86 (338)
T COG0477 25 LPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRY------------------GRRKVLIIGLLLFLLGTLLL 86 (338)
T ss_pred HHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccc------------------cchHHHHHHHHHHHHHHHHH
Confidence 344444555444 34555545555555443 6777777765 46766666666545553332
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHhhhcCC--CCcceeeeehhh
Q 008482 113 WASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFPT--YSGTAVGIMKGF 168 (564)
Q Consensus 113 ~l~~~g~i~~~~~~~l~~~~~l~G~g~~~~~ta~l~t~~k~FP~--~RG~a~Gl~~a~ 168 (564)
..... ...+.+.....+.|.+.+..+.+......+++|+ +|+...++....
T Consensus 87 ~~~~~-----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (338)
T COG0477 87 ALAPN-----VGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLG 139 (338)
T ss_pred HhCcc-----chHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence 22111 2355555566667888888888888888999996 677777766653
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.30 E-value=67 Score=35.48 Aligned_cols=136 Identities=21% Similarity=0.175 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHhhhhchhheecchhHHHh---hc-CCCccchhHHHHHHHHHHHHhhhhhhhhhhhhhhcccCchhHHHH
Q 008482 350 LEFWILSFAMACGMGSGLATVNNISQIGG---SL-GYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMV 425 (564)
Q Consensus 350 ~~Fwll~~~~~~~~g~gl~~i~n~~~i~~---~~-g~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~R~~~l~ 425 (564)
++=|++.+++.+...+..|-=.+-++|.. .. | +...+.+.-.++-+....=-+..=|+.|+.+- | ..+.
T Consensus 41 ~rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GL-----R-~a~l 113 (480)
T KOG2563|consen 41 PRRWVVLLAFSLLNFSNGMQWIQYAPINNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGL-----R-TALL 113 (480)
T ss_pred hhHhHHHHHHHHHHhcCcchheeehhHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccch-----H-HHHH
Confidence 45688888888877776554444444442 21 3 33334455555666666555666677777753 2 2345
Q ss_pred HHHHHHHHHHHHHH-hcC---cchHH-----HHHHHHHhhhccccchhHHHHHHhhccCchhhhhhhHhhhhhhHH
Q 008482 426 ITLAAMSIGHLIIA-SGL---PGALY-----AGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGS 492 (564)
Q Consensus 426 ~~~~l~~i~~ll~~-~~~---~~~l~-----~~~~l~G~~~G~~~~~~P~ivse~FG~k~fg~nyg~~~~a~~iG~ 492 (564)
+...+++++.++=. ... +..+. .+-.+.+.++=-+..+-|=+.+-+|+.++=..---+-..++.+|.
T Consensus 114 lgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGv 189 (480)
T KOG2563|consen 114 LGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGV 189 (480)
T ss_pred HHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHH
Confidence 66677777766521 111 23344 677888888888888888889999999887765544444444444
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
No hit with e-value below 0.005
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 564 | |||
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.91 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.89 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.76 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.72 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.69 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.5 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.42 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 98.98 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 98.94 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 98.7 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 98.68 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 98.68 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 98.13 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 97.95 |
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.91 E-value=2.8e-23 Score=220.08 Aligned_cols=400 Identities=16% Similarity=0.106 Sum_probs=265.2
Q ss_pred hchhHHHHHHHHHHHHhcC-cccccccccHHHHhhcCCCcchhhHHHHhhhhhccc-cccchhhhccccCCCCCCCccch
Q 008482 9 LNTRWVSTVASIWIQCTSG-SLYTFSIYSPALKTTQHYDQTTLDTVSVFKDIGANT-GTLSGVLYTYSTSDHSSHHPRQQ 86 (564)
Q Consensus 9 ~~~Rw~~l~a~~~i~l~~G-~~Y~fS~ys~~L~~~lg~sq~~~~~i~~a~~vg~~~-g~~~G~l~d~~~~~~~~~~~~~~ 86 (564)
.+.||..+....+..+..+ ..+.++.+-|.+.+++ +|.+|+..+..+..++..+ .++.|.+.||+|
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g----------- 90 (451)
T 1pw4_A 23 RRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSN----------- 90 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSC-----------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcC-----------
Confidence 3456766666666665555 3477888899999999 9999999888888888765 678888888865
Q ss_pred hhhcccCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHhhhcC-CCCcceeeee
Q 008482 87 RLTRLLGPWVVLLVGAIQCFAGYFLMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFP-TYSGTAVGIM 165 (564)
Q Consensus 87 ~~~~~~GP~~~~~iG~vl~~~Gy~~~~l~~~g~i~~~~~~~l~~~~~l~G~g~~~~~ta~l~t~~k~FP-~~RG~a~Gl~ 165 (564)
+|.++.+|.++..+|.++....... . .+++.+....++.|.|.+..+.+......+++| ++||.+.|+.
T Consensus 91 -------~r~~l~~~~~~~~~~~~~~~~~~~~-~--~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~ 160 (451)
T 1pw4_A 91 -------PRVFLPAGLILAAAVMLFMGFVPWA-T--SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVW 160 (451)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHHHCHHH-H--SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHH
T ss_pred -------chHHHHHHHHHHHHHHHHHHhhhhc-c--ccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHH
Confidence 9999999999999999986552111 1 245566777888999999999999999999998 6799999999
Q ss_pred hhhhhhhHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhhhhheeeeecc-CCCCcccccchhHHHHHHHHHHHHHHHHHH
Q 008482 166 KGFVGLSGAILIQVYQTFFNNKPTSYLLLLALLASIDPLLLMWFVRICN-TNEGNEKKHLNSFSLIALIVAAYLMVIIIL 244 (564)
Q Consensus 166 ~a~~GLsa~i~s~i~~~~f~~~~~~~llfla~~p~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~i~~~~y~~~~~~~ 244 (564)
..+.+++..+.. .+...+ ++..+ .+ ..+ ....+. .++..
T Consensus 161 ~~~~~~g~~~g~----------------------~~~~~l----~~~~g~w~-----~~f---~~~~~~---~~~~~--- 200 (451)
T 1pw4_A 161 NCAHNVGGGIPP----------------------LLFLLG----MAWFNDWH-----AAL---YMPAFC---AILVA--- 200 (451)
T ss_dssp HHHHHHHHTSHH----------------------HHHHHH----HHHTCCST-----TCT---HHHHHH---HHHHH---
T ss_pred HHHHHHHHHHHH----------------------HHHHHH----HHHhccHH-----HHH---HHHHHH---HHHHH---
Confidence 888888876643 222111 11111 11 111 111000 00000
Q ss_pred hhhccCchHHHHHHHHHHHHHHhhhhhhhhhccCCCCCCCCcCccccCCCCCCCccchhhhccccCCCCCCCCCCCCCCC
Q 008482 245 EHIFALPFLVRVLTLILLLLLLASPLYVAIRVQGSDSDRTSETSFCEEDELTDDPHEMHAEKMHVRQDPVGYHRLPSEPD 324 (564)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~ll~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (564)
++.... .+.++++ .+.. + +++ ..++ ++++. ..+.
T Consensus 201 -----------------~~~~~~------~~~~~~~-~~~~---~-~~~-~~~~-------------~~~~~---~~~~- 234 (451)
T 1pw4_A 201 -----------------LFAFAM------MRDTPQS-CGLP---P-IEE-YKND-------------YPDDY---NEKA- 234 (451)
T ss_dssp -----------------HHHHHH------CCCSSTT-TCCC---S-CTT-TCCC--------------------------
T ss_pred -----------------HHHHhh------ccCCHhh-cCCC---C-hhh-hccc-------------ccccc---hhhh-
Confidence 000000 1111110 0000 0 000 0000 00000 0000
Q ss_pred CCCCCCCCCccCCCCCCcHHHHhhcHHHHHHHHHHHhhhhchhheecchhHHHhh-cCCCccchhHHHHHHHHHHHHhhh
Q 008482 325 VGTDTNDATTSLWGGDLDLLQAICTLEFWILSFAMACGMGSGLATVNNISQIGGS-LGYSSFETSSLISLWSIWNFLGRF 403 (564)
Q Consensus 325 ~~~~~~~~~~~~~~~~~t~~~~l~t~~Fwll~~~~~~~~g~gl~~i~n~~~i~~~-~g~~~~~aa~~Vsl~si~n~~GRl 403 (564)
.+.....+...++.++++.+|.+.+..++......++......+.++ .|.++.+++...++.++.+.+|++
T Consensus 235 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 306 (451)
T 1pw4_A 235 --------EQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTL 306 (451)
T ss_dssp ------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred --------hcccccccchHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 00000112235788999999999998888877776777778888877 789988888999999999999999
Q ss_pred hhhhhhhhh--hhcccCchhHHHHHHHHHHH-HHHHHHHhc---CcchHHHHHHHHHhhhccccchhHHHHHHhhccCch
Q 008482 404 GAGYVSDYF--LHVKEWARPLFMVITLAAMS-IGHLIIASG---LPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQM 477 (564)
Q Consensus 404 ~~G~lsD~l--~~~~~~~R~~~l~~~~~l~~-i~~ll~~~~---~~~~l~~~~~l~G~~~G~~~~~~P~ivse~FG~k~f 477 (564)
+.|+++||+ ++ |.. +.....+.. ++++++... ....+.+...+.|++++........++.|.+..++.
