Citrus Sinensis ID: 008496

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560---
Protein Sequence
MSSITSEELNYLVFRYLQESGLLHSAFVLGYEAGINKCNIDGNLVPPRALITFVQKGLQYLEMEANLSNSDVDMDEDFSFLQPMDLITKDVCELRQMVKEKKKNLNGDRDKENDVDRGHEIEHGRVKEKERLDREKERERDKERVENEKEPEKQHESHPDKEMLTVQEEKVNSKPEENGVLQGEKGPEPMDIATTSASESFEIPNSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLDFRM
Secondary Structure (PSIPRED)
ccccccHHHHHHHHHHHHHccccEEHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHcHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccEEEEcccccccccccccEEEEEEcccccEEEEEcccccEEEccccccccccccccEEEEEEcccccEEEEccccccEEEEEcccccccccccccccccEEEEccccccccccccEEEEEEcccccEEEEEEccccEEEEccccccccccccccccEEEEEEcccccEEEEEcccccEEEEEccccEEEEEcccccccEEEEEEccccEEEEEEccccEEEEEccccEEEEccccccccEEEEEEcccccEEEEccccccEEEEEccccEEEEEcccccccEEEEEEccccccccccccccEEEEccccccEEEEEccccEEEEEcccccccEEEEEEcccccEEEEEEccccEEEEEcccccEEEEEEccccEEEEEEcccccEEEEEEccccEEEEEEcc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHHHHHHHHccccEEHHEEcccccccccccccccccHHHHHHHHHHcccEEEEEEEcccccccccccHHHccHHHHHcccHHHHHHHHHHcccccEEcccccccHHcccccccccEEEEEcccccccEEEEEEcccccEEEEccccccEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEccccccEEEcHHHHHHcccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEccccccEEEHcHHHcccccccccEEEEEEcccccEEEEEccccEEEEEEccccEEEEEccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEccccccEEEEEEccccEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEccccccccccccccEEEEEccccEEEEEEcccccEEEEEccccccEEEEEEcccccEEEEcccccEEEEEEcccccEEEEEcccccEEEEEEcccccEEEEEccccEEEEEEEcc
Coil and Loop (DISEMBL)
MSSITSEELNYLVFRYLQESGLLHSAFVLGYEaginkcnidgnlvpprALITFVQKGLQYLEMEAnlsnsdvdmdedfsflqpmdliTKDVCELRQMVKEKKKnlngdrdkendvdrgheiehgrvkeKERLDREKERERDKERvenekepekqheshpdkemLTVQEEkvnskpeengvlqgekgpepmdiattsasesfeipnsdvtileghtsevcacawspagsllasgsgdstaRIWTiadgtsnggaqngplNVLVLKHVkgrtnekskdvttldwngegtllatgsydgqariwstngdlkctlskhkgpifslkwnkkgdylltgscdktaIVWDVKTEEWKQqfefhsgptldvdwrnnvsfatsstdnmiyvckigenrpiktfaghqgevncvkwdptgsllascsDDVTAKIWNMKQDKYVHDLREHSkeiytirwsptgsgtnnpnqqLILASASFDSTVKLWDVELGKLLYslnghrepvyslafsptgeylasgsldksmhiwslkegkivktytgnggifeVCWNKEGDKIAACFANHTVCVLDFRM
Flexible Loop (DISEMBL)
MSSITSEELNYLVFRYLQESGLLHSAFVLGYEAGINKCNIDGNLVPPRALITFVQKGLQYLEMEANLSNSDVDMDEDFSFLQPMDLITKDVCELRQMVKekkknlngdrdkendvdrgheiehgrvkekerldrekererdkervenekepekqheshpdkemltVQEEkvnskpeengvlqgekgpEPMDIATTSASESFEIPNSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGtsnggaqngpLNVLVLKHVKgrtnekskdvttldwngeGTLLatgsydgqaRIWSTNGDLKCTLSKHKGpifslkwnkkgdylLTGSCDKTAIVWDVKTEEWKQQFEfhsgptldvdwrNNVSFatsstdnmiyVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIytirwsptgsgtNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLDFRM
Low Complexity Region (SEG)
MSSITSEELNYLVFRYLQESGLLHSAFVLGYEAGINKCNIDGNLVPPRALITFVQKGLQYLEMEANLSNSDVDMDEDFSFLQPMDLITKDVCELRQMVKEKKKNLNGDRDKENDVDRGHEIEHGrvkekerldrekererdkervenekePEKQHESHPDKEMLTVQEEKVNSKPEENGVLQGEKGPEPMDIATTSASESFEIPNSDVTILEGHTSEVCACAWSPagsllasgsgDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLDFRM
Disordered region (IsUnstruct)
********LNYLVFRYLQESGLLHSAFVLGYEAGINKCNIDGNLVPPRALITFVQKGLQYLEMEANLSNSDVDMDEDFSFLQPMDLITKDVCELR***************************************************************************************************************DVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRT****KDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPT********QQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLDF**
Disordered Region (DISOPRED)
**SITSEELNYLVFRYLQESGLLHSAFVLGYEAGINKCNIDGNLVPPRALITFVQKGLQYLEMEANLSNSDVDMDEDFSFLQPMDLITKDVCELRQMVKEKKKNLNGDRDKENDVDRGHEIEHGRVKEKERLDREKERERDKERVENEKEPEKQHESHPDKEMLTVQEEKVNSKPEENGVLQGEKGPEPMDIATTSASESFEIPNSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLDFRM
Disordered Region (DISEMBL)
MSSITSEELNYLVFRYLQESGLLHSAFVLGYEAGINKCNIDGNLVPPRALITFVQKGLQYLEMEANLSNSDVDMDEDFSFLQPMDLITKDVCELRQMVKEKKKNLNGDRDKENDVDRGHEIEHGRVKE****************************************************LQGEKGPEPMDIATTSASESFEIPNSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLDFRM
Disordered Region (DISPRO)
***ITSEELNYLVFRYLQESGLLHSAFVLGYEAGINKCNIDGNLVPPRALITFVQKGLQYLEMEANLSNSDVDMDEDFSFLQPMDLITKDVCELRQMVKEKKKNLNGDRDKENDVDRGHEIEHGRVKEKERLDREKERERDKERVENEKEPEKQHESHPDKEMLTVQEEKVNSKPEENGVLQGEKGPEPMDIATTSASESFEIPNSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLDFRM
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSSITSEELNYLVFRYLQESGLLHSAFVLGYEAGINKCNIDGNLVPPRALITFVQKGLQYLEMEANLSNSDVDMDEDFSFLQPMDLITKDVCELRQMVKEKKKNLNGDRDKENDVDRGHEIEHGRVKExxxxxxxxxxxxxxxxxxxxxEPEKQHESHPDKEMLTVQEEKVNSKPEENGVLQGEKGPEPMDIATTSASESFEIPNSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLDFRM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	563	2.2.26 [Sep-21-2011]
Q6GPC6	522	F-box-like/WD repeat-cont	N/A	no	0.916	0.988	0.501	1e-156
Q7SZM9	519	F-box-like/WD repeat-cont	N/A	no	0.911	0.988	0.498	1e-156
Q8BHJ5	514	F-box-like/WD repeat-cont	yes	no	0.902	0.988	0.496	1e-156
Q9BQ87	522	F-box-like/WD repeat-cont	yes	no	0.912	0.984	0.498	1e-155
Q9QXE7	527	F-box-like/WD repeat-cont	no	no	0.923	0.986	0.500	1e-154
Q4R8H1	569	F-box-like/WD repeat-cont	N/A	no	0.909	0.899	0.491	1e-154
O60907	577	F-box-like/WD repeat-cont	no	no	0.923	0.901	0.492	1e-154
Q9BZK7	514	F-box-like/WD repeat-cont	no	no	0.900	0.986	0.486	1e-153
Q95RJ9	700	F-box-like/WD repeat-cont	yes	no	0.642	0.517	0.594	1e-131
Q8YRI1	1526	Uncharacterized WD repeat	yes	no	0.568	0.209	0.324	3e-45

>sp|Q6GPC6|TB1RB_XENLA F-box-like/WD repeat-containing protein TBL1XR1-B OS=Xenopus laevis GN=tbl1xr1-b PE=2 SV=1

 Score =  553 bits (1424), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 283/564 (50%), Positives = 364/564 (64%), Gaps = 48/564 (8%)

Query: 3   SITSEELNYLVFRYLQESGLLHSAFVLGYEAGINKCNIDGNLVPPRALITFVQKGLQYLE 62
           SI+S+E+N+LV+RYLQESG  HSAF  G E+ I++ NI+G LVPP ALI+ +QKGLQY+E
Sbjct: 2   SISSDEVNFLVYRYLQESGFSHSAFTFGIESHISQSNINGALVPPAALISIIQKGLQYVE 61

Query: 63  MEANLSNSDVDMD-EDFSFLQPMDLITKDVCELRQMVKEKKKNLNGDRDKENDVDRGHEI 121
            E +++      D      L  +D +  DV + RQ            RDK          
Sbjct: 62  AEVSINEDGTLFDGRPIESLSLIDAVMPDVVQTRQQAY---------RDKLA-------- 104

Query: 122 EHGRVKEKERLDREKERERDKERVENEKEPEKQHESHPDKEMLTVQEEKVNSKPEENGVL 181
              + ++                  N++ P K  ES  + E             E  G  
Sbjct: 105 ---QQQQAAAAAAAAAAAAAATSANNQQPPAKNGESTANGE-------------ENGGHA 148

Query: 182 QGEKGPEPMDIATTSASESFEIPNSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARI 241
                 + M++         EIP S   +L GH SEV  CAW+P   LLASGSGDSTARI
Sbjct: 149 LANNHTDMMEV-----DGDVEIPPSKAVVLRGHESEVFICAWNPVSDLLASGSGDSTARI 203

Query: 242 WTIADGTSNGGAQNGPLNVLVLKHV---KGRTNEKSKDVTTLDWNGEGTLLATGSYDGQA 298
           W +++ +++G  Q      LVL+H     G+    +KDVT+LDWN EGTLLATGSYDG A
Sbjct: 204 WNLSENSTSGSTQ------LVLRHCIREGGQDVPSNKDVTSLDWNSEGTLLATGSYDGFA 257

Query: 299 RIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSG 358
           RIW+ +G+L  TL +HKGPIF+LKWNKKG+++L+   DKT I+WD  T E KQQF FHS 
Sbjct: 258 RIWTKDGNLASTLGQHKGPIFALKWNKKGNFILSAGVDKTTIIWDAHTGEAKQQFPFHSA 317

Query: 359 PTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD 418
           P LDVDW++N +FA+ STD  I+VCK+G++RPIKTF GH  EVN +KWDPTG+LLASCSD
Sbjct: 318 PALDVDWQSNNTFASCSTDMCIHVCKLGQDRPIKTFQGHTNEVNAIKWDPTGNLLASCSD 377

Query: 419 DVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDV 478
           D+T KIW+MK D  VHDL+ H+KEIYTI+WSPTG GTNNPN  L+LASASFDSTV+LWDV
Sbjct: 378 DMTLKIWSMKHDTCVHDLQAHNKEIYTIKWSPTGPGTNNPNANLMLASASFDSTVRLWDV 437

Query: 479 ELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEV 538
           + G  +++L  H+EPVYS+AFSP G YLASGS DK +HIW+ + G +V +Y G GGIFEV
Sbjct: 438 DRGICIHTLTKHQEPVYSVAFSPDGRYLASGSFDKCVHIWNTQTGALVHSYRGTGGIFEV 497

Query: 539 CWNKEGDKIAACFANHTVCVLDFR 562
           CWN  GDK+ A  ++ +VCVLD R
Sbjct: 498 CWNAAGDKVGASASDGSVCVLDLR 521

F-box-like protein which acts as an integral component of the N-CoR transcriptional corepressor complex. Probably regulates transcription activation mediated by nuclear receptors. May mediate the recruitment of the 19S proteasome complex, leading to the subsequent proteasomal degradation of the N-CoR complex, thereby allowing cofactor exchange and transcription activation.
Xenopus laevis (taxid: 8355)

>sp|Q7SZM9|TB1RA_XENLA F-box-like/WD repeat-containing protein TBL1XR1-A OS=Xenopus laevis GN=tbl1xr1-a PE=1 SV=1

 Score =  551 bits (1420), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 281/564 (49%), Positives = 365/564 (64%), Gaps = 51/564 (9%)

Query: 3   SITSEELNYLVFRYLQESGLLHSAFVLGYEAGINKCNIDGNLVPPRALITFVQKGLQYLE 62
           SI+S+E+N+LV+RYLQESG  HSAF  G E+ I++ NI+G L PP ALI+ +QKGLQY+E
Sbjct: 2   SISSDEVNFLVYRYLQESGFSHSAFTFGIESHISQSNINGALAPPAALISIIQKGLQYVE 61

Query: 63  MEANLSNSDVDMD-EDFSFLQPMDLITKDVCELRQMVKEKKKNLNGDRDKENDVDRGHEI 121
            E +++      D      L  +D +  DV + RQ            RDK          
Sbjct: 62  AEVSINEDGTLFDGRPIESLSLIDAVMPDVVQTRQQAY---------RDK---------- 102

Query: 122 EHGRVKEKERLDREKERERDKERVENEKEPEKQHESHPDKEMLTVQEEKVNSKPEENGVL 181
               + +++                N++ P K  E+  + E             E  G  
Sbjct: 103 ----LAQQQTAAAAAAAAAAAATPNNQQPPAKNGENTANGE-------------ENGGHA 145

Query: 182 QGEKGPEPMDIATTSASESFEIPNSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARI 241
                 + M++         EIP+S   +L GH SEV  CAW+P   LLASGSGDSTARI
Sbjct: 146 LANNHTDMMEV-----DGDVEIPSSKAVVLRGHESEVFICAWNPVSDLLASGSGDSTARI 200

Query: 242 WTIADGTSNGGAQNGPLNVLVLKHV---KGRTNEKSKDVTTLDWNGEGTLLATGSYDGQA 298
           W +++ +++G  Q      LVL+H     G+    +KDVT+LDWN EGTLLATGSYDG A
Sbjct: 201 WNLSENSTSGSTQ------LVLRHCIREGGQDVPSNKDVTSLDWNSEGTLLATGSYDGFA 254

Query: 299 RIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSG 358
           RIW+ +G+L  TL +HKGPIF+LKWNKKG+++L+   DKT I+WD  T E KQQF FHS 
Sbjct: 255 RIWTKDGNLASTLGQHKGPIFALKWNKKGNFILSAGVDKTTIIWDAHTGEAKQQFPFHSA 314

Query: 359 PTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD 418
           P LDVDW++N +FA+ STD  I+VCK+G++RPIKTF GH  EVN +KWDPTG+LLASCSD
Sbjct: 315 PALDVDWQSNNTFASCSTDMCIHVCKLGQDRPIKTFQGHTNEVNAIKWDPTGNLLASCSD 374

Query: 419 DVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDV 478
           D+T KIW+MK D  VHDL+ H+KEIYTI+WSPTG GTNNPN  L+LASASFDSTV+LWDV
Sbjct: 375 DMTLKIWSMKHDTCVHDLQAHNKEIYTIKWSPTGPGTNNPNANLMLASASFDSTVRLWDV 434

Query: 479 ELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEV 538
           + G  +++L  H+EPVYS+AFSP G YLASGS DK +HIW+ + G +V +Y G GGIFEV
Sbjct: 435 DRGICIHTLTKHQEPVYSVAFSPDGRYLASGSFDKCVHIWNTQTGALVHSYRGTGGIFEV 494

Query: 539 CWNKEGDKIAACFANHTVCVLDFR 562
           CWN  GDK+ A  ++ +VCVLD R
Sbjct: 495 CWNAAGDKVGASASDGSVCVLDLR 518

F-box-like protein which acts as an integral component of the N-CoR transcriptional corepressor complex. Probably regulates transcription activation mediated by nuclear receptors. May mediate the recruitment of the 19S proteasome complex, leading to the subsequent proteasomal degradation of the N-CoR complex, thereby allowing cofactor exchange and transcription activation.

Xenopus laevis (taxid: 8355)

>sp|Q8BHJ5|TBL1R_MOUSE F-box-like/WD repeat-containing protein TBL1XR1 OS=Mus musculus GN=Tbl1xr1 PE=2 SV=1

 Score =  550 bits (1418), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 280/564 (49%), Positives = 366/564 (64%), Gaps = 56/564 (9%)

Query: 3   SITSEELNYLVFRYLQESGLLHSAFVLGYEAGINKCNIDGNLVPPRALITFVQKGLQYLE 62
           SI+S+E+N+LV+RYLQESG  HSAF  G E+ I++ NI+G LVPP ALI+ +QKGLQY+E
Sbjct: 2   SISSDEVNFLVYRYLQESGFSHSAFTFGIESHISQSNINGALVPPAALISIIQKGLQYVE 61

Query: 63  MEANLSNSDVDMD-EDFSFLQPMDLITKDVCELRQMVKEKKKNLNGDRDKENDVDRGHEI 121
            E +++      D      L  +D +  DV + RQ            RDK   + + H  
Sbjct: 62  AEVSINEDGTLFDGRPIESLSLIDAVMPDVVQTRQQAY---------RDK---LAQQHAA 109

Query: 122 EHGRVKEKERLDREKERERDKERVENEKEPEKQHESHPDKEMLTVQEEKVNSKPEENGVL 181
                        ++   ++ E   N +E      ++   +M+ V  +            
Sbjct: 110 A---AAAAAAATNQQGSAKNGENTANGEENGAHTIANNHTDMMEVDGD------------ 154

Query: 182 QGEKGPEPMDIATTSASESFEIPNSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARI 241
                               EIP++   +L GH SEV  CAW+P   LLASGSGDSTARI
Sbjct: 155 -------------------VEIPSNKAVVLRGHESEVFICAWNPVSDLLASGSGDSTARI 195

Query: 242 WTIADGTSNGGAQNGPLNVLVLKHV---KGRTNEKSKDVTTLDWNGEGTLLATGSYDGQA 298
           W +++ +++G  Q      LVL+H     G+    +KDVT+LDWN EGTLLATGSYDG A
Sbjct: 196 WNLSENSTSGPTQ------LVLRHCIREGGQDVPSNKDVTSLDWNSEGTLLATGSYDGFA 249

Query: 299 RIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSG 358
           RIW+ +G+L  TL +HKGPIF+LKWNKKG+++L+   DKT I+WD  T E KQQF FHS 
Sbjct: 250 RIWTKDGNLASTLGQHKGPIFALKWNKKGNFILSAGVDKTTIIWDAHTGEAKQQFPFHSA 309

Query: 359 PTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD 418
           P LDVDW++N +FA+ STD  I+VCK+G++RPIKTF GH  EVN +KWDPTG+LLASCSD
Sbjct: 310 PALDVDWQSNNTFASCSTDMCIHVCKLGQDRPIKTFQGHTNEVNAIKWDPTGNLLASCSD 369

Query: 419 DVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDV 478
           D+T KIW+MKQD  VHDL+ H+KEIYTI+WSPTG GTNNPN  L+LASASFDSTV+LWDV
Sbjct: 370 DMTLKIWSMKQDNCVHDLQAHNKEIYTIKWSPTGPGTNNPNANLMLASASFDSTVRLWDV 429

Query: 479 ELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEV 538
           + G  +++L  H+EPVYS+AFSP G YLASGS DK +HIW+ + G +V +Y G GGIFEV
Sbjct: 430 DRGICIHTLTKHQEPVYSVAFSPDGRYLASGSFDKCVHIWNTQTGALVHSYRGTGGIFEV 489

Query: 539 CWNKEGDKIAACFANHTVCVLDFR 562
           CWN  GDK+ A  ++ +VCVLD R
Sbjct: 490 CWNAAGDKVGASASDGSVCVLDLR 513

F-box-like protein involved in the recruitment of the ubiquitin/19S proteasome complex to nuclear receptor-regulated transcription units. Plays an essential role in transcription activation mediated by nuclear receptors. Probably acts as integral component of the N-Cor corepressor complex that mediates the recruitment of the 19S proteasome complex, leading to the subsequent proteasomal degradation of N-Cor complex, thereby allowing cofactor exchange, and transcription activation.

Mus musculus (taxid: 10090)

>sp|Q9BQ87|TBL1Y_HUMAN F-box-like/WD repeat-containing protein TBL1Y OS=Homo sapiens GN=TBL1Y PE=2 SV=1

 Score =  548 bits (1412), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 282/566 (49%), Positives = 369/566 (65%), Gaps = 52/566 (9%)

Query: 3   SITSEELNYLVFRYLQESGLLHSAFVLGYEAGINKCNIDGNLVPPRALITFVQKGLQYLE 62
           SITS+E+N+LV+RYLQESG  HSAF  G E+ I++ NI+G LVPP ALI+ +QKGLQY+E
Sbjct: 2   SITSDEVNFLVYRYLQESGFSHSAFTFGIESHISQSNINGTLVPPSALISILQKGLQYVE 61

Query: 63  MEANLSNSDVDMDEDFSFLQPMDLITKDVCELRQMVKEKKKNLNGDRDKENDVDRGHEIE 122
            E +++      D      +P++ ++  V  +  +V+ +++                   
Sbjct: 62  AEISINKDGTVFDS-----RPIESLSLIVAVIPDVVQMRQQAFG---------------- 100

Query: 123 HGRVKEKERLDREKERERDKERVENEKE----PEKQHESHPDKEMLTVQEEKVNSKPEEN 178
                  E+L +++      E     K     P    + +P K     +E  VN   EEN
Sbjct: 101 -------EKLTQQQASAAATEASAMAKAATMTPAAISQQNPPKN----REATVNG--EEN 147

Query: 179 GVLQGEKGPEPMDIATTSASESFEIPNSDVTILEGHTSEVCACAWSPAGSLLASGSGDST 238
           G  +     +PM+I         EIP +  T+L GH SEV  CAW+P   LLASGSGDST
Sbjct: 148 GAHEINNHSKPMEI-----DGDVEIPPNKATVLRGHESEVFICAWNPVSDLLASGSGDST 202

Query: 239 ARIWTIADGTSNGGAQNGPLNVLVLKHV---KGRTNEKSKDVTTLDWNGEGTLLATGSYD 295
           ARIW + + ++ G  Q      LVL+H     G     +KDVT+LDWN +GTLLA GSYD
Sbjct: 203 ARIWNLNENSNGGSTQ------LVLRHCIREGGHDVPSNKDVTSLDWNSDGTLLAMGSYD 256

Query: 296 GQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEF 355
           G ARIW+ NG+L  TL +HKGPIF+LKWNKKG+Y+L+   DKT I+WD  T E KQQF F
Sbjct: 257 GFARIWTENGNLASTLGQHKGPIFALKWNKKGNYVLSAGVDKTTIIWDAHTGEAKQQFPF 316

Query: 356 HSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLAS 415
           HS P LDVDW+NN++FA+ STD  I+VC++G + P+KTF GH  EVN +KWDP+G LLAS
Sbjct: 317 HSAPALDVDWQNNMTFASCSTDMCIHVCRLGCDHPVKTFQGHTNEVNAIKWDPSGMLLAS 376

Query: 416 CSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKL 475
           CSDD+T KIW+MKQD  VHDL+ HSKEIYTI+WSPTG  T+NPN  ++LASASFDSTV+L
Sbjct: 377 CSDDMTLKIWSMKQDACVHDLQAHSKEIYTIKWSPTGPATSNPNSSIMLASASFDSTVRL 436

Query: 476 WDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGI 535
           WDVE G   ++L  H+EPVYS+AFSP G+YLASGS DK +HIW+ + G +V +Y G GGI
Sbjct: 437 WDVEQGVCTHTLMKHQEPVYSVAFSPDGKYLASGSFDKYVHIWNTQSGSLVHSYQGTGGI 496

Query: 536 FEVCWNKEGDKIAACFANHTVCVLDF 561
           FEVCWN  GDK+ A  ++ +VCVLD 
Sbjct: 497 FEVCWNARGDKVGASASDGSVCVLDL 522

F-box-like protein involved in the recruitment of the ubiquitin/19S proteasome complex to nuclear receptor-regulated transcription units. Plays an essential role in transcription activation mediated by nuclear receptors. Probably acts as integral component of corepressor complexes that mediates the recruitment of the 19S proteasome complex, leading to the subsequent proteasomal degradation of transcription repressor complexes, thereby allowing cofactor exchange.

Homo sapiens (taxid: 9606)

>sp|Q9QXE7|TBL1X_MOUSE F-box-like/WD repeat-containing protein TBL1X OS=Mus musculus GN=Tbl1x PE=2 SV=2

 Score =  545 bits (1405), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 283/565 (50%), Positives = 369/565 (65%), Gaps = 45/565 (7%)

Query: 3   SITSEELNYLVFRYLQESGLLHSAFVLGYEAGINKCNIDGNLVPPRALITFVQKGLQYLE 62
           SITS+E+N+LV+RYLQESG  HSAF  G E+ I++ NI+G LVPP ALI+ +QKGLQY+E
Sbjct: 2   SITSDEVNFLVYRYLQESGFSHSAFTFGIESHISQSNINGTLVPPAALISILQKGLQYVE 61

Query: 63  MEANLSNSDVDMDEDFSFL--QPMDLITKDVCELRQMVKEKKKNLNGDRDKENDVDRGHE 120
            E       + ++ED +    +P++ ++     +  +V+ +++     R+K         
Sbjct: 62  AE-------ISINEDGTVFDGRPIESLSLIDAVMPDVVQTRQQAF---REK--------- 102

Query: 121 IEHGRVKEKERLDREKERERDKERVENEKEPEKQHESHPDKEMLTVQEEKVNSKPEENGV 180
                 +++                     P    + +P K      E  VN   EENG 
Sbjct: 103 ----LAQQQANAAAAAAAAAATATSTAATTPAAAAQQNPPKN----GEATVNG--EENGA 152

Query: 181 LQGEKGPEPMDIATTSASESFEIPNSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTAR 240
                  +PM+I         EIP S  T+L GH SEV  CAW+P   LLASGSGDSTAR
Sbjct: 153 HAINNHSKPMEI-----DGDVEIPPSKATVLRGHESEVFICAWNPVSDLLASGSGDSTAR 207

Query: 241 IWTIADGTSNGGAQNGPLNVLVLKHV---KGRTNEKSKDVTTLDWNGEGTLLATGSYDGQ 297
           IW + + ++ G  Q      LVL+H     G     +KDVT+LDWN +GTLLATGSYDG 
Sbjct: 208 IWNLNENSNGGSTQ------LVLRHCIREGGHDVPSNKDVTSLDWNSDGTLLATGSYDGF 261

Query: 298 ARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHS 357
           ARIW+ +G+L  TL +HKGPIF+LKWNKKG+Y+L+   DKT I+WD  T E KQQF FHS
Sbjct: 262 ARIWTEDGNLASTLGQHKGPIFALKWNKKGNYILSAGVDKTTIIWDAHTGEAKQQFPFHS 321

Query: 358 GPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCS 417
            P LDVDW+NN +FA+ STD  I+VC++G +RP+KTF GH  EVN +KWDP+G LLASCS
Sbjct: 322 APALDVDWQNNTTFASCSTDMCIHVCRLGCDRPVKTFQGHTNEVNAIKWDPSGMLLASCS 381

Query: 418 DDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWD 477
           DD+T KIW+MKQD  VHDL+ HSKEIYTI+WSPTG  T+NPN  ++LASASFDSTV+LWD
Sbjct: 382 DDMTLKIWSMKQDACVHDLQAHSKEIYTIKWSPTGPATSNPNSNIMLASASFDSTVRLWD 441

Query: 478 VELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFE 537
           VE G  +++L  H+EPVYS+AFSP G+YLASGS DK +HIW+ + G +V +Y G GGIFE
Sbjct: 442 VERGVCIHTLTKHQEPVYSVAFSPDGKYLASGSFDKCVHIWNTQSGSLVHSYRGTGGIFE 501

Query: 538 VCWNKEGDKIAACFANHTVCVLDFR 562
           VCWN  GDK+ A  ++ +VCVLD R
Sbjct: 502 VCWNARGDKVGASASDGSVCVLDLR 526

F-box-like protein involved in the recruitment of the ubiquitin/19S proteasome complex to nuclear receptor-regulated transcription units. Plays an essential role in transcription activation mediated by nuclear receptors. Probably acts as integral component of corepressor complexes that mediates the recruitment of the 19S proteasome complex, leading to the subsequent proteasomal degradation of transcription repressor complexes, thereby allowing cofactor exchange.

Mus musculus (taxid: 10090)

>sp|Q4R8H1|TBL1X_MACFA F-box-like/WD repeat-containing protein TBL1X OS=Macaca fascicularis GN=TBL1X PE=2 SV=1

 Score =  545 bits (1405), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 277/564 (49%), Positives = 362/564 (64%), Gaps = 52/564 (9%)

Query: 3   SITSEELNYLVFRYLQESGLLHSAFVLGYEAGINKCNIDGNLVPPRALITFVQKGLQYLE 62
           SITS+E+N+LV+RYLQESG  HSAF  G E+ I++ NI+G LVPP ALI+ +QKGLQY+E
Sbjct: 53  SITSDEVNFLVYRYLQESGFSHSAFTFGIESHISQSNINGTLVPPAALISILQKGLQYVE 112

Query: 63  MEANLSNSDVDMD-EDFSFLQPMDLITKDVCELRQMVKEKKKNLNGDRDKENDVDRGHEI 121
            E +++      D      L  +D +  DV + RQ    +K                   
Sbjct: 113 AEISINEDGTVFDGRPIESLSLIDAVMPDVVQTRQRAFREK------------------- 153

Query: 122 EHGRVKEKERLDREKERERDKERVENEKEPEKQHESHPDKEMLTVQEEKVNSKPEENGVL 181
               + +++                +++ P K             +E  VN   EEN   
Sbjct: 154 ----LAQQQASAAAAAAAATTSASVSQQNPSKN------------REATVNG--EENRAH 195

Query: 182 QGEKGPEPMDIATTSASESFEIPNSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARI 241
                 +PM+I         +IP+S  T+L GH SEV  CAW+P   LLASGSGDSTARI
Sbjct: 196 SVNNHAKPMEI-----DGEVDIPSSKATVLRGHESEVFICAWNPVSDLLASGSGDSTARI 250

Query: 242 WTIADGTSNGGAQNGPLNVLVLKHV---KGRTNEKSKDVTTLDWNGEGTLLATGSYDGQA 298
           W + + ++ G  Q      LVL+H     G     +KDVT+LDWN  GTLLATGSYDG A
Sbjct: 251 WNLNENSNGGSTQ------LVLRHCIREGGHDVPSNKDVTSLDWNTNGTLLATGSYDGFA 304

Query: 299 RIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSG 358
           RIW+ +G+L  TL +HKGPIF+LKWN+KG+Y+L+   DKT I+WD  T E KQQF FHS 
Sbjct: 305 RIWTEDGNLASTLGQHKGPIFALKWNRKGNYILSAGVDKTTIIWDAHTGEAKQQFPFHSA 364

Query: 359 PTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD 418
           P LDVDW+NN++FA+ STD  I+VC++G +RP+KTF GH  EVN +KWDP+G LLASCSD
Sbjct: 365 PALDVDWQNNMTFASCSTDMCIHVCRLGCDRPVKTFQGHTNEVNAIKWDPSGMLLASCSD 424

Query: 419 DVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDV 478
           D+T KIW+MKQ+  +HDL+ H+KEIYTI+WSPTG  T+NPN  ++LASASFDSTV+LWD+
Sbjct: 425 DMTLKIWSMKQEVCIHDLQAHNKEIYTIKWSPTGPATSNPNSNIMLASASFDSTVRLWDI 484

Query: 479 ELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEV 538
           E G   ++L  H+EPVYS+AFSP G YLASGS DK +HIW+ + G +V +Y G GGIFEV
Sbjct: 485 ERGVCTHTLTKHQEPVYSVAFSPDGRYLASGSFDKCVHIWNTQSGNLVHSYRGTGGIFEV 544

Query: 539 CWNKEGDKIAACFANHTVCVLDFR 562
           CWN  GDK+ A  ++ +VCVLD R
Sbjct: 545 CWNARGDKVGASASDGSVCVLDLR 568

F-box-like protein involved in the recruitment of the ubiquitin/19S proteasome complex to nuclear receptor-regulated transcription units. Plays an essential role in transcription activation mediated by nuclear receptors. Probably acts as integral component of corepressor complexes that mediates the recruitment of the 19S proteasome complex, leading to the subsequent proteasomal degradation of transcription repressor complexes, thereby allowing cofactor exchange.

Macaca fascicularis (taxid: 9541)

>sp|O60907|TBL1X_HUMAN F-box-like/WD repeat-containing protein TBL1X OS=Homo sapiens GN=TBL1X PE=1 SV=3

 Score =  545 bits (1403), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 278/564 (49%), Positives = 360/564 (63%), Gaps = 44/564 (7%)

Query: 3   SITSEELNYLVFRYLQESGLLHSAFVLGYEAGINKCNIDGNLVPPRALITFVQKGLQYLE 62
           SITS+E+N+LV+RYLQESG  HSAF  G E+ I++ NI+G LVPP ALI+ +QKGLQY+E
Sbjct: 53  SITSDEVNFLVYRYLQESGFSHSAFTFGIESHISQSNINGTLVPPAALISILQKGLQYVE 112

Query: 63  MEANLSNSDVDMD-EDFSFLQPMDLITKDVCELRQMVKEKKKNLNGDRDKENDVDRGHEI 121
            E +++      D      L  +D +  DV + RQ    +K                   
Sbjct: 113 AEISINEDGTVFDGRPIESLSLIDAVMPDVVQTRQQAFREK------------------- 153

Query: 122 EHGRVKEKERLDREKERERDKERVENEKEPEKQHESHPDKEMLTVQEEKVNSKPEENGVL 181
               + +++                           +P K     +E  VN   EEN   
Sbjct: 154 ----LAQQQASAAAAAAAATAAATAATTTSAGVSHQNPSKN----REATVNG--EENRAH 203

Query: 182 QGEKGPEPMDIATTSASESFEIPNSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARI 241
                 +PM+I         EIP+S  T+L GH SEV  CAW+P   LLASGSGDSTARI
Sbjct: 204 SVNNHAKPMEI-----DGEVEIPSSKATVLRGHESEVFICAWNPVSDLLASGSGDSTARI 258

Query: 242 WTIADGTSNGGAQNGPLNVLVLKHV---KGRTNEKSKDVTTLDWNGEGTLLATGSYDGQA 298
           W + + ++ G  Q      LVL+H     G     +KDVT+LDWN  GTLLATGSYDG A
Sbjct: 259 WNLNENSNGGSTQ------LVLRHCIREGGHDVPSNKDVTSLDWNTNGTLLATGSYDGFA 312

Query: 299 RIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSG 358
           RIW+ +G+L  TL +HKGPIF+LKWN+KG+Y+L+   DKT I+WD  T E KQQF FHS 
Sbjct: 313 RIWTEDGNLASTLGQHKGPIFALKWNRKGNYILSAGVDKTTIIWDAHTGEAKQQFPFHSA 372

Query: 359 PTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD 418
           P LDVDW+NN +FA+ STD  I+VC++G +RP+KTF GH  EVN +KWDP+G LLASCSD
Sbjct: 373 PALDVDWQNNTTFASCSTDMCIHVCRLGCDRPVKTFQGHTNEVNAIKWDPSGMLLASCSD 432

Query: 419 DVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDV 478
           D+T KIW+MKQ+  +HDL+ H+KEIYTI+WSPTG  T+NPN  ++LASASFDSTV+LWD+
Sbjct: 433 DMTLKIWSMKQEVCIHDLQAHNKEIYTIKWSPTGPATSNPNSNIMLASASFDSTVRLWDI 492

Query: 479 ELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEV 538
           E G   ++L  H+EPVYS+AFSP G+YLASGS DK +HIW+ + G +V +Y G GGIFEV
Sbjct: 493 ERGVCTHTLTKHQEPVYSVAFSPDGKYLASGSFDKCVHIWNTQSGNLVHSYRGTGGIFEV 552

Query: 539 CWNKEGDKIAACFANHTVCVLDFR 562
           CWN  GDK+ A  ++ +VCVLD R
Sbjct: 553 CWNARGDKVGASASDGSVCVLDLR 576

F-box-like protein involved in the recruitment of the ubiquitin/19S proteasome complex to nuclear receptor-regulated transcription units. Plays an essential role in transcription activation mediated by nuclear receptors. Probably acts as integral component of corepressor complexes that mediates the recruitment of the 19S proteasome complex, leading to the subsequent proteasomal degradation of transcription repressor complexes, thereby allowing cofactor exchange.

Homo sapiens (taxid: 9606)

>sp|Q9BZK7|TBL1R_HUMAN F-box-like/WD repeat-containing protein TBL1XR1 OS=Homo sapiens GN=TBL1XR1 PE=1 SV=1

 Score =  543 bits (1398), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 275/565 (48%), Positives = 369/565 (65%), Gaps = 58/565 (10%)

Query: 3   SITSEELNYLVFRYLQESGLLHSAFVLGYEAGINKCNIDGNLVPPRALITFVQKGLQYLE 62
           SI+S+E+N+LV+RYLQESG  HSAF  G E+ I++ NI+G LVPP ALI+ +QKGLQY+E
Sbjct: 2   SISSDEVNFLVYRYLQESGFSHSAFTFGIESHISQSNINGALVPPAALISIIQKGLQYVE 61

Query: 63  MEANLSNSDVDMDEDFSFL--QPMDLITKDVCELRQMVKEKKKNLNGDRDKENDVDRGHE 120
            E       V ++ED +    +P++ ++     +  +V+ +++            D+  +
Sbjct: 62  AE-------VSINEDGTLFDGRPIESLSLIDAVMPDVVQTRQQAYR---------DKLAQ 105

Query: 121 IEHGRVKEKERLDREKERERDKERVENEKEPEKQHESHPDKEMLTVQEEKVNSKPEENGV 180
            +            ++   ++ E   N +E      ++   +M+ V  +           
Sbjct: 106 QQAAAAAAAAAAASQQGSAKNGENTANGEENGAHTIANNHTDMMEVDGD----------- 154

Query: 181 LQGEKGPEPMDIATTSASESFEIPNSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTAR 240
                                EIP +   +L GH SEV  CAW+P   LLASGSGDSTAR
Sbjct: 155 --------------------VEIPPNKAVVLRGHESEVFICAWNPVSDLLASGSGDSTAR 194

Query: 241 IWTIADGTSNGGAQNGPLNVLVLKHV---KGRTNEKSKDVTTLDWNGEGTLLATGSYDGQ 297
           IW +++ +++G  Q      LVL+H     G+    +KDVT+LDWN EGTLLATGSYDG 
Sbjct: 195 IWNLSENSTSGSTQ------LVLRHCIREGGQDVPSNKDVTSLDWNSEGTLLATGSYDGF 248

Query: 298 ARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHS 357
           ARIW+ +G+L  TL +HKGPIF+LKWNKKG+++L+   DKT I+WD  T E KQQF FHS
Sbjct: 249 ARIWTKDGNLASTLGQHKGPIFALKWNKKGNFILSAGVDKTTIIWDAHTGEAKQQFPFHS 308

Query: 358 GPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCS 417
            P LDVDW++N +FA+ STD  I+VCK+G++RPIKTF GH  EVN +KWDPTG+LLASCS
Sbjct: 309 APALDVDWQSNNTFASCSTDMCIHVCKLGQDRPIKTFQGHTNEVNAIKWDPTGNLLASCS 368

Query: 418 DDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWD 477
           DD+T KIW+MKQD  VHDL+ H+KEIYTI+WSPTG GTNNPN  L+LASASFDSTV+LWD
Sbjct: 369 DDMTLKIWSMKQDNCVHDLQAHNKEIYTIKWSPTGPGTNNPNANLMLASASFDSTVRLWD 428

Query: 478 VELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFE 537
           V+ G  +++L  H+EPVYS+AFSP G YLASGS DK +HIW+ + G +V +Y G GGIFE
Sbjct: 429 VDRGICIHTLTKHQEPVYSVAFSPDGRYLASGSFDKCVHIWNTQTGALVHSYRGTGGIFE 488

Query: 538 VCWNKEGDKIAACFANHTVCVLDFR 562
           VCWN  GDK+ A  ++ +VCVLD R
Sbjct: 489 VCWNAAGDKVGASASDGSVCVLDLR 513

F-box-like protein involved in the recruitment of the ubiquitin/19S proteasome complex to nuclear receptor-regulated transcription units. Plays an essential role in transcription activation mediated by nuclear receptors. Probably acts as integral component of the N-Cor corepressor complex that mediates the recruitment of the 19S proteasome complex, leading to the subsequent proteasomal degradation of N-Cor complex, thereby allowing cofactor exchange, and transcription activation.

Homo sapiens (taxid: 9606)

>sp|Q95RJ9|EBI_DROME F-box-like/WD repeat-containing protein ebi OS=Drosophila melanogaster GN=ebi PE=1 SV=2

 Score =  468 bits (1205), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 224/377 (59%), Positives = 274/377 (72%), Gaps = 15/377 (3%)

Query: 189 PMDIATTSASESFEIPNSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGT 248
           PMDI      E+ EIP S   +L GH SEV  CAW+P+  LLASGSGDSTARIW ++D  
Sbjct: 334 PMDI-----DENIEIPESKARVLRGHESEVFICAWNPSRDLLASGSGDSTARIWDMSDAN 388

Query: 249 SNGGAQNGPLNVLVLKHV---KGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNG 305
           +N        N LVL+H     G     +KDVT+LDWN +G+LLATGSYDG ARIW T+G
Sbjct: 389 TNS-------NQLVLRHCIQKGGAEVPSNKDVTSLDWNCDGSLLATGSYDGYARIWKTDG 441

Query: 306 DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDW 365
            L  TL +HKGPIF+LKWNK G+Y+L+   DKT I+WD  T +  QQF FHS P LDVDW
Sbjct: 442 RLASTLGQHKGPIFALKWNKCGNYILSAGVDKTTIIWDASTGQCTQQFAFHSAPALDVDW 501

Query: 366 RNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIW 425
           + N +FA+ STD  I+VC++G N PIKTF GH  EVN +KW P G LLASCSDD+T KIW
Sbjct: 502 QTNQAFASCSTDQRIHVCRLGVNEPIKTFKGHTNEVNAIKWCPQGQLLASCSDDMTLKIW 561

Query: 426 NMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLY 485
           +M +D+  HDL+ HSKEIYTI+WSPTG GTNNPN  LILASASFDSTV+LWDVE G  ++
Sbjct: 562 SMNRDRCCHDLQAHSKEIYTIKWSPTGPGTNNPNTNLILASASFDSTVRLWDVERGSCIH 621

Query: 486 SLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGD 545
           +L  H EPVYS+AFSP G++LASGS DK +HIWS + G++V +Y G GGIFEVCWN +G 
Sbjct: 622 TLTKHTEPVYSVAFSPDGKHLASGSFDKCVHIWSTQTGQLVHSYKGTGGIFEVCWNSKGT 681

Query: 546 KIAACFANHTVCVLDFR 562
           K+ A  ++ +V VLD R
Sbjct: 682 KVGASASDGSVFVLDLR 698

F-box-like component of E3 ubiquitin ligase complexes; involved in R7 photoreceptor cell differentiation, cone cell development and neuronal cell cycle control. E3 ubiquitin ligase complexes mediate ubiquitination and subsequent proteasomal degradation of target proteins. Required for specification of R7 photoreceptor cell fate in the eye by participating in the ubiquitination and subsequent proteasomal degradation of Tramtrack (ttk), a general inhibitor of photoreceptor differentiation. Required to block the S phase entry in the peripheral nervous system and central nervous system in a process that does not involve the degradation of ttk. Involved in cone cell development by preventing the transcriptional repression mediated by Su(H) on Dl, probably by participating in a E3 complex that contains sno and mediates the ubiquitination and subsequent proteasomal degradation of some component of the Su(H) repressor complex.

Drosophila melanogaster (taxid: 7227)

>sp|Q8YRI1|YY46_NOSS1 Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr3466 PE=4 SV=1

 Score =  183 bits (465), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 117/361 (32%), Positives = 193/361 (53%), Gaps = 41/361 (11%)

Query: 211  LEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRT 270
            L+GHT+ V A A+SP G+ LASGSGD T R+W I+                 L  ++G T
Sbjct: 1154 LQGHTNWVNAVAFSPDGATLASGSGDQTVRLWDISSSK-------------CLYILQGHT 1200

Query: 271  NEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGD-LKCTLSKHKGPIFSLKWNKKGDY 329
            +     V ++ +N +G+ LA+GS D   R+W  N     CT   H   + S+ +N  G  
Sbjct: 1201 SW----VNSVVFNPDGSTLASGSSDQTVRLWEINSSKCLCTFQGHTSWVNSVVFNPDGSM 1256

Query: 330  LLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSF-------ATSSTDNMIYV 382
            L +GS DKT  +WD+ + +    F+ H+      +W N+V+F       A+ S D  + +
Sbjct: 1257 LASGSSDKTVRLWDISSSKCLHTFQGHT------NWVNSVAFNPDGSMLASGSGDQTVRL 1310

Query: 383  CKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKE 442
             +I  ++ + TF GH   V+ V + P G++LAS SDD T ++W++   + ++    H+  
Sbjct: 1311 WEISSSKCLHTFQGHTSWVSSVTFSPDGTMLASGSDDQTVRLWSISSGECLYTFLGHTNW 1370

Query: 443  IYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPT 502
            + ++ +SP G+         ILAS S D TV+LW +  GK LY+L GH   V S+ FSP 
Sbjct: 1371 VGSVIFSPDGA---------ILASGSGDQTVRLWSISSGKCLYTLQGHNNWVGSIVFSPD 1421

Query: 503  GEYLASGSLDKSMHIWSLKEGKIVKTYTGN-GGIFEVCWNKEGDKIAACFANHTVCVLDF 561
            G  LASGS D+++ +W++  G+ + T  G+   +  V ++ +G  +A+   + T+ + D 
Sbjct: 1422 GTLLASGSDDQTVRLWNISSGECLYTLHGHINSVRSVAFSSDGLILASGSDDETIKLWDV 1481

Query: 562  R 562
            +
Sbjct: 1482 K 1482

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	563
449448282	594	PREDICTED: F-box-like/WD repeat-containi	0.991	0.939	0.779	0.0
356511919	560	PREDICTED: F-box-like/WD repeat-containi	0.991	0.996	0.787	0.0
225438892	590	PREDICTED: F-box-like/WD repeat-containi	0.991	0.945	0.766	0.0
255567933	582	Polyadenylation factor subunit, putative	1.0	0.967	0.783	0.0
356563556	614	PREDICTED: F-box-like/WD repeat-containi	0.994	0.912	0.726	0.0
356511917	607	PREDICTED: F-box-like/WD repeat-containi	0.994	0.922	0.731	0.0
224115052	532	predicted protein [Populus trichocarpa]	0.944	1.0	0.776	0.0
356541727	558	PREDICTED: F-box-like/WD repeat-containi	0.991	1.0	0.760	0.0
224081793	517	predicted protein [Populus trichocarpa]	0.918	1.0	0.758	0.0
297797649	617	WD-40 repeat family protein [Arabidopsis	0.994	0.907	0.682	0.0

>gi|449448282|ref|XP_004141895.1| PREDICTED: F-box-like/WD repeat-containing protein TBL1XR1-like [Cucumis sativus] gi|449513123|ref|XP_004164237.1| PREDICTED: F-box-like/WD repeat-containing protein TBL1XR1-like [Cucumis sativus]

 Score =  929 bits (2402), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 467/599 (77%), Positives = 516/599 (86%), Gaps = 41/599 (6%)

Query: 1   MSSITSEELNYLVFRYLQESGLLHSAFVLGYEAGINKCNIDGNLVPPRALITFVQKGLQY 60
           M+SITS ELNYLVFRYLQESG +HSAF LGYEAGINKC+IDGNLVPP AL+T VQKGLQY
Sbjct: 1   MTSITSVELNYLVFRYLQESGFIHSAFALGYEAGINKCSIDGNLVPPGALVTVVQKGLQY 60

Query: 61  LEMEANLSNSDVDMDEDFSFLQPMDLITKDVCELRQMVKEKKKNLNGDRDKENDVDRGHE 120
           LEMEANLSN+D D+DEDFSFLQP+DLITKDV ELRQ++K+K+K+L  D++K+ D+D+  E
Sbjct: 61  LEMEANLSNNDTDIDEDFSFLQPLDLITKDVHELRQIIKDKRKSLVKDKEKDKDLDKELE 120

Query: 121 IEHGRVKEKERLDREKER------------------------------------ERDKER 144
            E GRV+EKER + E ER                                    E+D+++
Sbjct: 121 SERGRVREKERRESEVERGRAREKERLEREKERVEREKERLEREKERLEREKEHEKDRDK 180

Query: 145 VENEKEPEKQHESHPDKEMLTVQEEKVNSKPEENGVLQGEKGPEPMDIATTSASESFEIP 204
           +E +KE EKQHE+  D++M+  Q+EKV++   ENGV       EPMDI+TTS S+S EI 
Sbjct: 181 IEKDKEREKQHENFTDRDMVMDQDEKVHANQGENGVFG-----EPMDISTTSTSQSCEIS 235

Query: 205 NSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLK 264
           +SDVTIL+GHTSEVCACAW+P GSLLASGSGDSTARIW IADG+S  G Q+GPLNVLVLK
Sbjct: 236 SSDVTILQGHTSEVCACAWNPTGSLLASGSGDSTARIWPIADGSSRSGGQSGPLNVLVLK 295

Query: 265 HVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWN 324
           HVKGRTNEKSKDVTTLDWNG+GTLLATGSYDGQARIWSTNG+L+ TLSKHKGPIFSLKWN
Sbjct: 296 HVKGRTNEKSKDVTTLDWNGDGTLLATGSYDGQARIWSTNGELRSTLSKHKGPIFSLKWN 355

Query: 325 KKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCK 384
           KKGDYLLTGSCDKTAIVWDVK EEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCK
Sbjct: 356 KKGDYLLTGSCDKTAIVWDVKAEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCK 415

Query: 385 IGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIY 444
           IGE RPIKTFAGHQGEVNCVKWDPTGSLLASCSDD+TAKIW+MKQDKYV+DLREHSKEIY
Sbjct: 416 IGETRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDITAKIWSMKQDKYVYDLREHSKEIY 475

Query: 445 TIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGE 504
           TIRWSPTG GTNNPNQQL+LASASFDSTVKLWDVELGKL+ SLNGHREPVYS+AFSP GE
Sbjct: 476 TIRWSPTGPGTNNPNQQLVLASASFDSTVKLWDVELGKLICSLNGHREPVYSVAFSPNGE 535

Query: 505 YLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLDFRM 563
           YLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFAN+TVCVLDFRM
Sbjct: 536 YLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANNTVCVLDFRM 594

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356511919|ref|XP_003524669.1| PREDICTED: F-box-like/WD repeat-containing protein TBL1XR1-like isoform 2 [Glycine max]

 Score =  919 bits (2375), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 445/565 (78%), Positives = 500/565 (88%), Gaps = 7/565 (1%)

Query: 1   MSSITSEELNYLVFRYLQESGLLHSAFVLGYEAGINKCNIDGNLVPPRALITFVQKGLQY 60
           M+SI+S ELNYLV+RYLQESG  H+AF  GYEAGINKC+IDGNLVP  AL+TFVQKGLQY
Sbjct: 1   MASISSAELNYLVYRYLQESGFTHAAFTFGYEAGINKCSIDGNLVPSGALVTFVQKGLQY 60

Query: 61  LEMEANLSNSDVDMDEDFSFLQPMDLITKDVCELRQMVKEKKKNLNGDRDKENDVDRGHE 120
            EMEANLSN D D++EDFSFLQP+DLITKDV ELRQM+ E++K L  +R KE + +   E
Sbjct: 61  FEMEANLSNCDADLEEDFSFLQPLDLITKDVHELRQMISERRKKLQKERKKEFEKEH--E 118

Query: 121 IEHGRVKEKERLDREKERE--RDKERVENEKEPEKQHESHPDKEMLTVQEEKVNSKPEEN 178
            E  RV+EK+R +REKE+E  +D++++EN+KE E+QH     +EM    E++V  K EEN
Sbjct: 119 GERVRVREKDRREREKEKEVVKDRKKIENDKEREQQHGDQTVREMFVDHEDRVPVKLEEN 178

Query: 179 GVLQGEKGPEPMDIATTSASESFEIPNSDVTILEGHTSEVCACAWSPAGSLLASGSGDST 238
           G +    GPEPMDI+TTS S+   IP+SDVTILEGHTSEVCACAWSP GSLLASGSGDST
Sbjct: 179 GAV---GGPEPMDISTTSTSQLCGIPSSDVTILEGHTSEVCACAWSPTGSLLASGSGDST 235

Query: 239 ARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQA 298
           ARIWTIA+G    G++NGPLNVLVLKHV+G+TNEKSKDVTTLDWNGEGTLLATGSYDGQA
Sbjct: 236 ARIWTIAEGRCKPGSENGPLNVLVLKHVRGKTNEKSKDVTTLDWNGEGTLLATGSYDGQA 295

Query: 299 RIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSG 358
           RIW+TNG+LK TLSKHKGPIFSLKWNKKGDYLLTGSCD+TAIVWDVK EEWKQQFEFHSG
Sbjct: 296 RIWTTNGELKSTLSKHKGPIFSLKWNKKGDYLLTGSCDQTAIVWDVKAEEWKQQFEFHSG 355

Query: 359 PTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD 418
           PTLDVDWRNNVSFATSSTDNMI+VCKIGE  PIKTF GHQGEVNCVKWDPTGSLLASCSD
Sbjct: 356 PTLDVDWRNNVSFATSSTDNMIHVCKIGETHPIKTFTGHQGEVNCVKWDPTGSLLASCSD 415

Query: 419 DVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDV 478
           D+TAKIW+MKQD Y+HDLREHSKEIYTIRWSPTG GTNNPN +L+LASASFDSTVKLWDV
Sbjct: 416 DITAKIWSMKQDTYLHDLREHSKEIYTIRWSPTGPGTNNPNHKLVLASASFDSTVKLWDV 475

Query: 479 ELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEV 538
           ELGKL+YSL+GHR PVYS+AFSP G+YL SGSLD+SMHIWSL++GKIVKTYTGNGGIFEV
Sbjct: 476 ELGKLIYSLDGHRHPVYSVAFSPNGDYLVSGSLDRSMHIWSLRDGKIVKTYTGNGGIFEV 535

Query: 539 CWNKEGDKIAACFANHTVCVLDFRM 563
           CWNKEGDKIAACFAN+TVCVLDFRM
Sbjct: 536 CWNKEGDKIAACFANNTVCVLDFRM 560

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225438892|ref|XP_002283852.1| PREDICTED: F-box-like/WD repeat-containing protein TBL1X-like isoform 1 [Vitis vinifera]

 Score =  915 bits (2364), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 456/595 (76%), Positives = 507/595 (85%), Gaps = 37/595 (6%)

Query: 1   MSSITSEELNYLVFRYLQESGLLHSAFVLGYEAGINKCNIDGNLVPPRALITFVQKGLQY 60
           MSSITS ELNYLVFRYL ESG  HSAF LGYEAGINKC IDGN+VPP ALITFVQKGLQ+
Sbjct: 1   MSSITSAELNYLVFRYLHESGFTHSAFSLGYEAGINKCPIDGNMVPPGALITFVQKGLQF 60

Query: 61  LEMEANLSNSDVDMDEDFSFLQPMDLITKDVCELRQMVKEKKKNLNGDRDKENDVDRGHE 120
           +EMEANLSNSD D+D+DFSFLQP+DLITKDV +LRQM++EKK+NL  ++DKE+D  + HE
Sbjct: 61  VEMEANLSNSDTDVDDDFSFLQPLDLITKDVHQLRQMIREKKRNLQKEKDKESD--KEHE 118

Query: 121 IEHGRVKEKERLDREKERERDKERVENEKEPEK--------------------------- 153
           +   RV+EKERL+R++ +ER +++   E++  +                           
Sbjct: 119 LVRARVREKERLERQERQERQEKQERQERQEIQERQERQERQERQEKEKEREKEKEREKD 178

Query: 154 -----QHESHPDKEMLTVQEEKVNSKPEENGVLQGEKGPEPMDIATTSASESFEIPNSDV 208
                QH+   D EM T QE+ V  K +ENGV     GPEPMDI+T+S  ++ EIP+SDV
Sbjct: 179 KEREKQHDDQIDTEMTTDQEDVVTVKHDENGV---SGGPEPMDISTSSTFQACEIPSSDV 235

Query: 209 TILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKG 268
           TILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGT     QNGP NVLVLKHVKG
Sbjct: 236 TILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTCRSSVQNGPSNVLVLKHVKG 295

Query: 269 RTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGD 328
           RTNEKSKDVTTLDWNG+GTLLATGSYDGQARIWSTNG+L+ TLSKHKGPIFSLKWN+KGD
Sbjct: 296 RTNEKSKDVTTLDWNGDGTLLATGSYDGQARIWSTNGELRSTLSKHKGPIFSLKWNRKGD 355

Query: 329 YLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGEN 388
           YLLTGSCDKTAIVWDVKTEEWKQQFEFH+GPTLDVDWRNNVSFATSSTDNMIYVCKIGEN
Sbjct: 356 YLLTGSCDKTAIVWDVKTEEWKQQFEFHAGPTLDVDWRNNVSFATSSTDNMIYVCKIGEN 415

Query: 389 RPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRW 448
           RPIKTF+GHQGEVNCVKWDPTG LLASCSDD+TAKIW++KQ+KY+HDLREH+KEIYTIRW
Sbjct: 416 RPIKTFSGHQGEVNCVKWDPTGQLLASCSDDITAKIWSIKQEKYLHDLREHAKEIYTIRW 475

Query: 449 SPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLAS 508
           SPTG GTNNPNQ L+LASASFDSTVKLWDVE GKLL SLNGHR+PVYS+AFSP GEYLAS
Sbjct: 476 SPTGQGTNNPNQPLVLASASFDSTVKLWDVEQGKLLCSLNGHRDPVYSVAFSPNGEYLAS 535

Query: 509 GSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLDFRM 563
           GSLD+SMHIWSLKE KIVKTYTGNGGIFEVCWNKEGDKIAACFAN+TVCVLDFRM
Sbjct: 536 GSLDRSMHIWSLKERKIVKTYTGNGGIFEVCWNKEGDKIAACFANNTVCVLDFRM 590

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255567933|ref|XP_002524944.1| Polyadenylation factor subunit, putative [Ricinus communis] gi|223535779|gb|EEF37441.1| Polyadenylation factor subunit, putative [Ricinus communis]

 Score =  913 bits (2359), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 456/582 (78%), Positives = 506/582 (86%), Gaps = 19/582 (3%)

Query: 1   MSSITSEELNYLVFRYLQESGLLHSAFVLGYEAGINKCNIDGNLVPPRALITFVQKGLQY 60
           M++ITS ELNYLVFRYLQESG  HSAF LGYEAGINKC IDGN+VPP ALITFVQKG+QY
Sbjct: 1   MTTITSSELNYLVFRYLQESGFTHSAFALGYEAGINKCTIDGNMVPPGALITFVQKGIQY 60

Query: 61  LEMEANLSNSDVDMDEDFSFLQPMDLITKDVCELRQMVKEKKKNLNGDRDKENDVDRGHE 120
           LEMEANLSNSD D+DEDFSFLQP+DLITKDV ELRQM+K+KKKNL+ DR+KE + D+  +
Sbjct: 61  LEMEANLSNSDADVDEDFSFLQPLDLITKDVYELRQMIKDKKKNLHKDREKEKEKDKNKD 120

Query: 121 IEHGRVKEKERLDREKE--------RERDKERVENEKEPEKQHESHPDKEMLTVQEEKVN 172
            E  R  E+ER    ++         E+D+ERVE +KE EKQHE + D+E +  Q +K N
Sbjct: 121 KEFEREHERERTRIREKERQEREKESEKDRERVEKDKEREKQHEDNTDRETVADQADKNN 180

Query: 173 SKPE---------ENGVLQ--GEKGPEPMDIATTSASESFEIPNSDVTILEGHTSEVCAC 221
            K E         EN   +  G  GPEPMD++ TS S++ EIP+SDV ILEGHTSEVCAC
Sbjct: 181 VKHENIKHENVKHENVKHEENGTGGPEPMDVSVTSTSQACEIPSSDVMILEGHTSEVCAC 240

Query: 222 AWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLD 281
           AWSP GSLLASGSGDSTARIW IA+GTS  G QNGPLNVLVLKHVKGRTNEKSKDVTTLD
Sbjct: 241 AWSPTGSLLASGSGDSTARIWAIAEGTSRSGVQNGPLNVLVLKHVKGRTNEKSKDVTTLD 300

Query: 282 WNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIV 341
           WNGEGTLLATGSYDGQARIW+T+G+LK TLSKHKGPIFSLKWNKKGD+LLTGSCDKTAIV
Sbjct: 301 WNGEGTLLATGSYDGQARIWNTSGELKTTLSKHKGPIFSLKWNKKGDFLLTGSCDKTAIV 360

Query: 342 WDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEV 401
           WDVKTEEWKQQFEFHSGP LDVDWRNN SFATSSTDNMIYVC++G+NRP+KTFAGHQGEV
Sbjct: 361 WDVKTEEWKQQFEFHSGPILDVDWRNNTSFATSSTDNMIYVCRVGDNRPVKTFAGHQGEV 420

Query: 402 NCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQ 461
           NCVKWDPTGSLLASCSDD++AKIW+MKQDKYVHDLREHSKEIYTIRWSPTG GTNNPNQQ
Sbjct: 421 NCVKWDPTGSLLASCSDDISAKIWSMKQDKYVHDLREHSKEIYTIRWSPTGPGTNNPNQQ 480

Query: 462 LILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLK 521
           L+LASASFDSTVKLWDVELGKLL +L+GHR+PVYS+AFSP GEYLASGSLD+S++IWSLK
Sbjct: 481 LVLASASFDSTVKLWDVELGKLLCTLSGHRDPVYSVAFSPNGEYLASGSLDRSINIWSLK 540

Query: 522 EGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLDFRM 563
           E KIVKTYTG GGIFEVCWNKEGDKIAACFAN+TVCVLD RM
Sbjct: 541 EVKIVKTYTGQGGIFEVCWNKEGDKIAACFANNTVCVLDLRM 582

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356563556|ref|XP_003550027.1| PREDICTED: F-box-like/WD repeat-containing protein TBL1XR1-like [Glycine max]

 Score =  912 bits (2357), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 448/617 (72%), Positives = 505/617 (81%), Gaps = 57/617 (9%)

Query: 1   MSSITSEELNYLVFRYLQESGLLHSAFVLGYEAGINKCNIDGNLVPPRALITFVQKGLQY 60
           M+SI+S ELNYLV+RYLQESG  H+AF  GYEAGINKC+IDGNLVP  AL+TF+QKGLQY
Sbjct: 1   MASISSAELNYLVYRYLQESGFTHAAFTFGYEAGINKCSIDGNLVPSGALVTFIQKGLQY 60

Query: 61  LEMEANLSNSDVDMDEDFSFLQPMDLITKDVCELRQMVKEKKKNLNGD------------ 108
            EMEANLSN D D++EDFSFLQP+DLITKDV ELRQM+ E++K L  +            
Sbjct: 61  FEMEANLSNCDADLEEDFSFLQPLDLITKDVHELRQMISERRKKLQKERKKEFEKEHEGE 120

Query: 109 ---------RDKENDVD-----RGHEIEHGRVK-----EKERLDREKERERD-------- 141
                    R++E +V+     R  E+E  R +     EK+R +REKE E+D        
Sbjct: 121 RVRVREKDRREREKEVEKDRRERDKEVEKDRREREKEVEKDRREREKEVEKDRREKEKEV 180

Query: 142 --------------KERVENEKEPEKQHESHPDKEMLTVQEEKVNS-KPEENGVLQGEKG 186
                         +E+VEN+KE E+QH     ++M+   E++V   K EENG +    G
Sbjct: 181 EKERRERQKEVVKDREKVENDKEREQQHGDQTVRKMVIDHEDRVPVVKLEENGAV---GG 237

Query: 187 PEPMDIATTSASESFEIPNSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIAD 246
           PE MDI+TTS S+ FEIP+SDVTILEGHTSEVCACAWSP GSLLASGSGDSTARIWTIA+
Sbjct: 238 PESMDISTTSTSQLFEIPSSDVTILEGHTSEVCACAWSPTGSLLASGSGDSTARIWTIAE 297

Query: 247 GTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGD 306
           G    G+QN PLNVLVLKHV+G+TNEKSKDVTTLDWNGEGTLLATGSYDGQARIW+TNG+
Sbjct: 298 GRCKPGSQNSPLNVLVLKHVRGKTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWTTNGE 357

Query: 307 LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR 366
           LK TLSKHKGPIFSLKWNKKGDYLLTGSCD+TAIVWDVK EEWKQQFEFHSGPTLDVDWR
Sbjct: 358 LKSTLSKHKGPIFSLKWNKKGDYLLTGSCDQTAIVWDVKAEEWKQQFEFHSGPTLDVDWR 417

Query: 367 NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWN 426
           NNVSFATSSTDNMIYVCKIGE RPIKTFAGHQGEVNCVKWDP+GSLLASCSDD+TAKIW+
Sbjct: 418 NNVSFATSSTDNMIYVCKIGETRPIKTFAGHQGEVNCVKWDPSGSLLASCSDDITAKIWS 477

Query: 427 MKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYS 486
           MKQD Y+HDLREHSKEIYTIRWSPTG GTNNPN +L+LASASFDSTVKLWDVELGKL+YS
Sbjct: 478 MKQDTYLHDLREHSKEIYTIRWSPTGPGTNNPNHKLVLASASFDSTVKLWDVELGKLMYS 537

Query: 487 LNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDK 546
           L+GHR PVYS+AFSP G+YL SGSLD+SMHIWSL++GKIVKTYTGNGGIFEVCWNKEGDK
Sbjct: 538 LDGHRHPVYSVAFSPNGDYLVSGSLDRSMHIWSLRDGKIVKTYTGNGGIFEVCWNKEGDK 597

Query: 547 IAACFANHTVCVLDFRM 563
           IAACFAN+TVCVLDFRM
Sbjct: 598 IAACFANNTVCVLDFRM 614

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356511917|ref|XP_003524668.1| PREDICTED: F-box-like/WD repeat-containing protein TBL1XR1-like isoform 1 [Glycine max]

 Score =  909 bits (2349), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 446/610 (73%), Positives = 501/610 (82%), Gaps = 50/610 (8%)

Query: 1   MSSITSEELNYLVFRYLQESGLLHSAFVLGYEAGINKCNIDGNLVPPRALITFVQKGLQY 60
           M+SI+S ELNYLV+RYLQESG  H+AF  GYEAGINKC+IDGNLVP  AL+TFVQKGLQY
Sbjct: 1   MASISSAELNYLVYRYLQESGFTHAAFTFGYEAGINKCSIDGNLVPSGALVTFVQKGLQY 60

Query: 61  LEMEANLSNSDVDMDEDFSFLQPMDLITKDVCELRQMVKEKKKNLNGD------------ 108
            EMEANLSN D D++EDFSFLQP+DLITKDV ELRQM+ E++K L  +            
Sbjct: 61  FEMEANLSNCDADLEEDFSFLQPLDLITKDVHELRQMISERRKKLQKERKKEFEKEHEGE 120

Query: 109 --RDKENDV-----------------------DRGHEIEHGRVK-----EKERLDREKE- 137
             R +E D                        +R  E+E  R +     EK+R ++EKE 
Sbjct: 121 RVRVREKDRREREKEVEKERREREKEVEKDRREREKEVEKDRREREKEVEKDRREKEKEV 180

Query: 138 ----RERDKERVENEKEPEKQHESHPDKEMLTVQEEKVNSKPEENGVLQGEKGPEPMDIA 193
               RE++KE++EN+KE E+QH     +EM    E++V  K EENG +    GPEPMDI+
Sbjct: 181 EKDRREKEKEKIENDKEREQQHGDQTVREMFVDHEDRVPVKLEENGAV---GGPEPMDIS 237

Query: 194 TTSASESFEIPNSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGA 253
           TTS S+   IP+SDVTILEGHTSEVCACAWSP GSLLASGSGDSTARIWTIA+G    G+
Sbjct: 238 TTSTSQLCGIPSSDVTILEGHTSEVCACAWSPTGSLLASGSGDSTARIWTIAEGRCKPGS 297

Query: 254 QNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSK 313
           +NGPLNVLVLKHV+G+TNEKSKDVTTLDWNGEGTLLATGSYDGQARIW+TNG+LK TLSK
Sbjct: 298 ENGPLNVLVLKHVRGKTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWTTNGELKSTLSK 357

Query: 314 HKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFAT 373
           HKGPIFSLKWNKKGDYLLTGSCD+TAIVWDVK EEWKQQFEFHSGPTLDVDWRNNVSFAT
Sbjct: 358 HKGPIFSLKWNKKGDYLLTGSCDQTAIVWDVKAEEWKQQFEFHSGPTLDVDWRNNVSFAT 417

Query: 374 SSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYV 433
           SSTDNMI+VCKIGE  PIKTF GHQGEVNCVKWDPTGSLLASCSDD+TAKIW+MKQD Y+
Sbjct: 418 SSTDNMIHVCKIGETHPIKTFTGHQGEVNCVKWDPTGSLLASCSDDITAKIWSMKQDTYL 477

Query: 434 HDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREP 493
           HDLREHSKEIYTIRWSPTG GTNNPN +L+LASASFDSTVKLWDVELGKL+YSL+GHR P
Sbjct: 478 HDLREHSKEIYTIRWSPTGPGTNNPNHKLVLASASFDSTVKLWDVELGKLIYSLDGHRHP 537

Query: 494 VYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFAN 553
           VYS+AFSP G+YL SGSLD+SMHIWSL++GKIVKTYTGNGGIFEVCWNKEGDKIAACFAN
Sbjct: 538 VYSVAFSPNGDYLVSGSLDRSMHIWSLRDGKIVKTYTGNGGIFEVCWNKEGDKIAACFAN 597

Query: 554 HTVCVLDFRM 563
           +TVCVLDFRM
Sbjct: 598 NTVCVLDFRM 607

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224115052|ref|XP_002332225.1| predicted protein [Populus trichocarpa] gi|222831838|gb|EEE70315.1| predicted protein [Populus trichocarpa]

 Score =  885 bits (2288), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 437/563 (77%), Positives = 472/563 (83%), Gaps = 31/563 (5%)

Query: 1   MSSITSEELNYLVFRYLQESGLLHSAFVLGYEAGINKCNIDGNLVPPRALITFVQKGLQY 60
           M+SITS ELNYLVFRYLQESG  HSAFVLGYEAGINKC IDGN+VPP ALI+FVQKGLQY
Sbjct: 1   MTSITSVELNYLVFRYLQESGFTHSAFVLGYEAGINKCTIDGNMVPPGALISFVQKGLQY 60

Query: 61  LEMEANLSNSDVDMDEDFSFLQPMDLITKDVCELRQMVKEKKKNLNGDRDKENDVDRGHE 120
           LEMEANLSNSD D+DEDFSFLQP+DLITKDV ELRQ++KEKKKNL  D  +        +
Sbjct: 61  LEMEANLSNSDADVDEDFSFLQPLDLITKDVNELRQIIKEKKKNLRKDEKRRRRRKTKTK 120

Query: 121 IEHGRVKEKERLDREKERERDKERVENEKEPEKQHESHPDKEMLTVQEEKVNSKPEENGV 180
            +         L + ++ E                         TV+   V   P E G 
Sbjct: 121 TKTKTKIWSSMLSQCRDGEA------------------------TVKSHFVFLFPLEFG- 155

Query: 181 LQGEKGPEPMDIATTSASESFEIPNSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTAR 240
                 PEPMDI+T S S++ EIP+SDV ILEGHTSEVCACAWSP GSLLASGSGDSTAR
Sbjct: 156 ------PEPMDISTASTSQTCEIPSSDVMILEGHTSEVCACAWSPTGSLLASGSGDSTAR 209

Query: 241 IWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARI 300
           IWTIA+GTS   AQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARI
Sbjct: 210 IWTIAEGTSRSVAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARI 269

Query: 301 WSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPT 360
           WST+G+LK TLSKHKGPIF+LKWNKKGDYLLTGSCDKTAIVWDV+ EEWKQQFEFHSGPT
Sbjct: 270 WSTDGELKTTLSKHKGPIFTLKWNKKGDYLLTGSCDKTAIVWDVRAEEWKQQFEFHSGPT 329

Query: 361 LDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDV 420
           LDVDWRNNVSFATSSTDNMIYVCK+GE RPIKTFAGHQGEVNCVKWDPTGS LASCSDD+
Sbjct: 330 LDVDWRNNVSFATSSTDNMIYVCKVGETRPIKTFAGHQGEVNCVKWDPTGSWLASCSDDI 389

Query: 421 TAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL 480
           +AKIW+MKQ+KYVHDLREHSKEIYTIRWSPTG GTNNPNQ L+LASASFDSTVKLWDVE 
Sbjct: 390 SAKIWSMKQEKYVHDLREHSKEIYTIRWSPTGPGTNNPNQPLVLASASFDSTVKLWDVEF 449

Query: 481 GKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCW 540
           GKLL SLNGHREPVYS+AFSP GEYLASGSLD+ ++IWSL+EGKIVKTY GNGGIFEVCW
Sbjct: 450 GKLLCSLNGHREPVYSVAFSPNGEYLASGSLDRCINIWSLREGKIVKTYAGNGGIFEVCW 509

Query: 541 NKEGDKIAACFANHTVCVLDFRM 563
           NKEGDKIAACFAN+TVCVLDFRM
Sbjct: 510 NKEGDKIAACFANNTVCVLDFRM 532

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356541727|ref|XP_003539325.1| PREDICTED: F-box-like/WD repeat-containing protein ebi-like [Glycine max]

 Score =  877 bits (2266), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 428/563 (76%), Positives = 478/563 (84%), Gaps = 5/563 (0%)

Query: 1   MSSITSEELNYLVFRYLQESGLLHSAFVLGYEAGINKCNIDGNLVPPRALITFVQKGLQY 60
           M+S+TS ELN LVFRY QESG  H+AF  G EA INK  IDG L+PP ALIT VQKGLQY
Sbjct: 1   MTSVTSVELNLLVFRYFQESGFTHAAFAFGNEASINKSPIDGKLIPPGALITLVQKGLQY 60

Query: 61  LEMEANLSNSDVDMDEDFSFLQPMDLITKDVCELRQMVKEKKKNLNGDRDKENDVDRGHE 120
           LEMEANLSN D D+DEDFSFLQP+DLITKDV ELR+MV E++K L  +R+KE++  + +E
Sbjct: 61  LEMEANLSNCDADLDEDFSFLQPLDLITKDVHELRKMVNERRKILQKNRNKESE--KENE 118

Query: 121 IEHGRVKEKERLDREKERERDKERVENEKEPEKQHESHPDKEMLTVQEEKVNSKPEENGV 180
              G +KEK R +REKE ERD E+ EN KE E+QH +   +EM+  QE+ V  K  EN  
Sbjct: 119 GGRGWLKEKGRHEREKECERDGEKAENLKELEQQHYNQSCREMVIDQEDLVTVKHAENKA 178

Query: 181 LQGEKGPEPMDIATTSASESFEIPNSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTAR 240
                G EPMD++TTS  +  +IP SDV +LEGHTSEVCACAWSP GSLLASGSGDSTAR
Sbjct: 179 F---GGTEPMDVSTTSTLQPCQIPRSDVIVLEGHTSEVCACAWSPTGSLLASGSGDSTAR 235

Query: 241 IWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARI 300
           IWTIA+G       NGP NVLVLKHV+G+TNEKS DVTTLDWNGEGTLLATGSYDGQARI
Sbjct: 236 IWTIAEGRCKSALLNGPPNVLVLKHVRGKTNEKSNDVTTLDWNGEGTLLATGSYDGQARI 295

Query: 301 WSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPT 360
           W+TNG+LK TLSKHKGPIFSLKWNKKGDY+LTGSCD+TAIVWDVK EEWKQQFEFHSG T
Sbjct: 296 WTTNGELKSTLSKHKGPIFSLKWNKKGDYILTGSCDQTAIVWDVKAEEWKQQFEFHSGWT 355

Query: 361 LDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDV 420
           LDVDWRNNVSFATSSTD  I+VCKIGEN PI+TF GHQ EVNC+KWDPTGSLLASCSDD+
Sbjct: 356 LDVDWRNNVSFATSSTDTKIHVCKIGENLPIRTFVGHQSEVNCIKWDPTGSLLASCSDDM 415

Query: 421 TAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL 480
           TAKIW+MKQDKY+H+ REHSKEIYTIRWSPTG GTNNPN+ L+LASASFDSTVKLWDVEL
Sbjct: 416 TAKIWSMKQDKYLHEFREHSKEIYTIRWSPTGPGTNNPNKNLVLASASFDSTVKLWDVEL 475

Query: 481 GKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCW 540
           GKLLYSLNGHR+ VYS+AFSP GEY+ASGS D+SM IWSLKEGKIVKTYTG+GGIFEVCW
Sbjct: 476 GKLLYSLNGHRDRVYSVAFSPNGEYIASGSPDRSMLIWSLKEGKIVKTYTGDGGIFEVCW 535

Query: 541 NKEGDKIAACFANHTVCVLDFRM 563
           NKEGDKIAACFAN+TVCVLDFRM
Sbjct: 536 NKEGDKIAACFANNTVCVLDFRM 558

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224081793|ref|XP_002306492.1| predicted protein [Populus trichocarpa] gi|222855941|gb|EEE93488.1| predicted protein [Populus trichocarpa]

 Score =  866 bits (2237), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 427/563 (75%), Positives = 461/563 (81%), Gaps = 46/563 (8%)

Query: 1   MSSITSEELNYLVFRYLQESGLLHSAFVLGYEAGINKCNIDGNLVPPRALITFVQKGLQY 60
           M+SITS ELNYLVFRYLQESG  HSAF LGYE GINKC IDGN++PP ALITFVQKGLQY
Sbjct: 1   MTSITSVELNYLVFRYLQESGFTHSAFALGYEGGINKCTIDGNMIPPGALITFVQKGLQY 60

Query: 61  LEMEANLSNSDVDMDEDFSFLQPMDLITKDVCELRQMVKEKKKNLNGDRDKENDVDRGHE 120
           LEMEANLSNSD D+DEDFSFLQP+DLITKDV EL Q + ++KK       ++       +
Sbjct: 61  LEMEANLSNSDADVDEDFSFLQPLDLITKDVNEL-QQIIKEKKKNLHKDREKEKEKEKDK 119

Query: 121 IEHGRVKEKERLDREKERERDKERVENEKEPEKQHESHPDKEMLTVQEEKVNSKPEENGV 180
                  + +  +RE ERE                                         
Sbjct: 120 DRDKDKDKDKEFEREHEREL---------------------------------------- 139

Query: 181 LQGEKGPEPMDIATTSASESFEIPNSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTAR 240
                GPEPMDI+ TS S++ EIP+SDV ILEGHTSEVCACAWSP G LLASGSGDSTAR
Sbjct: 140 -----GPEPMDISITSTSQTCEIPSSDVMILEGHTSEVCACAWSPIGQLLASGSGDSTAR 194

Query: 241 IWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARI 300
           IWTI +GTS  G QN PLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARI
Sbjct: 195 IWTITEGTSRSGVQNDPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARI 254

Query: 301 WSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPT 360
           WST+G+LK TLSKHKGPIF+LKWNKKGDYLLTGSCDKTAIVWDV+ EEWKQQFEFHSGPT
Sbjct: 255 WSTDGELKTTLSKHKGPIFTLKWNKKGDYLLTGSCDKTAIVWDVRAEEWKQQFEFHSGPT 314

Query: 361 LDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDV 420
           LDVDWRNNVSFATSSTDNMIYVCK+GE RPIK+FAGHQGEVNCVKWDPTGSLLASCSDD+
Sbjct: 315 LDVDWRNNVSFATSSTDNMIYVCKVGETRPIKSFAGHQGEVNCVKWDPTGSLLASCSDDI 374

Query: 421 TAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL 480
           +AKIW+MKQDKYVHDLREHSKEIYTIRWSPTG GTNNPNQQL+LASASFDSTVKLWDVE 
Sbjct: 375 SAKIWSMKQDKYVHDLREHSKEIYTIRWSPTGPGTNNPNQQLVLASASFDSTVKLWDVEF 434

Query: 481 GKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCW 540
           GKLL SLNGHREPVYS+AFSP GEYLASGSLD+ ++IWSLKEGKIVKTYTGNGGIFEVCW
Sbjct: 435 GKLLSSLNGHREPVYSVAFSPNGEYLASGSLDRCINIWSLKEGKIVKTYTGNGGIFEVCW 494

Query: 541 NKEGDKIAACFANHTVCVLDFRM 563
           NKEGDKIAACFAN+TVCVLDFRM
Sbjct: 495 NKEGDKIAACFANNTVCVLDFRM 517

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297797649|ref|XP_002866709.1| WD-40 repeat family protein [Arabidopsis lyrata subsp. lyrata] gi|297312544|gb|EFH42968.1| WD-40 repeat family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  832 bits (2150), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 423/620 (68%), Positives = 485/620 (78%), Gaps = 60/620 (9%)

Query: 1   MSSITSEELNYLVFRYLQESGLLHSAFVLGYEAGINKCNIDGNLVPPRALITFVQKGLQY 60
           MSS+TS ELN+LVFRYLQESG  HSAF LGYEAGINK NIDGN+VPP ALI FVQKGLQY
Sbjct: 1   MSSLTSVELNFLVFRYLQESGFTHSAFTLGYEAGINKSNIDGNMVPPGALIKFVQKGLQY 60

Query: 61  LEMEANLSNSDVDMDEDFSFLQPMDLITKDVCELRQMVKEKKKNLNG-----DRDKEND- 114
           +EMEANLSNS+VD+DEDFSF QP+DLI+KDV EL+ M++EKK+         DR KEND 
Sbjct: 61  MEMEANLSNSEVDIDEDFSFFQPLDLISKDVKELQDMLREKKRKERDREKERDRSKENDK 120

Query: 115 -VDRGHEIEHGRVKEKERLDREK------------------------------------E 137
            V+R HE +  R KEK+R +++K                                    E
Sbjct: 121 EVEREHEGDRNRAKEKDRHEKQKEREREREKLEREKEREREKIEREKEREREKMEREIFE 180

Query: 138 RERDKERVENEKEPEKQ-----------HESH---PDKEMLTVQEEKVNSKPEENGVLQG 183
           RE+D+ ++E E+E E++           HE      D+EM+  Q +K N+   E+G    
Sbjct: 181 REKDRLKLEKEREMEREREREKIEREKCHEKQLGDADREMVIDQTDKENAGDLEHGR--- 237

Query: 184 EKGPEPMDIATTSASESFEIPNSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWT 243
             G EPMDI  T  S++  IP+SDV ILEGHTSEVCACAWSP+ SLLASGSGD+TARIW+
Sbjct: 238 STGAEPMDIVMTPTSQTSHIPSSDVRILEGHTSEVCACAWSPSASLLASGSGDATARIWS 297

Query: 244 IADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWST 303
           I +G+         +N L+LKH KG++NEKSKDVTTLDWNGEGTLLATGS DGQARIW+ 
Sbjct: 298 IPEGSFRSVHTGRNINALILKHAKGKSNEKSKDVTTLDWNGEGTLLATGSCDGQARIWNL 357

Query: 304 NGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDV 363
           NGDL  TLSKHKGPIFSLKWNKKGDYLLTGS D+TA+VWDVK EEWKQQFEFHSGPTLDV
Sbjct: 358 NGDLISTLSKHKGPIFSLKWNKKGDYLLTGSVDRTAVVWDVKAEEWKQQFEFHSGPTLDV 417

Query: 364 DWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAK 423
           DWRNNVSFATSSTD+MIY+CKIGE RP K FAGHQGEVNCVKWDPTGSLLASCSDD TAK
Sbjct: 418 DWRNNVSFATSSTDSMIYLCKIGETRPAKIFAGHQGEVNCVKWDPTGSLLASCSDDSTAK 477

Query: 424 IWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKL 483
           IWN+KQ+ +VHDLREH+KEIYTIRWSPTG GTNNPN+QL LASASFDS+VKLWD ELGK+
Sbjct: 478 IWNIKQNTFVHDLREHTKEIYTIRWSPTGPGTNNPNKQLTLASASFDSSVKLWDAELGKM 537

Query: 484 LYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKE 543
           L S NGHREPVYSLAFSP GEY+ASGSLD+S+HIWS+KEGKIVKTYTGNGGIFEVCWNKE
Sbjct: 538 LCSFNGHREPVYSLAFSPNGEYIASGSLDRSIHIWSIKEGKIVKTYTGNGGIFEVCWNKE 597

Query: 544 GDKIAACFANHTVCVLDFRM 563
           G+KIAACFA+++VCVLDFRM
Sbjct: 598 GNKIAACFADNSVCVLDFRM 617

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	563
TAIR|locus:2158232	613	HOS15 "high expression of osmo	0.719	0.660	0.756	2.1e-173
UNIPROTKB|B7TCI5	528	TBL1X "Transducin beta-like 1"	0.678	0.723	0.577	4.7e-146
MGI|MGI:1336172	527	Tbl1x "transducin (beta)-like	0.678	0.724	0.575	7.7e-146
RGD|1563868	527	Tbl1x "transducin (beta)-like	0.678	0.724	0.575	7.7e-146
UNIPROTKB|E1BV27	523	TBL1X "Uncharacterized protein	0.678	0.730	0.567	1.3e-145
MGI|MGI:2441730	514	Tbl1xr1 "transducin (beta)-lik	0.630	0.690	0.598	1.4e-144
UNIPROTKB|Q9BZK7	514	TBL1XR1 "F-box-like/WD repeat-	0.630	0.690	0.598	1.8e-144
RGD|1560053	514	Tbl1xr1 "transducin (beta)-lik	0.630	0.690	0.598	3e-144
UNIPROTKB|C3UJQ7	524	TBL1Y "Transducin (Beta)-like	0.682	0.732	0.567	3e-144
ZFIN|ZDB-GENE-040426-1192	511	tbl1xr1 "transducin (beta)-lik	0.630	0.694	0.597	6.1e-144

TAIR|locus:2158232 HOS15 "high expression of osmotically responsive genes 15" [Arabidopsis thaliana (taxid:3702)]

 Score = 1685 (598.2 bits), Expect = 2.1e-173, P = 2.1e-173
 Identities = 314/415 (75%), Positives = 345/415 (83%)

Query:   152 EKQHESH---PDKEMLTVQEEKVNSKPEENGVLQGEKGPEPMDIATTSASESFEIPNSDV 208
             EK HE      D+EM+  Q +K     E  G   G  G EPMDI  T  S++  IPNSDV
Sbjct:   206 EKSHEKQLGDADREMVIDQTDK-----EIAG--DGSTGAEPMDIVMTPTSQTSHIPNSDV 258

Query:   209 TILEGHTSEVCACAWSPXXXXXXXXXXDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKG 268
              ILEGHTSEVCACAWSP          D+TARIW+I +G+         +N L+LKH KG
Sbjct:   259 RILEGHTSEVCACAWSPSASLLASGSGDATARIWSIPEGSFKAVHTGRNINALILKHAKG 318

Query:   269 RTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGD 328
             ++NEKSKDVTTLDWNGEGTLLATGS DGQARIW+ NG+L  TLSKHKGPIFSLKWNKKGD
Sbjct:   319 KSNEKSKDVTTLDWNGEGTLLATGSCDGQARIWTLNGELISTLSKHKGPIFSLKWNKKGD 378

Query:   329 YLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGEN 388
             YLLTGS D+TA+VWDVK EEWKQQFEFHSGPTLDVDWRNNVSFATSSTD+MIY+CKIGE 
Sbjct:   379 YLLTGSVDRTAVVWDVKAEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDSMIYLCKIGET 438

Query:   389 RPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRW 448
             RP KTF GHQGEVNCVKWDPTGSLLASCSDD TAKIWN+KQ  +VHDLREH+KEIYTIRW
Sbjct:   439 RPAKTFTGHQGEVNCVKWDPTGSLLASCSDDSTAKIWNIKQSTFVHDLREHTKEIYTIRW 498

Query:   449 SPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLAS 508
             SPTG GTNNPN+QL LASASFDSTVKLWD ELGK+L S NGHREPVYSLAFSP GEY+AS
Sbjct:   499 SPTGPGTNNPNKQLTLASASFDSTVKLWDAELGKMLCSFNGHREPVYSLAFSPNGEYIAS 558

Query:   509 GSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLDFRM 563
             GSLDKS+HIWS+KEGKIVKTYTGNGGIFEVCWNKEG+KIAACFA+++VCVLDFRM
Sbjct:   559 GSLDKSIHIWSIKEGKIVKTYTGNGGIFEVCWNKEGNKIAACFADNSVCVLDFRM 613

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

GO:0009409 "response to cold" evidence=IMP

GO:0016575 "histone deacetylation" evidence=IMP

GO:0000956 "nuclear-transcribed mRNA catabolic process" evidence=RCA

GO:0006342 "chromatin silencing" evidence=RCA

GO:0009640 "photomorphogenesis" evidence=RCA

GO:0010388 "cullin deneddylation" evidence=RCA

GO:0016567 "protein ubiquitination" evidence=RCA

GO:0016571 "histone methylation" evidence=RCA

GO:0016572 "histone phosphorylation" evidence=RCA

GO:0016579 "protein deubiquitination" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

UNIPROTKB|B7TCI5 TBL1X "Transducin beta-like 1" [Bos taurus (taxid:9913)]

 Score = 1215 (432.8 bits), Expect = 4.7e-146, Sum P(2) = 4.7e-146
 Identities = 230/398 (57%), Positives = 284/398 (71%)

Query:   168 EEKVNSKPEENGVLQGEKGPEPMDIATTSASESFEIPNSDVTILEGHTSEVCACAWSPXX 227
             E  VN   EENG        +PM+I         EIP S  T+L GH SEV  CAW+P  
Sbjct:   143 EATVNG--EENGAHAINNHSKPMEI-----DGDVEIPPSKATVLRGHESEVFICAWNPVS 195

Query:   228 XXXXXXXXDSTARIWTIADGTSNGGAQNGPLNVLVLKH-VK--GRTNEKSKDVTTLDWNG 284
                     DSTARIW + +  SNGG+       LVL+H ++  G     +KDVT+LDWN 
Sbjct:   196 DLLASGSGDSTARIWNLNEN-SNGGSTQ-----LVLRHCIREGGHDVPSNKDVTSLDWNS 249

Query:   285 EGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDV 344
             +GTLLATGSYDG ARIW+ +G+L  TL +HKGPIF+LKWNKKG+Y+L+   DKT I+WD 
Sbjct:   250 DGTLLATGSYDGFARIWTEDGNLASTLGQHKGPIFALKWNKKGNYILSAGVDKTTIIWDA 309

Query:   345 KTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCV 404
              T E KQQF FHS P LDVDW+NN +FA+ STD  I+VC++G +RP+KTF GH  EVN +
Sbjct:   310 HTGEAKQQFPFHSAPALDVDWQNNTTFASCSTDMCIHVCRLGCDRPVKTFQGHTNEVNAI 369

Query:   405 KWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLIL 464
             KWDP+G LLASCSDD+T KIW+MKQD  VHDL+ HSKEIYTI+WSPTG  T+NPN  ++L
Sbjct:   370 KWDPSGMLLASCSDDMTLKIWSMKQDTCVHDLQAHSKEIYTIKWSPTGPATSNPNSSIML 429

Query:   465 ASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGK 524
             ASASFDSTV+LWDVE G  L++L  H+EPVYS+AFSP G+YLASGS DK +HIW+ + G 
Sbjct:   430 ASASFDSTVRLWDVERGVCLHTLTKHQEPVYSVAFSPDGKYLASGSFDKCVHIWNTQSGS 489

Query:   525 IVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLDFR 562
             +V +Y G GGIFEVCWN  GDK+ A  ++ +VCVLD R
Sbjct:   490 LVHSYRGTGGIFEVCWNARGDKVGASASDGSVCVLDLR 527

GO:0006508 "proteolysis" evidence=ISS

GO:0007605 "sensory perception of sound" evidence=ISS

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISS

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=ISS

GO:0060070 "canonical Wnt receptor signaling pathway" evidence=ISS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISS

GO:0003714 "transcription corepressor activity" evidence=ISS

GO:0008013 "beta-catenin binding" evidence=ISS

GO:0042393 "histone binding" evidence=ISS

GO:0005876 "spindle microtubule" evidence=ISS

GO:0017053 "transcriptional repressor complex" evidence=ISS

GO:0045444 "fat cell differentiation" evidence=IEA

GO:0044212 "transcription regulatory region DNA binding" evidence=IEA

GO:0043627 "response to estrogen stimulus" evidence=IEA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0005667 "transcription factor complex" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

MGI|MGI:1336172 Tbl1x "transducin (beta)-like 1 X-linked" [Mus musculus (taxid:10090)]

 Score = 1213 (432.1 bits), Expect = 7.7e-146, Sum P(2) = 7.7e-146
 Identities = 229/398 (57%), Positives = 284/398 (71%)

Query:   168 EEKVNSKPEENGVLQGEKGPEPMDIATTSASESFEIPNSDVTILEGHTSEVCACAWSPXX 227
             E  VN   EENG        +PM+I         EIP S  T+L GH SEV  CAW+P  
Sbjct:   142 EATVNG--EENGAHAINNHSKPMEI-----DGDVEIPPSKATVLRGHESEVFICAWNPVS 194

Query:   228 XXXXXXXXDSTARIWTIADGTSNGGAQNGPLNVLVLKH-VK--GRTNEKSKDVTTLDWNG 284
                     DSTARIW + +  SNGG+       LVL+H ++  G     +KDVT+LDWN 
Sbjct:   195 DLLASGSGDSTARIWNLNEN-SNGGSTQ-----LVLRHCIREGGHDVPSNKDVTSLDWNS 248

Query:   285 EGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDV 344
             +GTLLATGSYDG ARIW+ +G+L  TL +HKGPIF+LKWNKKG+Y+L+   DKT I+WD 
Sbjct:   249 DGTLLATGSYDGFARIWTEDGNLASTLGQHKGPIFALKWNKKGNYILSAGVDKTTIIWDA 308

Query:   345 KTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCV 404
              T E KQQF FHS P LDVDW+NN +FA+ STD  I+VC++G +RP+KTF GH  EVN +
Sbjct:   309 HTGEAKQQFPFHSAPALDVDWQNNTTFASCSTDMCIHVCRLGCDRPVKTFQGHTNEVNAI 368

Query:   405 KWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLIL 464
             KWDP+G LLASCSDD+T KIW+MKQD  VHDL+ HSKEIYTI+WSPTG  T+NPN  ++L
Sbjct:   369 KWDPSGMLLASCSDDMTLKIWSMKQDACVHDLQAHSKEIYTIKWSPTGPATSNPNSNIML 428

Query:   465 ASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGK 524
             ASASFDSTV+LWDVE G  +++L  H+EPVYS+AFSP G+YLASGS DK +HIW+ + G 
Sbjct:   429 ASASFDSTVRLWDVERGVCIHTLTKHQEPVYSVAFSPDGKYLASGSFDKCVHIWNTQSGS 488

Query:   525 IVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLDFR 562
             +V +Y G GGIFEVCWN  GDK+ A  ++ +VCVLD R
Sbjct:   489 LVHSYRGTGGIFEVCWNARGDKVGASASDGSVCVLDLR 526

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISO

GO:0003677 "DNA binding" evidence=IDA

GO:0003682 "chromatin binding" evidence=IDA

GO:0003714 "transcription corepressor activity" evidence=ISO;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=ISO

GO:0005667 "transcription factor complex" evidence=IDA

GO:0005876 "spindle microtubule" evidence=ISO

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IGI

GO:0006508 "proteolysis" evidence=ISO

GO:0007605 "sensory perception of sound" evidence=ISO

GO:0008013 "beta-catenin binding" evidence=ISO

GO:0008022 "protein C-terminus binding" evidence=ISO

GO:0008134 "transcription factor binding" evidence=ISO

GO:0017053 "transcriptional repressor complex" evidence=ISO

GO:0019904 "protein domain specific binding" evidence=ISO

GO:0042393 "histone binding" evidence=ISO

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=IMP

GO:0043627 "response to estrogen stimulus" evidence=IMP

GO:0044212 "transcription regulatory region DNA binding" evidence=ISO;IDA

GO:0045444 "fat cell differentiation" evidence=IMP

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISO

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=ISO;IMP

GO:0048545 "response to steroid hormone stimulus" evidence=IMP

GO:0060070 "canonical Wnt receptor signaling pathway" evidence=ISO

RGD|1563868 Tbl1x "transducin (beta)-like 1 X-linked" [Rattus norvegicus (taxid:10116)]

 Score = 1213 (432.1 bits), Expect = 7.7e-146, Sum P(2) = 7.7e-146
 Identities = 229/398 (57%), Positives = 284/398 (71%)

Query:   168 EEKVNSKPEENGVLQGEKGPEPMDIATTSASESFEIPNSDVTILEGHTSEVCACAWSPXX 227
             E  VN   EENG        +PM+I         EIP S  T+L GH SEV  CAW+P  
Sbjct:   142 EATVNG--EENGAHAINNHSKPMEI-----DGDVEIPPSKATVLRGHESEVFICAWNPVS 194

Query:   228 XXXXXXXXDSTARIWTIADGTSNGGAQNGPLNVLVLKH-VK--GRTNEKSKDVTTLDWNG 284
                     DSTARIW + +  SNGG+       LVL+H ++  G     +KDVT+LDWN 
Sbjct:   195 DLLASGSGDSTARIWNLNEN-SNGGSTQ-----LVLRHCIREGGHDVPSNKDVTSLDWNS 248

Query:   285 EGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDV 344
             +GTLLATGSYDG ARIW+ +G+L  TL +HKGPIF+LKWNKKG+Y+L+   DKT I+WD 
Sbjct:   249 DGTLLATGSYDGFARIWTEDGNLASTLGQHKGPIFALKWNKKGNYILSAGVDKTTIIWDA 308

Query:   345 KTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCV 404
              T E KQQF FHS P LDVDW+NN +FA+ STD  I+VC++G +RP+KTF GH  EVN +
Sbjct:   309 HTGEAKQQFPFHSAPALDVDWQNNTTFASCSTDMCIHVCRLGCDRPVKTFQGHTNEVNAI 368

Query:   405 KWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLIL 464
             KWDP+G LLASCSDD+T KIW+MKQD  VHDL+ HSKEIYTI+WSPTG  T+NPN  ++L
Sbjct:   369 KWDPSGMLLASCSDDMTLKIWSMKQDACVHDLQAHSKEIYTIKWSPTGPATSNPNSNIML 428

Query:   465 ASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGK 524
             ASASFDSTV+LWDVE G  +++L  H+EPVYS+AFSP G+YLASGS DK +HIW+ + G 
Sbjct:   429 ASASFDSTVRLWDVERGVCIHTLTKHQEPVYSVAFSPDGKYLASGSFDKCVHIWNTQSGS 488

Query:   525 IVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLDFR 562
             +V +Y G GGIFEVCWN  GDK+ A  ++ +VCVLD R
Sbjct:   489 LVHSYRGTGGIFEVCWNARGDKVGASASDGSVCVLDLR 526

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISO

GO:0003674 "molecular_function" evidence=ND

GO:0003677 "DNA binding" evidence=ISO

GO:0003682 "chromatin binding" evidence=IEA;ISO

GO:0003714 "transcription corepressor activity" evidence=IEA;ISO

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=ISO

GO:0005667 "transcription factor complex" evidence=IEA;ISO

GO:0005876 "spindle microtubule" evidence=ISO

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=ISO

GO:0006508 "proteolysis" evidence=ISO

GO:0007605 "sensory perception of sound" evidence=ISO

GO:0008013 "beta-catenin binding" evidence=ISO

GO:0008022 "protein C-terminus binding" evidence=ISO

GO:0008134 "transcription factor binding" evidence=ISO

GO:0008150 "biological_process" evidence=ND

GO:0017053 "transcriptional repressor complex" evidence=ISO

GO:0019904 "protein domain specific binding" evidence=ISO

GO:0042393 "histone binding" evidence=ISO

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA;ISO

GO:0043627 "response to estrogen stimulus" evidence=IEA;ISO

GO:0044212 "transcription regulatory region DNA binding" evidence=IEA;ISO

GO:0045444 "fat cell differentiation" evidence=IEA;ISO

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA;ISO

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISO

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA;ISO

GO:0048545 "response to steroid hormone stimulus" evidence=ISO

GO:0060070 "canonical Wnt receptor signaling pathway" evidence=ISO

GO:0000118 "histone deacetylase complex" evidence=ISO

UNIPROTKB|E1BV27 TBL1X "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 1211 (431.4 bits), Expect = 1.3e-145, Sum P(2) = 1.3e-145
 Identities = 226/398 (56%), Positives = 285/398 (71%)

Query:   168 EEKVNSKPEENGVLQGEKGPEPMDIATTSASESFEIPNSDVTILEGHTSEVCACAWSPXX 227
             E  VN   EENG        +PM+I         EIP +  T+L GH SEV  CAW+P  
Sbjct:   138 EATVNG--EENGAHAINNHSKPMEI-----DGDVEIPPNKATVLRGHESEVFICAWNPVS 190

Query:   228 XXXXXXXXDSTARIWTIADGTSNGGAQNGPLNVLVLKH-VK--GRTNEKSKDVTTLDWNG 284
                     DSTARIW + + +++G  Q      LVL+H ++  G     +KDVT+LDWN 
Sbjct:   191 DLLASGSGDSTARIWNLNENSNSGSTQ------LVLRHCIREGGHDVPSNKDVTSLDWNS 244

Query:   285 EGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDV 344
             +GTLLATGSYDG ARIW+ +G+L  TL +HKGPIF+LKWNKKG+Y+L+   DKT I+WD 
Sbjct:   245 DGTLLATGSYDGFARIWTEDGNLASTLGQHKGPIFALKWNKKGNYILSAGVDKTTIIWDA 304

Query:   345 KTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCV 404
              T E KQQF FHS P LDVDW+NN +FA+ STD  I+VC++G +RP+KTF GH  EVN +
Sbjct:   305 HTGEAKQQFPFHSAPALDVDWQNNTTFASCSTDMCIHVCRLGCDRPVKTFQGHTNEVNAI 364

Query:   405 KWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLIL 464
             KWDP+G LLASCSDD+T KIW+MKQD  VHDL+ HSKEIYTI+WSPTG GT+NPN  ++L
Sbjct:   365 KWDPSGMLLASCSDDMTLKIWSMKQDTCVHDLQAHSKEIYTIKWSPTGPGTSNPNSNIML 424

Query:   465 ASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGK 524
             ASASFDSTV+LWDV+ G  +++L  H+EPVYS+AFSP G+YLASGS DK +HIW+ + G 
Sbjct:   425 ASASFDSTVRLWDVDRGVCIHTLTKHQEPVYSVAFSPDGKYLASGSFDKCVHIWNTQSGT 484

Query:   525 IVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLDFR 562
             +V +Y G GGIFEVCWN  GDK+ A  ++ +VCVLD R
Sbjct:   485 LVHSYRGTGGIFEVCWNARGDKVGASASDGSVCVLDLR 522

GO:0003682 "chromatin binding" evidence=IEA

GO:0003714 "transcription corepressor activity" evidence=IEA

GO:0005667 "transcription factor complex" evidence=IEA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0043627 "response to estrogen stimulus" evidence=IEA

GO:0044212 "transcription regulatory region DNA binding" evidence=IEA

GO:0045444 "fat cell differentiation" evidence=IEA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

MGI|MGI:2441730 Tbl1xr1 "transducin (beta)-like 1X-linked receptor 1" [Mus musculus (taxid:10090)]

 Score = 1206 (429.6 bits), Expect = 1.4e-144, Sum P(2) = 1.4e-144
 Identities = 218/364 (59%), Positives = 276/364 (75%)

Query:   202 EIPNSDVTILEGHTSEVCACAWSPXXXXXXXXXXDSTARIWTIADGTSNGGAQNGPLNVL 261
             EIP++   +L GH SEV  CAW+P          DSTARIW +++ +++G  Q      L
Sbjct:   156 EIPSNKAVVLRGHESEVFICAWNPVSDLLASGSGDSTARIWNLSENSTSGPTQ------L 209

Query:   262 VLKH-VK--GRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPI 318
             VL+H ++  G+    +KDVT+LDWN EGTLLATGSYDG ARIW+ +G+L  TL +HKGPI
Sbjct:   210 VLRHCIREGGQDVPSNKDVTSLDWNSEGTLLATGSYDGFARIWTKDGNLASTLGQHKGPI 269

Query:   319 FSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDN 378
             F+LKWNKKG+++L+   DKT I+WD  T E KQQF FHS P LDVDW++N +FA+ STD 
Sbjct:   270 FALKWNKKGNFILSAGVDKTTIIWDAHTGEAKQQFPFHSAPALDVDWQSNNTFASCSTDM 329

Query:   379 MIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLRE 438
              I+VCK+G++RPIKTF GH  EVN +KWDPTG+LLASCSDD+T KIW+MKQD  VHDL+ 
Sbjct:   330 CIHVCKLGQDRPIKTFQGHTNEVNAIKWDPTGNLLASCSDDMTLKIWSMKQDNCVHDLQA 389

Query:   439 HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLA 498
             H+KEIYTI+WSPTG GTNNPN  L+LASASFDSTV+LWDV+ G  +++L  H+EPVYS+A
Sbjct:   390 HNKEIYTIKWSPTGPGTNNPNANLMLASASFDSTVRLWDVDRGICIHTLTKHQEPVYSVA 449

Query:   499 FSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCV 558
             FSP G YLASGS DK +HIW+ + G +V +Y G GGIFEVCWN  GDK+ A  ++ +VCV
Sbjct:   450 FSPDGRYLASGSFDKCVHIWNTQTGALVHSYRGTGGIFEVCWNAAGDKVGASASDGSVCV 509

Query:   559 LDFR 562
             LD R
Sbjct:   510 LDLR 513

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISO

GO:0003677 "DNA binding" evidence=IDA

GO:0003714 "transcription corepressor activity" evidence=ISO;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=ISO;IC

GO:0005876 "spindle microtubule" evidence=ISO

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008013 "beta-catenin binding" evidence=ISO

