Citrus Sinensis ID: 008492

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560---

MDWCVRARKVALKSIEARGLASSMEDLIKVKKKKKKGKKKLEKIKKKNKVTDDDLDFDLEDDMKMDDIMGSGNGYDMNDLRRTVSMMAGGMFEEKREKTIEEFVHRLSQFSGPSNRRKEINLNKDIVDAQTAQEVLEVIAEMITAVGKGLSPSPLSPLNIATALHRIAKNMEKVSMMTTHRLAFTRQREMSMLVAIAMTALPECSAQGISNIAWALSKIGGELLYLSEMDRVAEVALTKVGEFNSQNVANVAGAFASMQHSAPDLFSELAKRASDIVHTFQEQELAQVLWAFASLYEPADPLLESLDNAFKDATQFTCCLNKALSNCNENGGVKSSGDADSEGSLSSPVLSFNRDQLGNIAWSYAVLGQMDRIFFSDIWKTISRFEEQRISEQYREDIMFASQVHLVNQCLKLEHPHLQLALSSVLEEKIASAGKTKRFNQKVTSSFQKEVARLLVSTGLNWIREYAVDGYTVDAVLVDKKVAFEIDGPTHFSRNTGVPLGHTMLKRRYIAAAGWNVVSLSHQEWEELQGSFEQLDYLRVILKDYIGGEGSSNIAETLKMDAV

cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHccccccccccccHHHHHHHHHHccccccccccHHHHHHHHHHcccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHccHHHHHHHHHHcccccccccccccHHHHHHHHHHcccccccEEEEEccccccccccccEEEEEEccccccccccccccHHHHHHHHHHHHcccEEEEEcHHHHHHcccHHHHHHHHHHHHHHHHcccccccHHHHHccccc

ccHHHHHHHHHHHHHHHccccHHHHHHccccHHHcHHHHHHHHHHHHHHHHccccccccccccccHHcccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccccccccHEEEHcHHHHHHccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHccHHHHHHHccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccHccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHccHHccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccEEEEEcccEEEEEEEcccEEEEEEcccccccccccccccHHHHHHHHHHHcccEEEEEcHHHHHHcccHHHHHHHHHHHHHHHcccccccccccccccccc

MDWCVRARKVALKSIEARGLASSMEDLIKVKKKKKKGKKKLEKIKKknkvtdddldfdleddmkmddimgsgngydmndlRRTVSMMAGGMFEEKREKTIEEFVHRLsqfsgpsnrrkeinlnkdIVDAQTAQEVLEVIAEMITAVgkglspsplsplNIATALHRIAKNMEKVSMMTTHRLAFTRQREMSMLVAIAMTALPECSAQGISNIAWALSKIGGELLYLSEMDRVAEVALTKvgefnsqnVANVAGAFASMQHSAPDLFSELAKRASDIVHTFQEQELAQVLWAFAslyepadpllESLDNAFKDATQFTCCLNKALsncnenggvkssgdadsegslsspvlsfnrdqlgNIAWSYAVLGQMDRIFFSDIWKTISRFEEQRISEQYREDIMFASQVHLVNQCLKLEHPHLQLALSSVLEEKIAsagktkrfnQKVTSSFQKEVARLLVSTGLNWIREYAVDGYTVDAVLVDKKvafeidgpthfsrntgvplghTMLKRRYIAAAGWNVVSLSHQEWEELQGSFEQLDYLRVILKDyiggegssnIAETLKMDAV

MDWCVRARKVAlksiearglassmedlikvkkkkkkgkkklekikkknkvtdddldfdleDDMKMDDImgsgngydmndLRRTVSMMAGGMFEEKREKTIEEFVHrlsqfsgpsnrrkeINLNKDIVDAQTAQEVLEVIAEMITAVGkglspsplSPLNIATALHRIAKNMEKVSMMTTHRLAFTRQREMSMLVAIAMTALPECSAQGISNIAWALSKIGGELLYLSEMDRVAEVALTKVGEFNSQNVANVAGAFASMQHSAPDLFSELAKRASDIVHTFQEQELAQVLWAFASLYEPADPLLESLDNAFKDATQFTCCLNKALSNCNENGGVKSSGDADSEGSLSSPVLSFNRDQLGNIAWSYAVLGQMDRIFFSDIWKTISRFEEQRISEQYREDIMFASQVHLVNQCLKLEHPHLQLALSSVLEEKIASagktkrfnqkvtSSFQKEVARLLVSTGLNWIREYAVDGYTVDAVLVDKKVAfeidgpthfsrntgvplgHTMLKRRYIAAAGWNVVSLSHQEWEELQGSFEQLDYLRVILKDYiggegssniaetlkmdav

MDWCVRARKVALKSIEARGLASSMEDLIkvkkkkkkgkkklekikkknkVTdddldfdleddmkmddIMGSGNGYDMNDLRRTVSMMAGGMFEEKREKTIEEFVHRLSQFSGPSNRRKEINLNKDIVDAQTAQEVLEVIAEMITAVGKGLSPSPLSPLNIATALHRIAKNMEKVSMMTTHRLAFTRQREMSMLVAIAMTALPECSAQGISNIAWALSKIGGELLYLSEMDRVAEVALTKVGEFNSQNVANVAGAFASMQHSAPDLFSELAKRASDIVHTFQEQELAQVLWAFASLYEPADPLLESLDNAFKDATQFTCCLNKALSNCNENGGVKSSGDADSEGSLSSPVLSFNRDQLGNIAWSYAVLGQMDRIFFSDIWKTISRFEEQRISEQYREDIMFASQVHLVNQCLKLEHPHLQLALSSVLEEKIASAGKTKRFNQKVTSSFQKEVARLLVSTGLNWIREYAVDGYTVDAVLVDKKVAFEIDGPTHFSRNTGVPLGHTMLKRRYIAAAGWNVVSLSHQEWEELQGSFEQLDYLRVILKDYIGGEGSSNIAETLKMDAV

***************************************************************************************************************************KDIVDAQTAQEVLEVIAEMITAV*******************RIA****KVSMMTTHRLAFTRQREMSMLVAIAMTALPECSAQGISNIAWALSKIGGELLYLSEMDRVAEVALTKVGEFNSQNVANVAGAFASMQHSAPDLFSELAKRASDIVHTFQEQELAQVLWAFASLYEPADPLLESLDNAFKDATQFTCCLNKALSNC**********************LSFNRDQLGNIAWSYAVLGQMDRIFFSDIWKTISRFEEQRISEQYREDIMFASQVHLVNQCLKLEHPHLQLALSSVLEEKIASAG***RFNQKVTSSFQKEVARLLVSTGLNWIREYAVDGYTVDAVLVDKKVAFEIDGPTHFSRNTGVPLGHTMLKRRYIAAAGWNVVSLSHQEWEELQGSFEQLDYLRVILKDYIGG***************