T Consensus 307 ~~g~l~~~~~~~~-----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 380 (451)
T 1pw4_A 307 LCGWMSDKVFRGN-----RGA-TGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAA 380 (451)
T ss_dssp HHHHHHHHTSTTC-----HHH-HHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHH
T ss_pred HHHHHHHHHhcCC-----chh-HHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhh
Confidence 999999998 53 222 333333333 454444322 222355667788999999888888999999999999
Q ss_pred hhhhhhHhhhhhh-HHHhhhhhhhhhhhhcccCCCCccccCCcccHHHHHHHHHHHHHHHHHHHHHH
Q 008482 478 GTIFNTITIANPV-GSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSFFIMGSATLCGSLAAFGLF 543 (564)
Q Consensus 478 g~nyg~~~~a~~i-G~~lf~~~l~g~iyD~~~~~~~~~C~G~~Cy~~af~i~~~l~v~a~vl~~~l~ 543 (564)
|+.+|+......+ |.. +++.+.|.++|..+ |+.+|++.+++++++.++.+++.
T Consensus 381 g~~~~~~~~~~~~~g~~-~~~~~~g~l~~~~g------------~~~~~~~~~~~~~~~~~~~~~~~ 434 (451)
T 1pw4_A 381 GTAAGFTGLFGYLGGSV-AASAIVGYTVDFFG------------WDGGFMVMIGGSILAVILLIVVM 434 (451)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHHHHHHHSSC------------SHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHH-HHHHHHHHHHHhcC------------cHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999877777 774 56778999999865 79999999998888886665544
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=3.9e-22 Score=210.76 Aligned_cols=386 Identities=12% Similarity=0.068 Sum_probs=257.7
Q ss_pred chhHHHHHHHHHHHHhcCcc-cccccccHHHHhhcCCCcchhhHHHHhhhhhccc-cccchhhhccccCCCCCCCccchh
Q 008482 10 NTRWVSTVASIWIQCTSGSL-YTFSIYSPALKTTQHYDQTTLDTVSVFKDIGANT-GTLSGVLYTYSTSDHSSHHPRQQR 87 (564)
Q Consensus 10 ~~Rw~~l~a~~~i~l~~G~~-Y~fS~ys~~L~~~lg~sq~~~~~i~~a~~vg~~~-g~~~G~l~d~~~~~~~~~~~~~~~ 87 (564)
+++|..++......+..|.. +.++.+.|.+++++|+|.+|+..+..+..++..+ .++.|.+.||+|
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g------------ 89 (438)
T 3o7q_A 22 RSYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLS------------ 89 (438)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSC------------
T ss_pred hHhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhc------------
Confidence 44555555555555555543 6888889999999999999999888888888765 678888888865
Q ss_pred hhcccCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHhhhcC-CCCcceeeeeh
Q 008482 88 LTRLLGPWVVLLVGAIQCFAGYFLMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFP-TYSGTAVGIMK 166 (564)
Q Consensus 88 ~~~~~GP~~~~~iG~vl~~~Gy~~~~l~~~g~i~~~~~~~l~~~~~l~G~g~~~~~ta~l~t~~k~FP-~~RG~a~Gl~~ 166 (564)
+|.++.+|.++..+|.++.+.. ... ++++.++..-++.|.|.+..+.+......+++| ++||.+.|+..
T Consensus 90 ------~r~~l~~~~~~~~~~~~~~~~~--~~~--~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 159 (438)
T 3o7q_A 90 ------YKAGIITGLFLYALGAALFWPA--AEI--MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQ 159 (438)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHHH--HHT--TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHH
T ss_pred ------chHHHHHHHHHHHHHHHHHHhc--ccc--ccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHH
Confidence 9999999999999999987553 222 367888888899999999999999999999998 67999999999
Q ss_pred hhhhhhHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhhhhheeeeeccCCC-------C-cccccch-----hHHHHHHH
Q 008482 167 GFVGLSGAILIQVYQTFFNNKPTSYLLLLALLASIDPLLLMWFVRICNTNE-------G-NEKKHLN-----SFSLIALI 233 (564)
Q Consensus 167 a~~GLsa~i~s~i~~~~f~~~~~~~llfla~~p~~~~~~~~~~i~~~~~~~-------~-~~~~~~~-----~~~~~~i~ 233 (564)
++.+++..+-..+...... ...+... + +..+.+. .+......
T Consensus 160 ~~~~~g~~~g~~~~~~l~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 214 (438)
T 3o7q_A 160 TFNSFGAIIAVVFGQSLIL-------------------------SNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMI 214 (438)
T ss_dssp HHHHHHHHHHHHHTTHHHH-------------------------TSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh-------------------------cccccccccccccCCcchhhhhhhhhhhhHHHHHHH
Confidence 9999998776433322110 0000000 0 0000000 01100000
Q ss_pred HHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHhhhhhhhhhccCCCCCCCCcCccccCCCCCCCccchhhhccccCCCC
Q 008482 234 VAAYLMVIIILEHIFALPFLVRVLTLILLLLLLASPLYVAIRVQGSDSDRTSETSFCEEDELTDDPHEMHAEKMHVRQDP 313 (564)
Q Consensus 234 ~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (564)
.++... ++...... .+.+ +. +++ ++ +
T Consensus 215 ~~~~~~-------------------------~~~~~~~~-~~~p-~~-~~~-------------~~-------------~ 240 (438)
T 3o7q_A 215 IVAIVL-------------------------LVALLIML-TKFP-AL-QSD-------------NH-------------S 240 (438)
T ss_dssp HHHHHH-------------------------HHHHHHHH-CCCC-CC-TTT-------------CC-------------C
T ss_pred HHHHHH-------------------------HHHHHHHH-HcCC-cc-ccc-------------cc-------------c
Confidence 000000 00000000 0100 00 000 00 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCccCCCCCCcHHHHhhcHHHHHHHHHHHhhhhchhheecchhHH-Hhhc-CCCccchhHHH
Q 008482 314 VGYHRLPSEPDVGTDTNDATTSLWGGDLDLLQAICTLEFWILSFAMACGMGSGLATVNNISQI-GGSL-GYSSFETSSLI 391 (564)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~t~~Fwll~~~~~~~~g~gl~~i~n~~~i-~~~~-g~~~~~aa~~V 391 (564)
++ + +.....++++.++++.+|...+..++..+....+.+.+..+ .++. |.++.+++...
T Consensus 241 ~~------~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 301 (438)
T 3o7q_A 241 DA------K-------------QGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYL 301 (438)
T ss_dssp CS------S-------------TTSHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHH
T ss_pred cc------c-------------ccchhhhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHH
Confidence 00 0 00012356889999999999999999888887888888888 7776 99988889999
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHhhhccccchhHHHHHHh
Q 008482 392 SLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIASGLPGALYAGSILVGVCYGSQWSLMPTIASEI 471 (564)
Q Consensus 392 sl~si~n~~GRl~~G~lsD~l~~~~~~~R~~~l~~~~~l~~i~~ll~~~~~~~~l~~~~~l~G~~~G~~~~~~P~ivse~ 471 (564)
++..+.+.+|+++.|+++||+++ ...+....++.+++.+++.........+..++.|++++..+....+++.|.
T Consensus 302 ~~~~~~~~~~~~~~g~l~~r~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 375 (438)
T 3o7q_A 302 TGTMVCFFIGRFTGTWLISRFAP------HKVLAAYALIAMALCLISAFAGGHVGLIALTLCSAFMSIQYPTIFSLGIKN 375 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCH------HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTTHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc------hHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999954 344555555556655554433322344556888999999999999999999
Q ss_pred hccCchhhhhhhHhhhhhhHHHhhhhhhhhhhhhcccCCCCccccCCcccHHHHHHHHHHHHHH
Q 008482 472 FGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSFFIMGSATLCG 535 (564)
Q Consensus 472 FG~k~fg~nyg~~~~a~~iG~~lf~~~l~g~iyD~~~~~~~~~C~G~~Cy~~af~i~~~l~v~a 535 (564)
++.+ -++.-++... ..+|.. +++.+.|.++|..++ |+.+|.+..++.++.
T Consensus 376 ~~~~-~~~~~~~~~~-~~~g~~-~~~~~~g~l~~~~g~-----------~~~~~~~~~~~~~~~ 425 (438)
T 3o7q_A 376 LGQD-TKYGSSFIVM-TIIGGG-IVTPVMGFVSDAAGN-----------IPTAELIPALCFAVI 425 (438)
T ss_dssp CGGG-HHHHHHHHHH-TTHHHH-HHHHHHHHHHHHHTS-----------SGGGGHHHHHHHHHH
T ss_pred cccc-ccchhhHHHH-HHHHHH-HHHHHHHHHHHHhcc-----------hHHHHHHHHHHHHHH
Confidence 9855 5555565553 346664 567789999999876 688888765444443
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.76 E-value=3.9e-17 Score=175.63 Aligned_cols=404 Identities=12% Similarity=0.015 Sum_probs=222.7
Q ss_pred ccccHHHHhh-----cCCCcchhhHHHHhhhhhccc-cccchhhhcc-ccCCCCCCCccchhhhcccCcHHHHHHHHHHH
Q 008482 33 SIYSPALKTT-----QHYDQTTLDTVSVFKDIGANT-GTLSGVLYTY-STSDHSSHHPRQQRLTRLLGPWVVLLVGAIQC 105 (564)
Q Consensus 33 S~ys~~L~~~-----lg~sq~~~~~i~~a~~vg~~~-g~~~G~l~d~-~~~~~~~~~~~~~~~~~~~GP~~~~~iG~vl~ 105 (564)
+...+.++++ +|+|.+|...+.....++..+ .++.|.+.|| +| +|.++.+|.++.