GO:0016568 "chromatin modification" evidence=IEA

GO:0017053 "transcriptional repressor complex" evidence=ISO

GO:0042393 "histone binding" evidence=ISO

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=IMP

GO:0044212 "transcription regulatory region DNA binding" evidence=ISO;IDA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISO

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=ISO;IMP

GO:0047485 "protein N-terminus binding" evidence=ISO

GO:0060070 "canonical Wnt receptor signaling pathway" evidence=ISO

UNIPROTKB|Q9BZK7 TBL1XR1 "F-box-like/WD repeat-containing protein TBL1XR1" [Homo sapiens (taxid:9606)]

 Score = 1205 (429.2 bits), Expect = 1.8e-144, Sum P(2) = 1.8e-144
 Identities = 218/364 (59%), Positives = 275/364 (75%)

Query:   202 EIPNSDVTILEGHTSEVCACAWSPXXXXXXXXXXDSTARIWTIADGTSNGGAQNGPLNVL 261
             EIP +   +L GH SEV  CAW+P          DSTARIW +++ +++G  Q      L
Sbjct:   156 EIPPNKAVVLRGHESEVFICAWNPVSDLLASGSGDSTARIWNLSENSTSGSTQ------L 209

Query:   262 VLKH-VK--GRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPI 318
             VL+H ++  G+    +KDVT+LDWN EGTLLATGSYDG ARIW+ +G+L  TL +HKGPI
Sbjct:   210 VLRHCIREGGQDVPSNKDVTSLDWNSEGTLLATGSYDGFARIWTKDGNLASTLGQHKGPI 269

Query:   319 FSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDN 378
             F+LKWNKKG+++L+   DKT I+WD  T E KQQF FHS P LDVDW++N +FA+ STD 
Sbjct:   270 FALKWNKKGNFILSAGVDKTTIIWDAHTGEAKQQFPFHSAPALDVDWQSNNTFASCSTDM 329

Query:   379 MIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLRE 438
              I+VCK+G++RPIKTF GH  EVN +KWDPTG+LLASCSDD+T KIW+MKQD  VHDL+ 
Sbjct:   330 CIHVCKLGQDRPIKTFQGHTNEVNAIKWDPTGNLLASCSDDMTLKIWSMKQDNCVHDLQA 389

Query:   439 HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLA 498
             H+KEIYTI+WSPTG GTNNPN  L+LASASFDSTV+LWDV+ G  +++L  H+EPVYS+A
Sbjct:   390 HNKEIYTIKWSPTGPGTNNPNANLMLASASFDSTVRLWDVDRGICIHTLTKHQEPVYSVA 449

Query:   499 FSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCV 558
             FSP G YLASGS DK +HIW+ + G +V +Y G GGIFEVCWN  GDK+ A  ++ +VCV
Sbjct:   450 FSPDGRYLASGSFDKCVHIWNTQTGALVHSYRGTGGIFEVCWNAAGDKVGASASDGSVCV 509

Query:   559 LDFR 562
             LD R
Sbjct:   510 LDLR 513

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0016568 "chromatin modification" evidence=IEA

GO:0060070 "canonical Wnt receptor signaling pathway" evidence=IMP

GO:0003714 "transcription corepressor activity" evidence=IGI;IDA

GO:0042393 "histone binding" evidence=IDA

GO:0017053 "transcriptional repressor complex" evidence=IDA

GO:0044212 "transcription regulatory region DNA binding" evidence=ISS;IDA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IDA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0008013 "beta-catenin binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=ISS

GO:0005876 "spindle microtubule" evidence=IDA

GO:0000118 "histone deacetylase complex" evidence=IDA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0047485 "protein N-terminus binding" evidence=IPI

GO:0005654 "nucleoplasm" evidence=TAS

GO:0007219 "Notch signaling pathway" evidence=TAS

GO:0044255 "cellular lipid metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0005730 "nucleolus" evidence=IDA

RGD|1560053 Tbl1xr1 "transducin (beta)-like 1 X-linked receptor 1" [Rattus norvegicus (taxid:10116)]

 Score = 1203 (428.5 bits), Expect = 3.0e-144, Sum P(2) = 3.0e-144
 Identities = 218/364 (59%), Positives = 275/364 (75%)

Query:   202 EIPNSDVTILEGHTSEVCACAWSPXXXXXXXXXXDSTARIWTIADGTSNGGAQNGPLNVL 261
             EIP +   +L GH SEV  CAW+P          DSTARIW +++ +++G  Q      L
Sbjct:   156 EIPPNKAVVLRGHESEVFICAWNPVSDLLASGSGDSTARIWNLSENSTSGPTQ------L 209

Query:   262 VLKH-VK--GRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPI 318
             VL+H ++  G+    +KDVT+LDWN EGTLLATGSYDG ARIW+ +G+L  TL +HKGPI
Sbjct:   210 VLRHCIREGGQDVPSNKDVTSLDWNSEGTLLATGSYDGFARIWTKDGNLASTLGQHKGPI 269

Query:   319 FSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDN 378
             F+LKWNKKG+++L+   DKT I+WD  T E KQQF FHS P LDVDW++N +FA+ STD 
Sbjct:   270 FALKWNKKGNFILSAGVDKTTIIWDAHTGEAKQQFPFHSAPALDVDWQSNNTFASCSTDM 329

Query:   379 MIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLRE 438
              I+VCK+G++RPIKTF GH  EVN +KWDPTG+LLASCSDD+T KIW+MKQD  VHDL+ 
Sbjct:   330 CIHVCKLGQDRPIKTFQGHTNEVNAIKWDPTGNLLASCSDDMTLKIWSMKQDNCVHDLQA 389

Query:   439 HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLA 498
             H+KEIYTI+WSPTG GTNNPN  L+LASASFDSTV+LWDV+ G  +++L  H+EPVYS+A
Sbjct:   390 HNKEIYTIKWSPTGPGTNNPNANLMLASASFDSTVRLWDVDRGICIHTLTKHQEPVYSVA 449

Query:   499 FSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCV 558
             FSP G YLASGS DK +HIW+ + G +V +Y G GGIFEVCWN  GDK+ A  ++ +VCV
Sbjct:   450 FSPDGRYLASGSFDKCVHIWNTQTGALVHSYRGTGGIFEVCWNAAGDKVGASASDGSVCV 509

Query:   559 LDFR 562
             LD R
Sbjct:   510 LDLR 513

GO:0000118 "histone deacetylase complex" evidence=IEA;ISO

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA;ISO

GO:0003674 "molecular_function" evidence=ND

GO:0003677 "DNA binding" evidence=ISO

GO:0003714 "transcription corepressor activity" evidence=IEA;ISO

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=ISO

GO:0005876 "spindle microtubule" evidence=IEA;ISO

GO:0008013 "beta-catenin binding" evidence=IEA;ISO

GO:0008150 "biological_process" evidence=ND

GO:0017053 "transcriptional repressor complex" evidence=IEA;ISO

GO:0042393 "histone binding" evidence=IEA;ISO

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA;ISO

GO:0044212 "transcription regulatory region DNA binding" evidence=IEA;ISO

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=ISO

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISO

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA;ISO

GO:0047485 "protein N-terminus binding" evidence=IEA;ISO

GO:0060070 "canonical Wnt receptor signaling pathway" evidence=IEA;ISO

GO:0005730 "nucleolus" evidence=ISO

UNIPROTKB|C3UJQ7 TBL1Y "Transducin (Beta)-like 1 Y-linked" [Gorilla gorilla (taxid:9593)]

 Score = 1201 (427.8 bits), Expect = 3.0e-144, Sum P(2) = 3.0e-144
 Identities = 227/400 (56%), Positives = 283/400 (70%)

Query:   166 VQEEKVNSKPEENGVLQGEKGPEPMDIATTSASESFEIPNSDVTILEGHTSEVCACAWSP 225
             ++E  VN   EENG  +     +PM+I         EIP +  T+L GH SEV  CAW+P
Sbjct:   137 IREATVNG--EENGAHEINNHSKPMEI-----DRDVEIPPNKATVLRGHESEVFICAWNP 189

Query:   226 XXXXXXXXXXDSTARIWTIADGTSNGGAQNGPLNVLVLKHV--KGRTNEKS-KDVTTLDW 282
                       DSTARIW + +  SNGG+       LVL+H   +G  +  S KDVT+LDW
Sbjct:   190 VSDLLASGSGDSTARIWNLNEN-SNGGSTQ-----LVLRHCIREGWHDVPSNKDVTSLDW 243

Query:   283 NGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVW 342
             N +GTLLA GSYDG ARIW+ NG+L  TL +HKGPIF+LKWNKKG+Y+L+   DKT I+W
Sbjct:   244 NSDGTLLAMGSYDGFARIWTENGNLASTLGQHKGPIFALKWNKKGNYILSAGVDKTTIIW 303

Query:   343 DVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVN 402
             D  T E KQQF FHS P LDVDW+NN +FA+  TD  I+VC++G + P+KTF GH  EVN
Sbjct:   304 DAHTGEAKQQFPFHSAPALDVDWQNNTTFASCGTDMCIHVCRLGCDLPVKTFQGHTNEVN 363

Query:   403 CVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQL 462
              +KWDP+G LLASCSDD+T KIW+MKQD  VHDL+ HSKEIYTI+WSPTG  T+NPN  +
Sbjct:   364 AIKWDPSGMLLASCSDDMTLKIWSMKQDACVHDLQAHSKEIYTIKWSPTGPATSNPNSSI 423

Query:   463 ILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKE 522
             +LASASFDSTV+LWDVE G   ++L  H+EPVYS+AFSP G+YLASGS DK +HIW+ + 
Sbjct:   424 MLASASFDSTVRLWDVEQGVCTHTLTKHQEPVYSIAFSPDGKYLASGSFDKCVHIWNTQS 483

Query:   523 GKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLDFR 562
             G +V +Y G GGIFEVCWN  GDK+ A  ++ +VCVLD R
Sbjct:   484 GSLVHSYQGTGGIFEVCWNARGDKVGASASDGSVCVLDLR 523

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISS

GO:0003714 "transcription corepressor activity" evidence=ISS

GO:0005876 "spindle microtubule" evidence=ISS

GO:0006508 "proteolysis" evidence=ISS

GO:0007605 "sensory perception of sound" evidence=ISS

GO:0008013 "beta-catenin binding" evidence=ISS

GO:0017053 "transcriptional repressor complex" evidence=ISS

GO:0042393 "histone binding" evidence=ISS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISS

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=ISS

GO:0060070 "canonical Wnt receptor signaling pathway" evidence=ISS

ZFIN|ZDB-GENE-040426-1192 tbl1xr1 "transducin (beta)-like 1 X-linked receptor 1" [Danio rerio (taxid:7955)]

 Score = 1195 (425.7 bits), Expect = 6.1e-144, Sum P(2) = 6.1e-144
 Identities = 218/365 (59%), Positives = 272/365 (74%)

Query:   202 EIPNSDVTILEGHTSEVCACAWSPXXXXXXXXXXDSTARIWTIADGTSNGGAQNGPLNVL 261
             EIP S   +L GH SEV  CAW+P          DSTARIW +++ ++ G  Q      L
Sbjct:   152 EIPASKAMVLRGHESEVFICAWNPVSDLLASGSGDSTARIWNLSESSTGGSTQ------L 205

Query:   262 VLKH-VK--GRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPI 318
             VL+H ++  G+    +KDVT+LDWN EGTLLATGSYDG ARIW+ +G+L  TL +HKGPI
Sbjct:   206 VLRHCIREGGQDVPSNKDVTSLDWNSEGTLLATGSYDGFARIWTKDGNLASTLGQHKGPI 265

Query:   319 FSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDN 378
             F+LKWNKKG+++L+   DKT I+WD  T E KQQF FHS P LDVDW++N +FA+ STD 
Sbjct:   266 FALKWNKKGNFILSAGVDKTTIIWDAHTGEAKQQFPFHSAPALDVDWQSNNTFASCSTDM 325

Query:   379 MIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLRE 438
              I+VCK+G+ RPIKTF GH  EVN +KWDPTG+LLASCSDD+T K+W+MKQD  VHDL+ 
Sbjct:   326 CIHVCKLGQERPIKTFQGHTNEVNAIKWDPTGNLLASCSDDMTLKLWSMKQDTCVHDLQA 385

Query:   439 HSKEIYTIRWSPTGSGTNNPNQQLILA-SASFDSTVKLWDVELGKLLYSLNGHREPVYSL 497
             HSKEIYTI+WSPTG GTNNPN  L+LA SASFDSTV+LWD E G  +++L  H+EPVYS+
Sbjct:   386 HSKEIYTIKWSPTGPGTNNPNANLMLARSASFDSTVRLWDAERGACIHTLTKHQEPVYSV 445

Query:   498 AFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVC 557
             AFSP G +LASGS DK +HIW+ + G +V +Y G GGIFEVCWN  GDK+ A  ++ +VC
Sbjct:   446 AFSPDGRHLASGSFDKCVHIWNTQSGALVNSYRGTGGIFEVCWNSTGDKVGASASDGSVC 505

Query:   558 VLDFR 562
             VLD R
Sbjct:   506 VLDLR 510

GO:0003674 "molecular_function" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6GPC6	TB1RB_XENLA	No assigned EC number	0.5017	0.9165	0.9885	N/A	no
Q8BHJ5	TBL1R_MOUSE	No assigned EC number	0.4964	0.9023	0.9883	yes	no
Q9BQ87	TBL1Y_HUMAN	No assigned EC number	0.4982	0.9129	0.9846	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	563
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-82
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-65
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	3e-44
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	5e-37
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	3e-36
PTZ00420	568	PTZ00420, PTZ00420, coronin; Provisional	2e-10
smart00320	40	smart00320, WD40, WD40 repeats	4e-10
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	7e-10
smart00320	40	smart00320, WD40, WD40 repeats	8e-10
PTZ00420	568	PTZ00420, PTZ00420, coronin; Provisional	1e-09
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	2e-09
PTZ00421	493	PTZ00421, PTZ00421, coronin; Provisional	4e-09
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	6e-09
smart00320	40	smart00320, WD40, WD40 repeats	8e-09
smart00320	40	smart00320, WD40, WD40 repeats	2e-07
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	4e-07
smart00320	40	smart00320, WD40, WD40 repeats	2e-06
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	2e-06
pfam08513	27	pfam08513, LisH, LisH	2e-06
PLN00181	793	PLN00181, PLN00181, protein SPA1-RELATED; Provisio	5e-06
PLN00181	793	PLN00181, PLN00181, protein SPA1-RELATED; Provisio	5e-06
PTZ00421	493	PTZ00421, PTZ00421, coronin; Provisional	7e-06
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	6e-05
pfam08662	194	pfam08662, eIF2A, Eukaryotic translation initiatio	6e-05
smart00320	40	smart00320, WD40, WD40 repeats	1e-04
smart00667	34	smart00667, LisH, Lissencephaly type-1-like homolo	3e-04
PLN00181	793	PLN00181, PLN00181, protein SPA1-RELATED; Provisio	4e-04

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  258 bits (662), Expect = 2e-82
 Identities = 107/314 (34%), Positives = 162/314 (51%), Gaps = 28/314 (8%)

Query: 208 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVK 267
              L+GHT  V   A+SP G LLA+GSGD T ++W +  G              +L+ +K
Sbjct: 2   RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGE-------------LLRTLK 48

Query: 268 GRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKK 326
           G     +  V  +  + +GT LA+GS D   R+W    G+   TL+ H   + S+ ++  
Sbjct: 49  G----HTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPD 104

Query: 327 GDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSF-ATSSTDNMIYVCKI 385
           G  L + S DKT  VWDV+T +       H+     V +  + +F A+SS D  I +  +
Sbjct: 105 GRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDL 164

Query: 386 GENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYT 445
              + + T  GH GEVN V + P G  L S S D T K+W++   K +  LR H   + +
Sbjct: 165 RTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNS 224

Query: 446 IRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEY 505
           + +SP G          +LAS S D T+++WD+  G+ + +L+GH   V SLA+SP G+ 
Sbjct: 225 VAFSPDG---------YLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKR 275

Query: 506 LASGSLDKSMHIWS 519
           LASGS D ++ IW 
Sbjct: 276 LASGSADGTIRIWD 289

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  214 bits (547), Expect = 2e-65
 Identities = 87/258 (33%), Positives = 138/258 (53%), Gaps = 11/258 (4%)

Query: 307 LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDW- 365
           L+ TL  H G +  + ++  G  L TGS D T  VWD++T E  +  + H+GP  DV   
Sbjct: 1   LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAAS 60

Query: 366 RNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIW 425
            +    A+ S+D  I +  +     ++T  GH   V+ V + P G +L+S S D T K+W
Sbjct: 61  ADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVW 120

Query: 426 NMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLY 485
           +++  K +  LR H+  + ++ +SP G+          +AS+S D T+KLWD+  GK + 
Sbjct: 121 DVETGKCLTTLRGHTDWVNSVAFSPDGT---------FVASSSQDGTIKLWDLRTGKCVA 171

Query: 486 SLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTG-NGGIFEVCWNKEG 544
           +L GH   V S+AFSP GE L S S D ++ +W L  GK + T  G   G+  V ++ +G
Sbjct: 172 TLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDG 231

Query: 545 DKIAACFANHTVCVLDFR 562
             +A+   + T+ V D R
Sbjct: 232 YLLASGSEDGTIRVWDLR 249

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  163 bits (412), Expect = 3e-44
 Identities = 113/393 (28%), Positives = 189/393 (48%), Gaps = 32/393 (8%)

Query: 180 VLQGEKGPEPMDIATTSASESFEIPNSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTA 239
           +L        + +    +     +P+    +L GH   + + A+SP G LL SGS D T 
Sbjct: 30  LLSLGSSESGILLLALLSDSLVSLPDLSSLLLRGHEDSITSIAFSPDGELLLSGSSDGTI 89

Query: 240 RIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQAR 299
           ++W + +G              ++K ++G  +     +     +G   LLA+ S DG  +
Sbjct: 90  KLWDLDNGEK------------LIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVK 137

Query: 300 IWSTNGDLKC--TLSKHKGPIFSLKWNKKGDYLLTGSC-DKTAIVWDVKTEEWKQQFEFH 356
           +W  +   K   TL  H   + SL ++  G  L +GS  D T  +WD++T +       H
Sbjct: 138 LWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGH 197

Query: 357 SGPTLDVDWR--NNVSFATSSTDNMIYVCKIGENRPIK-TFAGHQGEVNCVKWDPTGSLL 413
           + P   + +     +  A+ S+D  I +  +   + ++ T +GH   V    + P GSLL
Sbjct: 198 TDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSS-FSPDGSLL 256

Query: 414 ASCSDDVTAKIWNMKQDKY-VHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDST 472
           AS S D T ++W+++     +  L  HS  + ++ +SP G          +LAS S D T
Sbjct: 257 ASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGK---------LLASGSSDGT 307

Query: 473 VKLWDVELGKLLY--SLNGHREPVYSLAFSPTGEYLASG-SLDKSMHIWSLKEGKIVKTY 529
           V+LWD+E GKLL   +L GH  PV SL+FSP G  L SG S D ++ +W L+ GK +KT 
Sbjct: 308 VRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTL 367

Query: 530 TGNGGIFEVCWNKEGDKIAACFANHTVCVLDFR 562
            G+  +  V ++ +G  +++   + TV + D  
Sbjct: 368 EGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLS 400

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  142 bits (359), Expect = 5e-37
 Identities = 90/312 (28%), Positives = 152/312 (48%), Gaps = 23/312 (7%)

Query: 262 VLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSL 321
           +LK  +   +  S  + +L  +  G LL     D    +   +      L  H+  I S+
Sbjct: 15  LLKKSELGPSLNSLSLLSLGSSESGILLLALLSDSLVSLPDLS---SLLLRGHEDSITSI 71

Query: 322 KWNKKGDYLLTGSCDKTAIVWDVKTEE--WKQQFEFHSGPTLDVDW----RNNVSFATSS 375
            ++  G+ LL+GS D T  +WD+   E   K     H      +       N++  A+SS
Sbjct: 72  AFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSS 131

Query: 376 TDNMIYVCKI-GENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD-DVTAKIWNMKQDKYV 433
            D  + +  +    + I+T  GH   V  + + P G LLAS S  D T K+W+++  K +
Sbjct: 132 LDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPL 191

Query: 434 HDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYS-LNGHRE 492
             L  H+  + ++ +SP G         L++AS S D T++LWD+  GKLL S L+GH +
Sbjct: 192 STLAGHTDPVSSLAFSPDG--------GLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSD 243

Query: 493 PVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKI-VKTYTGNGG-IFEVCWNKEGDKIAAC 550
            V S +FSP G  LASGS D ++ +W L+     ++T +G+   +  V ++ +G  +A+ 
Sbjct: 244 SVVS-SFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASG 302

Query: 551 FANHTVCVLDFR 562
            ++ TV + D  
Sbjct: 303 SSDGTVRLWDLE 314

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  140 bits (354), Expect = 3e-36
 Identities = 108/331 (32%), Positives = 168/331 (50%), Gaps = 37/331 (11%)

Query: 200 SFEIPNSDVTILEGHTSEVCACAWSPAGSLLASGSG-DSTARIWTIADGTSNGGAQNGPL 258
               P   +  LEGH+  V + A+SP G LLASGS  D T ++W +  G           
Sbjct: 140 DLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGK---------- 189

Query: 259 NVLVLKHVKGRTNEKSKDVTTLDWNGEGT-LLATGSYDGQARIW--STNGDLKCTLSKHK 315
            +  L          +  V++L ++ +G  L+A+GS DG  R+W  ST   L+ TLS H 
Sbjct: 190 PLSTLAG-------HTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHS 242

Query: 316 GPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTE-EWKQQFEFHSGPTLDVDWRNNVS-FAT 373
             + S  ++  G  L +GS D T  +WD+++     +    HS   L V +  +    A+
Sbjct: 243 DSVVSS-FSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLAS 301

Query: 374 SSTDNMIYVCKI--GENRPIKTFAGHQGEVNCVKWDPTGSLLA-SCSDDVTAKIWNMKQD 430
            S+D  + +  +  G+     T  GH+G V+ + + P GSLL    SDD T ++W+++  
Sbjct: 302 GSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTG 361

Query: 431 KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGH 490
           K +  L  HS  + ++ +SP G          +++S S D TV+LWD+  G LL +L+GH
Sbjct: 362 KPLKTLEGHS-NVLSVSFSPDG---------RVVSSGSTDGTVRLWDLSTGSLLRNLDGH 411

Query: 491 REPVYSLAFSPTGEYLASGSLDKSMHIWSLK 521
              V SL FSP G+ LASGS D ++ +W LK
Sbjct: 412 TSRVTSLDFSPDGKSLASGSSDNTIRLWDLK 442

Length = 466

>gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional

 Score = 63.0 bits (153), Expect = 2e-10
 Identities = 44/157 (28%), Positives = 79/157 (50%), Gaps = 19/157 (12%)

Query: 388 NRPIKTFAGHQGEVNCVKWDPTGS-LLASCSDDVTAKIWNMKQD----KYVHD----LRE 438
             P+    GH   +  ++++P  S +LAS S+D+T ++W +  +    K + D    L+ 
Sbjct: 64  KPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKG 123

Query: 439 HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLA 498
           H K+I  I W        NP    I+ S+ FDS V +WD+E  K  + +N  ++ + SL 
Sbjct: 124 HKKKISIIDW--------NPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKK-LSSLK 174

Query: 499 FSPTGEYLASGSLDKSMHIWSLKEGKIVKTY-TGNGG 534
           ++  G  L+   + K MHI   ++ +I  ++   +GG
Sbjct: 175 WNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGG 211

Length = 568

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 54.6 bits (132), Expect = 4e-10
 Identities = 18/38 (47%), Positives = 22/38 (57%)

Query: 389 RPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWN 426
             +KT  GH G V  V + P G  LAS SDD T K+W+
Sbjct: 3   ELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 53.9 bits (130), Expect = 7e-10
 Identities = 22/39 (56%), Positives = 27/39 (69%)

Query: 481 GKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWS 519
           GKLL +L GH  PV S+AFSP G  LASGS D ++ +W 
Sbjct: 1   GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 53.9 bits (130), Expect = 8e-10
 Identities = 22/39 (56%), Positives = 29/39 (74%)

Query: 481 GKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWS 519
           G+LL +L GH  PV S+AFSP G+YLASGS D ++ +W 
Sbjct: 2   GELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional

 Score = 60.3 bits (146), Expect = 1e-09
 Identities = 44/160 (27%), Positives = 70/160 (43%), Gaps = 13/160 (8%)

Query: 202 EIPNSDVTILEGHTSEVCACAWSPAGS-LLASGSGDSTARIWTIADGTSNGGAQNGPLNV 260
           ++    V  L+GHTS +    ++P  S +LASGS D T R+W I     +      P  +
Sbjct: 61  QMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCI 120

Query: 261 LVLKHVKGRTNEKSKDVTTLDWNGEGT-LLATGSYDGQARIWSTNGDLKCTLSKHKGPIF 319
           L             K ++ +DWN     ++ +  +D    IW    + +         + 
Sbjct: 121 L---------KGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLS 171

Query: 320 SLKWNKKGDYLLTGSC-DKTAIVWDVKTEEWKQQFEFHSG 358
           SLKWN KG+ LL+G+C  K   + D + +E    F  H G
Sbjct: 172 SLKWNIKGN-LLSGTCVGKHMHIIDPRKQEIASSFHIHDG 210

Length = 568

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 53.1 bits (128), Expect = 2e-09
 Identities = 19/35 (54%), Positives = 25/35 (71%)

Query: 208 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIW 242
           +  L+GHT  V + A+SP G+LLASGS D T R+W
Sbjct: 4   LRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVW 38

Length = 39

>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional

 Score = 58.8 bits (142), Expect = 4e-09
 Identities = 44/152 (28%), Positives = 73/152 (48%), Gaps = 20/152 (13%)

Query: 384 KIGENRPIKTFAGHQGEVNCVKWDP-TGSLLASCSDDVTAKIWNMKQ--------DKYVH 434
           K+  N PI    G +G +  V ++P     L + S+D T   W + +        D  VH
Sbjct: 63  KLASNPPI--LLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVH 120

Query: 435 DLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPV 494
            L+ H+K++  + + P+           +LASA  D  V +WDVE GK +  +  H + +
Sbjct: 121 -LQGHTKKVGIVSFHPSAMN--------VLASAGADMVVNVWDVERGKAVEVIKCHSDQI 171

Query: 495 YSLAFSPTGEYLASGSLDKSMHIWSLKEGKIV 526
            SL ++  G  L + S DK ++I   ++G IV
Sbjct: 172 TSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIV 203

Length = 493

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 51.2 bits (123), Expect = 6e-09
 Identities = 17/38 (44%), Positives = 25/38 (65%)

Query: 389 RPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWN 426
           + ++T  GH G V  V + P G+LLAS SDD T ++W+
Sbjct: 2   KLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 51.2 bits (123), Expect = 8e-09
 Identities = 17/35 (48%), Positives = 23/35 (65%)

Query: 208 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIW 242
           +  L+GHT  V + A+SP G  LASGS D T ++W
Sbjct: 5   LKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLW 39

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 46.9 bits (112), Expect = 2e-07
 Identities = 17/40 (42%), Positives = 25/40 (62%)

Query: 304 NGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWD 343
           +G+L  TL  H GP+ S+ ++  G YL +GS D T  +WD
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 46.2 bits (110), Expect = 4e-07
 Identities = 17/39 (43%), Positives = 23/39 (58%)

Query: 305 GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWD 343
           G L  TL  H GP+ S+ ++  G+ L +GS D T  VWD
Sbjct: 1   GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 44.2 bits (105), Expect = 2e-06
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 9/47 (19%)

Query: 431 KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWD 477
           + +  L+ H+  + ++ +SP G           LAS S D T+KLWD
Sbjct: 3   ELLKTLKGHTGPVTSVAFSPDGK---------YLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 44.3 bits (105), Expect = 2e-06
 Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 9/47 (19%)

Query: 431 KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWD 477
           K +  L+ H+  + ++ +SP G+         +LAS S D TV++WD
Sbjct: 2   KLLRTLKGHTGPVTSVAFSPDGN---------LLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|149534 pfam08513, LisH, LisH

 Score = 43.8 bits (105), Expect = 2e-06
 Identities = 11/27 (40%), Positives = 16/27 (59%)

Query: 7  EELNYLVFRYLQESGLLHSAFVLGYEA 33
          EELN L++ YL +SG   +A     E+
Sbjct: 1  EELNRLIYDYLVKSGYKETAEAFAKES 27

The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex. Length = 27

>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional

 Score = 49.3 bits (117), Expect = 5e-06
 Identities = 42/170 (24%), Positives = 88/170 (51%), Gaps = 20/170 (11%)

Query: 366 RNNVSFATSSTDNMIYV--CK--IGENR----PIKTFAGHQGEVNCVKWDP-TGSLLASC 416
           R+   FAT+  +  I +  C+  I + R    P+   A  + +++ + W+    S +AS 
Sbjct: 493 RDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELAS-RSKLSGICWNSYIKSQVASS 551

Query: 417 SDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLW 476
           + +   ++W++ + + V +++EH K +++I +S     + +P    +LAS S D +VKLW
Sbjct: 552 NFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYS-----SADPT---LLASGSDDGSVKLW 603

Query: 477 DVELGKLLYSLNGHREPVYSLAF-SPTGEYLASGSLDKSMHIWSLKEGKI 525
            +  G  + ++   +  +  + F S +G  LA GS D  ++ + L+  K+
Sbjct: 604 SINQGVSIGTIKT-KANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKL 652

Length = 793

>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional

 Score = 48.9 bits (116), Expect = 5e-06
 Identities = 35/103 (33%), Positives = 56/103 (54%), Gaps = 6/103 (5%)

Query: 464 LASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFS---PTGEYLASGSLDKSMHIWSL 520
           +AS++F+  V++WDV   +L+  +  H + V+S+ +S   PT   LASGS D S+ +WS+
Sbjct: 548 VASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPT--LLASGSDDGSVKLWSI 605

Query: 521 KEGKIVKTYTGNGGIFEVCWNKE-GDKIAACFANHTVCVLDFR 562
            +G  + T      I  V +  E G  +A   A+H V   D R
Sbjct: 606 NQGVSIGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLR 648

Length = 793

>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional

 Score = 48.4 bits (115), Expect = 7e-06
 Identities = 49/192 (25%), Positives = 85/192 (44%), Gaps = 33/192 (17%)

Query: 211 LEGHTSEVCACAWSP-AGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGR 269
           L+GHT +V   ++ P A ++LAS   D    +W +  G +          V V+K     
Sbjct: 121 LQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKA----------VEVIKCH--- 167

Query: 270 TNEKSKDVTTLDWNGEGTLLATGSYDGQARIWST-NGDLKCTLSKHKGPIFS-LKWNKKG 327
               S  +T+L+WN +G+LL T S D +  I    +G +  ++  H         W K+ 
Sbjct: 168 ----SDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRK 223

Query: 328 DYLLTGSCDKT----AIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTD-NMIYV 382
           D ++T  C K+     ++WD +    K    +    T+D+D  + +       D N++Y+
Sbjct: 224 DLIITLGCSKSQQRQIMLWDTR----KMASPYS---TVDLDQSSALFIPFFDEDTNLLYI 276

Query: 383 CKIGENRPIKTF 394
              GE   I+ F
Sbjct: 277 GSKGEGN-IRCF 287

Length = 493

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 40.0 bits (94), Expect = 6e-05
 Identities = 12/29 (41%), Positives = 20/29 (68%)

Query: 274 SKDVTTLDWNGEGTLLATGSYDGQARIWS 302
           +  VT++ ++ +G LLA+GS DG  R+W 
Sbjct: 11  TGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|149648 pfam08662, eIF2A, Eukaryotic translation initiation factor eIF2A

 Score = 43.8 bits (104), Expect = 6e-05
 Identities = 50/219 (22%), Positives = 79/219 (36%), Gaps = 59/219 (26%)

Query: 321 LKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMI 380
           +KWNK G YLL            V                 DVD + N S+        +
Sbjct: 11  MKWNKNGTYLL------------VLVST-------------DVD-KTNKSYYGEFN---L 41

Query: 381 YVCKIGENRPIKTFA-GHQGEVNCVKWDPTGSLLASCSDDVTAKI--WNMKQDKYVHDLR 437
           Y+       P +      +G ++   W P G   A     + AKI  +++K +  +H L 
Sbjct: 42  YLIGE-TGGPDEVVELDKEGPIHDFAWSPNGKEFAVIYGYMPAKITFFDLKGNV-IHSLG 99

Query: 438 EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDS---TVKLWDVELGKLLYSLNGHREPV 494
           E  +   TI WSP G          ++  A F +    ++ WDV+  K + +        
Sbjct: 100 EQPRN--TIFWSPFGR---------LVLLAGFGNLAGQIEFWDVKNKKKIATA---EASN 145

Query: 495 YSL-AFSPTGEYLASGSL------DKSMHIWSLKEGKIV 526
            +   +SP G Y  + +       D    IW    GK+V
Sbjct: 146 ATDCEWSPDGRYFLTATTSPRLRVDNGFKIWHY-SGKLV 183

This is a family of eukaryotic translation initiation factors. Length = 194

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 39.2 bits (92), Expect = 1e-04
 Identities = 10/29 (34%), Positives = 19/29 (65%)

Query: 274 SKDVTTLDWNGEGTLLATGSYDGQARIWS 302
           +  VT++ ++ +G  LA+GS DG  ++W 
Sbjct: 12  TGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|128913 smart00667, LisH, Lissencephaly type-1-like homology motif

 Score = 37.8 bits (89), Expect = 3e-04
 Identities = 12/34 (35%), Positives = 19/34 (55%)

Query: 4  ITSEELNYLVFRYLQESGLLHSAFVLGYEAGINK 37
          I+  ELN L+  YL  +G   +A  L  E+G++ 
Sbjct: 1  ISRSELNRLILEYLLRNGYEETAETLQKESGLSL 34

Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly. Length = 34

>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional

 Score = 43.2 bits (101), Expect = 4e-04
 Identities = 60/320 (18%), Positives = 122/320 (38%), Gaps = 44/320 (13%)

Query: 274 SKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKH--------KGPIFSLKWNK 325
           S  V  + ++ +G   AT   + + +I+     +K     H        +  +  + WN 
Sbjct: 483 SNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNS 542

Query: 326 K-GDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR--NNVSFATSSTDNMIYV 382
                + + + +    VWDV   +   + + H      +D+   +    A+ S D  + +
Sbjct: 543 YIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKL 602

Query: 383 CKIGENRPIKTFAGHQGEVNCVKW-DPTGSLLASCSDDVTAKIWNMKQDKY-VHDLREHS 440
             I +   I T    +  + CV++   +G  LA  S D     ++++  K  +  +  HS
Sbjct: 603 WSINQGVSIGTIKT-KANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHS 661

Query: 441 KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG------KLLYSLNGHREPV 494
           K +  +R+  + +          L S+S D+T+KLWD+ +         L+S  GH    
Sbjct: 662 KTVSYVRFVDSST----------LVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVK 711

Query: 495 YSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGG--------------IFEVCW 540
             +  S +  Y+A+GS    + ++       V +Y                   I  VCW
Sbjct: 712 NFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCW 771

Query: 541 NKEGDKIAACFANHTVCVLD 560
             +   + A  +   + +L+
Sbjct: 772 RGQSSTLVAANSTGNIKILE 791

Length = 793

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	563
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0772	641	consensus Uncharacterized conserved protein, conta	100.0
KOG1407	313	consensus WD40 repeat protein [Function unknown]	100.0
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0973	942	consensus Histone transcription regulator HIRA, WD	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0288	459	consensus WD40 repeat protein TipD [General functi	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
KOG1407	313	consensus WD40 repeat protein [Function unknown]	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	100.0
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG0275	508	consensus Conserved WD40 repeat-containing protein	100.0
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	100.0
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	100.0
KOG0643	327	consensus Translation initiation factor 3, subunit	99.98
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.98
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.97
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.97
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.97
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.97
KOG0641	350	consensus WD40 repeat protein [General function pr	99.97
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.97
PTZ00421	493	coronin; Provisional	99.97
PTZ00421	493	coronin; Provisional	99.97
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.97
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.97
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.97
KOG0641	350	consensus WD40 repeat protein [General function pr	99.97
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.97
KOG0643	327	consensus Translation initiation factor 3, subunit	99.97
KOG1539	910	consensus WD repeat protein [General function pred	99.97
PLN00181	793	protein SPA1-RELATED; Provisional	99.97
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.97
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.97
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.97
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.96
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.96
KOG2096	420	consensus WD40 repeat protein [General function pr	99.96
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.96
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.96
KOG0289	506	consensus mRNA splicing factor [General function p	99.96
PTZ00420	568	coronin; Provisional	99.96
PTZ00420	568	coronin; Provisional	99.96
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.96
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.96
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.96
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.96
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.96
KOG0289	506	consensus mRNA splicing factor [General function p	99.95
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.95
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.95
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.95
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.95
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.95
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.95
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.95
KOG0639	705	consensus Transducin-like enhancer of split protei	99.95
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.95
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.95
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.95
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.95
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.94
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.94
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.94
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.94
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.94
KOG1274	933	consensus WD40 repeat protein [General function pr	99.94
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.94
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.94
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.94
KOG2096	420	consensus WD40 repeat protein [General function pr	99.94
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.94
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.94
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.94
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.94
KOG1274	933	consensus WD40 repeat protein [General function pr	99.94
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.94
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.93
KOG0267	825	consensus Microtubule severing protein katanin p80	99.93
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.93
KOG2055	514	consensus WD40 repeat protein [General function pr	99.93
KOG1273	405	consensus WD40 repeat protein [General function pr	99.92
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.92
KOG0267	825	consensus Microtubule severing protein katanin p80	99.92
KOG1539	910	consensus WD repeat protein [General function pred	99.92
KOG2048	691	consensus WD40 repeat protein [General function pr	99.92
KOG0646	476	consensus WD40 repeat protein [General function pr	99.91
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.91
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.91
KOG2055	514	consensus WD40 repeat protein [General function pr	99.91
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.91
KOG0646	476	consensus WD40 repeat protein [General function pr	99.91
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.91
KOG2048	691	consensus WD40 repeat protein [General function pr	99.9
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.9
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.9
COG2319	466	FOG: WD40 repeat [General function prediction only	99.9
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.89
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.89
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.89
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.89
KOG0639	705	consensus Transducin-like enhancer of split protei	99.89
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.89
KOG4328	498	consensus WD40 protein [Function unknown]	99.89
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.88
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.88
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.88
KOG1273	405	consensus WD40 repeat protein [General function pr	99.87
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.87
KOG4328	498	consensus WD40 protein [Function unknown]	99.87
COG2319	466	FOG: WD40 repeat [General function prediction only	99.87
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.86
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.86
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.86
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.85
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.85
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.85
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.85
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.85
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.85
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.85
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.84
KOG1963	792	consensus WD40 repeat protein [General function pr	99.83
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.81
KOG4227	609	consensus WD40 repeat protein [General function pr	99.81
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.81
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.8
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.8
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.8
KOG1963	792	consensus WD40 repeat protein [General function pr	99.8
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.8
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.79
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.79
KOG0649	325	consensus WD40 repeat protein [General function pr	99.79
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.78
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.78
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.78
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.77
PRK11028	330	6-phosphogluconolactonase; Provisional	99.77
KOG1188	376	consensus WD40 repeat protein [General function pr	99.76
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.76
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.75
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.75
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.75
PRK01742	429	tolB translocation protein TolB; Provisional	99.74
PRK01742	429	tolB translocation protein TolB; Provisional	99.74
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.74
KOG2139	445	consensus WD40 repeat protein [General function pr	99.73
KOG0649	325	consensus WD40 repeat protein [General function pr	99.73
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.73
KOG1334	559	consensus WD40 repeat protein [General function pr	99.71
KOG2139	445	consensus WD40 repeat protein [General function pr	99.7
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.69
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.69
PRK11028	330	6-phosphogluconolactonase; Provisional	99.68
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.68
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.68
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.68
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.67
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.67
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.66
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.65
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.65
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.64
PRK05137	435	tolB translocation protein TolB; Provisional	99.64
KOG4227	609	consensus WD40 repeat protein [General function pr	99.63
KOG1188	376	consensus WD40 repeat protein [General function pr	99.63
KOG1310	758	consensus WD40 repeat protein [General function pr	99.63
PRK04922	433	tolB translocation protein TolB; Provisional	99.62
PRK02889	427	tolB translocation protein TolB; Provisional	99.62
PRK03629	429	tolB translocation protein TolB; Provisional	99.62
PRK03629	429	tolB translocation protein TolB; Provisional	99.62
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.61
KOG1334	559	consensus WD40 repeat protein [General function pr	99.61
PRK05137	435	tolB translocation protein TolB; Provisional	99.61
PRK04922	433	tolB translocation protein TolB; Provisional	99.6
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.6
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.6
PRK02889	427	tolB translocation protein TolB; Provisional	99.59
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.58
KOG2321	703	consensus WD40 repeat protein [General function pr	99.58
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.57
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.56
KOG1310	758	consensus WD40 repeat protein [General function pr	99.56
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.55
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.54
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.53
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.51
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.5
KOG2315	566	consensus Predicted translation initiation factor	99.5
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.5
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.49
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.48
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.47
PRK00178	430	tolB translocation protein TolB; Provisional	99.46
KOG2321	703	consensus WD40 repeat protein [General function pr	99.45
PRK04792	448	tolB translocation protein TolB; Provisional	99.41
KOG4547	541	consensus WD40 repeat-containing protein [General	99.41
PRK01029	428	tolB translocation protein TolB; Provisional	99.41
PRK00178	430	tolB translocation protein TolB; Provisional	99.4
KOG2314	698	consensus Translation initiation factor 3, subunit	99.4
KOG2315	566	consensus Predicted translation initiation factor	99.39
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.39
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.38
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.34
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.34
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.34
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.33
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.33
KOG2314	698	consensus Translation initiation factor 3, subunit	99.33
KOG4547	541	consensus WD40 repeat-containing protein [General	99.33
PRK04792	448	tolB translocation protein TolB; Provisional	99.32
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.31
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.31
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.29
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.29
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.27
PRK01029	428	tolB translocation protein TolB; Provisional	99.25
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.25
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.22
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.22
PF08513	27	LisH: LisH; InterPro: IPR013720 The LisH motif is	99.21
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.19
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.18
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.13
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.12
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.11
PRK04043	419	tolB translocation protein TolB; Provisional	99.08
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.07
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	99.03
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	99.02
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.01
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	99.01
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.0
COG4946	668	Uncharacterized protein related to the periplasmic	98.97
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.96
PRK04043	419	tolB translocation protein TolB; Provisional	98.95
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.95
KOG1409	404	consensus Uncharacterized conserved protein, conta	98.91
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.89
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.85
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.85
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.84
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.84
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.83
COG4946	668	Uncharacterized protein related to the periplasmic	98.82
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.8
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.8
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.79
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.78
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.77
KOG2695	425	consensus WD40 repeat protein [General function pr	98.75
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.67
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.65
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.64
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.64
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.63
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.61
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.59
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.59
KOG2695	425	consensus WD40 repeat protein [General function pr	98.56
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.56
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.48
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.47
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.47
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.46
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.46
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.43
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.41
PRK02888	635	nitrous-oxide reductase; Validated	98.4
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.33
KOG3621	726	consensus WD40 repeat-containing protein [General	98.33
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.31
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.31
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.29
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.25
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.25
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.21
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.18
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.16
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.14
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.03
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.02
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.96
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	97.94
PRK02888	635	nitrous-oxide reductase; Validated	97.94
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.94
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.93
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.92
KOG1008	783	consensus Uncharacterized conserved protein, conta	97.92
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	97.89
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	97.87
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	97.87
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.86
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.8
smart00667	34	LisH Lissencephaly type-1-like homology motif. Alp	97.78
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.77
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.75
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	97.73
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.68
KOG3621	726	consensus WD40 repeat-containing protein [General	97.66
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.64
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	97.62
COG3391	381	Uncharacterized conserved protein [Function unknow	97.61
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.61
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	97.58
PRK13616	591	lipoprotein LpqB; Provisional	97.54
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.52
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.48
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.43
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.42
KOG1008	783	consensus Uncharacterized conserved protein, conta	97.41
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.4
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.25
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.24
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.22
COG3391	381	Uncharacterized conserved protein [Function unknow	97.19
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.19
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	97.17
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.17
KOG2395	644	consensus Protein involved in vacuole import and d	97.12
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	97.1
KOG2444	238	consensus WD40 repeat protein [General function pr	97.09
PRK13616	591	lipoprotein LpqB; Provisional	97.07
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.05
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	96.97
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	96.96
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	96.92
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	96.88
PRK13684	334	Ycf48-like protein; Provisional	96.83
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	96.81
KOG2395	644	consensus Protein involved in vacuole import and d	96.73
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	96.7
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	96.66
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	96.65
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.45
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	96.39
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.35
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	96.32
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	96.27
PHA02713	557	hypothetical protein; Provisional	96.14
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	96.1
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	96.06
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	96.0
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	95.96
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	95.88
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	95.84
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	95.62
PHA02713	557	hypothetical protein; Provisional	95.37
KOG2444	238	consensus WD40 repeat protein [General function pr	95.05
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	94.94
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	94.79
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	94.73
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	94.65
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	94.33
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	94.21
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	94.02
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	93.96
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	93.87
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	93.86
PHA03098	534	kelch-like protein; Provisional	93.74
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	93.74
KOG2377	657	consensus Uncharacterized conserved protein [Funct	93.71
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	93.56
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	93.47
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	93.27
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	93.27
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	93.09
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	92.89
COG5290	1243	IkappaB kinase complex, IKAP component [Transcript	92.87
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	92.78
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	92.77
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	92.77
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	92.77
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	92.54
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	92.2
COG5167	776	VID27 Protein involved in vacuole import and degra	91.56
PRK10115	686	protease 2; Provisional	91.53
PHA02790	480	Kelch-like protein; Provisional	91.5
KOG2247	615	consensus WD40 repeat-containing protein [General	91.49
PHA03098	534	kelch-like protein; Provisional	90.91
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	90.77
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	90.34
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	90.31
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	90.11
PRK10115	686	protease 2; Provisional	90.08
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	90.02
KOG2377	657	consensus Uncharacterized conserved protein [Funct	89.98
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	89.56
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	89.0
COG5167	776	VID27 Protein involved in vacuole import and degra	88.26
PHA02790	480	Kelch-like protein; Provisional	87.97
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	87.83
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	87.7
PF14727	418	PHTB1_N: PTHB1 N-terminus	87.27
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	87.16
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	87.01
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	86.87
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	86.71
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	85.08
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	84.91
KOG3616	1636	consensus Selective LIM binding factor [Transcript	84.2
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	83.87
PRK13613	599	lipoprotein LpqB; Provisional	83.65
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	83.63
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	83.45
PLN00033	398	photosystem II stability/assembly factor; Provisio	83.18
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	83.14
COG5290	1243	IkappaB kinase complex, IKAP component [Transcript	82.85
PF13449	326	Phytase-like: Esterase-like activity of phytase	82.55
KOG1983	993	consensus Tomosyn and related SNARE-interacting pr	82.36
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	82.11
PRK13684	334	Ycf48-like protein; Provisional	81.83
PF14269	299	Arylsulfotran_2: Arylsulfotransferase (ASST)	81.3
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	80.88

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=3.1e-106  Score=749.75  Aligned_cols=520  Identities=57%  Similarity=0.945  Sum_probs=431.5

Q ss_pred             CCcCccchhhhhHHHHHhcCCceehhccccccCCccCCCCCCCCCchhHHHHHHhhheeeeeeeccCCCCCCCccccccc
Q 008496            2 SSITSEELNYLVFRYLQESGLLHSAFVLGYEAGINKCNIDGNLVPPRALITFVQKGLQYLEMEANLSNSDVDMDEDFSFL   81 (563)
Q Consensus         2 ~~its~evN~Li~rYlqE~g~~~sA~~~~~E~~~~~~~~~~~~ip~gaLv~~~qKgl~y~~~e~~~~~~~~~~~~~~~~~   81 (563)
                      .|||||||||||||||||+||.||||+|++|++|++++++++.|||||||+||||||||+|+|.++.+++...+.++..+
T Consensus         1 msitsdEvN~LV~RYLqE~G~~hsaftf~~Et~is~~n~~~~~vp~gaLi~ivQKGLqY~E~E~~~~~~~~v~d~~~e~~   80 (524)
T KOG0273|consen    1 MSITSDEVNFLVWRYLQESGFSHSAFTFGIETGISQSNINGSLVPPGALISIVQKGLQYVEAEKHLNESGVVFDAPIESL   80 (524)
T ss_pred             CcccHHHHHHHHHHHHHHcCcceeeEEeeecccccccCCCccccChHHHHHHHHhhhhhhheeeeeccCCcccccccccc
Confidence            38999999999999999999999999999999999999998999999999999999999999999999988887888899


Q ss_pred             cccccccccHHHHHHHHHHHhhccCCCCCCCCccccCccccccchhhHhHHHHHHhhhhhhhhcccCCcccccCCCCCcc
Q 008496           82 QPMDLITKDVCELRQMVKEKKKNLNGDRDKENDVDRGHEIEHGRVKEKERLDREKERERDKERVENEKEPEKQHESHPDK  161 (563)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (563)
                      .+++++.+++++++++...++...++...                +  .+..+.++...    ..++..+..+++  .+.
T Consensus        81 ~~~d~v~~~~~ql~~~~~~e~~s~~~~~~----------------~--~~~~~~~~~~s----~s~~ag~~~~~d--~a~  136 (524)
T KOG0273|consen   81 SLEDLVMEDVVQLRQQAFREKLSEEQFCA----------------Q--LKIAQDKESGS----TSTPAGSISQRD--GAK  136 (524)
T ss_pred             chhhhccccccccchhhhhhhccccchhh----------------h--hhhhhhhccCC----cCCCCCcccccc--chh
Confidence            99999999888876432222111110000                0  00000000000    000000000000  000


Q ss_pred             chhhhhhccccCCCcccccccCCCCCCcccccccCCccceecCCCceeEecCCCCceEEEEECCCCC-EEEEeeCCCcEE
Q 008496          162 EMLTVQEEKVNSKPEENGVLQGEKGPEPMDIATTSASESFEIPNSDVTILEGHTSEVCACAWSPAGS-LLASGSGDSTAR  240 (563)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp~~~-~latgs~D~~i~  240 (563)
                      .+..      ....++.....-....+++++..     ...||+..+.+++ |+.+|++|+|+|-.. +|++|+.|.++|
T Consensus       137 ~~er------~~n~eed~a~~I~~~~e~~~i~~-----~~~I~~~~~kvl~-~~~~V~~~~WnP~~~~llasg~~~s~ar  204 (524)
T KOG0273|consen  137 TGER------TSNGEEDKAMSIDVHTEPMEIDG-----GVEIPSSKAKVLR-HESEVFICAWNPLRDGLLASGSGDSTAR  204 (524)
T ss_pred             hcch------hcccccCccccccccccceeecc-----cccccccceeecc-CCCceEEEecCchhhhhhhccCCcccee
Confidence            0000      00000000000011223333332     3468888888888 999999999999755 999999999999


Q ss_pred             EEecCCCCCcCCCCCCCceEEEEEeee---cccccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCceeEeeccCCCC
Q 008496          241 IWTIADGTSNGGAQNGPLNVLVLKHVK---GRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGP  317 (563)
Q Consensus       241 iW~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~  317 (563)
                      +|++.......      .....++|..   +...+..++||+|+|+.+|.+||+|++||.+|+|+.+|.+..++..|++|
T Consensus       205 i~~l~e~~~~~------~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l~~tl~~HkgP  278 (524)
T KOG0273|consen  205 IWNLLENSNIG------STQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGSEDGEARIWNKDGNLISTLGQHKGP  278 (524)
T ss_pred             eeeehhhcccc------chhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEeecCcEEEEEecCchhhhhhhccCCc
Confidence            99987421110      1122344433   34445678999999999999999999999999999999999999999999


Q ss_pred             EEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCC
Q 008496          318 IFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGH  397 (563)
Q Consensus       318 V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h  397 (563)
                      |++|+|+..|+||++++.|+++.+||..++++.++|.+|..+.++++|.++..|++++.|+.|++|.++...|+.+|.||
T Consensus       279 I~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH  358 (524)
T KOG0273|consen  279 IFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGH  358 (524)
T ss_pred             eEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEe
Q 008496          398 QGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWD  477 (563)
Q Consensus       398 ~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd  477 (563)
                      .++|+++.|+|.|.+|+|||+|++++||++.....++.|++|.+.|+++.|+|.+....+|+....+++++.|++|++||
T Consensus       359 ~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwd  438 (524)
T KOG0273|consen  359 HGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWD  438 (524)
T ss_pred             cCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEecCCCEEEEEEcCCCCEEEEEECCCeEE
Q 008496          478 VELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVC  557 (563)
Q Consensus       478 ~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~~~~i~~l~w~~~g~~la~~~~~~~v~  557 (563)
                      +..+.+++++..|..||++++|||+|+|+|+|+.||.|+||+.+++++++.+.++++|++|+|+.+|++|++|++++.++
T Consensus       439 v~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~~Ifel~Wn~~G~kl~~~~sd~~vc  518 (524)
T KOG0273|consen  439 VESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGTGGIFELCWNAAGDKLGACASDGSVC  518 (524)
T ss_pred             ccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCCCeEEEEEEcCCCCEEEEEecCCCce
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeeC
Q 008496          558 VLDFRM  563 (563)
Q Consensus       558 v~~~~~  563 (563)
                      |+|||+
T Consensus       519 vldlr~  524 (524)
T KOG0273|consen  519 VLDLRK  524 (524)
T ss_pred             EEEecC
Confidence            999996

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1e-56  Score=408.36  Aligned_cols=325  Identities=31%  Similarity=0.538  Sum_probs=295.3

Q ss_pred             eEecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCE
Q 008496          209 TILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTL  288 (563)
Q Consensus       209 ~~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~  288 (563)
                      ..+.||...|.|++|+|+|..||||++|.++|+||+.+.+.             +..++    .|...|.|++|+|||+.
T Consensus       109 sS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp-------------~~t~K----gH~~WVlcvawsPDgk~  171 (480)
T KOG0271|consen  109 SSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETP-------------LFTCK----GHKNWVLCVAWSPDGKK  171 (480)
T ss_pred             cccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCc-------------ceeec----CCccEEEEEEECCCcch
Confidence            35789999999999999999999999999999999976442             12222    35678999999999999


Q ss_pred             EEEEeCCCeEEEEEcC--CceeEeeccCCCCEEEEEeCC-----CCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeE
Q 008496          289 LATGSYDGQARIWSTN--GDLKCTLSKHKGPIFSLKWNK-----KGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTL  361 (563)
Q Consensus       289 l~sg~~dg~i~vw~~~--~~~~~~~~~h~~~V~~l~~~~-----~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~  361 (563)
                      ||+|+.||.|++||..  +.....+.+|+..|++|+|.|     ...+|++++.||+|+|||+..+.++..+..|..++.
T Consensus       172 iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VT  251 (480)
T KOG0271|consen  172 IASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVT  251 (480)
T ss_pred             hhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceE
Confidence            9999999999999954  455668999999999999976     457899999999999999999999999999999999


Q ss_pred             EEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEEC-----------CCCC-------------------
Q 008496          362 DVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWD-----------PTGS-------------------  411 (563)
Q Consensus       362 ~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~-----------~~~~-------------------  411 (563)
                      ++.|-.+..+.+++.|++|++|+...++.++.++||...|+.++.+           |.++                   
T Consensus       252 CvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~  331 (480)
T KOG0271|consen  252 CVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAV  331 (480)
T ss_pred             EEEEcCCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999998876           3343                   


Q ss_pred             ------EEEEEeCCCcEEEEeCCC-CceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEE
Q 008496          412 ------LLASCSDDVTAKIWNMKQ-DKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLL  484 (563)
Q Consensus       412 ------~las~s~dg~i~iwd~~~-~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~  484 (563)
                            .+++||+|+++.+|+... .+++..+.+|...|..+.|+|++.         ++||+|+|.+||+||-++|+.+
T Consensus       332 ~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r---------~IASaSFDkSVkLW~g~tGk~l  402 (480)
T KOG0271|consen  332 LKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGR---------YIASASFDKSVKLWDGRTGKFL  402 (480)
T ss_pred             hccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCcc---------EEEEeecccceeeeeCCCcchh
Confidence                  399999999999999754 457888999999999999999986         8999999999999999999999


Q ss_pred             EEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEecC-CCEEEEEEcCCCCEEEEEECCCeEEEE
Q 008496          485 YSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGN-GGIFEVCWNKEGDKIAACFANHTVCVL  559 (563)
Q Consensus       485 ~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~~-~~i~~l~w~~~g~~la~~~~~~~v~v~  559 (563)
                      .+++||-.+|+.++||.|.++|++||.|.+++||++++.++...+.++ ..|+.+.|+|||.++|.|..|+.+.+|
T Consensus       403 asfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw  478 (480)
T KOG0271|consen  403 ASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLW  478 (480)
T ss_pred             hhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEee
Confidence            999999999999999999999999999999999999999998888864 569999999999999999999988887

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=5.6e-49  Score=357.90  Aligned_cols=287  Identities=32%  Similarity=0.581  Sum_probs=254.5

Q ss_pred             ceeEecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECC--
Q 008496          207 DVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG--  284 (563)
Q Consensus       207 ~~~~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~--  284 (563)
                      +..+.++|...|.|++|+|||+.||||+.||+|++||..++...+.+                ..+|.+.|++++|.|  
T Consensus       149 p~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~----------------l~gH~K~It~Lawep~h  212 (480)
T KOG0271|consen  149 PLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRA----------------LRGHKKWITALAWEPLH  212 (480)
T ss_pred             cceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCccccc----------------ccCcccceeEEeecccc
Confidence            45788999999999999999999999999999999998876543321                234678999999976  


Q ss_pred             ---CCCEEEEEeCCCeEEEEEcCC-ceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCe
Q 008496          285 ---EGTLLATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPT  360 (563)
Q Consensus       285 ---~g~~l~sg~~dg~i~vw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~  360 (563)
                         ..++|++++.||.++|||+.. .....+.+|+.+|+|++|--+| ++++||.|++|++|+...|.+.+.+..|..-+
T Consensus       213 l~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g-liySgS~DrtIkvw~a~dG~~~r~lkGHahwv  291 (480)
T KOG0271|consen  213 LVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG-LIYSGSQDRTIKVWRALDGKLCRELKGHAHWV  291 (480)
T ss_pred             cCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCc-eEEecCCCceEEEEEccchhHHHhhcccchhe
Confidence               578999999999999999874 5677899999999999998665 89999999999999998888877777776544


Q ss_pred             EEEecC-------------C------------------------CceEEEEeCCCeEEEEEcCC-CcceeeecCCCccee
Q 008496          361 LDVDWR-------------N------------------------NVSFATSSTDNMIYVCKIGE-NRPIKTFAGHQGEVN  402 (563)
Q Consensus       361 ~~~~~~-------------~------------------------~~~~~~~~~d~~i~~~~~~~-~~~~~~~~~h~~~i~  402 (563)
                      ..++..             .                        ...+++++.|+++++|+-.. .+|+..+.||...|+
T Consensus       292 N~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn  371 (480)
T KOG0271|consen  292 NHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVN  371 (480)
T ss_pred             eeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhhee
Confidence            433322             1                        12589999999999998765 458999999999999


Q ss_pred             EEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCe
Q 008496          403 CVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK  482 (563)
Q Consensus       403 ~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~  482 (563)
                      .+.|+||++++|++|.|..|++|+.++++.+.+|++|-..||.++|+.+.+         +|+|||.|.++++|++++.+
T Consensus       372 ~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsR---------LlVS~SkDsTLKvw~V~tkK  442 (480)
T KOG0271|consen  372 HVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSR---------LLVSGSKDSTLKVWDVRTKK  442 (480)
T ss_pred             eEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCcc---------EEEEcCCCceEEEEEeeeee
Confidence            999999999999999999999999999999999999999999999999875         89999999999999999999


Q ss_pred             EEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 008496          483 LLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWS  519 (563)
Q Consensus       483 ~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~  519 (563)
                      +...+.||...|+++.|+|||..+++|+.|+.+++|.
T Consensus       443 l~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~  479 (480)
T KOG0271|consen  443 LKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR  479 (480)
T ss_pred             ecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence            9999999999999999999999999999999999994

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=6.1e-46  Score=342.57  Aligned_cols=282  Identities=28%  Similarity=0.478  Sum_probs=258.5

Q ss_pred             CCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCC--CCEEE
Q 008496          213 GHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE--GTLLA  290 (563)
Q Consensus       213 ~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~--g~~l~  290 (563)
                      |-+.+|..|.||+++..|||||-+|.+++|..++..             .+..+.    +|...|.++.|+|.  +..++
T Consensus       173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~-------------~~~~l~----gH~~~v~~~~fhP~~~~~~la  235 (459)
T KOG0272|consen  173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCN-------------LLQTLR----GHTSRVGAAVFHPVDSDLNLA  235 (459)
T ss_pred             cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcc-------------eeEEEe----ccccceeeEEEccCCCcccee
Confidence            566889999999999999999999999999976532             112233    35678999999996  67899


Q ss_pred             EEeCCCeEEEEEcCC-ceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecCCCc
Q 008496          291 TGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNV  369 (563)
Q Consensus       291 sg~~dg~i~vw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  369 (563)
                      ||+.||++++|+.++ .....+.+|...|..++|+|+|++|+|++.|.+.++||++++......++|...+.++.|..+.
T Consensus       236 t~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DG  315 (459)
T KOG0272|consen  236 TASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDG  315 (459)
T ss_pred             eeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCC
Confidence            999999999999987 6777899999999999999999999999999999999999998888889999999999998776


Q ss_pred             eE-EEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEEEEE
Q 008496          370 SF-ATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRW  448 (563)
Q Consensus       370 ~~-~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~  448 (563)
                      .+ ++++.|..-++||+++++.+..+.||..+|.+|+|+|+|-.|||||.|++++|||++..+.+..+.+|...|+.++|
T Consensus       316 SL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~  395 (459)
T KOG0272|consen  316 SLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKY  395 (459)
T ss_pred             ceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEe
Confidence            55 67788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 008496          449 SPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWS  519 (563)
Q Consensus       449 ~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~  519 (563)
                      +|...        .+|+|+|.|++++||..++..++.++.||.+.|.++.++|||.+|+|++.|+++++|.
T Consensus       396 ~p~~g--------~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  396 SPQEG--------YFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR  458 (459)
T ss_pred             cccCC--------eEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence            99432        4899999999999999999999999999999999999999999999999999999995

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=7e-45  Score=335.56  Aligned_cols=278  Identities=25%  Similarity=0.431  Sum_probs=262.2

Q ss_pred             CCCeEEEEECCCCCEEEEEeCCCeEEEEEcC-CceeEeeccCCCCEEEEEeCCC--CCEEEEeeCCCcEEEEECCCCcee
Q 008496          274 SKDVTTLDWNGEGTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKK--GDYLLTGSCDKTAIVWDVKTEEWK  350 (563)
Q Consensus       274 ~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~--~~~l~s~s~D~~v~iwd~~~~~~~  350 (563)
                      ..+|..+.||.++..|+||+.+|.++||+.. ....++|.+|++.|.++.|+|.  +..++||+.||++++|++.+...+
T Consensus       175 ~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l  254 (459)
T KOG0272|consen  175 TRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPL  254 (459)
T ss_pred             CCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcch
Confidence            5789999999999999999999999999965 5778899999999999999997  568999999999999999999999


Q ss_pred             EEeeecccCeEEEecCCCce-EEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCC
Q 008496          351 QQFEFHSGPTLDVDWRNNVS-FATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQ  429 (563)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~  429 (563)
                      +.+..|...+..+.|.++.. +++++-|.+-++||+.+...+....||...|.+++|+|||.+++||+.|..-||||+++
T Consensus       255 ~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRt  334 (459)
T KOG0272|consen  255 QDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRT  334 (459)
T ss_pred             hhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeeccc
Confidence            99999999999999987655 57889999999999999988888899999999999999999999999999999999999


Q ss_pred             CceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcC-CCCEEEE
Q 008496          430 DKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSP-TGEYLAS  508 (563)
Q Consensus       430 ~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp-dg~~las  508 (563)
                      ++++..+.+|.++|+++.|+|+|.         .|||||.|++++|||++..+.++.+.+|..-|+.|.|+| .|++|+|
T Consensus       335 gr~im~L~gH~k~I~~V~fsPNGy---------~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~T  405 (459)
T KOG0272|consen  335 GRCIMFLAGHIKEILSVAFSPNGY---------HLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVT  405 (459)
T ss_pred             CcEEEEecccccceeeEeECCCce---------EEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEE
Confidence            999999999999999999999984         799999999999999999999999999999999999999 6899999


Q ss_pred             EeCCCcEEEEecCCCeeEEEEecCC-CEEEEEEcCCCCEEEEEECCCeEEEEE
Q 008496          509 GSLDKSMHIWSLKEGKIVKTYTGNG-GIFEVCWNKEGDKIAACFANHTVCVLD  560 (563)
Q Consensus       509 gs~dg~v~iw~~~~~~~~~~~~~~~-~i~~l~w~~~g~~la~~~~~~~v~v~~  560 (563)
                      +|.|++++||...++.+++++.++. .|.++..++||..+++++-|.++.+|.
T Consensus       406 asyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  406 ASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR  458 (459)
T ss_pred             cccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence            9999999999999999999998864 699999999999999999999999984

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=1.1e-42  Score=306.74  Aligned_cols=285  Identities=26%  Similarity=0.467  Sum_probs=255.8

Q ss_pred             eeEecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCC
Q 008496          208 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT  287 (563)
Q Consensus       208 ~~~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~  287 (563)
                      .++|+||.+.|.++.|++|.++++++|.||.+.|||..+...        .+..         .-.+..|-+++|+|.|+
T Consensus        48 rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK--------~hai---------pl~s~WVMtCA~sPSg~  110 (343)
T KOG0286|consen   48 RRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNK--------VHAI---------PLPSSWVMTCAYSPSGN  110 (343)
T ss_pred             EEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccc--------eeEE---------ecCceeEEEEEECCCCC
Confidence            378999999999999999999999999999999999765321        0111         12356799999999999


Q ss_pred             EEEEEeCCCeEEEEEcCC-------ceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCe
Q 008496          288 LLATGSYDGQARIWSTNG-------DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPT  360 (563)
Q Consensus       288 ~l~sg~~dg~i~vw~~~~-------~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~  360 (563)
                      ++|+|+.|+...||++..       .....+.+|++-+.++.|-+ ..+|+|+|.|.++.+||+++++....|..|.+.+
T Consensus       111 ~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV  189 (343)
T KOG0286|consen  111 FVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQTQVFHGHTGDV  189 (343)
T ss_pred             eEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccceEEEEecCCcccE
Confidence            999999999999999752       24457899999999999988 5579999999999999999999999999999999


Q ss_pred             EEEecCC--CceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecc
Q 008496          361 LDVDWRN--NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLRE  438 (563)
Q Consensus       361 ~~~~~~~--~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~  438 (563)
                      +.++..+  ...|++++-|++.++||++.+..+++|.||...|++++|.|+|.-|+|||+|+++|+||++.++.+..+..
T Consensus       190 ~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~  269 (343)
T KOG0286|consen  190 MSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSH  269 (343)
T ss_pred             EEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeecc
Confidence            9988765  57899999999999999999999999999999999999999999999999999999999999887766542


Q ss_pred             --cCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEE
Q 008496          439 --HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMH  516 (563)
Q Consensus       439 --~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~  516 (563)
                        -..+|++++|+..|+         +|.+|..|.++.+||.-.++.+..+.+|...|.++..+|||..++|||.|.+++
T Consensus       270 ~~~~~gitSv~FS~SGR---------lLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lr  340 (343)
T KOG0286|consen  270 DSIICGITSVAFSKSGR---------LLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLR  340 (343)
T ss_pred             CcccCCceeEEEccccc---------EEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHhee
Confidence              345789999999886         788899999999999999999999999999999999999999999999999999


Q ss_pred             EEe
Q 008496          517 IWS  519 (563)
Q Consensus       517 iw~  519 (563)
                      ||.
T Consensus       341 iW~  343 (343)
T KOG0286|consen  341 IWA  343 (343)
T ss_pred             ecC
Confidence            994

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=1.3e-41  Score=298.22  Aligned_cols=291  Identities=27%  Similarity=0.472  Sum_probs=246.8

Q ss_pred             eEecCCCCceEEEEECCC-CCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCC
Q 008496          209 TILEGHTSEVCACAWSPA-GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT  287 (563)
Q Consensus       209 ~~l~~h~~~V~~~~~sp~-~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~  287 (563)
                      -+|++|++.|..++-.+. ...|++++.|.++.+|++......    .+    ...+.+    .+|+..|..+..++||+
T Consensus         9 ~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~----~G----~~~r~~----~GHsH~v~dv~~s~dg~   76 (315)
T KOG0279|consen    9 GTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIK----YG----VPVRRL----TGHSHFVSDVVLSSDGN   76 (315)
T ss_pred             eeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccc----cC----ceeeee----eccceEecceEEccCCc
Confidence            478999999999999997 579999999999999998753111    00    112222    33567799999999999


Q ss_pred             EEEEEeCCCeEEEEEcCC-ceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecC
Q 008496          288 LLATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR  366 (563)
Q Consensus       288 ~l~sg~~dg~i~vw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~  366 (563)
                      +.++++.|+.+|+||+.+ +....|.+|+..|.+++|+++...+++|+.|+++++||........               
T Consensus        77 ~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t---------------  141 (315)
T KOG0279|consen   77 FALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYT---------------  141 (315)
T ss_pred             eEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEE---------------
Confidence            999999999999999875 6777899999999999999999999999999999999975432100               


Q ss_pred             CCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCC--CCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEE
Q 008496          367 NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT--GSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIY  444 (563)
Q Consensus       367 ~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~--~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~  444 (563)
                                        +       .-.+|.+.|+|+.|+|+  ..+|+++|.|+++++||+++.+..+.+.+|++.++
T Consensus       142 ------------------~-------~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~  196 (315)
T KOG0279|consen  142 ------------------I-------HEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVN  196 (315)
T ss_pred             ------------------E-------ecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEE
Confidence                              0       00123678999999998  78999999999999999999999999999999999


Q ss_pred             EEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCe
Q 008496          445 TIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGK  524 (563)
Q Consensus       445 ~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~  524 (563)
                      .+.++|+|.         +.++|+.||.+.+||++.+++++.+. |..+|.+++|+|+..+|+.+...+ |+|||+.++.
T Consensus       197 t~~vSpDGs---------lcasGgkdg~~~LwdL~~~k~lysl~-a~~~v~sl~fspnrywL~~at~~s-IkIwdl~~~~  265 (315)
T KOG0279|consen  197 TVTVSPDGS---------LCASGGKDGEAMLWDLNEGKNLYSLE-AFDIVNSLCFSPNRYWLCAATATS-IKIWDLESKA  265 (315)
T ss_pred             EEEECCCCC---------EEecCCCCceEEEEEccCCceeEecc-CCCeEeeEEecCCceeEeeccCCc-eEEEeccchh
Confidence            999999997         78999999999999999999998887 678999999999999998776554 9999999998


Q ss_pred             eEEEEecC---------C-CEEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496          525 IVKTYTGN---------G-GIFEVCWNKEGDKIAACFANHTVCVLDFR  562 (563)
Q Consensus       525 ~~~~~~~~---------~-~i~~l~w~~~g~~la~~~~~~~v~v~~~~  562 (563)
                      ++..+...         . ...+++|++||..|.+|+.++.|+||-++
T Consensus       266 ~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~  313 (315)
T KOG0279|consen  266 VVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA  313 (315)
T ss_pred             hhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence            87776421         1 23589999999999999999999999875

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=1.7e-39  Score=307.49  Aligned_cols=354  Identities=24%  Similarity=0.423  Sum_probs=275.2

Q ss_pred             ceeEecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCC----CCCCC-------------------------
Q 008496          207 DVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGG----AQNGP-------------------------  257 (563)
Q Consensus       207 ~~~~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~----~~~~~-------------------------  257 (563)
                      .+..+.+|...++...|||.|.++|+|...|.+|||+.......-.    ...++                         
T Consensus        51 ~~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~  130 (603)
T KOG0318|consen   51 SVDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGH  130 (603)
T ss_pred             ceeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeE
Confidence            3556789999999999999999999999999999999654111000    00000                         


Q ss_pred             -------------------ceEEEE------------------------EeeecccccCCCCeEEEEECCCCCEEEEEeC
Q 008496          258 -------------------LNVLVL------------------------KHVKGRTNEKSKDVTTLDWNGEGTLLATGSY  294 (563)
Q Consensus       258 -------------------~~~~~~------------------------~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~  294 (563)
                                         ++...+                        .+++.....|++-|.|+.|+|||.++++++.
T Consensus       131 ~F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gs  210 (603)
T KOG0318|consen  131 VFLWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGS  210 (603)
T ss_pred             EEEecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecC
Confidence                               000000                        0122233467788999999999999999999


Q ss_pred             CCeEEEEE-cCCceeEeec---cCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeeccc---CeEEEecCC
Q 008496          295 DGQARIWS-TNGDLKCTLS---KHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSG---PTLDVDWRN  367 (563)
Q Consensus       295 dg~i~vw~-~~~~~~~~~~---~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~---~~~~~~~~~  367 (563)
                      ||.+.+|| ..|.....+.   +|++.|++|.|+||+++|+|++.|++++|||+.+.++++++.+...   ..+.+-|. 
T Consensus       211 Dgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq-  289 (603)
T KOG0318|consen  211 DGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ-  289 (603)
T ss_pred             CccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe-
Confidence            99999999 4577777776   8999999999999999999999999999999999999998876543   34566788 


Q ss_pred             CceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCcee-----------eee
Q 008496          368 NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYV-----------HDL  436 (563)
Q Consensus       368 ~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~-----------~~~  436 (563)
                      +..+++.+.+|+|..++.....+.+++.||...|+++..+|++++|.+|+.||.|.-|+..++..-           ..+
T Consensus       290 kd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~  369 (603)
T KOG0318|consen  290 KDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGM  369 (603)
T ss_pred             CCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEE
Confidence            677888999999999999988899999999999999999999999999999999999998655322           222


Q ss_pred             cccC-CCEEEEEEcc-------------------------------CCC------------------------------C
Q 008496          437 REHS-KEIYTIRWSP-------------------------------TGS------------------------------G  454 (563)
Q Consensus       437 ~~~~-~~i~~~~~~p-------------------------------~~~------------------------------~  454 (563)
                      ..+. +.+.++.|..                               ++.                              .
T Consensus       370 ~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~v  449 (603)
T KOG0318|consen  370 AASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAV  449 (603)
T ss_pred             eecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceE
Confidence            2222 2333332221                               100                              0


Q ss_pred             CCCCCCcEEEEEEeCCCeEEEEeCCCCeE--EEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeE-EEEe-
Q 008496          455 TNNPNQQLILASASFDSTVKLWDVELGKL--LYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIV-KTYT-  530 (563)
Q Consensus       455 ~~~~~~~~~l~s~s~dg~i~iwd~~~~~~--~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~-~~~~-  530 (563)
                      ..+|++ ..++.|+.||.|+||.+..+..  ...+..|..+|++++||||+.|||+|...+.|.+||+.+++.. ..+. 
T Consensus       450 Av~~~~-~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~F  528 (603)
T KOG0318|consen  450 AVSPDG-SEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAF  528 (603)
T ss_pred             EEcCCC-CEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeee
Confidence            001222 2578899999999999886553  2345679999999999999999999999999999999987752 2232 


Q ss_pred             cCCCEEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496          531 GNGGIFEVCWNKEGDKIAACFANHTVCVLDFR  562 (563)
Q Consensus       531 ~~~~i~~l~w~~~g~~la~~~~~~~v~v~~~~  562 (563)
                      +...|.+++|+|+.+++|+|+-|-.|.||+++
T Consensus       529 HtakI~~~aWsP~n~~vATGSlDt~Viiysv~  560 (603)
T KOG0318|consen  529 HTAKINCVAWSPNNKLVATGSLDTNVIIYSVK  560 (603)
T ss_pred             eeeeEEEEEeCCCceEEEeccccceEEEEEcc
Confidence            45679999999999999999999999999986

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=1.1e-39  Score=287.71  Aligned_cols=279  Identities=20%  Similarity=0.376  Sum_probs=254.3

Q ss_pred             CCCCeEEEEECCCCCEEEEEeCCCeEEEEEcC-CceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCC----
Q 008496          273 KSKDVTTLDWNGEGTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTE----  347 (563)
Q Consensus       273 ~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~----  347 (563)
                      |...|.++.|++|.++|++++.||.+.|||.- ......++--..-|..++|+|.|+++++|+.|+.+.||++.+.    
T Consensus        54 H~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g  133 (343)
T KOG0286|consen   54 HLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEG  133 (343)
T ss_pred             cccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecccccccc
Confidence            45679999999999999999999999999964 3444455556678999999999999999999999999999865    


Q ss_pred             --ceeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECC-CCCEEEEEeCCCcEEE
Q 008496          348 --EWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDP-TGSLLASCSDDVTAKI  424 (563)
Q Consensus       348 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~-~~~~las~s~dg~i~i  424 (563)
                        ...+.+..|.+-+.+..+.++..+++++.|.+..+||+.+++.+..|.||.+.|.+++++| +++.++||+-|+..+|
T Consensus       134 ~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~akl  213 (343)
T KOG0286|consen  134 NVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKL  213 (343)
T ss_pred             cceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceee
Confidence              3456688899999999999999999999999999999999999999999999999999999 9999999999999999


Q ss_pred             EeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecC--CCCCEEEEEEcCC
Q 008496          425 WNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNG--HREPVYSLAFSPT  502 (563)
Q Consensus       425 wd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~--h~~~i~~l~~spd  502 (563)
                      ||++.+.+++.|.+|...|.+++|.|+|.         -+++||.|++.|+||++..+.+..+..  -..+|++++||..
T Consensus       214 WD~R~~~c~qtF~ghesDINsv~ffP~G~---------afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~S  284 (343)
T KOG0286|consen  214 WDVRSGQCVQTFEGHESDINSVRFFPSGD---------AFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKS  284 (343)
T ss_pred             eeccCcceeEeecccccccceEEEccCCC---------eeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEccc
Confidence            99999999999999999999999999986         589999999999999999888776652  3458999999999


Q ss_pred             CCEEEEEeCCCcEEEEecCCCeeEEEEecC-CCEEEEEEcCCCCEEEEEECCCeEEEEE
Q 008496          503 GEYLASGSLDKSMHIWSLKEGKIVKTYTGN-GGIFEVCWNKEGDKIAACFANHTVCVLD  560 (563)
Q Consensus       503 g~~lasgs~dg~v~iw~~~~~~~~~~~~~~-~~i~~l~w~~~g~~la~~~~~~~v~v~~  560 (563)
                      |++|.+|..|..+.+||.-.++.+..+.++ ..|.+|.-+|||.-|++|+.|.+++||.
T Consensus       285 GRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  285 GRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA  343 (343)
T ss_pred             ccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence            999999999999999999999988888775 4699999999999999999999999984

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=3.5e-40  Score=299.11  Aligned_cols=297  Identities=31%  Similarity=0.507  Sum_probs=261.4

Q ss_pred             eeEecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCC
Q 008496          208 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT  287 (563)
Q Consensus       208 ~~~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~  287 (563)
                      ...+.||..+|+.+-|+|+-.++|+++.|++|++||..++....             .++    +|.+.|..++|+..|+
T Consensus       101 ~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~-------------~Lr----GHt~sv~di~~~a~Gk  163 (406)
T KOG0295|consen  101 VQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELER-------------SLR----GHTDSVFDISFDASGK  163 (406)
T ss_pred             hhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhh-------------hhh----ccccceeEEEEecCcc
Confidence            34577899999999999999999999999999999998876421             122    3445699999999999


Q ss_pred             EEEEEeCCCeEEEEEcCCc--eeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEec
Q 008496          288 LLATGSYDGQARIWSTNGD--LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDW  365 (563)
Q Consensus       288 ~l~sg~~dg~i~vw~~~~~--~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~  365 (563)
                      +|++++.|=.+.+||.+..  ....+.+|.-.|.+++|-|.|.+++|++.|.+|+.|++.++-+                
T Consensus       164 ~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~c----------------  227 (406)
T KOG0295|consen  164 YLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYC----------------  227 (406)
T ss_pred             EEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEeccccee----------------
Confidence            9999999999999998753  4446789999999999999999999999999999999988754                


Q ss_pred             CCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEE
Q 008496          366 RNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYT  445 (563)
Q Consensus       366 ~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~  445 (563)
                                               +.+|.+|...|..++.+.||.++|+|+.|.++++|-+.++.+...++.|..+|-+
T Consensus       228 -------------------------v~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEc  282 (406)
T KOG0295|consen  228 -------------------------VKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVEC  282 (406)
T ss_pred             -------------------------EEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEE
Confidence                                     3456778888999999999999999999999999999999888899999999999


Q ss_pred             EEEccCCCCCC------CCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 008496          446 IRWSPTGSGTN------NPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWS  519 (563)
Q Consensus       446 ~~~~p~~~~~~------~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~  519 (563)
                      ++|.|......      +.++..++.++|.|++||+||+.++.|++++.+|...|..++|+|-|+||+++.+|++++|||
T Consensus       283 i~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwd  362 (406)
T KOG0295|consen  283 IAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWD  362 (406)
T ss_pred             EEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEE
Confidence            99998754221      222345899999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCeeEEEEecCC-CEEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496          520 LKEGKIVKTYTGNG-GIFEVCWNKEGDKIAACFANHTVCVLDFR  562 (563)
Q Consensus       520 ~~~~~~~~~~~~~~-~i~~l~w~~~g~~la~~~~~~~v~v~~~~  562 (563)
                      ++++++++++..+. -+.++.|+.+-.++++|+-+-++.||..|
T Consensus       363 l~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEcr  406 (406)
T KOG0295|consen  363 LKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR  406 (406)
T ss_pred             eccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeeecC
Confidence            99999999987654 47899999999999999999999999765

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=1.1e-38  Score=289.60  Aligned_cols=333  Identities=23%  Similarity=0.381  Sum_probs=284.4

Q ss_pred             CCceeEecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECC
Q 008496          205 NSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG  284 (563)
Q Consensus       205 ~~~~~~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~  284 (563)
                      +..+.++.+|+.+|++|+.+|+.+++||||.|..+.||++.++...                 ....+|...|+++.||.
T Consensus        54 DdS~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~-----------------~eltgHKDSVt~~~Fsh  116 (399)
T KOG0296|consen   54 DDSLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFA-----------------GELTGHKDSVTCCSFSH  116 (399)
T ss_pred             ccceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcce-----------------eEecCCCCceEEEEEcc
Confidence            4456789999999999999999999999999999999999876421                 12235678899999999


Q ss_pred             CCCEEEEEeCCCeEEEEEcC-CceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEE
Q 008496          285 EGTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDV  363 (563)
Q Consensus       285 ~g~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~  363 (563)
                      +|.+||||+.+|.|+||... +.....+...-..|.=++|||.+..|++|+.||.+.+|.+..+...+.+..|..+..+-
T Consensus       117 dgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G  196 (399)
T KOG0296|consen  117 DGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCG  196 (399)
T ss_pred             CceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccc
Confidence            99999999999999999976 45556666566678889999999999999999999999999988888899999888887


Q ss_pred             ecCC-CceEEEEeCCCeEEEEEcCCCcceeeecCCC-cceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeec----
Q 008496          364 DWRN-NVSFATSSTDNMIYVCKIGENRPIKTFAGHQ-GEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLR----  437 (563)
Q Consensus       364 ~~~~-~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~-~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~----  437 (563)
                      .+.+ ..+++++..|++|++|+..++.|+..+.+.. .+..++.++..+..+.+|+.++.+.+-+..+++.+....    
T Consensus       197 ~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~  276 (399)
T KOG0296|consen  197 EFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVP  276 (399)
T ss_pred             cccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCc
Confidence            7754 4678899999999999999999988877543 357889999999999999999999999988888877666    


Q ss_pred             ----ccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCC
Q 008496          438 ----EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDK  513 (563)
Q Consensus       438 ----~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg  513 (563)
                          .+...+.++.+.|....      -.+.|+|+.||+|.|||+...+..+.+. |..+|..+.|-+ ..+|++++.+|
T Consensus       277 ~l~~~~e~~~esve~~~~ss~------lpL~A~G~vdG~i~iyD~a~~~~R~~c~-he~~V~~l~w~~-t~~l~t~c~~g  348 (399)
T KOG0296|consen  277 ELKPSQEELDESVESIPSSSK------LPLAACGSVDGTIAIYDLAASTLRHICE-HEDGVTKLKWLN-TDYLLTACANG  348 (399)
T ss_pred             cccccchhhhhhhhhcccccc------cchhhcccccceEEEEecccchhheecc-CCCceEEEEEcC-cchheeeccCc
Confidence                34455666666664432      1278999999999999998777665554 889999999998 78999999999


Q ss_pred             cEEEEecCCCeeEEEEecC-CCEEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496          514 SMHIWSLKEGKIVKTYTGN-GGIFEVCWNKEGDKIAACFANHTVCVLDFR  562 (563)
Q Consensus       514 ~v~iw~~~~~~~~~~~~~~-~~i~~l~w~~~g~~la~~~~~~~v~v~~~~  562 (563)
                      .|+.||.++|.++.+|.++ .+|++++.+|+++++++++.|++..||++.
T Consensus       349 ~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~  398 (399)
T KOG0296|consen  349 KVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP  398 (399)
T ss_pred             eEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence            9999999999999999986 479999999999999999999999999864

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=3.4e-40  Score=327.61  Aligned_cols=305  Identities=27%  Similarity=0.490  Sum_probs=255.1

Q ss_pred             eEecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCE
Q 008496          209 TILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTL  288 (563)
Q Consensus       209 ~~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~  288 (563)
                      .++..-...++|+.|++++++||.|-.|..|++|.+...+.              +.++           ..+|   ...
T Consensus       372 YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl--------------~~lk-----------~~~~---l~~  423 (707)
T KOG0263|consen  372 YTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKL--------------KKLK-----------DASD---LSN  423 (707)
T ss_pred             EEEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhh--------------cccc-----------chhh---hcc
Confidence            33333345689999999999999999999999999864321              1111           0011   111


Q ss_pred             EEEEeCCCeEEEEEcCC-ceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecCC
Q 008496          289 LATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN  367 (563)
Q Consensus       289 l~sg~~dg~i~vw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~  367 (563)
                      +-+++.|-.+.+-|.+. ....++.+|.+||+++.|+|+.++|++||.|+++|+|.+.+..+.-.+..|..|+.++.+.+
T Consensus       424 ~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P  503 (707)
T KOG0263|consen  424 IDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAP  503 (707)
T ss_pred             ccccccchhhhhccccCCceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecC
Confidence            22334444455555443 34456899999999999999999999999999999999999999999999999999999865


Q ss_pred             -CceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEEE
Q 008496          368 -NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTI  446 (563)
Q Consensus       368 -~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~  446 (563)
                       ...||+++.|++.++|......|.+.|.||.+.|.|++|+|++.++||||.|.++|+||..++..++.|.+|.++|.++
T Consensus       504 ~GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al  583 (707)
T KOG0263|consen  504 RGYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTAL  583 (707)
T ss_pred             CceEEEecCCCceeeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEE
Confidence             5678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCe--
Q 008496          447 RWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGK--  524 (563)
Q Consensus       447 ~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~--  524 (563)
                      +|+|.|.         +|++|+.||.|+|||+.+++.+..+.+|.+.|+++.||.||..||+||.|++|++||+..-.  
T Consensus       584 ~~Sp~Gr---------~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~  654 (707)
T KOG0263|consen  584 AFSPCGR---------YLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIEL  654 (707)
T ss_pred             EEcCCCc---------eEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhccc
Confidence            9999986         89999999999999999999999999999999999999999999999999999999986421  


Q ss_pred             ----------------------eEEEEec-CCCEEEEEEcCCCCEEEEE
Q 008496          525 ----------------------IVKTYTG-NGGIFEVCWNKEGDKIAAC  550 (563)
Q Consensus       525 ----------------------~~~~~~~-~~~i~~l~w~~~g~~la~~  550 (563)
                                            ++.+|.. +..|..|.|......|++|
T Consensus       655 ~~~~~~~~~~~~~~~~~~~~~~llgs~~tK~tpv~~l~FtrrNl~L~~g  703 (707)
T KOG0263|consen  655 LNLGHISTSNSAITQENNASSLLLGSFYTKNTPVVGLHFTRRNLLLAVG  703 (707)
T ss_pred             ccccccccccccccccCCCCcceeeeeeecCceEEEEEEeccceeEEec
Confidence                                  2333322 3457788887777555555

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=5.4e-38  Score=308.93  Aligned_cols=331  Identities=24%  Similarity=0.423  Sum_probs=278.9

Q ss_pred             eeEecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCC
Q 008496          208 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT  287 (563)
Q Consensus       208 ~~~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~  287 (563)
                      ..++.||...|.++.|+.|.++|++||.|.++|||.+...+..           ..    .....|...|-..-|..+..
T Consensus       138 ~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~-----------~~----~~l~gHkd~VvacfF~~~~~  202 (893)
T KOG0291|consen  138 HRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNL-----------FT----YALNGHKDYVVACFFGANSL  202 (893)
T ss_pred             eeeecCCccceeEEEeccCCceEEeccccceEEEEEecccccc-----------ce----EeccCCCcceEEEEeccCcc
Confidence            3577899999999999999999999999999999998643210           01    11245677899999999999


Q ss_pred             EEEEEeCCCeEEEEEcC------------------------Cce-----------eEeeccCCCCEEEEEeCCCCCEEEE
Q 008496          288 LLATGSYDGQARIWSTN------------------------GDL-----------KCTLSKHKGPIFSLKWNKKGDYLLT  332 (563)
Q Consensus       288 ~l~sg~~dg~i~vw~~~------------------------~~~-----------~~~~~~h~~~V~~l~~~~~~~~l~s  332 (563)
                      .+.+-+.||.+.+|..+                        +..           +.-+......|++.+||+..+.|++
T Consensus       203 ~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvv  282 (893)
T KOG0291|consen  203 DLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVV  282 (893)
T ss_pred             eEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEE
Confidence            99999999999999754                        111           1122333478999999999999999


Q ss_pred             eeCCCcEEEEECCCCceeEEeeecccCeEEEecC--CCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCC
Q 008496          333 GSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR--NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTG  410 (563)
Q Consensus       333 ~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~  410 (563)
                      |-..|...+|.+....+++.+.....++..+.|.  .+...+.|+.=|.+.||+.....-+....||...++|++++|||
T Consensus       283 gFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDg  362 (893)
T KOG0291|consen  283 GFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDG  362 (893)
T ss_pred             EecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCC
Confidence            9999999999999999999998888888888886  33333444555789999999888888889999999999999999


Q ss_pred             CEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCC-----------
Q 008496          411 SLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVE-----------  479 (563)
Q Consensus       411 ~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~-----------  479 (563)
                      +++|||++||.|+|||..++-|..+|..|+..++.++|+..+.         .|+++|.||+||.||+.           
T Consensus       363 q~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~---------~llssSLDGtVRAwDlkRYrNfRTft~P  433 (893)
T KOG0291|consen  363 QLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGN---------VLLSSSLDGTVRAWDLKRYRNFRTFTSP  433 (893)
T ss_pred             cEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCC---------EEEEeecCCeEEeeeecccceeeeecCC
Confidence            9999999999999999999999999999999999999998875         57777777777777763           


Q ss_pred             ---------------------------------CCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCC-ee
Q 008496          480 ---------------------------------LGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEG-KI  525 (563)
Q Consensus       480 ---------------------------------~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~-~~  525 (563)
                                                       +|+.+-.+.||.+||.+++|+|+|..||+||.|.+|++||+-.. ..
T Consensus       434 ~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~  513 (893)
T KOG0291|consen  434 EPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGT  513 (893)
T ss_pred             CceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCce
Confidence                                             34444456699999999999999999999999999999998543 35


Q ss_pred             EEEEecCCCEEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496          526 VKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLDFR  562 (563)
Q Consensus       526 ~~~~~~~~~i~~l~w~~~g~~la~~~~~~~v~v~~~~  562 (563)
                      +.++.....+..++|+|||+.||++..||.+.+||.+
T Consensus       514 vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~  550 (893)
T KOG0291|consen  514 VETLEIRSDVLAVSFRPDGKELAVATLDGQITFFDIK  550 (893)
T ss_pred             eeeEeeccceeEEEEcCCCCeEEEEEecceEEEEEhh
Confidence            6777777889999999999999999999999999975

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=6.8e-40  Score=301.23  Aligned_cols=278  Identities=25%  Similarity=0.481  Sum_probs=246.9

Q ss_pred             CCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCc-eeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEE
Q 008496          274 SKDVTTLDWNGEGTLLATGSYDGQARIWSTNGD-LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQ  352 (563)
Q Consensus       274 ~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~-~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~  352 (563)
                      ...|..+.|.|+|+.|++|+..|...+|+...- ....+..|..+|.++.|+++|.+++||+.+|.|++|+..-...+..
T Consensus        96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~~  175 (464)
T KOG0284|consen   96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKII  175 (464)
T ss_pred             ccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHHh
Confidence            456999999999999999999999999986432 2235678999999999999999999999999999999865544443


Q ss_pred             eeecccCeEEEecC-CCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCc
Q 008496          353 FEFHSGPTLDVDWR-NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDK  431 (563)
Q Consensus       353 ~~~~~~~~~~~~~~-~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~  431 (563)
                      ...|...+.++.+. ++..|++|+.||+|.+|+....++-..++||.-.|.|++|+|...+||+||.|..|++||.+++.
T Consensus       176 ~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~  255 (464)
T KOG0284|consen  176 QAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGS  255 (464)
T ss_pred             hHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcc
Confidence            44455788888885 67789999999999999999988888899999999999999999999999999999999999999


Q ss_pred             eeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCC-CCEEEEEe
Q 008496          432 YVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPT-GEYLASGS  510 (563)
Q Consensus       432 ~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spd-g~~lasgs  510 (563)
                      ++.++..|...|..+.|+|++.         +|+++|.|..++++|+++.+.++++++|+..|+++.|+|- ..+|++|+
T Consensus       256 cl~tlh~HKntVl~~~f~~n~N---------~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg  326 (464)
T KOG0284|consen  256 CLATLHGHKNTVLAVKFNPNGN---------WLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGG  326 (464)
T ss_pred             hhhhhhhccceEEEEEEcCCCC---------eeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeecc
Confidence            9999999999999999999874         8999999999999999988899999999999999999996 46888999


Q ss_pred             CCCcEEEEecCCCeeEEEE--ecCCCEEEEEEcCCCCEEEEEECCCeEEEEE
Q 008496          511 LDKSMHIWSLKEGKIVKTY--TGNGGIFEVCWNKEGDKIAACFANHTVCVLD  560 (563)
Q Consensus       511 ~dg~v~iw~~~~~~~~~~~--~~~~~i~~l~w~~~g~~la~~~~~~~v~v~~  560 (563)
                      .||.|..|.+...+.+...  ...+.|++|+|+|-|-.||+|+.|.++..|.
T Consensus       327 ~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~  378 (464)
T KOG0284|consen  327 SDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWT  378 (464)
T ss_pred             CCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeec
Confidence            9999999999854544433  3456799999999999999999999999884

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=5.4e-38  Score=308.68  Aligned_cols=337  Identities=29%  Similarity=0.519  Sum_probs=272.9

Q ss_pred             ceecCCCc-eeEecC-CCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCe
Q 008496          200 SFEIPNSD-VTILEG-HTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDV  277 (563)
Q Consensus       200 ~~~~~~~~-~~~l~~-h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V  277 (563)
                      .+.+|... +..++. |+++|..++|+|.+.+||+||.|+.+++||+..+.             ....+++    +.+.|
T Consensus        88 v~~L~tgk~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~-------------~th~fkG----~gGvV  150 (775)
T KOG0319|consen   88 VWSLPTGKLIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGY-------------CTHSFKG----HGGVV  150 (775)
T ss_pred             EEEcccchHhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCE-------------EEEEecC----CCceE
Confidence            44555433 345566 99999999999999999999999999999997542             2333333    45779


Q ss_pred             EEEEECCCCC--EEEEEeCCCeEEEEEcCCce--eEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeE--
Q 008496          278 TTLDWNGEGT--LLATGSYDGQARIWSTNGDL--KCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQ--  351 (563)
Q Consensus       278 ~~l~~s~~g~--~l~sg~~dg~i~vw~~~~~~--~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~--  351 (563)
                      .++.|+|+-+  +|++|+.|+.+++|+.....  ..++..|.+.|+++.|.+++..+++++.|+.+.+||+..-+...  
T Consensus       151 ssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~l  230 (775)
T KOG0319|consen  151 SSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTL  230 (775)
T ss_pred             EEEEeCCccchhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhhee
Confidence            9999999754  58999999999999987432  45678899999999999999999999999999999974311000  


Q ss_pred             ---------------------------------Eee--------------------------------------------
Q 008496          352 ---------------------------------QFE--------------------------------------------  354 (563)
Q Consensus       352 ---------------------------------~~~--------------------------------------------  354 (563)
                                                       .+.                                            
T Consensus       231 p~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~  310 (775)
T KOG0319|consen  231 PLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDE  310 (775)
T ss_pred             chhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEc
Confidence                                             000                                            


Q ss_pred             ----------------------------------------------------ecccCeEEEe-cCCCceEEEEeCCCeEE
Q 008496          355 ----------------------------------------------------FHSGPTLDVD-WRNNVSFATSSTDNMIY  381 (563)
Q Consensus       355 ----------------------------------------------------~~~~~~~~~~-~~~~~~~~~~~~d~~i~  381 (563)
                                                                          .|...+++++ |..+..+++++.|++++
T Consensus       311 ~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svi  390 (775)
T KOG0319|consen  311 DELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVI  390 (775)
T ss_pred             cccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEE
Confidence                                                                0000011122 22333478899999999


Q ss_pred             EEEcCCC----cceeeecCCCcceeEEEECCCC-CEEEEEeCCCcEEEEeCCCCce-----e----eeecccCCCEEEEE
Q 008496          382 VCKIGEN----RPIKTFAGHQGEVNCVKWDPTG-SLLASCSDDVTAKIWNMKQDKY-----V----HDLREHSKEIYTIR  447 (563)
Q Consensus       382 ~~~~~~~----~~~~~~~~h~~~i~~~~~~~~~-~~las~s~dg~i~iwd~~~~~~-----~----~~~~~~~~~i~~~~  447 (563)
                      +|.+.++    .++....||++.|.+++++..+ .+|+++|.|+++++|++...+.     +    ...+.|.+.|.+++
T Consensus       391 lWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Va  470 (775)
T KOG0319|consen  391 LWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVA  470 (775)
T ss_pred             EEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceE
Confidence            9988443    2566678999999999997654 5789999999999999876221     1    13457999999999


Q ss_pred             EccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEE
Q 008496          448 WSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVK  527 (563)
Q Consensus       448 ~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~  527 (563)
                      .+|+..         ++||||.|.+.+||+++....+.++.||+..|+++.|+|..+.|||+|.|++|+||.+.+..+++
T Consensus       471 ia~ndk---------LiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClk  541 (775)
T KOG0319|consen  471 IAPNDK---------LIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLK  541 (775)
T ss_pred             ecCCCc---------eEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeee
Confidence            999865         89999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEecC-CCEEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496          528 TYTGN-GGIFEVCWNKEGDKIAACFANHTVCVLDFR  562 (563)
Q Consensus       528 ~~~~~-~~i~~l~w~~~g~~la~~~~~~~v~v~~~~  562 (563)
                      ++.++ ..|.-.+|-.+|+.|++|.+||-+.|||++
T Consensus       542 T~eGH~~aVlra~F~~~~~qliS~~adGliKlWnik  577 (775)
T KOG0319|consen  542 TFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIK  577 (775)
T ss_pred             eecCccceeEeeeeeeCCcEEEeccCCCcEEEEecc
Confidence            99975 468999999999999999999999999986

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=4e-37  Score=268.93  Aligned_cols=289  Identities=27%  Similarity=0.509  Sum_probs=235.5

Q ss_pred             eeEecCCCCceEEEEECCC-CCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCC
Q 008496          208 VTILEGHTSEVCACAWSPA-GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG  286 (563)
Q Consensus       208 ~~~l~~h~~~V~~~~~sp~-~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g  286 (563)
                      +..+.+|++.|-.++|||- |.+|||+|.|..||||+...+.           ....++..  ...|.+.|.+++|+|.|
T Consensus         7 ~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~-----------s~~ck~vl--d~~hkrsVRsvAwsp~g   73 (312)
T KOG0645|consen    7 EQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGD-----------SWTCKTVL--DDGHKRSVRSVAWSPHG   73 (312)
T ss_pred             EEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCC-----------cEEEEEec--cccchheeeeeeecCCC
Confidence            4678899999999999998 8999999999999999976421           12233222  12567889999999999


Q ss_pred             CEEEEEeCCCeEEEEEcCC---ceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEE
Q 008496          287 TLLATGSYDGQARIWSTNG---DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDV  363 (563)
Q Consensus       287 ~~l~sg~~dg~i~vw~~~~---~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~  363 (563)
                      ++|++|++|.++.||...+   ....++.+|...|.+++|+++|++|++|+.|++|.||.+..+.-              
T Consensus        74 ~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddE--------------  139 (312)
T KOG0645|consen   74 RYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDE--------------  139 (312)
T ss_pred             cEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCc--------------
Confidence            9999999999999998653   35668899999999999999999999999999999998753321              


Q ss_pred             ecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCC---CCceeeeecccC
Q 008496          364 DWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMK---QDKYVHDLREHS  440 (563)
Q Consensus       364 ~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~---~~~~~~~~~~~~  440 (563)
                                              -..+..+.+|...|..+.|+|...+|+|||.|.+|++|+-.   ...++.++.+|.
T Consensus       140 ------------------------fec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~  195 (312)
T KOG0645|consen  140 ------------------------FECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHE  195 (312)
T ss_pred             ------------------------EEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCcc
Confidence                                    11234678899999999999999999999999999999865   345788999999


Q ss_pred             CCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEec
Q 008496          441 KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSL  520 (563)
Q Consensus       441 ~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~  520 (563)
                      ..+.++.|.|.|.         .|++++.|++|+||-....-    -..|+.+++.++|.  ...||+|+.|+.|++|.-
T Consensus       196 ~TVW~~~F~~~G~---------rl~s~sdD~tv~Iw~~~~~~----~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~  260 (312)
T KOG0645|consen  196 NTVWSLAFDNIGS---------RLVSCSDDGTVSIWRLYTDL----SGMHSRALYDVPWD--NGVIASGGGDDAIRLFKE  260 (312)
T ss_pred             ceEEEEEecCCCc---------eEEEecCCcceEeeeeccCc----chhcccceEeeeec--ccceEeccCCCEEEEEEe
Confidence            9999999999885         68999999999999754211    12377899999998  458999999999999986


Q ss_pred             CCCe------eEE--EEecCCCEEEEEEcCC-CCEEEEEECCCeEEEEEee
Q 008496          521 KEGK------IVK--TYTGNGGIFEVCWNKE-GDKIAACFANHTVCVLDFR  562 (563)
Q Consensus       521 ~~~~------~~~--~~~~~~~i~~l~w~~~-g~~la~~~~~~~v~v~~~~  562 (563)
                      ...-      ++.  ...+...|+++.|+|. .++|++|+.||.|.+|.+.
T Consensus       261 s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~  311 (312)
T KOG0645|consen  261 SDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE  311 (312)
T ss_pred             cCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence            6421      111  1112346899999995 6899999999999999874

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=2.1e-36  Score=297.81  Aligned_cols=327  Identities=24%  Similarity=0.451  Sum_probs=276.2

Q ss_pred             eEecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCE
Q 008496          209 TILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTL  288 (563)
Q Consensus       209 ~~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~  288 (563)
                      ..|......|+|++|||...+||+|-..|...+|.+++-..             +..+.    .....|.+++|+..|.+
T Consensus       259 ~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~l-------------ih~LS----is~~~I~t~~~N~tGDW  321 (893)
T KOG0291|consen  259 HYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNL-------------IHSLS----ISDQKILTVSFNSTGDW  321 (893)
T ss_pred             eeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceE-------------EEEee----cccceeeEEEecccCCE
Confidence            34444447799999999999999999999999999875321             11111    12356999999999999


Q ss_pred             EEEEeCC-CeEEEEEcCCc-eeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecC
Q 008496          289 LATGSYD-GQARIWSTNGD-LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR  366 (563)
Q Consensus       289 l~sg~~d-g~i~vw~~~~~-~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~  366 (563)
                      ||.|+.. |++-||+.... .+...++|-..+++++++|||+++++|+.||.|+|||...+-|..+|.-|...+..+.|.
T Consensus       322 iA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~  401 (893)
T KOG0291|consen  322 IAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFT  401 (893)
T ss_pred             EEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEE
Confidence            9998765 89999997643 445678999999999999999999999999999999999999999999999999999996


Q ss_pred             C-CceEEEEeCCCeEEEEEcCCCcceeeecCCCc-ceeEEEECCCCCEEEEEeCCC-cEEEEeCCCCceeeeecccCCCE
Q 008496          367 N-NVSFATSSTDNMIYVCKIGENRPIKTFAGHQG-EVNCVKWDPTGSLLASCSDDV-TAKIWNMKQDKYVHDLREHSKEI  443 (563)
Q Consensus       367 ~-~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~-~i~~~~~~~~~~~las~s~dg-~i~iwd~~~~~~~~~~~~~~~~i  443 (563)
                      . +..+++++.||+|+.||+..-+..++|..... ...|++.+|.|.++..|+.|. .|.+|++.+++.+..+.+|.++|
T Consensus       402 ~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPV  481 (893)
T KOG0291|consen  402 ARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPV  481 (893)
T ss_pred             ecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcc
Confidence            4 55678889999999999998888888875433 478999999999998888875 69999999999999999999999