****************************************************************MDDIMGSGNGYDMNDLRRTVSM*************IEEFVHRLSQFSG**NRRKEINLNKDIVDAQTAQEVLEVIAEMITAVGKGLSPSPLSPLNIATALHRIAKNMEKVSMMTTHRLAFTRQREMSMLVAIAMTALPECSAQGISNIAWALSKIGGELLYLSEMDRVAEVALTKVGEFNSQNVANVAGAFASMQHSAPDLFSELAKRASDIVHTFQEQELAQVLWAFASLYEPADPLLESLDNAFKDATQFTCCLNKALSNCNENGGVKSSGDADSEGSLSSPVLSFNRDQLGNIAWSYAVLGQMDRIFFSDIWKTISRFEEQRISEQYREDIMFASQVHLVNQCLKLEHPHLQLALSSVLEEKIASAGKTKRFNQKVTSSFQKEVARLLVSTGLNWIREYAVDGYTVDAVLVDKKVAFEIDGPTHFSRNTGVPLGHTMLKRRYIAAAGWNVVSLSHQEWEELQGSFEQLDYLRVILKD************TLKMD**

MDWCVRARKVALKSIEARGLASSMEDLIKV*************IKKKNKVTDDDLDFDLEDDMKMDDIMGSGNGYDMNDLRRTVSMMAGGMFEEKREKTIEEFVHRLSQFSGPSNRRKEINLNKDIVDAQTAQEVLEVIAEMITAVGKGLSPSPLSPLNIATALHRIAKNMEKVSMMTTHRLAFTRQREMSMLVAIAMTALPECSAQGISNIAWALSKIGGELLYLSEMDRVAEVALTKVGEFNSQNVANVAGAFASMQHSAPDLFSELAKRASDIVHTFQEQELAQVLWAFASLYEPADPLLESLDNAFKDATQFTCCLNKALSNCNENG***************SPVLSFNRDQLGNIAWSYAVLGQMDRIFFSDIWKTISRFEEQRISEQYREDIMFASQVHLVNQCLKLEHPHLQLALSSVLEEKIASAGKTKRFNQKVTSSFQKEVARLLVSTGLNWIREYAVDGYTVDAVLVDKKVAFEIDGPTHFSRNTGVPLGHTMLKRRYIAAAGWNVVSLSHQEWEELQGSFEQLDYLRVILKDYIGGEGSSNIAETLKMDAV

*DWCVRARKVALKSIEARGLASSMEDLIKVKKKKKKGKKKLEKIKKK***********************SGNGYDMNDLRRTVSMMAGGMFEEKREKTIEEFVHRLSQFSGPSNRRKEINLNKDIVDAQTAQEVLEVIAEMITAVGKGLSPSPLSPLNIATALHRIAKNMEKVSMMTTHRLAFTRQREMSMLVAIAMTALPECSAQGISNIAWALSKIGGELLYLSEMDRVAEVALTKVGEFNSQNVANVAGAFASMQHSAPDLFSELAKRASDIVHTFQEQELAQVLWAFASLYEPADPLLESLDNAFKDATQFTCCLNKALSNCNENGGVKSSGDADSEGSLSSPVLSFNRDQLGNIAWSYAVLGQMDRIFFSDIWKTISRFEEQRISEQYREDIMFASQVHLVNQCLKLEHPHLQLALSSVLEEKIASAGKTKRFNQKVTSSFQKEVARLLVSTGLNWIREYAVDGYTVDAVLVDKKVAFEIDGPTHFSRNTGVPLGHTMLKRRYIAAAGWNVVSLSHQEWEELQGSFEQLDYLRVILKDYIGGEGSS*****LK****

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MDWCVRARKVALKSIEARGLASSMEDxxxxxxxxxxxxxxxxxxxxxNKVTDDDLDFDLEDDMKMDDIMGSGNGYDMNDLRRTVSMMAGGMFEEKREKTIEEFVHRLSQFSGPSNRRKEINLNKDIVDAQTAQEVLEVIAEMITAVGKGLSPSPLSPLNIATALHRIAKNMEKVSMMTTHRLAFTRQREMSMLVAIAMTALPECSAQGISNIAWALSKIGGELLYLSEMDRVAEVALTKVGEFNSQNVANVAGAFASMQHSAPDLFSELAKRASDIVHTFQEQELAQVLWAFASLYEPADPLLESLDNAFKDATQFTCCLNKALSNCNENGGVKSSGDADSEGSLSSPVLSFNRDQLGNIAWSYAVLGQMDRIFFSDIWKTISRFEEQRISEQYREDIMFASQVHLVNQCLKLEHPHLQLALSSVLEEKIASAGKTKRFNQKVTSSFQKEVARLLVSTGLNWIREYAVDGYTVDAVLVDKKVAFEIDGPTHFSRNTGVPLGHTMLKRRYIAAAGWNVVSLSHQEWEELQGSFEQLDYLRVILKDYIGGEGSSNIAETLKMDAV

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		563	2.2.26 [Sep-21-2011]
Q6DJ55		633	Protein TBRG4 OS=Xenopus	no	no	0.476	0.423	0.234	7e-05
Q58CX2		660	FAST kinase domain-contai	yes	no	0.126	0.107	0.351	0.0001
Q8BSN9		661	FAST kinase domain-contai	yes	no	0.126	0.107	0.337	0.0001

>sp\|Q6DJ55\|TBRG4_XENTR Protein TBRG4 OS=Xenopus tropicalis GN=tbrg4 PE=2 SV=2	Back alignment and function desciption

 Score = 49.3 bits (116), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 82/350 (23%), Positives = 141/350 (40%), Gaps = 82/350 (23%)

Query: 229 MDRVAEVALTKVGEFNSQNVANVAGAFASMQHSAPDLFSELAKRASDIVHTFQEQELAQV 288
             ++A   L KV E ++ ++A    +FA ++ S   LF   A+ + D    F   +L  +
Sbjct: 314 FQKMASDLLPKVPEMSANDIARCVKSFAYLKWSNLPLFEAFAQASIDQSEKFTVPQLCNL 373

Query: 289 LWAFASL-YEPADPLLESLDNAFKDATQFTCCLNKALSNCNENGGVKSSGDADSEGSLSS 347
           + AF  L ++P+               +F   +++ L                +E  L  
Sbjct: 374 VLAFGRLNFQPSK------------REEFYSMMHQKL---------------HAELDLLD 406