T Consensus 34 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g------------------~r~~~~~~~~~~ 95 (491)
T 4aps_A 34 AILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIG------------------ARPAVFWGGVLI 95 (491)
T ss_dssp HHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC------------------HHHHHHHHHHHH
T ss_pred HHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc------------------chHHHHHHHHHH
Confidence 3444556666 999999999888888888765 5678888887 65 999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHhhhcC-CC--CcceeeeehhhhhhhHHHHHHHHHh
Q 008482 106 FAGYFLMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFP-TY--SGTAVGIMKGFVGLSGAILIQVYQT 182 (564)
Q Consensus 106 ~~Gy~~~~l~~~g~i~~~~~~~l~~~~~l~G~g~~~~~ta~l~t~~k~FP-~~--RG~a~Gl~~a~~GLsa~i~s~i~~~ 182 (564)
.+|..++. .. .+++.+...-++.|.|.+..+.+......++|| ++ ||.+.++......+++.+-.
T Consensus 96 ~~~~~~~~-----~~--~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~----- 163 (491)
T 4aps_A 96 MLGHIVLA-----LP--FGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAP----- 163 (491)
T ss_dssp HHHHHHHH-----SC--CSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHH-----Hh--hhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHH-----
Confidence 99998743 22 345667777888999999999999999999997 46 56666666666667665543
Q ss_pred hcCCCchhHHHHHHHHHHHHhhhhheeeeeccCCCCcccccchhHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHH
Q 008482 183 FFNNKPTSYLLLLALLASIDPLLLMWFVRICNTNEGNEKKHLNSFSLIALIVAAYLMVIIILEHIFALPFLVRVLTLILL 262 (564)
Q Consensus 183 ~f~~~~~~~llfla~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (564)
.+...+ .+..+.+ ..|.. .++..++. .+
T Consensus 164 -----------------~~~~~l----~~~~g~~--------~~f~~----~~~~~~~~-------------------~~ 191 (491)
T 4aps_A 164 -----------------LIVGAA----QEAAGYH--------VAFSL----AAIGMFIG-------------------LL 191 (491)
T ss_dssp -----------------HHHHHH----HHHSCHH--------HHHHH----HHHHHHHH-------------------HH
T ss_pred -----------------HHHHHH----HhhhhHH--------HHHHH----HHHHHHHH-------------------HH
Confidence 222111 1101000 00110 00000000 00
Q ss_pred HHHHhhhhhhhhhccCCCCCCCCcCccccCCCCCCCccchhhhc-cc----------------cCCCCCCCCCCCCCCCC
Q 008482 263 LLLLASPLYVAIRVQGSDSDRTSETSFCEEDELTDDPHEMHAEK-MH----------------VRQDPVGYHRLPSEPDV 325 (564)
Q Consensus 263 ~~ll~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----------------~~~~~~~~~~~~~~~~~ 325 (564)
+.+... +...++..+.. ++ +...++..+. +. ..+..+.++........
T Consensus 192 ~~~~~~------~~~~~~~~~~~------~~---~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (491)
T 4aps_A 192 VYYFGG------KKTLDPHYLRP------TD---PLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIV 256 (491)
T ss_dssp HHHHHH------HTTCCSCCSCC------SC---CCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHH
T ss_pred HHHHhC------cccccccccCC------CC---ccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHH
Confidence 000000 00000000000 00 0000000000 00 00000000000000000
Q ss_pred C--CCCCCCCccCCCCCCcHHHHhhcHHHHHHHHHHHhhhhchhheecchhHHHhh-cCCCccchhHHHHHHHHHHHHhh
Q 008482 326 G--TDTNDATTSLWGGDLDLLQAICTLEFWILSFAMACGMGSGLATVNNISQIGGS-LGYSSFETSSLISLWSIWNFLGR 402 (564)
Q Consensus 326 ~--~~~~~~~~~~~~~~~t~~~~l~t~~Fwll~~~~~~~~g~gl~~i~n~~~i~~~-~g~~~~~aa~~Vsl~si~n~~GR 402 (564)
. ..........+....+..+..+...+|.+++..++.........+.+....++ .+.+....+...++.++...++.
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (491)
T 4aps_A 257 AIAIPVFYFAWMISSVKVTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYT 336 (491)
T ss_dssp HHHHHHHHHHHHC------------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHH
Confidence 0 00000000000000011122233345555555444444444444455555555 45554566778888999999999
Q ss_pred hhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHh----------cCcchHHHHHHHHHhhhccccchhHHHHHHhh
Q 008482 403 FGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIAS----------GLPGALYAGSILVGVCYGSQWSLMPTIASEIF 472 (564)
Q Consensus 403 l~~G~lsD~l~~~~~~~R~~~l~~~~~l~~i~~ll~~~----------~~~~~l~~~~~l~G~~~G~~~~~~P~ivse~F 472 (564)
++.|+++||+++|+. .+.+.+.....+.+++++++.. .....+.+..++.|++.+........++.|.+
T Consensus 337 ~~~~~l~~r~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~ 415 (491)
T 4aps_A 337 PFFAWLWTAWKKNQP-SSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLA 415 (491)
T ss_dssp HHHHHHHHHTTTC----CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHT
T ss_pred HHHHHHHHHHhccCC-CchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhC
Confidence 999999999987653 3334444555555555544322 12224566778889999999999999999999
Q ss_pred ccCchhhhhhhHhhhhhhHHHhhhhhhhhhhhhcccCCCCccccCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 008482 473 GVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSFFIMGSATLCGSLAAFGLFLRTKR 548 (564)
Q Consensus 473 G~k~fg~nyg~~~~a~~iG~~lf~~~l~g~iyD~~~~~~~~~C~G~~Cy~~af~i~~~l~v~a~vl~~~l~~r~~~ 548 (564)
..++-|+..|+......+|.. +++.+.+.+.|.. |...|.+.+++++++.++.++...+.|+
T Consensus 416 p~~~~g~~~g~~~~~~~~g~~-i~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (491)
T 4aps_A 416 PKAFNSQMMSMWFLSSSVGSA-LNAQLVTLYNAKS-------------EVAYFSYFGLGSVVLGIVLVFLSKRIQG 477 (491)
T ss_dssp TTTCSSSSTHHHHHHHHHHHH-HHHHHGGGGGGSS-------------TTHHHHHTHHHHHHHHHHHHHC------
T ss_pred CHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhccc-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999888888875 5666788887752 5778888888888877666655544444
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.72 E-value=8.2e-18 Score=174.52 Aligned_cols=332 Identities=13% Similarity=0.019 Sum_probs=223.6
Q ss_pred ccccccccHHHHhhcCCCcchhhHHHHhhhhhccc-cccchhhhccccCCCCCCCccchhhhcccCcHHHHHHHHHHHHH
Q 008482 29 LYTFSIYSPALKTTQHYDQTTLDTVSVFKDIGANT-GTLSGVLYTYSTSDHSSHHPRQQRLTRLLGPWVVLLVGAIQCFA 107 (564)
Q Consensus 29 ~Y~fS~ys~~L~~~lg~sq~~~~~i~~a~~vg~~~-g~~~G~l~d~~~~~~~~~~~~~~~~~~~~GP~~~~~iG~vl~~~ 107 (564)
...++..-|.+++++|+|.+|...+..+..++..+ .++.|.+.||+| +|.++.++.++..+
T Consensus 16 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g------------------~r~~~~~~~~~~~~ 77 (375)
T 2gfp_A 16 QTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVG------------------RRPVILVGMSIFML 77 (375)
T ss_dssp HHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSC------------------CCCCCHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC------------------CchhHHHHHHHHHH
Confidence 34455566778899999999999888888887765 678888888875 88899999999999
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHhhhcC-CCCcceeeeehhhhhhhHHHHHHHHHhhcCC
Q 008482 108 GYFLMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFP-TYSGTAVGIMKGFVGLSGAILIQVYQTFFNN 186 (564)
Q Consensus 108 Gy~~~~l~~~g~i~~~~~~~l~~~~~l~G~g~~~~~ta~l~t~~k~FP-~~RG~a~Gl~~a~~GLsa~i~s~i~~~~f~~ 186 (564)
+..+.... ++++.+....++.|.+.+..+.+......+++| ++|+++.|+.....+++..+-.
T Consensus 78 ~~~~~~~~-------~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--------- 141 (375)
T 2gfp_A 78 ATLVAVTT-------SSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAP--------- 141 (375)
T ss_dssp HHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHH---------
T ss_pred HHHHHHHh-------ccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhH---------
Confidence 99886553 246677778889999999999999999999997 6899999998888888876643
Q ss_pred CchhHHHHHHHHHHHHhhhhheeeeeccCCCCcccccchhHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHH
Q 008482 187 KPTSYLLLLALLASIDPLLLMWFVRICNTNEGNEKKHLNSFSLIALIVAAYLMVIIILEHIFALPFLVRVLTLILLLLLL 266 (564)
Q Consensus 187 ~~~~~llfla~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 266 (564)
.+... +.+..+.+ ..+. ..+ +..++.
T Consensus 142 -------------~~~~~----l~~~~~~~--------~~~~----~~~-------------------------~~~~~~ 167 (375)
T 2gfp_A 142 -------------LIGGL----LDTMWNWR--------ACYL----FLL-------------------------VLCAGV 167 (375)
T ss_dssp -------------HHHHH----SSCHHHHH--------HHHH----HHH-------------------------HHHHHH
T ss_pred -------------HHHHH----HHHhccHH--------HHHH----HHH-------------------------HHHHHH
Confidence 22211 11100000 0000 000 000000
Q ss_pred hhhhhhhhhccCCCCCCCCcCccccCCCCCCCccchhhhccccCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCcHHHH
Q 008482 267 ASPLYVAIRVQGSDSDRTSETSFCEEDELTDDPHEMHAEKMHVRQDPVGYHRLPSEPDVGTDTNDATTSLWGGDLDLLQA 346 (564)
Q Consensus 267 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~ 346 (564)
...... ..+ ++ +++ +++ ++ +...+.++.