Q ss_pred             EEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCe-EEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCC
Q 008496          444 YTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK-LLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKE  522 (563)
Q Consensus       444 ~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~-~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~  522 (563)
                      .+++|+|.+.         .|+|+|.|.+||+||+-... .+-++. +...+++++|+|||+-||+++.||.|.+||.+.
T Consensus       482 s~l~f~~~~~---------~LaS~SWDkTVRiW~if~s~~~vEtl~-i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~  551 (893)
T KOG0291|consen  482 SGLSFSPDGS---------LLASGSWDKTVRIWDIFSSSGTVETLE-IRSDVLAVSFRPDGKELAVATLDGQITFFDIKE  551 (893)
T ss_pred             eeeEEccccC---------eEEeccccceEEEEEeeccCceeeeEe-eccceeEEEEcCCCCeEEEEEecceEEEEEhhh
Confidence            9999999986         79999999999999986543 333443 566799999999999999999999999999988


Q ss_pred             CeeEEEEec---------------------CCCEEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496          523 GKIVKTYTG---------------------NGGIFEVCWNKEGDKIAACFANHTVCVLDFR  562 (563)
Q Consensus       523 ~~~~~~~~~---------------------~~~i~~l~w~~~g~~la~~~~~~~v~v~~~~  562 (563)
                      +..+.++.+                     ....+.+++++||+.|.+|+....||+|+++
T Consensus       552 ~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~  612 (893)
T KOG0291|consen  552 AVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVP  612 (893)
T ss_pred             ceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECc
Confidence            766544432                     1346789999999999999899999999986

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=4.1e-37  Score=265.50  Aligned_cols=278  Identities=26%  Similarity=0.470  Sum_probs=238.5

Q ss_pred             CEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCC--
Q 008496          228 SLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNG--  305 (563)
Q Consensus       228 ~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~--  305 (563)
                      -+|||+|.|.+||+|...+|.+...          +.+       ....|..|...|++++||.|+. -.||+||++.  
T Consensus        11 viLvsA~YDhTIRfWqa~tG~C~rT----------iqh-------~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~n   72 (311)
T KOG0315|consen   11 VILVSAGYDHTIRFWQALTGICSRT----------IQH-------PDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNN   72 (311)
T ss_pred             eEEEeccCcceeeeeehhcCeEEEE----------Eec-------CccceeeEEEcCCcchhhhccC-CeeEEEEccCCC
Confidence            4799999999999999888764321          111       2467999999999999998875 6899999863  


Q ss_pred             -ceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecCC-CceEEEEeCCCeEEEE
Q 008496          306 -DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN-NVSFATSSTDNMIYVC  383 (563)
Q Consensus       306 -~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~i~~~  383 (563)
                       ..+.++.+|+..|+++.|..+|+++++||.||+++|||++...+.+.|... .++.++...+ ...++++..+|.|++|
T Consensus        73 p~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~-spVn~vvlhpnQteLis~dqsg~irvW  151 (311)
T KOG0315|consen   73 PNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHN-SPVNTVVLHPNQTELISGDQSGNIRVW  151 (311)
T ss_pred             CCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccCC-CCcceEEecCCcceEEeecCCCcEEEE
Confidence             367899999999999999999999999999999999999997777766654 7888877754 5678999999999999


Q ss_pred             EcCCCcceeeec-CCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCC------ceeeeecccCCCEEEEEEccCCCCCC
Q 008496          384 KIGENRPIKTFA-GHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD------KYVHDLREHSKEIYTIRWSPTGSGTN  456 (563)
Q Consensus       384 ~~~~~~~~~~~~-~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~------~~~~~~~~~~~~i~~~~~~p~~~~~~  456 (563)
                      |++.......+. .....|.++...|||++++.+.+-|...+|++-+.      .+++.+++|.+-+..+.++|++.   
T Consensus       152 Dl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k---  228 (311)
T KOG0315|consen  152 DLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVK---  228 (311)
T ss_pred             EccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCc---
Confidence            999876544433 33457999999999999999999999999998653      35677889999999999999986   


Q ss_pred             CCCCcEEEEEEeCCCeEEEEeCCCC-eEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEecCC
Q 008496          457 NPNQQLILASASFDSTVKLWDVELG-KLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNG  533 (563)
Q Consensus       457 ~~~~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~~~  533 (563)
                            +||++|.|.+++||++++. +.-..+.+|...+...+||.||.||+||+.|+.+++|++..++.++.|.++-
T Consensus       229 ------~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~  300 (311)
T KOG0315|consen  229 ------YLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHH  300 (311)
T ss_pred             ------EEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCcc
Confidence                  8999999999999999987 5566789999999999999999999999999999999999999999998753

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=8.9e-39  Score=293.90  Aligned_cols=282  Identities=26%  Similarity=0.480  Sum_probs=250.8

Q ss_pred             CCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEEeC
Q 008496          215 TSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSY  294 (563)
Q Consensus       215 ~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~  294 (563)
                      ...|+.+.|.|+|+.|++|+..|...+|+...-                 .+......|..+|.++.|+++|.++++|..
T Consensus        96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~f-----------------nFEtilQaHDs~Vr~m~ws~~g~wmiSgD~  158 (464)
T KOG0284|consen   96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSF-----------------NFETILQAHDSPVRTMKWSHNGTWMISGDK  158 (464)
T ss_pred             ccceeeEEEcCCCceeEeecccccEEEecCcee-----------------eHHHHhhhhcccceeEEEccCCCEEEEcCC
Confidence            467999999999999999999999999985321                 111223456789999999999999999999


Q ss_pred             CCeEEEEEcCCceeEeeccCC-CCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecCCCc-eEE
Q 008496          295 DGQARIWSTNGDLKCTLSKHK-GPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNV-SFA  372 (563)
Q Consensus       295 dg~i~vw~~~~~~~~~~~~h~-~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  372 (563)
                      +|.|++|+.+-..+..+..|. ..|.+++|+|+...|++||.||+|+|||....+....+..|.-.+.+++|.+.. .++
T Consensus       159 gG~iKyWqpnmnnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLia  238 (464)
T KOG0284|consen  159 GGMIKYWQPNMNNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIA  238 (464)
T ss_pred             CceEEecccchhhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeE
Confidence            999999998876666666665 899999999999999999999999999998887777889999999999998765 567


Q ss_pred             EEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEEEEEccCC
Q 008496          373 TSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTG  452 (563)
Q Consensus       373 ~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~  452 (563)
                      +++.|+.|.+||.+++.++.++.+|...|..+.|+|++++|+|+|.|..++++|+++.+.+..+++|...++++.|+|..
T Consensus       239 sgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~  318 (464)
T KOG0284|consen  239 SGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLN  318 (464)
T ss_pred             EccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeecccccc
Confidence            88999999999999999999999999999999999999999999999999999999888889999999999999999976


Q ss_pred             CCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEe-cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q 008496          453 SGTNNPNQQLILASASFDSTVKLWDVELGKLLYSL-NGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLK  521 (563)
Q Consensus       453 ~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~  521 (563)
                      .        .+|.+|+.||.|..|.+...+.+..+ .+|...|++++|+|-|..||+|+.|.++++|...
T Consensus       319 ~--------~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~  380 (464)
T KOG0284|consen  319 E--------SLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRN  380 (464)
T ss_pred             c--------cceeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeeccC
Confidence            4        38999999999999999855555544 4699999999999999999999999999999753

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=1.3e-37  Score=281.42  Aligned_cols=290  Identities=26%  Similarity=0.469  Sum_probs=252.2

Q ss_pred             ecCCCceeEecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEE
Q 008496          202 EIPNSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLD  281 (563)
Q Consensus       202 ~~~~~~~~~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~  281 (563)
                      ..|.....++.||.+.|.|+++.|...+|+||+.|++++|||+.+++...                 ...++-..|..++
T Consensus       138 HapwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lkl-----------------tltGhi~~vr~va  200 (460)
T KOG0285|consen  138 HAPWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKL-----------------TLTGHIETVRGVA  200 (460)
T ss_pred             cCcceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEE-----------------eecchhheeeeee
Confidence            34445557889999999999999999999999999999999998865211                 1123446689999


Q ss_pred             ECCCCCEEEEEeCCCeEEEEEcCC-ceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCe
Q 008496          282 WNGEGTLLATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPT  360 (563)
Q Consensus       282 ~s~~g~~l~sg~~dg~i~vw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~  360 (563)
                      +|+...|+++++.|+.|+.||+.. +.+....+|-+.|++|+.+|.-..|++|+.|.+++|||+++..            
T Consensus       201 vS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~------------  268 (460)
T KOG0285|consen  201 VSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRA------------  268 (460)
T ss_pred             ecccCceEEEecCCCeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccc------------
Confidence            999999999999999999999864 5566788999999999999999999999999999999998753            


Q ss_pred             EEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccC
Q 008496          361 LDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHS  440 (563)
Q Consensus       361 ~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~  440 (563)
                                                   .+..+.||...|..+.+.|....++|||.|++|++||++.++...++..|.
T Consensus       269 -----------------------------~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hk  319 (460)
T KOG0285|consen  269 -----------------------------SVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHK  319 (460)
T ss_pred             -----------------------------eEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeeccc
Confidence                                         345678999999999999999999999999999999999999999999999


Q ss_pred             CCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEec
Q 008496          441 KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSL  520 (563)
Q Consensus       441 ~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~  520 (563)
                      ..+.+++.+|...         .+||+|.| .|+-|++..|..+..+.+|...|++++...|| ++++|+..|.+.+||.
T Consensus       320 ksvral~lhP~e~---------~fASas~d-nik~w~~p~g~f~~nlsgh~~iintl~~nsD~-v~~~G~dng~~~fwdw  388 (460)
T KOG0285|consen  320 KSVRALCLHPKEN---------LFASASPD-NIKQWKLPEGEFLQNLSGHNAIINTLSVNSDG-VLVSGGDNGSIMFWDW  388 (460)
T ss_pred             ceeeEEecCCchh---------hhhccCCc-cceeccCCccchhhccccccceeeeeeeccCc-eEEEcCCceEEEEEec
Confidence            9999999998653         67888776 69999999999999999999999999998886 6778999999999999


Q ss_pred             CCCeeEEEE---------ecCCCEEEEEEcCCCCEEEEEECCCeEEEEE
Q 008496          521 KEGKIVKTY---------TGNGGIFEVCWNKEGDKIAACFANHTVCVLD  560 (563)
Q Consensus       521 ~~~~~~~~~---------~~~~~i~~l~w~~~g~~la~~~~~~~v~v~~  560 (563)
                      ++|...+..         ....+|+..||+..|.+|++|..|++|.+|.
T Consensus       389 ksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~k  437 (460)
T KOG0285|consen  389 KSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYK  437 (460)
T ss_pred             CcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEe
Confidence            988543322         3356799999999999999999999999984

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=7.3e-37  Score=300.76  Aligned_cols=344  Identities=22%  Similarity=0.340  Sum_probs=283.9

Q ss_pred             eeEecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCC--------------------------CC-C-----
Q 008496          208 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGG--------------------------AQ-N-----  255 (563)
Q Consensus       208 ~~~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~--------------------------~~-~-----  255 (563)
                      ..++.+|.+.|++++|++++..++++|.|..+.|||+...+....                          +. .     
T Consensus       185 l~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~  264 (775)
T KOG0319|consen  185 LHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQY  264 (775)
T ss_pred             HHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEE
Confidence            457789999999999999999999999999999999743211000                          00 0     


Q ss_pred             -------------CC----c-eE-----------------EEEE-----eeecccccCCCCeEEEEE-CCCCCEEEEEeC
Q 008496          256 -------------GP----L-NV-----------------LVLK-----HVKGRTNEKSKDVTTLDW-NGEGTLLATGSY  294 (563)
Q Consensus       256 -------------~~----~-~~-----------------~~~~-----~~~~~~~~~~~~V~~l~~-s~~g~~l~sg~~  294 (563)
                                   .+    + ..                 +.+.     .......+.+..|..|+| .|+.++|++++.
T Consensus       265 ~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATN  344 (775)
T KOG0319|consen  265 WDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATN  344 (775)
T ss_pred             EecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeC
Confidence                         00    0 00                 0000     001122234566788775 567899999999


Q ss_pred             CCeEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCC----ceeEEeeecccCeEEEecC--CC
Q 008496          295 DGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTE----EWKQQFEFHSGPTLDVDWR--NN  368 (563)
Q Consensus       295 dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~----~~~~~~~~~~~~~~~~~~~--~~  368 (563)
                      .+.+|+++..+.....+.+|+..|.++.-..+|.+|+|||.|+++++|.++.+    .+......|...+..+...  ..
T Consensus       345 s~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~a  424 (775)
T KOG0319|consen  345 SPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGA  424 (775)
T ss_pred             CCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCc
Confidence            99999999888777789999999999996667789999999999999977433    2445566788777777663  34


Q ss_pred             ceEEEEeCCCeEEEEEcCCCcc-----ee----eecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeccc
Q 008496          369 VSFATSSTDNMIYVCKIGENRP-----IK----TFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREH  439 (563)
Q Consensus       369 ~~~~~~~~d~~i~~~~~~~~~~-----~~----~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~  439 (563)
                      ..|+++|.|.++.+|++...++     +.    +...|...|+|++++|+.++|||||.|.+.+||++........+.+|
T Consensus       425 sffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH  504 (775)
T KOG0319|consen  425 SFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGH  504 (775)
T ss_pred             cEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCC
Confidence            5789999999999999976321     11    23579999999999999999999999999999999999999999999


Q ss_pred             CCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 008496          440 SKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWS  519 (563)
Q Consensus       440 ~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~  519 (563)
                      ...+.++.|+|...         +|||+|.|++|+||.+.+..|+.++.||+..|..+.|-.+|+.|++|+.||.|++|+
T Consensus       505 ~RGvw~V~Fs~~dq---------~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWn  575 (775)
T KOG0319|consen  505 TRGVWCVSFSKNDQ---------LLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWN  575 (775)
T ss_pred             ccceEEEEeccccc---------eeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEe
Confidence            99999999999764         799999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCeeEEEEecC-CCEEEEEEcCCCCEEEEEECCCeEEEEE
Q 008496          520 LKEGKIVKTYTGN-GGIFEVCWNKEGDKIAACFANHTVCVLD  560 (563)
Q Consensus       520 ~~~~~~~~~~~~~-~~i~~l~w~~~g~~la~~~~~~~v~v~~  560 (563)
                      ++++.++++++.+ ..|++++-++.++++++|++||.+.+|.
T Consensus       576 ikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wk  617 (775)
T KOG0319|consen  576 IKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWK  617 (775)
T ss_pred             ccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEee
Confidence            9999999999764 5799999999999999999999999983

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=3.5e-36  Score=266.72  Aligned_cols=278  Identities=24%  Similarity=0.433  Sum_probs=245.3

Q ss_pred             ccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCce--eEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCc
Q 008496          271 NEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDL--KCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEE  348 (563)
Q Consensus       271 ~~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~--~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~  348 (563)
                      ..+.+.|.++.|+|+|.+|+||+.|..|.+|++.+..  ...+.+|.++|..+.|.++++.+++++.|++++.||+++++
T Consensus        44 ~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~  123 (338)
T KOG0265|consen   44 PGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGK  123 (338)
T ss_pred             CCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccce
Confidence            3456789999999999999999999999999987754  34788999999999999999999999999999999999999


Q ss_pred             eeEEeeecccCeEEEecC--CCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEe
Q 008496          349 WKQQFEFHSGPTLDVDWR--NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWN  426 (563)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd  426 (563)
                      ....+..|..-+..++..  +...+.+++.|+++++||++...+++++. ..-.++++.|..++..+.+|+-|+.|++||
T Consensus       124 ~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d~s~qv~sggIdn~ikvWd  202 (338)
T KOG0265|consen  124 RIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKDTSDQVISGGIDNDIKVWD  202 (338)
T ss_pred             eeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-cceeEEEEEecccccceeeccccCceeeec
Confidence            999999998887777643  33456778899999999999988888775 345789999999999999999999999999


Q ss_pred             CCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC----CeEEEEecCCCC----CEEEEE
Q 008496          427 MKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL----GKLLYSLNGHRE----PVYSLA  498 (563)
Q Consensus       427 ~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~----~~~~~~~~~h~~----~i~~l~  498 (563)
                      ++.....+.+.+|..+|+.+..+|.|.         ++.+-++|.++++||++-    .+++..+.+|..    .....+
T Consensus       203 ~r~~d~~~~lsGh~DtIt~lsls~~gs---------~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cs  273 (338)
T KOG0265|consen  203 LRKNDGLYTLSGHADTITGLSLSRYGS---------FLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCS  273 (338)
T ss_pred             cccCcceEEeecccCceeeEEeccCCC---------ccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceee
Confidence            999999999999999999999999986         688999999999999873    456777766532    346679


Q ss_pred             EcCCCCEEEEEeCCCcEEEEecCCCeeEEEEecC-CCEEEEEEcCCCCEEEEEECCCeEEE
Q 008496          499 FSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGN-GGIFEVCWNKEGDKIAACFANHTVCV  558 (563)
Q Consensus       499 ~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~~-~~i~~l~w~~~g~~la~~~~~~~v~v  558 (563)
                      |||+++++.+|+.|+.+++||.....++-.++++ +.|..+.|+|.-..|..|++|+++.+
T Consensus       274 wsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~l  334 (338)
T KOG0265|consen  274 WSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYL  334 (338)
T ss_pred             ccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEe
Confidence            9999999999999999999999887887777775 56899999999999999999998865

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=1.3e-36  Score=266.88  Aligned_cols=246  Identities=29%  Similarity=0.506  Sum_probs=209.7

Q ss_pred             ceeEecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCC
Q 008496          207 DVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG  286 (563)
Q Consensus       207 ~~~~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g  286 (563)
                      .++.|.||...|..|+.+++|++.++|+.|+++|+||+.+++.             ...+.    +|.+.|++++|++|.
T Consensus        55 ~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~-------------t~~f~----GH~~dVlsva~s~dn  117 (315)
T KOG0279|consen   55 PVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGES-------------TRRFV----GHTKDVLSVAFSTDN  117 (315)
T ss_pred             eeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcE-------------EEEEE----ecCCceEEEEecCCC
Confidence            3567899999999999999999999999999999999987642             12232    356889999999999


Q ss_pred             CEEEEEeCCCeEEEEEcCCceeEeeccC--CCCEEEEEeCCC--CCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEE
Q 008496          287 TLLATGSYDGQARIWSTNGDLKCTLSKH--KGPIFSLKWNKK--GDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLD  362 (563)
Q Consensus       287 ~~l~sg~~dg~i~vw~~~~~~~~~~~~h--~~~V~~l~~~~~--~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~  362 (563)
                      +.+++|+.|.+|++|++-|..+.++..+  ++-|.+++|+|+  ..+|++++.|++|++||+++.+..            
T Consensus       118 ~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~------------  185 (315)
T KOG0279|consen  118 RQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLR------------  185 (315)
T ss_pred             ceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchh------------
Confidence            9999999999999999999888877665  788999999998  688999999999999999875432            


Q ss_pred             EecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccCCC
Q 008496          363 VDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKE  442 (563)
Q Consensus       363 ~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~  442 (563)
                                                   ..+.||++.++.++++|||.++++|+.||.+.+||++.++.+..+ .|...
T Consensus       186 -----------------------------~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl-~a~~~  235 (315)
T KOG0279|consen  186 -----------------------------TTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSL-EAFDI  235 (315)
T ss_pred             -----------------------------hccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEec-cCCCe
Confidence                                         346789999999999999999999999999999999999987765 57789


Q ss_pred             EEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCC---------CCCEEEEEEcCCCCEEEEEeCCC
Q 008496          443 IYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGH---------REPVYSLAFSPTGEYLASGSLDK  513 (563)
Q Consensus       443 i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h---------~~~i~~l~~spdg~~lasgs~dg  513 (563)
                      |.+++|+|+-         +.| .+..+..|+|||++++.++.+++..         .....+++||+||..|.+|-.|+
T Consensus       236 v~sl~fspnr---------ywL-~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~  305 (315)
T KOG0279|consen  236 VNSLCFSPNR---------YWL-CAATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDN  305 (315)
T ss_pred             EeeEEecCCc---------eeE-eeccCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCC
Confidence            9999999974         244 4445667999999999888766421         12256789999999999999999


Q ss_pred             cEEEEecC
Q 008496          514 SMHIWSLK  521 (563)
Q Consensus       514 ~v~iw~~~  521 (563)
                      .|++|.+.
T Consensus       306 ~irv~qv~  313 (315)
T KOG0279|consen  306 VIRVWQVA  313 (315)
T ss_pred             cEEEEEee
Confidence            99999875

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=5.3e-35  Score=277.12  Aligned_cols=352  Identities=23%  Similarity=0.356  Sum_probs=265.3

Q ss_pred             CCcccccccCCccc---eecCC-CceeEecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEE
Q 008496          187 PEPMDIATTSASES---FEIPN-SDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLV  262 (563)
Q Consensus       187 ~~~~~~~~~~~~~~---~~~~~-~~~~~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~  262 (563)
                      ..|+.+.+.+....   |+=|+ .....++.|..=|+|+.|||||+++||+|.||++.|||=.++...            
T Consensus       158 sRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~v------------  225 (603)
T KOG0318|consen  158 SRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKV------------  225 (603)
T ss_pred             CCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEE------------
Confidence            34555555443322   22233 234567889999999999999999999999999999986554321            


Q ss_pred             EEeeecccccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCc------------------------------------
Q 008496          263 LKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGD------------------------------------  306 (563)
Q Consensus       263 ~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~------------------------------------  306 (563)
                       ..+. ....|.+.|.+++|+||++.++|++.|.+++|||....                                    
T Consensus       226 -g~l~-~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in  303 (603)
T KOG0318|consen  226 -GELE-DSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTIN  303 (603)
T ss_pred             -EEec-CCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEE
Confidence             1111 13456788999999999999999999999999985321                                    


Q ss_pred             --------eeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEe-eecccCeEEEecCCCceEEEEeCC
Q 008496          307 --------LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQF-EFHSGPTLDVDWRNNVSFATSSTD  377 (563)
Q Consensus       307 --------~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d  377 (563)
                              ....+.+|..+|++|..+|++++|++|+.||.|.-||..++..-+.. ..|...+..+.-.....+.+++.|
T Consensus       304 ~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~D  383 (603)
T KOG0318|consen  304 YLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWD  383 (603)
T ss_pred             EecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecC
Confidence                    01234579999999999999999999999999999999877644332 456666666666665667777777


Q ss_pred             CeEEEEEcCCC------------cc-------------------eeeecCCC--------cceeEEEECCCCCEEEEEeC
Q 008496          378 NMIYVCKIGEN------------RP-------------------IKTFAGHQ--------GEVNCVKWDPTGSLLASCSD  418 (563)
Q Consensus       378 ~~i~~~~~~~~------------~~-------------------~~~~~~h~--------~~i~~~~~~~~~~~las~s~  418 (563)
                      .++++.++..+            +|                   +..++.+.        -...+++++|+++.+|.|+.
T Consensus       384 d~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~  463 (603)
T KOG0318|consen  384 DTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQ  463 (603)
T ss_pred             CeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecc
Confidence            77777755321            11                   11122222        13568999999999999999


Q ss_pred             CCcEEEEeCCCCcee--eeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEE-EecCCCCCEE
Q 008496          419 DVTAKIWNMKQDKYV--HDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLY-SLNGHREPVY  495 (563)
Q Consensus       419 dg~i~iwd~~~~~~~--~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~-~~~~h~~~i~  495 (563)
                      |+.++||.+..+...  ..+..|.++|+.++|+|++.         +||+|...+.|.+||+.+.+... .+.-|...|.
T Consensus       464 Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~---------yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~  534 (603)
T KOG0318|consen  464 DGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGA---------YLAAGDASRKVVLYDVASREVKTNRWAFHTAKIN  534 (603)
T ss_pred             cceEEEEEecCCcccceeeeecccCCceEEEECCCCc---------EEEEeccCCcEEEEEcccCceecceeeeeeeeEE
Confidence            999999999876543  24567999999999999986         89999999999999999877633 3344899999


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEecCCCe-eEEEE-ecCCCEEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496          496 SLAFSPTGEYLASGSLDKSMHIWSLKEGK-IVKTY-TGNGGIFEVCWNKEGDKIAACFANHTVCVLDFR  562 (563)
Q Consensus       496 ~l~~spdg~~lasgs~dg~v~iw~~~~~~-~~~~~-~~~~~i~~l~w~~~g~~la~~~~~~~v~v~~~~  562 (563)
                      +++|||+..++||||.|..|.||++.+-. .+..- .+..+|+.|.|-.+. .|++++.|..|.+|++-
T Consensus       535 ~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~iknAH~~gVn~v~wlde~-tvvSsG~Da~iK~W~v~  602 (603)
T KOG0318|consen  535 CVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIKNAHLGGVNSVAWLDES-TVVSSGQDANIKVWNVT  602 (603)
T ss_pred             EEEeCCCceEEEeccccceEEEEEccChhhheEeccccccCceeEEEecCc-eEEeccCcceeEEeccc
Confidence            99999999999999999999999997532 22211 234569999997654 56666689999999974

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=2.3e-37  Score=307.57  Aligned_cols=270  Identities=28%  Similarity=0.492  Sum_probs=239.5

Q ss_pred             CCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEe
Q 008496          274 SKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQF  353 (563)
Q Consensus       274 ~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~  353 (563)
                      ...|+|..|++|+.+||.|-.|..|++|.........+..       ..+   ...+=+.+.|-.+.+-|.........+
T Consensus       378 ~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~-------~~~---l~~~d~~sad~~~~~~D~~~~~~~~~L  447 (707)
T KOG0263|consen  378 YQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKD-------ASD---LSNIDTESADVDVDMLDDDSSGTSRTL  447 (707)
T ss_pred             CCcceeEeecCCcchhhccccccEEEEEecchhhhccccc-------hhh---hccccccccchhhhhccccCCceeEEe
Confidence            4679999999999999999999999999987543222221       111   112334556666778888877777889


Q ss_pred             eecccCeEEEecCCCceE-EEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCce
Q 008496          354 EFHSGPTLDVDWRNNVSF-ATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKY  432 (563)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~-~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~  432 (563)
                      ..|.+||+...+.++..| ++|+.|+++++|.+.+...+..++||..+|..+.|+|.|-+|||||.|++.++|......+
T Consensus       448 ~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~P  527 (707)
T KOG0263|consen  448 YGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKP  527 (707)
T ss_pred             ecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCc
Confidence            999999999999877655 7888999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCC
Q 008496          433 VHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLD  512 (563)
Q Consensus       433 ~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~d  512 (563)
                      .+.+.+|...+.|+.|+|+..         ++++||.|.+||+||+.+|..+..+.||.++|.+++|||+|++||+|+.|
T Consensus       528 lRifaghlsDV~cv~FHPNs~---------Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed  598 (707)
T KOG0263|consen  528 LRIFAGHLSDVDCVSFHPNSN---------YVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDED  598 (707)
T ss_pred             hhhhcccccccceEEECCccc---------ccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccC
Confidence            999999999999999999875         89999999999999999999999999999999999999999999999999


Q ss_pred             CcEEEEecCCCeeEEEEecC-CCEEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496          513 KSMHIWSLKEGKIVKTYTGN-GGIFEVCWNKEGDKIAACFANHTVCVLDFR  562 (563)
Q Consensus       513 g~v~iw~~~~~~~~~~~~~~-~~i~~l~w~~~g~~la~~~~~~~v~v~~~~  562 (563)
                      |.|+|||+.+|+++..+.++ +.|++|+|+.||..||+|+.|.+|.+||+.
T Consensus       599 ~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~  649 (707)
T KOG0263|consen  599 GLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLT  649 (707)
T ss_pred             CcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEch
Confidence            99999999999999888765 458999999999999999999999999985

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=8.7e-36  Score=278.97  Aligned_cols=277  Identities=29%  Similarity=0.594  Sum_probs=249.3

Q ss_pred             CceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEEeCC
Q 008496          216 SEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYD  295 (563)
Q Consensus       216 ~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~d  295 (563)
                      ..|++++||.+|..||||+.||.+|||+......                  .....|.++|.++.|+..|++|++++.|
T Consensus       236 kdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l~------------------~tl~~HkgPI~slKWnk~G~yilS~~vD  297 (524)
T KOG0273|consen  236 KDVTSLDWNNDGTLLATGSEDGEARIWNKDGNLI------------------STLGQHKGPIFSLKWNKKGTYILSGGVD  297 (524)
T ss_pred             CCcceEEecCCCCeEEEeecCcEEEEEecCchhh------------------hhhhccCCceEEEEEcCCCCEEEeccCC
Confidence            5799999999999999999999999999754321                  1123457899999999999999999999


Q ss_pred             CeEEEEEc-CCceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecCCC-ceEEE
Q 008496          296 GQARIWST-NGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNN-VSFAT  373 (563)
Q Consensus       296 g~i~vw~~-~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  373 (563)
                      |++.|||. .|.....+..|..+-..+.|-.+ ..|++++.|+.|+|+-+.....+.++..|.+++..+.|.+. ..+++
T Consensus       298 ~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~-~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS  376 (524)
T KOG0273|consen  298 GTTILWDAHTGTVKQQFEFHSAPALDVDWQSN-DEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLAS  376 (524)
T ss_pred             ccEEEEeccCceEEEeeeeccCCccceEEecC-ceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEE
Confidence            99999996 46677788889998788899754 56899999999999999888889999999999999999764 56789


Q ss_pred             EeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCC---------EEEEEeCCCcEEEEeCCCCceeeeecccCCCEE
Q 008496          374 SSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGS---------LLASCSDDVTAKIWNMKQDKYVHDLREHSKEIY  444 (563)
Q Consensus       374 ~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~---------~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~  444 (563)
                      |+.|+++.+|..+....+..+.+|..+|..+.|+|+|.         .+++++.|+++++||...+.+++.|..|+.+|+
T Consensus       377 ~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVy  456 (524)
T KOG0273|consen  377 CSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVY  456 (524)
T ss_pred             ecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceE
Confidence            99999999999999999999999999999999999763         689999999999999999999999999999999


Q ss_pred             EEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q 008496          445 TIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLK  521 (563)
Q Consensus       445 ~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~  521 (563)
                      +++|+|+|.         ++|+|+.||.|.||++++++.+++..+. +.|+.++|+.+|.+|..+-.|+.+++-|++
T Consensus       457 svafS~~g~---------ylAsGs~dg~V~iws~~~~~l~~s~~~~-~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr  523 (524)
T KOG0273|consen  457 SVAFSPNGR---------YLASGSLDGCVHIWSTKTGKLVKSYQGT-GGIFELCWNAAGDKLGACASDGSVCVLDLR  523 (524)
T ss_pred             EEEecCCCc---------EEEecCCCCeeEeccccchheeEeecCC-CeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence            999999986         8999999999999999999999998864 569999999999999999999999998875

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=5.2e-35  Score=321.28  Aligned_cols=289  Identities=21%  Similarity=0.419  Sum_probs=232.7

Q ss_pred             ecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECC-CCCEE
Q 008496          211 LEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG-EGTLL  289 (563)
Q Consensus       211 l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~-~g~~l  289 (563)
                      +.+|...|++++|+|++++||||+.|++|+||++............+  ..   ..     .....|.+++|++ ++.+|
T Consensus       479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~--~~---~~-----~~~~~v~~l~~~~~~~~~l  548 (793)
T PLN00181        479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYP--VV---EL-----ASRSKLSGICWNSYIKSQV  548 (793)
T ss_pred             ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccc--eE---Ee-----cccCceeeEEeccCCCCEE
Confidence            34589999999999999999999999999999975421110000000  00   01     1135689999987 57899


Q ss_pred             EEEeCCCeEEEEEcC-CceeEeeccCCCCEEEEEeCC-CCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecCC
Q 008496          290 ATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNK-KGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN  367 (563)
Q Consensus       290 ~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~  367 (563)
                      ++++.||.|++||.. +.....+.+|.+.|++++|+| ++.+|++|+.|++|++||++++.....               
T Consensus       549 as~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~---------------  613 (793)
T PLN00181        549 ASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGT---------------  613 (793)
T ss_pred             EEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEE---------------
Confidence            999999999999976 556677889999999999997 788999999999999999987643322               


Q ss_pred             CceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEEC-CCCCEEEEEeCCCcEEEEeCCCCc-eeeeecccCCCEEE
Q 008496          368 NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWD-PTGSLLASCSDDVTAKIWNMKQDK-YVHDLREHSKEIYT  445 (563)
Q Consensus       368 ~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~-~~~~~las~s~dg~i~iwd~~~~~-~~~~~~~~~~~i~~  445 (563)
                                                +..+ ..+.++.|+ +++.+|++|+.||.|++||+++.+ .+..+.+|...|.+
T Consensus       614 --------------------------~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~  666 (793)
T PLN00181        614 --------------------------IKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSY  666 (793)
T ss_pred             --------------------------EecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEE
Confidence                                      1112 357788884 579999999999999999998765 46677899999999


Q ss_pred             EEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC------CeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 008496          446 IRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL------GKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWS  519 (563)
Q Consensus       446 ~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~------~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~  519 (563)
                      +.|.+ +.         +|++++.|++|+|||++.      ..++..+.+|...+.+++|+|++.+||+|+.|+.|++|+
T Consensus       667 v~f~~-~~---------~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~  736 (793)
T PLN00181        667 VRFVD-SS---------TLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYH  736 (793)
T ss_pred             EEEeC-CC---------EEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEE
Confidence            99963 32         689999999999999974      357788999999999999999999999999999999999


Q ss_pred             cCCCeeEEEEe--------------cCCCEEEEEEcCCCCEEEEEECCCeEEEEEe
Q 008496          520 LKEGKIVKTYT--------------GNGGIFEVCWNKEGDKIAACFANHTVCVLDF  561 (563)
Q Consensus       520 ~~~~~~~~~~~--------------~~~~i~~l~w~~~g~~la~~~~~~~v~v~~~  561 (563)
                      ......+..+.              ....|.+++|+++|+.|++|..+|.|.||++
T Consensus       737 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~  792 (793)
T PLN00181        737 KAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM  792 (793)
T ss_pred             CCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence            87665443332              1234889999999999999999999999986

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=6.1e-35  Score=282.40  Aligned_cols=285  Identities=36%  Similarity=0.621  Sum_probs=250.7

Q ss_pred             eEecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCE
Q 008496          209 TILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTL  288 (563)
Q Consensus       209 ~~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~  288 (563)
                      ..+++|..+|++++|+|++++|++|+.|+.+++|++.++..             ....    ..+...+..+.|++++++
T Consensus         3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~-------------~~~~----~~~~~~i~~~~~~~~~~~   65 (289)
T cd00200           3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGEL-------------LRTL----KGHTGPVRDVAASADGTY   65 (289)
T ss_pred             hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCc-------------EEEE----ecCCcceeEEEECCCCCE
Confidence            35678999999999999999999999999999999875431             0111    123456889999999999


Q ss_pred             EEEEeCCCeEEEEEcCC-ceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecCC
Q 008496          289 LATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN  367 (563)
Q Consensus       289 l~sg~~dg~i~vw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~  367 (563)
                      |++++.+|.+++|+... .....+..|...|.++.|++++.++++++.|+.+.+||+.+++....+..|...+..+.|.+
T Consensus        66 l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~  145 (289)
T cd00200          66 LASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSP  145 (289)
T ss_pred             EEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcC
Confidence            99999999999999875 56667888999999999999988888888899999999998888888887888899999987


Q ss_pred             CceEEEEe-CCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEEE
Q 008496          368 NVSFATSS-TDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTI  446 (563)
Q Consensus       368 ~~~~~~~~-~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~  446 (563)
                      +..++.++ .++.+++|++...+++..+..|...+.+++|+|+++.+++++.|+.+++||++.++.+..+..|...+.++
T Consensus       146 ~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~  225 (289)
T cd00200         146 DGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSV  225 (289)
T ss_pred             cCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEE
Confidence            65555444 49999999999888888899999999999999999999999999999999999988888888899999999


Q ss_pred             EEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 008496          447 RWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWS  519 (563)
Q Consensus       447 ~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~  519 (563)
                      .|+|++.         ++++++.||.|++||+.+++.+..+..|..+|.+++|+|++.+|++++.||.|++|+
T Consensus       226 ~~~~~~~---------~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~  289 (289)
T cd00200         226 AFSPDGY---------LLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD  289 (289)
T ss_pred             EEcCCCc---------EEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence            9999743         677888899999999999999999999999999999999999999999999999996

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=1.8e-35  Score=262.17  Aligned_cols=285  Identities=27%  Similarity=0.465  Sum_probs=241.9

Q ss_pred             ceeEecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCC
Q 008496          207 DVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG  286 (563)
Q Consensus       207 ~~~~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g  286 (563)
                      ++..+.||+++|+++.|+|+|..|||||.|..|.+|++.....         +...+       ..|++.|..+.|.+|+
T Consensus        39 p~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdce---------N~~~l-------kgHsgAVM~l~~~~d~  102 (338)
T KOG0265|consen   39 PIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCE---------NFWVL-------KGHSGAVMELHGMRDG  102 (338)
T ss_pred             hhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEecccccc---------ceeee-------ccccceeEeeeeccCC
Confidence            3457889999999999999999999999999999999764321         11122       2567889999999999


Q ss_pred             CEEEEEeCCCeEEEEEcC-CceeEeeccCCCCEEEEEeCCCCCE-EEEeeCCCcEEEEECCCCceeEEeeecccCeEEEe
Q 008496          287 TLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDY-LLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVD  364 (563)
Q Consensus       287 ~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~-l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~  364 (563)
                      +.+++++.|.+++.||.. |+....+.+|.+-|.++.-+.-|.. +.|++.|+++++||+++...++.+.. ..++.++.
T Consensus       103 s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~-kyqltAv~  181 (338)
T KOG0265|consen  103 SHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFEN-KYQLTAVG  181 (338)
T ss_pred             CEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhcccc-ceeEEEEE
Confidence            999999999999999975 6777788999999999885555544 56888999999999998887776532 23567788


Q ss_pred             cCCC-ceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCC----Cceeeeeccc
Q 008496          365 WRNN-VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQ----DKYVHDLREH  439 (563)
Q Consensus       365 ~~~~-~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~----~~~~~~~~~~  439 (563)
                      |.+. ....+++-|+.|.+|+++.+....++.||...|+.+..+|+|.++.+-+.|.++++||++.    .+++..+.+|
T Consensus       182 f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~  261 (338)
T KOG0265|consen  182 FKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGH  261 (338)
T ss_pred             ecccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecc
Confidence            8654 5678899999999999999999999999999999999999999999999999999999874    3445555554


Q ss_pred             C----CCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcE
Q 008496          440 S----KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSM  515 (563)
Q Consensus       440 ~----~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v  515 (563)
                      .    .....++|+|++.         .+.+|+.|..+++||......++.+.||.+.|++++|+|...+|.+++.|++|
T Consensus       262 ~hnfeknlL~cswsp~~~---------~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i  332 (338)
T KOG0265|consen  262 IHNFEKNLLKCSWSPNGT---------KITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTI  332 (338)
T ss_pred             hhhhhhhcceeeccCCCC---------ccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCcee
Confidence            3    3346778999886         57889999999999999889999999999999999999999999999999998


Q ss_pred             EE
Q 008496          516 HI  517 (563)
Q Consensus       516 ~i  517 (563)
                      ++
T Consensus       333 ~l  334 (338)
T KOG0265|consen  333 YL  334 (338)
T ss_pred             Ee
Confidence            76

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=9.7e-37  Score=286.51  Aligned_cols=296  Identities=26%  Similarity=0.451  Sum_probs=251.2

Q ss_pred             ccceecCCCceeEecCCCCceEEEEECC-CCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCC
Q 008496          198 SESFEIPNSDVTILEGHTSEVCACAWSP-AGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKD  276 (563)
Q Consensus       198 ~~~~~~~~~~~~~l~~h~~~V~~~~~sp-~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (563)
                      ...+.+|...+.++.||+..|+++.|.| .+.+|++||.|+.|+||++.+...            .++    ....|..+
T Consensus       197 ~~rc~~Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~------------~lr----tf~gH~k~  260 (503)
T KOG0282|consen  197 EERCYLPKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRR------------CLR----TFKGHRKP  260 (503)
T ss_pred             cceeeccHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcc------------eeh----hhhcchhh
Confidence            4567789999999999999999999999 799999999999999999875210            122    23346788


Q ss_pred             eEEEEECCCCCEEEEEeCCCeEEEEEcCC-ceeEeeccCCCCEEEEEeCCCC-CEEEEeeCCCcEEEEECCCCceeEEee
Q 008496          277 VTTLDWNGEGTLLATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKG-DYLLTGSCDKTAIVWDVKTEEWKQQFE  354 (563)
Q Consensus       277 V~~l~~s~~g~~l~sg~~dg~i~vw~~~~-~~~~~~~~h~~~V~~l~~~~~~-~~l~s~s~D~~v~iwd~~~~~~~~~~~  354 (563)
                      |..++|+.+|..|+++++|+.+++||++. +....+ .....+++++|+|++ +.|++|+.|+.|+.||++++++++.+.
T Consensus       261 Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f-~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd  339 (503)
T KOG0282|consen  261 VRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRF-HLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYD  339 (503)
T ss_pred             hhhhhccccCCeeeeeecceeeeeeccccceEEEEE-ecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHH
Confidence            99999999999999999999999999874 444444 234567999999999 889999999999999999999999999


Q ss_pred             ecccCeEEEecCC-CceEEEEeCCCeEEEEEcCCCcceeeec-CCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCce
Q 008496          355 FHSGPTLDVDWRN-NVSFATSSTDNMIYVCKIGENRPIKTFA-GHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKY  432 (563)
Q Consensus       355 ~~~~~~~~~~~~~-~~~~~~~~~d~~i~~~~~~~~~~~~~~~-~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~  432 (563)
                      .|.+++.++.|.+ +..|++++.|+++++|+.+...+++... .+.....|+..+|++++++.-+.|+.|.|+.+...-.
T Consensus       340 ~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r  419 (503)
T KOG0282|consen  340 RHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFR  419 (503)
T ss_pred             hhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccc
Confidence            9999999999864 5789999999999999999887776543 2344677899999999999999999999998653221


Q ss_pred             ---eeeecccCC--CEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCC-CEE
Q 008496          433 ---VHDLREHSK--EIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTG-EYL  506 (563)
Q Consensus       433 ---~~~~~~~~~--~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg-~~l  506 (563)
                         -..+.+|..  --..+.|||+|.         +|++|+.||.+.+||.++.+.+..+.+|..++..+.|+|.. ..+
T Consensus       420 ~nkkK~feGh~vaGys~~v~fSpDG~---------~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skv  490 (503)
T KOG0282|consen  420 LNKKKRFEGHSVAGYSCQVDFSPDGR---------TLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKV  490 (503)
T ss_pred             cCHhhhhcceeccCceeeEEEcCCCC---------eEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCccee
Confidence               234556643  345678999997         89999999999999999999999999999999999999975 689


Q ss_pred             EEEeCCCcEEEEe
Q 008496          507 ASGSLDKSMHIWS  519 (563)
Q Consensus       507 asgs~dg~v~iw~  519 (563)
                      |||+.||.|++|+
T Consensus       491 at~~w~G~Ikiwd  503 (503)
T KOG0282|consen  491 ATCGWDGLIKIWD  503 (503)
T ss_pred             EecccCceeEecC
Confidence            9999999999996

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=5e-35  Score=299.25  Aligned_cols=289  Identities=29%  Similarity=0.546  Sum_probs=248.0

Q ss_pred             eeEecCC-CCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCC
Q 008496          208 VTILEGH-TSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG  286 (563)
Q Consensus       208 ~~~l~~h-~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g  286 (563)
                      ...+.+| ...|.++.|+|+|+.|++++.|+.+++|+.......           .+.    ....+...|..++|+|+|
T Consensus       151 ~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~-----------~~~----~l~~h~~~v~~~~fs~d~  215 (456)
T KOG0266|consen  151 EQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSN-----------LLR----ELSGHTRGVSDVAFSPDG  215 (456)
T ss_pred             eeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccch-----------hhc----cccccccceeeeEECCCC
Confidence            3445444 789999999999999999999999999998543310           001    113456789999999999


Q ss_pred             CEEEEEeCCCeEEEEEc-CC-ceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEe
Q 008496          287 TLLATGSYDGQARIWST-NG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVD  364 (563)
Q Consensus       287 ~~l~sg~~dg~i~vw~~-~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~  364 (563)
                      +++++|+.|++++||+. .. ....++.+|...|++++|+|+|+.+++|+.|++|+|||++++++               
T Consensus       216 ~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~---------------  280 (456)
T KOG0266|consen  216 SYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGEC---------------  280 (456)
T ss_pred             cEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeE---------------
Confidence            99999999999999998 43 56778999999999999999999999999999999999987653               


Q ss_pred             cCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCc--eeeeecccCCC
Q 008496          365 WRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDK--YVHDLREHSKE  442 (563)
Q Consensus       365 ~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~--~~~~~~~~~~~  442 (563)
                                                +..+.+|.+.|++++|++++++|++++.|+.|+|||+.++.  ++..+..+...
T Consensus       281 --------------------------~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~  334 (456)
T KOG0266|consen  281 --------------------------VRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENS  334 (456)
T ss_pred             --------------------------EEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCC
Confidence                                      34567899999999999999999999999999999999998  56777766555


Q ss_pred             --EEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCC---EEEEEEcCCCCEEEEEeCCCcEEE
Q 008496          443 --IYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREP---VYSLAFSPTGEYLASGSLDKSMHI  517 (563)
Q Consensus       443 --i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~---i~~l~~spdg~~lasgs~dg~v~i  517 (563)
                        +++++|+|++.         ++++++.|+.+++||+..+.++....+|...   +.+..+++.|.++.+|+.|+.|.+
T Consensus       335 ~~~~~~~fsp~~~---------~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~  405 (456)
T KOG0266|consen  335 APVTSVQFSPNGK---------YLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYV  405 (456)
T ss_pred             CceeEEEECCCCc---------EEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEE
Confidence              99999999886         7899999999999999999999999988764   455567889999999999999999


Q ss_pred             EecCCCeeEEEEecC--CCEEEEEEcCCCCEEEEEE--CCCeEEEEEe
Q 008496          518 WSLKEGKIVKTYTGN--GGIFEVCWNKEGDKIAACF--ANHTVCVLDF  561 (563)
Q Consensus       518 w~~~~~~~~~~~~~~--~~i~~l~w~~~g~~la~~~--~~~~v~v~~~  561 (563)
                      |++.++..+..+.++  ..+..++|++..+.++++.  .|+.+.+|.-
T Consensus       406 ~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~  453 (456)
T KOG0266|consen  406 WDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKY  453 (456)
T ss_pred             EeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecC
Confidence            999998888888776  6688999999999999987  6788888853

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=7.3e-34  Score=274.83  Aligned_cols=280  Identities=36%  Similarity=0.627  Sum_probs=250.8

Q ss_pred             cCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCC-ceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCcee
Q 008496          272 EKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWK  350 (563)
Q Consensus       272 ~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~  350 (563)
                      .|...|++++|+|++++|++++.||.+++|+... .....+..|..++..+.|+|++++|++++.|+.+++||+.+++..
T Consensus         7 ~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~   86 (289)
T cd00200           7 GHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECV   86 (289)
T ss_pred             ccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccce
Confidence            3467899999999999999999999999999864 455677889999999999999999999999999999999988778


Q ss_pred             EEeeecccCeEEEecCCCceE-EEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCC
Q 008496          351 QQFEFHSGPTLDVDWRNNVSF-ATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQ  429 (563)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~-~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~  429 (563)
                      ..+..+...+.++.|..+..+ ++++.++.+++|++...+++..+..|...+.+++|+|++.++++++.|+.|++||+++
T Consensus        87 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~  166 (289)
T cd00200          87 RTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRT  166 (289)
T ss_pred             EEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccc
Confidence            888888888999999876544 4555599999999998888888889999999999999999999998899999999998


Q ss_pred             CceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEE
Q 008496          430 DKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASG  509 (563)
Q Consensus       430 ~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasg  509 (563)
                      ++.+..+..|...+.++.|+|++.         .+++++.|+.|++||++.++.+..+..|..+|.+++|+|++.+++++
T Consensus       167 ~~~~~~~~~~~~~i~~~~~~~~~~---------~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  237 (289)
T cd00200         167 GKCVATLTGHTGEVNSVAFSPDGE---------KLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASG  237 (289)
T ss_pred             cccceeEecCccccceEEECCCcC---------EEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEE
Confidence            888888888988999999999874         57777889999999999999988888899999999999999999999


Q ss_pred             eCCCcEEEEecCCCeeEEEEecC-CCEEEEEEcCCCCEEEEEECCCeEEEEE
Q 008496          510 SLDKSMHIWSLKEGKIVKTYTGN-GGIFEVCWNKEGDKIAACFANHTVCVLD  560 (563)
Q Consensus       510 s~dg~v~iw~~~~~~~~~~~~~~-~~i~~l~w~~~g~~la~~~~~~~v~v~~  560 (563)
                      +.||.|++|++.+++.+..+..+ ..|.+++|+++|+.|++++.|+.+.||+
T Consensus       238 ~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~  289 (289)
T cd00200         238 SEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD  289 (289)
T ss_pred             cCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence            98999999999998888877653 4689999999999999999999999986

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=1.1e-36  Score=274.40  Aligned_cols=268  Identities=28%  Similarity=0.521  Sum_probs=233.5

Q ss_pred             CCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCC-ceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeE
Q 008496          273 KSKDVTTLDWNGEGTLLATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQ  351 (563)
Q Consensus       273 ~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~  351 (563)
                      .++.|+|+.+.  ...+++|..|.+|+|||.+. .....+.+|+++|.|+.|..  ..+++||+|.+|++||+++++.++
T Consensus       196 ~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~--rviisGSSDsTvrvWDv~tge~l~  271 (499)
T KOG0281|consen  196 NSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDE--RVIVSGSSDSTVRVWDVNTGEPLN  271 (499)
T ss_pred             cCCceEEEEec--chhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeeccc--eEEEecCCCceEEEEeccCCchhh
Confidence            46789999884  56899999999999999875 45567899999999998854  589999999999999999999999


Q ss_pred             EeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcc---eeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCC
Q 008496          352 QFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRP---IKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMK  428 (563)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~---~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~  428 (563)
                      ++..|...++.+.+.++ .+++|+.|.++.+|++.....   .+.+.||...|+.+.|+  .++++++|.|.+|++|++.
T Consensus       272 tlihHceaVLhlrf~ng-~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~s  348 (499)
T KOG0281|consen  272 TLIHHCEAVLHLRFSNG-YMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTS  348 (499)
T ss_pred             HHhhhcceeEEEEEeCC-EEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEecc
Confidence            99999999999888654 578999999999999977543   45678999999999995  5699999999999999999


Q ss_pred             CCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEE
Q 008496          429 QDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLAS  508 (563)
Q Consensus       429 ~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~las  508 (563)
                      +..++.++.+|...|.|+.+..           .++++||.|.+||+||+..|.++..+.||..-|.++.|  |.+.|++
T Consensus       349 t~efvRtl~gHkRGIAClQYr~-----------rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRF--d~krIVS  415 (499)
T KOG0281|consen  349 TCEFVRTLNGHKRGIACLQYRD-----------RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVS  415 (499)
T ss_pred             ceeeehhhhcccccceehhccC-----------eEEEecCCCceEEEEeccccHHHHHHhchHHhhhheee--cCceeee
Confidence            9999999999999999998743           37899999999999999999999999999999999999  5679999


Q ss_pred             EeCCCcEEEEecCCCeeE---------EEE-ecCCCEEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496          509 GSLDKSMHIWSLKEGKIV---------KTY-TGNGGIFEVCWNKEGDKIAACFANHTVCVLDFR  562 (563)
Q Consensus       509 gs~dg~v~iw~~~~~~~~---------~~~-~~~~~i~~l~w~~~g~~la~~~~~~~v~v~~~~  562 (563)
                      |+.||+|+|||+..+.-.         .+. ...+.|+.|.|+  --.+++++.+.+|-||||-
T Consensus       416 GaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD--~fqIvsssHddtILiWdFl  477 (499)
T KOG0281|consen  416 GAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFD--EFQIISSSHDDTILIWDFL  477 (499)
T ss_pred             ccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeec--ceEEEeccCCCeEEEEEcC
Confidence            999999999999876432         222 234579999985  4578888899999999983

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2e-35  Score=272.00  Aligned_cols=301  Identities=26%  Similarity=0.391  Sum_probs=239.0

Q ss_pred             ceecCCCceeEecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEE
Q 008496          200 SFEIPNSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTT  279 (563)
Q Consensus       200 ~~~~~~~~~~~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~  279 (563)
                      ..++|.....+|..|+++|.-+.||++|++||||+.|.++.||.+.....           ..+++   ...+|..+|..
T Consensus       209 ~~qip~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~-----------~kl~~---tlvgh~~~V~y  274 (519)
T KOG0293|consen  209 RLQIPSQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVH-----------FKLKK---TLVGHSQPVSY  274 (519)
T ss_pred             cccCCchhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcc-----------eeeee---eeecccCceEE
Confidence            34677778889999999999999999999999999999999999754221           11111   22346788999


Q ss_pred             EEECCCCCEEEEEeCCCeEEEEEcCCc-eeEee-ccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecc
Q 008496          280 LDWNGEGTLLATGSYDGQARIWSTNGD-LKCTL-SKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHS  357 (563)
Q Consensus       280 l~~s~~g~~l~sg~~dg~i~vw~~~~~-~~~~~-~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~  357 (563)
                      +.||||.++|++|+.+..+++||+... ....+ .+|...+.+++|.|||..+++|+.|+++..||+.... ...++...
T Consensus       275 i~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~-~~~W~gvr  353 (519)
T KOG0293|consen  275 IMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNI-LGNWEGVR  353 (519)
T ss_pred             EEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcch-hhcccccc
Confidence            999999999999999999999998744 33322 2356889999999999999999999999999986543 33333322


Q ss_pred             -cCeEEEecCC-CceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeee
Q 008496          358 -GPTLDVDWRN-NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHD  435 (563)
Q Consensus       358 -~~~~~~~~~~-~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~  435 (563)
                       ..+.++.... +..+++...|..|++++......+.... -..+|++++.|.+++++.+.-.+..+++||+...+.+..
T Consensus       354 ~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lis-e~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~k  432 (519)
T KOG0293|consen  354 DPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLIS-EEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRK  432 (519)
T ss_pred             cceeEEEEEcCCCcEEEEEecccceeeechhhhhhhcccc-ccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHH
Confidence             3366666544 3455666788889988876544433222 345799999999999999999999999999998888888


Q ss_pred             ecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCC-CEEEEEeCCCc
Q 008496          436 LREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTG-EYLASGSLDKS  514 (563)
Q Consensus       436 ~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg-~~lasgs~dg~  514 (563)
                      +.+|...-+-|.-.-.|.      +..+++|||.|+.|+||+..+|+++.++.||...|++++|+|.. .++|+||.||+
T Consensus       433 Y~Ghkq~~fiIrSCFgg~------~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgt  506 (519)
T KOG0293|consen  433 YFGHKQGHFIIRSCFGGG------NDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGT  506 (519)
T ss_pred             hhcccccceEEEeccCCC------CcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCe
Confidence            889987665554333332      22489999999999999999999999999999999999999965 78899999999


Q ss_pred             EEEEecCC
Q 008496          515 MHIWSLKE  522 (563)
Q Consensus       515 v~iw~~~~  522 (563)
                      |+||....
T Consensus       507 IRIWg~~~  514 (519)
T KOG0293|consen  507 IRIWGPSD  514 (519)
T ss_pred             EEEecCCc
Confidence            99998753

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=1.1e-34  Score=263.72  Aligned_cols=286  Identities=22%  Similarity=0.382  Sum_probs=232.7

Q ss_pred             eeEecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCC
Q 008496          208 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT  287 (563)
Q Consensus       208 ~~~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~  287 (563)
                      ...+.+|++.|+++.||.+|.+||||+.+|.++||+..++....          .+       ......+.-|.|+|.+.
T Consensus        99 ~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~----------~~-------~~e~~dieWl~WHp~a~  161 (399)
T KOG0296|consen   99 AGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQW----------KL-------DQEVEDIEWLKWHPRAH  161 (399)
T ss_pred             eeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEE----------Ee-------ecccCceEEEEeccccc
Confidence            45678999999999999999999999999999999987654211          11       11245688899999999


Q ss_pred             EEEEEeCCCeEEEEEcCC-ceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecc-cCeEEEec
Q 008496          288 LLATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHS-GPTLDVDW  365 (563)
Q Consensus       288 ~l~sg~~dg~i~vw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~-~~~~~~~~  365 (563)
                      .|+.|+.||.+.+|.... .....+.+|..++++-.|.|+|++++++..||+|++||+.++.....+.... .....+..
T Consensus       162 illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~  241 (399)
T KOG0296|consen  162 ILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISL  241 (399)
T ss_pred             EEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCcccc
Confidence            999999999999999876 6777899999999999999999999999999999999999997766554211 11122222


Q ss_pred             C-CCceEEEEeCCCeEEEEEcCCCcceeeec--------CCCcceeEEE---ECCCCCEEEEEeCCCcEEEEeCCCCcee
Q 008496          366 R-NNVSFATSSTDNMIYVCKIGENRPIKTFA--------GHQGEVNCVK---WDPTGSLLASCSDDVTAKIWNMKQDKYV  433 (563)
Q Consensus       366 ~-~~~~~~~~~~d~~i~~~~~~~~~~~~~~~--------~h~~~i~~~~---~~~~~~~las~s~dg~i~iwd~~~~~~~  433 (563)
                      . ....+..|+.++.+++.....++.+..+.        ++...+.|+.   |+..-++.|+|+-||+|.|||+...++.
T Consensus       242 ~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R  321 (399)
T KOG0296|consen  242 NLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLR  321 (399)
T ss_pred             ccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhh
Confidence            2 22345667777778877777776665555        3444555554   4555678899999999999999887765


Q ss_pred             eeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCC
Q 008496          434 HDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDK  513 (563)
Q Consensus       434 ~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg  513 (563)
                      +. -.|...|+.+.|.++.          +|++++.||.|++||.++|++++++.||..+|.+++++|++++++|+|.|+
T Consensus       322 ~~-c~he~~V~~l~w~~t~----------~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~  390 (399)
T KOG0296|consen  322 HI-CEHEDGVTKLKWLNTD----------YLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDN  390 (399)
T ss_pred             ee-ccCCCceEEEEEcCcc----------hheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCC
Confidence            54 4588889999998832          788999999999999999999999999999999999999999999999999


Q ss_pred             cEEEEecC
Q 008496          514 SMHIWSLK  521 (563)
Q Consensus       514 ~v~iw~~~  521 (563)
                      +.+||++.
T Consensus       391 ~a~VF~v~  398 (399)
T KOG0296|consen  391 TALVFEVP  398 (399)
T ss_pred             eEEEEecC
Confidence            99999874

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4.7e-34  Score=275.59  Aligned_cols=281  Identities=26%  Similarity=0.388  Sum_probs=246.4

Q ss_pred             EecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEE
Q 008496          210 ILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLL  289 (563)
Q Consensus       210 ~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l  289 (563)
                      .+..|+..|-++.|||...+++++=..|.+.||+..+......             +    ....-+|.+..|-+.-+++
T Consensus         8 k~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVks-------------f----eV~~~PvRa~kfiaRknWi   70 (794)
T KOG0276|consen    8 KFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKS-------------F----EVSEVPVRAAKFIARKNWI   70 (794)
T ss_pred             HhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeee-------------e----eecccchhhheeeeccceE
Confidence            4556889999999999999999999999999999887543211             1    1123568888888888999


Q ss_pred             EEEeCCCeEEEEEcC-CceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCC-ceeEEeeecccCeEEEecC-
Q 008496          290 ATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTE-EWKQQFEFHSGPTLDVDWR-  366 (563)
Q Consensus       290 ~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~-  366 (563)
                      ++|+.|..||||+.+ +..+..|..|..-|.+++.||.-.+++|+|.|.+|++||...+ .+.++|+.|.--++++.+. 
T Consensus        71 v~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnP  150 (794)
T KOG0276|consen   71 VTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNP  150 (794)
T ss_pred             EEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecC
Confidence            999999999999986 4677889999999999999999999999999999999998653 5678899999888888775 


Q ss_pred             -CCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCC--CCEEEEEeCCCcEEEEeCCCCceeeeecccCCCE
Q 008496          367 -NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT--GSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEI  443 (563)
Q Consensus       367 -~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~--~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i  443 (563)
                       +...|++++.|++|.+|.+++..|..++.||...|+|+++-+-  ..+|+||++|.+|+|||..+..|+.++.+|...|
T Consensus       151 kD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nv  230 (794)
T KOG0276|consen  151 KDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNV  230 (794)
T ss_pred             CCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccc
Confidence             5678999999999999999999999999999999999999764  4799999999999999999999999999999999


Q ss_pred             EEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEE
Q 008496          444 YTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMH  516 (563)
Q Consensus       444 ~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~  516 (563)
                      ..+.|.|.-+         +++|||.||++|||+..+-++..++.-....|+||+-.+.+..++.|...|.|.
T Consensus       231 s~v~fhp~lp---------iiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~  294 (794)
T KOG0276|consen  231 SFVFFHPELP---------IIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVT  294 (794)
T ss_pred             eEEEecCCCc---------EEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEE
Confidence            9999999764         899999999999999988777777776677899999999988899988887664

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=9e-34  Score=242.90  Aligned_cols=242  Identities=24%  Similarity=0.459  Sum_probs=219.5

Q ss_pred             eeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecC-CCceEEEEeCCCeEEEEEc
Q 008496          307 LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR-NNVSFATSSTDNMIYVCKI  385 (563)
Q Consensus       307 ~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~i~~~~~  385 (563)
                      ....+.+|+++|..++|+-+|+|.++|+.|++|++|++..+.+++++..|...++++... ++..|++|+.|..+.+||+
T Consensus         9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV   88 (307)
T KOG0316|consen    9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDV   88 (307)
T ss_pred             hceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEc
Confidence            345678999999999999999999999999999999999999999999999999998764 6678999999999999999


Q ss_pred             CCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCC--ceeeeecccCCCEEEEEEccCCCCCCCCCCcEE
Q 008496          386 GENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD--KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLI  463 (563)
Q Consensus       386 ~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~--~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~  463 (563)
                      .+++.++.|+||.+.|+.++|+.+...+++||.|.++++||.++.  ++++.+......|.++.....           .
T Consensus        89 ~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~h-----------e  157 (307)
T KOG0316|consen   89 NTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEH-----------E  157 (307)
T ss_pred             ccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEeccc-----------E
Confidence            999999999999999999999999999999999999999998754  567777777788888877542           5


Q ss_pred             EEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEecCCCE---EEEEE
Q 008496          464 LASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGI---FEVCW  540 (563)
Q Consensus       464 l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~~~~i---~~l~w  540 (563)
                      +++||.||++|.||++.|+......+|  ||++++||+||+....++.|++|++.|-.+|++++.|.++...   .+.++
T Consensus       158 IvaGS~DGtvRtydiR~G~l~sDy~g~--pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l  235 (307)
T KOG0316|consen  158 IVAGSVDGTVRTYDIRKGTLSSDYFGH--PITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCL  235 (307)
T ss_pred             EEeeccCCcEEEEEeecceeehhhcCC--cceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeee
Confidence            889999999999999999987666655  8999999999999999999999999999999999999886432   47889


Q ss_pred             cCCCCEEEEEECCCeEEEEEe
Q 008496          541 NKEGDKIAACFANHTVCVLDF  561 (563)
Q Consensus       541 ~~~g~~la~~~~~~~v~v~~~  561 (563)
                      +....+++.|+.||.|.+||+
T Consensus       236 ~qsdthV~sgSEDG~Vy~wdL  256 (307)
T KOG0316|consen  236 NQSDTHVFSGSEDGKVYFWDL  256 (307)
T ss_pred             cccceeEEeccCCceEEEEEe
Confidence            999999999999999999997

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.8e-33  Score=271.60  Aligned_cols=279  Identities=27%  Similarity=0.390  Sum_probs=252.6

Q ss_pred             CCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCc-eeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeE
Q 008496          273 KSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGD-LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQ  351 (563)
Q Consensus       273 ~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~-~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~  351 (563)
                      ++..|.+++++|...+++++-++|.+.||+.+.+ ....+.-..-||.+.+|-+.-+++++|+.|..|+||+.++++.+.
T Consensus        12 rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~   91 (794)
T KOG0276|consen   12 RSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVK   91 (794)
T ss_pred             cCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccceeeE
Confidence            4677999999999999999999999999998754 556677778899999999999999999999999999999999999


Q ss_pred             EeeecccCeEEEecCCC-ceEEEEeCCCeEEEEEcCCC-cceeeecCCCcceeEEEECC-CCCEEEEEeCCCcEEEEeCC
Q 008496          352 QFEFHSGPTLDVDWRNN-VSFATSSTDNMIYVCKIGEN-RPIKTFAGHQGEVNCVKWDP-TGSLLASCSDDVTAKIWNMK  428 (563)
Q Consensus       352 ~~~~~~~~~~~~~~~~~-~~~~~~~~d~~i~~~~~~~~-~~~~~~~~h~~~i~~~~~~~-~~~~las~s~dg~i~iwd~~  428 (563)
                      +|+.|..-+.++.-++. -.+++++.|.+|.+|+.... .+.++|.||...|.+++|+| |.+.+||||-|++|+||.+.
T Consensus        92 ~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslg  171 (794)
T KOG0276|consen   92 TFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLG  171 (794)
T ss_pred             EeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcC
Confidence            99999999988887665 45678889999999998765 56789999999999999999 46789999999999999999


Q ss_pred             CCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEE
Q 008496          429 QDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLAS  508 (563)
Q Consensus       429 ~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~las  508 (563)
                      +..+..++.+|...|.++.|-+.|.       +.+|+||+.|.+|+|||..+..|+.++.||...|..+.|+|.-..++|
T Consensus       172 s~~~nfTl~gHekGVN~Vdyy~~gd-------kpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiis  244 (794)
T KOG0276|consen  172 SPHPNFTLEGHEKGVNCVDYYTGGD-------KPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIIS  244 (794)
T ss_pred             CCCCceeeeccccCcceEEeccCCC-------cceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEE
Confidence            9999999999999999999998764       348999999999999999999999999999999999999999999999


Q ss_pred             EeCCCcEEEEecCCCeeEEEEe-cCCCEEEEEEcCCCCEEEEEECCCeEEE
Q 008496          509 GSLDKSMHIWSLKEGKIVKTYT-GNGGIFEVCWNKEGDKIAACFANHTVCV  558 (563)
Q Consensus       509 gs~dg~v~iw~~~~~~~~~~~~-~~~~i~~l~w~~~g~~la~~~~~~~v~v  558 (563)
                      ||.||+|+||+..+.++.+++. +-+.+++++-.+.+.++|+|+.+|.+.|
T Consensus       245 gsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v  295 (794)
T KOG0276|consen  245 GSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTV  295 (794)
T ss_pred             ecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEEE
Confidence            9999999999999988877764 3467899999999999999999987754

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=100.00  E-value=3.7e-33  Score=263.87  Aligned_cols=304  Identities=24%  Similarity=0.331  Sum_probs=238.5

Q ss_pred             ceecCCCceeEecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEE
Q 008496          200 SFEIPNSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTT  279 (563)
Q Consensus       200 ~~~~~~~~~~~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~  279 (563)
                      ...||...-..|.+|+..|.++++.|.|..|+|||.|.+|++||+.....            .+++++.........|.+
T Consensus       152 ~~~IP~shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMda------------s~~~fr~l~P~E~h~i~s  219 (641)
T KOG0772|consen  152 IKLIPGSHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDA------------SMRSFRQLQPCETHQINS  219 (641)
T ss_pred             hhcCCccceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccc------------cchhhhccCcccccccce
Confidence            45688888899999999999999999999999999999999999975321            112222222334567999


Q ss_pred             EEECCCCCEEEEEeCCCeEEEEEcCCceeEee-------------ccCCCCEEEEEeCCCC-CEEEEeeCCCcEEEEECC
Q 008496          280 LDWNGEGTLLATGSYDGQARIWSTNGDLKCTL-------------SKHKGPIFSLKWNKKG-DYLLTGSCDKTAIVWDVK  345 (563)
Q Consensus       280 l~~s~~g~~l~sg~~dg~i~vw~~~~~~~~~~-------------~~h~~~V~~l~~~~~~-~~l~s~s~D~~v~iwd~~  345 (563)
                      +.|++.|..|++.+....++|+|.+|.....+             .+|...+++.+|+|.. ..|+|++.||++++||+.
T Consensus       220 l~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~  299 (641)
T KOG0772|consen  220 LQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVN  299 (641)
T ss_pred             eeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecC
Confidence            99999999999999999999999988654432             5799999999999987 468999999999999987


Q ss_pred             CCceeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEE
Q 008496          346 TEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIW  425 (563)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iw  425 (563)
                      ..+-..+.                             +..      +...+..-.+++++|+|+|++||+|+.||.|.+|
T Consensus       300 ~~k~q~qV-----------------------------ik~------k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W  344 (641)
T KOG0772|consen  300 NTKSQLQV-----------------------------IKT------KPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIW  344 (641)
T ss_pred             CchhheeE-----------------------------Eee------ccCCCcccCceeeecCCCcchhhhcccCCceeee
Confidence            64321111                             000      0011233357889999999999999999999999


Q ss_pred             eCCCCc--eee-eecccCC--CEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC-eEEEEecCCC--CCEEEE
Q 008496          426 NMKQDK--YVH-DLREHSK--EIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG-KLLYSLNGHR--EPVYSL  497 (563)
Q Consensus       426 d~~~~~--~~~-~~~~~~~--~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~h~--~~i~~l  497 (563)
                      +.....  +.. .-.+|..  .|++|.|+++|.         +|+|-+.|+++++||++.. +++.+..+..  -+-+.+
T Consensus       345 ~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~---------~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc  415 (641)
T KOG0772|consen  345 DKGSRTVRPVMKVKDAHLPGQDITSISFSYDGN---------YLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDC  415 (641)
T ss_pred             ecCCcccccceEeeeccCCCCceeEEEeccccc---------hhhhccCCCceeeeeccccccchhhhcCCCccCCCCcc
Confidence            975432  222 2246766  899999999986         7999999999999999864 4555554432  345789


Q ss_pred             EEcCCCCEEEEEeC------CCcEEEEecCCCeeEEEEec-CCCEEEEEEcCCCCEEEEEECCCeEEEE
Q 008496          498 AFSPTGEYLASGSL------DKSMHIWSLKEGKIVKTYTG-NGGIFEVCWNKEGDKIAACFANHTVCVL  559 (563)
Q Consensus       498 ~~spdg~~lasgs~------dg~v~iw~~~~~~~~~~~~~-~~~i~~l~w~~~g~~la~~~~~~~v~v~  559 (563)
                      +||||.++|++|+.      .|.+.+||..+...+..+.- ...|..+.|+|.=+.|.+|++||++.||
T Consensus       416 ~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vy  484 (641)
T KOG0772|consen  416 CFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVY  484 (641)
T ss_pred             ccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeecCCCceEEE
Confidence            99999999999864      47899999998887766543 4567889999999999999999999886

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=100.00  E-value=1e-32  Score=240.08  Aligned_cols=274  Identities=24%  Similarity=0.368  Sum_probs=244.4

Q ss_pred             cccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCce---eEeeccCCCCEEEEEeCCC-CCEEEEeeCCCcEEEEECC
Q 008496          270 TNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDL---KCTLSKHKGPIFSLKWNKK-GDYLLTGSCDKTAIVWDVK  345 (563)
Q Consensus       270 ~~~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~---~~~~~~h~~~V~~l~~~~~-~~~l~s~s~D~~v~iwd~~  345 (563)
                      ...+...|.+++|+.+|..|++|+.|+++++|++++..   .....+|.+.|-.++|+|. ...|++++.|++|++||++
T Consensus        16 ~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r   95 (313)
T KOG1407|consen   16 LQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIR   95 (313)
T ss_pred             hhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEec
Confidence            34556789999999999999999999999999987642   2246789999999999875 4689999999999999999


Q ss_pred             CCceeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEE
Q 008496          346 TEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIW  425 (563)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iw  425 (563)
                      .+++........+.+...-|.++..++.+..|..|...+.++.+++..+. ..-.++-+.|+.++.+++.....|+|.|-
T Consensus        96 ~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~~w~~~nd~Fflt~GlG~v~IL  174 (313)
T KOG1407|consen   96 SGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEISWNNSNDLFFLTNGLGCVEIL  174 (313)
T ss_pred             cCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhc-ccceeeeeeecCCCCEEEEecCCceEEEE
Confidence            99999988887777777777788899999999999999998877665543 34467889999888888777778999999


Q ss_pred             eCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCE
Q 008496          426 NMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEY  505 (563)
Q Consensus       426 d~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~  505 (563)
                      ....-+++.++++|...+.+|.|+|+|+         ++|+|+.|..+.+||+..--|+..+..+.-||..|+||.||++
T Consensus       175 sypsLkpv~si~AH~snCicI~f~p~Gr---------yfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~  245 (313)
T KOG1407|consen  175 SYPSLKPVQSIKAHPSNCICIEFDPDGR---------YFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRM  245 (313)
T ss_pred             eccccccccccccCCcceEEEEECCCCc---------eEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcce
Confidence            9999999999999999999999999997         8999999999999999988888999999999999999999999


Q ss_pred             EEEEeCCCcEEEEecCCCeeEEEEecCCCEEEEEEcCCCCEEEEEECC
Q 008496          506 LASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFAN  553 (563)
Q Consensus       506 lasgs~dg~v~iw~~~~~~~~~~~~~~~~i~~l~w~~~g~~la~~~~~  553 (563)
                      ||+||.|..|-|=++++|..+...+..++.+.++|+|.-..||.+..|
T Consensus       246 lASaSEDh~IDIA~vetGd~~~eI~~~~~t~tVAWHPk~~LLAyA~dd  293 (313)
T KOG1407|consen  246 LASASEDHFIDIAEVETGDRVWEIPCEGPTFTVAWHPKRPLLAYACDD  293 (313)
T ss_pred             eeccCccceEEeEecccCCeEEEeeccCCceeEEecCCCceeeEEecC
Confidence            999999999999999999999999999999999999999999988765

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=100.00  E-value=4.1e-33  Score=254.54  Aligned_cols=279  Identities=27%  Similarity=0.475  Sum_probs=232.8

Q ss_pred             CCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCC---CEE
Q 008496          213 GHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG---TLL  289 (563)
Q Consensus       213 ~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g---~~l  289 (563)
                      .|.+.|.++.-.  +.+++||+.||++|+|+.....              .+..    .++.++|..++|-...   ..|
T Consensus       103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~Gk~--------------~~~~----~Ght~~ik~v~~v~~n~~~~~f  162 (423)
T KOG0313|consen  103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDLKGKS--------------IKTI----VGHTGPIKSVAWVIKNSSSCLF  162 (423)
T ss_pred             cchhhhhhhccc--CceEEEeecCCeeEEEecCCce--------------EEEE----ecCCcceeeeEEEecCCccceE
Confidence            377888888776  7899999999999999975321              1222    2456778888885433   459


Q ss_pred             EEEeCCCeEEEEEcCCc-----eeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCC------------------
Q 008496          290 ATGSYDGQARIWSTNGD-----LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKT------------------  346 (563)
Q Consensus       290 ~sg~~dg~i~vw~~~~~-----~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~------------------  346 (563)
                      ++++.|.++++|..+..     ......+|+.+|-++.-.++|..+++||.|.+++||+..+                  
T Consensus       163 vsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~  242 (423)
T KOG0313|consen  163 VSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQK  242 (423)
T ss_pred             EEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhh
Confidence            99999999999986532     1223349999999999999999999999999999998321                  


Q ss_pred             -------CceeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCC
Q 008496          347 -------EEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDD  419 (563)
Q Consensus       347 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~d  419 (563)
                             +..+-.+..|..++.++.|.+...+.+++.|.+|+.||+..++.+..+.+ ...++|++++|..++||+||.|
T Consensus       243 ~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssd  321 (423)
T KOG0313|consen  243 REKEGGTRTPLVTLEGHTEPVSSVVWSDATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSKLLASGSSD  321 (423)
T ss_pred             hhhcccccCceEEecccccceeeEEEcCCCceEeecccceEEEEEeecccceeeeec-CcceeEeecccccceeeecCCC
Confidence                   12334567899999999999999999999999999999999887777664 4568999999999999999999


Q ss_pred             CcEEEEeCCCCc---eeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCe-EEEEecCCCCCEE
Q 008496          420 VTAKIWNMKQDK---YVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK-LLYSLNGHREPVY  495 (563)
Q Consensus       420 g~i~iwd~~~~~---~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~-~~~~~~~h~~~i~  495 (563)
                      ..||+||.+++.   ..++|.+|...|.++.|+|...        +.|++||.|+++++||+++.+ .++.+.+|...|.
T Consensus       322 r~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~--------~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl  393 (423)
T KOG0313|consen  322 RHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNE--------FQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVL  393 (423)
T ss_pred             CceeecCCCCCCCceeEEeeecchhhhhheecCCCCc--------eEEEEEecCCeEEEEEeccCCCcceeeccCCceEE
Confidence            999999998653   4578889999999999999753        589999999999999999887 8999999999999


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEecC
Q 008496          496 SLAFSPTGEYLASGSLDKSMHIWSLK  521 (563)
Q Consensus       496 ~l~~spdg~~lasgs~dg~v~iw~~~  521 (563)
                      ++.|+ ++.+|++||.|++|+|+.-.
T Consensus       394 ~vdW~-~~~~IvSGGaD~~l~i~~~~  418 (423)
T KOG0313|consen  394 SVDWN-EGGLIVSGGADNKLRIFKGS  418 (423)
T ss_pred             EEecc-CCceEEeccCcceEEEeccc
Confidence            99997 56799999999999998643

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=3.4e-34  Score=269.42  Aligned_cols=281  Identities=22%  Similarity=0.416  Sum_probs=238.3

Q ss_pred             cccCCCCeEEEEECC-CCCEEEEEeCCCeEEEEEcC--CceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCC
Q 008496          270 TNEKSKDVTTLDWNG-EGTLLATGSYDGQARIWSTN--GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKT  346 (563)
Q Consensus       270 ~~~~~~~V~~l~~s~-~g~~l~sg~~dg~i~vw~~~--~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~  346 (563)
                      ..+|.+.|+++.|.| .+.+|++|+.|+.|+||++-  +.++.++.+|..+|..++|+++|..|+|+|-|+.+++||++|
T Consensus       210 ~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtET  289 (503)
T KOG0282|consen  210 LSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTET  289 (503)
T ss_pred             ccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeecccc
Confidence            346778899999999 89999999999999999964  678889999999999999999999999999999999999999


Q ss_pred             CceeEEeeecccCeEEEecC--CCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEE
Q 008496          347 EEWKQQFEFHSGPTLDVDWR--NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKI  424 (563)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~i  424 (563)
                      |++...|.... .+.++.+.  +...|++++.|+.|+.||++.++.++.+..|-+.|+.+.|-++|+.+++.++|++++|
T Consensus       290 G~~~~~f~~~~-~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~ri  368 (503)
T KOG0282|consen  290 GQVLSRFHLDK-VPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRI  368 (503)
T ss_pred             ceEEEEEecCC-CceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEE
Confidence            99988776533 34556654  3468999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCCCceeeeec-ccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCe---EEEEecCCCCC--EEEEE
Q 008496          425 WNMKQDKYVHDLR-EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK---LLYSLNGHREP--VYSLA  498 (563)
Q Consensus       425 wd~~~~~~~~~~~-~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~---~~~~~~~h~~~--i~~l~  498 (563)
                      |+.+..-.+..+. .+...+.++..+|.+.         +++.-+.|+.|.|+.+...-   ....+.+|..+  -..+.
T Consensus       369 We~~~~v~ik~i~~~~~hsmP~~~~~P~~~---------~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~  439 (503)
T KOG0282|consen  369 WENRIPVPIKNIADPEMHTMPCLTLHPNGK---------WFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVD  439 (503)
T ss_pred             EEcCCCccchhhcchhhccCcceecCCCCC---------eehhhccCceEEEEecccccccCHhhhhcceeccCceeeEE
Confidence            9988776543322 2223455677778765         78888999999999865321   22346677644  45689


Q ss_pred             EcCCCCEEEEEeCCCcEEEEecCCCeeEEEEecC-CCEEEEEEcCCC-CEEEEEECCCeEEEEE
Q 008496          499 FSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGN-GGIFEVCWNKEG-DKIAACFANHTVCVLD  560 (563)
Q Consensus       499 ~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~~-~~i~~l~w~~~g-~~la~~~~~~~v~v~~  560 (563)
                      |||||.+|++|+.||.+.+||.++-+++..+..+ +.+..+.|+|-. +.+|+|+.+|.|.|||
T Consensus       440 fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  440 FSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD  503 (503)
T ss_pred             EcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence            9999999999999999999999999999888876 678899999965 6999999999999996

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=2.1e-34  Score=259.77  Aligned_cols=273  Identities=25%  Similarity=0.471  Sum_probs=232.0

Q ss_pred             CCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEEe
Q 008496          214 HTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGS  293 (563)
Q Consensus       214 h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~  293 (563)
                      ..+.|+|+.+  |+..+++|..|.+|+|||..+-.+             ++.    ..+|++.|.|+.|.  .+.|++|+
T Consensus       196 ~skgVYClQY--DD~kiVSGlrDnTikiWD~n~~~c-------------~~~----L~GHtGSVLCLqyd--~rviisGS  254 (499)
T KOG0281|consen  196 NSKGVYCLQY--DDEKIVSGLRDNTIKIWDKNSLEC-------------LKI----LTGHTGSVLCLQYD--ERVIVSGS  254 (499)
T ss_pred             cCCceEEEEe--cchhhhcccccCceEEeccccHHH-------------HHh----hhcCCCcEEeeecc--ceEEEecC
Confidence            3478999988  567889999999999999764321             112    23467889999985  45999999


Q ss_pred             CCCeEEEEEcC-CceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCc---eeEEeeecccCeEEEecCCCc
Q 008496          294 YDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEE---WKQQFEFHSGPTLDVDWRNNV  369 (563)
Q Consensus       294 ~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~~  369 (563)
                      .|.+|+|||.+ |....++.+|...|..+.|+.  .+++++|.|.++.+||+....   +...+.+|...+..+++.+. 
T Consensus       255 SDsTvrvWDv~tge~l~tlihHceaVLhlrf~n--g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~k-  331 (499)
T KOG0281|consen  255 SDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSN--GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDK-  331 (499)
T ss_pred             CCceEEEEeccCCchhhHHhhhcceeEEEEEeC--CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccccc-
Confidence            99999999986 667788999999999999974  589999999999999986543   33455677788888888665 


Q ss_pred             eEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEEEEEc
Q 008496          370 SFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWS  449 (563)
Q Consensus       370 ~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~  449 (563)
                      .++++++|.+|++|++.+...++++.||...|.|+.+  .++++++||.|.+||+||+..+.++..+.+|..-|.++.|.
T Consensus       332 yIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd  409 (499)
T KOG0281|consen  332 YIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD  409 (499)
T ss_pred             eEEEecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeec
Confidence            7899999999999999999999999999999999988  58999999999999999999999999999999999999996


Q ss_pred             cCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCe---------EEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEec
Q 008496          450 PTGSGTNNPNQQLILASASFDSTVKLWDVELGK---------LLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSL  520 (563)
Q Consensus       450 p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~---------~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~  520 (563)
                      ..           -+++|..||+|++||+..+.         |+.++..|.+.|..+.|  |...|++++.|.+|.|||.
T Consensus       410 ~k-----------rIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtILiWdF  476 (499)
T KOG0281|consen  410 NK-----------RIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDDTILIWDF  476 (499)
T ss_pred             Cc-----------eeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEee--cceEEEeccCCCeEEEEEc
Confidence            43           58999999999999987653         44556679999999999  5668999999999999999


Q ss_pred             CCCee
Q 008496          521 KEGKI  525 (563)
Q Consensus       521 ~~~~~  525 (563)
                      .++-.
T Consensus       477 l~~~~  481 (499)
T KOG0281|consen  477 LNGPP  481 (499)
T ss_pred             CCCCc
Confidence            87643

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.5e-32  Score=234.08  Aligned_cols=290  Identities=19%  Similarity=0.322  Sum_probs=242.2

Q ss_pred             ecCCCceeEecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEE
Q 008496          202 EIPNSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLD  281 (563)
Q Consensus       202 ~~~~~~~~~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~  281 (563)
                      +.|.....+|..|+++|.++.|+-+|++.+|+|.|.++|+|+.-.+..             ++..    ..|...|..++
T Consensus         4 e~ptkr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~l-------------iktY----sghG~EVlD~~   66 (307)
T KOG0316|consen    4 ELPTKRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGAL-------------IKTY----SGHGHEVLDAA   66 (307)
T ss_pred             cCcchhceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccce-------------eeee----cCCCceeeecc
Confidence            356667788999999999999999999999999999999999765432             2222    34567899999


Q ss_pred             ECCCCCEEEEEeCCCeEEEEEcC-CceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCC--ceeEEeeeccc
Q 008496          282 WNGEGTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTE--EWKQQFEFHSG  358 (563)
Q Consensus       282 ~s~~g~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~--~~~~~~~~~~~  358 (563)
                      .+.|...|++|+.|..+.+||++ |+....+.+|.+.|..++|+.+...+++|+.|.++++||.++.  +.++.+.....
T Consensus        67 ~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D  146 (307)
T KOG0316|consen   67 LSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKD  146 (307)
T ss_pred             ccccccccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcC
Confidence            99999999999999999999986 6778899999999999999999999999999999999998764  45566665556


Q ss_pred             CeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecc
Q 008496          359 PTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLRE  438 (563)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~  438 (563)
                      .+.+++.. ...+++++.||+++.|+++.+.....+.||  +|+|++|+++++..+.++.|+++|+.|-.+++.+...++
T Consensus       147 ~V~Si~v~-~heIvaGS~DGtvRtydiR~G~l~sDy~g~--pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkG  223 (307)
T KOG0316|consen  147 GVSSIDVA-EHEIVAGSVDGTVRTYDIRKGTLSSDYFGH--PITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKG  223 (307)
T ss_pred             ceeEEEec-ccEEEeeccCCcEEEEEeecceeehhhcCC--cceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcc
Confidence            66666643 456888999999999999988776666554  799999999999999999999999999999999999999


Q ss_pred             cCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCC-EEEEEEcCCCCEEEEEeCCCcEEE
Q 008496          439 HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREP-VYSLAFSPTGEYLASGSLDKSMHI  517 (563)
Q Consensus       439 ~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~-i~~l~~spdg~~lasgs~dg~v~i  517 (563)
                      |...-+.+..+-..+       ...+++||.||.|.+||+.....+..+..+..+ |.+++++|.-.-+.++...+ +..
T Consensus       224 hkn~eykldc~l~qs-------dthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~~~-~~~  295 (307)
T KOG0316|consen  224 HKNMEYKLDCCLNQS-------DTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITATGHG-DLF  295 (307)
T ss_pred             cccceeeeeeeeccc-------ceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEecCCc-eec
Confidence            988776665433322       136899999999999999999999999888877 89999999877676666443 556


Q ss_pred             Ee
Q 008496          518 WS  519 (563)
Q Consensus       518 w~  519 (563)
                      |-
T Consensus       296 ~~  297 (307)
T KOG0316|consen  296 WY  297 (307)
T ss_pred             ee
Confidence            64

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=7.6e-32  Score=233.02  Aligned_cols=265  Identities=20%  Similarity=0.369  Sum_probs=225.9

Q ss_pred             CEEEEEeCCCeEEEEEcC-CceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCc--eeEEeeecccCeEEE
Q 008496          287 TLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEE--WKQQFEFHSGPTLDV  363 (563)
Q Consensus       287 ~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~--~~~~~~~~~~~~~~~  363 (563)
                      -+|+++++|.+||+|... |....+++...+.|..|...|+++.|++++. ..||+||++++.  .+.+|+.|...+..+
T Consensus        11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaV   89 (311)
T KOG0315|consen   11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAV   89 (311)
T ss_pred             eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEE
Confidence            479999999999999965 6666777777788999999999998887764 689999998765  467889999999999


Q ss_pred             ecCCCce-EEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeec-ccCC
Q 008496          364 DWRNNVS-FATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLR-EHSK  441 (563)
Q Consensus       364 ~~~~~~~-~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~-~~~~  441 (563)
                      .|..+.+ ..+++.||++++|+++.....+.| .|..+|+++..+|+...|++|..+|.|++||+....+.+.+. ....
T Consensus        90 gF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~-~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~  168 (311)
T KOG0315|consen   90 GFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNY-QHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDT  168 (311)
T ss_pred             EEeecCeEEEecCCCceEEEEeccCcccchhc-cCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCc
Confidence            9976654 578999999999999985555544 477999999999999999999999999999999887666554 3446


Q ss_pred             CEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC------eEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcE
Q 008496          442 EIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG------KLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSM  515 (563)
Q Consensus       442 ~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~------~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v  515 (563)
                      .|.++...|+|+         +|+.+..-|+.++|++-+.      +++..+..|.+-|..+.||||+++||++|.|.++
T Consensus       169 ~i~sl~v~~dgs---------ml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv  239 (311)
T KOG0315|consen  169 SIQSLTVMPDGS---------MLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTV  239 (311)
T ss_pred             ceeeEEEcCCCc---------EEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceE
Confidence            789999999986         7888889999999998654      3456678899999999999999999999999999


Q ss_pred             EEEecCCC-eeEEEEecC-CCEEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496          516 HIWSLKEG-KIVKTYTGN-GGIFEVCWNKEGDKIAACFANHTVCVLDFR  562 (563)
Q Consensus       516 ~iw~~~~~-~~~~~~~~~-~~i~~l~w~~~g~~la~~~~~~~v~v~~~~  562 (563)
                      +||+..+. ++...++++ ..+.+.+||.||.+|++|++|+.+++|++.
T Consensus       240 ~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~  288 (311)
T KOG0315|consen  240 KIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLS  288 (311)
T ss_pred             EEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccc
Confidence            99999887 555555554 458999999999999999999999999875

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=3.4e-33  Score=252.94  Aligned_cols=246  Identities=26%  Similarity=0.475  Sum_probs=225.8

Q ss_pred             ceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecCCCc-eEEEEeCCCeEEEEE
Q 008496          306 DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNV-SFATSSTDNMIYVCK  384 (563)
Q Consensus       306 ~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~i~~~~  384 (563)
                      ++...+.+|.+-|.++++.|.+.+|++|+.|++++|||+.++++..++..|...+..+...+.. .+.+++.|+.|.-||
T Consensus       142 Kl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwD  221 (460)
T KOG0285|consen  142 KLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWD  221 (460)
T ss_pred             eehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEe
Confidence            4455788999999999999999999999999999999999999999999998888888776544 557889999999999


Q ss_pred             cCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEE
Q 008496          385 IGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLIL  464 (563)
Q Consensus       385 ~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l  464 (563)
                      +..++.|+.+-||-+.|.|++.+|.-..|+||+.|.++||||+++...++.+.+|..+|.++.+.|...         .+
T Consensus       222 Le~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dp---------qv  292 (460)
T KOG0285|consen  222 LEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDP---------QV  292 (460)
T ss_pred             chhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCC---------ce
Confidence            999999999999999999999999999999999999999999999999999999999999999988654         47


Q ss_pred             EEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEecCCC-EEEEEEcCC
Q 008496          465 ASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGG-IFEVCWNKE  543 (563)
Q Consensus       465 ~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~~~~-i~~l~w~~~  543 (563)
                      ++||+|++|++||++.|+...++..|...|.+++.+|.-..+|++|.|. |+-|++..|..+..+.++.. |..|+-+.|
T Consensus       293 it~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dn-ik~w~~p~g~f~~nlsgh~~iintl~~nsD  371 (460)
T KOG0285|consen  293 ITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDN-IKQWKLPEGEFLQNLSGHNAIINTLSVNSD  371 (460)
T ss_pred             EEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCcc-ceeccCCccchhhccccccceeeeeeeccC
Confidence            8999999999999999999999999999999999999999999999986 99999999999888877554 678999888


Q ss_pred             CCEEEEEECCCeEEEEEee
Q 008496          544 GDKIAACFANHTVCVLDFR  562 (563)
Q Consensus       544 g~~la~~~~~~~v~v~~~~  562 (563)
                      | .+++|+.+|.+..||++
T Consensus       372 ~-v~~~G~dng~~~fwdwk  389 (460)
T KOG0285|consen  372 G-VLVSGGDNGSIMFWDWK  389 (460)
T ss_pred             c-eEEEcCCceEEEEEecC
Confidence            7 67788899999999987

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=100.00  E-value=1.6e-32  Score=282.30  Aligned_cols=295  Identities=27%  Similarity=0.471  Sum_probs=232.9

Q ss_pred             CCCCceEEEEECCCCCEEEEee--CCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEE
Q 008496          213 GHTSEVCACAWSPAGSLLASGS--GDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLA  290 (563)
Q Consensus       213 ~h~~~V~~~~~sp~~~~latgs--~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~  290 (563)
                      .+...|++++.||+|..+||||  .|+.++||....-.  ........+   +.........|...|+|+.|++||++||
T Consensus        11 H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl--~~~~~~~~~---l~k~l~~m~~h~~sv~CVR~S~dG~~lA   85 (942)
T KOG0973|consen   11 HNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVL--DEKEEKNEN---LPKHLCTMDDHDGSVNCVRFSPDGSYLA   85 (942)
T ss_pred             cCCeeEEEEEecCCceeEecCCccccccceeecccccc--chhhhhhcc---cchhheeeccccCceeEEEECCCCCeEe
Confidence            3457799999999999999999  99999999864311  000000000   1111112234678899999999999999


Q ss_pred             EEeCCCeEEEEEcCC-------------------ceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeE
Q 008496          291 TGSYDGQARIWSTNG-------------------DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQ  351 (563)
Q Consensus       291 sg~~dg~i~vw~~~~-------------------~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~  351 (563)
                      +|+.|+.|.||....                   +....+.+|.+.|..++|+|++.+|++++.|++|.|||.++.+.  
T Consensus        86 sGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~--  163 (942)
T KOG0973|consen   86 SGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFEL--  163 (942)
T ss_pred             eccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEcccccee--
Confidence            999999999998651                   14567889999999999999999999999999999999876532  


Q ss_pred             EeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCc
Q 008496          352 QFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDK  431 (563)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~  431 (563)
                                                             +.++.+|.+.|-.+.|+|-|++|||-++|++|+||+.....
T Consensus       164 ---------------------------------------~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~  204 (942)
T KOG0973|consen  164 ---------------------------------------LKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWG  204 (942)
T ss_pred             ---------------------------------------eeeeecccccccceEECCccCeeeeecCCceEEEEEcccce
Confidence                                                   35677899999999999999999999999999999988777


Q ss_pred             eeeeecccC------CCEEEEEEccCCCCCCCCCCcEEEEEE-eC---CCeEEEEeCCCCeEEEEecCCCCCEEEEEEcC
Q 008496          432 YVHDLREHS------KEIYTIRWSPTGSGTNNPNQQLILASA-SF---DSTVKLWDVELGKLLYSLNGHREPVYSLAFSP  501 (563)
Q Consensus       432 ~~~~~~~~~------~~i~~~~~~p~~~~~~~~~~~~~l~s~-s~---dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp  501 (563)
                      ..+.+..+-      ...+.+.|+|+|.         +|++. +.   -.++.|.+-.+-+.-..+-||..|+.+++|+|
T Consensus       205 i~k~It~pf~~~~~~T~f~RlSWSPDG~---------~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP  275 (942)
T KOG0973|consen  205 IEKSITKPFEESPLTTFFLRLSWSPDGH---------HLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNP  275 (942)
T ss_pred             eeEeeccchhhCCCcceeeecccCCCcC---------eecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeCh
Confidence            777665542      3467899999996         44443 22   34688888777777788999999999999998


Q ss_pred             C--------C-----C----EEEEEeCCCcEEEEecCCCeeEEEEe--cCCCEEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496          502 T--------G-----E----YLASGSLDKSMHIWSLKEGKIVKTYT--GNGGIFEVCWNKEGDKIAACFANHTVCVLDFR  562 (563)
Q Consensus       502 d--------g-----~----~lasgs~dg~v~iw~~~~~~~~~~~~--~~~~i~~l~w~~~g~~la~~~~~~~v~v~~~~  562 (563)
                      -        |     .    .+|+||.|++|.||.....+.+-...  .+..|.+++|+|||-.|.+|+.||+|.++.|.
T Consensus       276 ~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fe  355 (942)
T KOG0973|consen  276 KLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFE  355 (942)
T ss_pred             HHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcc
Confidence            1        1     1    57899999999999987666543322  25679999999999999999999999999874

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=9.7e-32  Score=235.28  Aligned_cols=235  Identities=32%  Similarity=0.638  Sum_probs=197.9

Q ss_pred             CCCCeEEEEECCC-CCEEEEEeCCCeEEEEEcCC-c---eeEee-ccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCC
Q 008496          273 KSKDVTTLDWNGE-GTLLATGSYDGQARIWSTNG-D---LKCTL-SKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKT  346 (563)
Q Consensus       273 ~~~~V~~l~~s~~-g~~l~sg~~dg~i~vw~~~~-~---~~~~~-~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~  346 (563)
                      +...|..++|+|. |..|++|+.|..||+|+..+ .   .+..+ .+|+..|.+++|+|.|++|+++|-|.++.||.-..
T Consensus        13 h~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~   92 (312)
T KOG0645|consen   13 HKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKED   92 (312)
T ss_pred             CCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCC
Confidence            3456999999998 99999999999999999874 2   22222 47999999999999999999999999999996443


Q ss_pred             CceeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEe
Q 008496          347 EEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWN  426 (563)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd  426 (563)
                      +++                                       ..+.++.||.++|.|++|+++|.+||+||.|..+-||.
T Consensus        93 ~ef---------------------------------------ecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe  133 (312)
T KOG0645|consen   93 GEF---------------------------------------ECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWE  133 (312)
T ss_pred             Cce---------------------------------------eEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEE
Confidence            321                                       23567899999999999999999999999999999999


Q ss_pred             CCCC---ceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCC---CCeEEEEecCCCCCEEEEEEc
Q 008496          427 MKQD---KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVE---LGKLLYSLNGHREPVYSLAFS  500 (563)
Q Consensus       427 ~~~~---~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~---~~~~~~~~~~h~~~i~~l~~s  500 (563)
                      ...+   .++..++.|.+.|..+.|+|...         +|+|+|.|++|++|.-.   .-.++.++.+|...|.+++|+
T Consensus       134 ~deddEfec~aVL~~HtqDVK~V~WHPt~d---------lL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~  204 (312)
T KOG0645|consen  134 IDEDDEFECIAVLQEHTQDVKHVIWHPTED---------LLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFD  204 (312)
T ss_pred             ecCCCcEEEEeeeccccccccEEEEcCCcc---------eeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEec
Confidence            8744   45677899999999999999754         89999999999999765   346899999999999999999


Q ss_pred             CCCCEEEEEeCCCcEEEEecCCCeeEEEEecCCCEEEEEEcCCCCEEEEEECCCeEEEEE
Q 008496          501 PTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLD  560 (563)
Q Consensus       501 pdg~~lasgs~dg~v~iw~~~~~~~~~~~~~~~~i~~l~w~~~g~~la~~~~~~~v~v~~  560 (563)
                      |.|..|++++.|++|+||...+.-   +......++.++|.  ...||++..|+.++||-
T Consensus       205 ~~G~rl~s~sdD~tv~Iw~~~~~~---~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~  259 (312)
T KOG0645|consen  205 NIGSRLVSCSDDGTVSIWRLYTDL---SGMHSRALYDVPWD--NGVIASGGGDDAIRLFK  259 (312)
T ss_pred             CCCceEEEecCCcceEeeeeccCc---chhcccceEeeeec--ccceEeccCCCEEEEEE
Confidence            999999999999999999865211   11123568999999  44889988999998873

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=100.00  E-value=1.5e-33  Score=259.96  Aligned_cols=290  Identities=22%  Similarity=0.372  Sum_probs=245.3

Q ss_pred             ecCCCceeEecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEE
Q 008496          202 EIPNSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLD  281 (563)
Q Consensus       202 ~~~~~~~~~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~  281 (563)
                      .+|......+..|.++|..+.|-++...|+|||.|..|++|++...+..               ..+...+..+.|+.++
T Consensus       162 ~lpS~~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~---------------~~~tLaGs~g~it~~d  226 (459)
T KOG0288|consen  162 TLPSRALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSE---------------LISTLAGSLGNITSID  226 (459)
T ss_pred             ccchhhhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhh---------------hhhhhhccCCCcceee
Confidence            4666667788999999999999999999999999999999998654311               1111223356799999


Q ss_pred             ECCCCCEEEEEeCCCeEEEEEcC-CceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCe
Q 008496          282 WNGEGTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPT  360 (563)
Q Consensus       282 ~s~~g~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~  360 (563)
                      |.+++..++.++.|+.+++|+.+ .++..++.+|++.|++++|......+++|+.|.++++||+....+.+++.... ..
T Consensus       227 ~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S-~c  305 (459)
T KOG0288|consen  227 FDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGS-QC  305 (459)
T ss_pred             ecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccccc-cc
Confidence            99999999999999999999987 46778999999999999999888779999999999999999887776554322 22


Q ss_pred             EEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeccc-
Q 008496          361 LDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREH-  439 (563)
Q Consensus       361 ~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~-  439 (563)
                      .++... ...++++..|+.|++||++...+......+. .|+++..++++..|.+++.|.++.+.|+++....+.+.+. 
T Consensus       306 nDI~~~-~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g  383 (459)
T KOG0288|consen  306 NDIVCS-ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEG  383 (459)
T ss_pred             cceEec-ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccc
Confidence            233322 5568899999999999999998888887765 9999999999999999999999999999999888877643 


Q ss_pred             ---CCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCC--CEEEEEEcCCCCEEEEEeCCCc
Q 008496          440 ---SKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHRE--PVYSLAFSPTGEYLASGSLDKS  514 (563)
Q Consensus       440 ---~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~--~i~~l~~spdg~~lasgs~dg~  514 (563)
                         ....+.+.|+|++.         |+|+||.||.|+||++.++++...+.....  .|++++|+|.|.+|++++.++.
T Consensus       384 ~k~asDwtrvvfSpd~~---------YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~  454 (459)
T KOG0288|consen  384 FKCASDWTRVVFSPDGS---------YVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKA  454 (459)
T ss_pred             cccccccceeEECCCCc---------eeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcc
Confidence               23478899999986         899999999999999999999888866544  4999999999999999999999


Q ss_pred             EEEE
Q 008496          515 MHIW  518 (563)
Q Consensus       515 v~iw  518 (563)
                      +.+|
T Consensus       455 v~lW  458 (459)
T KOG0288|consen  455 VTLW  458 (459)
T ss_pred             eEec
Confidence            9999

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.1e-31  Score=264.38  Aligned_cols=286  Identities=25%  Similarity=0.408  Sum_probs=246.2

Q ss_pred             eEecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCE
Q 008496          209 TILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTL  288 (563)
Q Consensus       209 ~~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~  288 (563)
                      ..+.||...|.++++|.+...++||++ +.++||+..+.++..             .+      ....+.+..|-|.+++
T Consensus       367 i~~~GHR~dVRsl~vS~d~~~~~Sga~-~SikiWn~~t~kciR-------------Ti------~~~y~l~~~Fvpgd~~  426 (888)
T KOG0306|consen  367 IEIGGHRSDVRSLCVSSDSILLASGAG-ESIKIWNRDTLKCIR-------------TI------TCGYILASKFVPGDRY  426 (888)
T ss_pred             eeeccchhheeEEEeecCceeeeecCC-CcEEEEEccCcceeE-------------Ee------ccccEEEEEecCCCce
Confidence            456799999999999999999998865 679999987655422             11      1236889999999999


Q ss_pred             EEEEeCCCeEEEEEcC-CceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCC-----CceeEEeee-------
Q 008496          289 LATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKT-----EEWKQQFEF-------  355 (563)
Q Consensus       289 l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~-----~~~~~~~~~-------  355 (563)
                      +++|..+|.+.++|.. ..+..++..|.+.|++++.+|++..+++||.|++|++||..-     +...+.+..       
T Consensus       427 Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLe  506 (888)
T KOG0306|consen  427 IVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLE  506 (888)
T ss_pred             EEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEe
Confidence            9999999999999975 456667889999999999999999999999999999998631     221111222       


Q ss_pred             cccCeEEEecCCCceE-EEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceee
Q 008496          356 HSGPTLDVDWRNNVSF-ATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVH  434 (563)
Q Consensus       356 ~~~~~~~~~~~~~~~~-~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~  434 (563)
                      -...++++...++..| +.+-.|+++.+|-+++-+-...+.||.-+|.|++.+||+++++|||.|..|+||-++-|.|..
T Consensus       507 l~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHK  586 (888)
T KOG0306|consen  507 LEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHK  586 (888)
T ss_pred             ccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhh
Confidence            1345778888766555 666789999999999998888999999999999999999999999999999999999999999


Q ss_pred             eecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCc
Q 008496          435 DLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKS  514 (563)
Q Consensus       435 ~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~  514 (563)
                      .+.+|...|+++.|.|..         .++.+++.|+.|+-||-.+-+++..+.+|...|++++.+|+|.|++++|.|..
T Consensus       587 S~fAHdDSvm~V~F~P~~---------~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~s  657 (888)
T KOG0306|consen  587 SFFAHDDSVMSVQFLPKT---------HLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKS  657 (888)
T ss_pred             hhhcccCceeEEEEcccc---------eeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCce
Confidence            999999999999999964         37889999999999999999999999999999999999999999999999999


Q ss_pred             EEEEecCCC
Q 008496          515 MHIWSLKEG  523 (563)
Q Consensus       515 v~iw~~~~~  523 (563)
                      |++|...+.
T Consensus       658 IRlwE~tde  666 (888)
T KOG0306|consen  658 IRLWERTDE  666 (888)
T ss_pred             eEeeeccCc
Confidence            999997653

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=100.00  E-value=1.8e-31  Score=232.37  Aligned_cols=277  Identities=25%  Similarity=0.454  Sum_probs=232.6