Query: 348 PVLSFNRDQLGNIAWSYAVLGQMDRIFFSDIWKT--ISRF--EEQRISEQYREDIMFASQ 403
           P L      L +I WS  VL Q+D  + S + +    SRF  +    S  YR  +     
Sbjct: 407 PYL------LVDIVWSLCVLRQVDSSYISKVLEPGLYSRFFTDSSPRSANYRLKLAH--- 457

Query: 404 VHLVNQCLKLEHPHLQLALSSVLEEKIASAGKTKRFNQKVTS--SFQKEVARLLVST--- 458
              +N    LEHP  +     +  E I++       N+K++   S  +EV R L      
Sbjct: 458 ---INATALLEHP--EYTGPHLPNESISTTHAVTA-NRKLSPLQSGLQEVLRELFPVEGT 511

Query: 459 ---GLNWIREYAVDGYTV------DAVLVD-------------------KKVAF-EIDGP 489
              G+N +  + +DG  V         L+D                   ++ AF   D P
Sbjct: 512 CRCGVNTVYGWYIDGEVVLDSDNKPLSLMDLEAPHLPHSQGKKPLPEGTRRFAFVAWDFP 571

Query: 490 THFSRNTGVPLGHTMLKRRYIAAAGWNVVSLSHQEWEELQGSFEQLDYLR 539
              SR+  + LG  +L RR++ AAG+ VV + + EW +L+  +++  YL+
Sbjct: 572 NFNSRSKDL-LGRFVLTRRHLQAAGFLVVEVPYYEWLDLKSEWQKSAYLK 620

May play a role in cell cycle progression.
Xenopus tropicalis (taxid: 8364)

>sp\|Q58CX2\|FAKD3_BOVIN FAST kinase domain-containing protein 3 OS=Bos taurus GN=FASTKD3 PE=2 SV=2	Back alignment and function description

>sp\|Q8BSN9\|FAKD3_MOUSE FAST kinase domain-containing protein 3 OS=Mus musculus GN=Fastkd3 PE=2 SV=2	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		563
225434251		656	PREDICTED: uncharacterized protein LOC10	0.978	0.839	0.763	0.0
224117838		663	predicted protein [Populus trichocarpa]	0.969	0.823	0.759	0.0
147853193		676	hypothetical protein VITISV_042206 [Viti	0.978	0.815	0.736	0.0
255585295		666	conserved hypothetical protein [Ricinus	0.964	0.815	0.763	0.0
356506291		664	PREDICTED: uncharacterized protein LOC10	0.953	0.808	0.724	0.0
356522646		669	PREDICTED: uncharacterized protein LOC10	0.959	0.807	0.729	0.0
449505631		633	PREDICTED: uncharacterized protein LOC10	0.969	0.862	0.696	0.0
449442355		671	PREDICTED: uncharacterized protein LOC10	0.969	0.813	0.696	0.0
296084379		439	unnamed protein product [Vitis vinifera]	0.776	0.995	0.787	0.0
4887747		627	hypothetical protein [Arabidopsis thalia	0.946	0.850	0.703	0.0

>gi\|225434251\|ref\|XP_002276208.1\| PREDICTED: uncharacterized protein LOC100257808 [Vitis vinifera]	Back alignment and taxonomy information

 Score =  840 bits (2170), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 425/557 (76%), Positives = 477/557 (85%), Gaps = 6/557 (1%)

Query: 1   MDWCVRARKVALKSIEARGLASSMEDLIKVKKKKKKGKKKLEKIKKKNKVTDDDLDFDLE 60
           MDWCV+ARK+ALKSIEARGL  +MEDLI VKKKK   KK  +K K   K    + + D +
Sbjct: 103 MDWCVKARKMALKSIEARGLTRTMEDLITVKKKKNNKKKLGKKDKISKKSKVSEEEDDSD 162

Query: 61  DDMKMDDIMGSGNGYDMND-LRRTVSMMAGGMFEEKREKTIEEFVHRLSQFSGPSNRRKE 119
           +D+++  +    N  D  D LR+TVSM+AGGMFEEK+EKT++ FV RLSQFSGPS+RRKE
Sbjct: 163 EDIELKGV----NPLDGADRLRKTVSMVAGGMFEEKKEKTMQAFVQRLSQFSGPSDRRKE 218

Query: 120 INLNKDIVDAQTAQEVLEVIAEMITAVGKGLSPSPLSPLNIATALHRIAKNMEKVSMMTT 179
           INLNK IV+AQTA+EVLEV AE I AVGKGLSPSPLSPLNIATALHRIAKNMEKVSMMT+
Sbjct: 219 INLNKAIVEAQTAEEVLEVAAETIMAVGKGLSPSPLSPLNIATALHRIAKNMEKVSMMTS 278

Query: 180 HRLAFTRQREMSMLVAIAMTALPECSAQGISNIAWALSKIGGELLYLSEMDRVAEVALTK 239
            RLAF RQ+EMSMLV IAMTALPECSAQGISNI+WALSKIGGELLYLSEMDRVAEVALTK
Sbjct: 279 RRLAFARQKEMSMLVGIAMTALPECSAQGISNISWALSKIGGELLYLSEMDRVAEVALTK 338

Query: 240 VGEFNSQNVANVAGAFASMQHSAPDLFSELAKRASDIVHTFQEQELAQVLWAFASLYEPA 299
           V +FNSQNVANVAGAFASM+HSAPDLFSEL++RAS+IVH FQEQELAQVLWAFASL EPA
Sbjct: 339 VEQFNSQNVANVAGAFASMRHSAPDLFSELSERASNIVHNFQEQELAQVLWAFASLNEPA 398

Query: 300 DPLLESLDNAFKDATQFTCCLNKALSNCNENGGVKSSGDADSEGSLSSPVLSFNRDQLGN 359
            PLLESLDN F D  QF CCL++     NE   V+++GD   E    SP L+F RDQLGN
Sbjct: 399 GPLLESLDNVFNDENQFKCCLDQETLKYNEESVVENNGDLAMEEISGSPALNFKRDQLGN 458

Query: 360 IAWSYAVLGQMDRIFFSDIWKTISRFEEQRISEQYREDIMFASQVHLVNQCLKLEHPHLQ 419
           IAWSYAVLGQMDR+FFS +WKT+S FEEQRISEQYREDIMFASQVHLVNQCLKLE+PHL+
Sbjct: 459 IAWSYAVLGQMDRVFFSHVWKTLSHFEEQRISEQYREDIMFASQVHLVNQCLKLEYPHLR 518