T Consensus 168 ~~~~~~--~~~-~~-~~~-----------------------------~~~-----~~--------------~~~~~~~~~ 195 (375)
T 2gfp_A 168 TFSMAR--WMP-ET-RPV-----------------------------DAP-----RT--------------RLLTSYKTL 195 (375)
T ss_dssp HCCCCC--SSC-CC-STT-----------------------------TCC-----CC--------------CTTTCSTHH
T ss_pred HHHHHH--HCc-cc-CCC-----------------------------Ccc-----cc--------------cHHHHHHHH
Confidence 010000 000 00 000 000 00 011234688
Q ss_pred hhcHHHHHHHHHHHhhhhchhheecchhHHHhh-cCCCccchhHHHHHHHHHHHHhhhhhhhhhhhhhhcccCchhHHHH
Q 008482 347 ICTLEFWILSFAMACGMGSGLATVNNISQIGGS-LGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMV 425 (564)
Q Consensus 347 l~t~~Fwll~~~~~~~~g~gl~~i~n~~~i~~~-~g~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~R~~~l~ 425 (564)
+|++++|.+.+..++.......+....+.+.++ .|.++.+++...++.++...+|+++.|+++||.++ .....
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~------~~~~~ 269 (375)
T 2gfp_A 196 FGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFST------LMWQS 269 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHH------HHHHH
T ss_pred hcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHH
Confidence 999999999988888776666666667777766 68887778888999999999999999999999843 11122
Q ss_pred HHH-HHHHHHHHHHHh---cCcchHHHHHHHHHhhhccccchhHHHHHHhhccCchhhhhhhHhhhhhhHHHhhhhhhhh
Q 008482 426 ITL-AAMSIGHLIIAS---GLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVG 501 (564)
Q Consensus 426 ~~~-~l~~i~~ll~~~---~~~~~l~~~~~l~G~~~G~~~~~~P~ivse~FG~k~fg~nyg~~~~a~~iG~~lf~~~l~g 501 (564)
... ...++..+.... .....+++..++.|+++|..+......+.|.+. ++.|+..|+......+|.. +++.+.|
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~-~~~~~~g 347 (375)
T 2gfp_A 270 VICCLLAGLLMWIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSG-VLASLSA 347 (375)
T ss_dssp HHHHHHTSSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHH-CCSTTCT
T ss_pred HHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHH-HHHHHHH
Confidence 111 111111111111 122235567788999999999999999999997 8999999999988888885 5777899
Q ss_pred hhhhccc
Q 008482 502 YIYDREA 508 (564)
Q Consensus 502 ~iyD~~~ 508 (564)
.++|..+
T Consensus 348 ~l~~~~~ 354 (375)
T 2gfp_A 348 MLPQTGQ 354 (375)
T ss_dssp HHHHHHH
T ss_pred HHhcCCc
Confidence 9988643
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=1.5e-17 Score=176.67 Aligned_cols=198 Identities=13% Similarity=0.016 Sum_probs=129.2
Q ss_pred cHHHHhhcHHHHHHHHHHHhhhhchhheecchhHHHhhc-C---CCccchhHHHHHHHHHHHHhhhhhhhhhhhhhhccc
Q 008482 342 DLLQAICTLEFWILSFAMACGMGSGLATVNNISQIGGSL-G---YSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKE 417 (564)
Q Consensus 342 t~~~~l~t~~Fwll~~~~~~~~g~gl~~i~n~~~i~~~~-g---~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~ 417 (564)
+.++.++++++|.+++..++....-..+.+..+...++. + .+........++..+.+.+|+++.|+++||+++
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~--- 288 (417)
T 2cfq_A 212 LALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGG--- 288 (417)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH---
T ss_pred HHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcH---
Confidence 356789999999887664443322222222334444432 2 112223456667778889999999999999954
Q ss_pred CchhHHHHHHHHHHHHHHHHHHhc-CcchHHHHHHHHHhhhccccchhHHHHHHhhccCchhhhhhhH-hhhhhhHHHhh
Q 008482 418 WARPLFMVITLAAMSIGHLIIASG-LPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTI-TIANPVGSYIF 495 (564)
Q Consensus 418 ~~R~~~l~~~~~l~~i~~ll~~~~-~~~~l~~~~~l~G~~~G~~~~~~P~ivse~FG~k~fg~nyg~~-~~a~~iG~~lf 495 (564)
...+.....+.+++.+++... .+..+.+...+.+++++........+++|.+..+.-|+.+|+. ..+..+|.. +
T Consensus 289 ---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~-~ 364 (417)
T 2cfq_A 289 ---KNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMI-F 364 (417)
T ss_dssp ---HHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHH-H
T ss_pred ---HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHH-H
Confidence 334445555555555444332 2223444556677777777666778999999999999999985 666667774 5
Q ss_pred hhhhhhhhhhcccCCCCccccCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhccccC
Q 008482 496 SVRVVGYIYDREASGEGNKCTGTHCFMLSFFIMGSATLCGSLAAFGLFLRTKRFYNEVILRRLLHSVRE 564 (564)
Q Consensus 496 ~~~l~g~iyD~~~~~~~~~C~G~~Cy~~af~i~~~l~v~a~vl~~~l~~r~~~~~~~~~~~~~~~~~~~ 564 (564)
++.+.|.++|..+ |...|.+.+++++++.++.++...+ +..++..||||.|
T Consensus 365 gp~l~G~l~~~~g------------~~~~f~~~~~~~l~~~~~~~~~~~~------~~~~~~~~~~~~~ 415 (417)
T 2cfq_A 365 MSVLAGNMYESIG------------FQGAYLVLGLVALGFTLISVFTLSG------PGPLSLLRRQVNE 415 (417)
T ss_dssp HTHHHHTHHHHSH------------HHHHHHHHHHHHHHHHHHHTTSSCC------SCTTCSSSSSSTT
T ss_pred hhhhHHHHHHhcC------------cHHHHHHHHHHHHHHHHHHHhhhcC------CCchHHHHHHhhc
Confidence 6778999999654 6889998888888877555432221 2225667888876
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.50 E-value=2.8e-13 Score=146.81 Aligned_cols=137 Identities=12% Similarity=-0.044 Sum_probs=98.7
Q ss_pred HHHHHHHHHHHHhcCcccccccccHHHHhhcC------CCcchhhHHHHhhhhhccc-cccchhhhccc-cCCCCCCCcc
Q 008482 13 WVSTVASIWIQCTSGSLYTFSIYSPALKTTQH------YDQTTLDTVSVFKDIGANT-GTLSGVLYTYS-TSDHSSHHPR 84 (564)
Q Consensus 13 w~~l~a~~~i~l~~G~~Y~fS~ys~~L~~~lg------~sq~~~~~i~~a~~vg~~~-g~~~G~l~d~~-~~~~~~~~~~ 84 (564)
|+..+...+...+... ..+...+.+++++| +|..|...+.....++..+ .++.|.+.||+ |
T Consensus 15 ~~~~~~~~~~~~~~~~--~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g--------- 83 (524)
T 2xut_A 15 PYIIASEACERFSFYG--MRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFG--------- 83 (524)
T ss_dssp THHHHHHHHHHHHHHH--HHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSC---------
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---------
Confidence 5555544444443221 22334455788899 9999999887777777765 56788888876 5
Q ss_pred chhhhcccCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHhhhcC-CCCcceee
Q 008482 85 QQRLTRLLGPWVVLLVGAIQCFAGYFLMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFP-TYSGTAVG 163 (564)
Q Consensus 85 ~~~~~~~~GP~~~~~iG~vl~~~Gy~~~~l~~~g~i~~~~~~~l~~~~~l~G~g~~~~~ta~l~t~~k~FP-~~RG~a~G 163 (564)
+|.++.++.++..++++++..+ . .+++.+....++.|.|.+..+.+......++|| ++||.+.+
T Consensus 84 ---------~r~~~~~~~~~~~~~~~~~~~~--~----~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 148 (524)
T 2xut_A 84 ---------KYNTILWLSLIYCVGHAFLAIF--E----HSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQK 148 (524)
T ss_dssp ---------SHHHHHHHHHHHHHHHHHHHHT--S----SCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHH
T ss_pred ---------chHHHHHHHHHHHHHHHHHHHh--c----ccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHH
Confidence 9999999999999999885442 1 146667777888899999999999999999998 46887766
Q ss_pred e---ehhhhhhhHHH
Q 008482 164 I---MKGFVGLSGAI 175 (564)
Q Consensus 164 l---~~a~~GLsa~i 175 (564)
+ ......+++.+
T Consensus 149 ~~~~~~~~~~~g~~~ 163 (524)
T 2xut_A 149 AFDMFYFTINFGSFF 163 (524)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 5 55555555544
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=3.1e-13 Score=144.93 Aligned_cols=128 Identities=16% Similarity=0.135 Sum_probs=88.7
Q ss_pred ccccccc---HHHHhhcCCC----c----chhhHHHHhhhhhcccc-ccchhhhccccCCCCCCCccchhhhcccCcHHH
Q 008482 30 YTFSIYS---PALKTTQHYD----Q----TTLDTVSVFKDIGANTG-TLSGVLYTYSTSDHSSHHPRQQRLTRLLGPWVV 97 (564)
Q Consensus 30 Y~fS~ys---~~L~~~lg~s----q----~~~~~i~~a~~vg~~~g-~~~G~l~d~~~~~~~~~~~~~~~~~~~~GP~~~ 97 (564)
|+.++.+ +++++.++.+ . ++...+..+..+|..+| ++.|.+.||+ |+|++
T Consensus 26 yd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~------------------GRk~~ 87 (491)
T 4gc0_A 26 YDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRF------------------GRRDS 87 (491)
T ss_dssp HHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHT------------------CHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------------------cCHHH
Confidence 4445555 4455555332 2 23334555666777663 5677777776 59999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCC-----------CCCCHHHHHHHHHHHhhhhhhhhHHHHHHHhhhcC-CCCcceeeee
Q 008482 98 LLVGAIQCFAGYFLMWASVVGLI-----------PRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFP-TYSGTAVGIM 165 (564)
Q Consensus 98 ~~iG~vl~~~Gy~~~~l~~~g~i-----------~~~~~~~l~~~~~l~G~g~~~~~ta~l~t~~k~FP-~~RG~a~Gl~ 165 (564)
++++.+++.+|-++......+.. -..+++.+...=++.|+|.|..+..+..-...+.| ++||...++.