Q ss_pred             eEecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECC-CCC
Q 008496          209 TILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG-EGT  287 (563)
Q Consensus       209 ~~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~-~g~  287 (563)
                      ..+++|...|..++|+.+|..||+|+.|+++++|++.......               .....++...|-.++|+| ...
T Consensus        14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~---------------~~~~~gh~~svdql~w~~~~~d   78 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRK---------------ELVYRGHTDSVDQLCWDPKHPD   78 (313)
T ss_pred             HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhh---------------hhcccCCCcchhhheeCCCCCc
Confidence            3467899999999999999999999999999999987542110               111234566788899987 568


Q ss_pred             EEEEEeCCCeEEEEEcC-CceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecC
Q 008496          288 LLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR  366 (563)
Q Consensus       288 ~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~  366 (563)
                      +|++++.|..|++||.. ++....... ++.-.-+.|+|+|.+++.++.|..|...|.++.+.....++... +..+.|.
T Consensus        79 ~~atas~dk~ir~wd~r~~k~~~~i~~-~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e-~ne~~w~  156 (313)
T KOG1407|consen   79 LFATASGDKTIRIWDIRSGKCTARIET-KGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFE-VNEISWN  156 (313)
T ss_pred             ceEEecCCceEEEEEeccCcEEEEeec-cCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccce-eeeeeec
Confidence            99999999999999975 444444443 33345588999999999999999999999998877665544332 3455554


Q ss_pred             -CCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEE
Q 008496          367 -NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYT  445 (563)
Q Consensus       367 -~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~  445 (563)
                       ++..|....+.|.|.+.....-+|+..+.+|.....||.|+|+|++||+|+.|-.+.+||+..--+++.+..+.-+|.+
T Consensus       157 ~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRT  236 (313)
T KOG1407|consen  157 NSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRT  236 (313)
T ss_pred             CCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEE
Confidence             4556777777899999999999999999999999999999999999999999999999999998899999999999999


Q ss_pred             EEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCC
Q 008496          446 IRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLD  512 (563)
Q Consensus       446 ~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~d  512 (563)
                      +.|+-+|.         +||+||.|..|-|=++++|..++.+. +.++.+.++|+|...+||-+..|
T Consensus       237 lSFS~dg~---------~lASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHPk~~LLAyA~dd  293 (313)
T KOG1407|consen  237 LSFSHDGR---------MLASASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHPKRPLLAYACDD  293 (313)
T ss_pred             EEeccCcc---------eeeccCccceEEeEecccCCeEEEee-ccCCceeEEecCCCceeeEEecC
Confidence            99999986         89999999999999999999999987 78899999999999999977765

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=9.2e-32  Score=275.19  Aligned_cols=240  Identities=40%  Similarity=0.696  Sum_probs=214.8

Q ss_pred             CCCeEEEEECCCCCEEEEEeCCCeEEEEEcCC-c--eeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCcee
Q 008496          274 SKDVTTLDWNGEGTLLATGSYDGQARIWSTNG-D--LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWK  350 (563)
Q Consensus       274 ~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~-~--~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~  350 (563)
                      ...|+++.|+++|+.+++++.++.+++|+... .  ....+.+|...|..++|+|++.++++++.|++++|||+...   
T Consensus       159 ~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~---  235 (456)
T KOG0266|consen  159 CPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDD---  235 (456)
T ss_pred             cCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCC---
Confidence            56799999999999999999999999999843 3  45566899999999999999999999999999999998322   


Q ss_pred             EEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCC
Q 008496          351 QQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD  430 (563)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~  430 (563)
                                                           ...++++.||...|++++|+|+|+++++|+.|++|+|||++++
T Consensus       236 -------------------------------------~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~  278 (456)
T KOG0266|consen  236 -------------------------------------GRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTG  278 (456)
T ss_pred             -------------------------------------CeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCC
Confidence                                                 1235678899999999999999999999999999999999999


Q ss_pred             ceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCe--EEEEecCCCCC--EEEEEEcCCCCEE
Q 008496          431 KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK--LLYSLNGHREP--VYSLAFSPTGEYL  506 (563)
Q Consensus       431 ~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~--~~~~~~~h~~~--i~~l~~spdg~~l  506 (563)
                      +++..+.+|.+.|.+++|++++.         +|++++.|+.|+|||+.++.  ++..+.++..+  +++++|+|++.+|
T Consensus       279 ~~~~~l~~hs~~is~~~f~~d~~---------~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~l  349 (456)
T KOG0266|consen  279 ECVRKLKGHSDGISGLAFSPDGN---------LLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYL  349 (456)
T ss_pred             eEEEeeeccCCceEEEEECCCCC---------EEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEE
Confidence            99999999999999999999986         78899999999999999999  56777776655  9999999999999


Q ss_pred             EEEeCCCcEEEEecCCCeeEEEEecCC----CEEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496          507 ASGSLDKSMHIWSLKEGKIVKTYTGNG----GIFEVCWNKEGDKIAACFANHTVCVLDFR  562 (563)
Q Consensus       507 asgs~dg~v~iw~~~~~~~~~~~~~~~----~i~~l~w~~~g~~la~~~~~~~v~v~~~~  562 (563)
                      ++++.|+.+++|++..++.+..+.++.    +++....++.|..+.+|+.|+.|.+||..
T Consensus       350 l~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~  409 (456)
T KOG0266|consen  350 LSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSS  409 (456)
T ss_pred             EEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCC
Confidence            999999999999999999998887642    45566778899999999999999999974

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.8e-32  Score=249.08  Aligned_cols=253  Identities=28%  Similarity=0.468  Sum_probs=232.1

Q ss_pred             EEcCCceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecCCC-ceEEEEeCCCe
Q 008496          301 WSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNN-VSFATSSTDNM  379 (563)
Q Consensus       301 w~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~  379 (563)
                      |-....+...+.+|..+|+.+.|+|+-..+++++.|.+|++||..++++...+..|...+.++.+... ..+++|+.|-.
T Consensus        94 wipRp~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~  173 (406)
T KOG0295|consen   94 WIPRPNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLS  173 (406)
T ss_pred             cCCCCCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccc
Confidence            54455667778899999999999999999999999999999999999999999999999999998764 56788999999


Q ss_pred             EEEEEcCC-CcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCC
Q 008496          380 IYVCKIGE-NRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNP  458 (563)
Q Consensus       380 i~~~~~~~-~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~  458 (563)
                      +.+|+..+ -..++.+.||...|.+++|-|.|.+|+||+.|.+|++|++.++.++.+|.+|...+..++...+|.     
T Consensus       174 ~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGt-----  248 (406)
T KOG0295|consen  174 AKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGT-----  248 (406)
T ss_pred             hhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCee-----
Confidence            99999987 456788889999999999999999999999999999999999999999999999999999888875     


Q ss_pred             CCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCC---------------CCEEEEEeCCCcEEEEecCCC
Q 008496          459 NQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPT---------------GEYLASGSLDKSMHIWSLKEG  523 (563)
Q Consensus       459 ~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spd---------------g~~lasgs~dg~v~iw~~~~~  523 (563)
                          ++|++|.|.+|++|-+.++.+...++.|.-+|-+++|.|.               |+++++||.|++|++||+.+|
T Consensus       249 ----i~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg  324 (406)
T KOG0295|consen  249 ----IIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTG  324 (406)
T ss_pred             ----EEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCC
Confidence                8999999999999999999999999999999999999873               258999999999999999999


Q ss_pred             eeEEEEecCC-CEEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496          524 KIVKTYTGNG-GIFEVCWNKEGDKIAACFANHTVCVLDFR  562 (563)
Q Consensus       524 ~~~~~~~~~~-~i~~l~w~~~g~~la~~~~~~~v~v~~~~  562 (563)
                      .++-++.++. .|.+++|+|-|++|++|..|++++|||++
T Consensus       325 ~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~  364 (406)
T KOG0295|consen  325 MCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLK  364 (406)
T ss_pred             eEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEec
Confidence            9999998754 68999999999999999999999999986

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=6.8e-32  Score=252.56  Aligned_cols=290  Identities=23%  Similarity=0.392  Sum_probs=235.2

Q ss_pred             eeEecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEE-e-eeccc--ccCCCCeEEEEEC
Q 008496          208 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLK-H-VKGRT--NEKSKDVTTLDWN  283 (563)
Q Consensus       208 ~~~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~--~~~~~~V~~l~~s  283 (563)
                      +..+..|.-+|.+|+++|++++.++++.|++|.-|++.++......-..+   .+++ + .....  ..|.+.|.+++.|
T Consensus       135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~---ev~k~~~~~~k~~r~~h~keil~~avS  211 (479)
T KOG0299|consen  135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERD---EVLKSHGNPLKESRKGHVKEILTLAVS  211 (479)
T ss_pred             ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccc---hhhhhccCCCCcccccccceeEEEEEc
Confidence            46778899999999999999999999999999999998876432111110   0011 0 00001  2567889999999


Q ss_pred             CCCCEEEEEeCCCeEEEEEcCC-ceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEE
Q 008496          284 GEGTLLATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLD  362 (563)
Q Consensus       284 ~~g~~l~sg~~dg~i~vw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~  362 (563)
                      +||++|++|+.|..|.||+... .....+.+|.++|.+++|-...+.|++++.|++|++|++.....             
T Consensus       212 ~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~-------------  278 (479)
T KOG0299|consen  212 SDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSY-------------  278 (479)
T ss_pred             CCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHH-------------
Confidence            9999999999999999999764 55667899999999999999989999999999999999865432             


Q ss_pred             EecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccCCC
Q 008496          363 VDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKE  442 (563)
Q Consensus       363 ~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~  442 (563)
                                                  +.++.||++.|.+|....-++.+-.|+.|+++++|++.... ...+++|.+.
T Consensus       279 ----------------------------vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~ees-qlifrg~~~s  329 (479)
T KOG0299|consen  279 ----------------------------VETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEES-QLIFRGGEGS  329 (479)
T ss_pred             ----------------------------HHHHhCCccceeeechhcccceEEeccccceeEEEeccccc-eeeeeCCCCC
Confidence                                        34567888888888887778888778899999999994433 3457788889


Q ss_pred             EEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEec-CC-----------CCCEEEEEEcCCCCEEEEEe
Q 008496          443 IYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLN-GH-----------REPVYSLAFSPTGEYLASGS  510 (563)
Q Consensus       443 i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~h-----------~~~i~~l~~spdg~~lasgs  510 (563)
                      +-|++|..+.          -+++||.||.|.+|++.+.+++++.. +|           ...|++++..|...++|+||
T Consensus       330 idcv~~In~~----------HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS  399 (479)
T KOG0299|consen  330 IDCVAFINDE----------HFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGS  399 (479)
T ss_pred             eeeEEEeccc----------ceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecC
Confidence            9999997654          47899999999999999888887653 22           12799999999999999999


Q ss_pred             CCCcEEEEecCCC----eeEEEEecCCCEEEEEEcCCCCEEEEEEC
Q 008496          511 LDKSMHIWSLKEG----KIVKTYTGNGGIFEVCWNKEGDKIAACFA  552 (563)
Q Consensus       511 ~dg~v~iw~~~~~----~~~~~~~~~~~i~~l~w~~~g~~la~~~~  552 (563)
                      .+|.|++|.+.+|    .++..+.-.+-|++|+|+++|++|.+|.+
T Consensus       400 ~~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f~~sgk~ivagiG  445 (479)
T KOG0299|consen  400 WSGCVRLWKIEDGLRAINLLYSLSLVGFVNSLAFSNSGKRIVAGIG  445 (479)
T ss_pred             CCCceEEEEecCCccccceeeecccccEEEEEEEccCCCEEEEecc
Confidence            9999999999887    45666777888999999999998887743

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=100.00  E-value=2.5e-31  Score=242.91  Aligned_cols=273  Identities=30%  Similarity=0.509  Sum_probs=227.1

Q ss_pred             CCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCceeEeeccCCCCEEEEEeCCCCC---EEEEeeCCCcEEEEECCCCce-
Q 008496          274 SKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGD---YLLTGSCDKTAIVWDVKTEEW-  349 (563)
Q Consensus       274 ~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~---~l~s~s~D~~v~iwd~~~~~~-  349 (563)
                      ...|.++.-.  +..|++|++||.+|+|+..|+...++.+|.++|.++.|.-...   .|++++.|.++++|-.+.++. 
T Consensus       105 dDWVSsv~~~--~~~IltgsYDg~~riWd~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~  182 (423)
T KOG0313|consen  105 DDWVSSVKGA--SKWILTGSYDGTSRIWDLKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENK  182 (423)
T ss_pred             hhhhhhhccc--CceEEEeecCCeeEEEecCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhh
Confidence            3456665555  6899999999999999999999999999999999998864443   599999999999998776543 


Q ss_pred             ---eEEeeecccCeEEEec-CCCceEEEEeCCCeEEEEEcC-------------------------CCcceeeecCCCcc
Q 008496          350 ---KQQFEFHSGPTLDVDW-RNNVSFATSSTDNMIYVCKIG-------------------------ENRPIKTFAGHQGE  400 (563)
Q Consensus       350 ---~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~~i~~~~~~-------------------------~~~~~~~~~~h~~~  400 (563)
                         .....+|..++-++.- .+...|++++-|.+|.+|+..                         ...|+.++.||...
T Consensus       183 ~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~  262 (423)
T KOG0313|consen  183 VKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEP  262 (423)
T ss_pred             hhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccc
Confidence               2334588888888884 566789999999999999921                         12377889999999


Q ss_pred             eeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC
Q 008496          401 VNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL  480 (563)
Q Consensus       401 i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~  480 (563)
                      |.++.|++ ...+.++|.|.+|+.||+.++..+.++.. ...+.++.++|...         +|++|+.|..||+||.++
T Consensus       263 Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~---------Ll~~gssdr~irl~DPR~  331 (423)
T KOG0313|consen  263 VSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSK---------LLASGSSDRHIRLWDPRT  331 (423)
T ss_pred             eeeEEEcC-CCceEeecccceEEEEEeecccceeeeec-CcceeEeecccccc---------eeeecCCCCceeecCCCC
Confidence            99999997 67788999999999999999988877654 46789999988654         899999999999999987


Q ss_pred             Ce---EEEEecCCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEecCCCe-eEEEEec-CCCEEEEEEcCCCCEEEEEECCC
Q 008496          481 GK---LLYSLNGHREPVYSLAFSPTG-EYLASGSLDKSMHIWSLKEGK-IVKTYTG-NGGIFEVCWNKEGDKIAACFANH  554 (563)
Q Consensus       481 ~~---~~~~~~~h~~~i~~l~~spdg-~~lasgs~dg~v~iw~~~~~~-~~~~~~~-~~~i~~l~w~~~g~~la~~~~~~  554 (563)
                      +.   ..+++.+|...|.++.|+|.. ..|++|+.|+++++||++.-+ .+-.+.+ +..|+++.|+. |..|++|+.|.
T Consensus       332 ~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~-~~~IvSGGaD~  410 (423)
T KOG0313|consen  332 GDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNE-GGLIVSGGADN  410 (423)
T ss_pred             CCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccC-CceEEeccCcc
Confidence            53   457889999999999999976 457899999999999999876 5555544 56799999975 55889999999


Q ss_pred             eEEEEE
Q 008496          555 TVCVLD  560 (563)
Q Consensus       555 ~v~v~~  560 (563)
                      ++.|+.
T Consensus       411 ~l~i~~  416 (423)
T KOG0313|consen  411 KLRIFK  416 (423)
T ss_pred             eEEEec
Confidence            998874

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=8.1e-31  Score=258.41  Aligned_cols=327  Identities=23%  Similarity=0.351  Sum_probs=248.8

Q ss_pred             CceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEEeCC
Q 008496          216 SEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYD  295 (563)
Q Consensus       216 ~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~d  295 (563)
                      .+|+|++-+|+.-+||.|-.||.|+||++.+...             +    -..++|...|+++.|...|..|++||.|
T Consensus        66 ~evt~l~~~~d~l~lAVGYaDGsVqif~~~s~~~-------------~----~tfngHK~AVt~l~fd~~G~rlaSGskD  128 (888)
T KOG0306|consen   66 AEVTCLRSSDDILLLAVGYADGSVQIFSLESEEI-------------L----ITFNGHKAAVTTLKFDKIGTRLASGSKD  128 (888)
T ss_pred             ceEEEeeccCCcceEEEEecCceEEeeccCCCce-------------e----eeecccccceEEEEEcccCceEeecCCC
Confidence            5789998889999999999999999999865321             1    1124567889999999999999999999


Q ss_pred             CeEEEEEcCCc-eeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCe--------------
Q 008496          296 GQARIWSTNGD-LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPT--------------  360 (563)
Q Consensus       296 g~i~vw~~~~~-~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~--------------  360 (563)
                      +.|.+||.-+. -...+.+|+..|+...|..+.+++++++.|+.+++||+.+..+..+.-.|.+.+              
T Consensus       129 t~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~~~lvt~~  208 (888)
T KOG0306|consen  129 TDIIVWDLVGEEGLFRLRGHKDSITQALFLNGDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDEKLLVTAG  208 (888)
T ss_pred             ccEEEEEeccceeeEEeecchHHHhHHhccCCCeEEEEeccCceEEEEecccceeeeEEecccceEEEEEEecceEEEEe
Confidence            99999997554 456899999999999999888999999999999999998754433221111100              


Q ss_pred             --------------------------------------------------------------------------------
Q 008496          361 --------------------------------------------------------------------------------  360 (563)
Q Consensus       361 --------------------------------------------------------------------------------  360 (563)
                                                                                                      
T Consensus       209 ~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k  288 (888)
T KOG0306|consen  209 TDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLK  288 (888)
T ss_pred             cCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHH
Confidence                                                                                            


Q ss_pred             -----------------------------------EEEecC---------------------------------------
Q 008496          361 -----------------------------------LDVDWR---------------------------------------  366 (563)
Q Consensus       361 -----------------------------------~~~~~~---------------------------------------  366 (563)
                                                         .+++|.                                       
T Consensus       289 ~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~  368 (888)
T KOG0306|consen  289 RAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIE  368 (888)
T ss_pred             HhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceee
Confidence                                               001110                                       


Q ss_pred             --------------CCceEEEEeCCCeEEEEEcCCCcceee---------------------------------------
Q 008496          367 --------------NNVSFATSSTDNMIYVCKIGENRPIKT---------------------------------------  393 (563)
Q Consensus       367 --------------~~~~~~~~~~d~~i~~~~~~~~~~~~~---------------------------------------  393 (563)
                                    ++..++.++..+.+.+|+..+.+++++                                       
T Consensus       369 ~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~E  448 (888)
T KOG0306|consen  369 IGGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASASLVE  448 (888)
T ss_pred             eccchhheeEEEeecCceeeeecCCCcEEEEEccCcceeEEeccccEEEEEecCCCceEEEeccCCceEEEEeehhhhhh
Confidence                          000023344556788888775544433                                       


Q ss_pred             -ecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCC-------Cceeeee-----cccCCCEEEEEEccCCCCC-----
Q 008496          394 -FAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQ-------DKYVHDL-----REHSKEIYTIRWSPTGSGT-----  455 (563)
Q Consensus       394 -~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~-------~~~~~~~-----~~~~~~i~~~~~~p~~~~~-----  455 (563)
                       ..+|.+.|.+++.+||++.++|||.|.+|++||+.-       .+.+-.+     -.-...|.++.+||++..-     
T Consensus       449 ti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLL  528 (888)
T KOG0306|consen  449 TIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLL  528 (888)
T ss_pred             hhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEec
Confidence             246888999999999999999999999999998631       1000000     0122345555666555310     


Q ss_pred             -----------------------------CCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEE
Q 008496          456 -----------------------------NNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYL  506 (563)
Q Consensus       456 -----------------------------~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l  506 (563)
                                                   ..|+. .+++|||.|.+|+||-++-|.|-.++-+|...|.++.|-|...++
T Consensus       529 dnTVkVyflDtlKFflsLYGHkLPV~smDIS~DS-klivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~F  607 (888)
T KOG0306|consen  529 DNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDS-KLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLF  607 (888)
T ss_pred             cCeEEEEEecceeeeeeecccccceeEEeccCCc-CeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeE
Confidence                                         01222 278999999999999999999999999999999999999999999


Q ss_pred             EEEeCCCcEEEEecCCCeeEEEEecC-CCEEEEEEcCCCCEEEEEECCCeEEEEE
Q 008496          507 ASGSLDKSMHIWSLKEGKIVKTYTGN-GGIFEVCWNKEGDKIAACFANHTVCVLD  560 (563)
Q Consensus       507 asgs~dg~v~iw~~~~~~~~~~~~~~-~~i~~l~w~~~g~~la~~~~~~~v~v~~  560 (563)
                      .++|.|+.|+-||-.+-+.++.+.++ ..|++++.+|+|.++++|+.|.++++|.
T Consensus       608 Ft~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE  662 (888)
T KOG0306|consen  608 FTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWE  662 (888)
T ss_pred             EEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeee
Confidence            99999999999999988888888764 5699999999999999999999999985

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.1e-30  Score=261.30  Aligned_cols=284  Identities=20%  Similarity=0.353  Sum_probs=244.9

Q ss_pred             cCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEE
Q 008496          212 EGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLAT  291 (563)
Q Consensus       212 ~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~s  291 (563)
                      ..-+..|-.++|||...+++++=-.|.|.+||..=++.                 ..+..+|.++|..++|+|++.++++
T Consensus         6 EskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tl-----------------i~rFdeHdGpVRgv~FH~~qplFVS   68 (1202)
T KOG0292|consen    6 ESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTL-----------------IDRFDEHDGPVRGVDFHPTQPLFVS   68 (1202)
T ss_pred             hcccccccceecCCCCCEEEEeecCceeeeehhhhhhH-----------------HhhhhccCCccceeeecCCCCeEEe
Confidence            34456788999999999999999999999999753321                 2234567899999999999999999


Q ss_pred             EeCCCeEEEEEcC-CceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecCC-Cc
Q 008496          292 GSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN-NV  369 (563)
Q Consensus       292 g~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~  369 (563)
                      ||.|-.|+||+.. .++..++.+|-.-|..+.|++.-.+++|+|.|.||+||+..++.++..+.+|.--+++..|.+ ..
T Consensus        69 GGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptED  148 (1202)
T KOG0292|consen   69 GGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTED  148 (1202)
T ss_pred             cCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccc
Confidence            9999999999975 456678999999999999999999999999999999999999999999999999999999987 67


Q ss_pred             eEEEEeCCCeEEEEEcCCC-----c------------------------ceeeecCCCcceeEEEECCCCCEEEEEeCCC
Q 008496          370 SFATSSTDNMIYVCKIGEN-----R------------------------PIKTFAGHQGEVNCVKWDPTGSLLASCSDDV  420 (563)
Q Consensus       370 ~~~~~~~d~~i~~~~~~~~-----~------------------------~~~~~~~h~~~i~~~~~~~~~~~las~s~dg  420 (563)
                      .++++|.|.+|++||+..-     .                        .-..+.||...|+-++|+|.-.+|+||++|.
T Consensus       149 lIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDR  228 (1202)
T KOG0292|consen  149 LIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDR  228 (1202)
T ss_pred             eEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcc
Confidence            8899999999999998531     0                        1134679999999999999999999999999


Q ss_pred             cEEEEeCCCCce--eeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEE
Q 008496          421 TAKIWNMKQDKY--VHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLA  498 (563)
Q Consensus       421 ~i~iwd~~~~~~--~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~  498 (563)
                      .|++|.++..+.  +.+.++|...|.++-|+|.-         .+++|.|.|++||+||+...+.+.+++...+..+.++
T Consensus       229 qVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q---------~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~la  299 (1202)
T KOG0292|consen  229 QVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQ---------DLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILA  299 (1202)
T ss_pred             eeeEEEeccccceeehhhhcccCCcceEEecCcc---------ceeEecCCCccEEEEecccccceeeeeccCCeEEEEE
Confidence            999999876543  56788999999999999854         2788999999999999999999999977677889999


Q ss_pred             EcCCCCEEEEEeCCCcEEEEecCC
Q 008496          499 FSPTGEYLASGSLDKSMHIWSLKE  522 (563)
Q Consensus       499 ~spdg~~lasgs~dg~v~iw~~~~  522 (563)
                      -+|..+++|+|-..| +.||.+..
T Consensus       300 ahP~lNLfAAgHDsG-m~VFkleR  322 (1202)
T KOG0292|consen  300 AHPELNLFAAGHDSG-MIVFKLER  322 (1202)
T ss_pred             ecCCcceeeeecCCc-eEEEEEcc
Confidence            999999888665444 66777763

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3.1e-31  Score=265.27  Aligned_cols=278  Identities=24%  Similarity=0.392  Sum_probs=245.1

Q ss_pred             CCCeEEEEECCCCCEEEEEeCCCeEEEEEcC-CceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEE
Q 008496          274 SKDVTTLDWNGEGTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQ  352 (563)
Q Consensus       274 ~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~  352 (563)
                      +..|..++|+|.-.+++++-.+|.|++||.. +.+...|..|.+||.++.|+|....|+||+.|..|++|+..+.++..+
T Consensus         9 SsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclft   88 (1202)
T KOG0292|consen    9 SSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFT   88 (1202)
T ss_pred             cccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhh
Confidence            5668999999999999999999999999965 667788999999999999999999999999999999999999999999


Q ss_pred             eeecccCeEEEecCCCc-eEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCc
Q 008496          353 FEFHSGPTLDVDWRNNV-SFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDK  431 (563)
Q Consensus       353 ~~~~~~~~~~~~~~~~~-~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~  431 (563)
                      +..|..-+..+.|.... -++++|.|.+|++|+..+.+.+..+.||...|.|.+|+|...+++|+|-|.+|||||+..-+
T Consensus        89 L~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLR  168 (1202)
T KOG0292|consen   89 LLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLR  168 (1202)
T ss_pred             hccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchh
Confidence            99999988888887654 56788999999999999999999999999999999999999999999999999999974210


Q ss_pred             ----------------------------e-eeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCe
Q 008496          432 ----------------------------Y-VHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK  482 (563)
Q Consensus       432 ----------------------------~-~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~  482 (563)
                                                  . -+.+.+|...|.-++|+|.-.         +++||+.|..|++|.....+
T Consensus       169 kk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlp---------liVSG~DDRqVKlWrmnetK  239 (1202)
T KOG0292|consen  169 KKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLP---------LIVSGADDRQVKLWRMNETK  239 (1202)
T ss_pred             ccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcc---------eEEecCCcceeeEEEecccc
Confidence                                        0 123567888899999998764         89999999999999876433


Q ss_pred             --EEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEec-CCCEEEEEEcCCCCEEEEEECCCeEEEE
Q 008496          483 --LLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTG-NGGIFEVCWNKEGDKIAACFANHTVCVL  559 (563)
Q Consensus       483 --~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~-~~~i~~l~w~~~g~~la~~~~~~~v~v~  559 (563)
                        .+-++.+|..+|.++-|+|.-..|++.|.|++|+|||+...+.++++.. ++.-+.++-+|..+.+|+|..+| +.||
T Consensus       240 aWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAgHDsG-m~VF  318 (1202)
T KOG0292|consen  240 AWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAGHDSG-MIVF  318 (1202)
T ss_pred             ceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCcceeeeecCCc-eEEE
Confidence              2456789999999999999999999999999999999999999999954 66788999999999999996655 5666


Q ss_pred             Ee
Q 008496          560 DF  561 (563)
Q Consensus       560 ~~  561 (563)
                      .+
T Consensus       319 kl  320 (1202)
T KOG0292|consen  319 KL  320 (1202)
T ss_pred             EE
Confidence            54

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2e-31  Score=245.66  Aligned_cols=279  Identities=23%  Similarity=0.396  Sum_probs=232.4

Q ss_pred             cCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCC----ceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCC
Q 008496          272 EKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNG----DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTE  347 (563)
Q Consensus       272 ~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~----~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~  347 (563)
                      .|...|..+.||++|++||+|+.|.+..+|.+..    +++.++.+|..+|.-+.|+||.++|++|+.|..+++||+.++
T Consensus       222 ~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tg  301 (519)
T KOG0293|consen  222 DHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTG  301 (519)
T ss_pred             hCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcc
Confidence            4678899999999999999999999999998542    456789999999999999999999999999999999999999


Q ss_pred             ceeEEeeec-ccCeEEEecCC-CceEEEEeCCCeEEEEEcCCCcceeeecCCC-cceeEEEECCCCCEEEEEeCCCcEEE
Q 008496          348 EWKQQFEFH-SGPTLDVDWRN-NVSFATSSTDNMIYVCKIGENRPIKTFAGHQ-GEVNCVKWDPTGSLLASCSDDVTAKI  424 (563)
Q Consensus       348 ~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~-~~i~~~~~~~~~~~las~s~dg~i~i  424 (563)
                      .....+... ...+.+..|.+ ...|++++.|+.+..|+++.+. ...+.+-. ..|.+++..+||+++++...|..|++
T Consensus       302 d~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~-~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l  380 (519)
T KOG0293|consen  302 DLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNI-LGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRL  380 (519)
T ss_pred             hhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcch-hhcccccccceeEEEEEcCCCcEEEEEecccceee
Confidence            987766544 45677788864 5689999999999999997654 23333332 35889999999999999999999999


Q ss_pred             EeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCC--EEEEEEcC-
Q 008496          425 WNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREP--VYSLAFSP-  501 (563)
Q Consensus       425 wd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~--i~~l~~sp-  501 (563)
                      ++..+...+..+ ....+|+++..+.++.         ++++.-.+..|++||++..+.+..+.||+..  |-.-+|.- 
T Consensus       381 ~~~e~~~dr~li-se~~~its~~iS~d~k---------~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~  450 (519)
T KOG0293|consen  381 YNREARVDRGLI-SEEQPITSFSISKDGK---------LALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGG  450 (519)
T ss_pred             echhhhhhhccc-cccCceeEEEEcCCCc---------EEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCC
Confidence            998765444333 3456899999988875         5566677899999999988888888888765  33446643 


Q ss_pred             CCCEEEEEeCCCcEEEEecCCCeeEEEEecCC-CEEEEEEcCCC-CEEEEEECCCeEEEEEe
Q 008496          502 TGEYLASGSLDKSMHIWSLKEGKIVKTYTGNG-GIFEVCWNKEG-DKIAACFANHTVCVLDF  561 (563)
Q Consensus       502 dg~~lasgs~dg~v~iw~~~~~~~~~~~~~~~-~i~~l~w~~~g-~~la~~~~~~~v~v~~~  561 (563)
                      +..++|+||.|+.|+||+..+|+++..+.++. .|..++|+|.. .++|+++.||+|+||..
T Consensus       451 ~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~  512 (519)
T KOG0293|consen  451 NDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGP  512 (519)
T ss_pred             CcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecC
Confidence            55899999999999999999999999999875 58999999976 58899999999999964

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=1.2e-31  Score=239.81  Aligned_cols=290  Identities=20%  Similarity=0.352  Sum_probs=238.9

Q ss_pred             cCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEE
Q 008496          212 EGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLAT  291 (563)
Q Consensus       212 ~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~s  291 (563)
                      .|.++.+.|..|||||++|++|+.||.|-+|++.+|+.....+.......         -.....|.|++||.|..++++
T Consensus       210 Fg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~f---------MMmd~aVlci~FSRDsEMlAs  280 (508)
T KOG0275|consen  210 FGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNF---------MMMDDAVLCISFSRDSEMLAS  280 (508)
T ss_pred             cccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcce---------eecccceEEEeecccHHHhhc
Confidence            35667789999999999999999999999999988875443322211111         123567999999999999999


Q ss_pred             EeCCCeEEEEEcC-CceeEeec-cCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecCCCc
Q 008496          292 GSYDGQARIWSTN-GDLKCTLS-KHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNV  369 (563)
Q Consensus       292 g~~dg~i~vw~~~-~~~~~~~~-~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  369 (563)
                      |+.||.|++|... |.....|. .|+..|+++.|+.++..+++++.|.++++.-+.+|+                     
T Consensus       281 GsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK---------------------  339 (508)
T KOG0275|consen  281 GSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGK---------------------  339 (508)
T ss_pred             cCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccch---------------------
Confidence            9999999999965 55555565 799999999999999999999999999998776554                     


Q ss_pred             eEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeccc--CCCEEEEE
Q 008496          370 SFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREH--SKEIYTIR  447 (563)
Q Consensus       370 ~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~--~~~i~~~~  447 (563)
                                          .++.|+||.+.|+.+.|.++|..++++|.||+|++|+.++..++.+++..  .-+|.++.
T Consensus       340 --------------------~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~  399 (508)
T KOG0275|consen  340 --------------------CLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVI  399 (508)
T ss_pred             --------------------hHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEE
Confidence                                45678899999999999999999999999999999999999999888754  34567777


Q ss_pred             EccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecC---CCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCe
Q 008496          448 WSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNG---HREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGK  524 (563)
Q Consensus       448 ~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~---h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~  524 (563)
                      .-|...        ..++.|...++|.|.++. |+.+.++..   ..+..-+.+.||-|.|+...+.|+.++.|.+.+|+
T Consensus       400 ~~PKnp--------eh~iVCNrsntv~imn~q-GQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~  470 (508)
T KOG0275|consen  400 LLPKNP--------EHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGK  470 (508)
T ss_pred             EcCCCC--------ceEEEEcCCCeEEEEecc-ceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCc
Confidence            666542        146678888999999986 777777743   23456677899999999999999999999999999


Q ss_pred             eEEEEecC-CCEEEEEEcCCCCEEEEEECCCeEEEEE
Q 008496          525 IVKTYTGN-GGIFEVCWNKEGDKIAACFANHTVCVLD  560 (563)
Q Consensus       525 ~~~~~~~~-~~i~~l~w~~~g~~la~~~~~~~v~v~~  560 (563)
                      +.+++.-+ ..+..++-+|.-+.||+-+.||.+.+|.
T Consensus       471 LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk  507 (508)
T KOG0275|consen  471 LERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK  507 (508)
T ss_pred             eeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence            98887654 3577899999999999999999888873

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=5.6e-31  Score=228.36  Aligned_cols=279  Identities=23%  Similarity=0.411  Sum_probs=226.8

Q ss_pred             EEEEECCC-CCEEEEe-------eCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCC-CCEE
Q 008496          219 CACAWSPA-GSLLASG-------SGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE-GTLL  289 (563)
Q Consensus       219 ~~~~~sp~-~~~latg-------s~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~-g~~l  289 (563)
                      .++.|||- .++||.+       .+.|.+.|-++.++..          +.....+     .-...+..++|++. .+.+
T Consensus        12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~g----------i~e~~s~-----d~~D~LfdV~Wse~~e~~~   76 (311)
T KOG0277|consen   12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKG----------IQECQSY-----DTEDGLFDVAWSENHENQV   76 (311)
T ss_pred             ceeEecccccchhheeehhhcccccCceEEEEecCCCCC----------eEEEEee-----ecccceeEeeecCCCcceE
Confidence            57889994 3443332       2467888888753221          1111221     12456889999985 5788


Q ss_pred             EEEeCCCeEEEEEcC--CceeEeeccCCCCEEEEEeCCCC-CEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecC
Q 008496          290 ATGSYDGQARIWSTN--GDLKCTLSKHKGPIFSLKWNKKG-DYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR  366 (563)
Q Consensus       290 ~sg~~dg~i~vw~~~--~~~~~~~~~h~~~V~~l~~~~~~-~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~  366 (563)
                      ++++.||.++|||..  ...+..++.|+..|+++.|++.. ..++++|.|++|++|+.....-+++|..|...++...|.
T Consensus        77 ~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~s  156 (311)
T KOG0277|consen   77 IAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFS  156 (311)
T ss_pred             EEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecC
Confidence            899999999999954  34566788999999999999854 568888999999999999988899999999999999886


Q ss_pred             C--CceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECC-CCCEEEEEeCCCcEEEEeCCCCc-eeeeecccCCC
Q 008496          367 N--NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDP-TGSLLASCSDDVTAKIWNMKQDK-YVHDLREHSKE  442 (563)
Q Consensus       367 ~--~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~-~~~~las~s~dg~i~iwd~~~~~-~~~~~~~~~~~  442 (563)
                      +  ...|+++++|+++++||++.......+..|..+|.|+.|+. +...|+||+.|+.||+||++.-+ ++..+.+|.-.
T Consensus       157 p~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~A  236 (311)
T KOG0277|consen  157 PHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLA  236 (311)
T ss_pred             CCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceE
Confidence            5  46899999999999999987655555889999999999986 56788999999999999998654 57788999999


Q ss_pred             EEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC-eEEEEecCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEec
Q 008496          443 IYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG-KLLYSLNGHREPVYSLAFSP-TGEYLASGSLDKSMHIWSL  520 (563)
Q Consensus       443 i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~h~~~i~~l~~sp-dg~~lasgs~dg~v~iw~~  520 (563)
                      |..++|+|...        .+|||+|.|=++||||...+ .++.+...|+.-|..+.||+ ++.++|+++.|..++||+.
T Consensus       237 VRkvk~Sph~~--------~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  237 VRKVKFSPHHA--------SLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP  308 (311)
T ss_pred             EEEEecCcchh--------hHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence            99999999764        38999999999999998844 45566777888899999998 4689999999999999984

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=100.00  E-value=1.4e-30  Score=265.39  Aligned_cols=271  Identities=30%  Similarity=0.516  Sum_probs=241.0

Q ss_pred             CCCeEEEEECCCCCEEEEEeCCCeEEEEEcC-CceeEe-eccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeE
Q 008496          274 SKDVTTLDWNGEGTLLATGSYDGQARIWSTN-GDLKCT-LSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQ  351 (563)
Q Consensus       274 ~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~-~~~~~~-~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~  351 (563)
                      ...+++..|.  +.++++++.+++|++|+.. +..... +.+|.+.|+++++...+..+++|+.|+++++||..++.+..
T Consensus       208 ~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~  285 (537)
T KOG0274|consen  208 DHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTH  285 (537)
T ss_pred             cchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEE
Confidence            4568888888  5689999999999999965 555555 99999999999998878999999999999999999999999


Q ss_pred             EeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCc
Q 008496          352 QFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDK  431 (563)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~  431 (563)
                      .+..|...+..++.. ...+++++.|.+|++|++.++..+.++.||.+.|+++..+  +.++++|+.|++|++||..+++
T Consensus       286 ~l~gh~stv~~~~~~-~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~  362 (537)
T KOG0274|consen  286 SLQGHTSSVRCLTID-PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGK  362 (537)
T ss_pred             EecCCCceEEEEEcc-CceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhce
Confidence            999999888777653 3356668899999999999999999999999999999997  8899999999999999999999


Q ss_pred             eeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC-eEEEEecCCCCCEEEEEEcCCCCEEEEEe
Q 008496          432 YVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG-KLLYSLNGHREPVYSLAFSPTGEYLASGS  510 (563)
Q Consensus       432 ~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~h~~~i~~l~~spdg~~lasgs  510 (563)
                      +++++++|...|+++.+.+.          ..+++|+.|++|++||+++. +++.++.+|..-+..+.+  .+++|++++
T Consensus       363 cl~sl~gH~~~V~sl~~~~~----------~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~  430 (537)
T KOG0274|consen  363 CLKSLSGHTGRVYSLIVDSE----------NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL--RDNFLVSSS  430 (537)
T ss_pred             eeeeecCCcceEEEEEecCc----------ceEEeeeeccceEeecCCchhhhhhhhcCCccccccccc--ccceeEecc
Confidence            99999999999999987653          16899999999999999999 999999999988866655  677999999


Q ss_pred             CCCcEEEEecCCCeeEEEEecC--CCEEEEEEcCCCCEEEEEECCCeEEEEEeeC
Q 008496          511 LDKSMHIWSLKEGKIVKTYTGN--GGIFEVCWNKEGDKIAACFANHTVCVLDFRM  563 (563)
Q Consensus       511 ~dg~v~iw~~~~~~~~~~~~~~--~~i~~l~w~~~g~~la~~~~~~~v~v~~~~~  563 (563)
                      .|++|++||..++++++++.+.  +.|..+++.  -..+++++.++++.+||+++
T Consensus       431 aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~  483 (537)
T KOG0274|consen  431 ADGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRS  483 (537)
T ss_pred             ccccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEeccc
Confidence            9999999999999999999873  778888887  45777778999999999974

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.98  E-value=7.7e-30  Score=222.85  Aligned_cols=280  Identities=24%  Similarity=0.391  Sum_probs=231.9

Q ss_pred             cCCCCeEEEEECCCCCEEEEEeCCCeEEEEEc-CCceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCcee
Q 008496          272 EKSKDVTTLDWNGEGTLLATGSYDGQARIWST-NGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWK  350 (563)
Q Consensus       272 ~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~-~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~  350 (563)
                      +|..+++.+.++.+|.+|++++.|..+.||-. +|....+..+|++.|+++..+-+.+++++|+.|.++++||+.+|+.+
T Consensus         8 GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~l   87 (327)
T KOG0643|consen    8 GHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQL   87 (327)
T ss_pred             cCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEE
Confidence            45678999999999999999999999999975 89999999999999999999999999999999999999999999998


Q ss_pred             EEeeecccCeEEEecCCCceEEEEeC------CCeEEEEEcC-------CCcceeeecCCCcceeEEEECCCCCEEEEEe
Q 008496          351 QQFEFHSGPTLDVDWRNNVSFATSST------DNMIYVCKIG-------ENRPIKTFAGHQGEVNCVKWDPTGSLLASCS  417 (563)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~------d~~i~~~~~~-------~~~~~~~~~~h~~~i~~~~~~~~~~~las~s  417 (563)
                      .++... .++..+++.....++..+.      .+.|.++++.       ...|+..+..+...++.+-|+|-+++|++|.
T Consensus        88 a~~k~~-~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Gh  166 (327)
T KOG0643|consen   88 ATWKTN-SPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGH  166 (327)
T ss_pred             EEeecC-CeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEec
Confidence            887653 3555666654443333333      3468888887       4567888888899999999999999999999


Q ss_pred             CCCcEEEEeCCCCc-eeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEE
Q 008496          418 DDVTAKIWNMKQDK-YVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYS  496 (563)
Q Consensus       418 ~dg~i~iwd~~~~~-~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~  496 (563)
                      +||.|.+||.+++. .+...+.|...|+.++++|+..         +++++|.|.+-++||+++-.++.++. ...||++
T Consensus       167 e~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T---------~FiT~s~Dttakl~D~~tl~v~Kty~-te~PvN~  236 (327)
T KOG0643|consen  167 EDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRT---------YFITGSKDTTAKLVDVRTLEVLKTYT-TERPVNT  236 (327)
T ss_pred             CCCcEEEEEcccCceeeechhhhccccccccccCCcc---------eEEecccCccceeeeccceeeEEEee-ecccccc
Confidence            99999999999974 5566678999999999999875         78999999999999999999988887 4579999


Q ss_pred             EEEcCCCCEEEEEeCCC--cEEEEecCCCee------------EEEEec-CCCEEEEEEcCCCCEEEEEECCCeEEEEEe
Q 008496          497 LAFSPTGEYLASGSLDK--SMHIWSLKEGKI------------VKTYTG-NGGIFEVCWNKEGDKIAACFANHTVCVLDF  561 (563)
Q Consensus       497 l~~spdg~~lasgs~dg--~v~iw~~~~~~~------------~~~~~~-~~~i~~l~w~~~g~~la~~~~~~~v~v~~~  561 (563)
                      .+++|.-.+++.|+...  .|.--+.+.|+.            +..+++ -++|++++++|+|+..++|..||.|+|..|
T Consensus       237 aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~F  316 (327)
T KOG0643|consen  237 AAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHF  316 (327)
T ss_pred             eecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEe
Confidence            99999888887776442  233333333432            222223 367999999999999999999999999876


Q ss_pred             e
Q 008496          562 R  562 (563)
Q Consensus       562 ~  562 (563)
                      .
T Consensus       317 d  317 (327)
T KOG0643|consen  317 D  317 (327)
T ss_pred             c
Confidence            4

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.98  E-value=8.6e-31  Score=227.19  Aligned_cols=275  Identities=23%  Similarity=0.393  Sum_probs=222.7

Q ss_pred             EEEEECC-CCCEEEEE-------eCCCeEEEEEcC-CceeEee--ccCCCCEEEEEeCCCC-CEEEEeeCCCcEEEEECC
Q 008496          278 TTLDWNG-EGTLLATG-------SYDGQARIWSTN-GDLKCTL--SKHKGPIFSLKWNKKG-DYLLTGSCDKTAIVWDVK  345 (563)
Q Consensus       278 ~~l~~s~-~g~~l~sg-------~~dg~i~vw~~~-~~~~~~~--~~h~~~V~~l~~~~~~-~~l~s~s~D~~v~iwd~~  345 (563)
                      .++.||| -.++|+.+       ..+|.+.|-+.+ ++-+..+  -.-...++.++|+++. +.+++++.||++++||+.
T Consensus        12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~   91 (311)
T KOG0277|consen   12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLT   91 (311)
T ss_pred             ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccC
Confidence            4677888 22334333       235788888875 2222222  2346789999999875 678899999999999964


Q ss_pred             C-CceeEEeeecccCeEEEecC--CCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCC-CCEEEEEeCCCc
Q 008496          346 T-EEWKQQFEFHSGPTLDVDWR--NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT-GSLLASCSDDVT  421 (563)
Q Consensus       346 ~-~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~-~~~las~s~dg~  421 (563)
                      . ...+..++-|...+.+++|.  ....|++++-|++|++|+....+.+.+|.||..-|...+|+|. .++++++|.|++
T Consensus        92 ~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~  171 (311)
T KOG0277|consen   92 MPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGT  171 (311)
T ss_pred             CCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCce
Confidence            3 34566788899999999996  4567899999999999999989999999999999999999995 689999999999


Q ss_pred             EEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC-eEEEEecCCCCCEEEEEEc
Q 008496          422 AKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG-KLLYSLNGHREPVYSLAFS  500 (563)
Q Consensus       422 i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~h~~~i~~l~~s  500 (563)
                      +++||++.......+..|..+|.++.|+.-.        ..+|++|+.|+.||+||+++- .++.++.+|.-.|..+.||
T Consensus       172 l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~--------~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~S  243 (311)
T KOG0277|consen  172 LRLWDVRSPGKFMSIEAHNSEILCCDWSKYN--------HNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFS  243 (311)
T ss_pred             EEEEEecCCCceeEEEeccceeEeecccccC--------CcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecC
Confidence            9999998654444588999999999998643        358999999999999999864 4688999999999999999


Q ss_pred             CCC-CEEEEEeCCCcEEEEecCCC-eeEEEEecCCC-EEEEEEcC-CCCEEEEEECCCeEEEEE
Q 008496          501 PTG-EYLASGSLDKSMHIWSLKEG-KIVKTYTGNGG-IFEVCWNK-EGDKIAACFANHTVCVLD  560 (563)
Q Consensus       501 pdg-~~lasgs~dg~v~iw~~~~~-~~~~~~~~~~~-i~~l~w~~-~g~~la~~~~~~~v~v~~  560 (563)
                      |.. ..||+++.|-+++|||...+ .++.++..+.. +..+.||+ ++..+|.++.|+.+.||+
T Consensus       244 ph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~  307 (311)
T KOG0277|consen  244 PHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWN  307 (311)
T ss_pred             cchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeec
Confidence            975 78899999999999999754 34555554433 67899998 567999999999999997

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.97  E-value=4.5e-31  Score=243.69  Aligned_cols=274  Identities=23%  Similarity=0.359  Sum_probs=233.6

Q ss_pred             CCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCc---eeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCce
Q 008496          273 KSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGD---LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEW  349 (563)
Q Consensus       273 ~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~---~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~  349 (563)
                      |...|..+.|-++...|++|+.|..|++|++.+.   +..++.+..++|+.+.|.++++++++++.|+.+++|++.....
T Consensus       174 h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~  253 (459)
T KOG0288|consen  174 HEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRL  253 (459)
T ss_pred             cccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhh
Confidence            4567889999999889999999999999998764   4557888889999999999999999999999999999999999


Q ss_pred             eEEeeecccCeEEEecCCCce-EEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCC
Q 008496          350 KQQFEFHSGPTLDVDWRNNVS-FATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMK  428 (563)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~  428 (563)
                      ..++..|.+.+.++.+.-... .++++.|.+|..||+....+.+++.. ...++.|..+  ...+++|..|++||+||.+
T Consensus       254 ~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~-~S~cnDI~~~--~~~~~SgH~DkkvRfwD~R  330 (459)
T KOG0288|consen  254 RHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLP-GSQCNDIVCS--ISDVISGHFDKKVRFWDIR  330 (459)
T ss_pred             hhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccc-cccccceEec--ceeeeecccccceEEEecc
Confidence            999999999999998865444 89999999999999988766655432 2334555554  5678899999999999999


Q ss_pred             CCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCC----CCCEEEEEEcCCCC
Q 008496          429 QDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGH----REPVYSLAFSPTGE  504 (563)
Q Consensus       429 ~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h----~~~i~~l~~spdg~  504 (563)
                      +..++..+..+. .|+++..++++.         -|.+++.|.++.+.|+++......+.+.    ....+.+.|||++.
T Consensus       331 s~~~~~sv~~gg-~vtSl~ls~~g~---------~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~  400 (459)
T KOG0288|consen  331 SADKTRSVPLGG-RVTSLDLSMDGL---------ELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGS  400 (459)
T ss_pred             CCceeeEeecCc-ceeeEeeccCCe---------EEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCc
Confidence            999888877665 899999999875         5677899999999999988776665431    12378999999999


Q ss_pred             EEEEEeCCCcEEEEecCCCeeEEEEec---CCCEEEEEEcCCCCEEEEEECCCeEEEE
Q 008496          505 YLASGSLDKSMHIWSLKEGKIVKTYTG---NGGIFEVCWNKEGDKIAACFANHTVCVL  559 (563)
Q Consensus       505 ~lasgs~dg~v~iw~~~~~~~~~~~~~---~~~i~~l~w~~~g~~la~~~~~~~v~v~  559 (563)
                      |+|+||.||.|+||++.++++.+....   +.+|++++|+|.|+.|+++..++.+++|
T Consensus       401 YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW  458 (459)
T KOG0288|consen  401 YVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLW  458 (459)
T ss_pred             eeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEec
Confidence            999999999999999999998877754   3469999999999999999999999987

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.97  E-value=1.1e-29  Score=258.89  Aligned_cols=285  Identities=29%  Similarity=0.472  Sum_probs=247.3

Q ss_pred             EecC-CCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCE
Q 008496          210 ILEG-HTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTL  288 (563)
Q Consensus       210 ~l~~-h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~  288 (563)
                      .+.+ |...+.+..|+  +..+++|+.|+++++|+..++..             +   .....+|.+.|.++++...+.+
T Consensus       202 ~~~~~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~-------------i---~~~l~GH~g~V~~l~~~~~~~~  263 (537)
T KOG0274|consen  202 VLLGTDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYL-------------I---LTRLVGHFGGVWGLAFPSGGDK  263 (537)
T ss_pred             eecccCcchhhhheee--cCeEEecCCCceeEEeecccceE-------------E---EeeccCCCCCceeEEEecCCCE
Confidence            3444 56778888888  67889999999999999875431             1   1112456788999999988899


Q ss_pred             EEEEeCCCeEEEEEcC-CceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecCC
Q 008496          289 LATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN  367 (563)
Q Consensus       289 l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~  367 (563)
                      |++|+.|.++++||.. |....++.+|.+.|.++...  ..++++|+.|.+|++|++.++.+++.+..|.++|.++... 
T Consensus       264 lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~-  340 (537)
T KOG0274|consen  264 LVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD-  340 (537)
T ss_pred             EEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEcc--CceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec-
Confidence            9999999999999964 77888999999999998754  4578889999999999999999999999899999999887 


Q ss_pred             CceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCC-ceeeeecccCCCEEEE
Q 008496          368 NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD-KYVHDLREHSKEIYTI  446 (563)
Q Consensus       368 ~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~-~~~~~~~~~~~~i~~~  446 (563)
                      ...+++++.|++|.+|++...+++.++.||.+.|.++.+.+. ..+++|+.|++|++||+.+. +++..+..|..-+..+
T Consensus       341 ~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l  419 (537)
T KOG0274|consen  341 EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSL  419 (537)
T ss_pred             CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCccccccc
Confidence            667888999999999999999999999999999999988765 88999999999999999999 9999999999888766


Q ss_pred             EEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecC-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCee
Q 008496          447 RWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNG-HREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKI  525 (563)
Q Consensus       447 ~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~  525 (563)
                      .+..           ..|++++.|++|++||...++++..+.+ |...|+.+++.  ...+++++.||++++||++++++
T Consensus       420 ~~~~-----------~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~  486 (537)
T KOG0274|consen  420 LLRD-----------NFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTL  486 (537)
T ss_pred             cccc-----------ceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEecccCch
Confidence            6533           2789999999999999999999999998 67889999887  56788899999999999999988


Q ss_pred             EEEE
Q 008496          526 VKTY  529 (563)
Q Consensus       526 ~~~~  529 (563)
                      .+.+
T Consensus       487 ~~~l  490 (537)
T KOG0274|consen  487 IRTL  490 (537)
T ss_pred             hhhh
Confidence            7765

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=1.5e-29  Score=248.03  Aligned_cols=273  Identities=25%  Similarity=0.470  Sum_probs=233.5

Q ss_pred             eEEEEECCCCCEEEEEeCCCeEEEEEcCC-ceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeee
Q 008496          277 VTTLDWNGEGTLLATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEF  355 (563)
Q Consensus       277 V~~l~~s~~g~~l~sg~~dg~i~vw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~  355 (563)
                      ..-++|+. .+.|++|. ...|++|+... ........+...|+++.|+++|.+|+.|..+|.|.|||..+.+....+..
T Consensus       180 ~nlldWss-~n~laVal-g~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~  257 (484)
T KOG0305|consen  180 LNLLDWSS-ANVLAVAL-GQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRG  257 (484)
T ss_pred             hhHhhccc-CCeEEEEe-cceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccC
Confidence            34578984 45666655 35899999754 43444444589999999999999999999999999999998888888888


Q ss_pred             -cccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceee-ecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCcee
Q 008496          356 -HSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKT-FAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYV  433 (563)
Q Consensus       356 -~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~-~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~  433 (563)
                       |...+.++.|. ...+.+++.++.|..++++....+.. +.+|..+|..++|++|+.++|+|+.|+.+.|||.....+.
T Consensus       258 ~h~~rvg~laW~-~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~  336 (484)
T KOG0305|consen  258 SHASRVGSLAWN-SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPK  336 (484)
T ss_pred             CcCceeEEEecc-CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCcccc
Confidence             88899999998 66778899999999999987765544 8899999999999999999999999999999999888888


Q ss_pred             eeecccCCCEEEEEEccCCCCCCCCCCcEEEEEE--eCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEE--E
Q 008496          434 HDLREHSKEIYTIRWSPTGSGTNNPNQQLILASA--SFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLAS--G  509 (563)
Q Consensus       434 ~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~--s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~las--g  509 (563)
                      ..+..|...|.+++|+|--.+        +||+|  +.|++|++||+.+|+.+..+.. ...|.+|.|++..+-|++  |
T Consensus       337 ~~~~~H~aAVKA~awcP~q~~--------lLAsGGGs~D~~i~fwn~~~g~~i~~vdt-gsQVcsL~Wsk~~kEi~sthG  407 (484)
T KOG0305|consen  337 FTFTEHTAAVKALAWCPWQSG--------LLATGGGSADRCIKFWNTNTGARIDSVDT-GSQVCSLIWSKKYKELLSTHG  407 (484)
T ss_pred             EEEeccceeeeEeeeCCCccC--------ceEEcCCCcccEEEEEEcCCCcEeccccc-CCceeeEEEcCCCCEEEEecC
Confidence            999999999999999997543        78885  5699999999999999888764 467999999999866665  3


Q ss_pred             eCCCcEEEEecCCCeeEEEEecC-CCEEEEEEcCCCCEEEEEECCCeEEEEEe
Q 008496          510 SLDKSMHIWSLKEGKIVKTYTGN-GGIFEVCWNKEGDKIAACFANHTVCVLDF  561 (563)
Q Consensus       510 s~dg~v~iw~~~~~~~~~~~~~~-~~i~~l~w~~~g~~la~~~~~~~v~v~~~  561 (563)
                      -.++.|.||+..+.+++..+.++ ..|..++|+|||..+++|.+|.++.+|++
T Consensus       408 ~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~  460 (484)
T KOG0305|consen  408 YSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNL  460 (484)
T ss_pred             CCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccc
Confidence            45778999999998888888765 46999999999999999999999999986

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=1.2e-29  Score=239.24  Aligned_cols=275  Identities=22%  Similarity=0.397  Sum_probs=233.1

Q ss_pred             CCCCeEEEEECCCCCE-EEEEeCCCeEEEEEcCCc-eeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCcee
Q 008496          273 KSKDVTTLDWNGEGTL-LATGSYDGQARIWSTNGD-LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWK  350 (563)
Q Consensus       273 ~~~~V~~l~~s~~g~~-l~sg~~dg~i~vw~~~~~-~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~  350 (563)
                      ....|++++|||...+ +|+++ .-.+.||+..+. ....+...+..|+++.|..||..|++|+..|.|+|+|..+...+
T Consensus        25 e~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iL  103 (487)
T KOG0310|consen   25 EHNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVIL  103 (487)
T ss_pred             ccCcceeEecCCCCCCceEEec-ccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHH
Confidence            3567999999995533 33333 357888886653 33456777889999999999999999999999999998777777


Q ss_pred             EEeeecccCeEEEec--CCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCC-CEEEEEeCCCcEEEEeC
Q 008496          351 QQFEFHSGPTLDVDW--RNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTG-SLLASCSDDVTAKIWNM  427 (563)
Q Consensus       351 ~~~~~~~~~~~~~~~--~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~-~~las~s~dg~i~iwd~  427 (563)
                      ..+..|..|+..+.|  .++..|+++++|+.+.+|++.+...+..+.+|+..|.|.+|+|-. .+++|||.||+||+||+
T Consensus       104 R~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~Dt  183 (487)
T KOG0310|consen  104 RQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDT  183 (487)
T ss_pred             HHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEe
Confidence            888889998877766  456788999999999999999888766899999999999999964 57899999999999999


Q ss_pred             CCC-ceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC-eEEEEecCCCCCEEEEEEcCCCCE
Q 008496          428 KQD-KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG-KLLYSLNGHREPVYSLAFSPTGEY  505 (563)
Q Consensus       428 ~~~-~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~h~~~i~~l~~spdg~~  505 (563)
                      +.. ..+.++ .|..+|-.+.+-|.|.         ++++++. ..|++||+-+| +.+..+..|...|+|+++..++..
T Consensus       184 R~~~~~v~el-nhg~pVe~vl~lpsgs---------~iasAgG-n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~r  252 (487)
T KOG0310|consen  184 RSLTSRVVEL-NHGCPVESVLALPSGS---------LIASAGG-NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTR  252 (487)
T ss_pred             ccCCceeEEe-cCCCceeeEEEcCCCC---------EEEEcCC-CeEEEEEecCCceehhhhhcccceEEEEEeecCCce
Confidence            877 455554 5899999999999875         6777764 58999999865 455555669999999999999999


Q ss_pred             EEEEeCCCcEEEEecCCCeeEEEEecCCCEEEEEEcCCCCEEEEEECCCeEEEE
Q 008496          506 LASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVL  559 (563)
Q Consensus       506 lasgs~dg~v~iw~~~~~~~~~~~~~~~~i~~l~w~~~g~~la~~~~~~~v~v~  559 (563)
                      |.+||.|+.|+|||+.+.+++..+.-.++|.+++.+|+++.+++|.+||.+.+-
T Consensus       253 LlS~sLD~~VKVfd~t~~Kvv~s~~~~~pvLsiavs~dd~t~viGmsnGlv~~r  306 (487)
T KOG0310|consen  253 LLSGSLDRHVKVFDTTNYKVVHSWKYPGPVLSIAVSPDDQTVVIGMSNGLVSIR  306 (487)
T ss_pred             EeecccccceEEEEccceEEEEeeecccceeeEEecCCCceEEEecccceeeee
Confidence            999999999999999999999999999999999999999999999999987654

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=9e-28  Score=204.83  Aligned_cols=294  Identities=27%  Similarity=0.402  Sum_probs=234.6

Q ss_pred             CCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCC---CCceEEEEEeeecccccCCCCeEEEEECCCCCEEE
Q 008496          214 HTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQN---GPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLA  290 (563)
Q Consensus       214 h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~  290 (563)
                      .+..|.+++|+|.|.+.|.|+...+.||-..+.-.....+..   .|..+.. +    +...+.+.|.|.+|||+|++|+
T Consensus        31 dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~-k----r~khhkgsiyc~~ws~~gelia  105 (350)
T KOG0641|consen   31 DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLC-K----RNKHHKGSIYCTAWSPCGELIA  105 (350)
T ss_pred             chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEe-e----eccccCccEEEEEecCccCeEE
Confidence            456799999999999999999999999986553221111111   1111111 1    1223467899999999999999


Q ss_pred             EEeCCCeEEEEEcCCc------eeEeeccCCCCEEEEEeCCC----CCEEEEee-CCCcEEEEECCCCceeEEeeecccC
Q 008496          291 TGSYDGQARIWSTNGD------LKCTLSKHKGPIFSLKWNKK----GDYLLTGS-CDKTAIVWDVKTEEWKQQFEFHSGP  359 (563)
Q Consensus       291 sg~~dg~i~vw~~~~~------~~~~~~~h~~~V~~l~~~~~----~~~l~s~s-~D~~v~iwd~~~~~~~~~~~~~~~~  359 (563)
                      +|+.|.+|++.-.+..      ....+.-|.+.|..++|-.+    +..|++++ .|..|.+-|..+++-.+.+..|.+.
T Consensus       106 tgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtgh  185 (350)
T KOG0641|consen  106 TGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGH  185 (350)
T ss_pred             ecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCccc
Confidence            9999999999765432      23467779999999999643    34566544 4667777788899888899999999


Q ss_pred             eEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecC--C-----CcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCce
Q 008496          360 TLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAG--H-----QGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKY  432 (563)
Q Consensus       360 ~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~--h-----~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~  432 (563)
                      ++.+---++..|++++.|.+|++||++-+..+.++..  |     ...|.+++..|.|++|++|..|....+||++.+++
T Consensus       186 ilalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~  265 (350)
T KOG0641|consen  186 ILALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRM  265 (350)
T ss_pred             EEEEEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCce
Confidence            9888655677899999999999999998887776642  2     24689999999999999999999999999999999


Q ss_pred             eeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC----eEEEEecCCCCCEEEEEEcCCCCEEEE
Q 008496          433 VHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG----KLLYSLNGHREPVYSLAFSPTGEYLAS  508 (563)
Q Consensus       433 ~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~----~~~~~~~~h~~~i~~l~~spdg~~las  508 (563)
                      ++.+..|+..|.++.|+|..         .+|++||.|..|++-|+.-.    -.+..+..|...+..+.|+|..--+++
T Consensus       266 iq~f~phsadir~vrfsp~a---------~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfis  336 (350)
T KOG0641|consen  266 IQRFHPHSADIRCVRFSPGA---------HYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFIS  336 (350)
T ss_pred             eeeeCCCccceeEEEeCCCc---------eEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeee
Confidence            99999999999999999965         48999999999999998631    234455678888999999999988899


Q ss_pred             EeCCCcEEEEecC
Q 008496          509 GSLDKSMHIWSLK  521 (563)
Q Consensus       509 gs~dg~v~iw~~~  521 (563)
                      .|.|.++.+|-+.
T Consensus       337 ssadkt~tlwa~~  349 (350)
T KOG0641|consen  337 SSADKTATLWALN  349 (350)
T ss_pred             ccCcceEEEeccC
Confidence            9999999999753

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.97  E-value=4.4e-29  Score=244.33  Aligned_cols=335  Identities=23%  Similarity=0.411  Sum_probs=262.9

Q ss_pred             eEecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCE
Q 008496          209 TILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTL  288 (563)
Q Consensus       209 ~~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~  288 (563)
                      .++.||.+.|+++.|+|.+..|+++|.|.++.+|.-.+.+          .+....-..+...+........-|+|+++.
T Consensus       261 all~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~t----------GiWv~~vRlGe~gg~a~GF~g~lw~~n~~~  330 (764)
T KOG1063|consen  261 ALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENT----------GIWVDVVRLGEVGGSAGGFWGGLWSPNSNV  330 (764)
T ss_pred             hhhcCcccceEEEEEccchhhheecccCcceEEEecCCcc----------ceEEEEEEeecccccccceeeEEEcCCCCE
Confidence            4567999999999999999999999999999999854321          112111122333334456888999999999


Q ss_pred             EEEEeCCCeEEEEEcCC----ceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCC--Ccee--EEeeecccCe
Q 008496          289 LATGSYDGQARIWSTNG----DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKT--EEWK--QQFEFHSGPT  360 (563)
Q Consensus       289 l~sg~~dg~i~vw~~~~----~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~--~~~~--~~~~~~~~~~  360 (563)
                      +++-++.|..++|....    .....+.+|.+.|..+.|+|.|.+|++.|.|.|-|++-...  .++.  ...+.|.-..
T Consensus       331 ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl  410 (764)
T KOG1063|consen  331 IIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDL  410 (764)
T ss_pred             EEEecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccc
Confidence            99999999999998333    23345789999999999999999999999999999986541  1122  1234566667


Q ss_pred             EEEecCC-CceEEEEeCCCeEEEEEcCC--------------------------------Ccc-----------------
Q 008496          361 LDVDWRN-NVSFATSSTDNMIYVCKIGE--------------------------------NRP-----------------  390 (563)
Q Consensus       361 ~~~~~~~-~~~~~~~~~d~~i~~~~~~~--------------------------------~~~-----------------  390 (563)
                      .++.+.+ +..|+++.....+++++...                                +++                 
T Consensus       411 ~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~e  490 (764)
T KOG1063|consen  411 TCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAE  490 (764)
T ss_pred             eeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeee
Confidence            7788877 78888888888777765311                                000                 


Q ss_pred             ---------------------------eeeecCCCcceeEEEECCCCCEEEEEeCCC-----cEEEEeCCCCceeeeecc
Q 008496          391 ---------------------------IKTFAGHQGEVNCVKWDPTGSLLASCSDDV-----TAKIWNMKQDKYVHDLRE  438 (563)
Q Consensus       391 ---------------------------~~~~~~h~~~i~~~~~~~~~~~las~s~dg-----~i~iwd~~~~~~~~~~~~  438 (563)
                                                 +..+.||..+|.+++.+|+++++||++...     .|++|+..+...+..+..
T Consensus       491 t~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~  570 (764)
T KOG1063|consen  491 TPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEG  570 (764)
T ss_pred             cccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecc
Confidence                                       122458889999999999999999998754     589999999888889999


Q ss_pred             cCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeE----EEEecCCCCCEEEEEEcCCCCEEEEEeCCCc
Q 008496          439 HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKL----LYSLNGHREPVYSLAFSPTGEYLASGSLDKS  514 (563)
Q Consensus       439 ~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~----~~~~~~h~~~i~~l~~spdg~~lasgs~dg~  514 (563)
                      |+-.|+.++|+|++.         +|++.|.|.++.+|.......    ....+.|+.-|.+..|+|++.++||+|.|++
T Consensus       571 HsLTVT~l~FSpdg~---------~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~  641 (764)
T KOG1063|consen  571 HSLTVTRLAFSPDGR---------YLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKK  641 (764)
T ss_pred             cceEEEEEEECCCCc---------EEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCce
Confidence            999999999999987         899999999999998754321    2236789999999999999999999999999


Q ss_pred             EEEEecCCC--eeEE---EEecCCCEEEEEEcC-----CCCEEEEEECCCeEEEEEee
Q 008496          515 MHIWSLKEG--KIVK---TYTGNGGIFEVCWNK-----EGDKIAACFANHTVCVLDFR  562 (563)
Q Consensus       515 v~iw~~~~~--~~~~---~~~~~~~i~~l~w~~-----~g~~la~~~~~~~v~v~~~~  562 (563)
                      |+||...+.  +.+.   ..+....++.++|.|     .+..+|+|...|.+.||.++
T Consensus       642 VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~  699 (764)
T KOG1063|consen  642 VKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRK  699 (764)
T ss_pred             EEEEeccCchhhhhhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEecc
Confidence            999999877  3322   233456788888876     24488999999999999875

>PTZ00421 coronin; Provisional

Probab=99.97  E-value=7.4e-29  Score=252.61  Aligned_cols=275  Identities=17%  Similarity=0.220  Sum_probs=204.5

Q ss_pred             CCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCC-CCCCCceEEEEEeeecccccCCCCeEEEEECC-CCCEEEEE
Q 008496          215 TSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGG-AQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG-EGTLLATG  292 (563)
Q Consensus       215 ~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~-~g~~l~sg  292 (563)
                      -..|.....++++..+++++.+..+..|+...+..... ...+...     .......+|...|++++|+| ++++|++|
T Consensus        20 ~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~-----~~~~~l~GH~~~V~~v~fsP~d~~~LaSg   94 (493)
T PTZ00421         20 FLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLA-----SNPPILLGQEGPIIDVAFNPFDPQKLFTA   94 (493)
T ss_pred             eeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCC-----CCCceEeCCCCCEEEEEEcCCCCCEEEEE
Confidence            34566777788888888899999999998654321100 0000000     00001234678899999999 88999999


Q ss_pred             eCCCeEEEEEcCCc--------eeEeeccCCCCEEEEEeCCCC-CEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEE
Q 008496          293 SYDGQARIWSTNGD--------LKCTLSKHKGPIFSLKWNKKG-DYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDV  363 (563)
Q Consensus       293 ~~dg~i~vw~~~~~--------~~~~~~~h~~~V~~l~~~~~~-~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~  363 (563)
                      +.||.|++|+....        ....+.+|...|.+++|+|++ ++|++|+.|++|+|||+.++..              
T Consensus        95 S~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~--------------  160 (493)
T PTZ00421         95 SEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKA--------------  160 (493)
T ss_pred             eCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeE--------------
Confidence            99999999997532        345788999999999999986 6899999999999999976532              


Q ss_pred             ecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccCCC-
Q 008496          364 DWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKE-  442 (563)
Q Consensus       364 ~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~-  442 (563)
                                                 +..+.+|...|.+++|+|+|.+|++|+.|++|+|||+++++.+..+..|.+. 
T Consensus       161 ---------------------------~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~  213 (493)
T PTZ00421        161 ---------------------------VEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAK  213 (493)
T ss_pred             ---------------------------EEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCc
Confidence                                       2345678889999999999999999999999999999999998888888765 


Q ss_pred             EEEEEEccCCCCCCCCCCcEEEEEE---eCCCeEEEEeCCCCe-EEEEecCC-CCCEEEEEEcCCCCEEEEEe-CCCcEE
Q 008496          443 IYTIRWSPTGSGTNNPNQQLILASA---SFDSTVKLWDVELGK-LLYSLNGH-REPVYSLAFSPTGEYLASGS-LDKSMH  516 (563)
Q Consensus       443 i~~~~~~p~~~~~~~~~~~~~l~s~---s~dg~i~iwd~~~~~-~~~~~~~h-~~~i~~l~~spdg~~lasgs-~dg~v~  516 (563)
                      +..+.|.+++.        .++.+|   +.|+.|++||+++.. .+.....+ ...+....|+|++++|++|+ .|+.|+
T Consensus       214 ~~~~~w~~~~~--------~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Ir  285 (493)
T PTZ00421        214 SQRCLWAKRKD--------LIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIR  285 (493)
T ss_pred             ceEEEEcCCCC--------eEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEE
Confidence            34677887643        244433   358999999998754 33333323 34566778999999999887 599999


Q ss_pred             EEecCCCeeEEEEec--CCCEEEEEEcCC
Q 008496          517 IWSLKEGKIVKTYTG--NGGIFEVCWNKE  543 (563)
Q Consensus       517 iw~~~~~~~~~~~~~--~~~i~~l~w~~~  543 (563)
                      +||+.+++++..+..  ...+..++|.|.
T Consensus       286 iwdl~~~~~~~~~~~~s~~~~~g~~~~pk  314 (493)
T PTZ00421        286 CFELMNERLTFCSSYSSVEPHKGLCMMPK  314 (493)
T ss_pred             EEEeeCCceEEEeeccCCCCCcceEeccc
Confidence            999999987765533  234556666663

>PTZ00421 coronin; Provisional

Probab=99.97  E-value=8.9e-29  Score=252.02  Aligned_cols=244  Identities=20%  Similarity=0.347  Sum_probs=197.4

Q ss_pred             CeEEEEECCCCCEEEEEeCCCeEEEEEcCCcee--------------EeeccCCCCEEEEEeCC-CCCEEEEeeCCCcEE
Q 008496          276 DVTTLDWNGEGTLLATGSYDGQARIWSTNGDLK--------------CTLSKHKGPIFSLKWNK-KGDYLLTGSCDKTAI  340 (563)
Q Consensus       276 ~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~~--------------~~~~~h~~~V~~l~~~~-~~~~l~s~s~D~~v~  340 (563)
                      .|.....++++..+++++.+..+..|+..|...              ..+.+|.++|++++|+| ++++|++|+.|++|+
T Consensus        22 ~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIk  101 (493)
T PTZ00421         22 NVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIM  101 (493)
T ss_pred             ccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEE
Confidence            344555566767778888888888887654321              13678999999999999 788999999999999


Q ss_pred             EEECCCCceeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCC-CEEEEEeCC
Q 008496          341 VWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTG-SLLASCSDD  419 (563)
Q Consensus       341 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~-~~las~s~d  419 (563)
                      +||+.++....                                  ....++..+.+|...|.+++|+|++ ++|++|+.|
T Consensus       102 IWdi~~~~~~~----------------------------------~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~D  147 (493)
T PTZ00421        102 GWGIPEEGLTQ----------------------------------NISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGAD  147 (493)
T ss_pred             EEecCCCcccc----------------------------------ccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCC
Confidence            99987542110                                  0123566788999999999999985 699999999


Q ss_pred             CcEEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCC-EEEEE
Q 008496          420 VTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREP-VYSLA  498 (563)
Q Consensus       420 g~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~-i~~l~  498 (563)
                      ++|+|||+.++..+..+..|...|.+++|+|++.         +|++++.|++|+|||+++++.+..+.+|... +..+.
T Consensus       148 gtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~---------lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~  218 (493)
T PTZ00421        148 MVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGS---------LLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCL  218 (493)
T ss_pred             CEEEEEECCCCeEEEEEcCCCCceEEEEEECCCC---------EEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEE
Confidence            9999999999998889999999999999999875         7999999999999999999999999989765 45678


Q ss_pred             EcCCCCEEEEEe----CCCcEEEEecCCCe-eEEEEe--cCCCEEEEEEcCCCCEEEEEE-CCCeEEEEEee
Q 008496          499 FSPTGEYLASGS----LDKSMHIWSLKEGK-IVKTYT--GNGGIFEVCWNKEGDKIAACF-ANHTVCVLDFR  562 (563)
Q Consensus       499 ~spdg~~lasgs----~dg~v~iw~~~~~~-~~~~~~--~~~~i~~l~w~~~g~~la~~~-~~~~v~v~~~~  562 (563)
                      |+|++..|++++    .|+.|++||+++.. .+....  ....+....|+++++.|++|+ .|+.|.+||++
T Consensus       219 w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~  290 (493)
T PTZ00421        219 WAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELM  290 (493)
T ss_pred             EcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEee
Confidence            999988887654    47899999998754 333332  234566778999999999886 59999999986

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=7.4e-30  Score=256.42  Aligned_cols=291  Identities=21%  Similarity=0.374  Sum_probs=207.0

Q ss_pred             CCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEE--ECCCCCEEE
Q 008496          213 GHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLD--WNGEGTLLA  290 (563)
Q Consensus       213 ~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~--~s~~g~~l~  290 (563)
                      +|.+.|.++.||+||++||+||.|+.||||.+...................  ..  ......+++.-.  -.......-
T Consensus       265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~--~~--~~s~~~p~~s~~~~~~~~~s~~~  340 (712)
T KOG0283|consen  265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFE--YN--ANSQIEPSTSSEEKISSRTSSSR  340 (712)
T ss_pred             ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhh--hh--hccccCccccccccccccccccc
Confidence            899999999999999999999999999999986532111000000000000  00  000000111100  000011111


Q ss_pred             EEeCCCeEEE----EEcCCceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecC
Q 008496          291 TGSYDGQARI----WSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR  366 (563)
Q Consensus       291 sg~~dg~i~v----w~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~  366 (563)
                      .+.....+.+    +-...+..+.+.+|.+.|..|.|+.+ ++|+++|+|+||++|++...+++..|             
T Consensus       341 ~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F-------------  406 (712)
T KOG0283|consen  341 KGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVF-------------  406 (712)
T ss_pred             cccCCccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEE-------------
Confidence            2222222221    12234567789999999999999976 48999999999999999877665543             


Q ss_pred             CCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECC-CCCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEE
Q 008496          367 NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDP-TGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYT  445 (563)
Q Consensus       367 ~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~-~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~  445 (563)
                                                   .|...|+||+|+| |.++|++||-||.+|||++...+.+.- .....-|++
T Consensus       407 -----------------------------~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W-~Dl~~lITA  456 (712)
T KOG0283|consen  407 -----------------------------SHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDW-NDLRDLITA  456 (712)
T ss_pred             -----------------------------ecCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEee-hhhhhhhee
Confidence                                         2888999999999 678999999999999999987766543 334478999


Q ss_pred             EEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEec---------CCCCCEEEEEEcCCC-CEEEEEeCCCcE
Q 008496          446 IRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLN---------GHREPVYSLAFSPTG-EYLASGSLDKSM  515 (563)
Q Consensus       446 ~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~---------~h~~~i~~l~~spdg-~~lasgs~dg~v  515 (563)
                      ++|.|+|.         ..+.|+.+|.+++|++...+......         .|. .|+.+.|.|.. ..|.+.+.|.+|
T Consensus       457 vcy~PdGk---------~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~-rITG~Q~~p~~~~~vLVTSnDSrI  526 (712)
T KOG0283|consen  457 VCYSPDGK---------GAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGK-RITGLQFFPGDPDEVLVTSNDSRI  526 (712)
T ss_pred             EEeccCCc---------eEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCc-eeeeeEecCCCCCeEEEecCCCce
Confidence            99999986         57789999999999998766654432         133 79999998754 346667889999


Q ss_pred             EEEecCCCeeEEEEecC---CCEEEEEEcCCCCEEEEEECCCeEEEEEe
Q 008496          516 HIWSLKEGKIVKTYTGN---GGIFEVCWNKEGDKIAACFANHTVCVLDF  561 (563)
Q Consensus       516 ~iw~~~~~~~~~~~~~~---~~i~~l~w~~~g~~la~~~~~~~v~v~~~  561 (563)
                      +|||.++..++..|++.   ..-...+|+.||++|+.++.|..|.||+.
T Consensus       527 RI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~  575 (712)
T KOG0283|consen  527 RIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKN  575 (712)
T ss_pred             EEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeC
Confidence            99999888888887753   22356789999999999999999999986

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.97  E-value=5.9e-30  Score=221.34  Aligned_cols=287  Identities=23%  Similarity=0.373  Sum_probs=236.4

Q ss_pred             eEecCCCCceEEEEECC---CCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCC
Q 008496          209 TILEGHTSEVCACAWSP---AGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE  285 (563)
Q Consensus       209 ~~l~~h~~~V~~~~~sp---~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~  285 (563)
                      .+..||+-+|-.++|||   +|-+|.+++.|+.-.+=+=.+|..             +..+    .+|.+.|.....+.+
T Consensus         8 l~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdw-------------igtf----eghkgavw~~~l~~n   70 (334)
T KOG0278|consen    8 LTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDW-------------IGTF----EGHKGAVWSATLNKN   70 (334)
T ss_pred             eEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCc-------------EEee----eccCcceeeeecCch
Confidence            35689999999999997   678999999999766544333321             1122    345678999999999


Q ss_pred             CCEEEEEeCCCeEEEEEc-CCceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCce-eEEeeecccCeEEE
Q 008496          286 GTLLATGSYDGQARIWST-NGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEW-KQQFEFHSGPTLDV  363 (563)
Q Consensus       286 g~~l~sg~~dg~i~vw~~-~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~-~~~~~~~~~~~~~~  363 (563)
                      ....++++.|-+.+|||. .|.....| .|+--|.+++|+.+.++|++|+.++.++|+|++..+. ...+..|.+.+..+
T Consensus        71 a~~aasaaadftakvw~a~tgdelhsf-~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v  149 (334)
T KOG0278|consen   71 ATRAASAAADFTAKVWDAVTGDELHSF-EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTV  149 (334)
T ss_pred             hhhhhhhcccchhhhhhhhhhhhhhhh-hhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeE
Confidence            999999999999999994 56666666 4888999999999999999999999999999976543 44677888889888


Q ss_pred             ecC-CCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccCCC
Q 008496          364 DWR-NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKE  442 (563)
Q Consensus       364 ~~~-~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~  442 (563)
                      -|. .+..|+++..|++|++||..++..++++. ....|+++.++++|.+|. -..-+.|++||.++-..+..+... ..
T Consensus       150 ~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilT-ia~gssV~Fwdaksf~~lKs~k~P-~n  226 (334)
T KOG0278|consen  150 LWCHEDKCILSSADDKTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILT-IAYGSSVKFWDAKSFGLLKSYKMP-CN  226 (334)
T ss_pred             EEeccCceEEeeccCCceEEEEeccCcEEEEEe-cCCCCcceeeccCCCEEE-EecCceeEEeccccccceeeccCc-cc
Confidence            884 56778888999999999999999888775 456899999999999874 456678999999988877765533 34


Q ss_pred             EEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEe-cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q 008496          443 IYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSL-NGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLK  521 (563)
Q Consensus       443 i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~  521 (563)
                      |.+...+|..         .++++|+.|..++.||..+|..+..+ ++|.+||.|+.|||||...|+||.||+|++|.+.
T Consensus       227 V~SASL~P~k---------~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~  297 (334)
T KOG0278|consen  227 VESASLHPKK---------EFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTT  297 (334)
T ss_pred             cccccccCCC---------ceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEec
Confidence            6666666654         26889999999999999999998885 8999999999999999999999999999999987


Q ss_pred             CCee
Q 008496          522 EGKI  525 (563)
Q Consensus       522 ~~~~  525 (563)
                      .++.
T Consensus       298 ~~~~  301 (334)
T KOG0278|consen  298 PGKT  301 (334)
T ss_pred             CCCc
Confidence            6553

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.97  E-value=2.8e-29  Score=223.51  Aligned_cols=259  Identities=27%  Similarity=0.490  Sum_probs=201.4

Q ss_pred             ceeEecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCC---------cCCCCCCCceEEEEEeeecccccCCCCe
Q 008496          207 DVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTS---------NGGAQNGPLNVLVLKHVKGRTNEKSKDV  277 (563)
Q Consensus       207 ~~~~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~V  277 (563)
                      ....+..|+.++.+.+|||||.++||||.|..|+|.|++....         ....+.+|    +++.+    ..|..+|
T Consensus       104 Et~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hP----vIRTl----YDH~dev  175 (430)
T KOG0640|consen  104 ETKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHP----VIRTL----YDHVDEV  175 (430)
T ss_pred             ceEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCc----eEeeh----hhccCcc
Confidence            4567889999999999999999999999999999999863210         01111111    22222    3456789


Q ss_pred             EEEEECCCCCEEEEEeCCCeEEEEEcCCce-eE--eeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEee
Q 008496          278 TTLDWNGEGTLLATGSYDGQARIWSTNGDL-KC--TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFE  354 (563)
Q Consensus       278 ~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~-~~--~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~  354 (563)
                      +++.|+|....|++|+.|++|+++|..... +.  ..-.-..+|.++.|+|.|.+|+.|..-.++++||+++.++     
T Consensus       176 n~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qc-----  250 (430)
T KOG0640|consen  176 NDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQC-----  250 (430)
T ss_pred             cceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeE-----
Confidence            999999999999999999999999975421 11  1122456899999999999999999999999999987643     


Q ss_pred             ecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceee
Q 008496          355 FHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVH  434 (563)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~  434 (563)
                                      |+++-.                 -.+|.+.|+++.+++.+++.+|+|.||.|+|||--+.+++.
T Consensus       251 ----------------fvsanP-----------------d~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~  297 (430)
T KOG0640|consen  251 ----------------FVSANP-----------------DDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVR  297 (430)
T ss_pred             ----------------eeecCc-----------------ccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHH
Confidence                            222111                 13589999999999999999999999999999999999998


Q ss_pred             eec-ccC-CCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEec------------------------
Q 008496          435 DLR-EHS-KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLN------------------------  488 (563)
Q Consensus       435 ~~~-~~~-~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~------------------------  488 (563)
                      ++. +|. ..|.+..|..++.         ++++.++|..+++|.+.+++++.+..                        
T Consensus       298 t~~~AH~gsevcSa~Ftkn~k---------yiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl  368 (430)
T KOG0640|consen  298 TIGNAHGGSEVCSAVFTKNGK---------YILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVL  368 (430)
T ss_pred             HHHhhcCCceeeeEEEccCCe---------EEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEE
Confidence            875 454 4688888988775         78899999999999999888776553                        


Q ss_pred             -------------------------CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEec
Q 008496          489 -------------------------GHREPVYSLAFSPTGEYLASGSLDKSMHIWSL  520 (563)
Q Consensus       489 -------------------------~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~  520 (563)
                                               +|.+++..+.-||.+..+.+||.|.++++|-.
T Consensus       369 ~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyr  425 (430)
T KOG0640|consen  369 FPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYR  425 (430)
T ss_pred             ccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceeeeeee
Confidence                                     46666677777777777777777777777753

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=2.5e-27  Score=202.15  Aligned_cols=278  Identities=24%  Similarity=0.461  Sum_probs=227.5

Q ss_pred             CCCeEEEEECCCCCEEEEEeCCCeEEEEEcCC---------------c-eeEeeccCCCCEEEEEeCCCCCEEEEeeCCC
Q 008496          274 SKDVTTLDWNGEGTLLATGSYDGQARIWSTNG---------------D-LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDK  337 (563)
Q Consensus       274 ~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~---------------~-~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~  337 (563)
                      +..|.+++|+|.|.+.++|+...+.||.....               . +...-..|++.|+|.+|+|+|..+++|+.|+
T Consensus        32 sqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsndk  111 (350)
T KOG0641|consen   32 SQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDK  111 (350)
T ss_pred             hhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCCc
Confidence            46799999999999999999999999875211               0 1123356899999999999999999999999


Q ss_pred             cEEEEECCCCcee-----EEeeecccCeEEEecCCC-----ceEEEE-eCCCeEEEEEcCCCcceeeecCCCcceeEEEE
Q 008496          338 TAIVWDVKTEEWK-----QQFEFHSGPTLDVDWRNN-----VSFATS-STDNMIYVCKIGENRPIKTFAGHQGEVNCVKW  406 (563)
Q Consensus       338 ~v~iwd~~~~~~~-----~~~~~~~~~~~~~~~~~~-----~~~~~~-~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~  406 (563)
                      +|++.-.+...+.     -.|..|.+.+.++.|.++     ..++++ ..|..|++-|.+.+++...+.||++.|.++ +
T Consensus       112 ~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilal-y  190 (350)
T KOG0641|consen  112 TIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILAL-Y  190 (350)
T ss_pred             eEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEE-E
Confidence            9998765443322     257789999999988643     234443 467789999999999999999999999877 3


Q ss_pred             CCCCCEEEEEeCCCcEEEEeCCCCceeeeecc--c-----CCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCC
Q 008496          407 DPTGSLLASCSDDVTAKIWNMKQDKYVHDLRE--H-----SKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVE  479 (563)
Q Consensus       407 ~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~--~-----~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~  479 (563)
                      +-++-++++||.|.+||+||++-..++.++..  |     ...|.+++..|.|.         +|++|-.|....+||++
T Consensus       191 swn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgr---------ll~sg~~dssc~lydir  261 (350)
T KOG0641|consen  191 SWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGR---------LLASGHADSSCMLYDIR  261 (350)
T ss_pred             EecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcc---------eeeeccCCCceEEEEee
Confidence            45688999999999999999998888776532  2     35688999999886         89999999999999999


Q ss_pred             CCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCC---e--eEEEEecCCCEEEEEEcCCCCEEEEEECCC
Q 008496          480 LGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEG---K--IVKTYTGNGGIFEVCWNKEGDKIAACFANH  554 (563)
Q Consensus       480 ~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~---~--~~~~~~~~~~i~~l~w~~~g~~la~~~~~~  554 (563)
                      -++.+..+-.|...|.++.|||...||.+||.|..|++-|+...   +  .+..-.....+..+.|+|..-.+...+.|+
T Consensus       262 g~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadk  341 (350)
T KOG0641|consen  262 GGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADK  341 (350)
T ss_pred             CCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcc
Confidence            99999999999999999999999999999999999999998632   1  122223445677889999988788888999


Q ss_pred             eEEEEEe
Q 008496          555 TVCVLDF  561 (563)
Q Consensus       555 ~v~v~~~  561 (563)
                      ++.+|-+
T Consensus       342 t~tlwa~  348 (350)
T KOG0641|consen  342 TATLWAL  348 (350)
T ss_pred             eEEEecc
Confidence            9999854

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=2.7e-27  Score=212.60  Aligned_cols=278  Identities=22%  Similarity=0.339  Sum_probs=220.2

Q ss_pred             ecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEE
Q 008496          211 LEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLA  290 (563)
Q Consensus       211 l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~  290 (563)
                      ++.-.+.|+++.|+++|.+|++++.|.+++|||..+++...             ..    ..+...|..++|....+.++
T Consensus        10 f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~-------------ti----~skkyG~~~~~Fth~~~~~i   72 (311)
T KOG1446|consen   10 FRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVK-------------TI----NSKKYGVDLACFTHHSNTVI   72 (311)
T ss_pred             cccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceee-------------Ee----ecccccccEEEEecCCceEE
Confidence            33345779999999999999999999999999988765321             11    11234577778877666676


Q ss_pred             EEeC--CCeEEEEEcC-CceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecCC
Q 008496          291 TGSY--DGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN  367 (563)
Q Consensus       291 sg~~--dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~  367 (563)
                      .++.  |.+||.-++. .+.+..|.+|+..|.+|+.+|-+..+++++.|++|++||++..++...+..            
T Consensus        73 ~sStk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~------------  140 (311)
T KOG1446|consen   73 HSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNL------------  140 (311)
T ss_pred             EccCCCCCceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEec------------
Confidence            6666  8899999975 567778999999999999999999999999999999999987654332211            


Q ss_pred             CceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCC--ceeeeec---ccCCC
Q 008496          368 NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD--KYVHDLR---EHSKE  442 (563)
Q Consensus       368 ~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~--~~~~~~~---~~~~~  442 (563)
                                                     ..-..++|+|.|-++|++.....|++||++.-  .+..++.   ....+
T Consensus       141 -------------------------------~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~e  189 (311)
T KOG1446|consen  141 -------------------------------SGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAE  189 (311)
T ss_pred             -------------------------------CCCcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccc
Confidence                                           11225789999999999998889999999853  3444443   33567


Q ss_pred             EEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCE---EEEEEcCCCCEEEEEeCCCcEEEEe
Q 008496          443 IYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPV---YSLAFSPTGEYLASGSLDKSMHIWS  519 (563)
Q Consensus       443 i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i---~~l~~spdg~~lasgs~dg~v~iw~  519 (563)
                      .+.+.|+|+|+         +|+.+...+.+++.|.-+|..+.++..+...-   ...+|+|||+++.+|+.||+|++|+
T Consensus       190 w~~l~FS~dGK---------~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~  260 (311)
T KOG1446|consen  190 WTDLEFSPDGK---------SILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWN  260 (311)
T ss_pred             eeeeEEcCCCC---------EEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEE
Confidence            89999999997         56667788999999999999988887765432   5789999999999999999999999


Q ss_pred             cCCCeeEEEEec--CCCEEEEEEcCCCCEEEEEECCCeEEEE
Q 008496          520 LKEGKIVKTYTG--NGGIFEVCWNKEGDKIAACFANHTVCVL  559 (563)
Q Consensus       520 ~~~~~~~~~~~~--~~~i~~l~w~~~g~~la~~~~~~~v~v~  559 (563)
                      +++|+.+..+.+  .+.+..+.|+|.-..+|+++..  +.+|
T Consensus       261 ~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~s~--l~fw  300 (311)
T KOG1446|consen  261 LETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSASSN--LVFW  300 (311)
T ss_pred             cCCCcEeeEecCCCCCCccccccCCceeeeeecCce--EEEE
Confidence            999999999887  3557788999998888887554  4444

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.97  E-value=9.1e-29  Score=216.16  Aligned_cols=286  Identities=21%  Similarity=0.341  Sum_probs=225.8

Q ss_pred             eEecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCE
Q 008496          209 TILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTL  288 (563)
Q Consensus       209 ~~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~  288 (563)
                      ..|.||.-+++.+.++.+|.+|+|++.|.++.+|---+|..             +    +.+.+|.+.|.|++.+-+.++
T Consensus         4 i~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGer-------------l----Gty~GHtGavW~~Did~~s~~   66 (327)
T KOG0643|consen    4 ILLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGER-------------L----GTYDGHTGAVWCCDIDWDSKH   66 (327)
T ss_pred             cccccCccccceEEecCCCcEEEEecCCCCceEEEecCCce-------------e----eeecCCCceEEEEEecCCcce
Confidence            46789999999999999999999999999999997655432             1    334456789999999999999


Q ss_pred             EEEEeCCCeEEEEEcC-CceeEeeccCCCCEEEEEeCCCCCEEEEeeCC-----CcEEEEECC-------CCceeEEeee
Q 008496          289 LATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCD-----KTAIVWDVK-------TEEWKQQFEF  355 (563)
Q Consensus       289 l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D-----~~v~iwd~~-------~~~~~~~~~~  355 (563)
                      +++|+.|.++++||.. |+.+..+ ....+|..+.|+++|++++.+..+     +.|.++|++       ..+....+..
T Consensus        67 liTGSAD~t~kLWDv~tGk~la~~-k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t  145 (327)
T KOG0643|consen   67 LITGSADQTAKLWDVETGKQLATW-KTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPT  145 (327)
T ss_pred             eeeccccceeEEEEcCCCcEEEEe-ecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecC
Confidence            9999999999999976 5555444 467899999999999988876543     578999987       3344455556


Q ss_pred             cccCeEEEecCCC-ceEEEEeCCCeEEEEEcCCCc-ceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCcee
Q 008496          356 HSGPTLDVDWRNN-VSFATSSTDNMIYVCKIGENR-PIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYV  433 (563)
Q Consensus       356 ~~~~~~~~~~~~~-~~~~~~~~d~~i~~~~~~~~~-~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~  433 (563)
                      +...+..+-|... ..++++..||.|..|++.++. .+..-.-|...|+.++++||..+++|+|.|.+.++||..+-..+
T Consensus       146 ~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~  225 (327)
T KOG0643|consen  146 PDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVL  225 (327)
T ss_pred             CccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeE
Confidence            6667777888654 566888999999999999864 45556779999999999999999999999999999999998887


Q ss_pred             eeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCC-eEEEEeCCCC------------eEEEEecCCCCCEEEEEEc
Q 008496          434 HDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDS-TVKLWDVELG------------KLLYSLNGHREPVYSLAFS  500 (563)
Q Consensus       434 ~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg-~i~iwd~~~~------------~~~~~~~~h~~~i~~l~~s  500 (563)
                      .++. ...++.+.+++|...        .+++.|+.+- .|.-=+.+.|            +.+..+++|-+||++++|+
T Consensus       226 Kty~-te~PvN~aaisP~~d--------~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfh  296 (327)
T KOG0643|consen  226 KTYT-TERPVNTAAISPLLD--------HVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFH  296 (327)
T ss_pred             EEee-ecccccceecccccc--------eEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEEC
Confidence            7765 356788888888643        2444444332 1211122222            3455678999999999999


Q ss_pred             CCCCEEEEEeCCCcEEEEecC
Q 008496          501 PTGEYLASGSLDKSMHIWSLK  521 (563)
Q Consensus       501 pdg~~lasgs~dg~v~iw~~~  521 (563)
                      |+|+..++|+.||.|++.-..
T Consensus       297 PdGksYsSGGEDG~VR~h~Fd  317 (327)
T KOG0643|consen  297 PDGKSYSSGGEDGYVRLHHFD  317 (327)
T ss_pred             CCCcccccCCCCceEEEEEec
Confidence            999999999999999987654

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.97  E-value=8.5e-27  Score=232.88  Aligned_cols=328  Identities=20%  Similarity=0.297  Sum_probs=249.5

Q ss_pred             CceeEecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCC
Q 008496          206 SDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE  285 (563)
Q Consensus       206 ~~~~~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~  285 (563)
                      ..+.+++++.+.|+++.=+|--.++|.|-.+|+|.|+++..++..          ..+++       ..+.|+.++|.-|
T Consensus       193 K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil----------~sFk~-------d~g~VtslSFrtD  255 (910)
T KOG1539|consen  193 KVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKIL----------MSFKQ-------DWGRVTSLSFRTD  255 (910)
T ss_pred             cEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEE----------EEEEc-------cccceeEEEeccC
Confidence            346788999999999999999999999999999999999765421          12222       1367999999999


Q ss_pred             CCE-EEEEeCCCeEEEEEcCCceeE--eeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCc----eeEEeeeccc
Q 008496          286 GTL-LATGSYDGQARIWSTNGDLKC--TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEE----WKQQFEFHSG  358 (563)
Q Consensus       286 g~~-l~sg~~dg~i~vw~~~~~~~~--~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~----~~~~~~~~~~  358 (563)
                      |+. +++|+..|.+.+||++++...  ....|.+.|..+.|.|....+++++.|+++++|=..++.    ..+.-.+|..
T Consensus       256 G~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~  335 (910)
T KOG1539|consen  256 GNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSA  335 (910)
T ss_pred             CCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCC
Confidence            965 566777799999999876443  345799999999999999999999999999998444322    2222233444


Q ss_pred             CeEEEecCC--Cce-----------------------------------------------------------------E
Q 008496          359 PTLDVDWRN--NVS-----------------------------------------------------------------F  371 (563)
Q Consensus       359 ~~~~~~~~~--~~~-----------------------------------------------------------------~  371 (563)
                      |..++.+..  ...                                                                 +
T Consensus       336 Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~  415 (910)
T KOG1539|consen  336 PPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVI  415 (910)
T ss_pred             CchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhccee
Confidence            444443321  111                                                                 2


Q ss_pred             EEEeCCCeEEEEEcCCCcc-eeeec-----CCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeee---cccCCC
Q 008496          372 ATSSTDNMIYVCKIGENRP-IKTFA-----GHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDL---REHSKE  442 (563)
Q Consensus       372 ~~~~~d~~i~~~~~~~~~~-~~~~~-----~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~---~~~~~~  442 (563)
                      ++.-++...+.|+.++... -.++.     .....+++++.++-|++.+.|+..|+|.+|++.++.....+   ..|.++
T Consensus       416 ~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~  495 (910)
T KOG1539|consen  416 TAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGE  495 (910)
T ss_pred             EEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCc
Confidence            2223334455555544322 11111     12256889999999999999999999999999999888887   589999


Q ss_pred             EEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEE-------------------------------------
Q 008496          443 IYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLY-------------------------------------  485 (563)
Q Consensus       443 i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~-------------------------------------  485 (563)
                      |+.++....+.         .+++++.+|.+++||......+.                                     
T Consensus       496 V~gla~D~~n~---------~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~  566 (910)
T KOG1539|consen  496 VTGLAVDGTNR---------LLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTR  566 (910)
T ss_pred             eeEEEecCCCc---------eEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhh
Confidence            99999765443         68889999999999876543221                                     


Q ss_pred             ----EecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEecCCCEEEEEEcCCCCEEEEEECC-CeEEEE
Q 008496          486 ----SLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFAN-HTVCVL  559 (563)
Q Consensus       486 ----~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~~~~i~~l~w~~~g~~la~~~~~-~~v~v~  559 (563)
                          .+.+|...|++++|||||+||++++.|++|++||+.++.++..+.-...+..++++|.|++||+...| ..|.+|
T Consensus       567 kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~LAT~Hvd~~gIylW  645 (910)
T KOG1539|consen  567 KVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDFLATVHVDQNGIYLW  645 (910)
T ss_pred             hhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecCCcceeeEECCCCCEEEEEEecCceEEEE
Confidence                23379999999999999999999999999999999999999998888889999999999999999887 456666

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.97  E-value=8.8e-28  Score=264.21  Aligned_cols=256  Identities=19%  Similarity=0.316  Sum_probs=211.3

Q ss_pred             CCeEEEEEcCCce-e-----EeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCc--------eeEEeeecccCe
Q 008496          295 DGQARIWSTNGDL-K-----CTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEE--------WKQQFEFHSGPT  360 (563)
Q Consensus       295 dg~i~vw~~~~~~-~-----~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~--------~~~~~~~~~~~~  360 (563)
                      +|.+++|+..... .     ..+..|.+.|.+++|+|+|++|++|+.|++|+|||+....        ....+ .+...+
T Consensus       457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~-~~~~~v  535 (793)
T PLN00181        457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVEL-ASRSKL  535 (793)
T ss_pred             hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEe-cccCce
Confidence            6777888765321 1     1244589999999999999999999999999999975421        01111 123456


Q ss_pred             EEEecCC--CceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECC-CCCEEEEEeCCCcEEEEeCCCCceeeeec
Q 008496          361 LDVDWRN--NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDP-TGSLLASCSDDVTAKIWNMKQDKYVHDLR  437 (563)
Q Consensus       361 ~~~~~~~--~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~-~~~~las~s~dg~i~iwd~~~~~~~~~~~  437 (563)
                      .++.|..  ...+++++.|++|++|++.+.+.+..+.+|.+.|.+++|+| ++.+|+||+.|++|++||++++..+..+.
T Consensus       536 ~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~  615 (793)
T PLN00181        536 SGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIK  615 (793)
T ss_pred             eeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEe
Confidence            7788864  46789999999999999999888999999999999999997 78999999999999999999988888776


Q ss_pred             ccCCCEEEEEEccC-CCCCCCCCCcEEEEEEeCCCeEEEEeCCCCe-EEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcE
Q 008496          438 EHSKEIYTIRWSPT-GSGTNNPNQQLILASASFDSTVKLWDVELGK-LLYSLNGHREPVYSLAFSPTGEYLASGSLDKSM  515 (563)
Q Consensus       438 ~~~~~i~~~~~~p~-~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~-~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v  515 (563)
                      .+ ..+.++.|.+. +.         +|++|+.||.|++||+++++ .+..+.+|..+|.++.|. ++.+|++|+.|++|
T Consensus       616 ~~-~~v~~v~~~~~~g~---------~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~i  684 (793)
T PLN00181        616 TK-ANICCVQFPSESGR---------SLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTL  684 (793)
T ss_pred             cC-CCeEEEEEeCCCCC---------EEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEE
Confidence            54 57899999653 32         78999999999999998765 467788999999999997 78899999999999


Q ss_pred             EEEecCCC------eeEEEEecCC-CEEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496          516 HIWSLKEG------KIVKTYTGNG-GIFEVCWNKEGDKIAACFANHTVCVLDFR  562 (563)
Q Consensus       516 ~iw~~~~~------~~~~~~~~~~-~i~~l~w~~~g~~la~~~~~~~v~v~~~~  562 (563)
                      +|||+..+      +.+.++.++. .+..++|+++|.+||+|+.|+.|.||+..
T Consensus       685 kiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~  738 (793)
T PLN00181        685 KLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKA  738 (793)
T ss_pred             EEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECC
Confidence            99999743      5677776644 57889999999999999999999999853

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.97  E-value=6.4e-28  Score=214.49  Aligned_cols=267  Identities=22%  Similarity=0.367  Sum_probs=208.5

Q ss_pred             CCCceEEEEECCC-CCEEEEeeCCCcEEEEecCCC-CCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEE
Q 008496          214 HTSEVCACAWSPA-GSLLASGSGDSTARIWTIADG-TSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLAT  291 (563)
Q Consensus       214 h~~~V~~~~~sp~-~~~latgs~D~~i~iW~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~s  291 (563)
                      -.+.|.+++|||. ..+|+.||-|++||+|+++.. ...+.                ....+.++|.+++|+.||..+++
T Consensus        26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~k----------------a~~~~~~PvL~v~WsddgskVf~   89 (347)
T KOG0647|consen   26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPK----------------AQQSHDGPVLDVCWSDDGSKVFS   89 (347)
T ss_pred             cccchheeEeccccCceEEecccCCceEEEEEecCCcccch----------------hhhccCCCeEEEEEccCCceEEe
Confidence            3477999999995 667779999999999999863 22111                11235688999999999999999


Q ss_pred             EeCCCeEEEEEcCCceeEeeccCCCCEEEEEeCCCCC--EEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecCCCc
Q 008496          292 GSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGD--YLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNV  369 (563)
Q Consensus       292 g~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~--~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  369 (563)
                      |+.|+.+++||+.......+..|.++|.+++|-+...  .|+|||+|++|+.||.+....+.++.... .+++++.... 
T Consensus        90 g~~Dk~~k~wDL~S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPe-RvYa~Dv~~p-  167 (347)
T KOG0647|consen   90 GGCDKQAKLWDLASGQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPE-RVYAADVLYP-  167 (347)
T ss_pred             eccCCceEEEEccCCCeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccc-eeeehhccCc-
Confidence            9999999999998888888999999999999988766  79999999999999999877666555422 2333333322 


Q ss_pred             eEEEEeCCCeEEEEEcCCCcceeeecCCCc----ceeEEEECCCCCEEEEEeCCCcEEEEeCCCCce--eeeecccCC--
Q 008496          370 SFATSSTDNMIYVCKIGENRPIKTFAGHQG----EVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKY--VHDLREHSK--  441 (563)
Q Consensus       370 ~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~----~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~--~~~~~~~~~--  441 (563)
                      .++.+..+..|.++.+.+..  ..++.+.+    .++||+..++....|.|+-.|.+-|..++...+  -..|+-|..  
T Consensus       168 m~vVata~r~i~vynL~n~~--te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~  245 (347)
T KOG0647|consen  168 MAVVATAERHIAVYNLENPP--TEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTN  245 (347)
T ss_pred             eeEEEecCCcEEEEEcCCCc--chhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCC
Confidence            35566778889999996543  22233332    478999999998889999999999998877532  234444432  