Query: 420 LALSSVLEEKIASAGKTKRFNQKVTSSFQKEVARLLVSTGLNWIREYAVDGYTVDAVLVD 479
           L+L S LEEK+A AGKTKRFNQK+TSSFQKEVA LLVSTGL+W+REY VDGYT+DAVLVD
Sbjct: 519 LSLRSDLEEKVARAGKTKRFNQKMTSSFQKEVAHLLVSTGLDWVREYVVDGYTLDAVLVD 578

Query: 480 KKVAFEIDGPTHFSRNTGVPLGHTMLKRRYIAAAGWNVVSLSHQEWEELQGSFEQLDYLR 539
           +KVA EIDGPTHFSRN+GVPLGHTMLKRRYI AAGW + S+SHQEWEELQG FEQLDYLR
Sbjct: 579 QKVALEIDGPTHFSRNSGVPLGHTMLKRRYITAAGWKLASVSHQEWEELQGGFEQLDYLR 638

Query: 540 VILKDYIGGEGSSNIAE 556
            ILKD+I GEGS+NI +
Sbjct: 639 EILKDHI-GEGSANIVQ 654

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|224117838\|ref\|XP_002331644.1\| predicted protein [Populus trichocarpa] gi\|222874040\|gb\|EEF11171.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|147853193\|emb\|CAN78554.1\| hypothetical protein VITISV_042206 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|255585295\|ref\|XP_002533346.1\| conserved hypothetical protein [Ricinus communis] gi\|223526811\|gb\|EEF29031.1\| conserved hypothetical protein [Ricinus communis]	Back alignment and taxonomy information

>gi\|356506291\|ref\|XP_003521919.1\| PREDICTED: uncharacterized protein LOC100805208 [Glycine max]	Back alignment and taxonomy information

>gi\|356522646\|ref\|XP_003529957.1\| PREDICTED: uncharacterized protein LOC100794144 [Glycine max]	Back alignment and taxonomy information

>gi\|449505631\|ref\|XP_004162527.1\| PREDICTED: uncharacterized protein LOC101223645 [Cucumis sativus]	Back alignment and taxonomy information

>gi\|449442355\|ref\|XP_004138947.1\| PREDICTED: uncharacterized protein LOC101211080 [Cucumis sativus]	Back alignment and taxonomy information

>gi\|296084379\|emb\|CBI24767.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|4887747\|gb\|AAD32283.1\| hypothetical protein [Arabidopsis thaliana]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		563
TAIR\|locus:2045213		671	RAP "AT2G31890" [Arabidopsis t	0.818	0.687	0.755	6.9e-195
GENEDB_PFALCIPARUM\|PF10_0240		433	PF10_0240 "hypothetical protei	0.291	0.378	0.271	8.5e-08
UNIPROTKB\|Q8IJF8		433	PF10_0240 "Conserved Plasmodiu	0.291	0.378	0.271	8.5e-08
GENEDB_PFALCIPARUM\|PFE0905w		1379	PFE0905w "hypothetical protein	0.440	0.179	0.197	1.1e-07
UNIPROTKB\|Q8I3S7		1379	PFE0905w "RAP protein, putativ	0.440	0.179	0.197	1.1e-07
UNIPROTKB\|H9GW76		631	TBRG4 "Uncharacterized protein	0.122	0.109	0.323	3.7e-05

TAIR\|locus:2045213 RAP "AT2G31890" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1796 (637.3 bits), Expect = 6.9e-195, Sum P(2) = 6.9e-195
 Identities = 352/466 (75%), Positives = 403/466 (86%)

Query:    77 MNDLRRTVSMMAGGMFEEKREKTIEEFVHRLSQFSGPSNRRKEINLNKDIVDAQTAQEVL 136
             M DLR+ VS +AGGMFEEK+EK  E+   RLSQFSGPS+R KEINLNK I++AQTA+EVL
Sbjct:   207 MGDLRKRVSSLAGGMFEEKKEKMKEQLAQRLSQFSGPSDRMKEINLNKAIIEAQTAEEVL 266

Query:   137 EVIAEMITAVGKGLSPSPLSPLNIATALHRIAKNMEKVSMMTTHRLAFTRQREMSMLVAI 196
             EV AE I AV KGLSPSPLSPLNIATALHRIAKNMEKVSMM T RLAF RQREMSMLVA+
Sbjct:   267 EVTAETIMAVAKGLSPSPLSPLNIATALHRIAKNMEKVSMMRTRRLAFARQREMSMLVAL 326

Query:   197 AMTALPECSAQGISNIAWALSKIGGELLYLSEMDRVAEVALTKVGEFNSQNVANVAGAFA 256
             AMT LPECSAQGISNI+WALSKIGGELLYL+EMDRVAEVA +KVGEFNSQNVAN+AGAFA
Sbjct:   327 AMTCLPECSAQGISNISWALSKIGGELLYLTEMDRVAEVATSKVGEFNSQNVANIAGAFA 386

Query:   257 SMQHSAPDLFSELAKRASDIVHTFQEQELAQVLWAFASLYEPADPLLESLDNAFKDATQF 316
             SM+HSAP+LF+EL+KRAS I++TF+ QE+AQ+LW+FASLYEPADPLLESLD+AFK + QF
Sbjct:   387 SMRHSAPELFAELSKRASTIINTFKGQEIAQLLWSFASLYEPADPLLESLDSAFKSSDQF 446

Query:   317 TCCLNKALSNCNENGGVKSSGDADSEGSLSSPVLSFNRDQLGNIAWSYAVLGQMDRIFFS 376
              C L K ++N +E    + S D        SP LSFNRDQLGNIAWSYAVLGQ++R FF+
Sbjct:   447 KCYLTKEITNSDEVVDAEVSDDVSR-----SPALSFNRDQLGNIAWSYAVLGQVERPFFA 501

Query:   377 DIWKTISRFEEQRISEQYREDIMFASQVHLVNQCLKLEHPHLQLALSSVLEEKIASAGKT 436
             +IW T++  EEQR+SEQYRED+MFASQV+LVNQCLKLE PHLQL+L   LEEKI+ AGKT
Sbjct:   502 NIWNTLTTLEEQRLSEQYREDVMFASQVYLVNQCLKLECPHLQLSLCQELEEKISRAGKT 561

Query:   437 KRFNQKVTSSFQKEVARLLVSTGLNWIREYAVDGYTVDAVLVDKKVAFEIDGPTHFSRNT 496
             KRFNQK+TSSFQKEV RLL+STGL+W +E+ VDGYTVD  LV+KKVA EIDGPTHFSRN+
Sbjct:   562 KRFNQKITSSFQKEVGRLLISTGLDWAKEHDVDGYTVDVALVEKKVALEIDGPTHFSRNS 621