T Consensus 88 l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~ 167 (491)
T 4gc0_A 88 LKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFN 167 (491)
T ss_dssp HHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhh
Confidence 99999999999887432211110 01467888888999999999999999999999998 5799988877
Q ss_pred hhhhhhhHHH
Q 008482 166 KGFVGLSGAI 175 (564)
Q Consensus 166 ~a~~GLsa~i 175 (564)
..+..++..+
T Consensus 168 ~~~~~~g~~~ 177 (491)
T 4gc0_A 168 QFAIIFGQLL 177 (491)
T ss_dssp HHHHHHHHHH
T ss_pred hhhhhhhhhh
Confidence 7666666544
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=98.98 E-value=5.1e-09 Score=112.13 Aligned_cols=175 Identities=14% Similarity=0.140 Sum_probs=136.6
Q ss_pred HHHHHHHHHHHhhhhchhheecchhHHHhh------cCCCccchhHHHHHHHHHHHHhhhhhhhhhhh-hhhcccCchhH
Q 008482 350 LEFWILSFAMACGMGSGLATVNNISQIGGS------LGYSSFETSSLISLWSIWNFLGRFGAGYVSDY-FLHVKEWARPL 422 (564)
Q Consensus 350 ~~Fwll~~~~~~~~g~gl~~i~n~~~i~~~------~g~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~-l~~~~~~~R~~ 422 (564)
+.+|.+++..++....-..+...+.+..++ +|.++.+.+...++..+.+.++.+.+|+++|| ++ |.+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g------~r~ 86 (491)
T 4aps_A 13 LGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIG------ARP 86 (491)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC------HHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc------chH
Confidence 467888777777665555565666676654 79998889999999999999999999999999 85 445
Q ss_pred HHHHHHHHHHHHHHHHHhc-CcchHHHHHHHHHhhhccccchhHHHHHHhhccCc--hhhhhhhHhhhhhhHHHhhhhhh
Q 008482 423 FMVITLAAMSIGHLIIASG-LPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQ--MGTIFNTITIANPVGSYIFSVRV 499 (564)
Q Consensus 423 ~l~~~~~l~~i~~ll~~~~-~~~~l~~~~~l~G~~~G~~~~~~P~ivse~FG~k~--fg~nyg~~~~a~~iG~~lf~~~l 499 (564)
.+....++.+++.++.... ....++++-++.|++.|......+++++|.|..++ -+..+++...+..+|.. +++.+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~-~~~~~ 165 (491)
T 4aps_A 87 AVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAF-IAPLI 165 (491)
T ss_dssp HHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHH-HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHH-HHHHH
Confidence 5666667777776665533 34457778889999999999999999999999887 67778877777777774 57778
Q ss_pred hhhhhhcccCCCCccccCCcccHHHHHHHHHHHHHHHHHHHHHH
Q 008482 500 VGYIYDREASGEGNKCTGTHCFMLSFFIMGSATLCGSLAAFGLF 543 (564)
Q Consensus 500 ~g~iyD~~~~~~~~~C~G~~Cy~~af~i~~~l~v~a~vl~~~l~ 543 (564)
.|.+.|..+ ++..|.+.++.+++++++.++..
T Consensus 166 ~~~l~~~~g------------~~~~f~~~~~~~~~~~~~~~~~~ 197 (491)
T 4aps_A 166 VGAAQEAAG------------YHVAFSLAAIGMFIGLLVYYFGG 197 (491)
T ss_dssp HHHHHHHSC------------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhh------------HHHHHHHHHHHHHHHHHHHHHhC
Confidence 888888654 79999998887777776655443
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=98.94 E-value=4.7e-09 Score=110.45 Aligned_cols=176 Identities=15% Similarity=0.068 Sum_probs=133.7
Q ss_pred hcHHHHHHHHHHHhhhhchhheecchhHHHhhcCCCccchhHHHHHHHHHHHHhhhhhhhhhhhhhhcccCchhHHHHHH
Q 008482 348 CTLEFWILSFAMACGMGSGLATVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVIT 427 (564)
Q Consensus 348 ~t~~Fwll~~~~~~~~g~gl~~i~n~~~i~~~~g~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~R~~~l~~~ 427 (564)
+.+.++.+++..++....-.++..-+..+.++. .++.+.+...++..+...++.+.+|+++||++ |..++.+.
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g------~r~~l~~~ 98 (451)
T 1pw4_A 26 RWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSN------PRVFLPAG 98 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSC------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcC------chHHHHHH
Confidence 344556666555555443333444566677788 88888999999999999999999999999995 44456666
Q ss_pred HHHHHHHHHHHHh-----cCcchHHHHHHHHHhhhccccchhHHHHHHhhccCchhhhhhhHhhhhhhHHHhhhhhhhhh
Q 008482 428 LAAMSIGHLIIAS-----GLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGY 502 (564)
Q Consensus 428 ~~l~~i~~ll~~~-----~~~~~l~~~~~l~G~~~G~~~~~~P~ivse~FG~k~fg~nyg~~~~a~~iG~~lf~~~l~g~ 502 (564)
.++.+++.++... .....++++-++.|++.|..+....++++|.+..|+-++..|+...+..+|.. +++.+.+.
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~-~g~~~~~~ 177 (451)
T 1pw4_A 99 LILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGG-IPPLLFLL 177 (451)
T ss_dssp HHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHT-SHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 6677777665543 33446777889999999999999999999999999999999999888888885 57777888
Q ss_pred hhhcccCCCCccccCCcccHHHHHHHHHHHHHHHHHHHHH
Q 008482 503 IYDREASGEGNKCTGTHCFMLSFFIMGSATLCGSLAAFGL 542 (564)
Q Consensus 503 iyD~~~~~~~~~C~G~~Cy~~af~i~~~l~v~a~vl~~~l 542 (564)
+.+..++ ++.+|++.++++++..++..+.
T Consensus 178 l~~~~g~-----------w~~~f~~~~~~~~~~~~~~~~~ 206 (451)
T 1pw4_A 178 GMAWFND-----------WHAALYMPAFCAILVALFAFAM 206 (451)
T ss_dssp HHHHTCC-----------STTCTHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcc-----------HHHHHHHHHHHHHHHHHHHHhh
Confidence 8876553 5788888887777766555443
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=9.5e-08 Score=100.15 Aligned_cols=125 Identities=12% Similarity=0.087 Sum_probs=102.2
Q ss_pred hhHHHhhcCCCccchhHHHHHHHHHHHHhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHH---Hh-cCcchHHH
Q 008482 373 ISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLII---AS-GLPGALYA 448 (564)
Q Consensus 373 ~~~i~~~~g~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~R~~~l~~~~~l~~i~~ll~---~~-~~~~~l~~ 448 (564)
+..+.+++|.++.+.+...++..+...++.+.+|+++||++ |.+.+....++.+++.++. .. .....+++
T Consensus 49 ~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g------~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 122 (438)
T 3o7q_A 49 LPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLS------YKAGIITGLFLYALGAALFWPAAEIMNYTLFLV 122 (438)
T ss_dssp HHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSC------HHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhc------chHHHHHHHHHHHHHHHHHHhccccccHHHHHH
Confidence 55566788999999999999999999999999999999995 4445666666777666554 33 23335777
Q ss_pred HHHHHHhhhccccchhHHHHHHhhccCchhhhhhhHhhhhhhHHHhhhhhhhhhhh
Q 008482 449 GSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIY 504 (564)
Q Consensus 449 ~~~l~G~~~G~~~~~~P~ivse~FG~k~fg~nyg~~~~a~~iG~~lf~~~l~g~iy 504 (564)
+-++.|++.|......+++++|.+..|+-+...|+...+..+|.. +++.+.+.+.