Q ss_pred             -------CEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEE
Q 008496          442 -------EIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASG  509 (563)
Q Consensus       442 -------~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasg  509 (563)
                             .|.+|+|+|...         .|++++.||+..+||-.....+.+...|..||++.+|+.+|.++|-+
T Consensus       246 ~~~~~VYaVNsi~FhP~hg---------tlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA  311 (347)
T KOG0647|consen  246 SVNDDVYAVNSIAFHPVHG---------TLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYA  311 (347)
T ss_pred             CCCCceEEecceEeecccc---------eEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEE
Confidence                   355678988542         68999999999999998888888888899999999999999998854

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.97  E-value=1.3e-29  Score=230.24  Aligned_cols=275  Identities=23%  Similarity=0.361  Sum_probs=223.2

Q ss_pred             ccCCCCeEEEEECCCC-CEEEEEeCCCeEEEEEcCC-ceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCc
Q 008496          271 NEKSKDVTTLDWNGEG-TLLATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEE  348 (563)
Q Consensus       271 ~~~~~~V~~l~~s~~g-~~l~sg~~dg~i~vw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~  348 (563)
                      .+|...|.|++=+|.- ..+++|+.||.|+|||+.. .+..++..|.+.|.+|++..  ..+++++.|++|+.|-+... 
T Consensus        63 ~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~~-  139 (433)
T KOG0268|consen   63 DGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDGP-  139 (433)
T ss_pred             cccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeeccCC-
Confidence            4456779999999876 7899999999999999865 45668999999999999987  67999999999999986553 


Q ss_pred             eeEEeeecccCeEEEecC-CCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCC-EEEEEeCCCcEEEEe
Q 008496          349 WKQQFEFHSGPTLDVDWR-NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGS-LLASCSDDVTAKIWN  426 (563)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~-~las~s~dg~i~iwd  426 (563)
                      ...++.+ ...+++++-. .+..|++|+.  .|-+||..-..|+..+.-....|.++.|+|... +|++|..|+.|.+||
T Consensus       140 p~~tilg-~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD  216 (433)
T KOG0268|consen  140 PLHTILG-KSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYD  216 (433)
T ss_pred             cceeeec-cccccccccccccccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEe
Confidence            3333332 2233444432 3456787775  477899999999999988888899999999764 678888999999999


Q ss_pred             CCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC-eEEEEecCCCCCEEEEEEcCCCCE
Q 008496          427 MKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG-KLLYSLNGHREPVYSLAFSPTGEY  505 (563)
Q Consensus       427 ~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~h~~~i~~l~~spdg~~  505 (563)
                      +++..+++.+.. .-.-..|+|+|.+.         .+++|+.|.+++.+|++.- ..+....+|...|.++.|||.|+-
T Consensus       217 ~R~~~Pl~KVi~-~mRTN~IswnPeaf---------nF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~E  286 (433)
T KOG0268|consen  217 LRQASPLKKVIL-TMRTNTICWNPEAF---------NFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQE  286 (433)
T ss_pred             cccCCccceeee-eccccceecCcccc---------ceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcch
Confidence            999988766542 23346799999542         5789999999999999864 457778899999999999999999


Q ss_pred             EEEEeCCCcEEEEecCCCeeEEEEec--CCCEEEEEEcCCCCEEEEEECCCeEEEEEe
Q 008496          506 LASGSLDKSMHIWSLKEGKIVKTYTG--NGGIFEVCWNKEGDKIAACFANHTVCVLDF  561 (563)
Q Consensus       506 lasgs~dg~v~iw~~~~~~~~~~~~~--~~~i~~l~w~~~g~~la~~~~~~~v~v~~~  561 (563)
                      +++||.|.+|+||.+..+.--..|-.  ...|+++.||.|.+++.+|+.++.|++|..
T Consensus       287 fvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka  344 (433)
T KOG0268|consen  287 FVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKA  344 (433)
T ss_pred             hccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeec
Confidence            99999999999999988764444322  346899999999999999999999999964

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=6.7e-28  Score=236.57  Aligned_cols=276  Identities=26%  Similarity=0.489  Sum_probs=230.0

Q ss_pred             EEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEEeCCCeE
Q 008496          219 CACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQA  298 (563)
Q Consensus       219 ~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~dg~i  298 (563)
                      +-+.|+ ..+.||.|. ...+.+|+-.++..           ..+..+      ....|+++.|+++|.+|++|..+|.|
T Consensus       181 nlldWs-s~n~laVal-g~~vylW~~~s~~v-----------~~l~~~------~~~~vtSv~ws~~G~~LavG~~~g~v  241 (484)
T KOG0305|consen  181 NLLDWS-SANVLAVAL-GQSVYLWSASSGSV-----------TELCSF------GEELVTSVKWSPDGSHLAVGTSDGTV  241 (484)
T ss_pred             hHhhcc-cCCeEEEEe-cceEEEEecCCCce-----------EEeEec------CCCceEEEEECCCCCEEEEeecCCeE
Confidence            347898 556667664 46799999765431           111111      14679999999999999999999999


Q ss_pred             EEEEcCC-ceeEeecc-CCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEE-eeecccCeEEEecCC-CceEEEE
Q 008496          299 RIWSTNG-DLKCTLSK-HKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQ-FEFHSGPTLDVDWRN-NVSFATS  374 (563)
Q Consensus       299 ~vw~~~~-~~~~~~~~-h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~  374 (563)
                      .|||... +....+.+ |..-|-+++|+  +..+.+|+.|+.|..+|++..+.... +..|...+..+.|.. ...+|++
T Consensus       242 ~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASG  319 (484)
T KOG0305|consen  242 QIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASG  319 (484)
T ss_pred             EEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccC
Confidence            9999753 34455666 99999999998  66899999999999999987765444 778888999999975 5678999


Q ss_pred             eCCCeEEEEEcCCCcceeeecCCCcceeEEEECCC-CCEEEEEe--CCCcEEEEeCCCCceeeeecccCCCEEEEEEccC
Q 008496          375 STDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT-GSLLASCS--DDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPT  451 (563)
Q Consensus       375 ~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~-~~~las~s--~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~  451 (563)
                      +.|+.+++|+.....|...+..|.+.|.+++|+|- ..+||+|+  .|++|++||..++..+..+. -...|.++.|++.
T Consensus       320 gnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vd-tgsQVcsL~Wsk~  398 (484)
T KOG0305|consen  320 GNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVD-TGSQVCSLIWSKK  398 (484)
T ss_pred             CCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccc-cCCceeeEEEcCC
Confidence            99999999999888999999999999999999994 67888865  59999999999999887765 3467999999997


Q ss_pred             CCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 008496          452 GSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEG  523 (563)
Q Consensus       452 ~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~  523 (563)
                      ..       +++...|..++.|.||+..+.+.+..+.+|...|..+++||||..+++|+.|.++++|++-+.
T Consensus       399 ~k-------Ei~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~  463 (484)
T KOG0305|consen  399 YK-------ELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE  463 (484)
T ss_pred             CC-------EEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence            64       345555777889999999999999999999999999999999999999999999999998663

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=1.4e-28  Score=219.63  Aligned_cols=285  Identities=24%  Similarity=0.420  Sum_probs=226.4

Q ss_pred             eEecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCE
Q 008496          209 TILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTL  288 (563)
Q Consensus       209 ~~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~  288 (563)
                      ..|.||.+.|..++-.....++.|++.|.+++||.+.++.+..                 .+.+|.+.|.++.|++.+.+
T Consensus       142 re~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~-----------------~Y~GH~GSVNsikfh~s~~L  204 (481)
T KOG0300|consen  142 RELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLA-----------------TYTGHTGSVNSIKFHNSGLL  204 (481)
T ss_pred             hhhcccccceeeehhhcCCcceeecccccceeEEeecccccee-----------------eecccccceeeEEeccccce
Confidence            4678999999999988777899999999999999998876421                 12345688999999999999


Q ss_pred             EEEEeCCCeEEEEEc------CC-----------------------------------ceeEeeccCCCCEEEEEeCCCC
Q 008496          289 LATGSYDGQARIWST------NG-----------------------------------DLKCTLSKHKGPIFSLKWNKKG  327 (563)
Q Consensus       289 l~sg~~dg~i~vw~~------~~-----------------------------------~~~~~~~~h~~~V~~l~~~~~~  327 (563)
                      +++++.|++..||..      ..                                   ...+.+.+|.+.|.+..|...|
T Consensus       205 ~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg  284 (481)
T KOG0300|consen  205 LLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGG  284 (481)
T ss_pred             EEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCc
Confidence            999999999999951      00                                   0234566777888888888788


Q ss_pred             CEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEEC
Q 008496          328 DYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWD  407 (563)
Q Consensus       328 ~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~  407 (563)
                      +.++++++|.+..+||+++++.                                         +..+.||..+.+-++-+
T Consensus       285 ~Q~vTaSWDRTAnlwDVEtge~-----------------------------------------v~~LtGHd~ELtHcstH  323 (481)
T KOG0300|consen  285 QQMVTASWDRTANLWDVETGEV-----------------------------------------VNILTGHDSELTHCSTH  323 (481)
T ss_pred             ceeeeeeccccceeeeeccCce-----------------------------------------eccccCcchhccccccC
Confidence            8888888888888888777653                                         45567888899889999


Q ss_pred             CCCCEEEEEeCCCcEEEEeCCCCc-eeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCe-EEE
Q 008496          408 PTGSLLASCSDDVTAKIWNMKQDK-YVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK-LLY  485 (563)
Q Consensus       408 ~~~~~las~s~dg~i~iwd~~~~~-~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~-~~~  485 (563)
                      |..+++++.|.|.+.|+||++..- .+..|++|...|+++.|.-+.          -+++||.|.+|++||+++.+ .+.
T Consensus       324 ptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd----------~vVSgSDDrTvKvWdLrNMRsplA  393 (481)
T KOG0300|consen  324 PTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD----------RVVSGSDDRTVKVWDLRNMRSPLA  393 (481)
T ss_pred             CcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCC----------ceeecCCCceEEEeeeccccCcce
Confidence            999999999999999999998543 367789999999999998765          37899999999999999765 455


Q ss_pred             EecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEE----ecCC-CEEEEEEcCCC--CEEEEEECCCeEEE
Q 008496          486 SLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTY----TGNG-GIFEVCWNKEG--DKIAACFANHTVCV  558 (563)
Q Consensus       486 ~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~----~~~~-~i~~l~w~~~g--~~la~~~~~~~v~v  558 (563)
                      ++. ...+++.++.+..+..||.--.+..|++||+...++.+..    .++. -|++.+|..+-  .-|.+|+-|..+.=
T Consensus       394 TIR-tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~g  472 (481)
T KOG0300|consen  394 TIR-TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAG  472 (481)
T ss_pred             eee-cCCccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeeccccCcccccccccccceeee
Confidence            555 4678999999999999999888899999999765443221    1222 37889997653  45666667778877


Q ss_pred             EEee
Q 008496          559 LDFR  562 (563)
Q Consensus       559 ~~~~  562 (563)
                      |++.
T Consensus       473 W~in  476 (481)
T KOG0300|consen  473 WKIN  476 (481)
T ss_pred             eEec
Confidence            7763

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.96  E-value=7.8e-28  Score=235.79  Aligned_cols=279  Identities=22%  Similarity=0.384  Sum_probs=225.6

Q ss_pred             eEecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEE-EEEC-CCC
Q 008496          209 TILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTT-LDWN-GEG  286 (563)
Q Consensus       209 ~~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~-l~~s-~~g  286 (563)
                      ..+.||...|.+|++.+. ..++++|.||++++|+-......+.        ..+.       .+.+-|.+ +++- .++
T Consensus         8 ~~l~gH~~DVr~v~~~~~-~~i~s~sRd~t~~vw~~~~~~~l~~--------~~~~-------~~~g~i~~~i~y~e~~~   71 (745)
T KOG0301|consen    8 HELEGHKSDVRAVAVTDG-VCIISGSRDGTVKVWAKKGKQYLET--------HAFE-------GPKGFIANSICYAESDK   71 (745)
T ss_pred             EEeccCccchheeEecCC-eEEeecCCCCceeeeeccCcccccc--------eecc-------cCcceeeccceeccccC
Confidence            578999999999987654 4788999999999998543222110        0000       11122322 5555 355


Q ss_pred             CEEEEEeCCCeEEEEEcCC-ceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEec
Q 008496          287 TLLATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDW  365 (563)
Q Consensus       287 ~~l~sg~~dg~i~vw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~  365 (563)
                      -.+++|+.|+.+.+|...+ ....++.+|+..|.++.-..++. ++|||+|.++++|-  .+++...+..|..++..+..
T Consensus        72 ~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~--~~~l~~~l~gH~asVWAv~~  148 (745)
T KOG0301|consen   72 GRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWR--IGELVYSLQGHTASVWAVAS  148 (745)
T ss_pred             cceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEec--chhhhcccCCcchheeeeee
Confidence            6799999999999999765 56778999999999999777776 99999999999994  45666678999999998888


Q ss_pred             CCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEE
Q 008496          366 RNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYT  445 (563)
Q Consensus       366 ~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~  445 (563)
                      .+...|++++.|.+|++|.-  ++.+++|.||+.-|+.+++-+++. |+||+.||.|++|++ ++.++..+.+|+.-+++
T Consensus       149 l~e~~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~-flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYs  224 (745)
T KOG0301|consen  149 LPENTYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSH-FLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYS  224 (745)
T ss_pred             cCCCcEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCCC-eEeecCCceEEEEec-cCceeeeeeccceEEEE
Confidence            77779999999999999986  567889999999999999987655 579999999999999 77788899999999999


Q ss_pred             EEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCC
Q 008496          446 IRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKE  522 (563)
Q Consensus       446 ~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~  522 (563)
                      +...+++.         .++|++.|++++||+..  .+...+.-....|+++.+-++|. |++|+.||.|+||....
T Consensus       225 is~~~~~~---------~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~k  289 (745)
T KOG0301|consen  225 ISMALSDG---------LIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVDK  289 (745)
T ss_pred             EEecCCCC---------eEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCC-EEEeccCceEEEEEecc
Confidence            99555443         78999999999999876  77777775555899999988887 56788899999998763

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=3e-27  Score=211.45  Aligned_cols=291  Identities=23%  Similarity=0.349  Sum_probs=212.4

Q ss_pred             CCCceeEecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEEC
Q 008496          204 PNSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWN  283 (563)
Q Consensus       204 ~~~~~~~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s  283 (563)
                      .+-.+.+|+||.+.|++++|+.||+.|||++.|++||||++.+-....             |...+.+.....-|.+.|+
T Consensus        75 Hpl~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~e-------------Hr~~R~nve~dhpT~V~Fa  141 (420)
T KOG2096|consen   75 HPLNVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKE-------------HRCIRQNVEYDHPTRVVFA  141 (420)
T ss_pred             cchhhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhh-------------hhHhhccccCCCceEEEEC
Confidence            334456899999999999999999999999999999999987532110             1111112223457899999


Q ss_pred             CCCCEEEEEeCC-CeEEEEEcC----CceeE---------eeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCce
Q 008496          284 GEGTLLATGSYD-GQARIWSTN----GDLKC---------TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEW  349 (563)
Q Consensus       284 ~~g~~l~sg~~d-g~i~vw~~~----~~~~~---------~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~  349 (563)
                      ||.+-++..... ..+++|...    |....         .-..|.-+|..+-...++.+|++++.|..|.+|+++ |+.
T Consensus       142 pDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~  220 (420)
T KOG2096|consen  142 PDCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQL  220 (420)
T ss_pred             CCcceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cce
Confidence            998877766554 478999743    32211         123467788888888889999999999999999998 777


Q ss_pred             eEEeeecccCeEEEecCCCceE-EEEeCCCeEEEEEcC--------CCcceeeecCCCcceeEEEECCCCCEEEEEeCCC
Q 008496          350 KQQFEFHSGPTLDVDWRNNVSF-ATSSTDNMIYVCKIG--------ENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDV  420 (563)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~~i~~~~~~--------~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg  420 (563)
                      ++.+.............++.+| ++++----|++|.+-        +-+.+..+.||...|..++|++++..++|.|.||
T Consensus       221 L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG  300 (420)
T KOG2096|consen  221 LQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDG  300 (420)
T ss_pred             eeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCC
Confidence            7777665555555555555555 455555567788652        1234567899999999999999999999999999


Q ss_pred             cEEEEeCCCC-------ceeeee----cccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEe-c
Q 008496          421 TAKIWNMKQD-------KYVHDL----REHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSL-N  488 (563)
Q Consensus       421 ~i~iwd~~~~-------~~~~~~----~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~  488 (563)
                      ++||||.+-.       +.+.+.    .+..+.-..+..+|.|.         .| ..+....++++..++|+..-++ .
T Consensus       301 ~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~---------~l-A~s~gs~l~~~~se~g~~~~~~e~  370 (420)
T KOG2096|consen  301 KWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGD---------SL-AVSFGSDLKVFASEDGKDYPELED  370 (420)
T ss_pred             cEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCc---------EE-EeecCCceEEEEcccCccchhHHH
Confidence            9999997532       111111    11223334788888875         34 3455678999999998876665 4


Q ss_pred             CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 008496          489 GHREPVYSLAFSPTGEYLASGSLDKSMHIWS  519 (563)
Q Consensus       489 ~h~~~i~~l~~spdg~~lasgs~dg~v~iw~  519 (563)
                      .|...|.+|+|+|+|+++||++ |..++++.
T Consensus       371 ~h~~~Is~is~~~~g~~~atcG-dr~vrv~~  400 (420)
T KOG2096|consen  371 IHSTTISSISYSSDGKYIATCG-DRYVRVIR  400 (420)
T ss_pred             hhcCceeeEEecCCCcEEeeec-ceeeeeec
Confidence            5889999999999999999988 66777765

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.96  E-value=1e-28  Score=213.77  Aligned_cols=277  Identities=24%  Similarity=0.407  Sum_probs=236.7

Q ss_pred             ccCCCCeEEEEECC---CCCEEEEEeCCCeEEEEEc-CCceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCC
Q 008496          271 NEKSKDVTTLDWNG---EGTLLATGSYDGQARIWST-NGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKT  346 (563)
Q Consensus       271 ~~~~~~V~~l~~s~---~g~~l~sg~~dg~i~vw~~-~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~  346 (563)
                      .+|+.+|..++|||   +|-+|++++.||.-.+-+- .|..+.+|.+|++.|++...+.+....++++.|=+.++||.-+
T Consensus        11 ~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~t   90 (334)
T KOG0278|consen   11 HGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVT   90 (334)
T ss_pred             cCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhh
Confidence            35678899999985   8999999999998777664 3678889999999999999999999999999999999999999


Q ss_pred             CceeEEeeecccCeEEEecC-CCceEEEEeCCCeEEEEEcCCC-cceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEE
Q 008496          347 EEWKQQFEFHSGPTLDVDWR-NNVSFATSSTDNMIYVCKIGEN-RPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKI  424 (563)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~i~~~~~~~~-~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~i  424 (563)
                      +..+..|+. .--+..+.|. +...+++++.+..++++++... .|...+.+|.+.|..+-|....+.|++.++|++||+
T Consensus        91 gdelhsf~h-khivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRL  169 (334)
T KOG0278|consen   91 GDELHSFEH-KHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRL  169 (334)
T ss_pred             hhhhhhhhh-hheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEE
Confidence            887766643 3345556665 4467789999999999998654 477889999999999999988899999999999999


Q ss_pred             EeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCC
Q 008496          425 WNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGE  504 (563)
Q Consensus       425 wd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~  504 (563)
                      ||.+++..++++.. ..+++++..+++|.          +++-..-+.|++||..+-.++...+. .-.|.+.+++|+..
T Consensus       170 WD~rTgt~v~sL~~-~s~VtSlEvs~dG~----------ilTia~gssV~Fwdaksf~~lKs~k~-P~nV~SASL~P~k~  237 (334)
T KOG0278|consen  170 WDHRTGTEVQSLEF-NSPVTSLEVSQDGR----------ILTIAYGSSVKFWDAKSFGLLKSYKM-PCNVESASLHPKKE  237 (334)
T ss_pred             EEeccCcEEEEEec-CCCCcceeeccCCC----------EEEEecCceeEEeccccccceeeccC-ccccccccccCCCc
Confidence            99999999988763 45789999999885          44556678999999998887776653 34689999999999


Q ss_pred             EEEEEeCCCcEEEEecCCCeeEEEE-ec-CCCEEEEEEcCCCCEEEEEECCCeEEEEE
Q 008496          505 YLASGSLDKSMHIWSLKEGKIVKTY-TG-NGGIFEVCWNKEGDKIAACFANHTVCVLD  560 (563)
Q Consensus       505 ~lasgs~dg~v~iw~~~~~~~~~~~-~~-~~~i~~l~w~~~g~~la~~~~~~~v~v~~  560 (563)
                      ++++|+.|..++.||..+|.-+..+ .+ .++|.++.|+|||...|+|+.||+|++|-
T Consensus       238 ~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQ  295 (334)
T KOG0278|consen  238 FFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQ  295 (334)
T ss_pred             eEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEE
Confidence            9999999999999999999888776 33 57899999999999999999999999994

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.96  E-value=5.1e-29  Score=226.48  Aligned_cols=285  Identities=20%  Similarity=0.364  Sum_probs=228.4

Q ss_pred             eeEecCCCCceEEEEECCCC-CEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCC
Q 008496          208 VTILEGHTSEVCACAWSPAG-SLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG  286 (563)
Q Consensus       208 ~~~l~~h~~~V~~~~~sp~~-~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g  286 (563)
                      +.-|.||.++|.|++=+|.. ..+|||+.||.|+|||+..-.+.             ..+    ..|.+.|..+++..  
T Consensus        59 v~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~-------------~~f----~AH~G~V~Gi~v~~--  119 (433)
T KOG0268|consen   59 VGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECI-------------RTF----KAHEGLVRGICVTQ--  119 (433)
T ss_pred             hhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhh-------------hee----ecccCceeeEEecc--
Confidence            44579999999999999986 89999999999999998753321             111    23456788888876  


Q ss_pred             CEEEEEeCCCeEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecC
Q 008496          287 TLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR  366 (563)
Q Consensus       287 ~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~  366 (563)
                      ..+++++.|.+|+.|..++....++.+ .+.+.++.-+..+..++||+.  .|-|||.+....++++......+.++.+.
T Consensus       120 ~~~~tvgdDKtvK~wk~~~~p~~tilg-~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfN  196 (433)
T KOG0268|consen  120 TSFFTVGDDKTVKQWKIDGPPLHTILG-KSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFN  196 (433)
T ss_pred             cceEEecCCcceeeeeccCCcceeeec-cccccccccccccccccccCc--eeeecccccCCccceeecCCCceeEEecC
Confidence            678999999999999999876666643 356777877777788888875  68999998888888888777777777765


Q ss_pred             C--CceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCC-ceeeeecccCCCE
Q 008496          367 N--NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD-KYVHDLREHSKEI  443 (563)
Q Consensus       367 ~--~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~-~~~~~~~~~~~~i  443 (563)
                      +  ...+++|+.|+.|.+||+++..|++... -.-.-+.|+|+|.+--+++|++|..+..||++.- .++...++|...|
T Consensus       197 pvETsILas~~sDrsIvLyD~R~~~Pl~KVi-~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV  275 (433)
T KOG0268|consen  197 PVETSILASCASDRSIVLYDLRQASPLKKVI-LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAV  275 (433)
T ss_pred             CCcchheeeeccCCceEEEecccCCccceee-eeccccceecCccccceeeccccccceehhhhhhcccchhhcccceeE
Confidence            4  3567788899999999999999876553 2335678999998878899999999999999754 4567778999999


Q ss_pred             EEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEe-cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCC
Q 008496          444 YTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSL-NGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKE  522 (563)
Q Consensus       444 ~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~  522 (563)
                      .++.|+|.|.         -+++||.|.+||||.+..+...-.. +.--..|.++.||-|.+|+++||.|+.|++|....
T Consensus       276 ~dVdfsptG~---------EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~A  346 (433)
T KOG0268|consen  276 MDVDFSPTGQ---------EFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKA  346 (433)
T ss_pred             EEeccCCCcc---------hhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecch
Confidence            9999999997         4899999999999999866432211 01123599999999999999999999999998764


Q ss_pred             Ce
Q 008496          523 GK  524 (563)
Q Consensus       523 ~~  524 (563)
                      .+
T Consensus       347 se  348 (433)
T KOG0268|consen  347 SE  348 (433)
T ss_pred             hh
Confidence            43

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.96  E-value=2.2e-27  Score=220.59  Aligned_cols=282  Identities=22%  Similarity=0.326  Sum_probs=230.0

Q ss_pred             CCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEEeC
Q 008496          215 TSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSY  294 (563)
Q Consensus       215 ~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~  294 (563)
                      ...+.++...|....++|||.|..+.++|...+...             ..+    .++...|+.+.++++...+++++.
T Consensus       219 ~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l-------------~~~----~Gh~kki~~v~~~~~~~~v~~aSa  281 (506)
T KOG0289|consen  219 TPGITALDIIPSSSKILTGGEDKTAVLFDKPSNQIL-------------ATL----KGHTKKITSVKFHKDLDTVITASA  281 (506)
T ss_pred             CCCeeEEeecCCCCcceecCCCCceEEEecchhhhh-------------hhc----cCcceEEEEEEeccchhheeecCC
Confidence            356788888888789999999999999997654321             122    245678999999999999999999


Q ss_pred             CCeEEEEEcCC-ceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecCCCceEEE
Q 008496          295 DGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFAT  373 (563)
Q Consensus       295 dg~i~vw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (563)
                      |..|+||.... ........|..+|+.+..+|.|.||++++.|+++.+.|++++........                  
T Consensus       282 d~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~------------------  343 (506)
T KOG0289|consen  282 DEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSD------------------  343 (506)
T ss_pred             cceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEee------------------
Confidence            99999999653 44556788999999999999999999999999999999988764332110                  


Q ss_pred             EeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEEEEEccCCC
Q 008496          374 SSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGS  453 (563)
Q Consensus       374 ~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~  453 (563)
                                           .+..-.+++++|+|||-+|++|+.|+.++|||+++...+..|.+|.++|.+++|+.+| 
T Consensus       344 ---------------------~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENG-  401 (506)
T KOG0289|consen  344 ---------------------ETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENG-  401 (506)
T ss_pred             ---------------------ccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCc-
Confidence                                 0112257899999999999999999999999999999999999999999999999988 


Q ss_pred             CCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecC-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEecC--CCeeEEEEe
Q 008496          454 GTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNG-HREPVYSLAFSPTGEYLASGSLDKSMHIWSLK--EGKIVKTYT  530 (563)
Q Consensus       454 ~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~--~~~~~~~~~  530 (563)
                              ++|+++..|+.|++||++..+...++.- ...+|.++.|.+.|++|+.++.|=+|++++-.  .+..+..+.
T Consensus       402 --------Y~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~  473 (506)
T KOG0289|consen  402 --------YWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELA  473 (506)
T ss_pred             --------eEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhh
Confidence                    4899999999999999998776666543 23479999999999999999888666666632  455666665


Q ss_pred             cCC-CEEEEEEcCCCCEEEEEECCCeEEEEEe
Q 008496          531 GNG-GIFEVCWNKEGDKIAACFANHTVCVLDF  561 (563)
Q Consensus       531 ~~~-~i~~l~w~~~g~~la~~~~~~~v~v~~~  561 (563)
                      .+. ..+.+.|.....+|+.|+.+..+.|+-+
T Consensus       474 ~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~  505 (506)
T KOG0289|consen  474 DHSGLSTGVRFGEHAQYLASTSMDAILRLYAL  505 (506)
T ss_pred             hcccccceeeecccceEEeeccchhheEEeec
Confidence            554 4567889889999999999988777654

>PTZ00420 coronin; Provisional

Probab=99.96  E-value=5.7e-27  Score=239.72  Aligned_cols=227  Identities=18%  Similarity=0.346  Sum_probs=181.8

Q ss_pred             EeCCCeEEEEEcCC-ceeEeeccCCCCEEEEEeCCC-CCEEEEeeCCCcEEEEECCCCce-eEEeeecccCeEEEecCCC
Q 008496          292 GSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKK-GDYLLTGSCDKTAIVWDVKTEEW-KQQFEFHSGPTLDVDWRNN  368 (563)
Q Consensus       292 g~~dg~i~vw~~~~-~~~~~~~~h~~~V~~l~~~~~-~~~l~s~s~D~~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~  368 (563)
                      |+.++.+++|+... .....+.+|.++|.+++|+|+ +++|++|+.|++|+|||+.++.. ...                
T Consensus        50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~----------------  113 (568)
T PTZ00420         50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKE----------------  113 (568)
T ss_pred             CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccc----------------
Confidence            66788999998653 345678899999999999997 78999999999999999975421 000                


Q ss_pred             ceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCE-EEEEeCCCcEEEEeCCCCceeeeecccCCCEEEEE
Q 008496          369 VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSL-LASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIR  447 (563)
Q Consensus       369 ~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~-las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~  447 (563)
                                        ...++..+.+|...|.+++|+|++.. |++++.|++|+|||++++..+..+. |...|.+++
T Consensus       114 ------------------i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~Sls  174 (568)
T PTZ00420        114 ------------------IKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLK  174 (568)
T ss_pred             ------------------cccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEE
Confidence                              01234457789999999999999875 5799999999999999988776665 567899999


Q ss_pred             EccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEE-----EEEcCCCCEEEEEeCCC----cEEEE
Q 008496          448 WSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYS-----LAFSPTGEYLASGSLDK----SMHIW  518 (563)
Q Consensus       448 ~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~-----l~~spdg~~lasgs~dg----~v~iw  518 (563)
                      |+|+|.         +|++++.|+.|+|||+++++.+.++.+|.+.+.+     ..|++++.+|++++.|+    +|+||
T Consensus       175 wspdG~---------lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLW  245 (568)
T PTZ00420        175 WNIKGN---------LLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLW  245 (568)
T ss_pred             ECCCCC---------EEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEE
Confidence            999886         7888999999999999999999999999876543     34578999999988774    79999


Q ss_pred             ecCC-CeeEEEEecCC--CEEEEEEcC-CCCEEEEEECCCeEEEEEee
Q 008496          519 SLKE-GKIVKTYTGNG--GIFEVCWNK-EGDKIAACFANHTVCVLDFR  562 (563)
Q Consensus       519 ~~~~-~~~~~~~~~~~--~i~~l~w~~-~g~~la~~~~~~~v~v~~~~  562 (563)
                      |+++ ++.+.......  ++.-..|++ +|..+++|..|++|++|+++
T Consensus       246 Dlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~  293 (568)
T PTZ00420        246 DLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHS  293 (568)
T ss_pred             ECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEcc
Confidence            9985 55666554332  333335555 48899999999999999985

>PTZ00420 coronin; Provisional

Probab=99.96  E-value=1e-26  Score=237.75  Aligned_cols=245  Identities=20%  Similarity=0.325  Sum_probs=183.2

Q ss_pred             EeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCC-CCEEEEEeCCCeEEEEEcCCc----
Q 008496          232 SGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE-GTLLATGSYDGQARIWSTNGD----  306 (563)
Q Consensus       232 tgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~-g~~l~sg~~dg~i~vw~~~~~----  306 (563)
                      .||.++.+++|+.....             .+..+    ..|...|++++|+|+ +.+|++|+.||.|+||+....    
T Consensus        49 gGG~~gvI~L~~~~r~~-------------~v~~L----~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~  111 (568)
T PTZ00420         49 GGGLIGAIRLENQMRKP-------------PVIKL----KGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESV  111 (568)
T ss_pred             CCCceeEEEeeecCCCc-------------eEEEE----cCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccc
Confidence            36678899999864311             11122    235678999999996 799999999999999997521    


Q ss_pred             -----eeEeeccCCCCEEEEEeCCCCCEE-EEeeCCCcEEEEECCCCceeEEeeecccCeEEEecCCCceEEEEeCCCeE
Q 008496          307 -----LKCTLSKHKGPIFSLKWNKKGDYL-LTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMI  380 (563)
Q Consensus       307 -----~~~~~~~h~~~V~~l~~~~~~~~l-~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i  380 (563)
                           ....+.+|...|.+++|+|++..+ ++++.|++|++||++++.....                            
T Consensus       112 ~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~----------------------------  163 (568)
T PTZ00420        112 KEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQ----------------------------  163 (568)
T ss_pred             cccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEE----------------------------
Confidence                 234678899999999999998765 6899999999999987643211                            


Q ss_pred             EEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEEEEE-----ccCCCCC
Q 008496          381 YVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRW-----SPTGSGT  455 (563)
Q Consensus       381 ~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~-----~p~~~~~  455 (563)
                                   +. |...|.+++|+|+|.+|++++.|+.|+|||++++..+..+.+|.+.+.+..+     ++++.  
T Consensus       164 -------------i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~--  227 (568)
T PTZ00420        164 -------------IN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDN--  227 (568)
T ss_pred             -------------Ee-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCC--
Confidence                         11 3346889999999999999999999999999999999999999877654432     34432  


Q ss_pred             CCCCCcEEEEEEeCCC----eEEEEeCCC-CeEEEEec--CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCee--E
Q 008496          456 NNPNQQLILASASFDS----TVKLWDVEL-GKLLYSLN--GHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKI--V  526 (563)
Q Consensus       456 ~~~~~~~~l~s~s~dg----~i~iwd~~~-~~~~~~~~--~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~--~  526 (563)
                             +|++++.|+    .|+|||+++ ++++..+.  .+.+.+.....+++|.++++|+.|+.|++|++..+.+  +
T Consensus       228 -------~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~~~l  300 (568)
T PTZ00420        228 -------YILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGSIRKV  300 (568)
T ss_pred             -------EEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCcEEee
Confidence                   567766664    799999995 55555443  3334444455566799999999999999999987753  3


Q ss_pred             EEEecCCCEEEEEEcCCC
Q 008496          527 KTYTGNGGIFEVCWNKEG  544 (563)
Q Consensus       527 ~~~~~~~~i~~l~w~~~g  544 (563)
                      ..+....+...++|.|+-
T Consensus       301 ~~~~s~~p~~g~~f~Pkr  318 (568)
T PTZ00420        301 NEYKSCSPFRSFGFLPKQ  318 (568)
T ss_pred             cccccCCCccceEEcccc
Confidence            334444556788888863

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.96  E-value=1.2e-27  Score=246.44  Aligned_cols=282  Identities=26%  Similarity=0.394  Sum_probs=212.4

Q ss_pred             ceeEecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCC--CCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECC
Q 008496          207 DVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADG--TSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG  284 (563)
Q Consensus       207 ~~~~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~  284 (563)
                      .+..+..|.+.|+|+.|+|||++||+||.|+.|.||.....  ....+.+.+..++...+. ......|..+|..++|+|
T Consensus        61 ~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~-~~~l~~H~~DV~Dv~Wsp  139 (942)
T KOG0973|consen   61 HLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKV-VSILRGHDSDVLDVNWSP  139 (942)
T ss_pred             hheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeE-EEEEecCCCccceeccCC
Confidence            45567889999999999999999999999999999998741  111111122222221111 112234678999999999


Q ss_pred             CCCEEEEEeCCCeEEEEEcC-CceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEE
Q 008496          285 EGTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDV  363 (563)
Q Consensus       285 ~g~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~  363 (563)
                      ++.+|++++.|+.|.||+.. .....++.+|.+.|-++.|.|-|+||++-+.|++|++|+.......+.+..+-      
T Consensus       140 ~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf------  213 (942)
T KOG0973|consen  140 DDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPF------  213 (942)
T ss_pred             CccEEEEecccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccch------
Confidence            99999999999999999964 46677899999999999999999999999999999999865433333221110      


Q ss_pred             ecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeC----CCcEEEEeCCCCceeeeeccc
Q 008496          364 DWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD----DVTAKIWNMKQDKYVHDLREH  439 (563)
Q Consensus       364 ~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~----dg~i~iwd~~~~~~~~~~~~~  439 (563)
                                                  .. ..-...+.-+.|+|||++|++...    -.++.|.+-.+.+.-..|.+|
T Consensus       214 ----------------------------~~-~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH  264 (942)
T KOG0973|consen  214 ----------------------------EE-SPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGH  264 (942)
T ss_pred             ----------------------------hh-CCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecC
Confidence                                        00 001224667999999999998643    336788877777777889999


Q ss_pred             CCCEEEEEEccCCCCCC-------CCC-CcEEEEEEeCCCeEEEEeCCCCeEEEEecC-CCCCEEEEEEcCCCCEEEEEe
Q 008496          440 SKEIYTIRWSPTGSGTN-------NPN-QQLILASASFDSTVKLWDVELGKLLYSLNG-HREPVYSLAFSPTGEYLASGS  510 (563)
Q Consensus       440 ~~~i~~~~~~p~~~~~~-------~~~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-h~~~i~~l~~spdg~~lasgs  510 (563)
                      .+++.+++|+|.--...       .++ ..+++|+||.|++|.||.....+++..... ...+|..++|||||..|..+|
T Consensus       265 ~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS  344 (942)
T KOG0973|consen  265 SAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACS  344 (942)
T ss_pred             CCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEe
Confidence            99999999998421111       121 224899999999999999987787765432 345799999999999999999


Q ss_pred             CCCcEEEEecCCCe
Q 008496          511 LDKSMHIWSLKEGK  524 (563)
Q Consensus       511 ~dg~v~iw~~~~~~  524 (563)
                      .||+|.+..+....
T Consensus       345 ~DGtV~~i~Fee~E  358 (942)
T KOG0973|consen  345 LDGTVALIHFEEKE  358 (942)
T ss_pred             cCCeEEEEEcchHH
Confidence            99999999987644

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.96  E-value=2.1e-26  Score=205.76  Aligned_cols=266  Identities=21%  Similarity=0.356  Sum_probs=210.3

Q ss_pred             CCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEEeC
Q 008496          215 TSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSY  294 (563)
Q Consensus       215 ~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~  294 (563)
                      ...|..+.|+|.+..|+.++.||++++|++......          ..        -.+..++++++|.++ ..+++|+.
T Consensus        13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~----------~~--------~~~~~plL~c~F~d~-~~~~~G~~   73 (323)
T KOG1036|consen   13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLK----------LK--------FKHGAPLLDCAFADE-STIVTGGL   73 (323)
T ss_pred             hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhh----------hh--------eecCCceeeeeccCC-ceEEEecc
Confidence            467899999999988888899999999998753210          01        123578999999874 67899999


Q ss_pred             CCeEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecCCCceEEEE
Q 008496          295 DGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATS  374 (563)
Q Consensus       295 dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  374 (563)
                      ||.|+++|.+......+..|..+|.++.+++....+++||+|++|++||.+.......+.                    
T Consensus        74 dg~vr~~Dln~~~~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d--------------------  133 (323)
T KOG1036|consen   74 DGQVRRYDLNTGNEDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFD--------------------  133 (323)
T ss_pred             CceEEEEEecCCcceeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccc--------------------
Confidence            999999999998888899999999999999988999999999999999998632211110                    


Q ss_pred             eCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeec--ccCCCEEEEEEccCC
Q 008496          375 STDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLR--EHSKEIYTIRWSPTG  452 (563)
Q Consensus       375 ~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~--~~~~~i~~~~~~p~~  452 (563)
                                            ....|.|+..  .+..|+.|+.|..+.+||+++.......+  ...-.+.+++.-|++
T Consensus       134 ----------------------~~kkVy~~~v--~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~  189 (323)
T KOG1036|consen  134 ----------------------QGKKVYCMDV--SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNG  189 (323)
T ss_pred             ----------------------cCceEEEEec--cCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCC
Confidence                                  1124555554  46778899999999999998765443222  123357888888865


Q ss_pred             CCCCCCCCcEEEEEEeCCCeEEEEeCCCC----eEEEEecCCCC---------CEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 008496          453 SGTNNPNQQLILASASFDSTVKLWDVELG----KLLYSLNGHRE---------PVYSLAFSPTGEYLASGSLDKSMHIWS  519 (563)
Q Consensus       453 ~~~~~~~~~~~l~s~s~dg~i~iwd~~~~----~~~~~~~~h~~---------~i~~l~~spdg~~lasgs~dg~v~iw~  519 (563)
                      .+         .+.+|-||.|.+=.++..    +..+.++.|..         ||++|+|+|--..||||+.||.|.+||
T Consensus       190 eG---------y~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd  260 (323)
T KOG1036|consen  190 EG---------YVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWD  260 (323)
T ss_pred             Cc---------eEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEcc
Confidence            42         578899999888666554    45567777753         799999999999999999999999999


Q ss_pred             cCCCeeEEEEecC-CCEEEEEEcCCCCEEEEEEC
Q 008496          520 LKEGKIVKTYTGN-GGIFEVCWNKEGDKIAACFA  552 (563)
Q Consensus       520 ~~~~~~~~~~~~~-~~i~~l~w~~~g~~la~~~~  552 (563)
                      +.+.+.++.+... ..|..++|+.+|..||++++
T Consensus       261 ~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s  294 (323)
T KOG1036|consen  261 LFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS  294 (323)
T ss_pred             CcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence            9999888887664 56999999999999999864

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=2e-26  Score=217.61  Aligned_cols=275  Identities=23%  Similarity=0.342  Sum_probs=222.4

Q ss_pred             CceEEEEECCCCC-EEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEEeC
Q 008496          216 SEVCACAWSPAGS-LLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSY  294 (563)
Q Consensus       216 ~~V~~~~~sp~~~-~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~  294 (563)
                      +.|.+++|||... -+|+.++ -.+.||+..+...             .+.+    ..-.+.|.+++|-.||++|+.|..
T Consensus        27 ~~vssl~fsp~~P~d~aVt~S-~rvqly~~~~~~~-------------~k~~----srFk~~v~s~~fR~DG~LlaaGD~   88 (487)
T KOG0310|consen   27 NSVSSLCFSPKHPYDFAVTSS-VRVQLYSSVTRSV-------------RKTF----SRFKDVVYSVDFRSDGRLLAAGDE   88 (487)
T ss_pred             CcceeEecCCCCCCceEEecc-cEEEEEecchhhh-------------hhhH----HhhccceeEEEeecCCeEEEccCC
Confidence            5799999999753 3444332 3577777543211             0100    111356999999999999999999


Q ss_pred             CCeEEEEEcCCc-eeEeeccCCCCEEEEEeCCCCC-EEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecCC--Cce
Q 008496          295 DGQARIWSTNGD-LKCTLSKHKGPIFSLKWNKKGD-YLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN--NVS  370 (563)
Q Consensus       295 dg~i~vw~~~~~-~~~~~~~h~~~V~~l~~~~~~~-~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~--~~~  370 (563)
                      .|.|+|+|...+ ....+..|+.||..+.|+|.++ .|++|+.|+.+++||+.+...+..+..|...+.+.+|.+  +..
T Consensus        89 sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hi  168 (487)
T KOG0310|consen   89 SGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHI  168 (487)
T ss_pred             cCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeE
Confidence            999999995542 4557889999999999999765 567888889999999999887557888999999998865  456


Q ss_pred             EEEEeCCCeEEEEEcCCC-cceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCce-eeeecccCCCEEEEEE
Q 008496          371 FATSSTDNMIYVCKIGEN-RPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKY-VHDLREHSKEIYTIRW  448 (563)
Q Consensus       371 ~~~~~~d~~i~~~~~~~~-~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~-~~~~~~~~~~i~~~~~  448 (563)
                      +++++-||.|++||++.. .++..+ .|..+|..+.+-|.|.+||+++.. .++|||+.++.. +..+..|.+.|+|+++
T Consensus       169 vvtGsYDg~vrl~DtR~~~~~v~el-nhg~pVe~vl~lpsgs~iasAgGn-~vkVWDl~~G~qll~~~~~H~KtVTcL~l  246 (487)
T KOG0310|consen  169 VVTGSYDGKVRLWDTRSLTSRVVEL-NHGCPVESVLALPSGSLIASAGGN-SVKVWDLTTGGQLLTSMFNHNKTVTCLRL  246 (487)
T ss_pred             EEecCCCceEEEEEeccCCceeEEe-cCCCceeeEEEcCCCCEEEEcCCC-eEEEEEecCCceehhhhhcccceEEEEEe
Confidence            899999999999999877 555555 488899999999999999999865 799999986554 4445559999999999


Q ss_pred             ccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEec
Q 008496          449 SPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSL  520 (563)
Q Consensus       449 ~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~  520 (563)
                      ..++.         .|+|||-|+.|++||+.+-+.++.+. -.+||.+++.|||++.++.|-.+|.+.+=+.
T Consensus       247 ~s~~~---------rLlS~sLD~~VKVfd~t~~Kvv~s~~-~~~pvLsiavs~dd~t~viGmsnGlv~~rr~  308 (487)
T KOG0310|consen  247 ASDST---------RLLSGSLDRHVKVFDTTNYKVVHSWK-YPGPVLSIAVSPDDQTVVIGMSNGLVSIRRR  308 (487)
T ss_pred             ecCCc---------eEeecccccceEEEEccceEEEEeee-cccceeeEEecCCCceEEEecccceeeeehh
Confidence            87664         68999999999999999889998887 5789999999999999999999998877643

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.96  E-value=1.4e-26  Score=227.08  Aligned_cols=272  Identities=22%  Similarity=0.353  Sum_probs=231.4

Q ss_pred             ccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCcee---EeeccCCCCEEE-EEeCC-CCCEEEEeeCCCcEEEEECC
Q 008496          271 NEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLK---CTLSKHKGPIFS-LKWNK-KGDYLLTGSCDKTAIVWDVK  345 (563)
Q Consensus       271 ~~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~~---~~~~~h~~~V~~-l~~~~-~~~~l~s~s~D~~v~iwd~~  345 (563)
                      .+|..+|..++..+. ..++++|.||++++|+..++..   ..+.+|.+-|.. +++-+ ++-.+++|+.|.++.+|.+.
T Consensus        11 ~gH~~DVr~v~~~~~-~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~   89 (745)
T KOG0301|consen   11 EGHKSDVRAVAVTDG-VCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLS   89 (745)
T ss_pred             ccCccchheeEecCC-eEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEecC
Confidence            346678888886654 4789999999999999765432   346778887766 78776 33459999999999999999


Q ss_pred             CCceeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEE
Q 008496          346 TEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIW  425 (563)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iw  425 (563)
                      .......+..|...+.++.-..+..++++|-|.++++|..++  ....+.||+..|.+++.-|.+ .++|||.|.+||+|
T Consensus        90 ~~~P~~~LkgH~snVC~ls~~~~~~~iSgSWD~TakvW~~~~--l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklW  166 (745)
T KOG0301|consen   90 QAEPLYTLKGHKSNVCSLSIGEDGTLISGSWDSTAKVWRIGE--LVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLW  166 (745)
T ss_pred             CCCchhhhhccccceeeeecCCcCceEecccccceEEecchh--hhcccCCcchheeeeeecCCC-cEEeccCcceeeec
Confidence            999999999999999999877777799999999999998865  345589999999999999988 67899999999999


Q ss_pred             eCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCE
Q 008496          426 NMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEY  505 (563)
Q Consensus       426 d~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~  505 (563)
                      .-  ++.+.+|.+|...|..++.-|++.          ++|++.||.|++|++ +|.++.++.+|..-|++++..+++..
T Consensus       167 k~--~~~l~tf~gHtD~VRgL~vl~~~~----------flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~  233 (745)
T KOG0301|consen  167 KG--GTLLKTFSGHTDCVRGLAVLDDSH----------FLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGL  233 (745)
T ss_pred             cC--CchhhhhccchhheeeeEEecCCC----------eEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCe
Confidence            75  677889999999999999988753          789999999999999 79999999999999999999899999


Q ss_pred             EEEEeCCCcEEEEecCCCeeEEEEecCC-CEEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496          506 LASGSLDKSMHIWSLKEGKIVKTYTGNG-GIFEVCWNKEGDKIAACFANHTVCVLDFR  562 (563)
Q Consensus       506 lasgs~dg~v~iw~~~~~~~~~~~~~~~-~i~~l~w~~~g~~la~~~~~~~v~v~~~~  562 (563)
                      +++++.|++++||+..  .+++.+...+ .|++++.=+.|+. ++|++||.|+||-.+
T Consensus       234 Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgDI-vvg~SDG~VrVfT~~  288 (745)
T KOG0301|consen  234 IVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGDI-VVGGSDGRVRVFTVD  288 (745)
T ss_pred             EEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCCE-EEeccCceEEEEEec
Confidence            9999999999999976  7777776654 6888887777866 555589999999654

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=2.8e-26  Score=205.25  Aligned_cols=259  Identities=21%  Similarity=0.346  Sum_probs=203.7

Q ss_pred             eeEecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCC
Q 008496          208 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT  287 (563)
Q Consensus       208 ~~~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~  287 (563)
                      ...+..|.++|+++|.  ++.++||||.|-+|+|||+......+                 ..-.|.+.|+++.|.+.-.
T Consensus        36 lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg-----------------~ll~HagsitaL~F~~~~S   96 (362)
T KOG0294|consen   36 LFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLG-----------------ILLSHAGSITALKFYPPLS   96 (362)
T ss_pred             cccccccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhc-----------------ceeccccceEEEEecCCcc
Confidence            3456789999999998  58999999999999999987543211                 1112467899999999765


Q ss_pred             --EEEEEeCCCeEEEEEcCC-ceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEe
Q 008496          288 --LLATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVD  364 (563)
Q Consensus       288 --~l~sg~~dg~i~vw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~  364 (563)
                        .|++|+.||.|.+|+... .+..++..|++.|+.++.+|.|+.-++.+.|+.++.||+-+++...             
T Consensus        97 ~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~-------------  163 (362)
T KOG0294|consen   97 KSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAF-------------  163 (362)
T ss_pred             hhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccce-------------
Confidence              899999999999999865 5667899999999999999999999999999999999997764221             


Q ss_pred             cCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEE
Q 008496          365 WRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIY  444 (563)
Q Consensus       365 ~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~  444 (563)
                                       ++.+++            ..+.+.|+|.|.+++.++.+ .|-||.+.+......+.. ...+.
T Consensus       164 -----------------v~~L~~------------~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~~-~~r~l  212 (362)
T KOG0294|consen  164 -----------------VLNLKN------------KATLVSWSPQGDHFVVSGRN-KIDIYQLDNASVFREIEN-PKRIL  212 (362)
T ss_pred             -----------------eeccCC------------cceeeEEcCCCCEEEEEecc-EEEEEecccHhHhhhhhc-cccce
Confidence                             122211            12238999999988888776 588998876655443332 24566


Q ss_pred             EEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEE--cCCCCEEEEEeCCCcEEEEecCC
Q 008496          445 TIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAF--SPTGEYLASGSLDKSMHIWSLKE  522 (563)
Q Consensus       445 ~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~--spdg~~lasgs~dg~v~iw~~~~  522 (563)
                      ++.|...+          .|++|..|+.|++||...+.+...+.+|...|-++.+  .|++.||+|+|.||.|+|||++.
T Consensus       213 ~~~~l~~~----------~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~  282 (362)
T KOG0294|consen  213 CATFLDGS----------ELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDM  282 (362)
T ss_pred             eeeecCCc----------eEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEccc
Confidence            77665433          6899999999999999999999999999999999984  68899999999999999999986


Q ss_pred             C-----eeEEEEecCCCEEEEE
Q 008496          523 G-----KIVKTYTGNGGIFEVC  539 (563)
Q Consensus       523 ~-----~~~~~~~~~~~i~~l~  539 (563)
                      .     +++..+..+..++++.
T Consensus       283 ~~k~~~~~l~e~n~~~RltCl~  304 (362)
T KOG0294|consen  283 ETKKRPTLLAELNTNVRLTCLR  304 (362)
T ss_pred             cccCCcceeEEeecCCccceee
Confidence            5     4555555555555543

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.95  E-value=1.4e-26  Score=215.28  Aligned_cols=235  Identities=25%  Similarity=0.382  Sum_probs=203.4

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCeEEEEEcC-CceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEe
Q 008496          275 KDVTTLDWNGEGTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQF  353 (563)
Q Consensus       275 ~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~  353 (563)
                      ..++++...|....+++|+.|..+.++|.. ++...++.+|...|+.+.|+|+...+++++.|..|+||.......    
T Consensus       220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~----  295 (506)
T KOG0289|consen  220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSE----  295 (506)
T ss_pred             CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccC----
Confidence            458888888887899999999999999975 567778999999999999999999999999999999998654321    


Q ss_pred             eecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCcee
Q 008496          354 EFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYV  433 (563)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~  433 (563)
                                                           ......|..+|+.+..+|.|.+|+++|+|++.-+.|++++..+
T Consensus       296 -------------------------------------~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~l  338 (506)
T KOG0289|consen  296 -------------------------------------PTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQL  338 (506)
T ss_pred             -------------------------------------ccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEE
Confidence                                                 1234568899999999999999999999999999999999877


Q ss_pred             eeecc--cCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeC
Q 008496          434 HDLRE--HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSL  511 (563)
Q Consensus       434 ~~~~~--~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~  511 (563)
                      .....  ..-.+++.+|+|+|         +++.+|..||.|+|||+..+..+..+.+|.++|.+|+|+.+|.|||++..
T Consensus       339 t~vs~~~s~v~~ts~~fHpDg---------Lifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~ad  409 (506)
T KOG0289|consen  339 TVVSDETSDVEYTSAAFHPDG---------LIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAAD  409 (506)
T ss_pred             EEEeeccccceeEEeeEcCCc---------eEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEec
Confidence            55443  22358999999998         48999999999999999999999999999999999999999999999999


Q ss_pred             CCcEEEEecCCCeeEEEEecC--CCEEEEEEcCCCCEEEEEECCCeEEEEEe
Q 008496          512 DKSMHIWSLKEGKIVKTYTGN--GGIFEVCWNKEGDKIAACFANHTVCVLDF  561 (563)
Q Consensus       512 dg~v~iw~~~~~~~~~~~~~~--~~i~~l~w~~~g~~la~~~~~~~v~v~~~  561 (563)
                      |+.|++||++.-+..+++.-.  .++.+++|+..|++|++++.+  +.||-+
T Consensus       410 d~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~--l~Vy~~  459 (506)
T KOG0289|consen  410 DGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSD--LQVYIC  459 (506)
T ss_pred             CCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecce--eEEEEE
Confidence            999999999988888887653  359999999999999999655  555543

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=2.7e-27  Score=230.35  Aligned_cols=287  Identities=21%  Similarity=0.378  Sum_probs=223.7

Q ss_pred             EEEECC-CCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEEeCCCeE
Q 008496          220 ACAWSP-AGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQA  298 (563)
Q Consensus       220 ~~~~sp-~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~dg~i  298 (563)
                      ++..++ .+++|+|||.||.|++|++.......      ...     .......|+..|..+....+|+.|++++.|-+|
T Consensus        29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~------s~~-----~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTV   97 (735)
T KOG0308|consen   29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEP------STP-----YIASMEHHSDWVNDIILCGNGKTLISASSDTTV   97 (735)
T ss_pred             hccccCCCCceEEecCCCceEEEeccccccCCc------ccc-----hhhhhhhhHhHHhhHHhhcCCCceEEecCCceE
Confidence            455555 46789999999999999975422100      000     011223456778888888899999999999999


Q ss_pred             EEEEcCCc---eeEeeccCCCCEEEEEe-CCCCCEEEEeeCCCcEEEEECCCCce--eEEeeecccCeEEEecCCCceEE
Q 008496          299 RIWSTNGD---LKCTLSKHKGPIFSLKW-NKKGDYLLTGSCDKTAIVWDVKTEEW--KQQFEFHSGPTLDVDWRNNVSFA  372 (563)
Q Consensus       299 ~vw~~~~~---~~~~~~~h~~~V~~l~~-~~~~~~l~s~s~D~~v~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  372 (563)
                      ++|+....   ...++..|+..|.+|+. -++...++||+-|+.|++||++++..  ...+.                  
T Consensus        98 K~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n------------------  159 (735)
T KOG0308|consen   98 KVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFN------------------  159 (735)
T ss_pred             EEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhcc------------------
Confidence            99997644   34578889999999999 78888999999999999999998732  11111                  


Q ss_pred             EEeCCCeEEEEEcCCCcceeeec-CCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEEEEEccC
Q 008496          373 TSSTDNMIYVCKIGENRPIKTFA-GHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPT  451 (563)
Q Consensus       373 ~~~~d~~i~~~~~~~~~~~~~~~-~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~  451 (563)
                            .+.+         ..+. |+...|.+++.++.|..|++|+..+.+++||.++.+.+..+++|...|..+..+++
T Consensus       160 ------~~t~---------~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dD  224 (735)
T KOG0308|consen  160 ------NVTV---------NSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDD  224 (735)
T ss_pred             ------cccc---------ccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCC
Confidence                  1111         1122 78888999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCC-CeeEEEEe
Q 008496          452 GSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKE-GKIVKTYT  530 (563)
Q Consensus       452 ~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~-~~~~~~~~  530 (563)
                      |.         .++|+|.||+|++||+...+|++++..|...|+++.-+|+=..+.+|+.||.|..=|+++ .+....++
T Consensus       225 Gt---------~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick  295 (735)
T KOG0308|consen  225 GT---------RLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICK  295 (735)
T ss_pred             CC---------eEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeec
Confidence            86         688999999999999999999999999999999999999999999999999999999988 44555555


Q ss_pred             cCCCEEEEEEcCCCCEEEEEECCCeEEEE
Q 008496          531 GNGGIFEVCWNKEGDKIAACFANHTVCVL  559 (563)
Q Consensus       531 ~~~~i~~l~w~~~g~~la~~~~~~~v~v~  559 (563)
                      ....|..+..+...+-+-++..|+.|.=|
T Consensus       296 ~daPv~~l~~~~~~~~~WvtTtds~I~rW  324 (735)
T KOG0308|consen  296 EDAPVLKLHLHEHDNSVWVTTTDSSIKRW  324 (735)
T ss_pred             CCCchhhhhhccccCCceeeeccccceec
Confidence            55555554444433333444445544444

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.95  E-value=8e-27  Score=207.95  Aligned_cols=211  Identities=27%  Similarity=0.512  Sum_probs=178.8

Q ss_pred             CCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCC-------------------ceeEeeccCCCCEEEEEeCCCCCEEEEe
Q 008496          273 KSKDVTTLDWNGEGTLLATGSYDGQARIWSTNG-------------------DLKCTLSKHKGPIFSLKWNKKGDYLLTG  333 (563)
Q Consensus       273 ~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~-------------------~~~~~~~~h~~~V~~l~~~~~~~~l~s~  333 (563)
                      |..++.+.+||+||.++++|+.|..|+|.|++.                   .++.++-.|..+|..+.|+|....|++|
T Consensus       111 HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~  190 (430)
T KOG0640|consen  111 HKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISG  190 (430)
T ss_pred             cccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEec
Confidence            456789999999999999999999999999641                   2345677899999999999999999999


Q ss_pred             eCCCcEEEEECCCCceeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEE
Q 008496          334 SCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLL  413 (563)
Q Consensus       334 s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l  413 (563)
                      +.|++|+++|.......+.+                                      +.|. ....|.++.|+|.|.+|
T Consensus       191 srD~tvKlFDfsK~saKrA~--------------------------------------K~~q-d~~~vrsiSfHPsGefl  231 (430)
T KOG0640|consen  191 SRDNTVKLFDFSKTSAKRAF--------------------------------------KVFQ-DTEPVRSISFHPSGEFL  231 (430)
T ss_pred             cCCCeEEEEecccHHHHHHH--------------------------------------HHhh-ccceeeeEeecCCCceE
Confidence            99999999997643322211                                      1111 23468899999999999


Q ss_pred             EEEeCCCcEEEEeCCCCceeeee---cccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEec-C
Q 008496          414 ASCSDDVTAKIWNMKQDKYVHDL---REHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLN-G  489 (563)
Q Consensus       414 as~s~dg~i~iwd~~~~~~~~~~---~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~  489 (563)
                      +.|.+-.++|+||+++-++...-   ..|.+.|+++.+++.+.         +.++||.||.|+|||--+++|+.++. .
T Consensus       232 lvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~---------lYvTaSkDG~IklwDGVS~rCv~t~~~A  302 (430)
T KOG0640|consen  232 LVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGS---------LYVTASKDGAIKLWDGVSNRCVRTIGNA  302 (430)
T ss_pred             EEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCcc---------EEEEeccCCcEEeeccccHHHHHHHHhh
Confidence            99999999999999988765432   36889999999999886         77899999999999998899988874 4


Q ss_pred             CC-CCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEec
Q 008496          490 HR-EPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTG  531 (563)
Q Consensus       490 h~-~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~  531 (563)
                      |. ..|.++.|+.+|+||.+.|.|..|++|.+.+|++++.|.+
T Consensus       303 H~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtG  345 (430)
T KOG0640|consen  303 HGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTG  345 (430)
T ss_pred             cCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEec
Confidence            54 4699999999999999999999999999999999999865

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=2e-25  Score=200.58  Aligned_cols=242  Identities=20%  Similarity=0.298  Sum_probs=198.8

Q ss_pred             eeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecCC-CceEEEEe--CCCeEEEEEcC
Q 008496          310 TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN-NVSFATSS--TDNMIYVCKIG  386 (563)
Q Consensus       310 ~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~d~~i~~~~~~  386 (563)
                      .+....+.|.++.|+++|.++++++.|.+++|||..+++.++++..+.-.+-.+.+.. ...++.++  .|.+|+..++.
T Consensus         9 ~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~   88 (311)
T KOG1446|consen    9 VFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLH   88 (311)
T ss_pred             ccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEee
Confidence            4445678899999999999999999999999999999999988877765555555543 23333344  38899999999


Q ss_pred             CCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEE
Q 008496          387 ENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILAS  466 (563)
Q Consensus       387 ~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s  466 (563)
                      .++-++.|.||...|++++.+|-+..++|+|.|++||+||++..++..-+.....  ..++|.|.|         +++|+
T Consensus        89 dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~--pi~AfDp~G---------LifA~  157 (311)
T KOG1446|consen   89 DNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR--PIAAFDPEG---------LIFAL  157 (311)
T ss_pred             cCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCC--cceeECCCC---------cEEEE
Confidence            9999999999999999999999999999999999999999998887766544333  346788887         37788


Q ss_pred             EeCCCeEEEEeCCCC--eE--EEEec-CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEecCCC----EEE
Q 008496          467 ASFDSTVKLWDVELG--KL--LYSLN-GHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGG----IFE  537 (563)
Q Consensus       467 ~s~dg~i~iwd~~~~--~~--~~~~~-~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~~~~----i~~  537 (563)
                      +.....|+|||++.-  .+  ...+. +.....+.|.|||||++|..++..+.+++.|.-+|.++.++.....    ..+
T Consensus       158 ~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~  237 (311)
T KOG1446|consen  158 ANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLS  237 (311)
T ss_pred             ecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCccee
Confidence            877779999999853  12  22333 3456689999999999999999999999999999999988875322    247


Q ss_pred             EEEcCCCCEEEEEECCCeEEEEEee
Q 008496          538 VCWNKEGDKIAACFANHTVCVLDFR  562 (563)
Q Consensus       538 l~w~~~g~~la~~~~~~~v~v~~~~  562 (563)
                      .+|.|||+.+..|+.||++.||+++
T Consensus       238 a~ftPds~Fvl~gs~dg~i~vw~~~  262 (311)
T KOG1446|consen  238 ATFTPDSKFVLSGSDDGTIHVWNLE  262 (311)
T ss_pred             EEECCCCcEEEEecCCCcEEEEEcC
Confidence            8999999999999999999999974

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.95  E-value=3.3e-26  Score=214.75  Aligned_cols=257  Identities=25%  Similarity=0.515  Sum_probs=201.7

Q ss_pred             ecCCCCceEEEEECCCC-CEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCC-CCE
Q 008496          211 LEGHTSEVCACAWSPAG-SLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE-GTL  288 (563)
Q Consensus       211 l~~h~~~V~~~~~sp~~-~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~-g~~  288 (563)
                      .-.|.++|+.+..-|+. .++||++..+.+.|||.................+.   +.++    .+.=+.|+|++. .-.
T Consensus       120 ~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~---L~gH----~~eg~glsWn~~~~g~  192 (422)
T KOG0264|consen  120 KINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLR---LKGH----EKEGYGLSWNRQQEGT  192 (422)
T ss_pred             eccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceE---EEee----ccccccccccccccee
Confidence            34699999999999975 68888999999999998764332221111000111   1222    233566999984 457


Q ss_pred             EEEEeCCCeEEEEEcCCc--------eeEeeccCCCCEEEEEeCCCC-CEEEEeeCCCcEEEEECCCCceeEEeeecccC
Q 008496          289 LATGSYDGQARIWSTNGD--------LKCTLSKHKGPIFSLKWNKKG-DYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGP  359 (563)
Q Consensus       289 l~sg~~dg~i~vw~~~~~--------~~~~~~~h~~~V~~l~~~~~~-~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~  359 (563)
                      |++|+.|+.|++||.+..        .+..+.+|...|..++|++.. ..|.+++.|+.+.|||++++.           
T Consensus       193 Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~-----------  261 (422)
T KOG0264|consen  193 LLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNT-----------  261 (422)
T ss_pred             EeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCC-----------
Confidence            889999999999997632        345688999999999999966 457789999999999998631           


Q ss_pred             eEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCC-CCEEEEEeCCCcEEEEeCCCCc-eeeeec
Q 008496          360 TLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT-GSLLASCSDDVTAKIWNMKQDK-YVHDLR  437 (563)
Q Consensus       360 ~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~-~~~las~s~dg~i~iwd~~~~~-~~~~~~  437 (563)
                                                  .++.....+|.++|+|++|+|- +.+|||||.|++|.+||+++-+ +++++.
T Consensus       262 ----------------------------~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e  313 (422)
T KOG0264|consen  262 ----------------------------SKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFE  313 (422)
T ss_pred             ----------------------------CCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceecc
Confidence                                        2233455689999999999995 5678999999999999998754 578999


Q ss_pred             ccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC--------------CeEEEEecCCCCCEEEEEEcCCC
Q 008496          438 EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL--------------GKLLYSLNGHREPVYSLAFSPTG  503 (563)
Q Consensus       438 ~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~--------------~~~~~~~~~h~~~i~~l~~spdg  503 (563)
                      +|...|.++.|+|...        .+|||++.|+.+.+||+..              .++++.-.||...|..++|+|+.
T Consensus       314 ~H~dev~~V~WSPh~e--------tvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~e  385 (422)
T KOG0264|consen  314 GHEDEVFQVEWSPHNE--------TVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNE  385 (422)
T ss_pred             CCCcceEEEEeCCCCC--------ceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCC
Confidence            9999999999999764        4899999999999999853              13467778999999999999998


Q ss_pred             CE-EEEEeCCCcEEEEecC
Q 008496          504 EY-LASGSLDKSMHIWSLK  521 (563)
Q Consensus       504 ~~-lasgs~dg~v~iw~~~  521 (563)
                      .+ |++.+.|+.+.||.+.
T Consensus       386 PW~I~SvaeDN~LqIW~~s  404 (422)
T KOG0264|consen  386 PWTIASVAEDNILQIWQMA  404 (422)
T ss_pred             CeEEEEecCCceEEEeecc
Confidence            76 5789999999999975

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.95  E-value=4.8e-27  Score=210.45  Aligned_cols=238  Identities=22%  Similarity=0.428  Sum_probs=202.7

Q ss_pred             CCCeEEEEECCCCCEEEEEeCCCeEEEEEc-CCceeE--------eeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEEC
Q 008496          274 SKDVTTLDWNGEGTLLATGSYDGQARIWST-NGDLKC--------TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDV  344 (563)
Q Consensus       274 ~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~-~~~~~~--------~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~  344 (563)
                      .+.+-|..|||||++|++|+.||.|.+|+. .|++..        .+--|..+|.|+.|+.+...|++|+.||.|++|.+
T Consensus       213 KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri  292 (508)
T KOG0275|consen  213 KSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRI  292 (508)
T ss_pred             ccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEE
Confidence            456889999999999999999999999995 454432        23347889999999999999999999999999999


Q ss_pred             CCCceeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEE
Q 008496          345 KTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKI  424 (563)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~i  424 (563)
                      ++|.+++.|.                                        ++|...|+|+.|+.|+..+.++|.|.++||
T Consensus       293 ~tG~ClRrFd----------------------------------------rAHtkGvt~l~FSrD~SqiLS~sfD~tvRi  332 (508)
T KOG0275|consen  293 ETGQCLRRFD----------------------------------------RAHTKGVTCLSFSRDNSQILSASFDQTVRI  332 (508)
T ss_pred             ecchHHHHhh----------------------------------------hhhccCeeEEEEccCcchhhcccccceEEE
Confidence            9887665442                                        268889999999999999999999999999


Q ss_pred             EeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecC--CCCCEEEEEEcCC
Q 008496          425 WNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNG--HREPVYSLAFSPT  502 (563)
Q Consensus       425 wd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~--h~~~i~~l~~spd  502 (563)
                      --+++++++..|++|+.-|+...|.++|.         .++++|.||+|++|+..+..|+.+++.  ...+|+++-.-|-
T Consensus       333 HGlKSGK~LKEfrGHsSyvn~a~ft~dG~---------~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PK  403 (508)
T KOG0275|consen  333 HGLKSGKCLKEFRGHSSYVNEATFTDDGH---------HIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPK  403 (508)
T ss_pred             eccccchhHHHhcCccccccceEEcCCCC---------eEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCC
Confidence            99999999999999999999999999986         688999999999999999999887753  4567888877765


Q ss_pred             -CCEEEEEeCCCcEEEEecCCCeeEEEEec----CCCEEEEEEcCCCCEEEEEECCCeEEEEEe
Q 008496          503 -GEYLASGSLDKSMHIWSLKEGKIVKTYTG----NGGIFEVCWNKEGDKIAACFANHTVCVLDF  561 (563)
Q Consensus       503 -g~~lasgs~dg~v~iw~~~~~~~~~~~~~----~~~i~~l~w~~~g~~la~~~~~~~v~v~~~  561 (563)
                       -..++.+...++|.|-++. |.+++++..    .+.....+.+|.|.++.+...|+.+.-+++
T Consensus       404 npeh~iVCNrsntv~imn~q-GQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~  466 (508)
T KOG0275|consen  404 NPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSV  466 (508)
T ss_pred             CCceEEEEcCCCeEEEEecc-ceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEe
Confidence             4678889999999999974 788998864    344567789999999888888887655543

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=1.1e-26  Score=200.58  Aligned_cols=253  Identities=25%  Similarity=0.407  Sum_probs=194.9

Q ss_pred             ecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECC--CCCE
Q 008496          211 LEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG--EGTL  288 (563)
Q Consensus       211 l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~--~g~~  288 (563)
                      -.+|.+.|..+...--|++|||++.|++|||+.+.+...        .  ..+..    ..+|.++|.-++|-.  -|.+
T Consensus         7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~--------s--~ll~~----L~Gh~GPVwqv~wahPk~G~i   72 (299)
T KOG1332|consen    7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQ--------S--KLLAE----LTGHSGPVWKVAWAHPKFGTI   72 (299)
T ss_pred             hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCC--------c--eeeeE----ecCCCCCeeEEeecccccCcE
Confidence            457889999988888899999999999999999865431        0  11122    235678999999977  7999


Q ss_pred             EEEEeCCCeEEEEEcCCc---eeEeeccCCCCEEEEEeCCCC--CEEEEeeCCCcEEEEECCCC-ceeEEeeecccCeEE
Q 008496          289 LATGSYDGQARIWSTNGD---LKCTLSKHKGPIFSLKWNKKG--DYLLTGSCDKTAIVWDVKTE-EWKQQFEFHSGPTLD  362 (563)
Q Consensus       289 l~sg~~dg~i~vw~~~~~---~~~~~~~h~~~V~~l~~~~~~--~~l~s~s~D~~v~iwd~~~~-~~~~~~~~~~~~~~~  362 (563)
                      ||++++||.|.||...+.   .......|.+.|.+++|.|.+  -.|+++++||.|.|.+.+.. .+..           
T Consensus        73 LAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t-----------  141 (299)
T KOG1332|consen   73 LASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTT-----------  141 (299)
T ss_pred             eeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccc-----------
Confidence            999999999999997654   234567899999999998864  56889999999999876543 1110           


Q ss_pred             EecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCC---C-----------CEEEEEeCCCcEEEEeCC
Q 008496          363 VDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT---G-----------SLLASCSDDVTAKIWNMK  428 (563)
Q Consensus       363 ~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~---~-----------~~las~s~dg~i~iwd~~  428 (563)
                                                  -+....|.-.|++++|.|-   |           +.|+||+.|..|+||+..
T Consensus       142 ----------------------------~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~  193 (299)
T KOG1332|consen  142 ----------------------------SKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFD  193 (299)
T ss_pred             ----------------------------hhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecC
Confidence                                        1123346666777777664   3           569999999999999998


Q ss_pred             CCce--eeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeE---EEEecCCCCCEEEEEEcCCC
Q 008496          429 QDKY--VHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKL---LYSLNGHREPVYSLAFSPTG  503 (563)
Q Consensus       429 ~~~~--~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~---~~~~~~h~~~i~~l~~spdg  503 (563)
                      .+..  -+.|.+|...+..++|.|.-..     ....|||+|.||+|.||..+....   ...+.....+++.++||+.|
T Consensus       194 ~~~w~~e~~l~~H~dwVRDVAwaP~~gl-----~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sG  268 (299)
T KOG1332|consen  194 SDSWKLERTLEGHKDWVRDVAWAPSVGL-----PKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSG  268 (299)
T ss_pred             CcchhhhhhhhhcchhhhhhhhccccCC-----CceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccc
Confidence            7643  3458899999999999997431     234799999999999998763211   12233345689999999999


Q ss_pred             CEEEEEeCCCcEEEEecC
Q 008496          504 EYLASGSLDKSMHIWSLK  521 (563)
Q Consensus       504 ~~lasgs~dg~v~iw~~~  521 (563)
                      ..|+.++.|+.|.+|.-.
T Consensus       269 n~LaVs~GdNkvtlwke~  286 (299)
T KOG1332|consen  269 NILAVSGGDNKVTLWKEN  286 (299)
T ss_pred             cEEEEecCCcEEEEEEeC
Confidence            999999999999999753

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.95  E-value=9.1e-26  Score=200.87  Aligned_cols=266  Identities=21%  Similarity=0.384  Sum_probs=211.4

Q ss_pred             cCCCCeEEEEECC-CCCEEEEEeCCCeEEEEEcCC--cee-EeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCC
Q 008496          272 EKSKDVTTLDWNG-EGTLLATGSYDGQARIWSTNG--DLK-CTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTE  347 (563)
Q Consensus       272 ~~~~~V~~l~~s~-~g~~l~sg~~dg~i~vw~~~~--~~~-~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~  347 (563)
                      +....|.+|+||| ...+++.|+.||+||+|+++.  ... .....|.+||.+++|+.+|..+++|+.|+.+++||+.++
T Consensus        25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~  104 (347)
T KOG0647|consen   25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG  104 (347)
T ss_pred             CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC
Confidence            3456799999999 667777999999999999764  222 345679999999999999999999999999999999999


Q ss_pred             ceeEEeeecccCeEEEecCCC---ceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEE
Q 008496          348 EWKQQFEFHSGPTLDVDWRNN---VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKI  424 (563)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~i  424 (563)
                      + ..++..|.+++..+.|...   ..+++++-|.+|+.||.+...|+.++.- ...+-+++.  -..+++.+..+..|.+
T Consensus       105 Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~L-PeRvYa~Dv--~~pm~vVata~r~i~v  180 (347)
T KOG0647|consen  105 Q-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQL-PERVYAADV--LYPMAVVATAERHIAV  180 (347)
T ss_pred             C-eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeec-cceeeehhc--cCceeEEEecCCcEEE
Confidence            5 5568899999999999754   3689999999999999999888877642 234444443  3567888888999999


Q ss_pred             EeCCCCceeeeeccc----CCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC--eEEEEecCCCC------
Q 008496          425 WNMKQDKYVHDLREH----SKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG--KLLYSLNGHRE------  492 (563)
Q Consensus       425 wd~~~~~~~~~~~~~----~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~--~~~~~~~~h~~------  492 (563)
                      |++..+..  .++.+    .-.+.+|+..++..         ..|.||-.|.+-|..+..+  +.-++++.|+.      
T Consensus       181 ynL~n~~t--e~k~~~SpLk~Q~R~va~f~d~~---------~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~  249 (347)
T KOG0647|consen  181 YNLENPPT--EFKRIESPLKWQTRCVACFQDKD---------GFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVND  249 (347)
T ss_pred             EEcCCCcc--hhhhhcCcccceeeEEEEEecCC---------ceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCC
Confidence            99976532  22222    23467777766654         2478999999999998876  55567777763      


Q ss_pred             ---CEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEec-CCCEEEEEEcCCCCEEEEEEC
Q 008496          493 ---PVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTG-NGGIFEVCWNKEGDKIAACFA  552 (563)
Q Consensus       493 ---~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~-~~~i~~l~w~~~g~~la~~~~  552 (563)
                         +|++|+|+|.-..|+|+|.||+..+||-.....+++++. ...|...+|+.+|+++|.+.+
T Consensus       250 ~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~g  313 (347)
T KOG0647|consen  250 DVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYALG  313 (347)
T ss_pred             ceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEEee
Confidence               477899999999999999999999999887777777654 567999999999999998743

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.95  E-value=1.7e-26  Score=218.03  Aligned_cols=284  Identities=19%  Similarity=0.376  Sum_probs=233.5

Q ss_pred             CCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEE
Q 008496          213 GHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATG  292 (563)
Q Consensus       213 ~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg  292 (563)
                      .|-.-|++++.|...++++||| .|.|+|||+......     .|+..+..       .....-|.++...|||+.|++|
T Consensus       417 ~HGEvVcAvtIS~~trhVyTgG-kgcVKVWdis~pg~k-----~PvsqLdc-------l~rdnyiRSckL~pdgrtLivG  483 (705)
T KOG0639|consen  417 AHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISQPGNK-----SPVSQLDC-------LNRDNYIRSCKLLPDGRTLIVG  483 (705)
T ss_pred             ccCcEEEEEEecCCcceeEecC-CCeEEEeeccCCCCC-----Cccccccc-------cCcccceeeeEecCCCceEEec
Confidence            5777789999999999999986 588999999653211     11111110       0123568899999999999999


Q ss_pred             eCCCeEEEEEcCC---ceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecCCCc
Q 008496          293 SYDGQARIWSTNG---DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNV  369 (563)
Q Consensus       293 ~~dg~i~vw~~~~---~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  369 (563)
                      ++-.++.|||+..   .++..+....-..++|+.+||.+..++|..||.|.|||+.+..                     
T Consensus       484 GeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~---------------------  542 (705)
T KOG0639|consen  484 GEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQT---------------------  542 (705)
T ss_pred             cccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccce---------------------
Confidence            9999999999754   3444555444567889999999999999999999999997653                     


Q ss_pred             eEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEEEEEc
Q 008496          370 SFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWS  449 (563)
Q Consensus       370 ~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~  449 (563)
                                          .++.|.||...+.||.+++||..|-||+-|.++|.||+++++.+... .....|.++.++
T Consensus       543 --------------------~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqh-dF~SQIfSLg~c  601 (705)
T KOG0639|consen  543 --------------------LVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQH-DFSSQIFSLGYC  601 (705)
T ss_pred             --------------------eeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhh-hhhhhheecccC
Confidence                                24567899999999999999999999999999999999988765432 235679999999


Q ss_pred             cCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEE
Q 008496          450 PTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTY  529 (563)
Q Consensus       450 p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~  529 (563)
                      |.+.         +|+.|-.++.+.|-... +...+.+.-|...|.++.|++.|+|+++.+.|+.+..|...-|.-+...
T Consensus       602 P~~d---------WlavGMens~vevlh~s-kp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqs  671 (705)
T KOG0639|consen  602 PTGD---------WLAVGMENSNVEVLHTS-KPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS  671 (705)
T ss_pred             CCcc---------ceeeecccCcEEEEecC-CccceeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeec
Confidence            9886         78999999999888765 4456777789999999999999999999999999999999999887777


Q ss_pred             ecCCCEEEEEEcCCCCEEEEEECCCeEEEEEe
Q 008496          530 TGNGGIFEVCWNKEGDKIAACFANHTVCVLDF  561 (563)
Q Consensus       530 ~~~~~i~~l~w~~~g~~la~~~~~~~v~v~~~  561 (563)
                      +....|.+...+.|.+++++|++++...||.+
T Consensus       672 kE~SsVlsCDIS~ddkyIVTGSGdkkATVYeV  703 (705)
T KOG0639|consen  672 KESSSVLSCDISFDDKYIVTGSGDKKATVYEV  703 (705)
T ss_pred             cccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence            77888999999999999999999988888865

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.95  E-value=1.4e-25  Score=219.88  Aligned_cols=345  Identities=24%  Similarity=0.383  Sum_probs=253.6

Q ss_pred             ceeEecCCCCceEEEEECCCCC---EEEEeeCCCcEEEEecCCCCCcC---------CCCCCCceEEEEEee------ec
Q 008496          207 DVTILEGHTSEVCACAWSPAGS---LLASGSGDSTARIWTIADGTSNG---------GAQNGPLNVLVLKHV------KG  268 (563)
Q Consensus       207 ~~~~l~~h~~~V~~~~~sp~~~---~latgs~D~~i~iW~~~~~~~~~---------~~~~~~~~~~~~~~~------~~  268 (563)
                      .+..|.||.+.|..++|+..+.   +|||+|.|.+||||.+.-.....         .....+.. ..+.+.      ..
T Consensus       183 ~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f-~~l~~i~~~is~ea  261 (764)
T KOG1063|consen  183 RVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVF-MILEEIQYRISFEA  261 (764)
T ss_pred             EEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCcee-eeeeeEEEEEehhh
Confidence            4567899999999999998643   89999999999999975432111         00011110 111111      12


Q ss_pred             ccccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCc---eeE-----eeccCCCCEEEEEeCCCCCEEEEeeCCCcEE
Q 008496          269 RTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGD---LKC-----TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAI  340 (563)
Q Consensus       269 ~~~~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~---~~~-----~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~  340 (563)
                      ...+|...|.++.|+|.+..|++++.|.++.+|..+..   -..     ...+..+.-++..|+|+++.+++-+.-|..+
T Consensus       262 ll~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~h  341 (764)
T KOG1063|consen  262 LLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFH  341 (764)
T ss_pred             hhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEE
Confidence            23367889999999999999999999999999987643   222     2334455689999999999999999999999


Q ss_pred             EEEC-CCCceeE--EeeecccCeEEEecCCCc-eEEEEeCCCeEEEEEcCCCcc----eeeecCCCcceeEEEECCCCCE
Q 008496          341 VWDV-KTEEWKQ--QFEFHSGPTLDVDWRNNV-SFATSSTDNMIYVCKIGENRP----IKTFAGHQGEVNCVKWDPTGSL  412 (563)
Q Consensus       341 iwd~-~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~d~~i~~~~~~~~~~----~~~~~~h~~~i~~~~~~~~~~~  412 (563)
                      +|-. ....|.+  .+..|...+.+++|.+.. .+++.+.|.+-+++-....+.    +..-.-|...++|+++-+....
T Consensus       342 lWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~  421 (764)
T KOG1063|consen  342 LWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQ  421 (764)
T ss_pred             EEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCce
Confidence            9972 2233333  456788899999998654 557889999988876542221    1112347778999999875566


Q ss_pred             EEEEeCCCcEEEEeCCC-------------------------------------------Cc------------------
Q 008496          413 LASCSDDVTAKIWNMKQ-------------------------------------------DK------------------  431 (563)
Q Consensus       413 las~s~dg~i~iwd~~~-------------------------------------------~~------------------  431 (563)
                      +++|.+...+|+|+...                                           +.                  
T Consensus       422 FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~  501 (764)
T KOG1063|consen  422 FVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELT  501 (764)
T ss_pred             eeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhcc
Confidence            78999999999997510                                           00                  


Q ss_pred             ---------------eeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCC-----CeEEEEeCCCCeEEEEecCCC
Q 008496          432 ---------------YVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFD-----STVKLWDVELGKLLYSLNGHR  491 (563)
Q Consensus       432 ---------------~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~d-----g~i~iwd~~~~~~~~~~~~h~  491 (563)
                                     .++.+.+|.-.|++++.+|++.         ++||+...     ..|++|+..+-..+..+.+|.
T Consensus       502 ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gn---------liASaCKS~~~ehAvI~lw~t~~W~~~~~L~~Hs  572 (764)
T KOG1063|consen  502 EPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGN---------LIASACKSSLKEHAVIRLWNTANWLQVQELEGHS  572 (764)
T ss_pred             CCChHHHHHHhccchhhHHhccCceeEEEEEecCCCC---------EEeehhhhCCccceEEEEEeccchhhhheecccc
Confidence                           0112345667788888888775         77777653     359999999988888999999


Q ss_pred             CCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeE-EE---EecCCC-EEEEEEcCCCCEEEEEECCCeEEEEEe
Q 008496          492 EPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIV-KT---YTGNGG-IFEVCWNKEGDKIAACFANHTVCVLDF  561 (563)
Q Consensus       492 ~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~-~~---~~~~~~-i~~l~w~~~g~~la~~~~~~~v~v~~~  561 (563)
                      -.|+.++|||||+||++.|.|+++.+|........ ..   .+.+.. |.+.+|+|++.++|+|+.|++|.||-.
T Consensus       573 LTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~  647 (764)
T KOG1063|consen  573 LTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEE  647 (764)
T ss_pred             eEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEec
Confidence            99999999999999999999999999998543211 11   223333 689999999999999999999999964

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=8e-27  Score=201.54  Aligned_cols=245  Identities=26%  Similarity=0.515  Sum_probs=192.9

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCeEEEEEcC--C--ceeEeeccCCCCEEEEEeCC--CCCEEEEeeCCCcEEEEECCCCc
Q 008496          275 KDVTTLDWNGEGTLLATGSYDGQARIWSTN--G--DLKCTLSKHKGPIFSLKWNK--KGDYLLTGSCDKTAIVWDVKTEE  348 (563)
Q Consensus       275 ~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~--~--~~~~~~~~h~~~V~~l~~~~--~~~~l~s~s~D~~v~iwd~~~~~  348 (563)
                      .-|..+...--|+.|+|++.|++|+|+...  +  .+..+|.+|.+||+.+.|..  -|..|++++.||.|.||.-.++.
T Consensus        12 D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~   91 (299)
T KOG1332|consen   12 DMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGR   91 (299)
T ss_pred             hhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCc
Confidence            345555555568999999999999999864  2  46678999999999999965  78999999999999999877665


Q ss_pred             eeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCC--CCEEEEEeCCCcEEEEe
Q 008496          349 WKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT--GSLLASCSDDVTAKIWN  426 (563)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~--~~~las~s~dg~i~iwd  426 (563)
                      +.+.                                       ..+..|...|++++|-|.  |-+||+++.||.|.|.+
T Consensus        92 w~k~---------------------------------------~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~  132 (299)
T KOG1332|consen   92 WTKA---------------------------------------YEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLT  132 (299)
T ss_pred             hhhh---------------------------------------hhhhhhcccceeecccccccceEEEEeeCCCcEEEEE
Confidence            4332                                       234568999999999885  56789999999999998


Q ss_pred             CCCC-ce--eeeecccCCCEEEEEEccCCCC---CC-CC-CCcEEEEEEeCCCeEEEEeCCCCe--EEEEecCCCCCEEE
Q 008496          427 MKQD-KY--VHDLREHSKEIYTIRWSPTGSG---TN-NP-NQQLILASASFDSTVKLWDVELGK--LLYSLNGHREPVYS  496 (563)
Q Consensus       427 ~~~~-~~--~~~~~~~~~~i~~~~~~p~~~~---~~-~~-~~~~~l~s~s~dg~i~iwd~~~~~--~~~~~~~h~~~i~~  496 (563)
                      .+.. ..  ......|.-.+.+++|.|....   .. .+ .....|+||+.|..|+||+..+++  .-.++.+|.+.|..
T Consensus       133 ~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRD  212 (299)
T KOG1332|consen  133 YDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRD  212 (299)
T ss_pred             EcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhh
Confidence            8765 21  2234579999999999997321   11 11 112358999999999999988763  23458899999999


Q ss_pred             EEEcCCC----CEEEEEeCCCcEEEEecCCC------eeEEEEecCCCEEEEEEcCCCCEEEEEECCCeEEEEE
Q 008496          497 LAFSPTG----EYLASGSLDKSMHIWSLKEG------KIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLD  560 (563)
Q Consensus       497 l~~spdg----~~lasgs~dg~v~iw~~~~~------~~~~~~~~~~~i~~l~w~~~g~~la~~~~~~~v~v~~  560 (563)
                      ++|.|.-    .+||++|.||+|.||.....      ++++.|  ...++.++||..|+.||+++.|..|.+|.
T Consensus       213 VAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f--~~~~w~vSWS~sGn~LaVs~GdNkvtlwk  284 (299)
T KOG1332|consen  213 VAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEF--PDVVWRVSWSLSGNILAVSGGDNKVTLWK  284 (299)
T ss_pred             hhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccC--CcceEEEEEeccccEEEEecCCcEEEEEE
Confidence            9999974    57999999999999987621      234432  45689999999999999999999999884

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.95  E-value=2.1e-25  Score=218.90  Aligned_cols=329  Identities=21%  Similarity=0.356  Sum_probs=248.1

Q ss_pred             eEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCC---CCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEEeC
Q 008496          218 VCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQ---NGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSY  294 (563)
Q Consensus       218 V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~  294 (563)
                      .-+|.|+|....|...-.|..++|||+.+-...+...   .+...++......  .+.+...--|   -|.+ .|+|++.
T Consensus       327 ~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p--~nv~~~~~ac---lp~~-cF~TCSs  400 (1080)
T KOG1408|consen  327 AIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLP--CNVHSPTAAC---LPRG-CFTTCSS  400 (1080)
T ss_pred             eeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeecccc--ccccCccccc---CCcc-ceeEecC
Confidence            4578999999999888899999999997643221110   0000111111000  0111111111   1223 4889999


Q ss_pred             CCeEEEEEcCC----ceeE--ee--------------------------------ccCCCCEEEEEeCCCCCEEEEeeCC
Q 008496          295 DGQARIWSTNG----DLKC--TL--------------------------------SKHKGPIFSLKWNKKGDYLLTGSCD  336 (563)
Q Consensus       295 dg~i~vw~~~~----~~~~--~~--------------------------------~~h~~~V~~l~~~~~~~~l~s~s~D  336 (563)
                      |++||+|++.+    ....  .+                                ......+.+++.+|+|++|++|..-
T Consensus       401 D~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~  480 (1080)
T KOG1408|consen  401 DGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRG  480 (1080)
T ss_pred             CCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCcc
Confidence            99999999765    2100  00                                0123468899999999999999999


Q ss_pred             CcEEEEECCCCceeEEeeecccCeEEEecCC----CceEEEEeCCCeEEEEEcCCC-cceeeecCCCcceeEEEECCCC-
Q 008496          337 KTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN----NVSFATSSTDNMIYVCKIGEN-RPIKTFAGHQGEVNCVKWDPTG-  410 (563)
Q Consensus       337 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~d~~i~~~~~~~~-~~~~~~~~h~~~i~~~~~~~~~-  410 (563)
                      |+++||++...+....++.|...++++.+..    ...+++++.|..|+++|+..+ .+++++.+|...|+++.|--.| 
T Consensus       481 GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gl  560 (1080)
T KOG1408|consen  481 GNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGL  560 (1080)
T ss_pred             CceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCC
Confidence            9999999999888888999999999998864    356789999999999999765 4788999999999999998777 


Q ss_pred             -CEEEEEeCCCcEEEEeCCCC-ceeeeecc-----cCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeE
Q 008496          411 -SLLASCSDDVTAKIWNMKQD-KYVHDLRE-----HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKL  483 (563)
Q Consensus       411 -~~las~s~dg~i~iwd~~~~-~~~~~~~~-----~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~  483 (563)
                       ...++|+.|..|. |+.... .....+..     ....++.++..|...         ++++++.|..|+|||+.+|+.
T Consensus       561 n~~MiscGADksim-Fr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k---------~v~t~cQDrnirif~i~sgKq  630 (1080)
T KOG1408|consen  561 NRKMISCGADKSIM-FRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSK---------LVVTVCQDRNIRIFDIESGKQ  630 (1080)
T ss_pred             ceEEEeccCchhhh-eehhccccCceeccccccccccceEEEeeeCCCcc---------eEEEEecccceEEEeccccce
Confidence             5678999998765 343321 11111111     234678888877654         789999999999999999999


Q ss_pred             EEEecC---CCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEecCC-CEEEEEEcCCCCEEEEEECCCeEEEE
Q 008496          484 LYSLNG---HREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNG-GIFEVCWNKEGDKIAACFANHTVCVL  559 (563)
Q Consensus       484 ~~~~~~---h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~~~-~i~~l~w~~~g~~la~~~~~~~v~v~  559 (563)
                      ...+++   |.+..-.+...|.|-|||+...|+++.++|.-+|+++.+..+++ .|+.+.|.+|=++|...++||.|.||
T Consensus       631 ~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW  710 (1080)
T KOG1408|consen  631 VKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVW  710 (1080)
T ss_pred             eeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEE
Confidence            999875   55667789999999999999999999999999999998888765 47899999999999999999999999


Q ss_pred             Eee
Q 008496          560 DFR  562 (563)
Q Consensus       560 ~~~  562 (563)
                      -+-
T Consensus       711 ~lp  713 (1080)
T KOG1408|consen  711 KLP  713 (1080)
T ss_pred             ECc
Confidence            763

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=1.2e-26  Score=230.04  Aligned_cols=288  Identities=23%  Similarity=0.392  Sum_probs=221.6

Q ss_pred             ceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECC-CCCEEEEEeCC
Q 008496          217 EVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG-EGTLLATGSYD  295 (563)
Q Consensus       217 ~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~-~g~~l~sg~~d  295 (563)
                      ...+++.+++-.-++.+| -..++|+.++......     +.     .+..+...........+.|+. +.++|||++.+
T Consensus        41 ~~nAIs~nr~~~qiv~AG-rs~lklyai~~~~~~~-----~~-----~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~n  109 (839)
T KOG0269|consen   41 KANAISVNRDINQIVVAG-RSLLKLYAINPNDFSE-----KC-----NHRFKTKQNKFYSAADVKWGQLYSNLIATCSTN  109 (839)
T ss_pred             ccceEeecCCcceeEEec-ccceeeEeeCcccCCc-----ce-----eeecccccceeeehhhcccccchhhhheeecCC
Confidence            355677778866666554 4678888876432211     01     111011111223355677875 56899999999


Q ss_pred             CeEEEEEcCC----ceeEeeccCCCCEEEEEeCCCC-CEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecC--CC
Q 008496          296 GQARIWSTNG----DLKCTLSKHKGPIFSLKWNKKG-DYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR--NN  368 (563)
Q Consensus       296 g~i~vw~~~~----~~~~~~~~h~~~V~~l~~~~~~-~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~--~~  368 (563)
                      |.|.+||++.    ++...|..|+..|.++.|++.. ++|++||.||+|++||++..+-..++......+.++.|.  ..
T Consensus       110 G~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~  189 (839)
T KOG0269|consen  110 GVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYG  189 (839)
T ss_pred             CcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCC
Confidence            9999999875    3445788999999999999865 678999999999999999998888888888889999885  46


Q ss_pred             ceEEEEeCCCeEEEEEcCCC-cceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCce--eeeecccCCCEEE
Q 008496          369 VSFATSSTDNMIYVCKIGEN-RPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKY--VHDLREHSKEIYT  445 (563)
Q Consensus       369 ~~~~~~~~d~~i~~~~~~~~-~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~--~~~~~~~~~~i~~  445 (563)
                      ..|++....|.+..||++.. ++...+.+|.++|.|+.|+|++.+||||+.|++|+|||+.+.+.  .+++. -..++.+
T Consensus       190 ~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tIn-Tiapv~r  268 (839)
T KOG0269|consen  190 NKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTIN-TIAPVGR  268 (839)
T ss_pred             ceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEe-ecceeee
Confidence            78999999999999999864 56788899999999999999999999999999999999986543  23322 2467899


Q ss_pred             EEEccCCCCCCCCCCcEEEEEEeC--CCeEEEEeCCCCeE-EEEecCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEecC
Q 008496          446 IRWSPTGSGTNNPNQQLILASASF--DSTVKLWDVELGKL-LYSLNGHREPVYSLAFSP-TGEYLASGSLDKSMHIWSLK  521 (563)
Q Consensus       446 ~~~~p~~~~~~~~~~~~~l~s~s~--dg~i~iwd~~~~~~-~~~~~~h~~~i~~l~~sp-dg~~lasgs~dg~v~iw~~~  521 (563)
                      ++|.|...        ..||++++  |-.|+|||++..-. ..++..|+..++.++|.. |...|-+++.||+|..-.++
T Consensus       269 VkWRP~~~--------~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~k  340 (839)
T KOG0269|consen  269 VKWRPARS--------YHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFK  340 (839)
T ss_pred             eeeccCcc--------chhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHHHhhhh
Confidence            99999754        36787765  77899999986543 456788999999999954 56678899999988766666


Q ss_pred             CCe
Q 008496          522 EGK  524 (563)
Q Consensus       522 ~~~  524 (563)
                      ++.
T Consensus       341 nat  343 (839)
T KOG0269|consen  341 NAT  343 (839)
T ss_pred             ccc
Confidence            543

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.94  E-value=1.3e-23  Score=199.05  Aligned_cols=311  Identities=22%  Similarity=0.352  Sum_probs=228.5

Q ss_pred             CCceEEEEECCCC-CEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEEe
Q 008496          215 TSEVCACAWSPAG-SLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGS  293 (563)
Q Consensus       215 ~~~V~~~~~sp~~-~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~  293 (563)
                      ...|..+.|+|.+ +++.|. +.|.+..|++..+....            +.-.-.... .+-|+|++|.++|. +++|.
T Consensus       200 ne~v~~a~FHPtd~nliit~-Gk~H~~Fw~~~~~~l~k------------~~~~fek~e-kk~Vl~v~F~engd-viTgD  264 (626)
T KOG2106|consen  200 NEVVFLATFHPTDPNLIITC-GKGHLYFWTLRGGSLVK------------RQGIFEKRE-KKFVLCVTFLENGD-VITGD  264 (626)
T ss_pred             cceEEEEEeccCCCcEEEEe-CCceEEEEEccCCceEE------------Eeecccccc-ceEEEEEEEcCCCC-EEeec
Confidence            3567899999976 556665 56889999987654211            111011112 27799999999997 56999


Q ss_pred             CCCeEEEEEcCCc-eeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEe--eecccCeEEEecCCCce
Q 008496          294 YDGQARIWSTNGD-LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQF--EFHSGPTLDVDWRNNVS  370 (563)
Q Consensus       294 ~dg~i~vw~~~~~-~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~~  370 (563)
                      .+|.|.||+..+. .......|.+.|++|+.-.+|. |+||+.|+.|..||-. -+..+..  ....+++..+.-.... 
T Consensus       265 S~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gt-llSGgKDRki~~Wd~~-y~k~r~~elPe~~G~iRtv~e~~~d-  341 (626)
T KOG2106|consen  265 SGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGT-LLSGGKDRKIILWDDN-YRKLRETELPEQFGPIRTVAEGKGD-  341 (626)
T ss_pred             CCceEEEEeCCCceEEeEeeecCCceEEEEEecCcc-EeecCccceEEecccc-ccccccccCchhcCCeeEEecCCCc-
Confidence            9999999998764 3333448999999999999986 5569999999999932 2222222  2223445444433333 


Q ss_pred             EEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEEEEEcc
Q 008496          371 FATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSP  450 (563)
Q Consensus       371 ~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p  450 (563)
                      +..+.+.+.|..-.+...-. .+..+|......++.+|+..+++||+.|+.+++|+  ..++..+. .-..++.++.|.|
T Consensus       342 i~vGTtrN~iL~Gt~~~~f~-~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~-~~~d~~~~~~fhp  417 (626)
T KOG2106|consen  342 ILVGTTRNFILQGTLENGFT-LTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTK-IIEDPAECADFHP  417 (626)
T ss_pred             EEEeeccceEEEeeecCCce-EEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEE-EecCceeEeeccC
Confidence            66666666666555544433 33458999999999999999999999999999999  33443332 2346788999999


Q ss_pred             CCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCe-e---E
Q 008496          451 TGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGK-I---V  526 (563)
Q Consensus       451 ~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~-~---~  526 (563)
                      .|          .+|.|+..|...+.|.++...+..-.. ..++++++|+|+|.+||.||.|+.|+||.+.... .   +
T Consensus       418 sg----------~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~  486 (626)
T KOG2106|consen  418 SG----------VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRV  486 (626)
T ss_pred             cc----------eEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEe
Confidence            77          589999999999999998666555454 7899999999999999999999999999986543 2   2


Q ss_pred             EEEecCCCEEEEEEcCCCCEEEEEECCCeEEEE
Q 008496          527 KTYTGNGGIFEVCWNKEGDKIAACFANHTVCVL  559 (563)
Q Consensus       527 ~~~~~~~~i~~l~w~~~g~~la~~~~~~~v~v~  559 (563)
                      ....+ ..|+.|.|++|+++|..-+.|-.+-.|
T Consensus       487 ~k~~g-s~ithLDwS~Ds~~~~~~S~d~eiLyW  518 (626)
T KOG2106|consen  487 GKCSG-SPITHLDWSSDSQFLVSNSGDYEILYW  518 (626)
T ss_pred             eeecC-ceeEEeeecCCCceEEeccCceEEEEE
Confidence            23334 679999999999999998888777666

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=1.3e-24  Score=194.01  Aligned_cols=281  Identities=22%  Similarity=0.379  Sum_probs=203.3

Q ss_pred             ecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECC--CCCE
Q 008496          211 LEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG--EGTL  288 (563)
Q Consensus       211 l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~--~g~~  288 (563)
                      -.+|.+-|+++.|.+-|+.+||++.|++++|||+......         -.    ...+-..+.+.|..+.|-+  -|+.
T Consensus         9 ~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~---------W~----~Ts~Wrah~~Si~rV~WAhPEfGqv   75 (361)
T KOG2445|consen    9 DSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGT---------WS----CTSSWRAHDGSIWRVVWAHPEFGQV   75 (361)
T ss_pred             ccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCc---------eE----EeeeEEecCCcEEEEEecCccccce
Confidence            3579999999999999999999999999999997543221         01    1111223567899999976  4899


Q ss_pred             EEEEeCCCeEEEEEcCC----------ceeEeeccCCCCEEEEEeCCC--CCEEEEeeCCCcEEEEECCCCceeEEeeec
Q 008496          289 LATGSYDGQARIWSTNG----------DLKCTLSKHKGPIFSLKWNKK--GDYLLTGSCDKTAIVWDVKTEEWKQQFEFH  356 (563)
Q Consensus       289 l~sg~~dg~i~vw~~~~----------~~~~~~~~h~~~V~~l~~~~~--~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~  356 (563)
                      +|++++|+++.||....          ....++....+.|+.++|.|.  |-.|++++.||++|||+.-..--...    
T Consensus        76 vA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~----  151 (361)
T KOG2445|consen   76 VATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQ----  151 (361)
T ss_pred             EEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCcccccc----
Confidence            99999999999998521          134567778899999999985  56789999999999998643211111    


Q ss_pred             ccCeEEEecCCCceEEEEeCCCeEEEEEcCCCc--ceeeecCCCcceeEEEECCC---CCEEEEEeCC-----CcEEEEe
Q 008496          357 SGPTLDVDWRNNVSFATSSTDNMIYVCKIGENR--PIKTFAGHQGEVNCVKWDPT---GSLLASCSDD-----VTAKIWN  426 (563)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~--~~~~~~~h~~~i~~~~~~~~---~~~las~s~d-----g~i~iwd  426 (563)
                                                |.+...-  .+.....+.....|+.|+|.   ..+||.|+++     +.++||.
T Consensus       152 --------------------------W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye  205 (361)
T KOG2445|consen  152 --------------------------WTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYE  205 (361)
T ss_pred             --------------------------chhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEE
Confidence                                      1111100  01112234556779999974   4678888887     4788887


Q ss_pred             CCCC----ceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC--------------------e
Q 008496          427 MKQD----KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG--------------------K  482 (563)
Q Consensus       427 ~~~~----~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~--------------------~  482 (563)
                      ....    ..+.++..|..+|+.|+|.|+-..     ...+||+++.|| |+||++...                    +
T Consensus       206 ~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr-----~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~  279 (361)
T KOG2445|consen  206 YNENGRKWLKVAELPDHTDPIRDISWAPNIGR-----SYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVE  279 (361)
T ss_pred             ecCCcceeeeehhcCCCCCcceeeeeccccCC-----ceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceE
Confidence            6433    235677899999999999997431     235899999999 999998631                    2


Q ss_pred             EEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCC---CeeEEEEecCCCEEEEEE
Q 008496          483 LLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKE---GKIVKTYTGNGGIFEVCW  540 (563)
Q Consensus       483 ~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~---~~~~~~~~~~~~i~~l~w  540 (563)
                      .+..+.+|.+.|..+.|+-.|..|++.|.||.|++|...-   .+++..+...+.+....+
T Consensus       280 ~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany~n~~kC~sv~~~e~~~~~~~~  340 (361)
T KOG2445|consen  280 KVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANYNNLWKCTSVLKAEGSVTKPDF  340 (361)
T ss_pred             EeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhhhhhheeeeEEeccCCCCCccc
Confidence            3455778999999999999999999999999999998642   345555554444443333

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.94  E-value=5.2e-25  Score=195.16  Aligned_cols=298  Identities=20%  Similarity=0.373  Sum_probs=227.6

Q ss_pred             eEecCCCCceEEEEECCC-CCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEe----eecccccCCCCeEEEEEC
Q 008496          209 TILEGHTSEVCACAWSPA-GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKH----VKGRTNEKSKDVTTLDWN  283 (563)
Q Consensus       209 ~~l~~h~~~V~~~~~sp~-~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~V~~l~~s  283 (563)
                      .+.+.|.+.|+++...|. |+++++|+.||.|.+||+.+.......      -+..++    .+.+.+.|...|.++.|-
T Consensus        37 d~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s------~li~k~~c~v~~~h~~~Hky~iss~~Wy  110 (397)
T KOG4283|consen   37 DFVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEAS------GLIAKHKCIVAKQHENGHKYAISSAIWY  110 (397)
T ss_pred             ceeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhc------cceeheeeeccccCCccceeeeeeeEEe
Confidence            345679999999999995 899999999999999999875421111      011122    234556677889999999