Query:   497 GVPLGHTMLKRRYIAAAGWNVVSLSHQEWEELQGSFEQLDYLRVIL 542
             G+PLGHTMLKRRY+AAAGW VVSLS QEWEE +GS EQL+YLR IL
Sbjct:   622 GLPLGHTMLKRRYVAAAGWKVVSLSLQEWEEHEGSHEQLEYLREIL 667

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GENEDB_PFALCIPARUM\|PF10_0240 PF10_0240 "hypothetical protein" [Plasmodium falciparum (taxid:5833)]	Back alignment and assigned GO terms

UNIPROTKB\|Q8IJF8 PF10_0240 "Conserved Plasmodium protein" [Plasmodium falciparum 3D7 (taxid:36329)]	Back alignment and assigned GO terms

GENEDB_PFALCIPARUM\|PFE0905w PFE0905w "hypothetical protein, conserved" [Plasmodium falciparum (taxid:5833)]	Back alignment and assigned GO terms

UNIPROTKB\|Q8I3S7 PFE0905w "RAP protein, putative" [Plasmodium falciparum 3D7 (taxid:36329)]	Back alignment and assigned GO terms

UNIPROTKB\|H9GW76 TBRG4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		563
pfam08373		57	pfam08373, RAP, RAP domain	2e-16
smart00952		58	smart00952, RAP, This domain is found in various e	9e-14

>gnl\|CDD\|219811 pfam08373, RAP, RAP domain	Back alignment and domain information

 Score = 73.0 bits (180), Expect = 2e-16
 Identities = 21/56 (37%), Positives = 36/56 (64%), Gaps = 1/56 (1%)

Query: 484 FEIDGPTHFSRNTGVPLGHTMLKRRYIAAAGWNVVSLSHQEWEELQGSFEQLDYLR 539
            E+DGP+HF RN+    G T LK R ++A G+ V+ + + EW +L    ++++YL+
Sbjct: 1   IEVDGPSHFYRNSKNLTGKTKLKHRILSALGYKVIHIPYYEWNQL-TDEQKVEYLK 55

This domain is found in various eukaryotic species, where it is found in proteins that are important in various parasite-host cell interactions. It is thought to be an RNA-binding domain. The domain is involved in plant defence in response to bacterial infection. Length = 57

>gnl\|CDD\|214932 smart00952, RAP, This domain is found in various eukaryotic species, particularly in apicomplexans	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		563
PTZ00479		435	RAP Superfamily; Provisional	100.0
PF08373		58	RAP: RAP domain; InterPro: IPR013584 The ~60-resid	99.78
PRK09169		2316	hypothetical protein; Validated	99.71
PRK09169		2316	hypothetical protein; Validated	99.7
PTZ00479		435	RAP Superfamily; Provisional	99.46
PRK14707		2710	hypothetical protein; Provisional	98.78
PRK14707		2710	hypothetical protein; Provisional	98.78
PF04480		108	DUF559: Protein of unknown function (DUF559); Inte	98.78
cd01038		108	Endonuclease_DUF559 Domain of unknown function, ap	98.72
PRK09767		117	hypothetical protein; Provisional	98.54
cd00221		115	Vsr Very Short Patch Repair (Vsr) Endonuclease. En	98.44
COG2852		129	Very-short-patch-repair endonuclease [Replication,	98.24
PF06743		71	FAST_1: FAST kinase-like protein, subdomain 1; Int	98.13
TIGR00632		117	vsr DNA mismatch endonuclease Vsr. All proteins in	98.11
PF06743		71	FAST_1: FAST kinase-like protein, subdomain 1; Int	97.96
PF08368		93	FAST_2: FAST kinase-like protein, subdomain 2; Int	97.21
cd01037		80	Restriction_endonuclease_like Superfamily of nucle	96.67
PF10881		126	DUF2726: Protein of unknown function (DUF2726); In	94.48
COG3727		150	Vsr DNA G:T-mismatch repair endonuclease [DNA repl	93.34
PF07671		37	DUF1601: Protein of unknown function (DUF1601); In	92.25
KOG0166		514	consensus Karyopherin (importin) alpha [Intracellu	90.4
PF07671		37	DUF1601: Protein of unknown function (DUF1601); In	90.17
PF03852		75	Vsr: DNA mismatch endonuclease Vsr; InterPro: IPR0	89.08

>PTZ00479 RAP Superfamily; Provisional	Back alignment and domain information

Probab=100.00  E-value=9.9e-42  Score=350.80  Aligned_cols=338  Identities=16%  Similarity=0.194  Sum_probs=267.4

Q ss_pred             CCCCChhhHHHHHHHHHhcccccchhhhhhhhhccchhHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCCcCCHHHHHH
Q 008492          152 PSPLSPLNIATALHRIAKNMEKVSMMTTHRLAFTRQREMSMLVAIAMTALPECSAQGISNIAWALSKIGGELLYLSEMDR  231 (563)
Q Consensus       152 ~~~fn~vn~atAL~RLak~~~~~s~~~~~r~~~ar~~~~~~L~~~~~~~l~~~~~q~LsNilWAlakLg~~~~~~~~l~~  231 (563)
                      |.-+++.-+|.+...-|.+-..            ..+.+.....++.+.++.++||+|++|+|+|||+++-..  ..+++
T Consensus        55 ~~~md~~~is~~vqkaat~rkh------------D~~Lw~~f~~Rilel~dtL~Pqqig~Ilyg~gKsr~~~~--efy~~  120 (435)
T PTZ00479         55 PDLMDGWYLSACVQKAATLRKH------------DLELWHGFTNRLLELSDTLTPQQIGYIFYGYGKSRFLNP--EFYEK  120 (435)
T ss_pred             hhhcCHHHHHHHHHHHHhhhhc------------hHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhccCH--HHHHH
Confidence            4566777777666666654211            123456677788899999999999999999999998642  45789