T Consensus 123 ~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~-~g~~~~~~l~ 177 (438)
T 3o7q_A 123 GLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAI-IAVVFGQSLI 177 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHH-HHHHHTTHHH
T ss_pred HHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 789999999999999999999999999999989988888888885 5677788877
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=98.68 E-value=7.1e-08 Score=104.15 Aligned_cols=173 Identities=14% Similarity=0.169 Sum_probs=127.4
Q ss_pred cHHHHHHHHHHHhhhhchhheecchhHHH-hhcC------CCccchhHHHHHHHHHHHHhhhhhhhhhhhh-hhcccCch
Q 008482 349 TLEFWILSFAMACGMGSGLATVNNISQIG-GSLG------YSSFETSSLISLWSIWNFLGRFGAGYVSDYF-LHVKEWAR 420 (564)
Q Consensus 349 t~~Fwll~~~~~~~~g~gl~~i~n~~~i~-~~~g------~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~l-~~~~~~~R 420 (564)
++.+|++++..++....-.++...+.... +++| .++.+.+...++..+...++.+.+|+++||+ ++|
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r----- 85 (524)
T 2xut_A 11 PRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKY----- 85 (524)
T ss_dssp --CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSH-----
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch-----
Confidence 35678777777776665555656666655 4578 8888899999999999999999999999999 753
Q ss_pred hHHHHHHHHHHHHHHHHHHh-c-CcchHHHHHHHHHhhhccccchhHHHHHHhhccCchhh---hhhhHhhhhhhHHHhh
Q 008482 421 PLFMVITLAAMSIGHLIIAS-G-LPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGT---IFNTITIANPVGSYIF 495 (564)
Q Consensus 421 ~~~l~~~~~l~~i~~ll~~~-~-~~~~l~~~~~l~G~~~G~~~~~~P~ivse~FG~k~fg~---nyg~~~~a~~iG~~lf 495 (564)
..+.+..++.+++.++... . ....+++..++.|++.|......+++++|.|..++-++ .+|+...+..+|.. +
T Consensus 86 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~-~ 163 (524)
T 2xut_A 86 -NTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSF-F 163 (524)
T ss_dssp -HHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHH-H
T ss_pred -HHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHH-H
Confidence 2344555566666555443 2 33457777889999999999999999999999888753 45557777777774 5
Q ss_pred hhhhhhhhhhcccCCCCccccCCcccHHHHHHHHHHHHHHHHHHH
Q 008482 496 SVRVVGYIYDREASGEGNKCTGTHCFMLSFFIMGSATLCGSLAAF 540 (564)
Q Consensus 496 ~~~l~g~iyD~~~~~~~~~C~G~~Cy~~af~i~~~l~v~a~vl~~ 540 (564)
++.+.|.+.|..+ ++..|.+.+++.+++.++.+
T Consensus 164 g~~~~~~l~~~~g------------~~~~f~~~~~~~~~~~~~~~ 196 (524)
T 2xut_A 164 ASLSMPLLLKNFG------------AAVAFGIPGVLMFVATVFFW 196 (524)
T ss_dssp HHHTSTHHHHTSC------------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccc------------HHHHHHHHHHHHHHHHHHHH
Confidence 6667888887643 78999988877776664443
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.68 E-value=1.1e-08 Score=105.43 Aligned_cols=165 Identities=12% Similarity=0.137 Sum_probs=124.3
Q ss_pred HHHHHHHhhhhchhheecchhHHHhhcCCCccchhHHHHHHHHHHHHhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHH
Q 008482 354 ILSFAMACGMGSGLATVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSI 433 (564)
Q Consensus 354 ll~~~~~~~~g~gl~~i~n~~~i~~~~g~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~R~~~l~~~~~l~~i 433 (564)
++++..++......++...+..+.++.|.++.+.+...++..+.+.++.+.+|+++||++||+. +.....+.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~------~~~~~~~~~~ 77 (375)
T 2gfp_A 4 MLVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPV------ILVGMSIFML 77 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCC------CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchh------HHHHHHHHHH
Confidence 3444444443334444455677778899999889999999999999999999999999976543 3344445555
Q ss_pred HHHHHHh-cCcchHHHHHHHHHhhhccccchhHHHHHHhhccCchhhhhhhHhhhhhhHHHhhhhhhhhhhhhcccCCCC
Q 008482 434 GHLIIAS-GLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASGEG 512 (564)
Q Consensus 434 ~~ll~~~-~~~~~l~~~~~l~G~~~G~~~~~~P~ivse~FG~k~fg~nyg~~~~a~~iG~~lf~~~l~g~iyD~~~~~~~ 512 (564)
+.++... .....+++..++.|++.|......+++++|.+..|+.++..++...+..+|.. +++.+.+.+.|..+
T Consensus 78 ~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~l~~~~~---- 152 (375)
T 2gfp_A 78 ATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPL-LAPLIGGLLDTMWN---- 152 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHH-HHHHHHHHSSCHHH----
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHhcc----
Confidence 5444332 23335677788999999999999999999999999999999999888888885 57778888887643
Q ss_pred ccccCCcccHHHHHHHHHHHHHHHH
Q 008482 513 NKCTGTHCFMLSFFIMGSATLCGSL 537 (564)
Q Consensus 513 ~~C~G~~Cy~~af~i~~~l~v~a~v 537 (564)
++.+|.+..+++++..+
T Consensus 153 --------~~~~~~~~~~~~~~~~~ 169 (375)
T 2gfp_A 153 --------WRACYLFLLVLCAGVTF 169 (375)
T ss_dssp --------HHHHHHHHHHHHHHHHC
T ss_pred --------HHHHHHHHHHHHHHHHH
Confidence 68888887777666554
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=98.13 E-value=1.2e-06 Score=92.39 Aligned_cols=169 Identities=16% Similarity=0.159 Sum_probs=99.9
Q ss_pred HhhcHHHHHHHHHHHhhhhchhheecchhHHHhh-cCCCccchhHHHHHHHHHHHHhhhhhhhhhhhhhhcccCchhHHH
Q 008482 346 AICTLEFWILSFAMACGMGSGLATVNNISQIGGS-LGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFM 424 (564)
Q Consensus 346 ~l~t~~Fwll~~~~~~~~g~gl~~i~n~~~i~~~-~g~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~R~~~l 424 (564)
.+|+++||.+...+++......++..-++...++ .|.++.+....+++..+...++++.+|+++||++||+. +
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~------l 76 (417)
T 2cfq_A 3 YLKNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKY------L 76 (417)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCH------H
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH------H
Confidence 5789999999887776655545556667776654 79999899999999999999999999999999986532 2
Q ss_pred HHHHHHHHH---HHHHHHhc--CcchHHHHHHHHHhhhccccchhHHHHHHhhc--cCchhhhhhhHhhhhhhHHHhhhh
Q 008482 425 VITLAAMSI---GHLIIASG--LPGALYAGSILVGVCYGSQWSLMPTIASEIFG--VLQMGTIFNTITIANPVGSYIFSV 497 (564)
Q Consensus 425 ~~~~~l~~i---~~ll~~~~--~~~~l~~~~~l~G~~~G~~~~~~P~ivse~FG--~k~fg~nyg~~~~a~~iG~~lf~~ 497 (564)
.....+.++ ..+..... ....++....+.|+..|..++....++.++.- .|+.+..+|....+..+|.. +++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~-~~~ 155 (417)
T 2cfq_A 77 LWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWA-LGA 155 (417)
T ss_dssp HHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHH-HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHH-HHH
Confidence 222222111 11111100 00012223333344444333333333333332 24556667776555555553 455
Q ss_pred hhhhhhhhcccCCCCccccCCcccHHHHHHHHHHHHH
Q 008482 498 RVVGYIYDREASGEGNKCTGTHCFMLSFFIMGSATLC 534 (564)
Q Consensus 498 ~l~g~iyD~~~~~~~~~C~G~~Cy~~af~i~~~l~v~ 534 (564)
.+.|.+.|. + ++..|++.++..++
T Consensus 156 ~l~~~l~~~-~------------~~~~f~~~~~~~~~ 179 (417)
T 2cfq_A 156 SIVGIMFTI-N------------NQFVFWLGSGCALI 179 (417)
T ss_dssp HHHHHHHHH-C------------SHHHHTTTTTTTTT
T ss_pred HHHHHHHHh-c------------hhHHHHHHHHHHHH
Confidence 567777764 2 57788766555433
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=97.95 E-value=1.8e-05 Score=84.25 Aligned_cols=101 Identities=20% Similarity=0.116 Sum_probs=78.9
Q ss_pred hhHHHHHHHHHHHHhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHh-------------------cCcchHH
Q 008482 387 TSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIAS-------------------GLPGALY 447 (564)
Q Consensus 387 aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~R~~~l~~~~~l~~i~~ll~~~-------------------~~~~~l~ 447 (564)
.+..+|.+.++..+|-+++|+++||+| |.+.+.+..++..++.++.+. .....++
T Consensus 57 ~g~~~s~~~~G~~iG~~~~G~laDr~G------Rk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~ 130 (491)
T 4gc0_A 57 LGFCVASALIGCIIGGALGGYCSNRFG------RRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFV 130 (491)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHHTC------HHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc------CHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHH
Confidence 356778888999999999999999995 445566666666666554331 1222467
Q ss_pred HHHHHHHhhhccccchhHHHHHHhhccCchhhhhhhHhhhhhhHHH
Q 008482 448 AGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSY 493 (564)
Q Consensus 448 ~~~~l~G~~~G~~~~~~P~ivse~FG~k~fg~nyg~~~~a~~iG~~ 493 (564)
++=.+.|++.|+...+.|.+++|....++-|..-++...+..+|..