Q ss_pred             C-CCCEEEEEeCCCeEEEEEcCCceeEeeccCCCCEEEEEeCCCC---CEEEEeeCCCcEEEEECCCCceeEEeeecccC
Q 008496          284 G-EGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKG---DYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGP  359 (563)
Q Consensus       284 ~-~g~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~---~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~  359 (563)
                      | |.-++.+++.|.+++|||.+......--...+.|++-+|+|-.   ..+++|..|-.|++-|+.+|.+...+..|.+.
T Consensus       111 P~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~  190 (397)
T KOG4283|consen  111 PIDTGMFTSSSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDG  190 (397)
T ss_pred             eecCceeecccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCc
Confidence            9 6678899999999999999876555444577889999999854   35667778889999999999999999999999


Q ss_pred             eEEEecCCCc--eEEEEeCCCeEEEEEcCCC-cce--------------eeecCCCcceeEEEECCCCCEEEEEeCCCcE
Q 008496          360 TLDVDWRNNV--SFATSSTDNMIYVCKIGEN-RPI--------------KTFAGHQGEVNCVKWDPTGSLLASCSDDVTA  422 (563)
Q Consensus       360 ~~~~~~~~~~--~~~~~~~d~~i~~~~~~~~-~~~--------------~~~~~h~~~i~~~~~~~~~~~las~s~dg~i  422 (563)
                      ++.++|.+..  .+++++.|+.|++||++.. .+.              ++-..|.+.|+.++|..++.++++++.|..+
T Consensus       191 vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~  270 (397)
T KOG4283|consen  191 VLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRI  270 (397)
T ss_pred             eEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccce
Confidence            9999997654  5678999999999998643 111              2234688899999999999999999999999


Q ss_pred             EEEeCCCCceee-ee--cccCCCEEEEEEcc-CCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEE
Q 008496          423 KIWNMKQDKYVH-DL--REHSKEIYTIRWSP-TGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLA  498 (563)
Q Consensus       423 ~iwd~~~~~~~~-~~--~~~~~~i~~~~~~p-~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~  498 (563)
                      ++|+..+++... .+  .-|.+. ..+++.- .+.     ..  .++---.++.+.++++-.+..+..+..|...|.+.+
T Consensus       271 r~wn~~~G~ntl~~~g~~~~n~~-~~~~~~~~~~~-----s~--vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~  342 (397)
T KOG4283|consen  271 RVWNMESGRNTLREFGPIIHNQT-TSFAVHIQSMD-----SD--VFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAA  342 (397)
T ss_pred             EEeecccCccccccccccccccc-ccceEEEeecc-----cc--eEEEEecCCeEEEEEccCceEEEeeecccceeeEEe
Confidence            999988765321 11  011111 1111110 000     01  223333458899999999999999999999999999


Q ss_pred             EcCCCCEEEEEeCCCcEEEEec
Q 008496          499 FSPTGEYLASGSLDKSMHIWSL  520 (563)
Q Consensus       499 ~spdg~~lasgs~dg~v~iw~~  520 (563)
                      |-|+=+-+.+|+.|+.|..|..
T Consensus       343 ~~~~fq~~~tg~~d~ni~~w~p  364 (397)
T KOG4283|consen  343 YRPDFEQCFTGDMNGNIYMWSP  364 (397)
T ss_pred             ecCchhhhhccccCCccccccc
Confidence            9999999999999999999986

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=2e-25  Score=199.58  Aligned_cols=272  Identities=26%  Similarity=0.404  Sum_probs=213.1

Q ss_pred             cCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcC-CceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECC----C
Q 008496          272 EKSKDVTTLDWNGEGTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVK----T  346 (563)
Q Consensus       272 ~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~----~  346 (563)
                      +|...|..++-...-..+.+++.|.+.+||.++ |.......+|.+.|.+++|++.+..+++++.|++..||...    .
T Consensus       146 GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~v  225 (481)
T KOG0300|consen  146 GHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEV  225 (481)
T ss_pred             ccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcC
Confidence            345667777766666689999999999999976 67778899999999999999999999999999999999621    1


Q ss_pred             CceeEEeeecccCeEEEec-CCCceEEEE--eCC-CeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcE
Q 008496          347 EEWKQQFEFHSGPTLDVDW-RNNVSFATS--STD-NMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTA  422 (563)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~d-~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i  422 (563)
                      .+... -..|.+. -.... .....+..+  ..| .+|+       .|+..|.||.+.|.+..|-..|+.++++|.|.+.
T Consensus       226 P~~~a-~~~hSsE-eE~e~sDe~~~d~d~~~~sD~~tiR-------vPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTA  296 (481)
T KOG0300|consen  226 PSNNA-PSDHSSE-EEEEHSDEHNRDTDSSEKSDGHTIR-------VPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTA  296 (481)
T ss_pred             CCCCC-CCCCCch-hhhhcccccccccccccccCCceee-------eeeeeeeccccceEehhhhcCcceeeeeeccccc
Confidence            10000 0000000 00000 011111111  112 2333       3778899999999999999999999999999999


Q ss_pred             EEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC-eEEEEecCCCCCEEEEEEcC
Q 008496          423 KIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG-KLLYSLNGHREPVYSLAFSP  501 (563)
Q Consensus       423 ~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~h~~~i~~l~~sp  501 (563)
                      .+||..++..++.+.+|....+.++-.|.-         .+++++|.|-+.|+||.+.. ..+..+.||...|+++.|.-
T Consensus       297 nlwDVEtge~v~~LtGHd~ELtHcstHptQ---------rLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~  367 (481)
T KOG0300|consen  297 NLWDVETGEVVNILTGHDSELTHCSTHPTQ---------RLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNT  367 (481)
T ss_pred             eeeeeccCceeccccCcchhccccccCCcc---------eEEEEeccCceeEeccchhhcceeeeecccccceeEEEEec
Confidence            999999999999999999998887766653         37889999999999999843 44678899999999999987


Q ss_pred             CCCEEEEEeCCCcEEEEecCCCe-eEEEEecCCCEEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496          502 TGEYLASGSLDKSMHIWSLKEGK-IVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLDFR  562 (563)
Q Consensus       502 dg~~lasgs~dg~v~iw~~~~~~-~~~~~~~~~~i~~l~w~~~g~~la~~~~~~~v~v~~~~  562 (563)
                      |. .+++||.|.+|+|||+++.+ .+.++.....++-++.+..+..+|.-..|..|++||+.
T Consensus       368 dd-~vVSgSDDrTvKvWdLrNMRsplATIRtdS~~NRvavs~g~~iIAiPhDNRqvRlfDln  428 (481)
T KOG0300|consen  368 DD-RVVSGSDDRTVKVWDLRNMRSPLATIRTDSPANRVAVSKGHPIIAIPHDNRQVRLFDLN  428 (481)
T ss_pred             CC-ceeecCCCceEEEeeeccccCcceeeecCCccceeEeecCCceEEeccCCceEEEEecC
Confidence            64 58899999999999998754 67788888889999999999999999999999999973

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.94  E-value=1.3e-25  Score=210.76  Aligned_cols=248  Identities=27%  Similarity=0.509  Sum_probs=197.9

Q ss_pred             cCCCCeEEEEECCCC-CEEEEEeCCCeEEEEEcCC-----------ceeEeeccCCCCEEEEEeCCCCC-EEEEeeCCCc
Q 008496          272 EKSKDVTTLDWNGEG-TLLATGSYDGQARIWSTNG-----------DLKCTLSKHKGPIFSLKWNKKGD-YLLTGSCDKT  338 (563)
Q Consensus       272 ~~~~~V~~l~~s~~g-~~l~sg~~dg~i~vw~~~~-----------~~~~~~~~h~~~V~~l~~~~~~~-~l~s~s~D~~  338 (563)
                      .+.+.|..+..-|+. .++++++..+.+.|||...           ....++.+|+..-++|.|++... +|++++.|++
T Consensus       122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~  201 (422)
T KOG0264|consen  122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHT  201 (422)
T ss_pred             cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCc
Confidence            356778888888854 6777888899999999542           11237889999889999998654 6899999999


Q ss_pred             EEEEECCCCceeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCC-CCEEEEEe
Q 008496          339 AIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT-GSLLASCS  417 (563)
Q Consensus       339 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~-~~~las~s  417 (563)
                      |++||+......       .                           ....+...|.+|...|..++|++. ..+|++++
T Consensus       202 i~lwdi~~~~~~-------~---------------------------~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~  247 (422)
T KOG0264|consen  202 ICLWDINAESKE-------D---------------------------KVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVG  247 (422)
T ss_pred             EEEEeccccccC-------C---------------------------ccccceEEeecCCcceehhhccccchhhheeec
Confidence            999998754211       0                           012356678899999999999985 46789999


Q ss_pred             CCCcEEEEeCC--CCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC-eEEEEecCCCCCE
Q 008496          418 DDVTAKIWNMK--QDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG-KLLYSLNGHREPV  494 (563)
Q Consensus       418 ~dg~i~iwd~~--~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~h~~~i  494 (563)
                      +|+.+.|||++  +.++.+...+|.+++.|++|+|-+.        .+||+||.|++|++||+|+- ++++++.+|...|
T Consensus       248 dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~--------~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev  319 (422)
T KOG0264|consen  248 DDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNE--------FILATGSADKTVALWDLRNLNKPLHTFEGHEDEV  319 (422)
T ss_pred             CCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCC--------ceEEeccCCCcEEEeechhcccCceeccCCCcce
Confidence            99999999999  5667778889999999999999763        58999999999999999974 4688999999999


Q ss_pred             EEEEEcCCC-CEEEEEeCCCcEEEEecCCCee--------------EEEEec-CCCEEEEEEcCCCC-EEEEEECCCeEE
Q 008496          495 YSLAFSPTG-EYLASGSLDKSMHIWSLKEGKI--------------VKTYTG-NGGIFEVCWNKEGD-KIAACFANHTVC  557 (563)
Q Consensus       495 ~~l~~spdg-~~lasgs~dg~v~iw~~~~~~~--------------~~~~~~-~~~i~~l~w~~~g~-~la~~~~~~~v~  557 (563)
                      ++|.|||.. ..||+++.|+++.|||+..-.-              +-...+ ...|.+++|+|.-- .|++...|+.+.
T Consensus       320 ~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~Lq  399 (422)
T KOG0264|consen  320 FQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQ  399 (422)
T ss_pred             EEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEE
Confidence            999999975 7889999999999999965321              222222 24589999999886 455567788899


Q ss_pred             EEEe
Q 008496          558 VLDF  561 (563)
Q Consensus       558 v~~~  561 (563)
                      ||..
T Consensus       400 IW~~  403 (422)
T KOG0264|consen  400 IWQM  403 (422)
T ss_pred             Eeec
Confidence            9964

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=1.4e-24  Score=219.64  Aligned_cols=269  Identities=23%  Similarity=0.384  Sum_probs=217.3

Q ss_pred             CCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCc--eeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCcee
Q 008496          273 KSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGD--LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWK  350 (563)
Q Consensus       273 ~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~--~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~  350 (563)
                      |...-+.++|.|+|.+|.+++.||.|++|+....  ...++..+...|++++-.  +++|++|+.+++|.+|....++..
T Consensus        12 ht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~~~~   89 (933)
T KOG1274|consen   12 HTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY--SNHFLTGSEQNTVLRYKFPSGEED   89 (933)
T ss_pred             ccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec--ccceEEeeccceEEEeeCCCCCcc
Confidence            3455899999999999999999999999986543  223444488888888754  459999999999999998877655


Q ss_pred             EEeeecccCeEEEecCCC-ceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCC
Q 008496          351 QQFEFHSGPTLDVDWRNN-VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQ  429 (563)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~  429 (563)
                      ..+....-|+.++.+..+ ..++.++.|-.|.+.+.......+.+++|.++|.++.|+|.+++||+.+-||.++||++.+
T Consensus        90 ~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~  169 (933)
T KOG1274|consen   90 TILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQD  169 (933)
T ss_pred             ceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEccc
Confidence            445444556777777654 4667888899999999998888999999999999999999999999999999999999998


Q ss_pred             Cceeeeeccc--------CCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecC--CCCCEEEEEE
Q 008496          430 DKYVHDLREH--------SKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNG--HREPVYSLAF  499 (563)
Q Consensus       430 ~~~~~~~~~~--------~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~--h~~~i~~l~~  499 (563)
                      +.+.+.+..-        ...+..++|+|.+.         .++..+.|+.|++|+.......+.+..  +...+..++|
T Consensus       170 ~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g---------~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~w  240 (933)
T KOG1274|consen  170 GILSKTLTGVDKDNEFILSRICTRLAWHPKGG---------TLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQW  240 (933)
T ss_pred             chhhhhcccCCccccccccceeeeeeecCCCC---------eEEeeccCCeEEEEccCCceeheeecccccccceEEEEE
Confidence            8776655421        44567899999864         467778899999999999888887753  4445899999


Q ss_pred             cCCCCEEEEEeCCCcEEEEecCCCeeEEEEecCCCEEEEEEcCCCCEEEEEECCCe
Q 008496          500 SPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHT  555 (563)
Q Consensus       500 spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~~~~i~~l~w~~~g~~la~~~~~~~  555 (563)
                      ||+|+|||+++.||.|.|||+++...   ......|+.++|.|+++.|-.-...|.
T Consensus       241 sPnG~YiAAs~~~g~I~vWnv~t~~~---~~~~~~Vc~~aw~p~~n~it~~~~~g~  293 (933)
T KOG1274|consen  241 SPNGKYIAASTLDGQILVWNVDTHER---HEFKRAVCCEAWKPNANAITLITALGT  293 (933)
T ss_pred             cCCCcEEeeeccCCcEEEEecccchh---ccccceeEEEecCCCCCeeEEEeeccc
Confidence            99999999999999999999987222   223456999999999987665554443

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=1.2e-25  Score=226.20  Aligned_cols=242  Identities=21%  Similarity=0.371  Sum_probs=178.6

Q ss_pred             eec-cCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeeccc-------------CeEEEe-c-C-CCceEE
Q 008496          310 TLS-KHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSG-------------PTLDVD-W-R-NNVSFA  372 (563)
Q Consensus       310 ~~~-~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~-------------~~~~~~-~-~-~~~~~~  372 (563)
                      .+. .|.++|++++|+++|+||++|+.|+.|+||.+...+....-.....             |+..-. - . .....-
T Consensus       261 e~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~  340 (712)
T KOG0283|consen  261 EISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSR  340 (712)
T ss_pred             ccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccc
Confidence            345 8999999999999999999999999999998765322110000000             000000 0 0 000000


Q ss_pred             EEeCCCeEEEEE---cCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEEEEEc
Q 008496          373 TSSTDNMIYVCK---IGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWS  449 (563)
Q Consensus       373 ~~~~d~~i~~~~---~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~  449 (563)
                      .+.....+.+-.   .-..+|+..|.||.+.|..|.|+.+ .+|+|+|.|.++|+|++....++..|. |..-|+|++|.
T Consensus       341 ~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFn  418 (712)
T KOG0283|consen  341 KGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFN  418 (712)
T ss_pred             cccCCccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEec
Confidence            000111111100   0135788999999999999999964 578899999999999999999988774 99999999999


Q ss_pred             cCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEE
Q 008496          450 PTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTY  529 (563)
Q Consensus       450 p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~  529 (563)
                      |...        .+++|||-||.||||++...+.+.-.. ...-|++++|+|||++.+.|+.+|.+++|++...++...+
T Consensus       419 PvDD--------ryFiSGSLD~KvRiWsI~d~~Vv~W~D-l~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~  489 (712)
T KOG0283|consen  419 PVDD--------RYFISGSLDGKVRLWSISDKKVVDWND-LRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDF  489 (712)
T ss_pred             ccCC--------CcEeecccccceEEeecCcCeeEeehh-hhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEee
Confidence            9753        489999999999999998776665444 3478999999999999999999999999999988876665


Q ss_pred             ec---------CCCEEEEEEcCCC-CEEEEEECCCeEEEEEee
Q 008496          530 TG---------NGGIFEVCWNKEG-DKIAACFANHTVCVLDFR  562 (563)
Q Consensus       530 ~~---------~~~i~~l~w~~~g-~~la~~~~~~~v~v~~~~  562 (563)
                      .-         +..|+.+.+.|.. +.|.+.+.|..|+|||.|
T Consensus       490 ~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~  532 (712)
T KOG0283|consen  490 HIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGR  532 (712)
T ss_pred             eEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEecc
Confidence            31         2369999999744 568888899999999984

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.94  E-value=1.9e-23  Score=197.88  Aligned_cols=325  Identities=19%  Similarity=0.293  Sum_probs=245.7

Q ss_pred             ceeEecCCCCceEEEEECCCCCEEEEeeCCC--------cEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeE
Q 008496          207 DVTILEGHTSEVCACAWSPAGSLLASGSGDS--------TARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVT  278 (563)
Q Consensus       207 ~~~~l~~h~~~V~~~~~sp~~~~latgs~D~--------~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~  278 (563)
                      ..+.+-||+..|.|++.||+.-.+++|-.-|        .+||||-.+-.          ...++.       .-...|+
T Consensus        96 ~Qr~y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~----------TL~V~g-------~f~~GV~  158 (626)
T KOG2106|consen   96 SQRHYLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLS----------TLHVIG-------FFDRGVT  158 (626)
T ss_pred             hcccccCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeecccccce----------eeeeec-------cccccce
Confidence            3456679999999999999999999887655        48999843211          111221       2246799


Q ss_pred             EEEECC--CCCEEEEE--eCCCeEEEEEcCCc-eeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEe
Q 008496          279 TLDWNG--EGTLLATG--SYDGQARIWSTNGD-LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQF  353 (563)
Q Consensus       279 ~l~~s~--~g~~l~sg--~~dg~i~vw~~~~~-~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~  353 (563)
                      |++||+  .|.+|..-  +.+..+.+|+-..+ ...........|....|+|.+..|+.....+.+.+|+++++.+.+..
T Consensus       159 ~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~  238 (626)
T KOG2106|consen  159 CVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQ  238 (626)
T ss_pred             eeeecccCCCceEEEecCCCccccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEe
Confidence            999998  35555544  33457889986533 22234445667899999998877776667789999999988766543


Q ss_pred             ---eec-ccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCC
Q 008496          354 ---EFH-SGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQ  429 (563)
Q Consensus       354 ---~~~-~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~  429 (563)
                         +.+ ..-++++.|..+...+++..+|.|.+|+.+..+..+....|.+.|-+++.-.+|.+| ||+.|..|..||-+-
T Consensus       239 ~~fek~ekk~Vl~v~F~engdviTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gtll-SGgKDRki~~Wd~~y  317 (626)
T KOG2106|consen  239 GIFEKREKKFVLCVTFLENGDVITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLL-SGGKDRKIILWDDNY  317 (626)
T ss_pred             eccccccceEEEEEEEcCCCCEEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEe-ecCccceEEeccccc
Confidence               222 235789999999999999999999999998887776666999999999999999876 499999999998321


Q ss_pred             Cc-----------eeee-----------------------------ecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeC
Q 008496          430 DK-----------YVHD-----------------------------LREHSKEIYTIRWSPTGSGTNNPNQQLILASASF  469 (563)
Q Consensus       430 ~~-----------~~~~-----------------------------~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~  469 (563)
                      .+           .+++                             ..+|......++-.|..         ..+++++.
T Consensus       318 ~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~---------~q~~T~gq  388 (626)
T KOG2106|consen  318 RKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSK---------NQLLTCGQ  388 (626)
T ss_pred             cccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCCh---------hheeeccC
Confidence            10           0111                             11233334444444432         25889999


Q ss_pred             CCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEecCCCEEEEEEcCCCCEEEE
Q 008496          470 DSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAA  549 (563)
Q Consensus       470 dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~~~~i~~l~w~~~g~~la~  549 (563)
                      |+.++||+  ..++.++.. -..++.++.|+|.| .+|.|+..|...+.|.++..++..-..+..+..+.++|+|..||+
T Consensus       389 dk~v~lW~--~~k~~wt~~-~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAv  464 (626)
T KOG2106|consen  389 DKHVRLWN--DHKLEWTKI-IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAV  464 (626)
T ss_pred             cceEEEcc--CCceeEEEE-ecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEE
Confidence            99999999  556666654 35689999999999 999999999999999999888777777888999999999999999


Q ss_pred             EECCCeEEEEEee
Q 008496          550 CFANHTVCVLDFR  562 (563)
Q Consensus       550 ~~~~~~v~v~~~~  562 (563)
                      |+.|+.|.||-+.
T Consensus       465 gs~d~~iyiy~Vs  477 (626)
T KOG2106|consen  465 GSHDNHIYIYRVS  477 (626)
T ss_pred             ecCCCeEEEEEEC
Confidence            9999999998653

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.94  E-value=1.9e-25  Score=215.49  Aligned_cols=290  Identities=24%  Similarity=0.392  Sum_probs=230.6

Q ss_pred             ecCCCceeEecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEE
Q 008496          202 EIPNSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLD  281 (563)
Q Consensus       202 ~~~~~~~~~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~  281 (563)
                      .+|.....+++||++.|.+++..|.|.+||+|+.||++|||.+.++.+.             +++.     -...|.|++
T Consensus       387 PFPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcv-------------r~~~-----~d~~I~~va  448 (733)
T KOG0650|consen  387 PFPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCV-------------RTVQ-----FDSEIRSVA  448 (733)
T ss_pred             CCcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEE-------------EEEe-----ecceeEEEE
Confidence            4566667889999999999999999999999999999999999887642             2221     134699999


Q ss_pred             ECCCCC--EEEEEeCCC--------------------------------eEEEEEcCC-----ceeEeeccCCCCEEEEE
Q 008496          282 WNGEGT--LLATGSYDG--------------------------------QARIWSTNG-----DLKCTLSKHKGPIFSLK  322 (563)
Q Consensus       282 ~s~~g~--~l~sg~~dg--------------------------------~i~vw~~~~-----~~~~~~~~h~~~V~~l~  322 (563)
                      |+|.+.  .||++....                                .+..|....     .-++....|..+|..+.
T Consensus       449 w~P~~~~~vLAvA~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vt  528 (733)
T KOG0650|consen  449 WNPLSDLCVLAVAVGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVT  528 (733)
T ss_pred             ecCCCCceeEEEEecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceee
Confidence            999764  344433322                                223343210     01234456889999999


Q ss_pred             eCCCCCEEEEeeCC---CcEEEEECCCCceeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCc
Q 008496          323 WNKKGDYLLTGSCD---KTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQG  399 (563)
Q Consensus       323 ~~~~~~~l~s~s~D---~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~  399 (563)
                      ||..|.||++...+   ..|.|+++.....+..|....+.+..+.|.+...+....+...|++|++.....++.+.....
T Consensus       529 WHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg~k  608 (733)
T KOG0650|consen  529 WHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTGSK  608 (733)
T ss_pred             eecCCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcCCe
Confidence            99999999987765   578999998777777777778888999998887777777888999999988777777776677


Q ss_pred             ceeEEEECCCCCEEEEEeCCCcEEEEeCCC-CceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeC
Q 008496          400 EVNCVKWDPTGSLLASCSDDVTAKIWNMKQ-DKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDV  478 (563)
Q Consensus       400 ~i~~~~~~~~~~~las~s~dg~i~iwd~~~-~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~  478 (563)
                      .|..++.+|.|.-|+.|+.|+.+..+|+.- .++...++.|...+++++|++.-.         ++++|+.||++.|+.-
T Consensus       609 wiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryP---------Lfas~sdDgtv~Vfhg  679 (733)
T KOG0650|consen  609 WISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYP---------LFASGSDDGTVIVFHG  679 (733)
T ss_pred             eeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccc---------eeeeecCCCcEEEEee
Confidence            899999999999999999999999999874 456788899999999999988653         8999999999999852


Q ss_pred             C------CC---eEEEEecCCCCC----EEEEEEcCCCCEEEEEeCCCcEEEE
Q 008496          479 E------LG---KLLYSLNGHREP----VYSLAFSPTGEYLASGSLDKSMHIW  518 (563)
Q Consensus       479 ~------~~---~~~~~~~~h~~~----i~~l~~spdg~~lasgs~dg~v~iw  518 (563)
                      .      ..   -.+..+.+|...    |..+.|+|.-.||++++.||+|++|
T Consensus       680 ~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf  732 (733)
T KOG0650|consen  680 MVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF  732 (733)
T ss_pred             eeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence            2      11   235667888655    8999999999999999999999998

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=1.3e-24  Score=194.63  Aligned_cols=276  Identities=18%  Similarity=0.287  Sum_probs=199.7

Q ss_pred             cCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCceeE-----eeccCCCCEEEEEeCCCCCEEE-EeeCCCcEEEEECC
Q 008496          272 EKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKC-----TLSKHKGPIFSLKWNKKGDYLL-TGSCDKTAIVWDVK  345 (563)
Q Consensus       272 ~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~~~-----~~~~h~~~V~~l~~~~~~~~l~-s~s~D~~v~iwd~~  345 (563)
                      +|.+.|++++|++||++|+|++.|+.||||++..-...     ...-.-+--+.+.|.||..-++ ++-...++++|-+.
T Consensus        84 gH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~  163 (420)
T KOG2096|consen   84 GHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLV  163 (420)
T ss_pred             ccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEEEee
Confidence            45788999999999999999999999999997642110     0011112347789999987654 55556689999653


Q ss_pred             C---CceeE---------EeeecccCeEEEecCCC-ceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCE
Q 008496          346 T---EEWKQ---------QFEFHSGPTLDVDWRNN-VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSL  412 (563)
Q Consensus       346 ~---~~~~~---------~~~~~~~~~~~~~~~~~-~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~  412 (563)
                      .   |....         .-..|..+++++...++ ..+++++.|..|.+|++. ++.+..+......-...+.+|+|++
T Consensus       164 K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRF  242 (420)
T KOG2096|consen  164 KKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRF  242 (420)
T ss_pred             ecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCCCCcE
Confidence            2   11111         11123445666655554 456788999999999998 6666666655555566889999999


Q ss_pred             EEEEeCCCcEEEEeCC---CC-----ceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC---
Q 008496          413 LASCSDDVTAKIWNMK---QD-----KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG---  481 (563)
Q Consensus       413 las~s~dg~i~iwd~~---~~-----~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~---  481 (563)
                      ||+++..--+++|..-   .+     ..+..+++|...|..++|+|+..         .+++.|.||++||||+.-.   
T Consensus       243 ia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~---------r~vtvSkDG~wriwdtdVrY~~  313 (420)
T KOG2096|consen  243 IAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSST---------RAVTVSKDGKWRIWDTDVRYEA  313 (420)
T ss_pred             EEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcc---------eeEEEecCCcEEEeeccceEec
Confidence            9999998899999752   22     23567889999999999999864         6899999999999997531   


Q ss_pred             -eEEEEec-------C-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEec--CCCEEEEEEcCCCCEEEEE
Q 008496          482 -KLLYSLN-------G-HREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTG--NGGIFEVCWNKEGDKIAAC  550 (563)
Q Consensus       482 -~~~~~~~-------~-h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~--~~~i~~l~w~~~g~~la~~  550 (563)
                       +-.+.++       . -..|+ .++.||+|+.||... ...+++|..++|+....+..  .+.|.+++|+++|+++|+|
T Consensus       314 ~qDpk~Lk~g~~pl~aag~~p~-RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atc  391 (420)
T KOG2096|consen  314 GQDPKILKEGSAPLHAAGSEPV-RLELSPSGDSLAVSF-GSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATC  391 (420)
T ss_pred             CCCchHhhcCCcchhhcCCCce-EEEeCCCCcEEEeec-CCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeee
Confidence             1111111       1 12344 899999999998654 44699999999987666543  4679999999999999999


Q ss_pred             ECCCeEEEEE
Q 008496          551 FANHTVCVLD  560 (563)
Q Consensus       551 ~~~~~v~v~~  560 (563)
                       +|..+.|+.
T Consensus       392 -Gdr~vrv~~  400 (420)
T KOG2096|consen  392 -GDRYVRVIR  400 (420)
T ss_pred             -cceeeeeec
Confidence             466777763

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.94  E-value=2.6e-23  Score=203.59  Aligned_cols=286  Identities=14%  Similarity=0.124  Sum_probs=205.0

Q ss_pred             CCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEE-EEEeCCCeEEEEEcCC
Q 008496          227 GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLL-ATGSYDGQARIWSTNG  305 (563)
Q Consensus       227 ~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l-~sg~~dg~i~vw~~~~  305 (563)
                      +.+++|++.|+.+++||+.++..             ...+..     ...+.+++|+|+|..+ ++++.++.|++|+...
T Consensus         1 ~~~~~s~~~d~~v~~~d~~t~~~-------------~~~~~~-----~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~   62 (300)
T TIGR03866         1 EKAYVSNEKDNTISVIDTATLEV-------------TRTFPV-----GQRPRGITLSKDGKLLYVCASDSDTIQVIDLAT   62 (300)
T ss_pred             CcEEEEecCCCEEEEEECCCCce-------------EEEEEC-----CCCCCceEECCCCCEEEEEECCCCeEEEEECCC
Confidence            35788999999999999875431             111111     1235679999999876 5677889999999764


Q ss_pred             -ceeEeeccCCCCEEEEEeCCCCCEEEEe-eCCCcEEEEECCCCceeEEeeecccCeEEEecCCCc-eEEEEeCCC-eEE
Q 008496          306 -DLKCTLSKHKGPIFSLKWNKKGDYLLTG-SCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNV-SFATSSTDN-MIY  381 (563)
Q Consensus       306 -~~~~~~~~h~~~V~~l~~~~~~~~l~s~-s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~-~i~  381 (563)
                       .....+..+.. +..+.|+|+++.++++ +.|+.+++||+.+...+..+... ..+..+.|.++. .++++..++ .++
T Consensus        63 ~~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~~~  140 (300)
T TIGR03866        63 GEVIGTLPSGPD-PELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVG-VEPEGMAVSPDGKIVVNTSETTNMAH  140 (300)
T ss_pred             CcEEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCC-CCcceEEECCCCCEEEEEecCCCeEE
Confidence             44444554444 4678999999977654 56899999999988766665432 234556675544 455555443 567


Q ss_pred             EEEcCCCcceeeecCCCcceeEEEECCCCCEEE-EEeCCCcEEEEeCCCCceeeeecccCC-------CEEEEEEccCCC
Q 008496          382 VCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLA-SCSDDVTAKIWNMKQDKYVHDLREHSK-------EIYTIRWSPTGS  453 (563)
Q Consensus       382 ~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~la-s~s~dg~i~iwd~~~~~~~~~~~~~~~-------~i~~~~~~p~~~  453 (563)
                      .|+......+..+.. ...+.+++|+|++++|+ ++..++.|++||+.+++.+..+..+..       ....++|+|++.
T Consensus       141 ~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~  219 (300)
T TIGR03866       141 FIDTKTYEIVDNVLV-DQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGK  219 (300)
T ss_pred             EEeCCCCeEEEEEEc-CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCC
Confidence            778876655444332 23457899999999875 455699999999998877665542211       224577888764


Q ss_pred             CCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEE-eCCCcEEEEecCCCeeEEEEecC
Q 008496          454 GTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASG-SLDKSMHIWSLKEGKIVKTYTGN  532 (563)
Q Consensus       454 ~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasg-s~dg~v~iw~~~~~~~~~~~~~~  532 (563)
                              .++++.+.++.|.+||+++++.+..+. +...+.+++|+|+|++|+++ +.++.|.|||+.+++++..+...
T Consensus       220 --------~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~  290 (300)
T TIGR03866       220 --------TAFVALGPANRVAVVDAKTYEVLDYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVG  290 (300)
T ss_pred             --------EEEEEcCCCCeEEEEECCCCcEEEEEE-eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcc
Confidence                    344555567789999999888776553 34578999999999999876 46899999999999999998877


Q ss_pred             CCEEEEEEcC
Q 008496          533 GGIFEVCWNK  542 (563)
Q Consensus       533 ~~i~~l~w~~  542 (563)
                      ...++++++|
T Consensus       291 ~~~~~~~~~~  300 (300)
T TIGR03866       291 RLPWGVVVRP  300 (300)
T ss_pred             cccceeEeCC
Confidence            7788888765

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.94  E-value=2.4e-25  Score=218.42  Aligned_cols=285  Identities=23%  Similarity=0.358  Sum_probs=222.9

Q ss_pred             EEEEeeCCCcEEEEecCCCCCcCCCCCCCceE------E------EEE--------eeecccccCCCCeEEEEECCCCCE
Q 008496          229 LLASGSGDSTARIWTIADGTSNGGAQNGPLNV------L------VLK--------HVKGRTNEKSKDVTTLDWNGEGTL  288 (563)
Q Consensus       229 ~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~------~------~~~--------~~~~~~~~~~~~V~~l~~s~~g~~  288 (563)
                      -+.|++.|++||+|++..+..+......++..      +      .+.        ......-.....|.+++.||+|++
T Consensus       394 cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqh  473 (1080)
T KOG1408|consen  394 CFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQH  473 (1080)
T ss_pred             ceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcce
Confidence            48899999999999997633221111110000      0      000        000001122346999999999999


Q ss_pred             EEEEeCCCeEEEEEcCC-ceeEeeccCCCCEEEEEeCC---CCCEEEEeeCCCcEEEEECC-CCceeEEeeecccCeEEE
Q 008496          289 LATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNK---KGDYLLTGSCDKTAIVWDVK-TEEWKQQFEFHSGPTLDV  363 (563)
Q Consensus       289 l~sg~~dg~i~vw~~~~-~~~~~~~~h~~~V~~l~~~~---~~~~l~s~s~D~~v~iwd~~-~~~~~~~~~~~~~~~~~~  363 (563)
                      ||+|..-|++|||++.. ...+.+..|.+.|.+|.|+.   ..+.|++++.|+-|.|+|+. .-.+++++..|...+..+
T Consensus       474 LAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsv  553 (1080)
T KOG1408|consen  474 LASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSV  553 (1080)
T ss_pred             ecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEE
Confidence            99999999999999864 45667889999999999985   23678999999999999985 456777888999999998


Q ss_pred             ecCC---CceEEEEeCCCeEEEEEcCCCcceeeecCCC-----cceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeee
Q 008496          364 DWRN---NVSFATSSTDNMIYVCKIGENRPIKTFAGHQ-----GEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHD  435 (563)
Q Consensus       364 ~~~~---~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~-----~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~  435 (563)
                      .|..   +...++|+.|..|++-..........|..|.     ..+..++..|..+++++++.|..|+||++.+++.+..
T Consensus       554 KFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~  633 (1080)
T KOG1408|consen  554 KFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKS  633 (1080)
T ss_pred             EEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeee
Confidence            8853   3577899999887654333222233343332     3577899999999999999999999999999999998


Q ss_pred             ecc---cCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCC
Q 008496          436 LRE---HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLD  512 (563)
Q Consensus       436 ~~~---~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~d  512 (563)
                      |++   |.+....+...|.|.         +||+...|.++.++|..+|+|+..+.||...|+.+.|++|.+.|++.+.|
T Consensus       634 FKgs~~~eG~lIKv~lDPSgi---------Y~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgD  704 (1080)
T KOG1408|consen  634 FKGSRDHEGDLIKVILDPSGI---------YLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGD  704 (1080)
T ss_pred             ecccccCCCceEEEEECCCcc---------EEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCC
Confidence            874   667788888888774         89999999999999999999999999999999999999999999999999


Q ss_pred             CcEEEEecCC
Q 008496          513 KSMHIWSLKE  522 (563)
Q Consensus       513 g~v~iw~~~~  522 (563)
                      |.|.||.+..
T Consensus       705 gCIFvW~lp~  714 (1080)
T KOG1408|consen  705 GCIFVWKLPL  714 (1080)
T ss_pred             ceEEEEECch
Confidence            9999999864

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.94  E-value=8.5e-26  Score=214.22  Aligned_cols=250  Identities=23%  Similarity=0.412  Sum_probs=187.9

Q ss_pred             CCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCce------eEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCC
Q 008496          273 KSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDL------KCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKT  346 (563)
Q Consensus       273 ~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~------~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~  346 (563)
                      +++.|+++++.|.|-.|++|+.|-.|++||..|--      ..........|.+++|++.|..|++.+.....+|+|-..
T Consensus       166 gtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG  245 (641)
T KOG0772|consen  166 GTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRDG  245 (641)
T ss_pred             CceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEccCC
Confidence            46789999999999999999999999999987631      122334556899999999999999999999999999655


Q ss_pred             CceeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCC-EEEEEeCCCcEEEE
Q 008496          347 EEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGS-LLASCSDDVTAKIW  425 (563)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~-~las~s~dg~i~iw  425 (563)
                      .++.....                     +|.+|  -++      ..-+||...++|.+|+|+.+ .|+||+.||++|||
T Consensus       246 ~~~~e~~K---------------------GDQYI--~Dm------~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiW  296 (641)
T KOG0772|consen  246 FEIVEFSK---------------------GDQYI--RDM------YNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIW  296 (641)
T ss_pred             ceeeeeec---------------------cchhh--hhh------hccCCceeeeeccccccCcccceEEecCCCcEEEE
Confidence            44333211                     12222  121      23468999999999999764 68899999999999


Q ss_pred             eCCCCce-eeeec-----ccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeE---EEEecCCCC--CE
Q 008496          426 NMKQDKY-VHDLR-----EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKL---LYSLNGHRE--PV  494 (563)
Q Consensus       426 d~~~~~~-~~~~~-----~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~---~~~~~~h~~--~i  494 (563)
                      |++..+. ...++     +..-++++++|+|++.         ++|+|..||+|.+|+......   .+.-.+|..  .|
T Consensus       297 dv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~---------~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~I  367 (641)
T KOG0772|consen  297 DVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGK---------LIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDI  367 (641)
T ss_pred             ecCCchhheeEEeeccCCCcccCceeeecCCCcc---------hhhhcccCCceeeeecCCcccccceEeeeccCCCCce
Confidence            9875442 22222     1223578999999986         689999999999999754322   233456766  89


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEecCCCe-eEEEEec---CCCEEEEEEcCCCCEEEEEEC------CCeEEEEE
Q 008496          495 YSLAFSPTGEYLASGSLDKSMHIWSLKEGK-IVKTYTG---NGGIFEVCWNKEGDKIAACFA------NHTVCVLD  560 (563)
Q Consensus       495 ~~l~~spdg~~lasgs~dg~v~iw~~~~~~-~~~~~~~---~~~i~~l~w~~~g~~la~~~~------~~~v~v~~  560 (563)
                      +||+||+||++|++-|.|+++++||++.-+ .+..+.+   .-.-++++|||+.+.|.+|.+      -|.+++||
T Consensus       368 tsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d  443 (641)
T KOG0772|consen  368 TSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFD  443 (641)
T ss_pred             eEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEe
Confidence            999999999999999999999999998754 4444433   123468899999999998854      24566665

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=2.5e-24  Score=192.81  Aligned_cols=260  Identities=17%  Similarity=0.350  Sum_probs=207.1

Q ss_pred             EEEEeCCCeEEEEEcCCc-------------eeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeee
Q 008496          289 LATGSYDGQARIWSTNGD-------------LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEF  355 (563)
Q Consensus       289 l~sg~~dg~i~vw~~~~~-------------~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~  355 (563)
                      |++|++...|.-+++.-.             ....+..|.++|++++.+  +.++++||.|-+|+|||+++......+..
T Consensus         4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~   81 (362)
T KOG0294|consen    4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLS   81 (362)
T ss_pred             EEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceec
Confidence            567777776666654211             123467899999999874  78999999999999999999888888888


Q ss_pred             cccCeEEEecCCCc---eEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCce
Q 008496          356 HSGPTLDVDWRNNV---SFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKY  432 (563)
Q Consensus       356 ~~~~~~~~~~~~~~---~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~  432 (563)
                      |.+.+.++.+....   .+++++.||.|.+|+.+.-..+.++++|.+.|+.++++|.+++-++.+.|+.+++||+-+++.
T Consensus        82 HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~  161 (362)
T KOG0294|consen   82 HAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRV  161 (362)
T ss_pred             cccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCcc
Confidence            99999998887655   799999999999999999999999999999999999999999999999999999999988775


Q ss_pred             eeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCC
Q 008496          433 VHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLD  512 (563)
Q Consensus       433 ~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~d  512 (563)
                      ...+.- ...-+.+.|+|.|.         .++.++. ..|-||.+.+......+... ..+.++-|- ++.+|++|+.|
T Consensus       162 a~v~~L-~~~at~v~w~~~Gd---------~F~v~~~-~~i~i~q~d~A~v~~~i~~~-~r~l~~~~l-~~~~L~vG~d~  228 (362)
T KOG0294|consen  162 AFVLNL-KNKATLVSWSPQGD---------HFVVSGR-NKIDIYQLDNASVFREIENP-KRILCATFL-DGSELLVGGDN  228 (362)
T ss_pred             ceeecc-CCcceeeEEcCCCC---------EEEEEec-cEEEEEecccHhHhhhhhcc-ccceeeeec-CCceEEEecCC
Confidence            443332 12234499999875         3444443 46889988876655444322 346677764 56789999999


Q ss_pred             CcEEEEecCCCeeEEEEecC-CCEEEEE--EcCCCCEEEEEECCCeEEEEEeeC
Q 008496          513 KSMHIWSLKEGKIVKTYTGN-GGIFEVC--WNKEGDKIAACFANHTVCVLDFRM  563 (563)
Q Consensus       513 g~v~iw~~~~~~~~~~~~~~-~~i~~l~--w~~~g~~la~~~~~~~v~v~~~~~  563 (563)
                      +.|.+||..+..++..+.++ ..|-++.  =+|++.+|+++++||.|+|||++|
T Consensus       229 ~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~  282 (362)
T KOG0294|consen  229 EWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDM  282 (362)
T ss_pred             ceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEccc
Confidence            99999999988888777664 3465555  367899999999999999999986

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=1e-24  Score=220.51  Aligned_cols=241  Identities=21%  Similarity=0.359  Sum_probs=204.6

Q ss_pred             ccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCC-ceeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcc
Q 008496          312 SKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTE-EWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRP  390 (563)
Q Consensus       312 ~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~  390 (563)
                      ..|+..-+.|+|.|+|.+|++|+.||.|++|+.... +-...+..+...+..+.... ..|++++.+++|.+|.......
T Consensus        10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s-~~f~~~s~~~tv~~y~fps~~~   88 (933)
T KOG1274|consen   10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYS-NHFLTGSEQNTVLRYKFPSGEE   88 (933)
T ss_pred             hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeecc-cceEEeeccceEEEeeCCCCCc
Confidence            368888999999999999999999999999987554 33333333455555554433 3899999999999999988776


Q ss_pred             eeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCC
Q 008496          391 IKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFD  470 (563)
Q Consensus       391 ~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~d  470 (563)
                      -..+...+-++++++++-+|+++|.||+|-.|++-++........+++|.++|.++.|.|.+.         +||+.+.|
T Consensus        89 ~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~---------fLAvss~d  159 (933)
T KOG1274|consen   89 DTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGN---------FLAVSSCD  159 (933)
T ss_pred             cceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCC---------EEEEEecC
Confidence            555555667899999999999999999999999999999888899999999999999999875         89999999


Q ss_pred             CeEEEEeCCCCeEEEEecCC--------CCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEecC---CCEEEEE
Q 008496          471 STVKLWDVELGKLLYSLNGH--------REPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGN---GGIFEVC  539 (563)
Q Consensus       471 g~i~iwd~~~~~~~~~~~~h--------~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~~---~~i~~l~  539 (563)
                      |.|+|||+.++.+..++.+-        ...+..++|+|+|..+|..+.|+.|++|+..++.....+..+   ..+..++
T Consensus       160 G~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~  239 (933)
T KOG1274|consen  160 GKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQ  239 (933)
T ss_pred             ceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEE
Confidence            99999999999887776532        345778999999888888888999999999999888777543   3488999


Q ss_pred             EcCCCCEEEEEECCCeEEEEEee
Q 008496          540 WNKEGDKIAACFANHTVCVLDFR  562 (563)
Q Consensus       540 w~~~g~~la~~~~~~~v~v~~~~  562 (563)
                      |+|.|++||+++.||.|.|||++
T Consensus       240 wsPnG~YiAAs~~~g~I~vWnv~  262 (933)
T KOG1274|consen  240 WSPNGKYIAASTLDGQILVWNVD  262 (933)
T ss_pred             EcCCCcEEeeeccCCcEEEEecc
Confidence            99999999999999999999986

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=1.5e-25  Score=218.35  Aligned_cols=231  Identities=24%  Similarity=0.441  Sum_probs=198.4

Q ss_pred             CCCCEEEEEeCCCeEEEEEcCCc-------eeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeec
Q 008496          284 GEGTLLATGSYDGQARIWSTNGD-------LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFH  356 (563)
Q Consensus       284 ~~g~~l~sg~~dg~i~vw~~~~~-------~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~  356 (563)
                      |.+++|+|||.||.|++|+....       ....+..|..-|..+....+++.|+++|.|-+|++|+...+.        
T Consensus        35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~--------  106 (735)
T KOG0308|consen   35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDN--------  106 (735)
T ss_pred             CCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCc--------
Confidence            46788999999999999986421       244677899999999888899999999999999999976431        


Q ss_pred             ccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEE-CCCCCEEEEEeCCCcEEEEeCCCCc--ee
Q 008496          357 SGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKW-DPTGSLLASCSDDVTAKIWNMKQDK--YV  433 (563)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~-~~~~~~las~s~dg~i~iwd~~~~~--~~  433 (563)
                                                     ..++.++..|...|.|+++ -++..++|||+-|+.|.+||++++.  .+
T Consensus       107 -------------------------------~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~  155 (735)
T KOG0308|consen  107 -------------------------------TFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLV  155 (735)
T ss_pred             -------------------------------chhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhh
Confidence                                           0123456779999999999 8889999999999999999998762  22


Q ss_pred             --------eeec-ccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCC
Q 008496          434 --------HDLR-EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGE  504 (563)
Q Consensus       434 --------~~~~-~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~  504 (563)
                              ..+. ++...||+++-.+.|.         ++++|+..+.|++||.++++.+..+.||...|.++..++||+
T Consensus       156 ~s~n~~t~~sl~sG~k~siYSLA~N~t~t---------~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt  226 (735)
T KOG0308|consen  156 ASFNNVTVNSLGSGPKDSIYSLAMNQTGT---------IIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGT  226 (735)
T ss_pred             hhccccccccCCCCCccceeeeecCCcce---------EEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCC
Confidence                    2233 6778899999888774         899999999999999999999999999999999999999999


Q ss_pred             EEEEEeCCCcEEEEecCCCeeEEEEecC-CCEEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496          505 YLASGSLDKSMHIWSLKEGKIVKTYTGN-GGIFEVCWNKEGDKIAACFANHTVCVLDFR  562 (563)
Q Consensus       505 ~lasgs~dg~v~iw~~~~~~~~~~~~~~-~~i~~l~w~~~g~~la~~~~~~~v~v~~~~  562 (563)
                      .+++||.||+|++||+...+++.++..+ .+++++.-+|+=+++.+|..++.|..=|+|
T Consensus       227 ~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~  285 (735)
T KOG0308|consen  227 RLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLR  285 (735)
T ss_pred             eEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccC
Confidence            9999999999999999999999998753 568999999999999999999988776665

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.93  E-value=7.8e-23  Score=200.14  Aligned_cols=265  Identities=14%  Similarity=0.156  Sum_probs=199.2

Q ss_pred             CCEEEEEeCCCeEEEEEcC-CceeEeeccCCCCEEEEEeCCCCCEE-EEeeCCCcEEEEECCCCceeEEeeecccCeEEE
Q 008496          286 GTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYL-LTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDV  363 (563)
Q Consensus       286 g~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l-~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~  363 (563)
                      +.++++++.|+.+++|+.. +.....+..+.. +.++.|+|++..+ ++++.++.|++||+.+++....+..+.. +..+
T Consensus         1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~   78 (300)
T TIGR03866         1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELF   78 (300)
T ss_pred             CcEEEEecCCCEEEEEECCCCceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEE
Confidence            3578899999999999975 455566665544 5789999999876 5677889999999999887766654433 3345


Q ss_pred             ecCCCc--eEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCC-cEEEEeCCCCceeeeecccC
Q 008496          364 DWRNNV--SFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDV-TAKIWNMKQDKYVHDLREHS  440 (563)
Q Consensus       364 ~~~~~~--~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg-~i~iwd~~~~~~~~~~~~~~  440 (563)
                      .|.++.  .+++++.++.+++|++...+.+..+.. ...+.+++|+|+++++++++.++ .+.+||..++.....+.. .
T Consensus        79 ~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~-~  156 (300)
T TIGR03866        79 ALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLV-D  156 (300)
T ss_pred             EECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEc-C
Confidence            565443  345556789999999988777766653 23467899999999999988875 467789888776554432 2


Q ss_pred             CCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCC-----C--CEEEEEEcCCCCEEEE-EeCC
Q 008496          441 KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHR-----E--PVYSLAFSPTGEYLAS-GSLD  512 (563)
Q Consensus       441 ~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~-----~--~i~~l~~spdg~~las-gs~d  512 (563)
                      .....+.|+|++.        .+++++..++.|++||+.+++.+..+..+.     .  ....++|+|+|+++++ .+.+
T Consensus       157 ~~~~~~~~s~dg~--------~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~  228 (300)
T TIGR03866       157 QRPRFAEFTADGK--------ELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPA  228 (300)
T ss_pred             CCccEEEECCCCC--------EEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCC
Confidence            3456788988875        345666679999999999988776654221     1  2346899999998654 4556


Q ss_pred             CcEEEEecCCCeeEEEEecCCCEEEEEEcCCCCEEEEE-ECCCeEEEEEee
Q 008496          513 KSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAAC-FANHTVCVLDFR  562 (563)
Q Consensus       513 g~v~iw~~~~~~~~~~~~~~~~i~~l~w~~~g~~la~~-~~~~~v~v~~~~  562 (563)
                      +.|.+||+.+++++........+.+++|+|+|++|+++ ..++.|.|||++
T Consensus       229 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~  279 (300)
T TIGR03866       229 NRVAVVDAKTYEVLDYLLVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVA  279 (300)
T ss_pred             CeEEEEECCCCcEEEEEEeCCCcceEEECCCCCEEEEEcCCCCeEEEEECC
Confidence            78999999999888766555678999999999999876 458899999986

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.93  E-value=6e-26  Score=223.48  Aligned_cols=257  Identities=26%  Similarity=0.441  Sum_probs=221.4

Q ss_pred             CCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcC
Q 008496          225 PAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTN  304 (563)
Q Consensus       225 p~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~  304 (563)
                      |.+..++.+..+..+++|+....                       ..|+..|.++..-..++.+++|+.|..+-+|...
T Consensus         2 ~~~~~~m~~~~~t~Lr~~~~~~~-----------------------~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~   58 (825)
T KOG0267|consen    2 PGMEFLMKTKRATKLRVWDTREF-----------------------VAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIG   58 (825)
T ss_pred             Ccccccceeeeeeccccccchhh-----------------------hhhhhhhceeeeeccceeeccCCCceeecccccc
Confidence            33445566666777888886421                       1234456666665677899999999999999865


Q ss_pred             C-ceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecCCCce-EEEEeCCCeEEE
Q 008496          305 G-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVS-FATSSTDNMIYV  382 (563)
Q Consensus       305 ~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~i~~  382 (563)
                      . .....+.+|.++|-+|.|++....|++|+.+|+|++||+...+.++.+.+|..++..++|.+... ++.++.|..+.+
T Consensus        59 kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~i  138 (825)
T KOG0267|consen   59 KPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKI  138 (825)
T ss_pred             CCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEecccccccccee
Confidence            3 23446899999999999999999999999999999999999999999999999999999987654 477889999999


Q ss_pred             EEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcE
Q 008496          383 CKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQL  462 (563)
Q Consensus       383 ~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~  462 (563)
                      ||++...++..+.+|...+.++.|+|+|+++++|++|.+++|||...++...+|..|.+.+.++.|+|..         .
T Consensus       139 wD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e---------~  209 (825)
T KOG0267|consen  139 WDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLE---------V  209 (825)
T ss_pred             hhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccccccccccccccccccccccCchh---------h
Confidence            9999999999999999999999999999999999999999999999999999999999999999998865         4


Q ss_pred             EEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCC
Q 008496          463 ILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDK  513 (563)
Q Consensus       463 ~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg  513 (563)
                      ++++||.|++|++||+++-..+-........|.+++|+|+|..+++|-...
T Consensus       210 Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~s  260 (825)
T KOG0267|consen  210 LLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQIS  260 (825)
T ss_pred             hhccCCCCceeeeeccceeEEeeccCCccCCceeeeecCCceeeecCchhh
Confidence            899999999999999998888888877788999999999999998876654

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.93  E-value=5.6e-24  Score=206.32  Aligned_cols=152  Identities=28%  Similarity=0.551  Sum_probs=122.5

Q ss_pred             eeEEEECC-CCCEEEEEeCCCcEEEEeCCCC-------ceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCe
Q 008496          401 VNCVKWDP-TGSLLASCSDDVTAKIWNMKQD-------KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDST  472 (563)
Q Consensus       401 i~~~~~~~-~~~~las~s~dg~i~iwd~~~~-------~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~  472 (563)
                      |+.+.|+| |...||.+++||.|++|.+..+       .+...+..|...|+++.|+|-..        .+|++++.|-+
T Consensus       630 vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAa--------dvLa~asyd~T  701 (1012)
T KOG1445|consen  630 VTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAA--------DVLAVASYDST  701 (1012)
T ss_pred             eeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhh--------hHhhhhhccce
Confidence            56778888 5567999999999999998643       23456788999999999999754        27999999999


Q ss_pred             EEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEecCCCE----EEEEEcCCCCEEE
Q 008496          473 VKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGI----FEVCWNKEGDKIA  548 (563)
Q Consensus       473 i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~~~~i----~~l~w~~~g~~la  548 (563)
                      |+|||+++++....+.+|.+.|..++|||||+.+|+.+.||+|++|+.+.+.. ..+.+++.+    --+.|--||.+++
T Consensus       702 i~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~-pv~Eg~gpvgtRgARi~wacdgr~vi  780 (1012)
T KOG1445|consen  702 IELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQ-PVYEGKGPVGTRGARILWACDGRIVI  780 (1012)
T ss_pred             eeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCC-ccccCCCCccCcceeEEEEecCcEEE
Confidence            99999999999999999999999999999999999999999999999987642 223343332    3588999999777


Q ss_pred             EEECCC----eEEEEEe
Q 008496          549 ACFANH----TVCVLDF  561 (563)
Q Consensus       549 ~~~~~~----~v~v~~~  561 (563)
                      +.+.|+    .|.+||.
T Consensus       781 v~Gfdk~SeRQv~~Y~A  797 (1012)
T KOG1445|consen  781 VVGFDKSSERQVQMYDA  797 (1012)
T ss_pred             Eecccccchhhhhhhhh
Confidence            655443    3445543

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=1.7e-23  Score=196.32  Aligned_cols=281  Identities=16%  Similarity=0.246  Sum_probs=221.7

Q ss_pred             cCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCce---eEeeccCCCCEEEEEeCCCCC-EEEEeeCCCcEEEEECCCC
Q 008496          272 EKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDL---KCTLSKHKGPIFSLKWNKKGD-YLLTGSCDKTAIVWDVKTE  347 (563)
Q Consensus       272 ~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~---~~~~~~h~~~V~~l~~~~~~~-~l~s~s~D~~v~iwd~~~~  347 (563)
                      +....|+++.|+|...+|++|+.||.++||.++|+.   +..+.--..||.+.+|.|+|. .+++++.......||+.+.
T Consensus       211 ps~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~a  290 (514)
T KOG2055|consen  211 PSHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETA  290 (514)
T ss_pred             cCcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccc
Confidence            345789999999999999999999999999998864   344555678999999999999 8899999999999999887


Q ss_pred             ceeEEee--ecccC-eEEEec-CCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEE
Q 008496          348 EWKQQFE--FHSGP-TLDVDW-RNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAK  423 (563)
Q Consensus       348 ~~~~~~~--~~~~~-~~~~~~-~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~  423 (563)
                      +..+.-.  .+... +-.+.. .....++..+..|.|++....+...+.+++ -.+.|..++|+.+++.|++++.+|.|.
T Consensus       291 k~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsSdsk~l~~~~~~GeV~  369 (514)
T KOG2055|consen  291 KVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSSDSKELLASGGTGEVY  369 (514)
T ss_pred             ccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEecCCcEEEEEcCCceEE
Confidence            6543211  11111 111111 233466788899999998887777776665 467899999999999999999999999


Q ss_pred             EEeCCCCceeeeecccCC-CEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC------CeEEEEecCCCCCEEE
Q 008496          424 IWNMKQDKYVHDLREHSK-EIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL------GKLLYSLNGHREPVYS  496 (563)
Q Consensus       424 iwd~~~~~~~~~~~~~~~-~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~------~~~~~~~~~h~~~i~~  496 (563)
                      +||++...+++.+....+ .-++++.++++.         +||+||..|.|.|||..+      .+++..+......|++
T Consensus       370 v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~---------ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Its  440 (514)
T KOG2055|consen  370 VWNLRQNSCLHRFVDDGSVHGTSLCISLNGS---------YLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITS  440 (514)
T ss_pred             EEecCCcceEEEEeecCccceeeeeecCCCc---------eEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeee
Confidence            999999998888764322 235566667765         899999999999999653      4567777777788999


Q ss_pred             EEEcCCCCEEEEEeC--CCcEEEEecCCCeeEEEEec----CCCEEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496          497 LAFSPTGEYLASGSL--DKSMHIWSLKEGKIVKTYTG----NGGIFEVCWNKEGDKIAACFANHTVCVLDFR  562 (563)
Q Consensus       497 l~~spdg~~lasgs~--dg~v~iw~~~~~~~~~~~~~----~~~i~~l~w~~~g~~la~~~~~~~v~v~~~~  562 (563)
                      ++|+||++.||.+|.  +..+++-.+..-.+...|+.    -+-+.+|+|+|.|-+||+|-..|.|.+|.+.
T Consensus       441 l~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~  512 (514)
T KOG2055|consen  441 LQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH  512 (514)
T ss_pred             eeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence            999999999998874  56788888877666555543    2458899999999999999999999999763

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=2.9e-23  Score=185.83  Aligned_cols=272  Identities=21%  Similarity=0.358  Sum_probs=210.9

Q ss_pred             eEEEEECCCCCEEEEEeCCCeEEEEEcCC-ceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeee
Q 008496          277 VTTLDWNGEGTLLATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEF  355 (563)
Q Consensus       277 V~~l~~s~~g~~l~sg~~dg~i~vw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~  355 (563)
                      -.|+.|++-|.+||+|..||.|.|||... .....+.+|..||++++|+++|+.|+|+|.|..|++||+..+.+.+.+.+
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf  105 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRF  105 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEc
Confidence            68999999999999999999999999764 34557889999999999999999999999999999999999998887776


Q ss_pred             cccCeEEEecCC--CceEEEEeCCCeEEEEEcCCCcceeeecC--CC----cceeEEEECCCCCEEEEEeCCCcEEEEeC
Q 008496          356 HSGPTLDVDWRN--NVSFATSSTDNMIYVCKIGENRPIKTFAG--HQ----GEVNCVKWDPTGSLLASCSDDVTAKIWNM  427 (563)
Q Consensus       356 ~~~~~~~~~~~~--~~~~~~~~~d~~i~~~~~~~~~~~~~~~~--h~----~~i~~~~~~~~~~~las~s~dg~i~iwd~  427 (563)
                      . .|+....|.+  ...++++-.+..-.+.++...  +..+-.  ..    ....+..|++.|+++.+|...|.+.++|.
T Consensus       106 ~-spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~--~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a  182 (405)
T KOG1273|consen  106 D-SPVWGAQWHPRKRNKCVATIMEESPVVIDFSDP--KHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDA  182 (405)
T ss_pred             c-CccceeeeccccCCeEEEEEecCCcEEEEecCC--ceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEec
Confidence            4 4677777753  445555555555555555442  222211  11    11234568999999999999999999999


Q ss_pred             CCCceeeeecccC-CCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC----C---eE--EEEecC--CCCCEE
Q 008496          428 KQDKYVHDLREHS-KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL----G---KL--LYSLNG--HREPVY  495 (563)
Q Consensus       428 ~~~~~~~~~~~~~-~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~----~---~~--~~~~~~--h~~~i~  495 (563)
                      .+.+++..++--. ..|..+.++..|.         .|+.-+.|..||.|+++.    |   ..  .+.+..  .+.+-.
T Consensus       183 ~t~e~vas~rits~~~IK~I~~s~~g~---------~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk  253 (405)
T KOG1273|consen  183 ETLECVASFRITSVQAIKQIIVSRKGR---------FLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWK  253 (405)
T ss_pred             chheeeeeeeechheeeeEEEEeccCc---------EEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhh
Confidence            9999998887665 7788899988775         678888999999998762    1   11  111111  123457


Q ss_pred             EEEEcCCCCEEEEEeC-CCcEEEEecCCCeeEEEEecCC--CEEEEEEcCCCCEEEEEECCCeEEEEEe
Q 008496          496 SLAFSPTGEYLASGSL-DKSMHIWSLKEGKIVKTYTGNG--GIFEVCWNKEGDKIAACFANHTVCVLDF  561 (563)
Q Consensus       496 ~l~~spdg~~lasgs~-dg~v~iw~~~~~~~~~~~~~~~--~i~~l~w~~~g~~la~~~~~~~v~v~~~  561 (563)
                      +++||.||.|++.|+. ...++||....|.+++.+.+..  ...++.|+|---.++.- ..|.|.||..
T Consensus       254 ~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~  321 (405)
T KOG1273|consen  254 KCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWAV  321 (405)
T ss_pred             heeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec-cCCceEEEEe
Confidence            8899999999987774 4579999999999999998754  46799999998777766 6788999975

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=3e-24  Score=213.16  Aligned_cols=238  Identities=24%  Similarity=0.420  Sum_probs=188.4

Q ss_pred             CEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeee--cc-----cCeEEEecC--CCceEEEEeCCCeEEEEEcCC
Q 008496          317 PIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEF--HS-----GPTLDVDWR--NNVSFATSSTDNMIYVCKIGE  387 (563)
Q Consensus       317 ~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~--~~-----~~~~~~~~~--~~~~~~~~~~d~~i~~~~~~~  387 (563)
                      +..+|..+++-+.++.++. ..++||-+...........  ..     ....++.|.  ....+++++..|.|.+|++..
T Consensus        41 ~~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk  119 (839)
T KOG0269|consen   41 KANAISVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLNK  119 (839)
T ss_pred             ccceEeecCCcceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecCc
Confidence            3445556677777776653 4667776543322211111  11     123466775  346789999999999999987


Q ss_pred             ---CcceeeecCCCcceeEEEECCCC-CEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEE
Q 008496          388 ---NRPIKTFAGHQGEVNCVKWDPTG-SLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLI  463 (563)
Q Consensus       388 ---~~~~~~~~~h~~~i~~~~~~~~~-~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~  463 (563)
                         ++.+..|..|...+++++|++.. .+|+|||.||+|++||++......+++.....|..++|+|...        ..
T Consensus       120 ~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~--------~~  191 (839)
T KOG0269|consen  120 SIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYG--------NK  191 (839)
T ss_pred             cccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCC--------ce
Confidence               66777899999999999999865 5789999999999999999998888998889999999999653        47


Q ss_pred             EEEEeCCCeEEEEeCCCC-eEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCe--eEEEEecCCCEEEEEE
Q 008496          464 LASASFDSTVKLWDVELG-KLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGK--IVKTYTGNGGIFEVCW  540 (563)
Q Consensus       464 l~s~s~dg~i~iwd~~~~-~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~--~~~~~~~~~~i~~l~w  540 (563)
                      ++++...|.+++||++.. ++...+.+|.++|.++.|+|++.||||||.|+.|+||++.+.+  .+.+.....++..|.|
T Consensus       192 F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkW  271 (839)
T KOG0269|consen  192 FASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKW  271 (839)
T ss_pred             EEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeee
Confidence            899999999999999854 5567789999999999999999999999999999999998654  4555666677899999


Q ss_pred             cCCCC-EEEEEEC--CCeEEEEEeeC
Q 008496          541 NKEGD-KIAACFA--NHTVCVLDFRM  563 (563)
Q Consensus       541 ~~~g~-~la~~~~--~~~v~v~~~~~  563 (563)
                      .|+-. +||+|+.  +-.|.|||+|+
T Consensus       272 RP~~~~hLAtcsmv~dtsV~VWDvrR  297 (839)
T KOG0269|consen  272 RPARSYHLATCSMVVDTSVHVWDVRR  297 (839)
T ss_pred             ccCccchhhhhhccccceEEEEeecc
Confidence            99874 7887744  66899999984

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.92  E-value=3.8e-25  Score=217.84  Aligned_cols=251  Identities=26%  Similarity=0.479  Sum_probs=220.8

Q ss_pred             EEEEEeCCCeEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecCC
Q 008496          288 LLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN  367 (563)
Q Consensus       288 ~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~  367 (563)
                      +++.+...-.+++|+..     .+..|...|.+++.-..+..+++|+.|..+-+|.+.....+-.+.+|..++-++.+..
T Consensus         6 ~~m~~~~~t~Lr~~~~~-----~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~   80 (825)
T KOG0267|consen    6 FLMKTKRATKLRVWDTR-----EFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDT   80 (825)
T ss_pred             ccceeeeeeccccccch-----hhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCc
Confidence            34444445567788753     3456888899998877888999999999999998876666667889999999999876


Q ss_pred             C-ceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEEE
Q 008496          368 N-VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTI  446 (563)
Q Consensus       368 ~-~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~  446 (563)
                      . ..+++++.+|+|++||+...+.++++.||...+.+++|+|-+.++|+|+.|+-+++||.+...+.+.+.+|...+..+
T Consensus        81 ~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l  160 (825)
T KOG0267|consen   81 SERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVL  160 (825)
T ss_pred             chhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEE
Confidence            5 456788899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeE
Q 008496          447 RWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIV  526 (563)
Q Consensus       447 ~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~  526 (563)
                      +|+|+|.         ++++|+.|.+++|||...|+.+..+..|...|.++.|+|..-++++||.|++|++||+++-.++
T Consensus       161 ~lsP~Gr---------~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I  231 (825)
T KOG0267|consen  161 RLSPDGR---------WVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVI  231 (825)
T ss_pred             eecCCCc---------eeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEe
Confidence            9999996         8999999999999999999999999999999999999999999999999999999999988777


Q ss_pred             EEEec-CCCEEEEEEcCCCCEEEEEEC
Q 008496          527 KTYTG-NGGIFEVCWNKEGDKIAACFA  552 (563)
Q Consensus       527 ~~~~~-~~~i~~l~w~~~g~~la~~~~  552 (563)
                      ..... ..+|-+++|+|+|+.++.|..
T Consensus       232 ~s~~~~~~~v~~~~fn~~~~~~~~G~q  258 (825)
T KOG0267|consen  232 SSGKPETDGVRSLAFNPDGKIVLSGEQ  258 (825)
T ss_pred             eccCCccCCceeeeecCCceeeecCch
Confidence            66543 356889999999998887744

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.92  E-value=1.8e-21  Score=195.11  Aligned_cols=325  Identities=18%  Similarity=0.326  Sum_probs=241.2

Q ss_pred             ecCCCCceEEEEECCCC--CEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCE
Q 008496          211 LEGHTSEVCACAWSPAG--SLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTL  288 (563)
Q Consensus       211 l~~h~~~V~~~~~sp~~--~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~  288 (563)
                      ++.-.+.|+++ +||..  +.++.|+.+|.+.||++.+++.          ++.++   +    ....||++.-+|-=..
T Consensus       155 ~~~~~~~Ital-~HP~TYLNKIvvGs~~G~lql~Nvrt~K~----------v~~f~---~----~~s~IT~ieqsPaLDV  216 (910)
T KOG1539|consen  155 LKVEGDFITAL-LHPSTYLNKIVVGSSQGRLQLWNVRTGKV----------VYTFQ---E----FFSRITAIEQSPALDV  216 (910)
T ss_pred             eeccCCceeeE-ecchhheeeEEEeecCCcEEEEEeccCcE----------EEEec---c----cccceeEeccCCcceE
Confidence            33333347766 67864  6788999999999999987652          12222   1    2366999999998889


Q ss_pred             EEEEeCCCeEEEEEcC-CceeEeeccCCCCEEEEEeCCCCCEE-EEeeCCCcEEEEECCCCceeEEee-ecccCeEEEec
Q 008496          289 LATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYL-LTGSCDKTAIVWDVKTEEWKQQFE-FHSGPTLDVDW  365 (563)
Q Consensus       289 l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l-~s~s~D~~v~iwd~~~~~~~~~~~-~~~~~~~~~~~  365 (563)
                      ++.|..+|+|.|+++. ++...++..-.+.|+++.|..||+.+ ++|+..|.+.+||+...+.+.... .|.+.+....+
T Consensus       217 VaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~f  296 (910)
T KOG1539|consen  217 VAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATF  296 (910)
T ss_pred             EEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCccccee
Confidence            9999999999999976 56666776556999999999999765 566667999999999888877665 56566655555


Q ss_pred             CC-CceEEEEeCCCeEEEEEcC--CC--cceeeecCCCcceeEEEEC-CCCCEEEEEeCCCcEEEEeCCCCce-------
Q 008496          366 RN-NVSFATSSTDNMIYVCKIG--EN--RPIKTFAGHQGEVNCVKWD-PTGSLLASCSDDVTAKIWNMKQDKY-------  432 (563)
Q Consensus       366 ~~-~~~~~~~~~d~~i~~~~~~--~~--~~~~~~~~h~~~i~~~~~~-~~~~~las~s~dg~i~iwd~~~~~~-------  432 (563)
                      .+ ...+++.+.|+.+++|-.+  .+  +.++.-.||..+..|+.|. .+|.++.+++.|++++.+++.....       
T Consensus       297 l~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~  376 (910)
T KOG1539|consen  297 LPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQL  376 (910)
T ss_pred             cCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhccc
Confidence            44 4566788889887766544  33  3345556899999999987 6788899999999888886521100       


Q ss_pred             ---------------------eee--------------ecccCCC-----------------------------EEEEEE
Q 008496          433 ---------------------VHD--------------LREHSKE-----------------------------IYTIRW  448 (563)
Q Consensus       433 ---------------------~~~--------------~~~~~~~-----------------------------i~~~~~  448 (563)
                                           +..              +..|.+.                             +++++.
T Consensus       377 ~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~v  456 (910)
T KOG1539|consen  377 HNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCV  456 (910)
T ss_pred             ccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEE
Confidence                                 000              0112221                             222222


Q ss_pred             ccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEe---cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCee
Q 008496          449 SPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSL---NGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKI  525 (563)
Q Consensus       449 ~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~---~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~  525 (563)
                      ++.|         .+.+.|+..|+|-+|++.+|....++   ..|..+|+.++...-++.+++++.+|.+++||..+..+
T Consensus       457 s~CG---------NF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l  527 (910)
T KOG1539|consen  457 SFCG---------NFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVL  527 (910)
T ss_pred             eccC---------ceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcce
Confidence            2222         14566888999999999999998888   47999999999998899999999999999999987664


Q ss_pred             EEEEe-----------------------------------------c-CCCEEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496          526 VKTYT-----------------------------------------G-NGGIFEVCWNKEGDKIAACFANHTVCVLDFR  562 (563)
Q Consensus       526 ~~~~~-----------------------------------------~-~~~i~~l~w~~~g~~la~~~~~~~v~v~~~~  562 (563)
                      +..+.                                         + ...|++++|||||++|++++.|++|++||+-
T Consensus       528 ~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlp  606 (910)
T KOG1539|consen  528 KKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLP  606 (910)
T ss_pred             eeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEecc
Confidence            43331                                         1 2458999999999999999999999999973

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=2.4e-21  Score=190.28  Aligned_cols=324  Identities=20%  Similarity=0.289  Sum_probs=230.8

Q ss_pred             eEecCCC-CceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCC
Q 008496          209 TILEGHT-SEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT  287 (563)
Q Consensus       209 ~~l~~h~-~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~  287 (563)
                      .++.||. ..|.+++|. ++..|++.+.+|.|.-||+.+....             +    ......+.|++++.+|.+.
T Consensus        62 ~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~lk~~-------------~----~~d~~gg~IWsiai~p~~~  123 (691)
T KOG2048|consen   62 PVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHTLKQK-------------Y----NIDSNGGAIWSIAINPENT  123 (691)
T ss_pred             EEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEecccCcee-------------E----EecCCCcceeEEEeCCccc
Confidence            4555654 679999999 5566788889999999999765421             0    1123357899999999999


Q ss_pred             EEEEEeCCCeEEEEEcCCcee---EeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeec-----c-c
Q 008496          288 LLATGSYDGQARIWSTNGDLK---CTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFH-----S-G  358 (563)
Q Consensus       288 ~l~sg~~dg~i~vw~~~~~~~---~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~-----~-~  358 (563)
                      .++.|+.||.+...+...+..   ..|...++.|.+++|+|++..+++|+.||.|++||+..+.........     . .
T Consensus       124 ~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~  203 (691)
T KOG2048|consen  124 ILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKRE  203 (691)
T ss_pred             eEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCC
Confidence            999999999877777664432   356677899999999999999999999999999999888765522221     1 1


Q ss_pred             --CeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCce--e-
Q 008496          359 --PTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKY--V-  433 (563)
Q Consensus       359 --~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~--~-  433 (563)
                        -+..+-+..+..++++..-|+|.+||-..+..++.+..|.+.|.|++..+++..+++++-|+.|..|...+.+.  + 
T Consensus       204 ~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~  283 (691)
T KOG2048|consen  204 PTIVWSVLFLRDSTIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVI  283 (691)
T ss_pred             ceEEEEEEEeecCcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceee
Confidence              23445556778899999999999999999999999999999999999999999999999999998888765532  1 


Q ss_pred             -eeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEE--------------------------------------
Q 008496          434 -HDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVK--------------------------------------  474 (563)
Q Consensus       434 -~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~--------------------------------------  474 (563)
                       .....|...+.+++..++           .|.+|+.|.++.                                      
T Consensus       284 ~~~r~~h~hdvrs~av~~~-----------~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v~~a~~~~L~~~w~~  352 (691)
T KOG2048|consen  284 NSRRDLHAHDVRSMAVIEN-----------ALISGGRDFTLAICSSREFKNMDHRQKNLFPASDRVSVAPENRLLVLWKA  352 (691)
T ss_pred             eccccCCcccceeeeeecc-----------eEEecceeeEEEEccccccCchhhhccccccccceeecCccceEEEEecc
Confidence             222356666666665543           233333333333                                      


Q ss_pred             ----EEeCCCC--------eEEEE-ecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCC------------------
Q 008496          475 ----LWDVELG--------KLLYS-LNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEG------------------  523 (563)
Q Consensus       475 ----iwd~~~~--------~~~~~-~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~------------------  523 (563)
                          +|.+.+.        ..+.. .......|.+.+.||||++||.+.-. +++||.+..-                  
T Consensus       353 h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~~-~~~iy~L~~~~~vk~~~v~~~~~~~~~a  431 (691)
T KOG2048|consen  353 HGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISPDGNLIAISTVS-RTKIYRLQPDPNVKVINVDDVPLALLDA  431 (691)
T ss_pred             ccccceeccCcccccccChhhheeeecCCccceeeeccCCCCCEEEEeecc-ceEEEEeccCcceeEEEeccchhhhccc
Confidence                3322221        00111 11123468999999999999987622 2444444320                  


Q ss_pred             -eeEEE------------------Ee----------------cCCCEEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496          524 -KIVKT------------------YT----------------GNGGIFEVCWNKEGDKIAACFANHTVCVLDFR  562 (563)
Q Consensus       524 -~~~~~------------------~~----------------~~~~i~~l~w~~~g~~la~~~~~~~v~v~~~~  562 (563)
                       .++.+                  +.                ....|+.+.-+++|++||+.+..|.|.|||+.
T Consensus       432 ~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~  505 (691)
T KOG2048|consen  432 SAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAISTRGQIFVYNLE  505 (691)
T ss_pred             eeeEEEecCceEEEEecccceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEeccceEEEEEcc
Confidence             00000                  00                12457889999999999999999999999975

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=2.8e-23  Score=195.47  Aligned_cols=229  Identities=21%  Similarity=0.377  Sum_probs=192.5

Q ss_pred             CCCeEEEEECCCCCEEEEEeCCCeEEEEEcC-CceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEE
Q 008496          274 SKDVTTLDWNGEGTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQ  352 (563)
Q Consensus       274 ~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~  352 (563)
                      .++|.+++-+|+|.+|+.|+..|.+++|.+. |.+...+.+|=.+|++++|+.||.+|+|||.||.|.+|++..      
T Consensus        81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~------  154 (476)
T KOG0646|consen   81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTD------  154 (476)
T ss_pred             ccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEe------
Confidence            4679999999999999999999999999975 677788899999999999999999999999999999998632      


Q ss_pred             eeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCC--CCEEEEEeCCCcEEEEeCCCC
Q 008496          353 FEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT--GSLLASCSDDVTAKIWNMKQD  430 (563)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~--~~~las~s~dg~i~iwd~~~~  430 (563)
                                        ++....++        ..+|...|..|.-.|+.+...+-  ...|+|+|.|.++++||+..+
T Consensus       155 ------------------lv~a~~~~--------~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g  208 (476)
T KOG0646|consen  155 ------------------LVSADNDH--------SVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLG  208 (476)
T ss_pred             ------------------ecccccCC--------CccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccc
Confidence                              11111121        35678889999999999887654  467899999999999999999


Q ss_pred             ceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC----------------CeEEEEecCCCC--
Q 008496          431 KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL----------------GKLLYSLNGHRE--  492 (563)
Q Consensus       431 ~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~----------------~~~~~~~~~h~~--  492 (563)
                      ..+.++. ....+.+++..|...         .+..|+.+|.|.+.++..                +..+..+.||..  
T Consensus       209 ~LLlti~-fp~si~av~lDpae~---------~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~  278 (476)
T KOG0646|consen  209 VLLLTIT-FPSSIKAVALDPAER---------VVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENES  278 (476)
T ss_pred             eeeEEEe-cCCcceeEEEccccc---------EEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCc
Confidence            8877664 456789999988764         678899999999987642                234556788988  


Q ss_pred             CEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEe-cCCCEEEEEEcCCC
Q 008496          493 PVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYT-GNGGIFEVCWNKEG  544 (563)
Q Consensus       493 ~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~-~~~~i~~l~w~~~g  544 (563)
                      +|+|++.|-||..|++|+.||.|+|||+...+++++.. ..+.|+.+.++|=-
T Consensus       279 ~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~~  331 (476)
T KOG0646|consen  279 AITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPLE  331 (476)
T ss_pred             ceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeeccc
Confidence            99999999999999999999999999999999998887 67888888887643

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.91  E-value=7.6e-23  Score=192.12  Aligned_cols=237  Identities=26%  Similarity=0.347  Sum_probs=197.7

Q ss_pred             CCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCceeE-----------------ee--ccCCCCEEEEEeCCCCCEEEEe
Q 008496          273 KSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKC-----------------TL--SKHKGPIFSLKWNKKGDYLLTG  333 (563)
Q Consensus       273 ~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~~~-----------------~~--~~h~~~V~~l~~~~~~~~l~s~  333 (563)
                      |.-+|++|+++|++.+.++++.+|+|.=|+.......                 ..  .+|...|.+++.+++|+||++|
T Consensus       141 H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylatg  220 (479)
T KOG0299|consen  141 HQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLATG  220 (479)
T ss_pred             ccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEec
Confidence            4567999999999999999999999999985421100                 11  2688899999999999999999


Q ss_pred             eCCCcEEEEECCCCceeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEE
Q 008496          334 SCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLL  413 (563)
Q Consensus       334 s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l  413 (563)
                      +.|..|.||+.++.+                                         +++.|.+|.+.|.+++|-....-+
T Consensus       221 g~d~~v~Iw~~~t~e-----------------------------------------hv~~~~ghr~~V~~L~fr~gt~~l  259 (479)
T KOG0299|consen  221 GRDRHVQIWDCDTLE-----------------------------------------HVKVFKGHRGAVSSLAFRKGTSEL  259 (479)
T ss_pred             CCCceEEEecCcccc-----------------------------------------hhhcccccccceeeeeeecCccce
Confidence            999999999987754                                         445678999999999998777788


Q ss_pred             EEEeCCCcEEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCC
Q 008496          414 ASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREP  493 (563)
Q Consensus       414 as~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~  493 (563)
                      .++|.|+++++|++....++.++.+|+..|..|.-..-..         .+..|+.|+++++|++.. .....+.+|.+.
T Consensus       260 ys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~reR---------~vtVGgrDrT~rlwKi~e-esqlifrg~~~s  329 (479)
T KOG0299|consen  260 YSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSRER---------CVTVGGRDRTVRLWKIPE-ESQLIFRGGEGS  329 (479)
T ss_pred             eeeecCCceEEEehhHhHHHHHHhCCccceeeechhcccc---------eEEeccccceeEEEeccc-cceeeeeCCCCC
Confidence            9999999999999999999999999999999887554432         566777999999999953 334456788889


Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEec------C-------CCEEEEEEcCCCCEEEEEECCCeEEEEE
Q 008496          494 VYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTG------N-------GGIFEVCWNKEGDKIAACFANHTVCVLD  560 (563)
Q Consensus       494 i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~------~-------~~i~~l~w~~~g~~la~~~~~~~v~v~~  560 (563)
                      +-|++|=.+ ..+++||.+|.|.+|++.+.+++.+..-      .       ..|++|+--|..+.+|+|+.+|.|++|-
T Consensus       330 idcv~~In~-~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~  408 (479)
T KOG0299|consen  330 IDCVAFIND-EHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWK  408 (479)
T ss_pred             eeeEEEecc-cceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEE
Confidence            999999644 5789999999999999998888777642      1       1578999999999999999999999996


Q ss_pred             e
Q 008496          561 F  561 (563)
Q Consensus       561 ~  561 (563)
                      +
T Consensus       409 i  409 (479)
T KOG0299|consen  409 I  409 (479)
T ss_pred             e
Confidence            4

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.91  E-value=3.1e-23  Score=195.93  Aligned_cols=239  Identities=21%  Similarity=0.334  Sum_probs=192.4

Q ss_pred             CeEEEEECCCCC-EEEEEeCCCeEEEEEcCCcee---EeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeE
Q 008496          276 DVTTLDWNGEGT-LLATGSYDGQARIWSTNGDLK---CTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQ  351 (563)
Q Consensus       276 ~V~~l~~s~~g~-~l~sg~~dg~i~vw~~~~~~~---~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~  351 (563)
                      .+.++.|+.... .+++.+.|..+++|..+|+..   ..-......-+|+.......|+++|+..++|+|||++...   
T Consensus        36 g~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl---  112 (673)
T KOG4378|consen   36 GDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACASQSLYEISGGQSGCVKIWDLRAKL---  112 (673)
T ss_pred             cceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccchHHHHhhhhcceeeeccCcCceeeehhhHHHH---
Confidence            388999998764 333445678999999887621   1111111233555555566899999999999999987432   


Q ss_pred             EeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCc
Q 008496          352 QFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDK  431 (563)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~  431 (563)
                                                            ..+.+.+|+..|+++.++....+||+++..|.|.|-.+.++.
T Consensus       113 --------------------------------------~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~  154 (673)
T KOG4378|consen  113 --------------------------------------IHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQ  154 (673)
T ss_pred             --------------------------------------HhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCc
Confidence                                                  234567899999999999999999999999999999999888


Q ss_pred             eeeeeccc-CCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEe-cCCCCCEEEEEEcCCC-CEEEE
Q 008496          432 YVHDLREH-SKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSL-NGHREPVYSLAFSPTG-EYLAS  508 (563)
Q Consensus       432 ~~~~~~~~-~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~~h~~~i~~l~~spdg-~~las  508 (563)
                      ....|... ...+.-+.|+|..+        .+|.+++.+|.|.+||+.....++.+ ..|..|...|+|+|.. .+||+
T Consensus       155 ~tt~f~~~sgqsvRll~ys~skr--------~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vs  226 (673)
T KOG4378|consen  155 KTTTFTIDSGQSVRLLRYSPSKR--------FLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVS  226 (673)
T ss_pred             cccceecCCCCeEEEeecccccc--------eeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEE
Confidence            77777654 34455788888654        58899999999999999877776654 6799999999999975 67789


Q ss_pred             EeCCCcEEEEecCCCeeEEEEecCCCEEEEEEcCCCCEEEEEECCCeEEEEEeeC
Q 008496          509 GSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLDFRM  563 (563)
Q Consensus       509 gs~dg~v~iw~~~~~~~~~~~~~~~~i~~l~w~~~g~~la~~~~~~~v~v~~~~~  563 (563)
                      .+.|+.|.+||....+....+....+...++|.++|.+|++|..+|.|..||+|+
T Consensus       227 VG~Dkki~~yD~~s~~s~~~l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~  281 (673)
T KOG4378|consen  227 VGYDKKINIYDIRSQASTDRLTYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRS  281 (673)
T ss_pred             ecccceEEEeecccccccceeeecCCcceeeecCCceEEEeecCCceEEEEeccc
Confidence            9999999999999888888887778889999999999999999999999999996

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=2.6e-22  Score=188.46  Aligned_cols=284  Identities=17%  Similarity=0.256  Sum_probs=217.7

Q ss_pred             CCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCC-EEEEEe
Q 008496          215 TSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT-LLATGS  293 (563)
Q Consensus       215 ~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~-~l~sg~  293 (563)
                      .+.|+++.|||.-.+|++||.|++++||.+... .+.     .+....+         ...+|.+.+|.|+|. .+++++
T Consensus       213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk-~N~-----~lqS~~l---------~~fPi~~a~f~p~G~~~i~~s~  277 (514)
T KOG2055|consen  213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGK-VNP-----KLQSIHL---------EKFPIQKAEFAPNGHSVIFTSG  277 (514)
T ss_pred             cCCceEEEecCCCceEEEecCCCcEEEEEecCc-cCh-----hheeeee---------ccCccceeeecCCCceEEEecc
Confidence            378999999999999999999999999998632 211     1111111         235799999999999 899999


Q ss_pred             CCCeEEEEEcCCceeE---eeccCC-CCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecCC-C
Q 008496          294 YDGQARIWSTNGDLKC---TLSKHK-GPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN-N  368 (563)
Q Consensus       294 ~dg~i~vw~~~~~~~~---~~~~h~-~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~  368 (563)
                      .-..++.||+......   .+.++. ..+.....+|++++|+..+..|.|.+--..+++++..+... +.+.++.|.. .
T Consensus       278 rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~Kie-G~v~~~~fsSds  356 (514)
T KOG2055|consen  278 RRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIE-GVVSDFTFSSDS  356 (514)
T ss_pred             cceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeec-cEEeeEEEecCC
Confidence            9999999998653332   233343 34566677999999999999999999999999988877653 4566777754 4


Q ss_pred             ceEEEEeCCCeEEEEEcCCCcceeeecCCCc-ceeEEEECCCCCEEEEEeCCCcEEEEeCCC------CceeeeecccCC
Q 008496          369 VSFATSSTDNMIYVCKIGENRPIKTFAGHQG-EVNCVKWDPTGSLLASCSDDVTAKIWNMKQ------DKYVHDLREHSK  441 (563)
Q Consensus       369 ~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~-~i~~~~~~~~~~~las~s~dg~i~iwd~~~------~~~~~~~~~~~~  441 (563)
                      ..+++++.+|.|++|+++....+..|....+ .-++++.++++.+||+||+.|.|.|||.++      .+++..+..-..
T Consensus       357 k~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt  436 (514)
T KOG2055|consen  357 KELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTT  436 (514)
T ss_pred             cEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhhe
Confidence            5678888899999999999988888763222 235788889999999999999999999653      345666666677


Q ss_pred             CEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEec---CCCCCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 008496          442 EIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLN---GHREPVYSLAFSPTGEYLASGSLDKSMHIW  518 (563)
Q Consensus       442 ~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~---~h~~~i~~l~~spdg~~lasgs~dg~v~iw  518 (563)
                      .|+++.|+|++.-       +.++|-..+..+|+-.+.+......+.   ..-+.|+|++|||.|.+||.|..+|+|.+|
T Consensus       437 ~Itsl~Fn~d~qi-------LAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~  509 (514)
T KOG2055|consen  437 AITSLQFNHDAQI-------LAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLF  509 (514)
T ss_pred             eeeeeeeCcchhh-------hhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeE
Confidence            8999999998751       234555567889998877654433332   223458999999999999999999999999


Q ss_pred             ecC
Q 008496          519 SLK  521 (563)
Q Consensus       519 ~~~  521 (563)
                      .+.
T Consensus       510 kL~  512 (514)
T KOG2055|consen  510 KLH  512 (514)
T ss_pred             eec
Confidence            875

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.91  E-value=3.7e-22  Score=178.36  Aligned_cols=243  Identities=23%  Similarity=0.415  Sum_probs=189.8

Q ss_pred             eccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCC--Cc--eeEEeeecccCeEEEecCC---CceEEEEeCCCeEEEE
Q 008496          311 LSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKT--EE--WKQQFEFHSGPTLDVDWRN---NVSFATSSTDNMIYVC  383 (563)
Q Consensus       311 ~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~--~~--~~~~~~~~~~~~~~~~~~~---~~~~~~~~~d~~i~~~  383 (563)
                      -.+|..-|.++.|.+.|+++++|+.|++++|||.+.  +.  +...+..|.+.+..+.|..   ...+|+|+.|+++.+|
T Consensus         9 ~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iW   88 (361)
T KOG2445|consen    9 DSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIW   88 (361)
T ss_pred             ccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeee
Confidence            357889999999999999999999999999999643  33  4557889999999999964   3578999999999999


Q ss_pred             EcCCC---------cceeeecCCCcceeEEEECCC--CCEEEEEeCCCcEEEEeCC------CCceeeeec-------cc
Q 008496          384 KIGEN---------RPIKTFAGHQGEVNCVKWDPT--GSLLASCSDDVTAKIWNMK------QDKYVHDLR-------EH  439 (563)
Q Consensus       384 ~~~~~---------~~~~~~~~h~~~i~~~~~~~~--~~~las~s~dg~i~iwd~~------~~~~~~~~~-------~~  439 (563)
                      .-...         ....++....+.|+.++|.|.  |-.+|+++.||.+|||+.-      .....++++       .+
T Consensus        89 EE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~  168 (361)
T KOG2445|consen   89 EEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKN  168 (361)
T ss_pred             eecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccc
Confidence            86321         123455666788999999985  5678999999999999753      333444444       46


Q ss_pred             CCCEEEEEEccCCCCCCCCCCcEEEEEEeCC-----CeEEEEeCCCC----eEEEEecCCCCCEEEEEEcCC-C---CEE
Q 008496          440 SKEIYTIRWSPTGSGTNNPNQQLILASASFD-----STVKLWDVELG----KLLYSLNGHREPVYSLAFSPT-G---EYL  506 (563)
Q Consensus       440 ~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~d-----g~i~iwd~~~~----~~~~~~~~h~~~i~~l~~spd-g---~~l  506 (563)
                      ..+..|+.|+|.-.      ++.+||.|+.+     +.++||....+    ..+.++.+|..||++|+|.|+ |   ..|
T Consensus       169 ~~~~~CvsWn~sr~------~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~l  242 (361)
T KOG2445|consen  169 KQPCFCVSWNPSRM------HEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLL  242 (361)
T ss_pred             cCcceEEeeccccc------cCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeE
Confidence            77889999996432      23468888766     47889975432    345677899999999999997 3   468


Q ss_pred             EEEeCCCcEEEEecCCC--------------------eeEEEEec-CCCEEEEEEcCCCCEEEEEECCCeEEEEE
Q 008496          507 ASGSLDKSMHIWSLKEG--------------------KIVKTYTG-NGGIFEVCWNKEGDKIAACFANHTVCVLD  560 (563)
Q Consensus       507 asgs~dg~v~iw~~~~~--------------------~~~~~~~~-~~~i~~l~w~~~g~~la~~~~~~~v~v~~  560 (563)
                      |+|+.|| |+||.++..                    +.+..+.. ++.|..++|+-.|..|++.+.||.|++|.
T Consensus       243 AvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWk  316 (361)
T KOG2445|consen  243 AVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWK  316 (361)
T ss_pred             EEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehh
Confidence            9999999 999999731                    12333433 45799999999999999999999999984

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=3.8e-22  Score=187.86  Aligned_cols=263  Identities=21%  Similarity=0.351  Sum_probs=204.1

Q ss_pred             EEeCC-CeEEEEEcC-CceeEeeccC-CCCEEEEEeCCCCCEEEEeeCC-CcEEEEECCCCceeEEeeecccCeEEEecC
Q 008496          291 TGSYD-GQARIWSTN-GDLKCTLSKH-KGPIFSLKWNKKGDYLLTGSCD-KTAIVWDVKTEEWKQQFEFHSGPTLDVDWR  366 (563)
Q Consensus       291 sg~~d-g~i~vw~~~-~~~~~~~~~h-~~~V~~l~~~~~~~~l~s~s~D-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~  366 (563)
                      +++.| ..+.+||+. |....++.+- ...-.++..- .+.|++++... ..+.+|.+.......+...-.+++.++.-.
T Consensus        12 ssS~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~   90 (476)
T KOG0646|consen   12 SSSFDPINCIVWDLRTGTSLLQYKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASS   90 (476)
T ss_pred             ccCCCCcceeEEecCCCceeEEecCcccccchhhhhh-chhheeeecccCccccccccCchhhhhhhcccccceeeeecC
Confidence            33444 458888875 3333344332 1111111111 23577776554 468899887665555555566788888888


Q ss_pred             CCceEEEEe-CCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCC---------CCceeeee
Q 008496          367 NNVSFATSS-TDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMK---------QDKYVHDL  436 (563)
Q Consensus       367 ~~~~~~~~~-~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~---------~~~~~~~~  436 (563)
                      +...|+.++ -.+.||+|.+.++..+..+.+|-..|+|+.|+-||.+|+|||.||.|.+|++.         +-++.+.+
T Consensus        91 n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f  170 (476)
T KOG0646|consen   91 NLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIF  170 (476)
T ss_pred             CCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeee
Confidence            888887776 88999999999999999999999999999999999999999999999999762         34577889


Q ss_pred             cccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEE
Q 008496          437 REHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMH  516 (563)
Q Consensus       437 ~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~  516 (563)
                      ..|.-+|+.+...+.|..       ..|+|+|.|.++|+||+..|.++.++. ...+|.+++.+|-++.+..|+.+|.|.
T Consensus       171 ~~HtlsITDl~ig~Gg~~-------~rl~TaS~D~t~k~wdlS~g~LLlti~-fp~si~av~lDpae~~~yiGt~~G~I~  242 (476)
T KOG0646|consen  171 SDHTLSITDLQIGSGGTN-------ARLYTASEDRTIKLWDLSLGVLLLTIT-FPSSIKAVALDPAERVVYIGTEEGKIF  242 (476)
T ss_pred             ccCcceeEEEEecCCCcc-------ceEEEecCCceEEEEEeccceeeEEEe-cCCcceeEEEcccccEEEecCCcceEE
Confidence            999999999998776532       278999999999999999999988876 456899999999999999999999999


Q ss_pred             EEecCCCe----------------eEEEEecC---CCEEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496          517 IWSLKEGK----------------IVKTYTGN---GGIFEVCWNKEGDKIAACFANHTVCVLDFR  562 (563)
Q Consensus       517 iw~~~~~~----------------~~~~~~~~---~~i~~l~w~~~g~~la~~~~~~~v~v~~~~  562 (563)
                      +.++.+..                ....+.++   ..|++|+.+.||+.|++|..||.|+|||+.
T Consensus       243 ~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~  307 (476)
T KOG0646|consen  243 QNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIY  307 (476)
T ss_pred             eeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecc
Confidence            98875432                12223332   369999999999999999999999999975

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.91  E-value=2.9e-22  Score=177.81  Aligned_cols=204  Identities=25%  Similarity=0.495  Sum_probs=167.2

Q ss_pred             ccCCCCEEEEEeCC-CCCEEEEeeCCCcEEEEECCCCc------ee---------EEeeecccCeEEEecC--CCceEEE
Q 008496          312 SKHKGPIFSLKWNK-KGDYLLTGSCDKTAIVWDVKTEE------WK---------QQFEFHSGPTLDVDWR--NNVSFAT  373 (563)
Q Consensus       312 ~~h~~~V~~l~~~~-~~~~l~s~s~D~~v~iwd~~~~~------~~---------~~~~~~~~~~~~~~~~--~~~~~~~  373 (563)
                      ..|.+.|.+|...+ .|+|+++|++||.+.+||++...      ++         +.-..|.-.+.++-|.  +...|.+
T Consensus        40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts  119 (397)
T KOG4283|consen   40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS  119 (397)
T ss_pred             ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence            46889999998876 57899999999999999997543      11         0112344456777774  5678999


Q ss_pred             EeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCC---CCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEEEEEcc
Q 008496          374 SSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT---GSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSP  450 (563)
Q Consensus       374 ~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~---~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p  450 (563)
                      ++-|.++.+||..+.+....|. -.+.|.+-+|+|-   .-++|+|..|-.|++-|+.++.+.+.+.+|.+.|.++.|+|
T Consensus       120 sSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp  198 (397)
T KOG4283|consen  120 SSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSP  198 (397)
T ss_pred             ccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEecc
Confidence            9999999999998877766664 4566777778874   34789999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC-eEEEEec--------------CCCCCEEEEEEcCCCCEEEEEeCCCcE
Q 008496          451 TGSGTNNPNQQLILASASFDSTVKLWDVELG-KLLYSLN--------------GHREPVYSLAFSPTGEYLASGSLDKSM  515 (563)
Q Consensus       451 ~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~--------------~h~~~i~~l~~spdg~~lasgs~dg~v  515 (563)
                      ...        .+|++||.||.||+||++.. .|...+.              .|.+.|+.++|+.||.++++++.|.++
T Consensus       199 ~~e--------~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~  270 (397)
T KOG4283|consen  199 SSE--------WVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRI  270 (397)
T ss_pred             Cce--------eEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccce
Confidence            753        68999999999999999854 3443333              466779999999999999999999999


Q ss_pred             EEEecCCCe
Q 008496          516 HIWSLKEGK  524 (563)
Q Consensus       516 ~iw~~~~~~  524 (563)
                      ++|+..+|+
T Consensus       271 r~wn~~~G~  279 (397)
T KOG4283|consen  271 RVWNMESGR  279 (397)
T ss_pred             EEeecccCc
Confidence            999998875

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=6.1e-21  Score=187.44  Aligned_cols=279  Identities=20%  Similarity=0.361  Sum_probs=212.5

Q ss_pred             CCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEEeC
Q 008496          215 TSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSY  294 (563)
Q Consensus       215 ~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~  294 (563)
                      ..+|.++||+.+.+.||.+-.||.|-||++..+=            +....+.+   +....|..++|+ +|..|++.+.
T Consensus        25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w------------~~~~vi~g---~~drsIE~L~W~-e~~RLFS~g~   88 (691)
T KOG2048|consen   25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNW------------FLEPVIHG---PEDRSIESLAWA-EGGRLFSSGL   88 (691)
T ss_pred             ccceEEEEEeccCCceeeeccCCcEEEEccCCCc------------eeeEEEec---CCCCceeeEEEc-cCCeEEeecC
Confidence            4679999999999999999999999999986531            11111222   446789999999 4556788899


Q ss_pred             CCeEEEEEcC-CceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecCCCceEEE
Q 008496          295 DGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFAT  373 (563)
Q Consensus       295 dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (563)
                      +|.|.-||+. ++.+..+....++|++++.+|.+..++.|+.||.+...+...+.....                     
T Consensus        89 sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~---------------------  147 (691)
T KOG2048|consen   89 SGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYK---------------------  147 (691)
T ss_pred             CceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEE---------------------
Confidence            9999999975 566777888889999999999999999999999776666655432110                     


Q ss_pred             EeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeec-----c---cCCCEEE
Q 008496          374 SSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLR-----E---HSKEIYT  445 (563)
Q Consensus       374 ~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~-----~---~~~~i~~  445 (563)
                                        ..|...++.|.+++|+|++..||+|+.||.|++||..++..++-..     .   ...-|.+
T Consensus       148 ------------------r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWS  209 (691)
T KOG2048|consen  148 ------------------RSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWS  209 (691)
T ss_pred             ------------------eecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEE
Confidence                              1122235789999999999999999999999999999887665211     1   1223556


Q ss_pred             EEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCee
Q 008496          446 IRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKI  525 (563)
Q Consensus       446 ~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~  525 (563)
                      +.+-.++          .|++|..-|+|++||...+.++.....|...|.+++-++++.+++++|.|++|.-|...+++-
T Consensus       210 v~~Lrd~----------tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~  279 (691)
T KOG2048|consen  210 VLFLRDS----------TIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKS  279 (691)
T ss_pred             EEEeecC----------cEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCcc
Confidence            6655444          589999999999999999999999999999999999999999999999999999998876543


Q ss_pred             E--EE--Eec-CCCEEEEEEcCCCCEEEEEECCCeEEEEE
Q 008496          526 V--KT--YTG-NGGIFEVCWNKEGDKIAACFANHTVCVLD  560 (563)
Q Consensus       526 ~--~~--~~~-~~~i~~l~w~~~g~~la~~~~~~~v~v~~  560 (563)
                      -  ..  ... ...+-+++--++  .|.+|+.|..++|--
T Consensus       280 ~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~  317 (691)
T KOG2048|consen  280 EWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICS  317 (691)
T ss_pred             ceeeeccccCCcccceeeeeecc--eEEecceeeEEEEcc
Confidence            1  11  111 223555555444  777777777776643

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.90  E-value=1.3e-21  Score=175.96  Aligned_cols=284  Identities=26%  Similarity=0.439  Sum_probs=207.6

Q ss_pred             EEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCce---EEEEEeeecccccCCCCeEEEEEC-------CCCCE
Q 008496          219 CACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLN---VLVLKHVKGRTNEKSKDVTTLDWN-------GEGTL  288 (563)
Q Consensus       219 ~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~V~~l~~s-------~~g~~  288 (563)
                      ..|.|||||..|++-+.|..+++|+++.......+ ..+..   ...++.      .....|...+|-       |+..+
T Consensus        53 kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~-~~~~~~~~~~~~r~------~eg~tvydy~wYs~M~s~qP~t~l  125 (406)
T KOG2919|consen   53 KGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKA-DGPLNFSKHLSYRY------QEGETVYDYCWYSRMKSDQPSTNL  125 (406)
T ss_pred             ccceeCCCCceEEeecccCeeeEEecChhhcccCC-CCccccccceeEEe------ccCCEEEEEEeeeccccCCCccce
Confidence            36899999999999999999999998753322211 11111   111111      123457888885       67889


Q ss_pred             EEEEeCCCeEEEEEc-CCceeEeecc--CCC---CEEEEEeCCCCCEEEEeeCCCcEEEEEC-CCCceeEEeeecccCeE
Q 008496          289 LATGSYDGQARIWST-NGDLKCTLSK--HKG---PIFSLKWNKKGDYLLTGSCDKTAIVWDV-KTEEWKQQFEFHSGPTL  361 (563)
Q Consensus       289 l~sg~~dg~i~vw~~-~~~~~~~~~~--h~~---~V~~l~~~~~~~~l~s~s~D~~v~iwd~-~~~~~~~~~~~~~~~~~  361 (563)
                      +++.+.+.-|.+||. .|++.+.+..  |..   ...+|+|+|+|.+|++|. .++|+++|+ +.|..-..+..      
T Consensus       126 ~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t------  198 (406)
T KOG2919|consen  126 FAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTT------  198 (406)
T ss_pred             eeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhh------
Confidence            999999999999995 5777766543  433   346899999999999875 579999998 54431111100      


Q ss_pred             EEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCC-CEEEEEeCCCcEEEEeCCCCceeeeecccC
Q 008496          362 DVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTG-SLLASCSDDVTAKIWNMKQDKYVHDLREHS  440 (563)
Q Consensus       362 ~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~-~~las~s~dg~i~iwd~~~~~~~~~~~~~~  440 (563)
                        .                          .+--.+..+-|.|++|+|.. +.+|.|+.-.++-||.-...+++..+.+|.
T Consensus       199 --~--------------------------~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~  250 (406)
T KOG2919|consen  199 --V--------------------------TKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHG  250 (406)
T ss_pred             --h--------------------------hcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccC
Confidence              0                          00012345678899999965 589999999999999988899999999999


Q ss_pred             CCEEEEEEccCCCCCCCCCCcEEEEEEe-CCCeEEEEeCCC-CeEEEEecCCCC-CEEEEEE--cCCCCEEEEEeCCCcE
Q 008496          441 KEIYTIRWSPTGSGTNNPNQQLILASAS-FDSTVKLWDVEL-GKLLYSLNGHRE-PVYSLAF--SPTGEYLASGSLDKSM  515 (563)
Q Consensus       441 ~~i~~~~~~p~~~~~~~~~~~~~l~s~s-~dg~i~iwd~~~-~~~~~~~~~h~~-~i~~l~~--spdg~~lasgs~dg~v  515 (563)
                      +.|+.++|.++|.         -|.+|+ .|..|..||++. +..++.+..|.. .-..|-|  .|+|++||+|+.||.|
T Consensus       251 gGvThL~~~edGn---------~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V  321 (406)
T KOG2919|consen  251 GGVTHLQWCEDGN---------KLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSV  321 (406)
T ss_pred             CCeeeEEeccCcC---------eecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccE
Confidence            9999999999985         355554 478999999985 456778877765 3334555  6899999999999999


Q ss_pred             EEEecCC-CeeEEEEe-cCCCEEEEEEcCCCCEEEEEECC
Q 008496          516 HIWSLKE-GKIVKTYT-GNGGIFEVCWNKEGDKIAACFAN  553 (563)
Q Consensus       516 ~iw~~~~-~~~~~~~~-~~~~i~~l~w~~~g~~la~~~~~  553 (563)
                      ++||+++ |..+..+. ....+..++++|--.++|++++.
T Consensus       322 ~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGq  361 (406)
T KOG2919|consen  322 RVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQ  361 (406)
T ss_pred             EEEecCCCCCcccccccccccccceecCcccceeeeccCc
Confidence            9999987 55343332 34567899999998889988765