Q ss_pred             HHHHHHHhhCCCChHHHHHHHHHHHHCCCCCHHHHHHHHHHHhhhhcCCCHHHHHHHHHHHHHcCCCChhHHHHHHHHhh
Q 008492          232 VAEVALTKVGEFNSQNVANVAGAFASMQHSAPDLFSELAKRASDIVHTFQEQELAQVLWAFASLYEPADPLLESLDNAFK  311 (563)
Q Consensus       232 la~~a~~~~~~f~~q~LanilwAlA~L~~~~~~L~~ala~~v~~~l~~f~~qeLanilwAfA~l~~~~~~L~~al~~~~~  311 (563)
                      +.+.+...+++|++++|++++|||++|+++++.++++++.++..+..+|+++++++++.|+|+||+.+..+.+.+.+.+.
T Consensus       121 ~~~~v~~~L~~fssh~L~~i~wALsrL~Ird~~fL~~~ak~vl~r~~~~r~~dl~k~~nslakLg~~~~~l~k~l~~~~~  200 (435)
T PTZ00479        121 MLKFVQPLLPNFYSHSLMCIAWALNRVQIRDEAFLSRFAKEVGEKFDDIRTTDLIKICNSLAKLGGYTNNLKKFLSEKMV  200 (435)
T ss_pred             HHHHHHHHhhhcCccHHHHHHHHHHhcCCCcHHHHHHHHHHHHhhccccCchhHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999888777665332


Q ss_pred             hcchhhhhHHHHhhhhhccCCCCCCCCcccchhccCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhhHHHHhh
Q 008492          312 DATQFTCCLNKALSNCNENGGVKSSGDADSEGSLSSPVLSFNRDQLGNIAWSYAVLGQMDRIFFSDIWKTISRFEEQRIS  391 (563)
Q Consensus       312 ~~~~f~~~l~~~vs~~~~a~~~~~~~~L~~~~~~~~~l~~f~~qeLanilWSLA~Lg~~d~~lf~~l~~~L~~~~~~~ls  391 (563)
                                                         ..++.|+++++-|.+-..+.++.++.+.--.++.....   -.+ 
T Consensus       201 -----------------------------------~rle~~~~~~~r~~i~~it~~~Lf~d~m~~~~ler~s~---~~~-  241 (435)
T PTZ00479        201 -----------------------------------EKLESLFAQDFRNVVNDVTLIHLYDDNTQIYILERFSK---MFI-  241 (435)
T ss_pred             -----------------------------------HHHhhhcccchhhhcChhhHHHHhhhHHHHHHHHHccc---cce-
Confidence                                               23456777777777777777777777643333322100   000 


Q ss_pred             HhhHHhhHHHHHHHHHHHHhhhhCCCcccccchHHHHHHHHhcccccc-CCCCCCHHHHHHHHHHHhcCCcceeeccccc
Q 008492          392 EQYREDIMFASQVHLVNQCLKLEHPHLQLALSSVLEEKIASAGKTKRF-NQKVTSSFQKEVARLLVSTGLNWIREYAVDG  470 (563)
Q Consensus       392 e~~~~~l~~~~QL~~~n~~l~lE~p~~~~~l~~~l~~~l~~a~~~~~~-~~~~~S~lq~~V~~~L~~lG~~~~~E~~~~G  470 (563)
                      -.|..   .+.|+|....++.+.+|+....++.+...++.+......- ....+|.+|++|+++|..||+.|+.|+..||
T Consensus       242 c~r~~---hl~~~y~~aly~rl~~p~v~~~Ls~~~r~Fl~r~s~r~i~~~~~~~S~~h~dVS~~L~~mGI~H~ne~~~Gp  318 (435)
T PTZ00479        242 CARPQ---HLQQAYKSAVAVRVLLPHVWFQLSKSVKSFYTRLSMRRIPQSLRKPSPFQWDVSNCLAKLGISHRNTFYWGC  318 (435)
T ss_pred             ecccH---HHHHHHhhhhhheeechHHHHhcCHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHHhCCchhhheeecC
Confidence            01111   1223443334567788988778888888888776432111 1367999999999999999999999999999


Q ss_pred             eeeeEeeC-CCceEEEEcCCCCcccCCCCCccchHHHHHHHHHCCCEEEEEehhhHHhhcCh-HHHHHHHHHHHHHH
Q 008492          471 YTVDAVLV-DKKVAFEIDGPTHFSRNTGVPLGHTMLKRRYIAAAGWNVVSLSHQEWEELQGS-FEQLDYLRVILKDY  545 (563)
Q Consensus       471 ~~vDi~~~-~~rVAIEvdGp~Hf~~ns~~~lG~t~lK~RlL~~~Gy~Vv~Vpy~EW~~l~~~-~ek~~YLr~~L~~~  545 (563)
                      |.|||+.+ +++++||||||+||++|+...+|.+.+|+|+|..+||+|++|||+||.++.++ ++|++||++.++.-
T Consensus       319 f~iDI~~~~~k~~~IeVdGPshFY~ns~~~Ta~skLkHriL~~lGw~V~~Ipy~eW~~L~~d~e~K~eYLrk~~e~~  395 (435)
T PTZ00479        319 FWIDIGEIDDKRNCWFIDGPSCFYTSTNEYTESVKLQHRILSNLGWNIRRVVWIDWVQLGDDTEAKVQYVRKLRESE  395 (435)
T ss_pred             eEEEEeccCCcceEEEEcCcchhhccchhhHHHHHHHHHHHHHCCCeEEEeeHHHHhhhCcCHHHHHHHHHHHhhcC
Confidence            99999965 68899999999999999999999999999999999999999999999999876 57999999998764

>PF08373 RAP: RAP domain; InterPro: IPR013584 The ~60-residue RAP (an acronym for RNA-binding domain abundant in Apicomplexans) domain is found in various proteins in eukaryotes	Back alignment and domain information

>PRK09169 hypothetical protein; Validated	Back alignment and domain information

>PRK09169 hypothetical protein; Validated	Back alignment and domain information

>PTZ00479 RAP Superfamily; Provisional	Back alignment and domain information

>PRK14707 hypothetical protein; Provisional	Back alignment and domain information

>PRK14707 hypothetical protein; Provisional	Back alignment and domain information

>PF04480 DUF559: Protein of unknown function (DUF559); InterPro: IPR007569 This entry represents a protein of unknown function, but is thought to be a DNA mismatch repair endonuclease	Back alignment and domain information

>cd01038 Endonuclease_DUF559 Domain of unknown function, appears to be related to a diverse group of endonucleases	Back alignment and domain information

>PRK09767 hypothetical protein; Provisional	Back alignment and domain information

>cd00221 Vsr Very Short Patch Repair (Vsr) Endonuclease	Back alignment and domain information

>COG2852 Very-short-patch-repair endonuclease [Replication, recombination, and repair]	Back alignment and domain information

>PF06743 FAST_1: FAST kinase-like protein, subdomain 1; InterPro: IPR010622 This entry represents a conserved region of eukaryotic Fas-activated serine/threonine (FAST) kinases that contains several conserved leucine residues	Back alignment and domain information