T Consensus 131 ~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~ 176 (491)
T 4gc0_A 131 IYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQL 176 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhh
Confidence 7778999999999999999999999999888888887777777764
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 564 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.92 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.76 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 98.93 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 98.31 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.92 E-value=4.7e-25 Score=229.55 Aligned_cols=411 Identities=16% Similarity=0.127 Sum_probs=260.9
Q ss_pred hhchhHHHHHHHHHHHHhcC-cccccccccHHHHhhcCCCcchhhHHHHhhhhhccc-cccchhhhccccCCCCCCCccc
Q 008482 8 RLNTRWVSTVASIWIQCTSG-SLYTFSIYSPALKTTQHYDQTTLDTVSVFKDIGANT-GTLSGVLYTYSTSDHSSHHPRQ 85 (564)
Q Consensus 8 ~~~~Rw~~l~a~~~i~l~~G-~~Y~fS~ys~~L~~~lg~sq~~~~~i~~a~~vg~~~-g~~~G~l~d~~~~~~~~~~~~~ 85 (564)
..+.||.+++...+...+.. ....+++..|.++ ++|+|.+|+..+.++..++..+ .++.|.+.||+|
T Consensus 19 ~~~~~w~i~~~~~~~~~~~~~~~~~~~~~~p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g---------- 87 (447)
T d1pw4a_ 19 YRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSN---------- 87 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSC----------
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC----------
Confidence 33457887766655444433 2356788778776 4899999999998888888866 678898888875
Q ss_pred hhhhcccCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHhhhcCC-CCcceeee
Q 008482 86 QRLTRLLGPWVVLLVGAIQCFAGYFLMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFPT-YSGTAVGI 164 (564)
Q Consensus 86 ~~~~~~~GP~~~~~iG~vl~~~Gy~~~~l~~~g~i~~~~~~~l~~~~~l~G~g~~~~~ta~l~t~~k~FP~-~RG~a~Gl 164 (564)
+|.++.+|.++..++.++........ .+++.+....++.|.+.+..+.++.....++||+ +||++.|+
T Consensus 88 --------~r~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~ 156 (447)
T d1pw4a_ 88 --------PRVFLPAGLILAAAVMLFMGFVPWAT---SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSV 156 (447)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHCHHHH---SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHH
T ss_pred --------chHHHHHHHHHHHHHHhhccccchhh---hhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccc
Confidence 99999999999999998754432211 2355677788889999999999999999999985 69999999
Q ss_pred ehhhhhhhHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhhhhheeeeeccCCCCcccccchhHHHHHHHHHHHHHHHHHH
Q 008482 165 MKGFVGLSGAILIQVYQTFFNNKPTSYLLLLALLASIDPLLLMWFVRICNTNEGNEKKHLNSFSLIALIVAAYLMVIIIL 244 (564)
Q Consensus 165 ~~a~~GLsa~i~s~i~~~~f~~~~~~~llfla~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~y~~~~~~~ 244 (564)
...+.++++.+...+.. ... ... .+....+ ....+... +.
T Consensus 157 ~~~~~~~g~~i~~~~~~----------------------~~~----~~~----~~w~~~~---~~~~~~~~---~~---- 196 (447)
T d1pw4a_ 157 WNCAHNVGGGIPPLLFL----------------------LGM----AWF----NDWHAAL---YMPAFCAI---LV---- 196 (447)
T ss_dssp HHHHHHHHHTSHHHHHH----------------------HHH----HHT----CCSTTCT---HHHHHHHH---HH----
T ss_pred cccccchhhhhhhhhhh----------------------hHh----hhh----hcccccc---hhhhhhHH---HH----
Confidence 98888888766432111 100 000 0011111 11000000 00
Q ss_pred hhhccCchHHHHHHHHHHHHHHhhhhhhhhhccCCCCCCCCcCccccCCCCCCCccchhhhccccCCCCCCCCCCCCCCC
Q 008482 245 EHIFALPFLVRVLTLILLLLLLASPLYVAIRVQGSDSDRTSETSFCEEDELTDDPHEMHAEKMHVRQDPVGYHRLPSEPD 324 (564)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~ll~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (564)
.++... ..+.++++..... +++...+. +++.. ++.
T Consensus 197 -----------------~~~~~~-----~~~~~~~~~~~~~-----~~~~~~~~--------------~~~~~---~~~- 231 (447)
T d1pw4a_ 197 -----------------ALFAFA-----MMRDTPQSCGLPP-----IEEYKNDY--------------PDDYN---EKA- 231 (447)
T ss_dssp -----------------HHHHHH-----HCCCSSTTTCCCS-----CTTTCCC---------------------------
T ss_pred -----------------HHHHHH-----hcccchhhcccch-----hhhhhhhc--------------ccchh---hcc-
Confidence 000000 0011111100000 00000000 00000 000
Q ss_pred CCCCCCCCCccCCCCCCcHHHHhhcHHHHHHHHHHHhhhhchhheecchhHHHhh-cCCCccchhHHHHHHHHHHHHhhh
Q 008482 325 VGTDTNDATTSLWGGDLDLLQAICTLEFWILSFAMACGMGSGLATVNNISQIGGS-LGYSSFETSSLISLWSIWNFLGRF 403 (564)
Q Consensus 325 ~~~~~~~~~~~~~~~~~t~~~~l~t~~Fwll~~~~~~~~g~gl~~i~n~~~i~~~-~g~~~~~aa~~Vsl~si~n~~GRl 403 (564)
.+.....+...++.++++.+|.+....++.......+.+....+.++ .+.+..+.+...++..+.+.+|++
T Consensus 232 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (447)
T d1pw4a_ 232 --------EQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTL 303 (447)
T ss_dssp ------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred --------ccccchhhHHHHHHHcCchHHHHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhh
Confidence 00011123345788999999999998888877776776666666655 578888888999999999999999
Q ss_pred hhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHh---cCcchHHHHHHHHHhhhccccchhHHHHHHhhccCchhhh
Q 008482 404 GAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIAS---GLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTI 480 (564)
Q Consensus 404 ~~G~lsD~l~~~~~~~R~~~l~~~~~l~~i~~ll~~~---~~~~~l~~~~~l~G~~~G~~~~~~P~ivse~FG~k~fg~n 480 (564)
+.|+++||+.+++. .........+..++.++... ..+...++..++.|++.++........+.|.+..++.|+.
T Consensus 304 ~~g~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~ 380 (447)
T d1pw4a_ 304 LCGWMSDKVFRGNR---GATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTA 380 (447)
T ss_dssp HHHHHHHHTSTTCH---HHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHH
T ss_pred hhhhhhhhcccccc---ccccchhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence 99999999976532 22222222222223222221 1222355566788999999999999999999999999999
Q ss_pred hhhHhhhhhhHHHhhhhhhhhhhhhcccCCCCccccCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 008482 481 FNTITIANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSFFIMGSATLCGSLAAFGLFLRTKR 548 (564)
Q Consensus 481 yg~~~~a~~iG~~lf~~~l~g~iyD~~~~~~~~~C~G~~Cy~~af~i~~~l~v~a~vl~~~l~~r~~~ 548 (564)
.|+......+++.+.++.+.|.+.|..+ ++..|.+..++++++.++..++..+.||
T Consensus 381 ~g~~~~~~~~~g~~~~~~~~g~~~~~~g------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (447)
T d1pw4a_ 381 AGFTGLFGYLGGSVAASAIVGYTVDFFG------------WDGGFMVMIGGSILAVILLIVVMIGEKR 436 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSSC------------SHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhC------------hHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9988765555443567778999999876 5888998888888888777665544433
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.76 E-value=4.1e-18 Score=171.86 Aligned_cols=394 Identities=14% Similarity=0.027 Sum_probs=227.9
Q ss_pred hhhhhchhHHHHHHHHHHHHhcCcccccccccHHHHhhcCCCcchhhHHHHhhhhhccc-cccchhhhccccCCCCCCCc
Q 008482 5 KQLRLNTRWVSTVASIWIQCTSGSLYTFSIYSPALKTTQHYDQTTLDTVSVFKDIGANT-GTLSGVLYTYSTSDHSSHHP 83 (564)
Q Consensus 5 ~~~~~~~Rw~~l~a~~~i~l~~G~~Y~fS~ys~~L~~~lg~sq~~~~~i~~a~~vg~~~-g~~~G~l~d~~~~~~~~~~~ 83 (564)
...+.+|.|+..+.-.+..+..|.. ++.+...+++++|+|.+|+..+..+..++..+ .++.|.+.||+|
T Consensus 2 ~~lkn~~~~~l~~~~f~~~~~~~~~--~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~g-------- 71 (417)
T d1pv7a_ 2 YYLKNTNFWMFGLFFFFYFFIMGAY--FPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLG-------- 71 (417)
T ss_dssp HHHHSHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHT--------
T ss_pred CcccCchHHHHHHHHHHHHHHHHHH--HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------
Confidence 3445567787766666666665543 45555568999999999999888888888765 678999999875
Q ss_pred cchhhhcccCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHhhhcC---CCCcc
Q 008482 84 RQQRLTRLLGPWVVLLVGAIQCFAGYFLMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFP---TYSGT 160 (564)
Q Consensus 84 ~~~~~~~~~GP~~~~~iG~vl~~~Gy~~~~l~~~g~i~~~~~~~l~~~~~l~G~g~~~~~ta~l~t~~k~FP---~~RG~ 160 (564)
+|.+++++.+...++..+.......... .........+.+.+.+..+.+.........+ ++++.