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.90  E-value=4.9e-22  Score=182.12  Aligned_cols=256  Identities=26%  Similarity=0.486  Sum_probs=194.5

Q ss_pred             cCCCCceEEEEECCCC--CEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEE
Q 008496          212 EGHTSEVCACAWSPAG--SLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLL  289 (563)
Q Consensus       212 ~~h~~~V~~~~~sp~~--~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l  289 (563)
                      .+|.+.|+.+.-++-+  .+.|+-+..|.+.||++....                             .+  ++..+ +.
T Consensus       148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l-----------------------------~~--l~~~~-~~  195 (440)
T KOG0302|consen  148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHL-----------------------------NA--LSEPG-LE  195 (440)
T ss_pred             cccccccceeeecccCCcceeeeecccCcEEEEEchhhh-----------------------------hh--hcCcc-cc
Confidence            4677778877777754  567777789999999975311                             00  00000 00


Q ss_pred             EEEeCCCeEEEEEcCCceeEeeccCCCCEEEEEeCCCCC-EEEEeeCCCcEEEEECCCCceeE---EeeecccCeEEEec
Q 008496          290 ATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGD-YLLTGSCDKTAIVWDVKTEEWKQ---QFEFHSGPTLDVDW  365 (563)
Q Consensus       290 ~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~-~l~s~s~D~~v~iwd~~~~~~~~---~~~~~~~~~~~~~~  365 (563)
                      +          =+.....+.++.+|.+.=++|+|||--. .|+||..-+.|++|...++.|.-   .|..|...|-++.|
T Consensus       196 ~----------~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqW  265 (440)
T KOG0302|consen  196 V----------KDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQW  265 (440)
T ss_pred             c----------cccccCceEEecccCccceeeecccccccccccCccccceEeeeeccCceeecCccccccccchhhhcc
Confidence            0          0123455667889999999999999443 48899989999999999988764   46678888999999


Q ss_pred             CC--CceEEEEeCCCeEEEEEcCCC--cceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCC---Cceeeeecc
Q 008496          366 RN--NVSFATSSTDNMIYVCKIGEN--RPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQ---DKYVHDLRE  438 (563)
Q Consensus       366 ~~--~~~~~~~~~d~~i~~~~~~~~--~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~---~~~~~~~~~  438 (563)
                      .+  +..|++|+.|++|++||++..  ++....+.|.+.|+.|.|+....+||+|++||+++|||+++   +.++..|+.
T Consensus       266 SptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~  345 (440)
T KOG0302|consen  266 SPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKY  345 (440)
T ss_pred             CCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEe
Confidence            64  568999999999999999876  34455589999999999999999999999999999999874   567889999


Q ss_pred             cCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC-------------------eEEEEecCCCCCEEEEEE
Q 008496          439 HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG-------------------KLLYSLNGHREPVYSLAF  499 (563)
Q Consensus       439 ~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~-------------------~~~~~~~~h~~~i~~l~~  499 (563)
                      |..+|++|.|+|....        .|++++.|..|.|||+..-                   ++++.-.+ ...|..+.|
T Consensus       346 Hk~pItsieW~p~e~s--------~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqG-Qke~KevhW  416 (440)
T KOG0302|consen  346 HKAPITSIEWHPHEDS--------VIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQG-QKEVKEVHW  416 (440)
T ss_pred             ccCCeeEEEeccccCc--------eEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecc-hhHhhhhee
Confidence            9999999999997643        6888999999999997531                   12233222 234778899


Q ss_pred             cCCC-CEEEEEeCCCcEEEEe
Q 008496          500 SPTG-EYLASGSLDKSMHIWS  519 (563)
Q Consensus       500 spdg-~~lasgs~dg~v~iw~  519 (563)
                      ++.- .+|++.+.|| +.||.
T Consensus       417 H~QiPG~lvsTa~dG-fnVfk  436 (440)
T KOG0302|consen  417 HRQIPGLLVSTAIDG-FNVFK  436 (440)
T ss_pred             ccCCCCeEEEecccc-eeEEE
Confidence            9874 5778888888 55664

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.90  E-value=3.1e-19  Score=182.79  Aligned_cols=327  Identities=34%  Similarity=0.639  Sum_probs=253.9

Q ss_pred             EecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEE-CCCCC-
Q 008496          210 ILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDW-NGEGT-  287 (563)
Q Consensus       210 ~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~-s~~g~-  287 (563)
                      .+.+|...|.++.|++.+..++.++.|+.+.+|+...+..            .........   ...+..+.+ ++++. 
T Consensus        60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~------------~~~~~~~~~---~~~~~~~~~~~~~~~~  124 (466)
T COG2319          60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEK------------LIKSLEGLH---DSSVSKLALSSPDGNS  124 (466)
T ss_pred             eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCce------------eEEEEeccC---CCceeeEEEECCCcce
Confidence            4567899999999999999999999999999999875430            011111100   034666666 78887 


Q ss_pred             EEEEEeC-CCeEEEEEcCC--ceeEeeccCCCCEEEEEeCCCCCEEEEeeC-CCcEEEEECCCCceeEEeeecccCeEEE
Q 008496          288 LLATGSY-DGQARIWSTNG--DLKCTLSKHKGPIFSLKWNKKGDYLLTGSC-DKTAIVWDVKTEEWKQQFEFHSGPTLDV  363 (563)
Q Consensus       288 ~l~sg~~-dg~i~vw~~~~--~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~-D~~v~iwd~~~~~~~~~~~~~~~~~~~~  363 (563)
                      +++..+. |+.+++|+...  .....+..|...|..++|+|++.++++++. |+.+++|++..+.....+..|...+..+
T Consensus       125 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  204 (466)
T COG2319         125 ILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSL  204 (466)
T ss_pred             EEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEE
Confidence            5555444 99999999885  677788999999999999999998888885 9999999999888888888888899999


Q ss_pred             ecCCCce-E-EEEeCCCeEEEEEcCCCccee-eecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCce-eeeeccc
Q 008496          364 DWRNNVS-F-ATSSTDNMIYVCKIGENRPIK-TFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKY-VHDLREH  439 (563)
Q Consensus       364 ~~~~~~~-~-~~~~~d~~i~~~~~~~~~~~~-~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~-~~~~~~~  439 (563)
                      .|..+.. + ++++.|+.|.+|+......+. .+.+|.... ...|+|++.++++++.|+.+++|+...... +..+..|
T Consensus       205 ~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~  283 (466)
T COG2319         205 AFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGH  283 (466)
T ss_pred             EEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecC
Confidence            9986553 4 444899999999887666666 688888875 448999999999999999999999986664 4444678


Q ss_pred             CCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEec--CCCCCEEEEEEcCCCCEEEEE-eCCCcEE
Q 008496          440 SKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLN--GHREPVYSLAFSPTGEYLASG-SLDKSMH  516 (563)
Q Consensus       440 ~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--~h~~~i~~l~~spdg~~lasg-s~dg~v~  516 (563)
                      ...+.++.|.|.+.         .+++++.|+.+++||...........  .|...+..+.|++++..++.+ ..|+.+.
T Consensus       284 ~~~v~~~~~~~~~~---------~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  354 (466)
T COG2319         284 SSSVLSVAFSPDGK---------LLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIR  354 (466)
T ss_pred             CccEEEEEECCCCC---------EEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEE
Confidence            89999999998543         45568888999999998887766665  788889999994443566655 6889999


Q ss_pred             EEecCCCeeEEEEecCCCEEEEEEcCCCCEEEE-EECCCeEEEEEee
Q 008496          517 IWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAA-CFANHTVCVLDFR  562 (563)
Q Consensus       517 iw~~~~~~~~~~~~~~~~i~~l~w~~~g~~la~-~~~~~~v~v~~~~  562 (563)
                      +|++..............+..+.|.+ ...+.. +..++.+.+|+.+
T Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  400 (466)
T COG2319         355 LWDLRTGKPLKTLEGHSNVLSVSFSP-DGRVVSSGSTDGTVRLWDLS  400 (466)
T ss_pred             eeecCCCceeEEecCCceEEEEEECC-CCCEEEEecCCCceEEEecc
Confidence            99998877333333333378999999 544443 6788899999875

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.89  E-value=2.2e-21  Score=179.74  Aligned_cols=313  Identities=19%  Similarity=0.356  Sum_probs=191.2

Q ss_pred             CceEEEEECCCCC-EEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEEeC
Q 008496          216 SEVCACAWSPAGS-LLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSY  294 (563)
Q Consensus       216 ~~V~~~~~sp~~~-~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~  294 (563)
                      .+|..+.|.+... .|||||.|..||||.+..+...+..    ..+..    ......|...|+++.|+|+|.+|++|+.
T Consensus        14 ~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~----~~V~y----~s~Ls~H~~aVN~vRf~p~gelLASg~D   85 (434)
T KOG1009|consen   14 EPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGD----MKVEY----LSSLSRHTRAVNVVRFSPDGELLASGGD   85 (434)
T ss_pred             CceEEEEeccCcccceecccCccceeeeeeeecCCCCCc----eeEEE----eecccCCcceeEEEEEcCCcCeeeecCC
Confidence            5789999999865 9999999999999998765432211    11111    1223456788999999999999999999


Q ss_pred             CCeEEEEEcC--------C---------ceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecc
Q 008496          295 DGQARIWSTN--------G---------DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHS  357 (563)
Q Consensus       295 dg~i~vw~~~--------~---------~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~  357 (563)
                      +|.+.+|...        .         ..+..+.+|...|+.++|+|++.++++++.|+++++||+..+.....+..|.
T Consensus        86 ~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~  165 (434)
T KOG1009|consen   86 GGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHE  165 (434)
T ss_pred             CceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccc
Confidence            9999999754        2         1234678899999999999999999999999999999999998777666666


Q ss_pred             cCeEEEecCCCce-EEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCC---cEEEEeCCCCcee
Q 008496          358 GPTLDVDWRNNVS-FATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDV---TAKIWNMKQDKYV  433 (563)
Q Consensus       358 ~~~~~~~~~~~~~-~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg---~i~iwd~~~~~~~  433 (563)
                      .-+..+.|..-.. +++-+.|...+.+.+...+.          +.++..   ...++-....+   ..|++.-++.+  
T Consensus       166 ~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~----------~~~~~~---~~m~~~~~~~~e~~s~rLfhDeTlk--  230 (434)
T KOG1009|consen  166 HYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQV----------IKRHGL---DIMPAKAFNEREGKSTRLFHDETLK--  230 (434)
T ss_pred             cccceeecchhhhhhhhhccCcccceeeeeeeee----------eeeeee---eEeeecccCCCCcceeeeeecCchh--
Confidence            5555566654332 23333333222222211111          111110   00111111111   12222211111  


Q ss_pred             eeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEe--CCCeEEEEeCC-CCeEEEEecCCCCCEEEEEEcC---------
Q 008496          434 HDLREHSKEIYTIRWSPTGSGTNNPNQQLILASAS--FDSTVKLWDVE-LGKLLYSLNGHREPVYSLAFSP---------  501 (563)
Q Consensus       434 ~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s--~dg~i~iwd~~-~~~~~~~~~~h~~~i~~l~~sp---------  501 (563)
                             .-...++|+|+|.-...|.+.  +-++.  .-++.++++-. ..++...+.+-..++..+.|+|         
T Consensus       231 -------sFFrRlsfTPdG~llvtPag~--~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~  301 (434)
T KOG1009|consen  231 -------SFFRRLSFTPDGSLLVTPAGL--FKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLS  301 (434)
T ss_pred             -------hhhhhcccCCCCcEEEcccce--eeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEecccc
Confidence                   112456777877521111110  00000  01223334322 1234445555555666666665         


Q ss_pred             ---------CCCEEEEEeCCCcEEEEecCCCeeEEEEe--cCCCEEEEEEcCCCCEEEEEECCCeEEEEEe
Q 008496          502 ---------TGEYLASGSLDKSMHIWSLKEGKIVKTYT--GNGGIFEVCWNKEGDKIAACFANHTVCVLDF  561 (563)
Q Consensus       502 ---------dg~~lasgs~dg~v~iw~~~~~~~~~~~~--~~~~i~~l~w~~~g~~la~~~~~~~v~v~~~  561 (563)
                               -+-.+|.++.+ .|+|||.++-..+....  .-..|++++|++||..|++++.||.+.++-|
T Consensus       302 ~~~~~~~lpyrlvfaiAt~~-svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtf  371 (434)
T KOG1009|consen  302 SEKFLFVLPYRLVFAIATKN-SVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTF  371 (434)
T ss_pred             ccccccccccceEEEEeecc-eEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEEEEE
Confidence                     22345666655 59999988765443332  2457899999999999999999998877655

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.89  E-value=3.2e-21  Score=173.93  Aligned_cols=297  Identities=21%  Similarity=0.404  Sum_probs=206.9

Q ss_pred             eEecCCCCceEEEEECC----C-CCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEEC
Q 008496          209 TILEGHTSEVCACAWSP----A-GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWN  283 (563)
Q Consensus       209 ~~l~~h~~~V~~~~~sp----~-~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s  283 (563)
                      .+...|+.+|+.++|++    + ...+||.|+ ..+.||.......          ...+.....  ..+......++|+
T Consensus        32 ~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~----------ir~lq~y~D--~d~~Esfytcsw~   98 (385)
T KOG1034|consen   32 HLKEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGG----------IRLLQSYAD--EDHDESFYTCSWS   98 (385)
T ss_pred             ehhccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccc----------eeeeeeccC--CCCCcceEEEEEE
Confidence            45678999999999996    2 246777655 5688888653210          011111111  1234456778887


Q ss_pred             CC----CCEEEEEeCCCeEEEEEcC-CceeEeeccCCCCEEEEEeCCCC-CEEEEeeCCCcEEEEECCCCceeEEeeecc
Q 008496          284 GE----GTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKG-DYLLTGSCDKTAIVWDVKTEEWKQQFEFHS  357 (563)
Q Consensus       284 ~~----g~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~-~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~  357 (563)
                      -+    ..++|.||.-|.|||.|.. ++....+.+|..+|..++++|.. ++++++|.|.+|++||+++..++..|.   
T Consensus        99 yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfG---  175 (385)
T KOG1034|consen   99 YDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFG---  175 (385)
T ss_pred             ecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEec---
Confidence            54    4578999999999999975 56667889999999999999976 678999999999999999987665442   


Q ss_pred             cCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeec
Q 008496          358 GPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLR  437 (563)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~  437 (563)
                                                         -+.||.+.|.+++|+++|.+|+||+.|.+|++|+++..+.-..+.
T Consensus       176 -----------------------------------G~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE  220 (385)
T KOG1034|consen  176 -----------------------------------GVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLE  220 (385)
T ss_pred             -----------------------------------ccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhh
Confidence                                               246899999999999999999999999999999997543211110


Q ss_pred             ccCCCEEEEEEccCCCC-------CCCCC------C----------cEEEEEEeCCCeEEEEeC-CCCeE----------
Q 008496          438 EHSKEIYTIRWSPTGSG-------TNNPN------Q----------QLILASASFDSTVKLWDV-ELGKL----------  483 (563)
Q Consensus       438 ~~~~~i~~~~~~p~~~~-------~~~~~------~----------~~~l~s~s~dg~i~iwd~-~~~~~----------  483 (563)
                            .++.|+|++..       ...|.      +          -.+++|-|.++.|..|.. +-++.          
T Consensus       221 ------~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~  294 (385)
T KOG1034|consen  221 ------LSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFGDFILSKSCENAIVCWKPGKLEESIHNVKPPESA  294 (385)
T ss_pred             ------hhcccCCCCccCcCCccccccccccccccccchHHHHHHHhhheeecccCceEEEEecchhhhhhhccCCCccc
Confidence                  01122222211       00000      0          015788889999999976 21111          


Q ss_pred             ---EEEecCCCCCEEEEE--EcCCCCEEEEEeCCCcEEEEecCCCeeEE--EE---ecCCCEEEEEEcCCCCEEEEEECC
Q 008496          484 ---LYSLNGHREPVYSLA--FSPTGEYLASGSLDKSMHIWSLKEGKIVK--TY---TGNGGIFEVCWNKEGDKIAACFAN  553 (563)
Q Consensus       484 ---~~~~~~h~~~i~~l~--~spdg~~lasgs~dg~v~iw~~~~~~~~~--~~---~~~~~i~~l~w~~~g~~la~~~~~  553 (563)
                         +.++.-....|+-+.  |.|-+++||.|...|.|.+||++......  ++   .....|-..+|+.||..|++...+
T Consensus       295 ~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd  374 (385)
T KOG1034|consen  295 TTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDD  374 (385)
T ss_pred             eeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCC
Confidence               222322233455554  55668999999999999999998765421  11   234457889999999999999999


Q ss_pred             CeEEEEEee
Q 008496          554 HTVCVLDFR  562 (563)
Q Consensus       554 ~~v~v~~~~  562 (563)
                      ++|.-||..
T Consensus       375 ~~Vwrwdrv  383 (385)
T KOG1034|consen  375 GTVWRWDRV  383 (385)
T ss_pred             CcEEEEEee
Confidence            999999864

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.89  E-value=8.6e-23  Score=211.81  Aligned_cols=242  Identities=21%  Similarity=0.455  Sum_probs=198.1

Q ss_pred             CCeEEEEECCCCCE----EEEEeCCCeEEEEEcCC-------ceeEeeccCCCCEEEEEeCCCCC-EEEEeeCCCcEEEE
Q 008496          275 KDVTTLDWNGEGTL----LATGSYDGQARIWSTNG-------DLKCTLSKHKGPIFSLKWNKKGD-YLLTGSCDKTAIVW  342 (563)
Q Consensus       275 ~~V~~l~~s~~g~~----l~sg~~dg~i~vw~~~~-------~~~~~~~~h~~~V~~l~~~~~~~-~l~s~s~D~~v~iw  342 (563)
                      .....|+|.+.|..    |+.|..||.|.+|+...       ....+...|+++|.+|.|++... .|++|+.||.|.||
T Consensus        65 ~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iW  144 (1049)
T KOG0307|consen   65 NRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIW  144 (1049)
T ss_pred             ccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEe
Confidence            45788999987765    89999999999999653       23446788999999999999765 89999999999999


Q ss_pred             ECCCCceeEEee--ecccCeEEEecCCC--ceEEEEeCCCeEEEEEcCCCcceeeecCCCc--ceeEEEECCCC-CEEEE
Q 008496          343 DVKTEEWKQQFE--FHSGPTLDVDWRNN--VSFATSSTDNMIYVCKIGENRPIKTFAGHQG--EVNCVKWDPTG-SLLAS  415 (563)
Q Consensus       343 d~~~~~~~~~~~--~~~~~~~~~~~~~~--~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~--~i~~~~~~~~~-~~las  415 (563)
                      |+...+..-.+.  .....|.++.|...  ..|++++.+|.+.+||++..+++..+.-|.+  .+..++|+|+. ..|++
T Consensus       145 Dlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~  224 (1049)
T KOG0307|consen  145 DLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLV  224 (1049)
T ss_pred             ccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeee
Confidence            998643322221  12345788899754  4678889999999999999999988876655  47789999986 45666


Q ss_pred             EeCCC---cEEEEeCCC-CceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCC
Q 008496          416 CSDDV---TAKIWNMKQ-DKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHR  491 (563)
Q Consensus       416 ~s~dg---~i~iwd~~~-~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~  491 (563)
                      +++|.   .|.+||++. ..+++.++.|...|.++.|++.+.        .+|+|++.|+.|.+|+..+++.+..+....
T Consensus       225 As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~--------~lllSsgkD~~ii~wN~~tgEvl~~~p~~~  296 (1049)
T KOG0307|consen  225 ASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDP--------RLLLSSGKDNRIICWNPNTGEVLGELPAQG  296 (1049)
T ss_pred             ecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCc--------hhhhcccCCCCeeEecCCCceEeeecCCCC
Confidence            66654   589999875 345677889999999999998763        388999999999999999999999998878


Q ss_pred             CCEEEEEEcCCCC-EEEEEeCCCcEEEEecCCCe
Q 008496          492 EPVYSLAFSPTGE-YLASGSLDKSMHIWSLKEGK  524 (563)
Q Consensus       492 ~~i~~l~~spdg~-~lasgs~dg~v~iw~~~~~~  524 (563)
                      ..++.+.|.|-.. .++.++.||.|-||.+..+.
T Consensus       297 nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~  330 (1049)
T KOG0307|consen  297 NWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD  330 (1049)
T ss_pred             cceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence            8999999999765 78899999999999997654

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.89  E-value=6.2e-22  Score=181.50  Aligned_cols=220  Identities=25%  Similarity=0.454  Sum_probs=169.3

Q ss_pred             EeeccCCCCEEEEEeCCCC--CEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcC
Q 008496          309 CTLSKHKGPIFSLKWNKKG--DYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIG  386 (563)
Q Consensus       309 ~~~~~h~~~V~~l~~~~~~--~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~  386 (563)
                      .....|.+.+.-++-.+-+  .+.++-+..|.|.|||+...-  +.+.                     ..+...  ...
T Consensus       145 ~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l--~~l~---------------------~~~~~~--~~s  199 (440)
T KOG0302|consen  145 MKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHL--NALS---------------------EPGLEV--KDS  199 (440)
T ss_pred             ccccccccccceeeecccCCcceeeeecccCcEEEEEchhhh--hhhc---------------------Cccccc--ccc
Confidence            3455677777777776655  345556678999999975421  0000                     000000  013


Q ss_pred             CCcceeeecCCCcceeEEEECCCC-CEEEEEeCCCcEEEEeCCCCcee---eeecccCCCEEEEEEccCCCCCCCCCCcE
Q 008496          387 ENRPIKTFAGHQGEVNCVKWDPTG-SLLASCSDDVTAKIWNMKQDKYV---HDLREHSKEIYTIRWSPTGSGTNNPNQQL  462 (563)
Q Consensus       387 ~~~~~~~~~~h~~~i~~~~~~~~~-~~las~s~dg~i~iwd~~~~~~~---~~~~~~~~~i~~~~~~p~~~~~~~~~~~~  462 (563)
                      ..+|+.++.+|.+.=..++|||-. ..|+||.--+.|++|...++...   ..|.+|...|-.++|+|...        .
T Consensus       200 ~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~--------~  271 (440)
T KOG0302|consen  200 EFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTED--------G  271 (440)
T ss_pred             ccCceEEecccCccceeeecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccC--------c
Confidence            567899999999999999999932 23678888889999998877653   34567999999999999765        3


Q ss_pred             EEEEEeCCCeEEEEeCCCC---eEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCC---CeeEEEEec-CCCE
Q 008496          463 ILASASFDSTVKLWDVELG---KLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKE---GKIVKTYTG-NGGI  535 (563)
Q Consensus       463 ~l~s~s~dg~i~iwd~~~~---~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~---~~~~~~~~~-~~~i  535 (563)
                      +++|||.||+|+|||++.+   .++.+ +.|.+-|+.|+|+..-.+||+|+.||+++|||++.   ++.+.+|+- ...|
T Consensus       272 vfaScS~DgsIrIWDiRs~~~~~~~~~-kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pI  350 (440)
T KOG0302|consen  272 VFASCSCDGSIRIWDIRSGPKKAAVST-KAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPI  350 (440)
T ss_pred             eEEeeecCceEEEEEecCCCccceeEe-eccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCe
Confidence            8999999999999999987   34444 78999999999999988999999999999999986   456777764 5689


Q ss_pred             EEEEEcCC-CCEEEEEECCCeEEEEEee
Q 008496          536 FEVCWNKE-GDKIAACFANHTVCVLDFR  562 (563)
Q Consensus       536 ~~l~w~~~-g~~la~~~~~~~v~v~~~~  562 (563)
                      +++.|+|. ...||+++.|.+|++||+.
T Consensus       351 tsieW~p~e~s~iaasg~D~QitiWDls  378 (440)
T KOG0302|consen  351 TSIEWHPHEDSVIAASGEDNQITIWDLS  378 (440)
T ss_pred             eEEEeccccCceEEeccCCCcEEEEEee
Confidence            99999995 4688888899999999985

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.89  E-value=3.4e-22  Score=189.25  Aligned_cols=237  Identities=21%  Similarity=0.372  Sum_probs=195.8

Q ss_pred             CceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEEeCC
Q 008496          216 SEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYD  295 (563)
Q Consensus       216 ~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~d  295 (563)
                      .-|.+|..+|||+.|++||.-.++.|||+...+..-               +.......-...+++.|||.++.+++..|
T Consensus       466 nyiRSckL~pdgrtLivGGeastlsiWDLAapTpri---------------kaeltssapaCyALa~spDakvcFsccsd  530 (705)
T KOG0639|consen  466 NYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRI---------------KAELTSSAPACYALAISPDAKVCFSCCSD  530 (705)
T ss_pred             cceeeeEecCCCceEEeccccceeeeeeccCCCcch---------------hhhcCCcchhhhhhhcCCccceeeeeccC
Confidence            347889999999999999999999999997643211               11111112345678999999999999999


Q ss_pred             CeEEEEEcCC-ceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecCCCceEEEE
Q 008496          296 GQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATS  374 (563)
Q Consensus       296 g~i~vw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  374 (563)
                      |.|+|||+.. .++..|.+|+..+.||..+++|..|-||+.|++||.||++++...++..+                   
T Consensus       531 GnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF-------------------  591 (705)
T KOG0639|consen  531 GNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDF-------------------  591 (705)
T ss_pred             CcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhhh-------------------
Confidence            9999999865 46678999999999999999999999999999999999998754433221                   


Q ss_pred             eCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEEEEEccCCCC
Q 008496          375 STDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSG  454 (563)
Q Consensus       375 ~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~  454 (563)
                                             ...|.++.++|++.+||.|-.++.+.|-..... ..+.+..|...|.++.|.+.|. 
T Consensus       592 -----------------------~SQIfSLg~cP~~dWlavGMens~vevlh~skp-~kyqlhlheScVLSlKFa~cGk-  646 (705)
T KOG0639|consen  592 -----------------------SSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKP-EKYQLHLHESCVLSLKFAYCGK-  646 (705)
T ss_pred             -----------------------hhhheecccCCCccceeeecccCcEEEEecCCc-cceeecccccEEEEEEecccCc-
Confidence                                   235667888999999999999998888765433 2345667899999999999986 


Q ss_pred             CCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEec
Q 008496          455 TNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSL  520 (563)
Q Consensus       455 ~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~  520 (563)
                              ++++.+.|+.+..|..--|..++..+. ..+|++...|-|.+||+|||.|+...||.+
T Consensus       647 --------wfvStGkDnlLnawrtPyGasiFqskE-~SsVlsCDIS~ddkyIVTGSGdkkATVYeV  703 (705)
T KOG0639|consen  647 --------WFVSTGKDNLLNAWRTPYGASIFQSKE-SSSVLSCDISFDDKYIVTGSGDKKATVYEV  703 (705)
T ss_pred             --------eeeecCchhhhhhccCccccceeeccc-cCcceeeeeccCceEEEecCCCcceEEEEE
Confidence                    789999999999999988998888874 578999999999999999999998888875

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.89  E-value=8e-21  Score=170.25  Aligned_cols=234  Identities=16%  Similarity=0.251  Sum_probs=185.1

Q ss_pred             CCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEe
Q 008496          274 SKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQF  353 (563)
Q Consensus       274 ~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~  353 (563)
                      ...|+.|.|+|.+..|+.++.||.+++|+.........-.|..|+.+++|.+ ...+++|+.||.|+.+|+.++..    
T Consensus        13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~----   87 (323)
T KOG1036|consen   13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNE----   87 (323)
T ss_pred             hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccC-CceEEEeccCceEEEEEecCCcc----
Confidence            4679999999999999999999999999987765445557999999999987 46799999999999999987641    


Q ss_pred             eecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCcee
Q 008496          354 EFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYV  433 (563)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~  433 (563)
                                                            ..+..|...|.|+.+.+-...+++||.|++|++||.+....+
T Consensus        88 --------------------------------------~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~  129 (323)
T KOG1036|consen   88 --------------------------------------DQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVV  129 (323)
T ss_pred             --------------------------------------eeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccc
Confidence                                                  123458889999999998889999999999999999876555


Q ss_pred             eeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEec--CCCCCEEEEEEcCCCCEEEEEeC
Q 008496          434 HDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLN--GHREPVYSLAFSPTGEYLASGSL  511 (563)
Q Consensus       434 ~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--~h~~~i~~l~~spdg~~lasgs~  511 (563)
                      ..+.. ...|+++...-+           .|+.|..|..|.+||+++........  ...-.+.+|++-|++.-+|.+|-
T Consensus       130 ~~~d~-~kkVy~~~v~g~-----------~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSi  197 (323)
T KOG1036|consen  130 GTFDQ-GKKVYCMDVSGN-----------RLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSI  197 (323)
T ss_pred             ccccc-CceEEEEeccCC-----------EEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEee
Confidence            54433 347888765432           57888899999999999766544222  23456899999999999999999


Q ss_pred             CCcEEEEecCCC----eeEEEEec----------CCCEEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496          512 DKSMHIWSLKEG----KIVKTYTG----------NGGIFEVCWNKEGDKIAACFANHTVCVLDFR  562 (563)
Q Consensus       512 dg~v~iw~~~~~----~~~~~~~~----------~~~i~~l~w~~~g~~la~~~~~~~v~v~~~~  562 (563)
                      ||+|.+=.+...    +.--.|.-          --+|.+++|+|--..+|+|++||-|.+||..
T Consensus       198 eGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~  262 (323)
T KOG1036|consen  198 EGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLF  262 (323)
T ss_pred             cceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCc
Confidence            999987666544    11122221          1257899999999999999999999999974

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.89  E-value=4.5e-21  Score=180.09  Aligned_cols=277  Identities=19%  Similarity=0.313  Sum_probs=203.6

Q ss_pred             CCCCeEEEEECCCC--CEEEEEeCCCeEEEEEcCCc-----eeEeeccCCCCEEEEEeCCCC-CEEEEeeCCCcEEEEEC
Q 008496          273 KSKDVTTLDWNGEG--TLLATGSYDGQARIWSTNGD-----LKCTLSKHKGPIFSLKWNKKG-DYLLTGSCDKTAIVWDV  344 (563)
Q Consensus       273 ~~~~V~~l~~s~~g--~~l~sg~~dg~i~vw~~~~~-----~~~~~~~h~~~V~~l~~~~~~-~~l~s~s~D~~v~iwd~  344 (563)
                      ....|++++|+|..  +++++|..-|+|-+|+..++     -...+..|..+|.+|.|+|.+ ..+++.|.||+|++-|+
T Consensus       185 ~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~  264 (498)
T KOG4328|consen  185 TDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDF  264 (498)
T ss_pred             cccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeee
Confidence            45779999999964  58889999999999998532     345678899999999999966 67999999999999999


Q ss_pred             CCCceeEEeeec--ccCeEEEecCC-CceEEEEeCCCeEEEEEcCCCcc-eeeecCCCcceeEEEECCCCC-EEEEEeCC
Q 008496          345 KTEEWKQQFEFH--SGPTLDVDWRN-NVSFATSSTDNMIYVCKIGENRP-IKTFAGHQGEVNCVKWDPTGS-LLASCSDD  419 (563)
Q Consensus       345 ~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~d~~i~~~~~~~~~~-~~~~~~h~~~i~~~~~~~~~~-~las~s~d  419 (563)
                      ++......+...  ..-..++++.. +...+.+..=|...+||.+..+. ...+.-|...|++++++|... +|||||.|
T Consensus       265 ~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D  344 (498)
T KOG4328|consen  265 EGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLD  344 (498)
T ss_pred             cchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccC
Confidence            876433322221  11122333332 23344444445778898887654 555667888999999999765 58999999


Q ss_pred             CcEEEEeCCCCc----eeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCC----CCeEEEEecCCC
Q 008496          420 VTAKIWNMKQDK----YVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVE----LGKLLYSLNGHR  491 (563)
Q Consensus       420 g~i~iwd~~~~~----~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~----~~~~~~~~~~h~  491 (563)
                      ++++|||++.-.    ++.....|...|.+..|+|.+.         -|++-+.|..|||||..    .......+. |.
T Consensus       345 ~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~g---------tl~TT~~D~~IRv~dss~~sa~~~p~~~I~-Hn  414 (498)
T KOG4328|consen  345 QTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGG---------TLLTTCQDNEIRVFDSSCISAKDEPLGTIP-HN  414 (498)
T ss_pred             cceeeeehhhhcCCCCcceecccccceeeeeEEcCCCC---------ceEeeccCCceEEeecccccccCCccceee-cc
Confidence            999999987532    2334457999999999999875         37888999999999983    222222222 21


Q ss_pred             ------CCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEecC--CCEEE-EEEcCCCCEEEE-EECCCeEEEE
Q 008496          492 ------EPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGN--GGIFE-VCWNKEGDKIAA-CFANHTVCVL  559 (563)
Q Consensus       492 ------~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~~--~~i~~-l~w~~~g~~la~-~~~~~~v~v~  559 (563)
                            -......|.|+..+|++|-.-..|-|+|-..++++..+-..  ..|.+ ..|+|-+..+|+ +...|.|.||
T Consensus       415 ~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vf  492 (498)
T KOG4328|consen  415 NRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVF  492 (498)
T ss_pred             CcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEE
Confidence                  13456789999999999999999999999999888775332  13444 579999985555 4556777776

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.88  E-value=1.1e-21  Score=183.70  Aligned_cols=234  Identities=24%  Similarity=0.383  Sum_probs=181.9

Q ss_pred             CCCEEEEEeCCCeEEEEEcCCc----e------------------eEeeccCCCCEEEEEeCCCC-CEEEEeeCCCcEEE
Q 008496          285 EGTLLATGSYDGQARIWSTNGD----L------------------KCTLSKHKGPIFSLKWNKKG-DYLLTGSCDKTAIV  341 (563)
Q Consensus       285 ~g~~l~sg~~dg~i~vw~~~~~----~------------------~~~~~~h~~~V~~l~~~~~~-~~l~s~s~D~~v~i  341 (563)
                      -|+++|.|+.|..|.|||++=.    .                  .....+|+..|..|.|+..- +.|+|||.|.+|++
T Consensus       191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~l  270 (463)
T KOG0270|consen  191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKL  270 (463)
T ss_pred             CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEE
Confidence            4789999999999999996410    0                  01124699999999999865 56789999999999


Q ss_pred             EECCCCceeEEeeecccCeEEEecCCC--ceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCE-EEEEeC
Q 008496          342 WDVKTEEWKQQFEFHSGPTLDVDWRNN--VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSL-LASCSD  418 (563)
Q Consensus       342 wd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~-las~s~  418 (563)
                      ||+.++++..++..|...+..+.|.+.  ..+++++.|+++.+.|.+........-.-.+.|-.++|+|.... ++++++
T Consensus       271 WD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~td  350 (463)
T KOG0270|consen  271 WDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTD  350 (463)
T ss_pred             EEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEecC
Confidence            999999999999999999999999764  56789999999999998842221111123567889999997654 667788


Q ss_pred             CCcEEEEeCCCC-ceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeE--EEEecCCCCCEE
Q 008496          419 DVTAKIWNMKQD-KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKL--LYSLNGHREPVY  495 (563)
Q Consensus       419 dg~i~iwd~~~~-~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~--~~~~~~h~~~i~  495 (563)
                      ||+++-+|++.. +++.++++|.++|.+|++++...        .+|+++|.|+.|++|++.....  +..-.-.-+...
T Consensus       351 dG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p--------~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~  422 (463)
T KOG0270|consen  351 DGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTP--------GLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLH  422 (463)
T ss_pred             CceEEeeecCCCCCceeEEEeccCCcceEEecCCCC--------cceeeccccceEEEEeecCCCCccccccccccccee
Confidence            999999999875 88999999999999999987654        3799999999999999864332  222111122356


Q ss_pred             EEEEcCCC-CEEEEEeCCCcEEEEecCCCeeE
Q 008496          496 SLAFSPTG-EYLASGSLDKSMHIWSLKEGKIV  526 (563)
Q Consensus       496 ~l~~spdg-~~lasgs~dg~v~iw~~~~~~~~  526 (563)
                      |.++.|+- -+||.|+..+.++|||+.+...+
T Consensus       423 c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V  454 (463)
T KOG0270|consen  423 CFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV  454 (463)
T ss_pred             ecccCCCcceEEEecCccceEEEeecccChhH
Confidence            77778875 46788888889999999876543

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.88  E-value=8.5e-22  Score=189.70  Aligned_cols=265  Identities=22%  Similarity=0.343  Sum_probs=193.9

Q ss_pred             eeEecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCC
Q 008496          208 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT  287 (563)
Q Consensus       208 ~~~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~  287 (563)
                      ..+++.|.+.|.+++|+|....|++++.||++++|.+.....  ..   ...+..+..+.    .|..+|.|++.++.+.
T Consensus       287 k~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~--s~---~~~~epi~tfr----aH~gPVl~v~v~~n~~  357 (577)
T KOG0642|consen  287 KFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKK--SA---EKDVEPILTFR----AHEGPVLCVVVPSNGE  357 (577)
T ss_pred             eeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCC--cc---ccceeeeEEEe----cccCceEEEEecCCce
Confidence            348899999999999999999999999999999999954111  11   11122233333    3568899999999999


Q ss_pred             EEEEEeCCCeEEEEEcCC-----------ceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeec
Q 008496          288 LLATGSYDGQARIWSTNG-----------DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFH  356 (563)
Q Consensus       288 ~l~sg~~dg~i~vw~~~~-----------~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~  356 (563)
                      .+.+|+-||+|+.|++..           .+...+.||++.|+.+++|+...+|++|+.||++++|+...... ..|...
T Consensus       358 ~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~  436 (577)
T KOG0642|consen  358 HCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEP  436 (577)
T ss_pred             EEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCc
Confidence            999999999999996421           23457889999999999999999999999999999999765544 222211


Q ss_pred             --ccCeEEEecCCCc--eEEEEeCCCeEEEEEcCCCcceeeecC-------CCcceeEEEECCCCCEEEEEeCCCcEEEE
Q 008496          357 --SGPTLDVDWRNNV--SFATSSTDNMIYVCKIGENRPIKTFAG-------HQGEVNCVKWDPTGSLLASCSDDVTAKIW  425 (563)
Q Consensus       357 --~~~~~~~~~~~~~--~~~~~~~d~~i~~~~~~~~~~~~~~~~-------h~~~i~~~~~~~~~~~las~s~dg~i~iw  425 (563)
                        .+..+.+++....  ..+++..-+.--+.+......+..+..       ....++-+.++|.+.+.+++..|+.|+++
T Consensus       437 ~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~  516 (577)
T KOG0642|consen  437 KEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFF  516 (577)
T ss_pred             cccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecc
Confidence              1122233322211  111111111111222222222222221       12357889999999999999999999999


Q ss_pred             eCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCC
Q 008496          426 NMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHR  491 (563)
Q Consensus       426 d~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~  491 (563)
                      |..++.+++...+|...++++++.|+|.         +|++++.||.|++|.+....++.....|+
T Consensus       517 dn~~~~~l~s~~a~~~svtslai~~ng~---------~l~s~s~d~sv~l~kld~k~~~~es~~~r  573 (577)
T KOG0642|consen  517 DNKTGKILHSMVAHKDSVTSLAIDPNGP---------YLMSGSHDGSVRLWKLDVKTCVLESTAHR  573 (577)
T ss_pred             cccccccchheeeccceecceeecCCCc---------eEEeecCCceeehhhccchheeecccccc
Confidence            9999999999999999999999999885         89999999999999998888877776664

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.88  E-value=1.4e-20  Score=176.28  Aligned_cols=236  Identities=20%  Similarity=0.353  Sum_probs=181.3

Q ss_pred             EEEEeCC-------CCCEEEEeeCCCcEEEEECCCCcee---------------------EEeeecccCeEEEecCC--C
Q 008496          319 FSLKWNK-------KGDYLLTGSCDKTAIVWDVKTEEWK---------------------QQFEFHSGPTLDVDWRN--N  368 (563)
Q Consensus       319 ~~l~~~~-------~~~~l~s~s~D~~v~iwd~~~~~~~---------------------~~~~~~~~~~~~~~~~~--~  368 (563)
                      .|+.|..       .|++++.|..|..|.|||+.-...+                     ..-..|...++.+.|..  .
T Consensus       177 LC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~  256 (463)
T KOG0270|consen  177 LCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFR  256 (463)
T ss_pred             hhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccc
Confidence            5667743       3689999999999999997421100                     01124566667777754  3


Q ss_pred             ceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCC-CCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEEEE
Q 008496          369 VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT-GSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIR  447 (563)
Q Consensus       369 ~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~-~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~  447 (563)
                      ..+++++.|.+|.+||+.+++|..++..|.+.|.+++|+|. ...|++||.|+++++.|.+........-...+.|-.++
T Consensus       257 nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~  336 (463)
T KOG0270|consen  257 NVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVA  336 (463)
T ss_pred             eeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEE
Confidence            56899999999999999999999999999999999999996 56789999999999999984322211112356788999


Q ss_pred             EccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC-eEEEEecCCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEecCCC--
Q 008496          448 WSPTGSGTNNPNQQLILASASFDSTVKLWDVELG-KLLYSLNGHREPVYSLAFSPTG-EYLASGSLDKSMHIWSLKEG--  523 (563)
Q Consensus       448 ~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~h~~~i~~l~~spdg-~~lasgs~dg~v~iw~~~~~--  523 (563)
                      |.|...        +.++++..||+|+-+|+|+. +++++++.|..+|.+|++++.- .+|+|+|.|+.|++|++..-  
T Consensus       337 w~~~se--------~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~  408 (463)
T KOG0270|consen  337 WDPHSE--------NSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSP  408 (463)
T ss_pred             ecCCCc--------eeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCC
Confidence            988653        46788899999999999964 8999999999999999998864 57899999999999998643  


Q ss_pred             eeEEEEecC-CCEEEEEEcCCC-CEEEEEECCCeEEEEEee
Q 008496          524 KIVKTYTGN-GGIFEVCWNKEG-DKIAACFANHTVCVLDFR  562 (563)
Q Consensus       524 ~~~~~~~~~-~~i~~l~w~~~g-~~la~~~~~~~v~v~~~~  562 (563)
                      +.++..... +...+.+..|+- -.||+|+.++.++|||+-
T Consensus       409 ~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~  449 (463)
T KOG0270|consen  409 KSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIF  449 (463)
T ss_pred             cccccccccccceeecccCCCcceEEEecCccceEEEeecc
Confidence            333332222 234566777765 388889888889999963

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.87  E-value=2.8e-20  Score=166.87  Aligned_cols=276  Identities=16%  Similarity=0.310  Sum_probs=196.1

Q ss_pred             eEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEEeCCCe
Q 008496          218 VCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQ  297 (563)
Q Consensus       218 V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~dg~  297 (563)
                      ..||.||+-|.+||.|..||.+.|||+.+....                 .....|..+|++++||++|+.|+|++.|..
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~ia-----------------r~lsaH~~pi~sl~WS~dgr~LltsS~D~s   88 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIA-----------------RMLSAHVRPITSLCWSRDGRKLLTSSRDWS   88 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchh-----------------hhhhccccceeEEEecCCCCEeeeecCCce
Confidence            679999999999999999999999998763311                 112345678999999999999999999999


Q ss_pred             EEEEEcC-CceeEeeccCCCCEEEEEeCCCCC-EEEEeeCCCcEEEEECCCCceeEEeeecccC----e-EEEec-CCCc
Q 008496          298 ARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGD-YLLTGSCDKTAIVWDVKTEEWKQQFEFHSGP----T-LDVDW-RNNV  369 (563)
Q Consensus       298 i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~-~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~----~-~~~~~-~~~~  369 (563)
                      |.+||+. |.+...+ ...+||+...|+|... .++++-.+..-.+-++.... ...+......    + ....+ +...
T Consensus        89 i~lwDl~~gs~l~ri-rf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~-h~~Lp~d~d~dln~sas~~~fdr~g~  166 (405)
T KOG1273|consen   89 IKLWDLLKGSPLKRI-RFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPK-HSVLPKDDDGDLNSSASHGVFDRRGK  166 (405)
T ss_pred             eEEEeccCCCceeEE-EccCccceeeeccccCCeEEEEEecCCcEEEEecCCc-eeeccCCCccccccccccccccCCCC
Confidence            9999964 5555444 3578999999999654 34444445444444443311 1111111100    0 00112 2345


Q ss_pred             eEEEEeCCCeEEEEEcCCCcceeeecCCC-cceeEEEECCCCCEEEEEeCCCcEEEEeCCCC------cee---eeecc-
Q 008496          370 SFATSSTDNMIYVCKIGENRPIKTFAGHQ-GEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD------KYV---HDLRE-  438 (563)
Q Consensus       370 ~~~~~~~d~~i~~~~~~~~~~~~~~~~h~-~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~------~~~---~~~~~-  438 (563)
                      .+.++...|.+.+++..+.+.+..++-.. ..|..+.++..|+.|+.-+.|..||.|++..-      ..+   +.++. 
T Consensus       167 yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDv  246 (405)
T KOG1273|consen  167 YIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDV  246 (405)
T ss_pred             EEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHH
Confidence            67888899999999998888877776544 67889999999999999999999999987521      111   11110 


Q ss_pred             -cCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCC-CCEEEEEEcCCCCEEEEEeCCCcEE
Q 008496          439 -HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHR-EPVYSLAFSPTGEYLASGSLDKSMH  516 (563)
Q Consensus       439 -~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~-~~i~~l~~spdg~~lasgs~dg~v~  516 (563)
                       ....-.+++|+.+|        .++.|+......++||....|.++..+.|.. .....+.|+|-...|++- ..|.|+
T Consensus       247 VNk~~Wk~ccfs~dg--------eYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~  317 (405)
T KOG1273|consen  247 VNKLQWKKCCFSGDG--------EYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVY  317 (405)
T ss_pred             HhhhhhhheeecCCc--------cEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec-cCCceE
Confidence             01122445565554        3455656667889999999999999998876 567889999999988887 678999


Q ss_pred             EEecC
Q 008496          517 IWSLK  521 (563)
Q Consensus       517 iw~~~  521 (563)
                      ||...
T Consensus       318 iw~~~  322 (405)
T KOG1273|consen  318 IWAVV  322 (405)
T ss_pred             EEEee
Confidence            99875

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.87  E-value=6e-21  Score=182.29  Aligned_cols=272  Identities=18%  Similarity=0.288  Sum_probs=197.3

Q ss_pred             CCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEEe
Q 008496          214 HTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGS  293 (563)
Q Consensus       214 h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~  293 (563)
                      |..-|+||.|+.....+.+++.+..++-|++.+... ......+..+....|..+.....         -.....|+.++
T Consensus        13 ~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~-~~~~~p~df~pt~~h~~~rs~~~---------g~~~d~~~i~s   82 (737)
T KOG1524|consen   13 NSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSV-EVAKLPDDFVPTDMHLGGRSSGG---------GKGSDTLLICS   82 (737)
T ss_pred             cceeEEeecccccceEEEeccCceEEEeecccchhh-hhhhCCcccCCccccccccccCC---------CCCcceEEEEc
Confidence            555678999998887777766555566666644221 10100000111111111111110         01235688899


Q ss_pred             CCCeEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecCCCceEEE
Q 008496          294 YDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFAT  373 (563)
Q Consensus       294 ~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (563)
                      .||.+.+.+..++....+..|.++|.+-+|+|+|.-|++++.||.|++|. ++|-+..++.....++.++.|.++..-+.
T Consensus        83 ~DGkf~il~k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~p~S~~vl  161 (737)
T KOG1524|consen   83 NDGRFVILNKSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWAPNSNSIV  161 (737)
T ss_pred             CCceEEEecccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEECCCCCceE
Confidence            99999999999998889999999999999999999999999999999998 45544444445566899999987655444


Q ss_pred             EeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEEEEEccCCC
Q 008496          374 SSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGS  453 (563)
Q Consensus       374 ~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~  453 (563)
                      -...+.+++-.+..+..+..+++|.+-|.|++|++.+.++++|++|-..+|||.. +..+..-..|.-+|++++|.|+. 
T Consensus       162 ~c~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~ITSva~npd~-  239 (737)
T KOG1524|consen  162 FCQGGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAAEEYAITSVAFNPEK-  239 (737)
T ss_pred             EecCCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc-CcccccCChhccceeeeeecccc-
Confidence            4556677777777777777889999999999999999999999999999999965 44555667899999999999973 


Q ss_pred             CCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 008496          454 GTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWS  519 (563)
Q Consensus       454 ~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~  519 (563)
                               .++.+|.+ ++|+=           ....+.|..++|||||.-++.|...|.|.+=.
T Consensus       240 ---------~~~v~S~n-t~R~~-----------~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A~  284 (737)
T KOG1524|consen  240 ---------DYLLWSYN-TARFS-----------SPRVGSIFNLSWSADGTQATCGTSTGQLIVAY  284 (737)
T ss_pred             ---------ceeeeeee-eeeec-----------CCCccceEEEEEcCCCceeeccccCceEEEee
Confidence                     45666643 34311           12356799999999999999999999876543

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.87  E-value=3e-20  Score=174.63  Aligned_cols=290  Identities=19%  Similarity=0.325  Sum_probs=211.3

Q ss_pred             eEecCCCCceEEEEECCCC--CEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECC-C
Q 008496          209 TILEGHTSEVCACAWSPAG--SLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG-E  285 (563)
Q Consensus       209 ~~l~~h~~~V~~~~~sp~~--~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~-~  285 (563)
                      .+.+-|...|++++|+|..  +++|+|..-|.|-+|++.......      ..++ +      ..+|+.+|.+|.|+| +
T Consensus       180 ~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~------d~v~-~------f~~hs~~Vs~l~F~P~n  246 (498)
T KOG4328|consen  180 NVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDK------DGVY-L------FTPHSGPVSGLKFSPAN  246 (498)
T ss_pred             ceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCcc------CceE-E------eccCCccccceEecCCC
Confidence            3456688999999999974  589999999999999995211100      0011 1      135678999999999 4


Q ss_pred             CCEEEEEeCCCeEEEEEcCCceeE---eeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCce-eEEeeecccCeE
Q 008496          286 GTLLATGSYDGQARIWSTNGDLKC---TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEW-KQQFEFHSGPTL  361 (563)
Q Consensus       286 g~~l~sg~~dg~i~vw~~~~~~~~---~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~-~~~~~~~~~~~~  361 (563)
                      -..+++.++||+||+-|.++....   .+..-...+.++.|+.+...++.+..=|...+||+++..- ...+..|...+.
T Consensus       247 ~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~  326 (498)
T KOG4328|consen  247 TSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKIT  326 (498)
T ss_pred             hhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccc
Confidence            578999999999999998865433   2222344567788888888888888778999999987653 445566666665


Q ss_pred             EEec--CCCceEEEEeCCCeEEEEEcCCCc----ceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCC----CCc
Q 008496          362 DVDW--RNNVSFATSSTDNMIYVCKIGENR----PIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMK----QDK  431 (563)
Q Consensus       362 ~~~~--~~~~~~~~~~~d~~i~~~~~~~~~----~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~----~~~  431 (563)
                      .++.  .....+++++.|++.++||++.-.    |+.....|...|+++.|||++-.|+|.+.|..|||||..    ...
T Consensus       327 sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~  406 (498)
T KOG4328|consen  327 SVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDE  406 (498)
T ss_pred             eeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCC
Confidence            5555  456789999999999999987532    445556799999999999998889999999999999973    222


Q ss_pred             eeeeecccCC------CEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCC-CCEEE-EEEcCCC
Q 008496          432 YVHDLREHSK------EIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHR-EPVYS-LAFSPTG  503 (563)
Q Consensus       432 ~~~~~~~~~~------~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~-~~i~~-l~~spdg  503 (563)
                      +...+. |..      ......|.|+.         .++++|-.-..|-|+|-..++.+..+..-. ..|.+ ..|+|-+
T Consensus       407 p~~~I~-Hn~~t~RwlT~fKA~W~P~~---------~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~  476 (498)
T KOG4328|consen  407 PLGTIP-HNNRTGRWLTPFKAAWDPDY---------NLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMR  476 (498)
T ss_pred             ccceee-ccCcccccccchhheeCCCc---------cEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccc
Confidence            222222 221      23445777754         378899998999999999999888764432 35555 4899998


Q ss_pred             CEE-EEEeCCCcEEEEecC
Q 008496          504 EYL-ASGSLDKSMHIWSLK  521 (563)
Q Consensus       504 ~~l-asgs~dg~v~iw~~~  521 (563)
                      ..+ |.|+..|.|+||.-+
T Consensus       477 ~~~~aG~~s~Gki~vft~k  495 (498)
T KOG4328|consen  477 DTLAAGGNSSGKIYVFTNK  495 (498)
T ss_pred             cceeccCCccceEEEEecC
Confidence            844 455567888888654

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.87  E-value=7.2e-18  Score=172.62  Aligned_cols=327  Identities=29%  Similarity=0.577  Sum_probs=249.6

Q ss_pred             eeEecCCC-CceEEEEE-CCCCC-EEEEeeC-CCcEEEEecCC-CCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEE
Q 008496          208 VTILEGHT-SEVCACAW-SPAGS-LLASGSG-DSTARIWTIAD-GTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDW  282 (563)
Q Consensus       208 ~~~l~~h~-~~V~~~~~-sp~~~-~latgs~-D~~i~iW~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~  282 (563)
                      ...+.++. ..+..+.+ ++++. .++..+. |+.+++|++.. ..             ....    ...+...|..++|
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-------------~~~~----~~~~~~~v~~~~~  163 (466)
T COG2319         101 IKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGK-------------LIRT----LEGHSESVTSLAF  163 (466)
T ss_pred             EEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecCCCe-------------EEEE----EecCcccEEEEEE
Confidence            34445533 36666666 88887 5555454 99999999864 11             0111    1234567889999


Q ss_pred             CCCCCEEEEEeC-CCeEEEEEcCC-ceeEeeccCCCCEEEEEeCCCCC-EEEEeeCCCcEEEEECCCCceeE-Eeeeccc
Q 008496          283 NGEGTLLATGSY-DGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGD-YLLTGSCDKTAIVWDVKTEEWKQ-QFEFHSG  358 (563)
Q Consensus       283 s~~g~~l~sg~~-dg~i~vw~~~~-~~~~~~~~h~~~V~~l~~~~~~~-~l~s~s~D~~v~iwd~~~~~~~~-~~~~~~~  358 (563)
                      +|++..+++++. |+.+++|+... .....+.+|...|.+++|+|++. .+++++.|+++++||...+.... .+..|..
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~  243 (466)
T COG2319         164 SPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSD  243 (466)
T ss_pred             CCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCc
Confidence            999999999885 99999999874 66777888999999999999998 55666999999999988777777 5666665


Q ss_pred             CeEEEecCCC-ceEEEEeCCCeEEEEEcCCCcc-eeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeee
Q 008496          359 PTLDVDWRNN-VSFATSSTDNMIYVCKIGENRP-IKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDL  436 (563)
Q Consensus       359 ~~~~~~~~~~-~~~~~~~~d~~i~~~~~~~~~~-~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~  436 (563)
                      .. ...|..+ ..+++++.|+.+++|+...... +..+.+|...+.++.|+|++..+++++.|+.+++|+..+.......
T Consensus       244 ~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  322 (466)
T COG2319         244 SV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSL  322 (466)
T ss_pred             ce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEe
Confidence            53 2245444 4677899999999999986664 5555688899999999998888888999999999999888766665


Q ss_pred             c--ccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEE-EeCCC
Q 008496          437 R--EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLAS-GSLDK  513 (563)
Q Consensus       437 ~--~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~las-gs~dg  513 (563)
                      .  .|...+..+.| +..       ...+..++..|+.+++|++............ ..+..+.+++ ...+.. ++.++
T Consensus       323 ~~~~~~~~~~~~~~-~~~-------~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~  392 (466)
T COG2319         323 TLKGHEGPVSSLSF-SPD-------GSLLVSGGSDDGTIRLWDLRTGKPLKTLEGH-SNVLSVSFSP-DGRVVSSGSTDG  392 (466)
T ss_pred             eecccCCceEEEEE-CCC-------CCEEEEeecCCCcEEeeecCCCceeEEecCC-ceEEEEEECC-CCCEEEEecCCC
Confidence            5  77778999998 522       0124444478899999999877733333322 2388999999 544444 78899


Q ss_pred             cEEEEecCCCeeEEEEecC-CCEEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496          514 SMHIWSLKEGKIVKTYTGN-GGIFEVCWNKEGDKIAACFANHTVCVLDFR  562 (563)
Q Consensus       514 ~v~iw~~~~~~~~~~~~~~-~~i~~l~w~~~g~~la~~~~~~~v~v~~~~  562 (563)
                      .+.+|+............. ..+....+++++..++.+..+..+.+|+..
T Consensus       393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  442 (466)
T COG2319         393 TVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLK  442 (466)
T ss_pred             ceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEecCCCcEEEEecc
Confidence            9999999988877776666 788999999999999998899999999864

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.86  E-value=2.8e-20  Score=181.41  Aligned_cols=285  Identities=22%  Similarity=0.300  Sum_probs=199.6

Q ss_pred             EEEEECCC---CCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEEeCC
Q 008496          219 CACAWSPA---GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYD  295 (563)
Q Consensus       219 ~~~~~sp~---~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~d  295 (563)
                      +++.|++.   ..+||.+-.||.|.++|.......       .....++..    ..|...|-.+.|-|....|++++.|
T Consensus        53 f~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr-------~ee~~lk~~----~aH~nAifDl~wapge~~lVsasGD  121 (720)
T KOG0321|consen   53 FADSFSAAPNKEHILAVADEDGGIILFDTKSIVFR-------LEERQLKKP----LAHKNAIFDLKWAPGESLLVSASGD  121 (720)
T ss_pred             ccccccCCCCccceEEEecCCCceeeecchhhhcc-------hhhhhhccc----ccccceeEeeccCCCceeEEEccCC
Confidence            45677663   358999999999999997542211       000011111    2345679999999977889999999


Q ss_pred             CeEEEEEcCCc-eeE--eeccCCCCEEEEEeCCCC-CEEEEeeCCCcEEEEECCCCce-------eEEeeec--------
Q 008496          296 GQARIWSTNGD-LKC--TLSKHKGPIFSLKWNKKG-DYLLTGSCDKTAIVWDVKTEEW-------KQQFEFH--------  356 (563)
Q Consensus       296 g~i~vw~~~~~-~~~--~~~~h~~~V~~l~~~~~~-~~l~s~s~D~~v~iwd~~~~~~-------~~~~~~~--------  356 (563)
                      .++++||+.+. +..  .+.+|++.|.+++|.|.. ..|++|+.||.+.|||++-...       ...+..|        
T Consensus       122 sT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpsk  201 (720)
T KOG0321|consen  122 STIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSK  201 (720)
T ss_pred             ceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCc
Confidence            99999998753 333  478999999999999976 4688999999999999864320       0011111        


Q ss_pred             ------------cc----CeEEEecCCCceEEEEeC-CCeEEEEEcCCCcc--------eeeecCC---CcceeEEEECC
Q 008496          357 ------------SG----PTLDVDWRNNVSFATSST-DNMIYVCKIGENRP--------IKTFAGH---QGEVNCVKWDP  408 (563)
Q Consensus       357 ------------~~----~~~~~~~~~~~~~~~~~~-d~~i~~~~~~~~~~--------~~~~~~h---~~~i~~~~~~~  408 (563)
                                  ..    .|..+-+.++..+|+++. |+.|+|||++....        +..+.-|   .-.+.++..+.
T Consensus       202 p~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDs  281 (720)
T KOG0321|consen  202 PLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDS  281 (720)
T ss_pred             hhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecC
Confidence                        11    133456678888888887 99999999986532        2223333   22477888888


Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCc--eeeeecccCCCEEE--EEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeE-
Q 008496          409 TGSLLASCSDDVTAKIWNMKQDK--YVHDLREHSKEIYT--IRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKL-  483 (563)
Q Consensus       409 ~~~~las~s~dg~i~iwd~~~~~--~~~~~~~~~~~i~~--~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~-  483 (563)
                      .|.+|...+.|+.|.+|++.+..  ++..+.++...-..  -..+|++.         +|++|+.|...++|.+.+.+. 
T Consensus       282 sGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~---------~l~SgSsd~~ayiw~vs~~e~~  352 (720)
T KOG0321|consen  282 SGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDC---------SLLSGSSDEQAYIWVVSSPEAP  352 (720)
T ss_pred             CCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCc---------eEeccCCCcceeeeeecCccCC
Confidence            88877666669999999987543  23333333221111  12345543         799999999999999987554 


Q ss_pred             EEEecCCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEecCCC
Q 008496          484 LYSLNGHREPVYSLAFSPTG-EYLASGSLDKSMHIWSLKEG  523 (563)
Q Consensus       484 ~~~~~~h~~~i~~l~~spdg-~~lasgs~dg~v~iw~~~~~  523 (563)
                      ...+.+|...|++++|.|.- .-+|+++.|.+++||++.++
T Consensus       353 ~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~  393 (720)
T KOG0321|consen  353 PALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG  393 (720)
T ss_pred             hhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence            55678999999999998753 45777799999999999764

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.86  E-value=4e-20  Score=180.35  Aligned_cols=268  Identities=23%  Similarity=0.349  Sum_probs=193.0

Q ss_pred             CCCEEEEEeCCCeEEEEEcCCce-------eEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEE--eee
Q 008496          285 EGTLLATGSYDGQARIWSTNGDL-------KCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQ--FEF  355 (563)
Q Consensus       285 ~g~~l~sg~~dg~i~vw~~~~~~-------~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~--~~~  355 (563)
                      ...+|+.+..||.|.+++.....       ......|.+.|+.+.|-|....|++++.|.++++||+.+..+...  +..
T Consensus        63 ~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~G  142 (720)
T KOG0321|consen   63 KEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLG  142 (720)
T ss_pred             ccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecc
Confidence            34689999999999999975321       234567999999999999777899999999999999999888766  788


Q ss_pred             cccCeEEEecC--CCceEEEEeCCCeEEEEEcCCCc--------------------c-------eeeecCCCcceeE---
Q 008496          356 HSGPTLDVDWR--NNVSFATSSTDNMIYVCKIGENR--------------------P-------IKTFAGHQGEVNC---  403 (563)
Q Consensus       356 ~~~~~~~~~~~--~~~~~~~~~~d~~i~~~~~~~~~--------------------~-------~~~~~~h~~~i~~---  403 (563)
                      |.+.+-.+++.  +...|++++.||.|.+||++...                    |       +.....|.+.|.+   
T Consensus       143 H~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvT  222 (720)
T KOG0321|consen  143 HTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVT  222 (720)
T ss_pred             cccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeE
Confidence            88888777774  56789999999999999986432                    1       1111234444544   


Q ss_pred             EEECCCCCEEEEEeC-CCcEEEEeCCCCceeee--------eccc---CCCEEEEEEccCCCCCCCCCCcEEEEEEeCCC
Q 008496          404 VKWDPTGSLLASCSD-DVTAKIWNMKQDKYVHD--------LREH---SKEIYTIRWSPTGSGTNNPNQQLILASASFDS  471 (563)
Q Consensus       404 ~~~~~~~~~las~s~-dg~i~iwd~~~~~~~~~--------~~~~---~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg  471 (563)
                      +-+..|...||+++. |+.|+|||++.......        +..|   .-.+.++.....|.        .++|+|. |+
T Consensus       223 vv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt--------~L~AsCt-D~  293 (720)
T KOG0321|consen  223 VVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGT--------YLFASCT-DN  293 (720)
T ss_pred             EEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCC--------eEEEEec-CC
Confidence            556678889999998 99999999986543221        1122   11234444433332        4566665 99


Q ss_pred             eEEEEeCCCC--eEEEEecCCCCCEE--EEEEcCCCCEEEEEeCCCcEEEEecCCCee-EEEEecC-CCEEEEEEcCCC-
Q 008496          472 TVKLWDVELG--KLLYSLNGHREPVY--SLAFSPTGEYLASGSLDKSMHIWSLKEGKI-VKTYTGN-GGIFEVCWNKEG-  544 (563)
Q Consensus       472 ~i~iwd~~~~--~~~~~~~~h~~~i~--~l~~spdg~~lasgs~dg~v~iw~~~~~~~-~~~~~~~-~~i~~l~w~~~g-  544 (563)
                      +|++||+..-  ..+..+.++...-.  .-..|||+.+|++|+.|...+||.+.+-.. +..+.++ -.|+.++|.|.- 
T Consensus       294 sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~  373 (720)
T KOG0321|consen  294 SIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSAT  373 (720)
T ss_pred             cEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccC
Confidence            9999998753  33445555432211  224699999999999999999999986543 2223332 248899999854 


Q ss_pred             CEEEEEECCCeEEEEEe
Q 008496          545 DKIAACFANHTVCVLDF  561 (563)
Q Consensus       545 ~~la~~~~~~~v~v~~~  561 (563)
                      ..+|+|+.|-++.||++
T Consensus       374 t~v~TcSdD~~~kiW~l  390 (720)
T KOG0321|consen  374 TPVATCSDDFRVKIWRL  390 (720)
T ss_pred             CCceeeccCcceEEEec
Confidence            57788899999999986

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.86  E-value=3.6e-21  Score=199.84  Aligned_cols=275  Identities=24%  Similarity=0.447  Sum_probs=209.6

Q ss_pred             EEEECCCCC-EEEEE----------eCCCeEEEEEcC---Cc--ee--EeeccCCCCEEEEEeCCCCCE----EEEeeCC
Q 008496          279 TLDWNGEGT-LLATG----------SYDGQARIWSTN---GD--LK--CTLSKHKGPIFSLKWNKKGDY----LLTGSCD  336 (563)
Q Consensus       279 ~l~~s~~g~-~l~sg----------~~dg~i~vw~~~---~~--~~--~~~~~h~~~V~~l~~~~~~~~----l~s~s~D  336 (563)
                      .++|+|.+. ++++|          +.+.++-||..+   ..  ++  ..+ .....-+.|+|.+.|..    |+.|..|
T Consensus        11 ~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~-~s~~rF~kL~W~~~g~~~~GlIaGG~ed   89 (1049)
T KOG0307|consen   11 TFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSL-QSSNRFNKLAWGSYGSHSHGLIAGGLED   89 (1049)
T ss_pred             eEEecCCCchhhHHHhhhhccccccccccccceeeecccCccccccccccc-cccccceeeeecccCCCccceeeccccC
Confidence            468999886 55544          224455666543   11  11  111 12345678999988876    7788889


Q ss_pred             CcEEEEECCCC------ceeEEeeecccCeEEEecCC--CceEEEEeCCCeEEEEEcCCCcceeeec--CCCcceeEEEE
Q 008496          337 KTAIVWDVKTE------EWKQQFEFHSGPTLDVDWRN--NVSFATSSTDNMIYVCKIGENRPIKTFA--GHQGEVNCVKW  406 (563)
Q Consensus       337 ~~v~iwd~~~~------~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~i~~~~~~~~~~~~~~~--~h~~~i~~~~~  406 (563)
                      |.|.+||....      ..+.++..|.++|..+++..  ...+|+|+.||.|++||+.....-.++.  .-.+.|.+++|
T Consensus        90 G~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsW  169 (1049)
T KOG0307|consen   90 GNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSW  169 (1049)
T ss_pred             CceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEecc
Confidence            99999997542      34556778999999998864  4578999999999999997643222221  13467999999


Q ss_pred             CCC-CCEEEEEeCCCcEEEEeCCCCceeeeecccCC--CEEEEEEccCCCCCCCCCCcEEEEEEeCC---CeEEEEeCCC
Q 008496          407 DPT-GSLLASCSDDVTAKIWNMKQDKYVHDLREHSK--EIYTIRWSPTGSGTNNPNQQLILASASFD---STVKLWDVEL  480 (563)
Q Consensus       407 ~~~-~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~--~i~~~~~~p~~~~~~~~~~~~~l~s~s~d---g~i~iwd~~~  480 (563)
                      +.. ...||+++.+|.+.|||++..+.+..+..+..  .+..+.|+|+...        .|++++.|   -.|.+||+|.
T Consensus       170 NrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aT--------ql~~As~dd~~PviqlWDlR~  241 (1049)
T KOG0307|consen  170 NRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHAT--------QLLVASGDDSAPVIQLWDLRF  241 (1049)
T ss_pred             chhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCce--------eeeeecCCCCCceeEeecccc
Confidence            875 45689999999999999999988887776655  4678999998752        34444444   3699999985


Q ss_pred             C-eEEEEecCCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEecCCCeeEEEEec-CCCEEEEEEcCCCC-EEEEEECCCeE
Q 008496          481 G-KLLYSLNGHREPVYSLAFSPTG-EYLASGSLDKSMHIWSLKEGKIVKTYTG-NGGIFEVCWNKEGD-KIAACFANHTV  556 (563)
Q Consensus       481 ~-~~~~~~~~h~~~i~~l~~spdg-~~lasgs~dg~v~iw~~~~~~~~~~~~~-~~~i~~l~w~~~g~-~la~~~~~~~v  556 (563)
                      . ..+..+.+|...|.++.|++.+ .+|+|++.|++|.+|+.++|+++..+.. ...++++.|.|..- .+|+++-+|.|
T Consensus       242 assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI  321 (1049)
T KOG0307|consen  242 ASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKI  321 (1049)
T ss_pred             cCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccce
Confidence            4 4567788999999999999976 8999999999999999999999998865 34689999999875 88889999999


Q ss_pred             EEEEee
Q 008496          557 CVLDFR  562 (563)
Q Consensus       557 ~v~~~~  562 (563)
                      .|+.+.
T Consensus       322 ~I~sl~  327 (1049)
T KOG0307|consen  322 SIYSLQ  327 (1049)
T ss_pred             eeeeee
Confidence            999874

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.85  E-value=1.8e-19  Score=176.30  Aligned_cols=275  Identities=19%  Similarity=0.345  Sum_probs=203.9

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCeEEEEEcC-CceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEe
Q 008496          275 KDVTTLDWNGEGTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQF  353 (563)
Q Consensus       275 ~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~  353 (563)
                      ..|..++|-|||..|+.+.. ..+.+||++ |.+..++.+|+..|++++|+.+|+.++||++|+.|.+|+..-....+  
T Consensus        13 hci~d~afkPDGsqL~lAAg-~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~Lk--   89 (1081)
T KOG1538|consen   13 HCINDIAFKPDGTQLILAAG-SRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILK--   89 (1081)
T ss_pred             cchheeEECCCCceEEEecC-CEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccceee--
Confidence            36899999999999888765 468899975 77889999999999999999999999999999999999865433322  


Q ss_pred             eecccCeEEEecCCC-ceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCce
Q 008496          354 EFHSGPTLDVDWRNN-VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKY  432 (563)
Q Consensus       354 ~~~~~~~~~~~~~~~-~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~  432 (563)
                      -.|...+.++.+.+- ..+++|+... .-+|...... +...+ ....+.+++|..||++|+.|-.||+|.|-+-.....
T Consensus        90 YSH~D~IQCMsFNP~~h~LasCsLsd-FglWS~~qK~-V~K~k-ss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek  166 (1081)
T KOG1538|consen   90 YSHNDAIQCMSFNPITHQLASCSLSD-FGLWSPEQKS-VSKHK-SSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEK  166 (1081)
T ss_pred             eccCCeeeEeecCchHHHhhhcchhh-ccccChhhhh-HHhhh-hheeEEEeeecCCCcEEEEeccCceEEeecCCCCcc
Confidence            235667777777654 3445554321 2234433222 11111 234688999999999999999999999876433222


Q ss_pred             e--eeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEe
Q 008496          433 V--HDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGS  510 (563)
Q Consensus       433 ~--~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs  510 (563)
                      +  ..--+...+|.+++|+|...    +...-+++......++.++.+. |+.+..-+...-.-.|+++-|+|.|+..|+
T Consensus       167 ~~I~Rpgg~Nspiwsi~~~p~sg----~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~NGEy~LiGG  241 (1081)
T KOG1538|consen  167 VKIERPGGSNSPIWSICWNPSSG----EGRNDILAVADWGQTLSFYQLS-GKQIGKDRALNFDPCCISYFTNGEYILLGG  241 (1081)
T ss_pred             eEEeCCCCCCCCceEEEecCCCC----CCccceEEEEeccceeEEEEec-ceeecccccCCCCchhheeccCCcEEEEcc
Confidence            2  22224678999999999753    1222378888999999998875 666553333333447899999999999999


Q ss_pred             CCCcEEEEecCCCeeEEEEec-CCCEEEEEEcCCCCEEEEEECCCeEEEEEe
Q 008496          511 LDKSMHIWSLKEGKIVKTYTG-NGGIFEVCWNKEGDKIAACFANHTVCVLDF  561 (563)
Q Consensus       511 ~dg~v~iw~~~~~~~~~~~~~-~~~i~~l~w~~~g~~la~~~~~~~v~v~~~  561 (563)
                      .|+.+++|. +.|-.+.+... ...|+.++-.|.|+.+++|..||+++-||+
T Consensus       242 sdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl  292 (1081)
T KOG1538|consen  242 SDKQLSLFT-RDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNL  292 (1081)
T ss_pred             CCCceEEEe-ecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhh
Confidence            999999996 45666666533 557999999999999999999999998875

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.85  E-value=2.1e-19  Score=174.07  Aligned_cols=278  Identities=22%  Similarity=0.341  Sum_probs=209.7

Q ss_pred             ccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCc-eeEeeccCCCCEEEEEeCCCCCE-EEEeeCCCcEEEEECCCCc
Q 008496          271 NEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGD-LKCTLSKHKGPIFSLKWNKKGDY-LLTGSCDKTAIVWDVKTEE  348 (563)
Q Consensus       271 ~~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~-~~~~~~~h~~~V~~l~~~~~~~~-l~s~s~D~~v~iwd~~~~~  348 (563)
                      .+|.+.|.++...|.|.+|++|+.||++|||.+.+. .+.++ ...+.|.+++|+|.+.. +++++...++.|-+..-|.
T Consensus       397 rGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~-~~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~  475 (733)
T KOG0650|consen  397 RGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTV-QFDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIFGD  475 (733)
T ss_pred             eccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEE-eecceeEEEEecCCCCceeEEEEecCceEEeCccccc
Confidence            356788999999999999999999999999997644 33333 34568999999998754 4444445555555432221


Q ss_pred             e-------------------------------------eEEeeecccCeEEEecCCC-ceEEEEe---CCCeEEEEEcCC
Q 008496          349 W-------------------------------------KQQFEFHSGPTLDVDWRNN-VSFATSS---TDNMIYVCKIGE  387 (563)
Q Consensus       349 ~-------------------------------------~~~~~~~~~~~~~~~~~~~-~~~~~~~---~d~~i~~~~~~~  387 (563)
                      .                                     +...-.|..++..+.|+.. ..|++..   ....|.+.++..
T Consensus       476 ~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK  555 (733)
T KOG0650|consen  476 RLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSK  555 (733)
T ss_pred             hhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEeccc
Confidence            0                                     0111223445677888654 3444443   335688888877


Q ss_pred             CcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEE
Q 008496          388 NRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASA  467 (563)
Q Consensus       388 ~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~  467 (563)
                      .+....|+-..+.|.++.|+|...+|+.++. ..|||||+.....+..+......|.+++.+|.|.         -|+.|
T Consensus       556 ~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GD---------nli~g  625 (733)
T KOG0650|consen  556 RKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGD---------NLILG  625 (733)
T ss_pred             ccccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCCeeeeeeeecCCCC---------eEEEe
Confidence            6666666666778999999999999888876 4799999998888887777788899999999875         36779


Q ss_pred             eCCCeEEEEeCCCC-eEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCC------Ce---eEEEEec-----C
Q 008496          468 SFDSTVKLWDVELG-KLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKE------GK---IVKTYTG-----N  532 (563)
Q Consensus       468 s~dg~i~iwd~~~~-~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~------~~---~~~~~~~-----~  532 (563)
                      +.|+.+..+|+..+ +...++.-|...+++++|++--.++|+|+.||++.||.-.-      .-   .++.+.+     .
T Consensus       626 s~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~  705 (733)
T KOG0650|consen  626 SYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTND  705 (733)
T ss_pred             cCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecc
Confidence            99999999999865 45567888999999999999999999999999999986321      11   2333433     3


Q ss_pred             CCEEEEEEcCCCCEEEEEECCCeEEEE
Q 008496          533 GGIFEVCWNKEGDKIAACFANHTVCVL  559 (563)
Q Consensus       533 ~~i~~l~w~~~g~~la~~~~~~~v~v~  559 (563)
                      .+|.+..|+|.--+|.+++.||++++|
T Consensus       706 ~gVLd~~wHP~qpWLfsAGAd~tirlf  732 (733)
T KOG0650|consen  706 LGVLDTIWHPRQPWLFSAGADGTIRLF  732 (733)
T ss_pred             cceEeecccCCCceEEecCCCceEEee
Confidence            568999999999999999999999987

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.85  E-value=9.1e-20  Score=161.71  Aligned_cols=256  Identities=26%  Similarity=0.427  Sum_probs=185.5

Q ss_pred             eEecCCCCceEEEEECCC-CCEEEEeeC---C----CcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEE
Q 008496          209 TILEGHTSEVCACAWSPA-GSLLASGSG---D----STARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTL  280 (563)
Q Consensus       209 ~~l~~h~~~V~~~~~sp~-~~~latgs~---D----~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l  280 (563)
                      .+|..|.++|..++-+|. .++|+|.-.   |    ..+.||.++.....       .+...+..+......+.+.|.|+
T Consensus        57 kvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~-------S~~~tlE~v~~Ldteavg~i~cv  129 (370)
T KOG1007|consen   57 KVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQ-------SNSSTLECVASLDTEAVGKINCV  129 (370)
T ss_pred             hhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCc-------cccchhhHhhcCCHHHhCceeeE
Confidence            356778899999999996 467777644   2    24789998753211       11111111111122334579999


Q ss_pred             EECCCCCEEEEEeCCCeEEEEEcCCcee--Eee-----ccCCCCEEEEEeCC--CCCEEEEeeCCCcEEEEECCCCceeE
Q 008496          281 DWNGEGTLLATGSYDGQARIWSTNGDLK--CTL-----SKHKGPIFSLKWNK--KGDYLLTGSCDKTAIVWDVKTEEWKQ  351 (563)
Q Consensus       281 ~~s~~g~~l~sg~~dg~i~vw~~~~~~~--~~~-----~~h~~~V~~l~~~~--~~~~l~s~s~D~~v~iwd~~~~~~~~  351 (563)
                      .|.|++..+++-. |..|.+|+.+....  ..+     ..|+...++-+|+|  +|+.+++. .|+++..||+++.....
T Consensus       130 ew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~  207 (370)
T KOG1007|consen  130 EWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKNN  207 (370)
T ss_pred             EEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEEEEEccchhhhc
Confidence            9999999988765 88999999764322  211     23666788999998  67777664 58999999999764322


Q ss_pred             EeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCC-EEEEEeCCCcEEEEeCCC-
Q 008496          352 QFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGS-LLASCSDDVTAKIWNMKQ-  429 (563)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~-~las~s~dg~i~iwd~~~-  429 (563)
                      .+                                        -.+|...|..+.|+|+.+ +||||++||.|||||.+. 
T Consensus       208 sI----------------------------------------~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~t  247 (370)
T KOG1007|consen  208 SI----------------------------------------EDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKT  247 (370)
T ss_pred             ch----------------------------------------hhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCC
Confidence            11                                        135777788999999876 579999999999999975 


Q ss_pred             CceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC-----------------------------
Q 008496          430 DKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL-----------------------------  480 (563)
Q Consensus       430 ~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~-----------------------------  480 (563)
                      ..++.++.+|...+.+++|.|...        -++++|+.|..|.+|....                             
T Consensus       248 k~pv~el~~HsHWvW~VRfn~~hd--------qLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~  319 (370)
T KOG1007|consen  248 KFPVQELPGHSHWVWAVRFNPEHD--------QLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQ  319 (370)
T ss_pred             CccccccCCCceEEEEEEecCccc--------eEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhccccc
Confidence            457889999999999999988643        3788999999999996431                             


Q ss_pred             CeEEEEecCCCCCEEEEEEcCCCCEE-EEEeCCCcEEEEecC
Q 008496          481 GKLLYSLNGHREPVYSLAFSPTGEYL-ASGSLDKSMHIWSLK  521 (563)
Q Consensus       481 ~~~~~~~~~h~~~i~~l~~spdg~~l-asgs~dg~v~iw~~~  521 (563)
                      ...+.++..|...|++++||.-..++ |+-|.||+|.|=.+.
T Consensus       320 dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~  361 (370)
T KOG1007|consen  320 DGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVP  361 (370)
T ss_pred             ccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence            01234566799999999998876664 788999999887765

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.85  E-value=2.2e-19  Score=166.59  Aligned_cols=293  Identities=21%  Similarity=0.329  Sum_probs=195.3

Q ss_pred             eEecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCc---CCCCCCCceEEEEEeeecccccCCCCeEEEEECCC
Q 008496          209 TILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSN---GGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE  285 (563)
Q Consensus       209 ~~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~  285 (563)
                      ..|..|...|++|.|+|+|.+||||+.+|.+.+|...+....   ..+...+....+.+...    .+..+|..++|+|+
T Consensus        59 s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr----~h~~diydL~Ws~d  134 (434)
T KOG1009|consen   59 SSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLR----GHRDDIYDLAWSPD  134 (434)
T ss_pred             ecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEec----ccccchhhhhccCC
Confidence            467889999999999999999999999999999987642110   00111111122233332    35688999999999


Q ss_pred             CCEEEEEeCCCeEEEEEcC-CceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEe
Q 008496          286 GTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVD  364 (563)
Q Consensus       286 g~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~  364 (563)
                      +.++++|+.|..+++||+. |.+...+..|...|..++|.|.++++++-+.|...+.+.+...........   .++   
T Consensus       135 ~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~---~~m---  208 (434)
T KOG1009|consen  135 SNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGL---DIM---  208 (434)
T ss_pred             CceeeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeee---eEe---
Confidence            9999999999999999986 678888999999999999999999999999999777776655443332221   000   


Q ss_pred             cCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeC----CCcE-----EEEeCC-CCceee
Q 008496          365 WRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD----DVTA-----KIWNMK-QDKYVH  434 (563)
Q Consensus       365 ~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~----dg~i-----~iwd~~-~~~~~~  434 (563)
                            .+-.+..+.-..+.+-.....      ......++|+|+|.+|++.+.    .+.+     .+++-+ ..+++.
T Consensus       209 ------~~~~~~~~e~~s~rLfhDeTl------ksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~  276 (434)
T KOG1009|consen  209 ------PAKAFNEREGKSTRLFHDETL------KSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAA  276 (434)
T ss_pred             ------eecccCCCCcceeeeeecCch------hhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCcee
Confidence                  000011110011111001111      112456889999999987542    2222     333322 223445


Q ss_pred             eecccCCCEEEEEEccCCCC----C------CCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEe-cCCCCCEEEEEEcCCC
Q 008496          435 DLREHSKEIYTIRWSPTGSG----T------NNPNQQLILASASFDSTVKLWDVELGKLLYSL-NGHREPVYSLAFSPTG  503 (563)
Q Consensus       435 ~~~~~~~~i~~~~~~p~~~~----~------~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~~h~~~i~~l~~spdg  503 (563)
                      .+.....+...++++|--..    .      ..| -.+++|.+.. ..|.|||.++..+++.+ +-|-.+|+.++||+||
T Consensus       277 ~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lp-yrlvfaiAt~-~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg  354 (434)
T KOG1009|consen  277 RLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLP-YRLVFAIATK-NSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDG  354 (434)
T ss_pred             ecCCCCcceEEEEeeeeEEEeccccccccccccc-cceEEEEeec-ceEEEeccccccceEEEeeeeeeeecceeecCCC
Confidence            55556667777777763210    0      011 1234555554 57999999987777665 4588899999999999


Q ss_pred             CEEEEEeCCCcEEEEecCCCee
Q 008496          504 EYLASGSLDKSMHIWSLKEGKI  525 (563)
Q Consensus       504 ~~lasgs~dg~v~iw~~~~~~~  525 (563)
                      .+|+..|.||...+-.++.+++
T Consensus       355 ~~l~vSS~DGyCS~vtfe~~el  376 (434)
T KOG1009|consen  355 SVLLVSSTDGFCSLVTFEPWEL  376 (434)
T ss_pred             cEEEEeccCCceEEEEEcchhc
Confidence            9999999999888877766554

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.85  E-value=9.3e-20  Score=172.66  Aligned_cols=264  Identities=19%  Similarity=0.363  Sum_probs=197.4

Q ss_pred             ceEEEEECCCCC-EEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEEeCC
Q 008496          217 EVCACAWSPAGS-LLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYD  295 (563)
Q Consensus       217 ~V~~~~~sp~~~-~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~d  295 (563)
                      .++.+.|+.... .+|+-++|..+++|.-.. +..        .+..+....+      ..-.|++......++++|+..
T Consensus        36 g~~s~~w~~~n~lvvas~~gdk~~~~~~K~g-~~~--------~Vp~~~k~~g------d~~~Cv~~~s~S~y~~sgG~~  100 (673)
T KOG4378|consen   36 GDFSFNWQRRNFLVVASMAGDKVMRIKEKDG-KTP--------EVPRVRKLTG------DNAFCVACASQSLYEISGGQS  100 (673)
T ss_pred             cceeeeccccceEEEeecCCceeEEEecccC-CCC--------ccceeecccc------chHHHHhhhhcceeeeccCcC
Confidence            488999987764 445556899999997432 110        0111111111      123444444455899999999


Q ss_pred             CeEEEEEcCCceeE-eeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecCCCceEEEE
Q 008496          296 GQARIWSTNGDLKC-TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATS  374 (563)
Q Consensus       296 g~i~vw~~~~~~~~-~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  374 (563)
                      +.|+|||...++.. .+..|++.|+++.++-...||++++..|.|.|..+.++.....|...                  
T Consensus       101 ~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~------------------  162 (673)
T KOG4378|consen  101 GCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTID------------------  162 (673)
T ss_pred             ceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecC------------------
Confidence            99999999866544 57889999999999999999999999999999988776533322211                  


Q ss_pred             eCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCE-EEEEeCCCcEEEEeCCCCceeeee-cccCCCEEEEEEccCC
Q 008496          375 STDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSL-LASCSDDVTAKIWNMKQDKYVHDL-REHSKEIYTIRWSPTG  452 (563)
Q Consensus       375 ~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~-las~s~dg~i~iwd~~~~~~~~~~-~~~~~~i~~~~~~p~~  452 (563)
                                            ....|.-+.|+|..++ |.+++++|.|.+||.....+++.+ ..|..+...|+|+|..
T Consensus       163 ----------------------sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsn  220 (673)
T KOG4378|consen  163 ----------------------SGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSN  220 (673)
T ss_pred             ----------------------CCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCc
Confidence                                  0122446788887664 678999999999999888776544 5799999999999864


Q ss_pred             CCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCe-eEEEEec
Q 008496          453 SGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGK-IVKTYTG  531 (563)
Q Consensus       453 ~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~-~~~~~~~  531 (563)
                              +.+|++.+.|..|.+||++..+....+. ...|..+++|+++|.+|+.|+..|.|..||++..+ .+.+...
T Consensus       221 --------e~l~vsVG~Dkki~~yD~~s~~s~~~l~-y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sa  291 (673)
T KOG4378|consen  221 --------EALLVSVGYDKKINIYDIRSQASTDRLT-YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSA  291 (673)
T ss_pred             --------cceEEEecccceEEEeecccccccceee-ecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeee
Confidence                    3589999999999999999766665554 35689999999999999999999999999998654 4444433


Q ss_pred             -CCCEEEEEEcCCC
Q 008496          532 -NGGIFEVCWNKEG  544 (563)
Q Consensus       532 -~~~i~~l~w~~~g  544 (563)
                       ...|..++|.+.-
T Consensus       292 h~~sVt~vafq~s~  305 (673)
T KOG4378|consen  292 HDASVTRVAFQPSP  305 (673)
T ss_pred             cccceeEEEeeecc
Confidence             4569999998864

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.85  E-value=3.1e-20  Score=162.70  Aligned_cols=289  Identities=18%  Similarity=0.231  Sum_probs=196.1

Q ss_pred             cCCCceeEecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEE
Q 008496          203 IPNSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDW  282 (563)
Q Consensus       203 ~~~~~~~~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~  282 (563)
                      +|+.+..+|++|.+.|+++.|-.+++ |.+|..-|.+++|.+.+.....             ++.   ..+...|+.+.-
T Consensus         2 ~pPdP~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~-------------~~r---~~g~~~it~lq~   64 (323)
T KOG0322|consen    2 VPPDPFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLP-------------LIR---LFGRLFITNLQS   64 (323)
T ss_pred             CCCCCeeEeccccchheehhhccchh-hhcccccceEEEEEeecCccch-------------hhh---hhccceeeceee
Confidence            46667789999999999999987766 8899999999999997643211             111   012456777777


Q ss_pred             CCCCCEEEEEeCCCeEEEEEcCCceeEeeccCCCCEEEEEeCCCC-----C---EEEEeeCCCc--EEEEECCCCceeEE
Q 008496          283 NGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKG-----D---YLLTGSCDKT--AIVWDVKTEEWKQQ  352 (563)
Q Consensus       283 s~~g~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~-----~---~l~s~s~D~~--v~iwd~~~~~~~~~  352 (563)
                      -|+ ..+.+-+.|+.+.+|+......  ...|.-.+.++.|.+..     +   .++.--..+.  +.+-|......++.
T Consensus        65 ~p~-d~l~tqgRd~~L~lw~ia~s~~--i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i  141 (323)
T KOG0322|consen   65 IPN-DSLDTQGRDPLLILWTIAYSAF--ISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQI  141 (323)
T ss_pred             cCC-cchhhcCCCceEEEEEccCcce--EEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEc
Confidence            776 5677889999999999876322  22244444555554321     1   1111111110  11111111101110


Q ss_pred             e----eecccCeEEEecCCC----ceEEEEeCCCeEEEEEcCCC----------cceeeecCCCcceeEEEECCCCCEEE
Q 008496          353 F----EFHSGPTLDVDWRNN----VSFATSSTDNMIYVCKIGEN----------RPIKTFAGHQGEVNCVKWDPTGSLLA  414 (563)
Q Consensus       353 ~----~~~~~~~~~~~~~~~----~~~~~~~~d~~i~~~~~~~~----------~~~~~~~~h~~~i~~~~~~~~~~~la  414 (563)
                      .    ....+.+++.+|.-.    ..++++-.+|.+.+|++..+          +.+.....|..+|.++.+.+.-..=+
T Consensus       142 ~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGi  221 (323)
T KOG0322|consen  142 ADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGI  221 (323)
T ss_pred             cCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCc
Confidence            0    112345666665422    23467778999999999886          33344557899999999987655556


Q ss_pred             EEeCCCcEEEEeCCCCc--e-e-eeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCC
Q 008496          415 SCSDDVTAKIWNMKQDK--Y-V-HDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGH  490 (563)
Q Consensus       415 s~s~dg~i~iwd~~~~~--~-~-~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h  490 (563)
                      +|+.+..+..|+++...  + + ..+.-....+..+...|+++         ++|+++.|+.||+|+.++.+.+..++-|
T Consensus       222 sgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~K---------IlATAGWD~RiRVyswrtl~pLAVLkyH  292 (323)
T KOG0322|consen  222 SGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGK---------ILATAGWDHRIRVYSWRTLNPLAVLKYH  292 (323)
T ss_pred             CCCccccceeeeeccccCcccccceEEecCCCccceEEccCCc---------EEeecccCCcEEEEEeccCCchhhhhhh
Confidence            78888889999886442  1 1 11111233466677778775         8999999999999999999999999999


Q ss_pred             CCCEEEEEEcCCCCEEEEEeCCCcEEEEec
Q 008496          491 REPVYSLAFSPTGEYLASGSLDKSMHIWSL  520 (563)
Q Consensus       491 ~~~i~~l~~spdg~~lasgs~dg~v~iw~~  520 (563)
                      +..|++++|+||...+|+||.|++|.+|++
T Consensus       293 sagvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  293 SAGVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             hcceeEEEeCCCCchhhhccCCceEEeeec
Confidence            999999999999999999999999999986

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.85  E-value=3.5e-19  Score=180.52  Aligned_cols=241  Identities=21%  Similarity=0.353  Sum_probs=182.4

Q ss_pred             CCCeEEEEECC-CCCEEEEEeCCCeEEEEEcCCcee-------EeeccCCCCEEEEEeCCCCC--EEEEeeCCCcEEEEE
Q 008496          274 SKDVTTLDWNG-EGTLLATGSYDGQARIWSTNGDLK-------CTLSKHKGPIFSLKWNKKGD--YLLTGSCDKTAIVWD  343 (563)
Q Consensus       274 ~~~V~~l~~s~-~g~~l~sg~~dg~i~vw~~~~~~~-------~~~~~h~~~V~~l~~~~~~~--~l~s~s~D~~v~iwd  343 (563)
                      ...|+|++|+| +..+++.|.++|+|.+||..+...       .....|..+|+.+.|..+-.  -|++++.||.|..|+
T Consensus       242 ~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~  321 (555)
T KOG1587|consen  242 PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWD  321 (555)
T ss_pred             CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeee
Confidence            46799999999 678899999999999999764321       23456999999999976544  499999999999998


Q ss_pred             CCCCcee-E-----Eee------ecccCeEEEec--CCCceEEEEeCCCeEEEEEcCCCc--------ceeeecCCCcce
Q 008496          344 VKTEEWK-Q-----QFE------FHSGPTLDVDW--RNNVSFATSSTDNMIYVCKIGENR--------PIKTFAGHQGEV  401 (563)
Q Consensus       344 ~~~~~~~-~-----~~~------~~~~~~~~~~~--~~~~~~~~~~~d~~i~~~~~~~~~--------~~~~~~~h~~~i  401 (563)
                      ++..... .     ...      .....+..+.+  .+...|+.|+..|.|+.+......        ++..+..|.+.|
T Consensus       322 ~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v  401 (555)
T KOG1587|consen  322 TDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPV  401 (555)
T ss_pred             ccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcce
Confidence            7643221 0     000      01112344444  466789999999999985543322        234566788999


Q ss_pred             eEEEECCCCCEEEEEeCCCcEEEEeCC-CCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC
Q 008496          402 NCVKWDPTGSLLASCSDDVTAKIWNMK-QDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL  480 (563)
Q Consensus       402 ~~~~~~~~~~~las~s~dg~i~iwd~~-~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~  480 (563)
                      .++.++|-+..++..+.|.+++||... ...++..+..+...+++++|||.-.        .+++++..||.|.|||+..
T Consensus       402 ~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrp--------avF~~~d~~G~l~iWDLl~  473 (555)
T KOG1587|consen  402 YAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRP--------AVFATVDGDGNLDIWDLLQ  473 (555)
T ss_pred             EeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCc--------eEEEEEcCCCceehhhhhc
Confidence            999999987655444449999999988 6677777777888899999999754        4899999999999999874


Q ss_pred             C--eEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCC
Q 008496          481 G--KLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKE  522 (563)
Q Consensus       481 ~--~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~  522 (563)
                      .  ..+.+..-+....+.+.|+++|+.|+.|...|.+++|++..
T Consensus       474 ~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~  517 (555)
T KOG1587|consen  474 DDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE  517 (555)
T ss_pred             cccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence            3  34445544556677888999999999999999999999864

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.84  E-value=1.7e-20  Score=187.84  Aligned_cols=281  Identities=26%  Similarity=0.454  Sum_probs=212.5

Q ss_pred             eeEecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCC
Q 008496          208 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT  287 (563)
Q Consensus       208 ~~~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~  287 (563)
                      ++.|.||...|+|+.|...|.++.||+.|..++||...++.+.             .    ...+|+..|+.++.+.+..
T Consensus       183 ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~l-------------A----s~rGhs~ditdlavs~~n~  245 (1113)
T KOG0644|consen  183 IKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCL-------------A----SCRGHSGDITDLAVSSNNT  245 (1113)
T ss_pred             HHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhh-------------c----cCCCCccccchhccchhhh
Confidence            4567899999999999999999999999999999997654322             1    1234678899999999999


Q ss_pred             EEEEEeCCCeEEEEEcC-CceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecC
Q 008496          288 LLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR  366 (563)
Q Consensus       288 ~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~  366 (563)
                      +++++++|..|++|.+. +..+..+.+|+++|++++|+|-.    +.+.||++++||.+-...    ...          
T Consensus       246 ~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~----~y~----------  307 (1113)
T KOG0644|consen  246 MIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPR----IYV----------  307 (1113)
T ss_pred             hhhhcccCceEEEEecCCCchHHHHhccccceeeeccCccc----cCCCCCceEecccccccc----ccC----------
Confidence            99999999999999965 66777899999999999999954    778999999999861100    000          


Q ss_pred             CCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEEE
Q 008496          367 NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTI  446 (563)
Q Consensus       367 ~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~  446 (563)
                                           ..|.. +. ....+.++.|..++.-++|++.|+..+.|.+....+      +...+.-+
T Consensus       308 ---------------------prp~~-~~-~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~------~~~~lif~  358 (1113)
T KOG0644|consen  308 ---------------------PRPLK-FT-EKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAW------RSNLLIFV  358 (1113)
T ss_pred             ---------------------CCCCC-cc-cccceeeeeccccccccccccCCcccccchhhHhhh------hccceEEE
Confidence                                 00100 00 113355666777788889999999998887542211      11111111


Q ss_pred             EEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEE-EEEeCCCcEEEEecCCCee
Q 008496          447 RWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYL-ASGSLDKSMHIWSLKEGKI  525 (563)
Q Consensus       447 ~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l-asgs~dg~v~iw~~~~~~~  525 (563)
                      ..+.+..        .+.+++-.+..+.+|++.+|..++.+.+|...++.+.++|-...+ .+++.||...|||+-.|..
T Consensus       359 t~ssd~~--------~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~p  430 (1113)
T KOG0644|consen  359 TRSSDLS--------SIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIP  430 (1113)
T ss_pred             ecccccc--------ccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCc
Confidence            1111111        245666678889999999999999999999999999999976655 4899999999999999987


Q ss_pred             EEEEe-cCCCEEEEEEcCCCCEEEEEECCCeEEEEE
Q 008496          526 VKTYT-GNGGIFEVCWNKEGDKIAACFANHTVCVLD  560 (563)
Q Consensus       526 ~~~~~-~~~~i~~l~w~~~g~~la~~~~~~~v~v~~  560 (563)
                      ++.|. +++.+.+-.||+||..++..-.=|.+.|+.
T Consensus       431 ik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g  466 (1113)
T KOG0644|consen  431 IKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYILG  466 (1113)
T ss_pred             ceeeecccceeeccccCCCCceEecCCCCCceEEec
Confidence            77664 567788999999999998887667777664

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.83  E-value=2e-17  Score=167.89  Aligned_cols=278  Identities=22%  Similarity=0.387  Sum_probs=197.4

Q ss_pred             CCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCC-----ceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCC
Q 008496          273 KSKDVTTLDWNGEGTLLATGSYDGQARIWSTNG-----DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTE  347 (563)
Q Consensus       273 ~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~-----~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~  347 (563)
                      |...++|.++||.++++++|..||.|.+|.--+     .....+.-|..+|.++.|+++|.+|+||+..+.+.+|.+.++
T Consensus       204 Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~  283 (792)
T KOG1963|consen  204 HTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETG  283 (792)
T ss_pred             hcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCC
Confidence            444589999999999999999999999997544     233467789999999999999999999999999999999998


Q ss_pred             ceeEEeeecccCeEEEecCCC-ceEEEEeCCCeEEEEEcCCCcc---eeeec--------CCCcceeEEEECCCCCEEEE
Q 008496          348 EWKQQFEFHSGPTLDVDWRNN-VSFATSSTDNMIYVCKIGENRP---IKTFA--------GHQGEVNCVKWDPTGSLLAS  415 (563)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~i~~~~~~~~~~---~~~~~--------~h~~~i~~~~~~~~~~~las  415 (563)
                      + .+-+..-.+++..+.+.++ ..++.+..|+.|.+........   +..+.        +..+-.+.++++|..+.++-
T Consensus       284 ~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vl  362 (792)
T KOG1963|consen  284 K-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVL  362 (792)
T ss_pred             C-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceee
Confidence            8 4444555667888877654 5567778899988876633211   11111        12445678899997778888


Q ss_pred             EeCCCcEEEEeCCCCceeeeecc-----cC------CCEEEEEEccCCCCCCCCCCcEEEEEEe--------CC--CeEE
Q 008496          416 CSDDVTAKIWNMKQDKYVHDLRE-----HS------KEIYTIRWSPTGSGTNNPNQQLILASAS--------FD--STVK  474 (563)
Q Consensus       416 ~s~dg~i~iwd~~~~~~~~~~~~-----~~------~~i~~~~~~p~~~~~~~~~~~~~l~s~s--------~d--g~i~  474 (563)
                      ++..|.|.+||+-+...+..+..     +.      -.++++..+-.|.         +++|.-        .|  -.+|
T Consensus       363 n~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs---------~maT~E~~~d~~~~~~~e~~LK  433 (792)
T KOG1963|consen  363 NGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGS---------WMATLEARIDKFNFFDGEVSLK  433 (792)
T ss_pred             cCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccce---------EEEEeeeeehhhhccCceEEEE
Confidence            99999999999988776655431     11      2344444444332         344432        23  3578


Q ss_pred             EEeCCCCeEEEE-----ecCCCCCEEEEEEc-CCCC-EEEEEeCCCcEEEEecCC------Ce------eEEEEecCCCE
Q 008496          475 LWDVELGKLLYS-----LNGHREPVYSLAFS-PTGE-YLASGSLDKSMHIWSLKE------GK------IVKTYTGNGGI  535 (563)
Q Consensus       475 iwd~~~~~~~~~-----~~~h~~~i~~l~~s-pdg~-~lasgs~dg~v~iw~~~~------~~------~~~~~~~~~~i  535 (563)
                      +|-......-+.     ...|...+...+|. |... .++++|.||.++||-+.+      +.      .+..| .+..+
T Consensus       434 FW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy-~k~~i  512 (792)
T KOG1963|consen  434 FWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSY-HKTPI  512 (792)
T ss_pred             EEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeecc-ccCcc
Confidence            886543332222     24687776666664 4444 899999999999999832      21      12223 35678


Q ss_pred             EEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496          536 FEVCWNKEGDKIAACFANHTVCVLDFR  562 (563)
Q Consensus       536 ~~l~w~~~g~~la~~~~~~~v~v~~~~  562 (563)
                      ..++|+.||+.||+++.| +|.|||.+
T Consensus       513 ~a~~fs~dGslla~s~~~-~Itiwd~~  538 (792)
T KOG1963|consen  513 TALCFSQDGSLLAVSFDD-TITIWDYD  538 (792)
T ss_pred             cchhhcCCCcEEEEecCC-EEEEecCC
Confidence            899999999999888765 89999975

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.81  E-value=3e-19  Score=172.27  Aligned_cols=223  Identities=25%  Similarity=0.425  Sum_probs=166.2

Q ss_pred             CCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCC---------ceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEE
Q 008496          273 KSKDVTTLDWNGEGTLLATGSYDGQARIWSTNG---------DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWD  343 (563)
Q Consensus       273 ~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~---------~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd  343 (563)
                      +...|..++|.|....|++|+.||.+.+|+++.         ....+|.+|.+||.|++..+++.++++|+.||+|+.|+
T Consensus       293 ~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~  372 (577)
T KOG0642|consen  293 HDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWN  372 (577)
T ss_pred             chhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeec
Confidence            456788999999999999999999999999721         24568999999999999999999999999999999998


Q ss_pred             CCCCceeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEE
Q 008496          344 VKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAK  423 (563)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~  423 (563)
                      +....  ..+..+.                             .......+.||.+.|+.+++|+....|++||.||++|
T Consensus       373 ~p~n~--dp~ds~d-----------------------------p~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr  421 (577)
T KOG0642|consen  373 LPPNQ--DPDDSYD-----------------------------PSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVR  421 (577)
T ss_pred             cCCCC--CcccccC-----------------------------cchhccceeccccceeeeeecccccceeeecCCceEE
Confidence            75210  0000000                             0112346789999999999999999999999999999


Q ss_pred             EEeCCCCceeeeec---ccCCC-----------------------------EEEEEEccCCC------------CCCCCC
Q 008496          424 IWNMKQDKYVHDLR---EHSKE-----------------------------IYTIRWSPTGS------------GTNNPN  459 (563)
Q Consensus       424 iwd~~~~~~~~~~~---~~~~~-----------------------------i~~~~~~p~~~------------~~~~~~  459 (563)
                      +|......+ .+|.   .|.-+                             +..+.+-+...            ...+|+
T Consensus       422 ~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~  500 (577)
T KOG0642|consen  422 LWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPT  500 (577)
T ss_pred             eeccCCcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCC
Confidence            998765443 1111   01000                             00011111000            001122


Q ss_pred             CcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEE
Q 008496          460 QQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKT  528 (563)
Q Consensus       460 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~  528 (563)
                      . -+..++..|+.|+++|..+++.++....|...++++++.|+|.+|++|+.||.|++|.+....++..
T Consensus       501 ~-~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~e  568 (577)
T KOG0642|consen  501 A-DITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLE  568 (577)
T ss_pred             C-CeeEecccCCceecccccccccchheeeccceecceeecCCCceEEeecCCceeehhhccchheeec
Confidence            2 2577889999999999999999999999999999999999999999999999999999875554433

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.81  E-value=3.1e-18  Score=157.86  Aligned_cols=292  Identities=17%  Similarity=0.266  Sum_probs=207.3

Q ss_pred             eEecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCE
Q 008496          209 TILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTL  288 (563)
Q Consensus       209 ~~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~  288 (563)
                      +-+.+|++.|+++.||.++++||+||.|..+++|.+...-...  ...|+.+      .+  ..|...|.||+|....++
T Consensus        50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k--~~KPI~~------~~--~~H~SNIF~L~F~~~N~~  119 (609)
T KOG4227|consen   50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRK--TPKPIGV------ME--HPHRSNIFSLEFDLENRF  119 (609)
T ss_pred             hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhc--CCCCcee------cc--CccccceEEEEEccCCee
Confidence            4567999999999999999999999999999999975421111  0111111      11  134477999999999999