>TIGR00632 vsr DNA mismatch endonuclease Vsr	Back alignment and domain information

>PF06743 FAST_1: FAST kinase-like protein, subdomain 1; InterPro: IPR010622 This entry represents a conserved region of eukaryotic Fas-activated serine/threonine (FAST) kinases that contains several conserved leucine residues	Back alignment and domain information

>PF08368 FAST_2: FAST kinase-like protein, subdomain 2; InterPro: IPR013579 This domain represents a conserved region of eukaryotic Fas-activated serine/threonine (FAST) kinases (2	Back alignment and domain information

>cd01037 Restriction_endonuclease_like Superfamily of nucleases including Short Patch Repair (Vsr) Endonucleases, archaeal Holliday junction resolvases, MutH methy-directed DNA mismatch-repair endonucleases, and catalytic domains of many restriction endonucleases, such as EcoRI, BamHI, and FokI	Back alignment and domain information

>PF10881 DUF2726: Protein of unknown function (DUF2726); InterPro: IPR024402 This domain found in bacterial proteins has no known function	Back alignment and domain information

>COG3727 Vsr DNA G:T-mismatch repair endonuclease [DNA replication, recombination, and repair]	Back alignment and domain information

>PF07671 DUF1601: Protein of unknown function (DUF1601); InterPro: IPR011632 This repeat is found in a small number of proteins and is apparently limited to Coxiella burnetii	Back alignment and domain information

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF07671 DUF1601: Protein of unknown function (DUF1601); InterPro: IPR011632 This repeat is found in a small number of proteins and is apparently limited to Coxiella burnetii	Back alignment and domain information

>PF03852 Vsr: DNA mismatch endonuclease Vsr; InterPro: IPR004603 This entry represents VSR (very short patch repair) endonucleases, which occur in a variety of bacteria	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		563
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-11
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-09

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 64.1 bits (155), Expect = 8e-11
 Identities = 56/373 (15%), Positives = 106/373 (28%), Gaps = 122/373 (32%)

Query: 265 LFSELAKRASDIVHTFQEQELAQ-VLWAFASL-YEPADPLL------ESLDNAFKDATQF 316
           LF  L  +  ++V  F E+ L     +  + +  E   P +      E  D  + D   F
Sbjct: 67  LFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF 126

Query: 317 T----------CCLNKALSNCNENGGVKSSGDADSEGS----LSSPVLSFNRDQLGNIAW 362
                        L +AL        V   G     GS    ++  V             
Sbjct: 127 AKYNVSRLQPYLKLRQALLELRPAKNVLIDGVL---GSGKTWVALDVCL----------- 172

Query: 363 SYAVLGQMD-RIFFSDIWKTISRFEEQRISEQYREDIMFASQVHLVNQCLKLEHPHLQLA 421
           SY V  +MD +IF    W  +             E ++      L     +++      +
Sbjct: 173 SYKVQCKMDFKIF----WLNLKNCNSP-------ETVL----EMLQKLLYQIDPNWTSRS 217

Query: 422 LSSV--------LEEKIASAGKTKRF-----------NQKVTSSFQKEVARLLVSTGLNW 462
             S         ++ ++    K+K +           N K  ++F     ++L++T    
Sbjct: 218 DHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLS-CKILLTTRFKQ 276

Query: 463 IREYAVDGYTVDAVLVDKKVAFEID-GPTHFSRNTGV-------------PLGHTMLKRR 508
           + ++     T    L    +    D   +   +                 P   ++    
Sbjct: 277 VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSI---- 332

Query: 509 YIAA------AGWNV--------------VSLSHQEWEELQGSFEQLDYLRVILKDYIGG 548
            IA       A W+                SL+  E  E +  F++L     +       
Sbjct: 333 -IAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRL----SVFPP---- 383

Query: 549 EGSSNI-AETLKM 560
             S++I    L +
Sbjct: 384 --SAHIPTILLSL 394

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		563
3hrl_A		104	Endonuclease-like protein; structural genomics, PS	98.89
3r3p_A		105	MobIle intron protein; homing endonuclease, hydrol	98.75
1vsr_A		136	Protein (VSR endonuclease); DNA repair, mismatch r	98.3
1cw0_A		155	Protein (DNA mismatch endonuclease); protein-DNA c	98.3
3ul1_B		510	Importin subunit alpha-2; arm repeat, armadillo re	92.96
4b8j_A		528	Importin subunit alpha-1A; transport protein, nucl	90.44
1m0d_A		138	Endonuclease, endodeoxyribonuclease I; holliday ju	87.42
3tpo_A		529	Importin subunit alpha-2; nuclear import, protein	82.83

>3hrl_A Endonuclease-like protein; structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Neisseria gonorrhoeae fa 1090}	Back alignment and structure

Probab=98.89  E-value=1.3e-08  Score=87.61  Aligned_cols=93  Identities=22%  Similarity=0.306  Sum_probs=69.0

Q ss_pred             CCHHHHHHHHHHHh---cCCcceeeccccceeeeEeeCCCceEEEEcCCCCcccCCCCCccchHHHHHHHHHCCCEEEEE
Q 008492          444 TSSFQKEVARLLVS---TGLNWIREYAVDGYTVDAVLVDKKVAFEIDGPTHFSRNTGVPLGHTMLKRRYIAAAGWNVVSL  520 (563)
Q Consensus       444 ~S~lq~~V~~~L~~---lG~~~~~E~~~~G~~vDi~~~~~rVAIEvdGp~Hf~~ns~~~lG~t~lK~RlL~~~Gy~Vv~V  520 (563)
                      .|+.-..+...|+.   .|+.+...+.+++|.+|++.++.++||||||.+|....     .....|.+.|+..||.|+++
T Consensus         4 ~T~~E~~l~~~Lr~~~~~G~~fr~q~~i~~~~~Df~~~~~rl~IE~DG~~H~~~~-----~~D~~R~~~L~~~Gw~VlR~   78 (104)
T 3hrl_A            4 MSEAEAKLWQHLRAGRLNGYKFRRQQPMGNYIVDFMCVTPKLIVEADGGQHAEQA-----VYDHARTVYLNSLGFTVLRF   78 (104)
T ss_dssp             CCHHHHHHHHHHGGGTTTTCCEEEEEEETTEEEEEEETTTTEEEEEEC------------CCCHHHHHHHHHTTCEEEEE
T ss_pred             CCHHHHHHHHHHHhCCCCCcEEEeecccCCcEEeEEecCCCEEEEEECcccCChH-----HHHHHHHHHHHhCcCEEEEE
Confidence            45666777788888   68888888888999999999999999999999887532     45999999999999999999