T Consensus 72 ----------rr~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (417)
T d1pv7a_ 72 ----------LRKYLLWIITGMLVMFAPFFIFIFGPLL---QYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNF 138 (417)
T ss_dssp ----------TCTHHHHHHHHHHHTHHHHHHHTHHHHH---HTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSC
T ss_pred ----------chHHHHHHHHHHHHHHHHHHHhhhhhhH---HHHHHHHHHHhhhcccccccchhhcccccccchhhhhHH
Confidence 8888888888888887776554322210 1112233444455555555555544444443 23444
Q ss_pred eeeeehhhhhhhHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhhhhheeeeeccCCCCcccccchhHHHHHHHHHHHHHH
Q 008482 161 AVGIMKGFVGLSGAILIQVYQTFFNNKPTSYLLLLALLASIDPLLLMWFVRICNTNEGNEKKHLNSFSLIALIVAAYLMV 240 (564)
Q Consensus 161 a~Gl~~a~~GLsa~i~s~i~~~~f~~~~~~~llfla~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~y~~~ 240 (564)
..+......+.+..+. |.+...+. .. . ... .+.. ......+
T Consensus 139 ~~~~~~~~~~~~~~~~----------------------~~~~~~l~----~~---~---~~~---~~~~---~~~~~~~- 179 (417)
T d1pv7a_ 139 EFGRARMFGCVGWALG----------------------ASIVGIMF----TI---N---NQF---VFWL---GSGCALI- 179 (417)
T ss_dssp CHHHHHHHHHHHHHHH----------------------HHHHHHHH----HH---C---HHH---HHHH---HHHHHHH-
T ss_pred HHHHHhhhhccccccc----------------------cccccccc----cc---c---ccc---cccc---hhhHHHH-
Confidence 4444444444433332 22221111 00 0 000 0000 0000000
Q ss_pred HHHHhhhccCchHHHHHHHHHHHHHHhhhhhhhhhccCCCCCCCCcCccccCCCCCCCccchhhhccccCCCCCCCCCCC
Q 008482 241 IIILEHIFALPFLVRVLTLILLLLLLASPLYVAIRVQGSDSDRTSETSFCEEDELTDDPHEMHAEKMHVRQDPVGYHRLP 320 (564)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (564)
..+++.. ..+.+++ ++. .+++ ++ +
T Consensus 180 ---------------------~~~~~~~----~~~~~~~--~~~-------------~~~~---~~-------~------ 203 (417)
T d1pv7a_ 180 ---------------------LAVLLFF----AKTDAPS--SAT-------------VANA---VG-------A------ 203 (417)
T ss_dssp ---------------------HHHHHHS----SCCCSCS--SSC-------------SSHH---HH-------S------
T ss_pred ---------------------HHHHHHH----Hhccccc--chh-------------hhhh---hh-------h------
Confidence 0000000 0000000 000 0000 00 0
Q ss_pred CCCCCCCCCCCCCccCCCCCCcHHHHhhcHHHHHHHHHHHhhhhchhheecchhHHHhhc----CCCccchhHHHHHHHH
Q 008482 321 SEPDVGTDTNDATTSLWGGDLDLLQAICTLEFWILSFAMACGMGSGLATVNNISQIGGSL----GYSSFETSSLISLWSI 396 (564)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~t~~~~l~t~~Fwll~~~~~~~~g~gl~~i~n~~~i~~~~----g~~~~~aa~~Vsl~si 396 (564)
+. +........+..+.+..|.+.....+................... +.+........+...+
T Consensus 204 -~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (417)
T d1pv7a_ 204 -NH------------SAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGEL 270 (417)
T ss_dssp -CC------------CCCCHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHH
T ss_pred -hc------------ccccccccccccccccccchhhhhHHHHHHHHhhhccccccccccccccccchhhhccccccccc
Confidence 00 000112334555666666665555554443333322222222222 2223334566777788
Q ss_pred HHHHhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHhc-CcchHHHHHHHHHhhhccccchhHHHHHHhhccC
Q 008482 397 WNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIASG-LPGALYAGSILVGVCYGSQWSLMPTIASEIFGVL 475 (564)
Q Consensus 397 ~n~~GRl~~G~lsD~l~~~~~~~R~~~l~~~~~l~~i~~ll~~~~-~~~~l~~~~~l~G~~~G~~~~~~P~ivse~FG~k 475 (564)
....++...|.+.||.+ |...+.+...+.+++.+++... ....+++..++.|+++|..+....+++.|.+..+
T Consensus 271 ~~~~~~~~~~~l~~r~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~ 344 (417)
T d1pv7a_ 271 LNASIMFFAPLIINRIG------GKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVR 344 (417)
T ss_dssp HHHHHHTTHHHHHHHHC------HHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGG
T ss_pred ccccchhhhhhhhcccc------cccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHh
Confidence 88899999999999984 4445666666666666655433 3345677788999999999999999999999999
Q ss_pred chhhhhhhH-hhhhhhHHHhhhhhhhhhhhhcccCCCCccccCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 008482 476 QMGTIFNTI-TIANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSFFIMGSATLCGSLAAFGLFLRTKR 548 (564)
Q Consensus 476 ~fg~nyg~~-~~a~~iG~~lf~~~l~g~iyD~~~~~~~~~C~G~~Cy~~af~i~~~l~v~a~vl~~~l~~r~~~ 548 (564)
+-|+.+|+. .++..+|.. +++.+.|.++|..+ |+.+|++.+++++++.+++++..+++++
T Consensus 345 ~~~~~~~~~~~~~~~~g~~-i~~~~~G~l~~~~g------------~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 405 (417)
T d1pv7a_ 345 FSATIYLVCFCFFKQLAMI-FMSVLAGNMYESIG------------FQGAYLVLGLVALGFTLISVFTLSGPGP 405 (417)
T ss_dssp GHHHHHHHHHTTTHHHHHH-HHHHHHHHHHHHHC------------HHHHHHHHHHHHHHHHHHHHHHSCCSSC
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHC------------HHHHHHHHHHHHHHHHHHHHHhhcCCCc
Confidence 999999975 456667774 56678999999876 6899999998888888777777655544
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=98.93 E-value=1.1e-09 Score=111.84 Aligned_cols=172 Identities=16% Similarity=0.126 Sum_probs=125.0
Q ss_pred HHHHHHHHhhhhchhh---eecchhHHHhhcCCCccchhHHHHHHHHHHHHhhhhhhhhhhhhhhcccCchhHHHHHHHH
Q 008482 353 WILSFAMACGMGSGLA---TVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLA 429 (564)
Q Consensus 353 wll~~~~~~~~g~gl~---~i~n~~~i~~~~g~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~R~~~l~~~~~ 429 (564)
|.+++..+++.....+ .++.+.+..++.|.++.+.+...+++.+...++.+.+|+++||+++ ...+.+..+
T Consensus 24 w~i~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~------r~~~~~~~~ 97 (447)
T d1pw4a_ 24 WQIFLGIFFGYAAYYLVRKNFALAMPYLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNP------RVFLPAGLI 97 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHTSHHHHHHHTTSSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCH------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc------hHHHHHHHH
Confidence 5555544444333322 2344456667789999999999999999999999999999999954 445566666
Q ss_pred HHHHHHHHHHh-----cCcchHHHHHHHHHhhhccccchhHHHHHHhhccCchhhhhhhHhhhhhhHHHhhhhhhhhhhh
Q 008482 430 AMSIGHLIIAS-----GLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIY 504 (564)
Q Consensus 430 l~~i~~ll~~~-----~~~~~l~~~~~l~G~~~G~~~~~~P~ivse~FG~k~fg~nyg~~~~a~~iG~~lf~~~l~g~iy 504 (564)
+.+++.++... .....+++.-++.|++.|..+...+.+++|+|..|+-|+..|+...+..+|.. +++.+.+.+.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~-i~~~~~~~~~ 176 (447)
T d1pw4a_ 98 LAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGG-IPPLLFLLGM 176 (447)
T ss_dssp HHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHT-SHHHHHHHHH
T ss_pred HHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhh-hhhhhhhhHh
Confidence 66666554432 23345777788999999999999999999999999999999999888888875 4665677666
Q ss_pred hcccCCCCccccCCcccHHHHHHHHHHHHHHHHHHHHH
Q 008482 505 DREASGEGNKCTGTHCFMLSFFIMGSATLCGSLAAFGL 542 (564)
Q Consensus 505 D~~~~~~~~~C~G~~Cy~~af~i~~~l~v~a~vl~~~l 542 (564)
+...+ ++..|.+...++++..++.+..
T Consensus 177 ~~~~~-----------w~~~~~~~~~~~~~~~~~~~~~ 203 (447)
T d1pw4a_ 177 AWFND-----------WHAALYMPAFCAILVALFAFAM 203 (447)
T ss_dssp HHTCC-----------STTCTHHHHHHHHHHHHHHHHH
T ss_pred hhhhc-----------ccccchhhhhhHHHHHHHHHHh
Confidence 66555 4677777766666655444443
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=98.31 E-value=6.1e-07 Score=88.46 Aligned_cols=71 Identities=15% Similarity=0.024 Sum_probs=57.3
Q ss_pred HhhcHHHHHHHHHHHhhhhchhheecchhHHH-hhcCCCccchhHHHHHHHHHHHHhhhhhhhhhhhhhhcc
Q 008482 346 AICTLEFWILSFAMACGMGSGLATVNNISQIG-GSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVK 416 (564)
Q Consensus 346 ~l~t~~Fwll~~~~~~~~g~gl~~i~n~~~i~-~~~g~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~ 416 (564)
.+|+++||++.+.+++.....-++..-++... ++.|.++.+.+...++..+...++.+.+|+++||++||+
T Consensus 3 ~lkn~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~ 74 (417)
T d1pv7a_ 3 YLKNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRK 74 (417)
T ss_dssp HHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCT
T ss_pred cccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchH
Confidence 47999999999888776544444444555544 457999999999999999999999999999999997643
|