Q ss_pred             ehhhHHhhcChHHHHHHHHHHHH
Q 008492          521 SHQEWEELQGSFEQLDYLRVILK  543 (563)
Q Consensus       521 py~EW~~l~~~~ek~~YLr~~L~  543 (563)
                      .+.++.  .+.+.-++-++..|.
T Consensus        79 ~~~dv~--~~~~~v~~~I~~~l~   99 (104)
T 3hrl_A           79 WNHEIL--QQTNDVLAEILRVLQ   99 (104)
T ss_dssp             EHHHHH--HCHHHHHHHHHHHHH
T ss_pred             EHHHHh--hCHHHHHHHHHHHHh
Confidence            988864  232344444554443

PyMOL of 3hrl

>3r3p_A MobIle intron protein; homing endonuclease, hydrolase; 2.20A {Bacillus phage 0305phi8-36}	Back alignment and structure

>1vsr_A Protein (VSR endonuclease); DNA repair, mismatch recognition, hydrolase; 1.80A {Escherichia coli} SCOP: c.52.1.15 PDB: 1odg_A*	Back alignment and structure

>1cw0_A Protein (DNA mismatch endonuclease); protein-DNA complex, intercalation, zinc, hydrolase/DNA; HET: DNA; 2.30A {Escherichia coli} SCOP: c.52.1.15	Back alignment and structure

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...	Back alignment and structure

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A	Back alignment and structure

>1m0d_A Endonuclease, endodeoxyribonuclease I; holliday junction resolvase, homodimer, domain swapped, composite active site, hydrolase; 1.90A {Enterobacteria phage T7} SCOP: c.52.1.17 PDB: 1m0i_A 2pfj_A 1fzr_A 3cae_A	Back alignment and structure

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		563
d1vsra_		134	c.52.1.15 (A:) Very short patch repair (VSR) endon	6e-04

>d1vsra_ c.52.1.15 (A:) Very short patch repair (VSR) endonuclease {Escherichia coli [TaxId: 562]} Length = 134	Back information, alignment and structure


class: Alpha and beta proteins (a/b)
fold: Restriction endonuclease-like
superfamily: Restriction endonuclease-like
family: Very short patch repair (VSR) endonuclease
domain: Very short patch repair (VSR) endonuclease
species: Escherichia coli [TaxId: 562]

 Score = 37.9 bits (88), Expect = 6e-04
 Identities = 24/135 (17%), Positives = 43/135 (31%), Gaps = 32/135 (23%)

Query: 446 SFQKEVARLLVSTGLNWIREYAVDGYTVDAVLVDKKVAFEIDGPTH-------------- 491
           + +K +A LL   GL +  + A      D V+ + +      G                 
Sbjct: 1   AIEKRLASLLTGQGLAFRVQDASLPGRPDFVVDEYRCVIFTHGCFWHHHHCYLFKVPATR 60

Query: 492 -------FSRNTGVPLGHTMLKRRYIAAAGWNVVSLSHQEWE-ELQGSFE-QLDYLRVIL 542
                    +N              +   GW V+ +    WE  L+G  +   + L   L
Sbjct: 61  TEFWLEKIGKNV----ERDRRDISRLQELGWRVLIV----WECALRGREKLTDEALTERL 112

Query: 543 KDYI-GGEGSSNIAE 556
           +++I G   S+ I  
Sbjct: 113 EEWICGEGASAQIDT 127

PyMOL of d1vsra_

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		563
d1vsra_		134	Very short patch repair (VSR) endonuclease {Escher	98.15

>d1vsra_ c.52.1.15 (A:) Very short patch repair (VSR) endonuclease {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Restriction endonuclease-like
superfamily: Restriction endonuclease-like
family: Very short patch repair (VSR) endonuclease
domain: Very short patch repair (VSR) endonuclease
species: Escherichia coli [TaxId: 562]

Probab=98.15  E-value=3e-06  Score=73.14  Aligned_cols=97  Identities=23%  Similarity=0.245  Sum_probs=69.2

Q ss_pred             HHHHHHHHhcCCcceeeccccceeeeEeeCCCceEEEEcCCCCcccCC---CCCc--------------cchHHHHHHHH
Q 008492          449 KEVARLLVSTGLNWIREYAVDGYTVDAVLVDKKVAFEIDGPTHFSRNT---GVPL--------------GHTMLKRRYIA  511 (563)
Q Consensus       449 ~~V~~~L~~lG~~~~~E~~~~G~~vDi~~~~~rVAIEvdGp~Hf~~ns---~~~l--------------G~t~lK~RlL~  511 (563)
                      ..|.+.|..+|+.+......-++..||++|+.|+||+|||......+.   ..|-              -.+.-+.+.|+
T Consensus         4 ~~lr~~L~~~G~RyR~~~k~lpG~PDiv~~~~k~aIfvdGcFWH~h~c~~~~~Pktn~efW~~Ki~~N~~RD~~~~~~L~   83 (134)
T d1vsra_           4 KRLASLLTGQGLAFRVQDASLPGRPDFVVDEYRCVIFTHGCFWHHHHCYLFKVPATRTEFWLEKIGKNVERDRRDISRLQ   83 (134)
T ss_dssp             HHHHHHHHHTTCCCEESCTTSTTCCSEEEGGGTEEEEEECTTTTTCSSTTCCCCSSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCeEEecCCCCCCCCCEeecCccEEEEEcCccccCCCccccCCCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            357788999999988776666678899999999999999987443332   1121              25666778899


Q ss_pred             HCCCEEEEEehhhHHhhcChH-HHHHHHHHHHHHHhcc
Q 008492          512 AAGWNVVSLSHQEWEELQGSF-EQLDYLRVILKDYIGG  548 (563)
Q Consensus       512 ~~Gy~Vv~Vpy~EW~~l~~~~-ek~~YLr~~L~~~~~~  548 (563)
                      .+||+|+.|  ||= ++.+.. -..+.+.+.|...|.+
T Consensus        84 ~~GW~vl~i--WEc-elk~~~~~~~e~i~~~L~~~l~~  118 (134)
T d1vsra_          84 ELGWRVLIV--WEC-ALRGREKLTDEALTERLEEWICG  118 (134)
T ss_dssp             HTTCEEEEE--EHH-HHSSTTCCCHHHHHHHHHHHHHT
T ss_pred             HCCCEEEEE--ecC-ccCCcccccHHHHHHHHHHHHhC
Confidence            999999999  332 233222 2356777777777655

PyMOL of d1vsra_