Q ss_pred             EEEEeCCCeEEEEEcCCceeEeeccCC---CCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCce-eEEeeec--ccCeEE
Q 008496          289 LATGSYDGQARIWSTNGDLKCTLSKHK---GPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEW-KQQFEFH--SGPTLD  362 (563)
Q Consensus       289 l~sg~~dg~i~vw~~~~~~~~~~~~h~---~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~-~~~~~~~--~~~~~~  362 (563)
                      +.+|+.+|+|.+-|+..+...-...|.   +.|+.+.-+|..+.|++.+.++.|.+||.+.... ...+...  ......
T Consensus       120 ~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t  199 (609)
T KOG4227|consen  120 LYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYT  199 (609)
T ss_pred             EecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCcccee
Confidence            999999999999998876555444554   4999999999999999999999999999876541 1111111  112233


Q ss_pred             EecC--CCceEEEEeCCCeEEEEEcCCC-cceeeecCC---Cc---ceeEEEECCCCCEEEEEeCCCcEEEEeCCCCcee
Q 008496          363 VDWR--NNVSFATSSTDNMIYVCKIGEN-RPIKTFAGH---QG---EVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYV  433 (563)
Q Consensus       363 ~~~~--~~~~~~~~~~d~~i~~~~~~~~-~~~~~~~~h---~~---~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~  433 (563)
                      +.|.  ....+++.+..+.+-+|+++.. .++..+.+.   ..   .-.++.|+|+|+.|.+--.-..-.+||+.+.++.
T Consensus       200 ~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~  279 (609)
T KOG4227|consen  200 AEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCF  279 (609)
T ss_pred             eeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccce
Confidence            3333  3356677777788889998754 233332222   11   2357889999999887766555667887765442


Q ss_pred             -eeecccC-------CCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC----------C-------------e
Q 008496          434 -HDLREHS-------KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL----------G-------------K  482 (563)
Q Consensus       434 -~~~~~~~-------~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~----------~-------------~  482 (563)
                       ..+ .|.       ..+.+++|.-+          .-+++||.+-.|++|.+..          |             +
T Consensus       280 V~k~-D~N~~GY~N~~T~KS~~F~~D----------~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~  348 (609)
T KOG4227|consen  280 VLKS-DHNPNGYCNIKTIKSMTFIDD----------YTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEK  348 (609)
T ss_pred             eEec-cCCCCcceeeeeeeeeeeecc----------eeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecc
Confidence             222 222       23455565443          2489999999999998642          1             2


Q ss_pred             EEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q 008496          483 LLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLK  521 (563)
Q Consensus       483 ~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~  521 (563)
                      .+..+++|..-++.+.|+|...+|++.+-.+.++||.-.
T Consensus       349 ~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~  387 (609)
T KOG4227|consen  349 ELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSDH  387 (609)
T ss_pred             eeEEEecccccccceeecCCcceEeccchhhheeccccc
Confidence            345688999999999999999999999999999999754

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.81  E-value=1e-17  Score=149.01  Aligned_cols=275  Identities=20%  Similarity=0.366  Sum_probs=197.2

Q ss_pred             CCeEEEEECC---CCCEEEEEeCC----CeEEEEEcC---CceeEe-eccCCCCEEEEEeCCCCC----EEEEeeCCCcE
Q 008496          275 KDVTTLDWNG---EGTLLATGSYD----GQARIWSTN---GDLKCT-LSKHKGPIFSLKWNKKGD----YLLTGSCDKTA  339 (563)
Q Consensus       275 ~~V~~l~~s~---~g~~l~sg~~d----g~i~vw~~~---~~~~~~-~~~h~~~V~~l~~~~~~~----~l~s~s~D~~v  339 (563)
                      -++.++.|+.   ...+|+.|+..    +.|.|-..+   +..+.. -..|.-|++.+-|.|+..    .|++.+ +..+
T Consensus        45 ~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs-~D~L  123 (364)
T KOG0290|consen   45 WPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATS-SDFL  123 (364)
T ss_pred             CceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhcc-cCeE
Confidence            4577888883   34578888753    556665443   222221 136899999999999863    233333 3489


Q ss_pred             EEEECCCC--ceeE--Ee-----eecccCeEEEecC--CCceEEEEeCCCeEEEEEcCCCcc---eeeecCCCcceeEEE
Q 008496          340 IVWDVKTE--EWKQ--QF-----EFHSGPTLDVDWR--NNVSFATSSTDNMIYVCKIGENRP---IKTFAGHQGEVNCVK  405 (563)
Q Consensus       340 ~iwd~~~~--~~~~--~~-----~~~~~~~~~~~~~--~~~~~~~~~~d~~i~~~~~~~~~~---~~~~~~h~~~i~~~~  405 (563)
                      |+|.+...  ....  .+     ..+..|..+++|.  +...+.+++-|.+-.+|++..+..   -..+-+|..+|..++
T Consensus       124 RlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIa  203 (364)
T KOG0290|consen  124 RLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIA  203 (364)
T ss_pred             EEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEE
Confidence            99987632  2111  11     1234577889996  456788999999999999987633   345678999999999


Q ss_pred             ECCCC-CEEEEEeCCCcEEEEeCCCCceeeeec---ccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCC-CeEEEEeCCC
Q 008496          406 WDPTG-SLLASCSDDVTAKIWNMKQDKYVHDLR---EHSKEIYTIRWSPTGSGTNNPNQQLILASASFD-STVKLWDVEL  480 (563)
Q Consensus       406 ~~~~~-~~las~s~dg~i~iwd~~~~~~~~~~~---~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~d-g~i~iwd~~~  480 (563)
                      |...+ ..||+++.||.+|+||++......-+.   ....+...++|++...        .++|+-.+| ..|.|.|++.
T Consensus       204 f~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDp--------nymATf~~dS~~V~iLDiR~  275 (364)
T KOG0290|consen  204 FLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDP--------NYMATFAMDSNKVVILDIRV  275 (364)
T ss_pred             eccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCc--------hHHhhhhcCCceEEEEEecC
Confidence            99855 578999999999999998654322221   2244667778876542        477776666 4689999986


Q ss_pred             C-eEEEEecCCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEecCCCe------eEEEEecCCCEEEEEEcC-CCCEEEEEE
Q 008496          481 G-KLLYSLNGHREPVYSLAFSPT-GEYLASGSLDKSMHIWSLKEGK------IVKTYTGNGGIFEVCWNK-EGDKIAACF  551 (563)
Q Consensus       481 ~-~~~~~~~~h~~~i~~l~~spd-g~~lasgs~dg~v~iw~~~~~~------~~~~~~~~~~i~~l~w~~-~g~~la~~~  551 (563)
                      . ..+..+.+|...|+.|+|.|. +..|+|||.|.++.|||+..--      .+-.|...+.|..+.|++ .++.+|.|+
T Consensus       276 P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~~~Dwiai~~  355 (364)
T KOG0290|consen  276 PCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSSSQPDWIAICF  355 (364)
T ss_pred             CCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhhccceeeeeeecccCCCEEEEEe
Confidence            4 568899999999999999997 5789999999999999997421      234455667899999996 678999998


Q ss_pred             CCCeEEEE
Q 008496          552 ANHTVCVL  559 (563)
Q Consensus       552 ~~~~v~v~  559 (563)
                      .+ .+.|+
T Consensus       356 ~k-kleiL  362 (364)
T KOG0290|consen  356 GK-KLEIL  362 (364)
T ss_pred             cC-eeeEE
Confidence            76 44443

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.80  E-value=4e-18  Score=157.52  Aligned_cols=208  Identities=20%  Similarity=0.457  Sum_probs=169.2

Q ss_pred             eeccCCCCEEEEEeCCCC-CEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCC
Q 008496          310 TLSKHKGPIFSLKWNKKG-DYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGEN  388 (563)
Q Consensus       310 ~~~~h~~~V~~l~~~~~~-~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~  388 (563)
                      .+.+|+++|..++|+|-+ +.|+|||.|.+|.||.+..+.+...                                  ..
T Consensus        76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~----------------------------------lt  121 (472)
T KOG0303|consen   76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRD----------------------------------LT  121 (472)
T ss_pred             CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccC----------------------------------cc
Confidence            567999999999999955 5688999999999999865432111                                  12


Q ss_pred             cceeeecCCCcceeEEEECCCC-CEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEE
Q 008496          389 RPIKTFAGHQGEVNCVKWDPTG-SLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASA  467 (563)
Q Consensus       389 ~~~~~~~~h~~~i~~~~~~~~~-~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~  467 (563)
                      .|+..+.||...|--++|+|.- +.|+|++.|.+|.||+..++..+.++. |...|+++.|+.+|.         +|++.
T Consensus       122 epvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs---------~l~Tt  191 (472)
T KOG0303|consen  122 EPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGS---------LLCTT  191 (472)
T ss_pred             cceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCc---------eeeee
Confidence            5778899999999999999974 678999999999999999999888877 999999999999986         79999


Q ss_pred             eCCCeEEEEeCCCCeEEEEecCCCCC-EEEEEEcCCCCEEEEEe---CCCcEEEEecCCCe---eEEEEecCCCEEEEEE
Q 008496          468 SFDSTVKLWDVELGKLLYSLNGHREP-VYSLAFSPTGEYLASGS---LDKSMHIWSLKEGK---IVKTYTGNGGIFEVCW  540 (563)
Q Consensus       468 s~dg~i~iwd~~~~~~~~~~~~h~~~-i~~l~~spdg~~lasgs---~dg~v~iw~~~~~~---~~~~~~~~~~i~~l~w  540 (563)
                      +.|..|||||.++++.+..-.+|.+. -..+.|-.+|..+-||-   .+.++-+||..+-.   ...++....+|.--=|
T Consensus       192 ckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFy  271 (472)
T KOG0303|consen  192 CKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFY  271 (472)
T ss_pred             cccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEeccCCceEEeee
Confidence            99999999999999999988888653 34567888888444442   46789999986543   4556666777877789


Q ss_pred             cCCCCEEEEE-ECCCeEEEEEe
Q 008496          541 NKEGDKIAAC-FANHTVCVLDF  561 (563)
Q Consensus       541 ~~~g~~la~~-~~~~~v~v~~~  561 (563)
                      ++|.+.|..| -+|+.|+-|.+
T Consensus       272 D~dt~ivYl~GKGD~~IRYyEi  293 (472)
T KOG0303|consen  272 DPDTSIVYLCGKGDSSIRYFEI  293 (472)
T ss_pred             cCCCCEEEEEecCCcceEEEEe
Confidence            9999988765 45788887765

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.80  E-value=1.1e-17  Score=150.74  Aligned_cols=235  Identities=21%  Similarity=0.334  Sum_probs=177.2

Q ss_pred             EEEEEeCCCCCEEEEeeCCCcEEEEECCCCc------------eeEEeeec-ccCeEEEecC--------CCceEEEEeC
Q 008496          318 IFSLKWNKKGDYLLTGSCDKTAIVWDVKTEE------------WKQQFEFH-SGPTLDVDWR--------NNVSFATSST  376 (563)
Q Consensus       318 V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~------------~~~~~~~~-~~~~~~~~~~--------~~~~~~~~~~  376 (563)
                      ..+++|+|+|..|++-+.|..+.+|++....            ....+... ...+++.+|-        ....|++++.
T Consensus        52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr  131 (406)
T KOG2919|consen   52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR  131 (406)
T ss_pred             hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence            3568999999999999999999999874321            11122222 2346777774        2356889999


Q ss_pred             CCeEEEEEcCCCcceeeecC--CCcc---eeEEEECCCCCEEEEEeCCCcEEEEeC-CCCce--eeeeccc-----CCCE
Q 008496          377 DNMIYVCKIGENRPIKTFAG--HQGE---VNCVKWDPTGSLLASCSDDVTAKIWNM-KQDKY--VHDLREH-----SKEI  443 (563)
Q Consensus       377 d~~i~~~~~~~~~~~~~~~~--h~~~---i~~~~~~~~~~~las~s~dg~i~iwd~-~~~~~--~~~~~~~-----~~~i  443 (563)
                      +.-|++|+.-+++....+.+  |..+   ..+++|+|||..|..| ...+||++|+ +.++.  +.....+     .+-|
T Consensus       132 ~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~gii  210 (406)
T KOG2919|consen  132 DQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGII  210 (406)
T ss_pred             cCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCCCcchhhhhccccccccee
Confidence            99999999988876666554  4333   3589999999998655 6679999998 54442  2222223     5668


Q ss_pred             EEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeC-CCcEEEEecCC
Q 008496          444 YTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSL-DKSMHIWSLKE  522 (563)
Q Consensus       444 ~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~-dg~v~iw~~~~  522 (563)
                      .+++|+|...        ..++.|+.-..+-|+.-..+.+++.+.+|.+.|+.+.|.+||+.|.+|+. |-.|..||++.
T Consensus       211 sc~a~sP~~~--------~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~  282 (406)
T KOG2919|consen  211 SCFAFSPMDS--------KTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRY  282 (406)
T ss_pred             eeeeccCCCC--------cceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehh
Confidence            8899998754        26899999999999998889999999999999999999999999999874 67899999986


Q ss_pred             Ce-eEEEEe-----cCCCEEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496          523 GK-IVKTYT-----GNGGIFEVCWNKEGDKIAACFANHTVCVLDFR  562 (563)
Q Consensus       523 ~~-~~~~~~-----~~~~i~~l~w~~~g~~la~~~~~~~v~v~~~~  562 (563)
                      -+ ++..+.     .+..| -+...|+|++||.|..+|.|.|||++
T Consensus       283 ~~~pv~~L~rhv~~TNQRI-~FDld~~~~~LasG~tdG~V~vwdlk  327 (406)
T KOG2919|consen  283 SRDPVYALERHVGDTNQRI-LFDLDPKGEILASGDTDGSVRVWDLK  327 (406)
T ss_pred             ccchhhhhhhhccCccceE-EEecCCCCceeeccCCCccEEEEecC
Confidence            43 222222     22333 23457899999999999999999986

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.80  E-value=7.1e-18  Score=152.07  Aligned_cols=232  Identities=24%  Similarity=0.402  Sum_probs=182.7

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCeEEEEEcCCc----eeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEEC-CCCce
Q 008496          275 KDVTTLDWNGEGTLLATGSYDGQARIWSTNGD----LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDV-KTEEW  349 (563)
Q Consensus       275 ~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~----~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~-~~~~~  349 (563)
                      .+|+|.+|++|++.+|.+-.+..+.||...+.    ...++..|...|+++.|+|..+.|++|+.|+.-.+|.. ..+++
T Consensus        11 ~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~W   90 (361)
T KOG1523|consen   11 EPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTW   90 (361)
T ss_pred             CceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCee
Confidence            57999999999999999999999999987653    45688999999999999999999999999999999987 44444


Q ss_pred             eEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCC
Q 008496          350 KQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQ  429 (563)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~  429 (563)
                      ..                                       ...+..++..++++.|+|.++.||+||.-..|.||-+..
T Consensus        91 kp---------------------------------------tlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~  131 (361)
T KOG1523|consen   91 KP---------------------------------------TLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQ  131 (361)
T ss_pred             cc---------------------------------------ceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEec
Confidence            33                                       333445778899999999999999999999999998765


Q ss_pred             Cce--e--eeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC------------------CeEEEEe
Q 008496          430 DKY--V--HDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL------------------GKLLYSL  487 (563)
Q Consensus       430 ~~~--~--~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~------------------~~~~~~~  487 (563)
                      ..-  +  +.-+.+...|+++.|.|++.         +|+.||.|+..|+|..--                  |+++.++
T Consensus       132 ENdWWVsKhikkPirStv~sldWhpnnV---------LlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~  202 (361)
T KOG1523|consen  132 ENDWWVSKHIKKPIRSTVTSLDWHPNNV---------LLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEA  202 (361)
T ss_pred             ccceehhhhhCCccccceeeeeccCCcc---------eecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhh
Confidence            431  1  11234567899999999864         899999999999996421                  2333344


Q ss_pred             cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCe-eEEEE-ecCCCEEEEEEcCCCCEEEEEECCC
Q 008496          488 NGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGK-IVKTY-TGNGGIFEVCWNKEGDKIAACFANH  554 (563)
Q Consensus       488 ~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~-~~~~~-~~~~~i~~l~w~~~g~~la~~~~~~  554 (563)
                      ....+.|..+.|+|+|..||-.+.|..|.+=|..... .+.+. ...-+..++.|-.+...+++|++-+
T Consensus       203 ~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~~~~~~lP~ls~~~ise~~vv~ag~~c~  271 (361)
T KOG1523|consen  203 SSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQSVATAQLPLLSVSWISENSVVAAGYDCG  271 (361)
T ss_pred             ccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhccchhhccCCceeeEeecCCceeecCCCCC
Confidence            3455789999999999999999999999998876543 22222 2234567889988888888887633

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.80  E-value=3.1e-17  Score=166.57  Aligned_cols=293  Identities=19%  Similarity=0.285  Sum_probs=203.2

Q ss_pred             CCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEE
Q 008496          213 GHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATG  292 (563)
Q Consensus       213 ~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg  292 (563)
                      .|+-.++|.++||.++++|+|..||.|.+|.=.... ..     . ....+-|      -|...|++++|+++|.+|++|
T Consensus       203 ~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~-~~-----~-~t~t~lH------WH~~~V~~L~fS~~G~~LlSG  269 (792)
T KOG1963|consen  203 HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSS-DD-----S-ETCTLLH------WHHDEVNSLSFSSDGAYLLSG  269 (792)
T ss_pred             hhcccceeEEeccccceEEEeccCCcEEEEeccccc-cc-----c-ccceEEE------ecccccceeEEecCCceEeec
Confidence            477778999999999999999999999999632200 00     0 0011111      245779999999999999999


Q ss_pred             eCCCeEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccC-------------
Q 008496          293 SYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGP-------------  359 (563)
Q Consensus       293 ~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~-------------  359 (563)
                      |..|.+-+|......+..++.-.++|..+.++|++.+.+....|+.|.+-...+......+.....+             
T Consensus       270 G~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t  349 (792)
T KOG1963|consen  270 GREGVLVLWQLETGKKQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTT  349 (792)
T ss_pred             ccceEEEEEeecCCCcccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccce
Confidence            9999999999887667788899999999999999999999999999999877655544333322211             


Q ss_pred             eEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeec-----CC------CcceeEEEECCCCCEEEEEe--------CCC
Q 008496          360 TLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFA-----GH------QGEVNCVKWDPTGSLLASCS--------DDV  420 (563)
Q Consensus       360 ~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~-----~h------~~~i~~~~~~~~~~~las~s--------~dg  420 (563)
                      ...++. .....+..+..+.|..|++-+...+..+.     -+      .-.+++++.+..|.+++|.-        .||
T Consensus       350 ~~~idp-r~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~  428 (792)
T KOG1963|consen  350 GVSIDP-RTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDG  428 (792)
T ss_pred             eEEEcC-CCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCc
Confidence            122222 23456667778889899887765544332     11      22467788888899988862        343


Q ss_pred             --cEEEEeCCCCceee----e-ecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC------C----eE
Q 008496          421 --TAKIWNMKQDKYVH----D-LREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL------G----KL  483 (563)
Q Consensus       421 --~i~iwd~~~~~~~~----~-~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~------~----~~  483 (563)
                        .+|+|-.+....-.    . ...|...+...++.+..+.       ...++++.||.++||-+..      .    .|
T Consensus       429 e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs-------~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c  501 (792)
T KOG1963|consen  429 EVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRS-------VRCVTASVDGDFKIWVFTDDSNIYKKSSNWTC  501 (792)
T ss_pred             eEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCccc-------ceeEEeccCCeEEEEEEecccccCcCccceEE
Confidence              46788765433211    1 1346666666666554321       2678999999999997732      2    22


Q ss_pred             EEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCC-CeeEE
Q 008496          484 LYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKE-GKIVK  527 (563)
Q Consensus       484 ~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~-~~~~~  527 (563)
                      ...-.-|..++++++||.||..|| .|.|++|.|||..+ ..+..
T Consensus       502 ~~i~sy~k~~i~a~~fs~dGslla-~s~~~~Itiwd~~~~~~l~~  545 (792)
T KOG1963|consen  502 KAIGSYHKTPITALCFSQDGSLLA-VSFDDTITIWDYDTKNELLC  545 (792)
T ss_pred             eeeeccccCcccchhhcCCCcEEE-EecCCEEEEecCCChhhhhc
Confidence            222123788999999999997666 56788999999987 44433

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.80  E-value=1.2e-17  Score=148.35  Aligned_cols=244  Identities=21%  Similarity=0.390  Sum_probs=181.2

Q ss_pred             EeeccCCCCEEEEEeCCCCCEEE-EeeCC-------CcEEEEECCCC---------ceeEEee-ecccCeEEEecCCCce
Q 008496          309 CTLSKHKGPIFSLKWNKKGDYLL-TGSCD-------KTAIVWDVKTE---------EWKQQFE-FHSGPTLDVDWRNNVS  370 (563)
Q Consensus       309 ~~~~~h~~~V~~l~~~~~~~~l~-s~s~D-------~~v~iwd~~~~---------~~~~~~~-~~~~~~~~~~~~~~~~  370 (563)
                      ..|..|.+.|+.|+-+|-...++ |+..+       ..+.||.+...         +++..+. .+.+.+.++.|.++..
T Consensus        57 kvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~  136 (370)
T KOG1007|consen   57 KVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSD  136 (370)
T ss_pred             hhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCC
Confidence            35677889999999999776554 44442       24679987432         1222222 2334678899988766


Q ss_pred             EEEEeCCCeEEEEEcCCCcc-eeee-----cCCCcceeEEEECC--CCCEEEEEeCCCcEEEEeCCCCceeeeec-ccCC
Q 008496          371 FATSSTDNMIYVCKIGENRP-IKTF-----AGHQGEVNCVKWDP--TGSLLASCSDDVTAKIWNMKQDKYVHDLR-EHSK  441 (563)
Q Consensus       371 ~~~~~~d~~i~~~~~~~~~~-~~~~-----~~h~~~i~~~~~~~--~~~~las~s~dg~i~iwd~~~~~~~~~~~-~~~~  441 (563)
                      -+++-.|+.|.+|++.+... +..+     .+|....++-+|+|  +|+.+++. .|++++.||+++.+....+. +|..
T Consensus       137 klasm~dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI~dAHgq  215 (370)
T KOG1007|consen  137 KLASMDDNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNSIEDAHGQ  215 (370)
T ss_pred             eeEEeccCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEEEEEccchhhhcchhhhhcc
Confidence            66666799999999987654 2222     24566788999998  67787765 47899999999888776664 6888


Q ss_pred             CEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC-eEEEEecCCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEe
Q 008496          442 EIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG-KLLYSLNGHREPVYSLAFSPT-GEYLASGSLDKSMHIWS  519 (563)
Q Consensus       442 ~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~h~~~i~~l~~spd-g~~lasgs~dg~v~iw~  519 (563)
                      .+..+.|.|+        .+.+|++|+.||.|||||.+.- ..+.++.+|.-.|+++.|+|. .++|.+||.|..|.+|.
T Consensus       216 ~vrdlDfNpn--------kq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsc  287 (370)
T KOG1007|consen  216 RVRDLDFNPN--------KQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSC  287 (370)
T ss_pred             eeeeccCCCC--------ceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEe
Confidence            8999988775        4579999999999999999864 568899999999999999996 57889999999999997


Q ss_pred             cCCCe-----------------------------eEEEEec-CCCEEEEEEcCCCCEEEEE-ECCCeEEEEEe
Q 008496          520 LKEGK-----------------------------IVKTYTG-NGGIFEVCWNKEGDKIAAC-FANHTVCVLDF  561 (563)
Q Consensus       520 ~~~~~-----------------------------~~~~~~~-~~~i~~l~w~~~g~~la~~-~~~~~v~v~~~  561 (563)
                      ...-.                             ++.+|.. ...|++++|+.-.-.+.++ +-||++.|=++
T Consensus       288 a~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V  360 (370)
T KOG1007|consen  288 ASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSV  360 (370)
T ss_pred             ccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecC
Confidence            64211                             1223333 3579999999987766555 66999887655

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.79  E-value=3.8e-16  Score=153.26  Aligned_cols=219  Identities=19%  Similarity=0.300  Sum_probs=152.9

Q ss_pred             ceeEecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEE------------Eeee-------
Q 008496          207 DVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVL------------KHVK-------  267 (563)
Q Consensus       207 ~~~~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~------------~~~~-------  267 (563)
                      ...+|+||++.|+|++|+.+|+++|+|+.|..+.+|.-.-...........+.-..+            ..+.       
T Consensus        45 llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK  124 (1081)
T KOG1538|consen   45 LLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQK  124 (1081)
T ss_pred             cccccccccceEEEEEEccCCceeccCCCceeEEEecccccceeeeccCCeeeEeecCchHHHhhhcchhhccccChhhh
Confidence            356899999999999999999999999999999999753211111111111111000            0000       


Q ss_pred             -cccccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCceeEeec---cCCCCEEEEEeCCCC-----CEEEEeeCCCc
Q 008496          268 -GRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLS---KHKGPIFSLKWNKKG-----DYLLTGSCDKT  338 (563)
Q Consensus       268 -~~~~~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~~~~~~---~h~~~V~~l~~~~~~-----~~l~s~s~D~~  338 (563)
                       -.....+..|.+++|..||++|+.|-.||+|.+-+..|..+..+.   +..++|++++|+|..     ..++...+..+
T Consensus       125 ~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qT  204 (1081)
T KOG1538|consen  125 SVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQT  204 (1081)
T ss_pred             hHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccce
Confidence             000122456889999999999999999999999998887665554   477899999999964     46778888888


Q ss_pred             EEEEECCCCceeEEeeecccCeEEEec-CCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEe
Q 008496          339 AIVWDVKTEEWKQQFEFHSGPTLDVDW-RNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCS  417 (563)
Q Consensus       339 v~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s  417 (563)
                      +.++.+... .+..-..-.-...++.+ .+...+..++.|+.+.++... +..+.++......|..++..|+++.++.|+
T Consensus       205 LSFy~LsG~-~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~-GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GC  282 (1081)
T KOG1538|consen  205 LSFYQLSGK-QIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFTRD-GVRLGTVGEQDSWIWTVQAKPNSQYVVVGC  282 (1081)
T ss_pred             eEEEEecce-eecccccCCCCchhheeccCCcEEEEccCCCceEEEeec-CeEEeeccccceeEEEEEEccCCceEEEEE
Confidence            888876432 22211111112334444 455566788889988888653 334455555667899999999999999999


Q ss_pred             CCCcEEEEeC
Q 008496          418 DDVTAKIWNM  427 (563)
Q Consensus       418 ~dg~i~iwd~  427 (563)
                      .||+|-.|++
T Consensus       283 qDGTiACyNl  292 (1081)
T KOG1538|consen  283 QDGTIACYNL  292 (1081)
T ss_pred             ccCeeehhhh
Confidence            9999999986

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.79  E-value=1e-17  Score=160.32  Aligned_cols=262  Identities=18%  Similarity=0.328  Sum_probs=186.8

Q ss_pred             CCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCceeEeeccCCCCEE-EEEe-------CCCCCEEEEeeCCCcEEEEEC
Q 008496          273 KSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIF-SLKW-------NKKGDYLLTGSCDKTAIVWDV  344 (563)
Q Consensus       273 ~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~-~l~~-------~~~~~~l~s~s~D~~v~iwd~  344 (563)
                      +..-|.|+.|+.....+.+++.+-.+.-|+........+.-...-|. .+..       -.....|+.++.||.+.+-+ 
T Consensus        13 ~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il~-   91 (737)
T KOG1524|consen   13 NSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVILN-   91 (737)
T ss_pred             cceeEEeecccccceEEEeccCceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEec-
Confidence            34557799999887776665555444445543322211111111111 0000       11235688899999998886 


Q ss_pred             CCCceeEEeeecccCeEEEecCCC-ceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEE
Q 008496          345 KTEEWKQQFEFHSGPTLDVDWRNN-VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAK  423 (563)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~  423 (563)
                      +.+++.+....|.+.+.+..|..+ ..+++++.||.|.+|.... ....++......|.|++|.|+++-++-|-. +.+.
T Consensus        92 k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsG-MLRStl~Q~~~~v~c~~W~p~S~~vl~c~g-~h~~  169 (737)
T KOG1524|consen   92 KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSG-MLRSTVVQNEESIRCARWAPNSNSIVFCQG-GHIS  169 (737)
T ss_pred             ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccc-hHHHHHhhcCceeEEEEECCCCCceEEecC-CeEE
Confidence            566777788889999999999765 5688999999999998643 222233345568999999999877665543 3455


Q ss_pred             EEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCC
Q 008496          424 IWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTG  503 (563)
Q Consensus       424 iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg  503 (563)
                      |=.+.....+-..++|.+-|.++.|+|...         ++++|+.|-..+|||.. |..++.-..|.-||++++|+|| 
T Consensus       170 IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~---------lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~ITSva~npd-  238 (737)
T KOG1524|consen  170 IKPLAANSKIIRWRAHDGLVLSLSWSTQSN---------IIASGGEDFRFKIWDAQ-GANLFTSAAEEYAITSVAFNPE-  238 (737)
T ss_pred             EeecccccceeEEeccCcEEEEeecCcccc---------ceeecCCceeEEeeccc-CcccccCChhccceeeeeeccc-
Confidence            555555555567789999999999999764         89999999999999976 7888888889999999999999 


Q ss_pred             CEEEEEeCCCcEEEEecCCCeeEEEEecCCCEEEEEEcCCCCEEEEEECCCeEEEE
Q 008496          504 EYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVL  559 (563)
Q Consensus       504 ~~lasgs~dg~v~iw~~~~~~~~~~~~~~~~i~~l~w~~~g~~la~~~~~~~v~v~  559 (563)
                      +.++.||.. ++++=.          ...+.|+.++||+||..++.|.+.|.+.+-
T Consensus       239 ~~~~v~S~n-t~R~~~----------p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A  283 (737)
T KOG1524|consen  239 KDYLLWSYN-TARFSS----------PRVGSIFNLSWSADGTQATCGTSTGQLIVA  283 (737)
T ss_pred             cceeeeeee-eeeecC----------CCccceEEEEEcCCCceeeccccCceEEEe
Confidence            666766654 333111          124679999999999999999999987653

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.79  E-value=1.8e-16  Score=137.56  Aligned_cols=268  Identities=20%  Similarity=0.302  Sum_probs=181.4

Q ss_pred             CeEEEEECCCCCEEEEEeCCCeEEEEEcC----------Cce-eEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEEC
Q 008496          276 DVTTLDWNGEGTLLATGSYDGQARIWSTN----------GDL-KCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDV  344 (563)
Q Consensus       276 ~V~~l~~s~~g~~l~sg~~dg~i~vw~~~----------~~~-~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~  344 (563)
                      .|..-+|+|.+++|+.|..+|.|.+..++          |+. ....++|.+||+.++|+  ..+|++|+ ||.|+-|..
T Consensus        12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W   88 (325)
T KOG0649|consen   12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEW   88 (325)
T ss_pred             HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEeee
Confidence            35566899999999999999999999753          222 23458999999999998  34667665 699998865


Q ss_pred             CCCc----eeE----Eeeeccc--C---eEEEecC-CCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCC
Q 008496          345 KTEE----WKQ----QFEFHSG--P---TLDVDWR-NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTG  410 (563)
Q Consensus       345 ~~~~----~~~----~~~~~~~--~---~~~~~~~-~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~  410 (563)
                      +...    ++.    +...+.+  +   +..+-.. ....++.++.|+.++-||+..++..++|+||+..|.++.-....
T Consensus        89 ~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~  168 (325)
T KOG0649|consen   89 NEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNAN  168 (325)
T ss_pred             hhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccC
Confidence            4321    111    1122221  1   2222111 23455556699999999999999999999999999999985555


Q ss_pred             CEEEEEeCCCcEEEEeCCCCceeeeeccc----------CCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC
Q 008496          411 SLLASCSDDVTAKIWNMKQDKYVHDLREH----------SKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL  480 (563)
Q Consensus       411 ~~las~s~dg~i~iwd~~~~~~~~~~~~~----------~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~  480 (563)
                      ..+.||++||++||||.++.+.+..+...          ...|.+++-+.           -.|++| ....+.+|+++.
T Consensus       169 ~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~e-----------dWlvCG-gGp~lslwhLrs  236 (325)
T KOG0649|consen  169 GQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNE-----------DWLVCG-GGPKLSLWHLRS  236 (325)
T ss_pred             cceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccC-----------ceEEec-CCCceeEEeccC
Confidence            66789999999999999999988765422          12344444322           155544 456799999998


Q ss_pred             CeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEec-CCCEEEEEEcCCCC-EEEEEECCCeEEE
Q 008496          481 GKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTG-NGGIFEVCWNKEGD-KIAACFANHTVCV  558 (563)
Q Consensus       481 ~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~-~~~i~~l~w~~~g~-~la~~~~~~~v~v  558 (563)
                      .++...+. -..++..+.|-.|  .+++++..+.|.-|.+. |.+-...+. ....++.+|+..-- .|.+++....+.|
T Consensus       237 se~t~vfp-ipa~v~~v~F~~d--~vl~~G~g~~v~~~~l~-Gvl~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i  312 (325)
T KOG0649|consen  237 SESTCVFP-IPARVHLVDFVDD--CVLIGGEGNHVQSYTLN-GVLQANIPVESTACYSASWQTSPIKFISIAGFSNKLHI  312 (325)
T ss_pred             CCceEEEe-cccceeEeeeecc--eEEEeccccceeeeeec-cEEEEeccCCccceeeecccCCceEEEEecccceeeee
Confidence            87766554 2356788888554  67778877889888874 333333222 34567888887664 4433333335655


Q ss_pred             E-Eee
Q 008496          559 L-DFR  562 (563)
Q Consensus       559 ~-~~~  562 (563)
                      + |||
T Consensus       313 ~~~~~  317 (325)
T KOG0649|consen  313 LKDFR  317 (325)
T ss_pred             eeccc
Confidence            5 554

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.78  E-value=2.6e-17  Score=169.24  Aligned_cols=288  Identities=21%  Similarity=0.326  Sum_probs=205.0

Q ss_pred             cCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECC--CCCEE
Q 008496          212 EGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG--EGTLL  289 (563)
Q Consensus       212 ~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~--~g~~l  289 (563)
                      .+....-..+.|+|-...++++...-.|++||...++...+...+              ......|+.+.+-.  |..++
T Consensus      1061 ~~n~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~--------------~~~~t~Vs~l~liNe~D~aLl 1126 (1387)
T KOG1517|consen 1061 TGNNQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNG--------------AFPDTRVSDLELINEQDDALL 1126 (1387)
T ss_pred             hcCCCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCC--------------CCCCCccceeeeecccchhhe
Confidence            333344567889999888999887889999999877643322221              12245688887754  56789


Q ss_pred             EEEeCCCeEEEEEcCC------ceeEee---cc----CCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeec
Q 008496          290 ATGSYDGQARIWSTNG------DLKCTL---SK----HKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFH  356 (563)
Q Consensus       290 ~sg~~dg~i~vw~~~~------~~~~~~---~~----h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~  356 (563)
                      ++|+.||.||||+-..      +++...   .+    -.+.-.-+.|.....+|++++.-+.|+|||+....+...+...
T Consensus      1127 Ltas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~ 1206 (1387)
T KOG1517|consen 1127 LTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYG 1206 (1387)
T ss_pred             eeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccC
Confidence            9999999999997421      122211   11    1222244678887778887777889999999988777665544


Q ss_pred             ccC-eE--EEecCCCceEEEEeCCCeEEEEEcCCC---cceeeecCCCcc--eeEEEECCCCCE-EEEEeCCCcEEEEeC
Q 008496          357 SGP-TL--DVDWRNNVSFATSSTDNMIYVCKIGEN---RPIKTFAGHQGE--VNCVKWDPTGSL-LASCSDDVTAKIWNM  427 (563)
Q Consensus       357 ~~~-~~--~~~~~~~~~~~~~~~d~~i~~~~~~~~---~~~~~~~~h~~~--i~~~~~~~~~~~-las~s~dg~i~iwd~  427 (563)
                      ... +.  ..+......++++..||.|++||.+..   .++..++.|+..  |..+.+.+.|-- |++||.||.|++||+
T Consensus      1207 s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~Dl 1286 (1387)
T KOG1517|consen 1207 SSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDL 1286 (1387)
T ss_pred             CCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEec
Confidence            332 22  223345678899999999999998754   357888899887  999999886644 899999999999999


Q ss_pred             CCCce--eeeecccC--C-CEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecC-------CCCCEE
Q 008496          428 KQDKY--VHDLREHS--K-EIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNG-------HREPVY  495 (563)
Q Consensus       428 ~~~~~--~~~~~~~~--~-~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-------h~~~i~  495 (563)
                      +....  ..++..|-  + ..+++..++...         ++|+|+. +.|+||++. |+.+..++.       ..+.+.
T Consensus      1287 R~~~~e~~~~iv~~~~yGs~lTal~VH~hap---------iiAsGs~-q~ikIy~~~-G~~l~~~k~n~~F~~q~~gs~s 1355 (1387)
T KOG1517|consen 1287 RMSSKETFLTIVAHWEYGSALTALTVHEHAP---------IIASGSA-QLIKIYSLS-GEQLNIIKYNPGFMGQRIGSVS 1355 (1387)
T ss_pred             ccCcccccceeeeccccCccceeeeeccCCC---------eeeecCc-ceEEEEecC-hhhhcccccCcccccCcCCCcc
Confidence            87422  12222332  2 477777766543         7899988 999999986 444433322       235689


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEecCCCe
Q 008496          496 SLAFSPTGEYLASGSLDKSMHIWSLKEGK  524 (563)
Q Consensus       496 ~l~~spdg~~lasgs~dg~v~iw~~~~~~  524 (563)
                      |++|+|-.-.||+|+.|.+|.||...+..
T Consensus      1356 cL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1356 CLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred             eeeecchhHhhhhccCCceEEEeecCCcC
Confidence            99999999999999999999999887543

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.78  E-value=2.2e-18  Score=159.27  Aligned_cols=160  Identities=26%  Similarity=0.524  Sum_probs=136.9

Q ss_pred             eeecCCCcceeEEEECCC-CCEEEEEeCCCcEEEEeCCCC-------ceeeeecccCCCEEEEEEccCCCCCCCCCCcEE
Q 008496          392 KTFAGHQGEVNCVKWDPT-GSLLASCSDDVTAKIWNMKQD-------KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLI  463 (563)
Q Consensus       392 ~~~~~h~~~i~~~~~~~~-~~~las~s~dg~i~iwd~~~~-------~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~  463 (563)
                      -.+.||++.|..++|+|- ...|||||+|.+|.||.+-.+       .++..+.+|...|-.++|+|...        .+
T Consensus        75 P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~--------NV  146 (472)
T KOG0303|consen   75 PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAP--------NV  146 (472)
T ss_pred             CCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccch--------hh
Confidence            356799999999999995 467899999999999997543       45678889999999999999754        37


Q ss_pred             EEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEecCCC--EEEEEEc
Q 008496          464 LASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGG--IFEVCWN  541 (563)
Q Consensus       464 l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~~~~--i~~l~w~  541 (563)
                      |+|++.|.+|.|||+.+|+.+.++. |..-|++++|+.||.+|+|.+.|+.|+|||.++++++..-..+.+  ..-+-|-
T Consensus       147 Llsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl  225 (472)
T KOG0303|consen  147 LLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFL  225 (472)
T ss_pred             HhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEe
Confidence            9999999999999999999999988 999999999999999999999999999999999999877644433  3456788


Q ss_pred             CCCCEEEEEEC---CCeEEEEE
Q 008496          542 KEGDKIAACFA---NHTVCVLD  560 (563)
Q Consensus       542 ~~g~~la~~~~---~~~v~v~~  560 (563)
                      .+|+.+.+|++   +.++++||
T Consensus       226 ~~g~i~tTGfsr~seRq~aLwd  247 (472)
T KOG0303|consen  226 ASGKIFTTGFSRMSERQIALWD  247 (472)
T ss_pred             ccCceeeeccccccccceeccC
Confidence            89997777765   45677776

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.78  E-value=6e-18  Score=152.93  Aligned_cols=267  Identities=20%  Similarity=0.364  Sum_probs=188.0

Q ss_pred             CCCceEEEEECCCC----CEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCC-CE
Q 008496          214 HTSEVCACAWSPAG----SLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG-TL  288 (563)
Q Consensus       214 h~~~V~~~~~sp~~----~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g-~~  288 (563)
                      |.-..+.|+|+-+.    .+||.||.-|.|||.|+..+...                 +....|...|..+.+.|+. ++
T Consensus        88 ~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~-----------------~~~~ghG~sINeik~~p~~~ql  150 (385)
T KOG1034|consen   88 HDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCS-----------------KNYRGHGGSINEIKFHPDRPQL  150 (385)
T ss_pred             CCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhc-----------------cceeccCccchhhhcCCCCCcE
Confidence            66678899998753    48999999999999998765421                 2233456789999999964 79


Q ss_pred             EEEEeCCCeEEEEEcCCc-eeEee---ccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEe
Q 008496          289 LATGSYDGQARIWSTNGD-LKCTL---SKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVD  364 (563)
Q Consensus       289 l~sg~~dg~i~vw~~~~~-~~~~~---~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~  364 (563)
                      +++|+.|..||+|+.... .+..+   .+|.+.|.++.|+++|.+|++|+.|.++++|++...+....++..      +.
T Consensus       151 vls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s------~~  224 (385)
T KOG1034|consen  151 VLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELS------IT  224 (385)
T ss_pred             EEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhh------cc
Confidence            999999999999998754 34443   579999999999999999999999999999999876654443321      11


Q ss_pred             cCCCceEEEEeCCCeEEEE-EcCCCccee-eecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCC-CCce---------
Q 008496          365 WRNNVSFATSSTDNMIYVC-KIGENRPIK-TFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMK-QDKY---------  432 (563)
Q Consensus       365 ~~~~~~~~~~~~d~~i~~~-~~~~~~~~~-~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~-~~~~---------  432 (563)
                      |.++.         +-+-+ .....-|.. +-.-|...|.|+.|-  |.+++|=|-++.|..|... -...         
T Consensus       225 ~~~~~---------t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es  293 (385)
T KOG1034|consen  225 YSPNK---------TTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPES  293 (385)
T ss_pred             cCCCC---------ccCcCCccccccccccccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCcc
Confidence            21111         00000 000000111 223488899999996  6889999999999999862 1111         


Q ss_pred             ----eeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEE--EEecC--CCCCEEEEEEcCCCC
Q 008496          433 ----VHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLL--YSLNG--HREPVYSLAFSPTGE  504 (563)
Q Consensus       433 ----~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~--~~~~~--h~~~i~~l~~spdg~  504 (563)
                          +..+.-....|.-+.|+-+..       +.+||.|...|.|.+||+++....  .++..  ....|...+||.||.
T Consensus       294 ~~Ti~~~~~~~~c~iWfirf~~d~~-------~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs  366 (385)
T KOG1034|consen  294 ATTILGEFDYPMCDIWFIRFAFDPW-------QKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGS  366 (385)
T ss_pred             ceeeeeEeccCccceEEEEEeecHH-------HHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCc
Confidence                223334455666666654432       126889999999999999876542  12221  235689999999999


Q ss_pred             EEEEEeCCCcEEEEecC
Q 008496          505 YLASGSLDKSMHIWSLK  521 (563)
Q Consensus       505 ~lasgs~dg~v~iw~~~  521 (563)
                      +|+....|++|.-||..
T Consensus       367 ~lv~vcdd~~Vwrwdrv  383 (385)
T KOG1034|consen  367 ILVLVCDDGTVWRWDRV  383 (385)
T ss_pred             EEEEEeCCCcEEEEEee
Confidence            99999999999999864

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.77  E-value=2e-16  Score=160.58  Aligned_cols=257  Identities=21%  Similarity=0.306  Sum_probs=185.4

Q ss_pred             CeEEEEEcCCceeE-eeccCCCCEEEEEeCCCC-CEEEEeeCCCcEEEEECCCCcee--E----EeeecccCeEEEecCC
Q 008496          296 GQARIWSTNGDLKC-TLSKHKGPIFSLKWNKKG-DYLLTGSCDKTAIVWDVKTEEWK--Q----QFEFHSGPTLDVDWRN  367 (563)
Q Consensus       296 g~i~vw~~~~~~~~-~~~~h~~~V~~l~~~~~~-~~l~s~s~D~~v~iwd~~~~~~~--~----~~~~~~~~~~~~~~~~  367 (563)
                      +.+.+|+....... ..-.-..+|++++|+|.. +.++.|..+|.|.+||++.+...  .    ....|..++..+.|..
T Consensus       222 ~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~  301 (555)
T KOG1587|consen  222 GVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQ  301 (555)
T ss_pred             ceEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEec
Confidence            47899997654222 122346789999999965 56677788999999999876542  1    2235677899999963


Q ss_pred             C---ceEEEEeCCCeEEEEEcCCCc-ceeee-----c------CCCcceeEEEECCCC-CEEEEEeCCCcEEEEe---CC
Q 008496          368 N---VSFATSSTDNMIYVCKIGENR-PIKTF-----A------GHQGEVNCVKWDPTG-SLLASCSDDVTAKIWN---MK  428 (563)
Q Consensus       368 ~---~~~~~~~~d~~i~~~~~~~~~-~~~~~-----~------~h~~~i~~~~~~~~~-~~las~s~dg~i~iwd---~~  428 (563)
                      +   ..|++++.||.|..|+++.-. |+...     .      .-...+++++|.+.. ..++.|+++|.|.--+   ..
T Consensus       302 ~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~  381 (555)
T KOG1587|consen  302 NEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYT  381 (555)
T ss_pred             cCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCc
Confidence            2   459999999999999876432 11111     1      112357889998754 4688999999886522   22


Q ss_pred             CCc-----eeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCC-CCeEEEEecCCCCCEEEEEEcCC
Q 008496          429 QDK-----YVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVE-LGKLLYSLNGHREPVYSLAFSPT  502 (563)
Q Consensus       429 ~~~-----~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~-~~~~~~~~~~h~~~i~~l~~spd  502 (563)
                      ...     .+..+..|.++|+++.++|-+.        .++++++ |.+|+||.-. ...++..+..+...|++++|||.
T Consensus       382 ~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~--------k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSpt  452 (555)
T KOG1587|consen  382 PAPEVSYKGHSTFITHIGPVYAVSRNPFYP--------KNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPT  452 (555)
T ss_pred             ccccccccccccccccCcceEeeecCCCcc--------ceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCc
Confidence            221     1335567889999999998764        2455555 9999999987 66777888878888999999998


Q ss_pred             C-CEEEEEeCCCcEEEEecCCCe--eEEEEec-CCCEEEEEEcCCCCEEEEEECCCeEEEEEe
Q 008496          503 G-EYLASGSLDKSMHIWSLKEGK--IVKTYTG-NGGIFEVCWNKEGDKIAACFANHTVCVLDF  561 (563)
Q Consensus       503 g-~~lasgs~dg~v~iw~~~~~~--~~~~~~~-~~~i~~l~w~~~g~~la~~~~~~~v~v~~~  561 (563)
                      . ..+|++..||.|.|||+....  .+.+..- ....+.+.|++.|+.||+|..+|++.++++
T Consensus       453 rpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l  515 (555)
T KOG1587|consen  453 RPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKL  515 (555)
T ss_pred             CceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEc
Confidence            7 466788889999999996532  2222221 334567899999999999999999999987

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.77  E-value=1.5e-15  Score=150.60  Aligned_cols=272  Identities=14%  Similarity=0.228  Sum_probs=171.1

Q ss_pred             EEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEEe-CCCeEEEEEcCC--c
Q 008496          230 LASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGS-YDGQARIWSTNG--D  306 (563)
Q Consensus       230 latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~-~dg~i~vw~~~~--~  306 (563)
                      +++...|+.|++|++.+...        +  ..++...     .......++++|++++|++++ .++.|.+|+.+.  .
T Consensus         5 y~~~~~~~~I~~~~~~~~g~--------l--~~~~~~~-----~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~   69 (330)
T PRK11028          5 YIASPESQQIHVWNLNHEGA--------L--TLLQVVD-----VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGA   69 (330)
T ss_pred             EEEcCCCCCEEEEEECCCCc--------e--eeeeEEe-----cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCc
Confidence            34446789999999853211        0  1111111     123466789999999987765 478899998753  2


Q ss_pred             eeEe-eccCCCCEEEEEeCCCCCEEEEeeC-CCcEEEEECCCCceeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEE
Q 008496          307 LKCT-LSKHKGPIFSLKWNKKGDYLLTGSC-DKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCK  384 (563)
Q Consensus       307 ~~~~-~~~h~~~V~~l~~~~~~~~l~s~s~-D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~  384 (563)
                      +... .....+....+.|+|++++|++++. ++.|.+|++.+.....                                 
T Consensus        70 l~~~~~~~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~---------------------------------  116 (330)
T PRK11028         70 LTFAAESPLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPV---------------------------------  116 (330)
T ss_pred             eEEeeeecCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCC---------------------------------
Confidence            2211 1112335578999999999887764 7889999875321100                                 


Q ss_pred             cCCCcceeeecCCCcceeEEEECCCCCEEE-EEeCCCcEEEEeCCCCceeee-----ec-ccCCCEEEEEEccCCCCCCC
Q 008496          385 IGENRPIKTFAGHQGEVNCVKWDPTGSLLA-SCSDDVTAKIWNMKQDKYVHD-----LR-EHSKEIYTIRWSPTGSGTNN  457 (563)
Q Consensus       385 ~~~~~~~~~~~~h~~~i~~~~~~~~~~~la-s~s~dg~i~iwd~~~~~~~~~-----~~-~~~~~i~~~~~~p~~~~~~~  457 (563)
                          ..+..+.+ .....+++++|++++++ +...++.|.+||+++...+..     .. ........+.|+|++.    
T Consensus       117 ----~~~~~~~~-~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~----  187 (330)
T PRK11028        117 ----APIQIIEG-LEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQ----  187 (330)
T ss_pred             ----CceeeccC-CCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCC----
Confidence                00011111 12345688999998875 455679999999976432211     11 1123346788888875    


Q ss_pred             CCCcEEEEEEeCCCeEEEEeCCC--C--eEEEEecCC------CCCEEEEEEcCCCCEEEEEe-CCCcEEEEecCCC---
Q 008496          458 PNQQLILASASFDSTVKLWDVEL--G--KLLYSLNGH------REPVYSLAFSPTGEYLASGS-LDKSMHIWSLKEG---  523 (563)
Q Consensus       458 ~~~~~~l~s~s~dg~i~iwd~~~--~--~~~~~~~~h------~~~i~~l~~spdg~~lasgs-~dg~v~iw~~~~~---  523 (563)
                          .++++...+++|.+|++..  +  +.+..+..+      ......+.|+|||++|+++. .++.|.+|++...   
T Consensus       188 ----~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~  263 (330)
T PRK11028        188 ----YAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSV  263 (330)
T ss_pred             ----EEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCe
Confidence                3334444589999999973  3  233333221      11234689999999998875 4789999998543   


Q ss_pred             -eeEEEEecCCCEEEEEEcCCCCEEEEEEC-CCeEEEEEee
Q 008496          524 -KIVKTYTGNGGIFEVCWNKEGDKIAACFA-NHTVCVLDFR  562 (563)
Q Consensus       524 -~~~~~~~~~~~i~~l~w~~~g~~la~~~~-~~~v~v~~~~  562 (563)
                       +++...........++++|||++|+++.. +++|.||++.
T Consensus       264 ~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~  304 (330)
T PRK11028        264 LSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEID  304 (330)
T ss_pred             EEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence             23333333334568899999999998765 7899999763

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.76  E-value=1.2e-16  Score=145.36  Aligned_cols=265  Identities=16%  Similarity=0.265  Sum_probs=185.8

Q ss_pred             CEEEEEeCCCeEEEEEcC-CceeEeeccCCCCEEEEEeCC--CCCEEEEeeCCCcEEEEECCCCceeEEeeecc---cCe
Q 008496          287 TLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNK--KGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHS---GPT  360 (563)
Q Consensus       287 ~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~--~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~---~~~  360 (563)
                      +.+|++..+|.|++||.. ++....+.+|...+..++|..  ..+.+++|+.||+|++||+++...+..+....   .+.
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f  120 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF  120 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence            578899999999999975 567778999999999999977  56789999999999999999876554443332   234


Q ss_pred             EEEecC-CCceEEEE----eCCCeEEEEEcCCCcc-eeee-cCCCcceeEEEECCCC-CEEEEEeCCCcEEEEeCCCCc-
Q 008496          361 LDVDWR-NNVSFATS----STDNMIYVCKIGENRP-IKTF-AGHQGEVNCVKWDPTG-SLLASCSDDVTAKIWNMKQDK-  431 (563)
Q Consensus       361 ~~~~~~-~~~~~~~~----~~d~~i~~~~~~~~~~-~~~~-~~h~~~i~~~~~~~~~-~~las~s~dg~i~iwd~~~~~-  431 (563)
                      .+++-. +...++++    ..+..+.+||++..+. +..+ ..|...|++++|+|.. ++|+|||-||-+.|||++... 
T Consensus       121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~E  200 (376)
T KOG1188|consen  121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNE  200 (376)
T ss_pred             eEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcc
Confidence            455544 23334443    2456789999987764 5544 5799999999999964 689999999999999987653 


Q ss_pred             --eeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCC------------CCEEEE
Q 008496          432 --YVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHR------------EPVYSL  497 (563)
Q Consensus       432 --~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~------------~~i~~l  497 (563)
                        .+.....|...|.++.|...+..        -|.+-+...+..+|+++.+.+...+....            .-+-. 
T Consensus       201 eDaL~~viN~~sSI~~igw~~~~yk--------rI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~-  271 (376)
T KOG1188|consen  201 EDALLHVINHGSSIHLIGWLSKKYK--------RIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVIN-  271 (376)
T ss_pred             hhhHHHhhcccceeeeeeeecCCcc--------eEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheee-
Confidence              22233457778999999876631        36677889999999998877554432210            00111 


Q ss_pred             EEcC-CCCEEEEEeC-CCcEEEEecC---CCe---eEEEEecC--CCEEEEEEcCCCCEEEEEECCCeEEEEE
Q 008496          498 AFSP-TGEYLASGSL-DKSMHIWSLK---EGK---IVKTYTGN--GGIFEVCWNKEGDKIAACFANHTVCVLD  560 (563)
Q Consensus       498 ~~sp-dg~~lasgs~-dg~v~iw~~~---~~~---~~~~~~~~--~~i~~l~w~~~g~~la~~~~~~~v~v~~  560 (563)
                      ..+| ++..++.++. -+...++-+.   ++.   .+..+.+.  .-|.++.|+..++.|.+|+.||.+.+|-
T Consensus       272 ~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk  344 (376)
T KOG1188|consen  272 EHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWK  344 (376)
T ss_pred             cccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEe
Confidence            1223 4455665554 4555555443   232   22333331  2356889999999999999999999996

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.76  E-value=5.3e-16  Score=138.13  Aligned_cols=271  Identities=21%  Similarity=0.357  Sum_probs=191.0

Q ss_pred             ceEEEEECC--C-CCEEEEeeC----CCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCC---
Q 008496          217 EVCACAWSP--A-GSLLASGSG----DSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG---  286 (563)
Q Consensus       217 ~V~~~~~sp--~-~~~latgs~----D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g---  286 (563)
                      .++++.||.  + +.+||.|+-    ...|.|-.+.....              .........+..+++.+-|.|+.   
T Consensus        46 ~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~--------------e~~~~a~fd~~YP~tK~~wiPd~~g~  111 (364)
T KOG0290|consen   46 PLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSG--------------ELVEDANFDHPYPVTKLMWIPDSKGV  111 (364)
T ss_pred             ceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCC--------------ceeccCCCCCCCCccceEecCCcccc
Confidence            478899984  3 458888872    34454444331100              00011112456789999999975   


Q ss_pred             --CEEEEEeCCCeEEEEEcCC---ce--eEee-----ccCCCCEEEEEeCCC-CCEEEEeeCCCcEEEEECCCCc---ee
Q 008496          287 --TLLATGSYDGQARIWSTNG---DL--KCTL-----SKHKGPIFSLKWNKK-GDYLLTGSCDKTAIVWDVKTEE---WK  350 (563)
Q Consensus       287 --~~l~sg~~dg~i~vw~~~~---~~--~~~~-----~~h~~~V~~l~~~~~-~~~l~s~s~D~~v~iwd~~~~~---~~  350 (563)
                        .+|||.+  -.+|+|....   ..  ...+     ..+.+|+++..|+.- -+++.++|-|.++.|||++++.   +.
T Consensus       112 ~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vk  189 (364)
T KOG0290|consen  112 YPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVK  189 (364)
T ss_pred             Ccchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeecccccee
Confidence              4566544  5899998752   11  1122     345679999999974 4678899999999999998863   46


Q ss_pred             EEeeecccCeEEEecCC--CceEEEEeCCCeEEEEEcCCCccee-eecCC--CcceeEEEECCC-CCEEEEEeC-CCcEE
Q 008496          351 QQFEFHSGPTLDVDWRN--NVSFATSSTDNMIYVCKIGENRPIK-TFAGH--QGEVNCVKWDPT-GSLLASCSD-DVTAK  423 (563)
Q Consensus       351 ~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~i~~~~~~~~~~~~-~~~~h--~~~i~~~~~~~~-~~~las~s~-dg~i~  423 (563)
                      .++-.|...+.++.|..  ...|++++.||.++++|++....-. .+...  ..+...++|++. -+++||-.. ...|.
T Consensus       190 TQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~  269 (364)
T KOG0290|consen  190 TQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVV  269 (364)
T ss_pred             eEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEE
Confidence            78888999999999976  5689999999999999998644322 22222  345677889875 456777554 45688


Q ss_pred             EEeCCCC-ceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCe------EEEEecCCCCCEEE
Q 008496          424 IWNMKQD-KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK------LLYSLNGHREPVYS  496 (563)
Q Consensus       424 iwd~~~~-~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~------~~~~~~~h~~~i~~  496 (563)
                      |-|++.. .++..++.|.+.|..|+|.|...        ..|++|+.|..+.|||+...-      .+.... -...|+.
T Consensus       270 iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~--------~hictaGDD~qaliWDl~q~~~~~~~dPilay~-a~~EVNq  340 (364)
T KOG0290|consen  270 ILDIRVPCTPVARLRNHQASVNGIAWAPHSS--------SHICTAGDDCQALIWDLQQMPRENGEDPILAYT-AGGEVNQ  340 (364)
T ss_pred             EEEecCCCcceehhhcCcccccceEecCCCC--------ceeeecCCcceEEEEecccccccCCCCchhhhh-ccceeee
Confidence            9999854 46788999999999999999765        368999999999999986421      112222 3457999


Q ss_pred             EEEcCC-CCEEEEEeCC
Q 008496          497 LAFSPT-GEYLASGSLD  512 (563)
Q Consensus       497 l~~spd-g~~lasgs~d  512 (563)
                      +.|+|. +.+|+.+...
T Consensus       341 i~Ws~~~~Dwiai~~~k  357 (364)
T KOG0290|consen  341 IQWSSSQPDWIAICFGK  357 (364)
T ss_pred             eeecccCCCEEEEEecC
Confidence            999964 6788877643

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.75  E-value=4e-17  Score=143.36  Aligned_cols=276  Identities=15%  Similarity=0.227  Sum_probs=187.2

Q ss_pred             cCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCc-eeEeec-cCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCce
Q 008496          272 EKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGD-LKCTLS-KHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEW  349 (563)
Q Consensus       272 ~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~-~~~~~~-~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~  349 (563)
                      +++..|+++.|..+++ |.+|..-|.+.+|...+. ....+. .|...|+.+.--|+ ..+.+-+.|..+.+|++.....
T Consensus        12 p~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~~   89 (323)
T KOG0322|consen   12 PHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYSAF   89 (323)
T ss_pred             cccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEccCcce
Confidence            4567899999998876 889999999999998764 334455 57788999998887 5789999999999999876554


Q ss_pred             eEEeeecccCeEEEecC-------CCc--eEEEEeCCC--eEEEEEcCCCcceeee----cCCCcceeEEEECCC-CC--
Q 008496          350 KQQFEFHSGPTLDVDWR-------NNV--SFATSSTDN--MIYVCKIGENRPIKTF----AGHQGEVNCVKWDPT-GS--  411 (563)
Q Consensus       350 ~~~~~~~~~~~~~~~~~-------~~~--~~~~~~~d~--~i~~~~~~~~~~~~~~----~~h~~~i~~~~~~~~-~~--  411 (563)
                      +..-.   -++..+.|-       ...  ........+  .+.+-|.+....+...    .+..+.+.|..|..+ ++  
T Consensus        90 i~i~S---i~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~  166 (323)
T KOG0322|consen   90 ISIHS---IVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTF  166 (323)
T ss_pred             EEEee---eeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceE
Confidence            43211   111111110       000  011000000  0111121111111111    133456777775432 32  


Q ss_pred             EEEEEeCCCcEEEEeCCCCc----------eeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC-
Q 008496          412 LLASCSDDVTAKIWNMKQDK----------YVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL-  480 (563)
Q Consensus       412 ~las~s~dg~i~iwd~~~~~----------~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~-  480 (563)
                      +++.|-++|.+.+||+.++.          .+.....|.+++.++.+.+...         .=++|+.+..+..|++.. 
T Consensus       167 lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~---------rGisgga~dkl~~~Sl~~s  237 (323)
T KOG0322|consen  167 LLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCD---------RGISGGADDKLVMYSLNHS  237 (323)
T ss_pred             EEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhc---------CCcCCCccccceeeeeccc
Confidence            46778889999999998873          3334456889999999986432         124677777888888753 


Q ss_pred             -CeEE--EEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEec-CCCEEEEEEcCCCCEEEEEECCCeE
Q 008496          481 -GKLL--YSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTG-NGGIFEVCWNKEGDKIAACFANHTV  556 (563)
Q Consensus       481 -~~~~--~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~-~~~i~~l~w~~~g~~la~~~~~~~v  556 (563)
                       +.+.  .++.-..-.|..+..-||++.+||++.|++|+||+.++...+..++- .++|++++|+|+...+|+++.|++|
T Consensus       238 ~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rI  317 (323)
T KOG0322|consen  238 TGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARI  317 (323)
T ss_pred             cCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceE
Confidence             2221  12222234588899999999999999999999999999988776653 4679999999999999999999999


Q ss_pred             EEEEe
Q 008496          557 CVLDF  561 (563)
Q Consensus       557 ~v~~~  561 (563)
                      .+|++
T Consensus       318 SLWkL  322 (323)
T KOG0322|consen  318 SLWKL  322 (323)
T ss_pred             Eeeec
Confidence            99986

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.75  E-value=5.5e-18  Score=159.76  Aligned_cols=227  Identities=21%  Similarity=0.343  Sum_probs=191.0

Q ss_pred             EEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCC
Q 008496          319 FSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQ  398 (563)
Q Consensus       319 ~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~  398 (563)
                      +.+.++.+|.+|+.|+..|.|..+|..++.+...+.. ...+.++.|..+..|.+....+.+++||-... .+.-++. .
T Consensus       133 Y~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v-~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~Gt-ElHClk~-~  209 (545)
T KOG1272|consen  133 YHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV-METVRDVTFLHNEQFFAVAQKKYVYVYDNNGT-ELHCLKR-H  209 (545)
T ss_pred             eeeeecCCccEEEecCCccceeeeecccceeeeeeeh-hhhhhhhhhhcchHHHHhhhhceEEEecCCCc-EEeehhh-c
Confidence            6789999999999999999999999999987765543 34577888887777777778889999986432 2333332 2


Q ss_pred             cceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeC
Q 008496          399 GEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDV  478 (563)
Q Consensus       399 ~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~  478 (563)
                      ..|..+.|-|..-+|+++++.|.++--|+.+++.+..++.-.+.+..++-.|-..         ++-.|...|+|.+|..
T Consensus       210 ~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~Na---------Vih~GhsnGtVSlWSP  280 (545)
T KOG1272|consen  210 IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNA---------VIHLGHSNGTVSLWSP  280 (545)
T ss_pred             CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccc---------eEEEcCCCceEEecCC
Confidence            4688899999999999999999999999999999999988888888888777654         7889999999999999


Q ss_pred             CCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEecCCCEEEEEEcCCCCEEEEEECCCeEEE
Q 008496          479 ELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCV  558 (563)
Q Consensus       479 ~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~~~~i~~l~w~~~g~~la~~~~~~~v~v  558 (563)
                      ...+.+..+..|.++|.+|++.++|+|+||.|.|..|+|||++.-..+.++....+...+++|..| .||++.++ .|.|
T Consensus       281 ~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~Sqkg-lLA~~~G~-~v~i  358 (545)
T KOG1272|consen  281 NSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHPASNLSLSQKG-LLALSYGD-HVQI  358 (545)
T ss_pred             CCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeecCCCcccccccccc-ceeeecCC-eeee
Confidence            998888888899999999999999999999999999999999988877777666667889998887 66777655 5777


Q ss_pred             E
Q 008496          559 L  559 (563)
Q Consensus       559 ~  559 (563)
                      |
T Consensus       359 w  359 (545)
T KOG1272|consen  359 W  359 (545)
T ss_pred             e
Confidence            7

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.75  E-value=1.1e-14  Score=134.32  Aligned_cols=233  Identities=22%  Similarity=0.348  Sum_probs=171.8

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCeEEEEEcCCceeEe-eccCCCCEEEEEeCCCCCEEEEeeCC--CcEEEEECCCCceeE
Q 008496          275 KDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCT-LSKHKGPIFSLKWNKKGDYLLTGSCD--KTAIVWDVKTEEWKQ  351 (563)
Q Consensus       275 ~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~~~~-~~~h~~~V~~l~~~~~~~~l~s~s~D--~~v~iwd~~~~~~~~  351 (563)
                      ..+..+.|+.+...|..|+.||. +++..+...++. .......|..+-|+..  .++..+.+  +.+++.+.+.+..+.
T Consensus         6 ~ti~~~~~Nqd~~~lsvGs~~Gy-k~~~~~~~~k~~~~~~~~~~IvEmLFSSS--LvaiV~~~qpr~Lkv~~~Kk~~~IC   82 (391)
T KOG2110|consen    6 PTINFIGFNQDSTLLSVGSKDGY-KIFSCSPFEKCFSKDTEGVSIVEMLFSSS--LVAIVSIKQPRKLKVVHFKKKTTIC   82 (391)
T ss_pred             cceeeeeeccceeEEEccCCCce-eEEecCchHHhhcccCCCeEEEEeecccc--eeEEEecCCCceEEEEEcccCceEE
Confidence            45777789999999999999985 566654322211 1111223444556543  44444443  458999888777666


Q ss_pred             EeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecC---CCcceeEEEECCCCCEEEE--EeCCCcEEEEe
Q 008496          352 QFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAG---HQGEVNCVKWDPTGSLLAS--CSDDVTAKIWN  426 (563)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~---h~~~i~~~~~~~~~~~las--~s~dg~i~iwd  426 (563)
                      .+.+ ..+++++....+..++.- . ..|++||+..-+++.++..   +...+.++.+++.+.++|-  ....|.|.|||
T Consensus        83 e~~f-pt~IL~VrmNr~RLvV~L-e-e~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d  159 (391)
T KOG2110|consen   83 EIFF-PTSILAVRMNRKRLVVCL-E-ESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFD  159 (391)
T ss_pred             EEec-CCceEEEEEccceEEEEE-c-ccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEE
Confidence            5544 335777776555444433 2 2399999998888776643   4445667777777778875  33478999999


Q ss_pred             CCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCe-EEEEeCCCCeEEEEecCCC--CCEEEEEEcCCC
Q 008496          427 MKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDST-VKLWDVELGKLLYSLNGHR--EPVYSLAFSPTG  503 (563)
Q Consensus       427 ~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~-i~iwd~~~~~~~~~~~~h~--~~i~~l~~spdg  503 (563)
                      ..+-+++..+.+|.+++-+++|+|+|.         +||++|..|+ ||++.+.+|+.+++++.-.  ..|++++||||+
T Consensus       160 ~~nl~~v~~I~aH~~~lAalafs~~G~---------llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds  230 (391)
T KOG2110|consen  160 TINLQPVNTINAHKGPLAALAFSPDGT---------LLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDS  230 (391)
T ss_pred             cccceeeeEEEecCCceeEEEECCCCC---------EEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCC
Confidence            999999999999999999999999996         8999999997 7999999999999986432  358999999999


Q ss_pred             CEEEEEeCCCcEEEEecCC
Q 008496          504 EYLASGSLDKSMHIWSLKE  522 (563)
Q Consensus       504 ~~lasgs~dg~v~iw~~~~  522 (563)
                      ++|++.|..++|+||.+.+
T Consensus       231 ~~L~~sS~TeTVHiFKL~~  249 (391)
T KOG2110|consen  231 QFLAASSNTETVHIFKLEK  249 (391)
T ss_pred             CeEEEecCCCeEEEEEecc
Confidence            9999999999999999864

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.74  E-value=1.5e-16  Score=162.59  Aligned_cols=211  Identities=20%  Similarity=0.236  Sum_probs=150.0

Q ss_pred             CCeEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEEEeeCC---CcEEEEECCCCceeEEeeecccCeEEEecCCCceE
Q 008496          295 DGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCD---KTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSF  371 (563)
Q Consensus       295 dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D---~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  371 (563)
                      +..|++||.+|.....+..|...+.+.+|+|+|++|+.++.+   ..|.+||+.++....                    
T Consensus       183 ~~~i~i~d~dg~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~--------------------  242 (429)
T PRK01742        183 PYEVRVADYDGFNQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV--------------------  242 (429)
T ss_pred             eEEEEEECCCCCCceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE--------------------
Confidence            468999999887667778888999999999999999887654   368889887654211                    


Q ss_pred             EEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEe-CCCcEEEE--eCCCCceeeeecccCCCEEEEEE
Q 008496          372 ATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCS-DDVTAKIW--NMKQDKYVHDLREHSKEIYTIRW  448 (563)
Q Consensus       372 ~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s-~dg~i~iw--d~~~~~~~~~~~~~~~~i~~~~~  448 (563)
                                         +..+.+|.   ..++|+|||+.|+.++ .+|.+.||  |+.++. ...+..+...+....|
T Consensus       243 -------------------l~~~~g~~---~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~w  299 (429)
T PRK01742        243 -------------------VASFRGHN---GAPAFSPDGSRLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSW  299 (429)
T ss_pred             -------------------EecCCCcc---CceeECCCCCEEEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEE
Confidence                               11122332   3579999999887764 68876666  555554 3455666677888999


Q ss_pred             ccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC-eEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEE
Q 008496          449 SPTGSGTNNPNQQLILASASFDSTVKLWDVELG-KLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVK  527 (563)
Q Consensus       449 ~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~  527 (563)
                      +|+|.        .+++++..+|..+||++... .....+ .+..  ++++|||||++|+.++.++ +.+||+.+++...
T Consensus       300 SpDG~--------~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~  367 (429)
T PRK01742        300 SPDGQ--------SILFTSDRSGSPQVYRMSASGGGASLV-GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEV  367 (429)
T ss_pred             CCCCC--------EEEEEECCCCCceEEEEECCCCCeEEe-cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEE
Confidence            99985        24455556788888876532 222223 3433  5678999999999888765 6669999887543


Q ss_pred             EEecCCCEEEEEEcCCCCEEEEEECCCeEEEEEe
Q 008496          528 TYTGNGGIFEVCWNKEGDKIAACFANHTVCVLDF  561 (563)
Q Consensus       528 ~~~~~~~i~~l~w~~~g~~la~~~~~~~v~v~~~  561 (563)
                      .... .....++|+|+|+.|++++.++.+.+|.+
T Consensus       368 lt~~-~~~~~~~~sPdG~~i~~~s~~g~~~~l~~  400 (429)
T PRK01742        368 LSST-FLDESPSISPNGIMIIYSSTQGLGKVLQL  400 (429)
T ss_pred             ecCC-CCCCCceECCCCCEEEEEEcCCCceEEEE
Confidence            3222 23356889999999999988888877764

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.74  E-value=2.6e-16  Score=160.90  Aligned_cols=214  Identities=17%  Similarity=0.220  Sum_probs=144.4

Q ss_pred             CCCeEEEEECCCCCEEEEEeCC---CeEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEEEee-CCCcEEEE--ECCCC
Q 008496          274 SKDVTTLDWNGEGTLLATGSYD---GQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGS-CDKTAIVW--DVKTE  347 (563)
Q Consensus       274 ~~~V~~l~~s~~g~~l~sg~~d---g~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s-~D~~v~iw--d~~~~  347 (563)
                      ...+...+|||||+.|+.++.+   ..|++|+..+.....+....+....++|+|+|++|+.++ .+|.+.||  |+.++
T Consensus       203 ~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~  282 (429)
T PRK01742        203 SQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGG  282 (429)
T ss_pred             CCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeECCCCCEEEEEEecCCcEEEEEEECCCC
Confidence            3468899999999999988764   369999987543323332333345689999999888764 57766555  43332


Q ss_pred             ceeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEe-CCCcEEEEe
Q 008496          348 EWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCS-DDVTAKIWN  426 (563)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s-~dg~i~iwd  426 (563)
                      .                                          ...+..+...+.++.|+|||+.|+.++ .++..+||+
T Consensus       283 ~------------------------------------------~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~  320 (429)
T PRK01742        283 T------------------------------------------PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYR  320 (429)
T ss_pred             C------------------------------------------eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEE
Confidence            2                                          122333455677899999999877655 578889998


Q ss_pred             CCCCc-eeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCE
Q 008496          427 MKQDK-YVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEY  505 (563)
Q Consensus       427 ~~~~~-~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~  505 (563)
                      +.... ....+ .+..  +...|+|+|.         .|+..+.++ +.+||+.+++.......+  ...+++|+|||++
T Consensus       321 ~~~~~~~~~~l-~~~~--~~~~~SpDG~---------~ia~~~~~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~  385 (429)
T PRK01742        321 MSASGGGASLV-GGRG--YSAQISADGK---------TLVMINGDN-VVKQDLTSGSTEVLSSTF--LDESPSISPNGIM  385 (429)
T ss_pred             EECCCCCeEEe-cCCC--CCccCCCCCC---------EEEEEcCCC-EEEEECCCCCeEEecCCC--CCCCceECCCCCE
Confidence            65322 22222 3333  4577888875         455555555 556999888754322222  2456889999999


Q ss_pred             EEEEeCCCcEEEEec--CCCeeEEEEec-CCCEEEEEEcCCC
Q 008496          506 LASGSLDKSMHIWSL--KEGKIVKTYTG-NGGIFEVCWNKEG  544 (563)
Q Consensus       506 lasgs~dg~v~iw~~--~~~~~~~~~~~-~~~i~~l~w~~~g  544 (563)
                      |+.++.++.+.+|.+  .+|+.++.+.. .+.+.+++|+|--
T Consensus       386 i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~wsp~~  427 (429)
T PRK01742        386 IIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKFPAWSPYL  427 (429)
T ss_pred             EEEEEcCCCceEEEEEECCCCceEEccCCCCCCCCcccCCCC
Confidence            999999998888876  35777777765 3457889999853

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.74  E-value=4.4e-16  Score=160.32  Aligned_cols=276  Identities=20%  Similarity=0.287  Sum_probs=200.5

Q ss_pred             CeEEEEECCCCCEEEEEeCCCeEEEEEcC-CceeEeeccCC---CCEEEEEeCC--CCCEEEEeeCCCcEEEEECCC---
Q 008496          276 DVTTLDWNGEGTLLATGSYDGQARIWSTN-GDLKCTLSKHK---GPIFSLKWNK--KGDYLLTGSCDKTAIVWDVKT---  346 (563)
Q Consensus       276 ~V~~l~~s~~g~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~---~~V~~l~~~~--~~~~l~s~s~D~~v~iwd~~~---  346 (563)
                      +-..+.|+|=...++++...-.|+|||-+ +.....|..+.   ..|+.+.+-.  +...+++|+.||.|+||+-..   
T Consensus      1066 ~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~ 1145 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKW 1145 (1387)
T ss_pred             CCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccccccc
Confidence            34567788877889998888899999965 44444454332   4578887753  446789999999999997432   


Q ss_pred             --CceeEEeee-------cccCeEEEecCCC-ceEEEEeCCCeEEEEEcCCCcceeeec-CCCcceeEEEECC-CCCEEE
Q 008496          347 --EEWKQQFEF-------HSGPTLDVDWRNN-VSFATSSTDNMIYVCKIGENRPIKTFA-GHQGEVNCVKWDP-TGSLLA  414 (563)
Q Consensus       347 --~~~~~~~~~-------~~~~~~~~~~~~~-~~~~~~~~d~~i~~~~~~~~~~~~~~~-~h~~~i~~~~~~~-~~~~la  414 (563)
                        .+.+..+..       ..+...-++|... ..+.+++.-..|++||......+..+. +...-|+++.-+. .|+.|+
T Consensus      1146 ~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~ 1225 (1387)
T KOG1517|consen 1146 KKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIA 1225 (1387)
T ss_pred             CCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEE
Confidence              223332221       1122356788644 456666667889999998877666554 3344567765543 469999


Q ss_pred             EEeCCCcEEEEeCCCC---ceeeeecccCCC--EEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEE--EEe
Q 008496          415 SCSDDVTAKIWNMKQD---KYVHDLREHSKE--IYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLL--YSL  487 (563)
Q Consensus       415 s~s~dg~i~iwd~~~~---~~~~~~~~~~~~--i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~--~~~  487 (563)
                      .|-.||.+|+||.+..   ..+...+.|+..  |..+.+.+.|-.        -|++|+.||.|++||++.....  .++
T Consensus      1226 AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~--------elvSgs~~G~I~~~DlR~~~~e~~~~i 1297 (1387)
T KOG1517|consen 1226 AGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLG--------ELVSGSQDGDIQLLDLRMSSKETFLTI 1297 (1387)
T ss_pred             EeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCc--------ceeeeccCCeEEEEecccCccccccee
Confidence            9999999999998743   346677888887  999999887753        4899999999999999974222  233


Q ss_pred             cCCC--C-CEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEec--------CCCEEEEEEcCCCCEEEEEECCCeE
Q 008496          488 NGHR--E-PVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTG--------NGGIFEVCWNKEGDKIAACFANHTV  556 (563)
Q Consensus       488 ~~h~--~-~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~--------~~~i~~l~w~~~g~~la~~~~~~~v  556 (563)
                      ..|.  + ..+++..+++...+|+|+. +.|+||++.. +.+..+..        .+.+.+|+|+|---.||+|+.|.+|
T Consensus      1298 v~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G-~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V 1375 (1387)
T KOG1517|consen 1298 VAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSG-EQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTV 1375 (1387)
T ss_pred             eeccccCccceeeeeccCCCeeeecCc-ceEEEEecCh-hhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceE
Confidence            3343  3 4899999999999999999 8999999864 33333322        3457899999999999999999999


Q ss_pred             EEEEe
Q 008496          557 CVLDF  561 (563)
Q Consensus       557 ~v~~~  561 (563)
                      .||..
T Consensus      1376 ~iYs~ 1380 (1387)
T KOG1517|consen 1376 SIYSC 1380 (1387)
T ss_pred             EEeec
Confidence            99964

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.73  E-value=4e-15  Score=136.50  Aligned_cols=275  Identities=24%  Similarity=0.406  Sum_probs=179.7

Q ss_pred             ceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCC-CEEEEEeCC
Q 008496          217 EVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG-TLLATGSYD  295 (563)
Q Consensus       217 ~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g-~~l~sg~~d  295 (563)
                      .+..++||+.-.-+|.+..|-+||+|+-... .          ...+++      .....|+||+|-|.+ .-|+.|.. 
T Consensus       100 dlr~~aWhqH~~~fava~nddvVriy~ksst-~----------pt~Lks------~sQrnvtclawRPlsaselavgCr-  161 (445)
T KOG2139|consen  100 DLRGVAWHQHIIAFAVATNDDVVRIYDKSST-C----------PTKLKS------VSQRNVTCLAWRPLSASELAVGCR-  161 (445)
T ss_pred             ceeeEeechhhhhhhhhccCcEEEEeccCCC-C----------Cceecc------hhhcceeEEEeccCCcceeeeeec-
Confidence            4678899997778899999999999985431 1          111222      224679999999964 55666665 


Q ss_pred             CeEEEEEcCCceeE---------------eeccCCCCEEEEEeCCCCCEEEEeeC-CCcEEEEECCCCceeEEeeecccC
Q 008496          296 GQARIWSTNGDLKC---------------TLSKHKGPIFSLKWNKKGDYLLTGSC-DKTAIVWDVKTEEWKQQFEFHSGP  359 (563)
Q Consensus       296 g~i~vw~~~~~~~~---------------~~~~h~~~V~~l~~~~~~~~l~s~s~-D~~v~iwd~~~~~~~~~~~~~~~~  359 (563)
                      +-|.+|..+.....               .-.+| .+|++++|+++|..+++++- |..|+|||+.++..+.        
T Consensus       162 ~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~p--------  232 (445)
T KOG2139|consen  162 AGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIP--------  232 (445)
T ss_pred             ceeEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccc--------
Confidence            56899986432111               12344 68999999999999999876 5679999998875332        


Q ss_pred             eEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeccc
Q 008496          360 TLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREH  439 (563)
Q Consensus       360 ~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~  439 (563)
                                                     +..  -.-+.++-+.||||+.+|..++-|+..++|+...........-.
T Consensus       233 -------------------------------L~~--~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lg  279 (445)
T KOG2139|consen  233 -------------------------------LIP--KGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILG  279 (445)
T ss_pred             -------------------------------ccc--cCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceecc
Confidence                                           111  12345778999999999999999999999965433222222234


Q ss_pred             CCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC----C--------e---EEEEe------cC---CCCCEE
Q 008496          440 SKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL----G--------K---LLYSL------NG---HREPVY  495 (563)
Q Consensus       440 ~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~----~--------~---~~~~~------~~---h~~~i~  495 (563)
                      .+.|.+.+|+|.|+        .+|.+++..  -++|.+..    +        +   .+..+      .+   ..+++.
T Consensus       280 sgrvqtacWspcGs--------fLLf~~sgs--p~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq  349 (445)
T KOG2139|consen  280 SGRVQTACWSPCGS--------FLLFACSGS--PRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQ  349 (445)
T ss_pred             CCceeeeeecCCCC--------EEEEEEcCC--ceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccc
Confidence            45899999999986        355555533  33343211    0        0   11111      11   135789


Q ss_pred             EEEEcCCCCEEEEEeCC--------CcEEEEecCCCeeEEEE----ecCCCEEEEEEcC---CCCEEEEEECCCeEEEEE
Q 008496          496 SLAFSPTGEYLASGSLD--------KSMHIWSLKEGKIVKTY----TGNGGIFEVCWNK---EGDKIAACFANHTVCVLD  560 (563)
Q Consensus       496 ~l~~spdg~~lasgs~d--------g~v~iw~~~~~~~~~~~----~~~~~i~~l~w~~---~g~~la~~~~~~~v~v~~  560 (563)
                      +++|.|.|.+||+--..        ..|.+||.+.--.+...    .+....--++|+|   +|..|.+|-+.|.+.-|+
T Consensus       350 ~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~yp  429 (445)
T KOG2139|consen  350 CLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYP  429 (445)
T ss_pred             eeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCCcEEEEEeccCceEeee
Confidence            99999999999975432        34677777654332221    1122233455555   678999998888887776


Q ss_pred             e
Q 008496          561 F  561 (563)
Q Consensus       561 ~  561 (563)
                      +
T Consensus       430 l  430 (445)
T KOG2139|consen  430 L  430 (445)
T ss_pred             e
Confidence            5

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.73  E-value=1.9e-15  Score=131.35  Aligned_cols=213  Identities=16%  Similarity=0.271  Sum_probs=161.2

Q ss_pred             CEEEEEeCCCCCEEEEeeCCCcEEEEECCCC----------ceeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcC
Q 008496          317 PIFSLKWNKKGDYLLTGSCDKTAIVWDVKTE----------EWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIG  386 (563)
Q Consensus       317 ~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~  386 (563)
                      .|++-+|+|.+++|++|+.+|+|.+..+...          ..+-.++.|.+|++.+.+.+.  |..++.||.|+-|...
T Consensus        12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~--~Lls~gdG~V~gw~W~   89 (325)
T KOG0649|consen   12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDD--FLLSGGDGLVYGWEWN   89 (325)
T ss_pred             HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehh--heeeccCceEEEeeeh
Confidence            4666789999999999999999999987531          223345778899999988743  4455667999888764


Q ss_pred             CCc------ceee--ecCC-----CcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEEEEEccCCC
Q 008496          387 ENR------PIKT--FAGH-----QGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGS  453 (563)
Q Consensus       387 ~~~------~~~~--~~~h-----~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~  453 (563)
                      +..      +.-.  ..-|     --+|+++-..|..+-++.++.|+.+..||+.+++...++++|+.-+.++.-.....
T Consensus        90 E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~  169 (325)
T KOG0649|consen   90 EEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANG  169 (325)
T ss_pred             hhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCc
Confidence            321      1100  0112     23689999999888888888999999999999999999999999999998632221


Q ss_pred             CCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecC---------C-CCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 008496          454 GTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNG---------H-REPVYSLAFSPTGEYLASGSLDKSMHIWSLKEG  523 (563)
Q Consensus       454 ~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~---------h-~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~  523 (563)
                               -++||+.||++||||+++++++..+..         | ...|-+++-+.  .+|+.|+.- .+.+|+++..
T Consensus       170 ---------qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~e--dWlvCGgGp-~lslwhLrss  237 (325)
T KOG0649|consen  170 ---------QILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNE--DWLVCGGGP-KLSLWHLRSS  237 (325)
T ss_pred             ---------ceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccC--ceEEecCCC-ceeEEeccCC
Confidence                     478999999999999999998876642         2 23466666544  488877754 5999999999


Q ss_pred             eeEEEEecCCCEEEEEEcCC
Q 008496          524 KIVKTYTGNGGIFEVCWNKE  543 (563)
Q Consensus       524 ~~~~~~~~~~~i~~l~w~~~  543 (563)
                      +...++.-...+-.+.|..|
T Consensus       238 e~t~vfpipa~v~~v~F~~d  257 (325)
T KOG0649|consen  238 ESTCVFPIPARVHLVDFVDD  257 (325)
T ss_pred             CceEEEecccceeEeeeecc
Confidence            99999887777878877544

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.73  E-value=6.4e-15  Score=135.74  Aligned_cols=235  Identities=19%  Similarity=0.281  Sum_probs=159.0

Q ss_pred             CCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecCCCceEEEEeCC-CeEEEEEcCCCcceeee
Q 008496          316 GPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTD-NMIYVCKIGENRPIKTF  394 (563)
Q Consensus       316 ~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~i~~~~~~~~~~~~~~  394 (563)
                      ..+..+.|+.+...|..|+.||. +++.................+...-|......+.+-.+ ..++++..+....+-.+
T Consensus         6 ~ti~~~~~Nqd~~~lsvGs~~Gy-k~~~~~~~~k~~~~~~~~~~IvEmLFSSSLvaiV~~~qpr~Lkv~~~Kk~~~ICe~   84 (391)
T KOG2110|consen    6 PTINFIGFNQDSTLLSVGSKDGY-KIFSCSPFEKCFSKDTEGVSIVEMLFSSSLVAIVSIKQPRKLKVVHFKKKTTICEI   84 (391)
T ss_pred             cceeeeeeccceeEEEccCCCce-eEEecCchHHhhcccCCCeEEEEeecccceeEEEecCCCceEEEEEcccCceEEEE
Confidence            34566678988888888888874 66655432210000111112333333333222222222 34666666554444332


Q ss_pred             cCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeccc-CCCEEEEEEccCCCCCCCCCCcEEEEE-Ee-CCC
Q 008496          395 AGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREH-SKEIYTIRWSPTGSGTNNPNQQLILAS-AS-FDS  471 (563)
Q Consensus       395 ~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~-~~~i~~~~~~p~~~~~~~~~~~~~l~s-~s-~dg  471 (563)
                      . ....|.++.++.  +.|+.+=.+. |.|||++..+.++++..- ..+---++++|+..       ..+||- ++ ..|
T Consensus        85 ~-fpt~IL~VrmNr--~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~-------n~ylAyp~s~t~G  153 (391)
T KOG2110|consen   85 F-FPTSILAVRMNR--KRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNA-------NCYLAYPGSTTSG  153 (391)
T ss_pred             e-cCCceEEEEEcc--ceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCC-------CceEEecCCCCCc
Confidence            2 245688888864  4455565554 999999999999887643 22222334444322       124443 22 358


Q ss_pred             eEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCc-EEEEecCCCeeEEEEecC---CCEEEEEEcCCCCEE
Q 008496          472 TVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKS-MHIWSLKEGKIVKTYTGN---GGIFEVCWNKEGDKI  547 (563)
Q Consensus       472 ~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~-v~iw~~~~~~~~~~~~~~---~~i~~l~w~~~g~~l  547 (563)
                      .|.|||+.+-+.+..+..|++++-+++|||+|.+|||||..|+ |+||.+.+|+.+..|.-.   ..|++|+|+||+++|
T Consensus       154 dV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L  233 (391)
T KOG2110|consen  154 DVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFL  233 (391)
T ss_pred             eEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeE
Confidence            9999999999999999999999999999999999999999997 699999999999888643   358899999999999


Q ss_pred             EEEECCCeEEEEEee
Q 008496          548 AACFANHTVCVLDFR  562 (563)
Q Consensus       548 a~~~~~~~v~v~~~~  562 (563)
                      ++.+..++|+||.+.
T Consensus       234 ~~sS~TeTVHiFKL~  248 (391)
T KOG2110|consen  234 AASSNTETVHIFKLE  248 (391)
T ss_pred             EEecCCCeEEEEEec
Confidence            999999999999774

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.71  E-value=1.3e-16  Score=151.57  Aligned_cols=290  Identities=22%  Similarity=0.355  Sum_probs=209.1

Q ss_pred             eEecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECC--CC
Q 008496          209 TILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG--EG  286 (563)
Q Consensus       209 ~~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~--~g  286 (563)
                      ..|.+|.+.|+.+.|+..|.+|+|||.|..+.+||+..+.......                .+|...|-...|-|  +.
T Consensus       136 ~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~----------------SGH~~NvfQaKFiP~s~d  199 (559)
T KOG1334|consen  136 KKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFE----------------SGHCNNVFQAKFIPFSGD  199 (559)
T ss_pred             hcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccc----------------cccccchhhhhccCCCCC
Confidence            4578999999999999999999999999999999997654321111                11223333334444  34


Q ss_pred             CEEEEEeCCCeEEEEEcC--Cce--eEeeccCCCCEEEEEeCCCCC-EEEEeeCCCcEEEEECCCCceeEEeeec--ccC
Q 008496          287 TLLATGSYDGQARIWSTN--GDL--KCTLSKHKGPIFSLKWNKKGD-YLLTGSCDKTAIVWDVKTEEWKQQFEFH--SGP  359 (563)
Q Consensus       287 ~~l~sg~~dg~i~vw~~~--~~~--~~~~~~h~~~V~~l~~~~~~~-~l~s~s~D~~v~iwd~~~~~~~~~~~~~--~~~  359 (563)
                      +.+++++.||.+|+=...  +..  ...+..|.++|..++.-|... -|++++.|+.+.-.|++.......+...  ..+
T Consensus       200 ~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~  279 (559)
T KOG1334|consen  200 RTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEK  279 (559)
T ss_pred             cCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCc
Confidence            678999999999987643  322  345678999999999998774 5899999999999999876544433221  111


Q ss_pred             ------eEEEecCCCceEEEEeCCCeEEEEEcCCC------cceeeecCCC------cceeEEEECCCCCEEEEEeCCCc
Q 008496          360 ------TLDVDWRNNVSFATSSTDNMIYVCKIGEN------RPIKTFAGHQ------GEVNCVKWDPTGSLLASCSDDVT  421 (563)
Q Consensus       360 ------~~~~~~~~~~~~~~~~~d~~i~~~~~~~~------~~~~~~~~h~------~~i~~~~~~~~~~~las~s~dg~  421 (563)
                            .+.++..+...|++++.|..+++|+.+.-      .++..|..|.      -.|+|++|+.++.-|.+.-.|--
T Consensus       280 ~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~  359 (559)
T KOG1334|consen  280 ERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDED  359 (559)
T ss_pred             cceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccc
Confidence                  23344556678999999999999987532      2344443332      35899999988776666777778


Q ss_pred             EEEEeCC--CC----------ceeee-ecccCC--CEEEEEE-ccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEE
Q 008496          422 AKIWNMK--QD----------KYVHD-LREHSK--EIYTIRW-SPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLY  485 (563)
Q Consensus       422 i~iwd~~--~~----------~~~~~-~~~~~~--~i~~~~~-~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~  485 (563)
                      |.++.-.  .+          .++.. +++|..  .|..+-| -|..         .+++|||.-|.|.||+-.+++.+.
T Consensus       360 IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrs---------EyVvSGSDCGhIFiW~K~t~eii~  430 (559)
T KOG1334|consen  360 IYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRS---------EYVVSGSDCGHIFIWDKKTGEIIR  430 (559)
T ss_pred             eEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCcc---------ceEEecCccceEEEEecchhHHHH
Confidence            8888432  12          12222 556643  3444443 2222         378999999999999999999988


Q ss_pred             EecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 008496          486 SLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEG  523 (563)
Q Consensus       486 ~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~  523 (563)
                      .+.+...-|+||-=+|--..||+.|-|..|+||...+.
T Consensus       431 ~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP~~~  468 (559)
T KOG1334|consen  431 FMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWTPLTA  468 (559)
T ss_pred             HhhcccceEeccCCCCCCchhhccCCccceeeecCCcc
Confidence            88887778999999999999999999999999987543

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.70  E-value=2.4e-15  Score=137.93  Aligned_cols=242  Identities=19%  Similarity=0.368  Sum_probs=163.6

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCeEEEEEcCCceeEeecc-CCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEe
Q 008496          275 KDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSK-HKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQF  353 (563)
Q Consensus       275 ~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~~~~~~~-h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~  353 (563)
                      .++..++|++.-..++++..|-.||+|+.+......+.. ....|++++|.|.+..-++.+.-+-|.+|.........  
T Consensus        99 ~dlr~~aWhqH~~~fava~nddvVriy~ksst~pt~Lks~sQrnvtclawRPlsaselavgCr~gIciW~~s~tln~~--  176 (445)
T KOG2139|consen   99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSSTCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAGICIWSDSRTLNAN--  176 (445)
T ss_pred             cceeeEeechhhhhhhhhccCcEEEEeccCCCCCceecchhhcceeEEEeccCCcceeeeeecceeEEEEcCcccccc--
Confidence            457889999988889999999999999987765555532 35679999999987655555556779999764221000  


Q ss_pred             eecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeC-CCcEEEEeCCCCce
Q 008496          354 EFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD-DVTAKIWNMKQDKY  432 (563)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~-dg~i~iwd~~~~~~  432 (563)
                           .                   .++... .....+....|| ..|++++|++||..+++++. |..|.|||..++..
T Consensus       177 -----r-------------------~~~~~s-~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~  230 (445)
T KOG2139|consen  177 -----R-------------------NIRMMS-THHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQK  230 (445)
T ss_pred             -----c-------------------cccccc-ccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCc
Confidence                 0                   000000 000122334556 68999999999999999886 67899999998877


Q ss_pred             eeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC-CeEEEEecCCCCCEEEEEEcCCCCEEEEEeC
Q 008496          433 VHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL-GKLLYSLNGHREPVYSLAFSPTGEYLASGSL  511 (563)
Q Consensus       433 ~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~-~~~~~~~~~h~~~i~~l~~spdg~~lasgs~  511 (563)
                      +.-.....+.+.-+.|+|++.         +|..+..|+..++|+... ..+..-.. -.+.|...+|+|+|++|.-+..
T Consensus       231 ~pL~~~glgg~slLkwSPdgd---------~lfaAt~davfrlw~e~q~wt~erw~l-gsgrvqtacWspcGsfLLf~~s  300 (445)
T KOG2139|consen  231 IPLIPKGLGGFSLLKWSPDGD---------VLFAATCDAVFRLWQENQSWTKERWIL-GSGRVQTACWSPCGSFLLFACS  300 (445)
T ss_pred             ccccccCCCceeeEEEcCCCC---------EEEEecccceeeeehhcccceecceec-cCCceeeeeecCCCCEEEEEEc
Confidence            654434556788999999986         788899999999995432 22222222 2348999999999988754332


Q ss_pred             CCcEEEEecC----CCe-----------eEEEE------ec----CCCEEEEEEcCCCCEEEEEECCCe
Q 008496          512 DKSMHIWSLK----EGK-----------IVKTY------TG----NGGIFEVCWNKEGDKIAACFANHT  555 (563)
Q Consensus       512 dg~v~iw~~~----~~~-----------~~~~~------~~----~~~i~~l~w~~~g~~la~~~~~~~  555 (563)
                      . .=.+|.+.    ...           ++..+      .+    .+++-.++|+|.|.+||+.+..+.
T Consensus       301 g-sp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~  368 (445)
T KOG2139|consen  301 G-SPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQS  368 (445)
T ss_pred             C-CceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCc
Confidence            2 22344432    110           11111      11    245678999999999999987654

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.69  E-value=7.1e-16  Score=144.51  Aligned_cols=196  Identities=24%  Similarity=0.320  Sum_probs=141.6

Q ss_pred             EEEEECCCCCEEEEEeCCCeEEEEE-cCCceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeec
Q 008496          278 TTLDWNGEGTLLATGSYDGQARIWS-TNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFH  356 (563)
Q Consensus       278 ~~l~~s~~g~~l~sg~~dg~i~vw~-~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~  356 (563)
                      .+++|+++|..+++|+.||.+|||+ ++-........|.+.|.+|.|+|+|+.|++.+.| ..+||+.+++..++.....
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~  226 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF  226 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence            7899999999999999999999999 5555556678899999999999999999999999 9999999988433322100


Q ss_pred             ccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCC-----CEEEEEeCCCcEEEEeCCCCc
Q 008496          357 SGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTG-----SLLASCSDDVTAKIWNMKQDK  431 (563)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~-----~~las~s~dg~i~iwd~~~~~  431 (563)
                           +    .+.                              .+..+.|+.|+     .+++....-+.|+.|++....
T Consensus       227 -----~----k~~------------------------------~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~  267 (398)
T KOG0771|consen  227 -----S----KDE------------------------------MFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWS  267 (398)
T ss_pred             -----c----cch------------------------------hhhhceecccCCCceEEEEEecCCCCceeEEEeeeec
Confidence                 0    000                              11122333332     122222233344444332111


Q ss_pred             -----eeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEe-cCCCCCEEEEEEcCCCCE
Q 008496          432 -----YVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSL-NGHREPVYSLAFSPTGEY  505 (563)
Q Consensus       432 -----~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~~h~~~i~~l~~spdg~~  505 (563)
                           ...........|.+++.+++|.         ++|.|+.||.|-|++..+-++++.. ..|...|+.+.|+||.++
T Consensus       268 ~~~~l~~~~~~~~~~siSsl~VS~dGk---------f~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~  338 (398)
T KOG0771|consen  268 GSNFLRLRKKIKRFKSISSLAVSDDGK---------FLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRY  338 (398)
T ss_pred             cccccchhhhhhccCcceeEEEcCCCc---------EEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCc
Confidence                 1111222335789999999986         8999999999999999888776654 579999999999999999


Q ss_pred             EEEEeCCCcEEEEecCC
Q 008496          506 LASGSLDKSMHIWSLKE  522 (563)
Q Consensus       506 lasgs~dg~v~iw~~~~  522 (563)
                      +++-+.|.+..|..+.-
T Consensus       339 ~~svSs~~~~~v~~l~v  355 (398)
T KOG0771|consen  339 LASVSSDNEAAVTKLAV  355 (398)
T ss_pred             ccccccCCceeEEEEee
Confidence            99999999888887653

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.69  E-value=7.9e-15  Score=137.56  Aligned_cols=194  Identities=22%  Similarity=0.298  Sum_probs=143.1

Q ss_pred             EEecCC-CceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecc--
Q 008496          362 DVDWRN-NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLRE--  438 (563)
Q Consensus       362 ~~~~~~-~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~--  438 (563)
                      .+.+.. +..+++++.||++++|+.....++.....|.++|.++.|+|||++|++-+.| ..+||+.+++..+.....  
T Consensus       149 ~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~~  227 (398)
T KOG0771|consen  149 VVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPFS  227 (398)
T ss_pred             EEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCcc
Confidence            344544 4778999999999999988888888888999999999999999999999999 999999999866554432  


Q ss_pred             cCCCEEEEEEccCCCCCCCCCCcEEEEE-EeCCCeEEEEeCCCCeE-----EEEecCCCCCEEEEEEcCCCCEEEEEeCC
Q 008496          439 HSKEIYTIRWSPTGSGTNNPNQQLILAS-ASFDSTVKLWDVELGKL-----LYSLNGHREPVYSLAFSPTGEYLASGSLD  512 (563)
Q Consensus       439 ~~~~i~~~~~~p~~~~~~~~~~~~~l~s-~s~dg~i~iwd~~~~~~-----~~~~~~h~~~i~~l~~spdg~~lasgs~d  512 (563)
                      .......++|+.++..     ..+++++ ...-+.|+.||+....-     ......-...|++++.|+||+++|.|+.|
T Consensus       228 k~~~~~~cRF~~d~~~-----~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~d  302 (398)
T KOG0771|consen  228 KDEMFSSCRFSVDNAQ-----ETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMD  302 (398)
T ss_pred             cchhhhhceecccCCC-----ceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccC
Confidence            2223445666655432     1123333 33345666666532111     11111123469999999999999999999


Q ss_pred             CcEEEEecCCCeeEEEEec--CCCEEEEEEcCCCCEEEEEECCCeEEEEEe
Q 008496          513 KSMHIWSLKEGKIVKTYTG--NGGIFEVCWNKEGDKIAACFANHTVCVLDF  561 (563)
Q Consensus       513 g~v~iw~~~~~~~~~~~~~--~~~i~~l~w~~~g~~la~~~~~~~v~v~~~  561 (563)
                      |.|.|+++.+-++++-.+.  .+-|++|.|+||.+.++.-+++.+.+|.-+
T Consensus       303 GsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l  353 (398)
T KOG0771|consen  303 GSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKL  353 (398)
T ss_pred             CcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEE
Confidence            9999999998777666543  345899999999999998888888887755

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.68  E-value=7.1e-14  Score=138.54  Aligned_cols=247  Identities=15%  Similarity=0.218  Sum_probs=154.1

Q ss_pred             CceEEEEECCCCCEEEEee-CCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEEeC
Q 008496          216 SEVCACAWSPAGSLLASGS-GDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSY  294 (563)
Q Consensus       216 ~~V~~~~~sp~~~~latgs-~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~  294 (563)
                      +....++++|++++|+.++ .++.|.+|++.....        +.  .....     ........++|+|+|++|+++++
T Consensus        35 ~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~--------l~--~~~~~-----~~~~~p~~i~~~~~g~~l~v~~~   99 (330)
T PRK11028         35 GQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGA--------LT--FAAES-----PLPGSPTHISTDHQGRFLFSASY   99 (330)
T ss_pred             CCCccEEECCCCCEEEEEECCCCcEEEEEECCCCc--------eE--Eeeee-----cCCCCceEEEECCCCCEEEEEEc
Confidence            4466789999999887664 588899999862110        00  01111     01124568999999999888775


Q ss_pred             -CCeEEEEEcC--Cce---eEeeccCCCCEEEEEeCCCCCEEEEe-eCCCcEEEEECCCCceeEEeeecccCeEEEecCC
Q 008496          295 -DGQARIWSTN--GDL---KCTLSKHKGPIFSLKWNKKGDYLLTG-SCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN  367 (563)
Q Consensus       295 -dg~i~vw~~~--~~~---~~~~~~h~~~V~~l~~~~~~~~l~s~-s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~  367 (563)
                       ++.+.+|+.+  +..   ...+. +.....+++++|++++++++ ..++.|.+||+.+........             
T Consensus       100 ~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~-------------  165 (330)
T PRK11028        100 NANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQE-------------  165 (330)
T ss_pred             CCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccC-------------
Confidence             7899999875  222   22222 22345778899999988654 456899999987532111000             


Q ss_pred             CceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeC-CCcEEEEeCCC--Cc--eeeeecccC--
Q 008496          368 NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD-DVTAKIWNMKQ--DK--YVHDLREHS--  440 (563)
Q Consensus       368 ~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~-dg~i~iwd~~~--~~--~~~~~~~~~--  440 (563)
                                          ...+....  ......++|+|+|++++++.. +++|.+|+++.  +.  .+..+..+.  
T Consensus       166 --------------------~~~~~~~~--g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~  223 (330)
T PRK11028        166 --------------------PAEVTTVE--GAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPAD  223 (330)
T ss_pred             --------------------CCceecCC--CCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCc
Confidence                                00000001  122457899999999877766 99999999873  22  233332211  


Q ss_pred             ----CCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCC---CCCEEEEEEcCCCCEEEEEeC-C
Q 008496          441 ----KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGH---REPVYSLAFSPTGEYLASGSL-D  512 (563)
Q Consensus       441 ----~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h---~~~i~~l~~spdg~~lasgs~-d  512 (563)
                          .....+.++|++.        .++++...++.|.+|++........+.++   ......++|+|||++|++++. +
T Consensus       224 ~~~~~~~~~i~~~pdg~--------~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~  295 (330)
T PRK11028        224 FSDTRWAADIHITPDGR--------HLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKS  295 (330)
T ss_pred             CCCCccceeEEECCCCC--------EEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccC
Confidence                1123477778764        34444455789999998643221122222   123457899999999988775 8


Q ss_pred             CcEEEEecC
Q 008496          513 KSMHIWSLK  521 (563)
Q Consensus       513 g~v~iw~~~  521 (563)
                      ++|.+|++.
T Consensus       296 ~~v~v~~~~  304 (330)
T PRK11028        296 HHISVYEID  304 (330)
T ss_pred             CcEEEEEEc
Confidence            999999874

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.68  E-value=5.5e-15  Score=133.63  Aligned_cols=237  Identities=20%  Similarity=0.323  Sum_probs=171.3

Q ss_pred             CCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEEeC
Q 008496          215 TSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSY  294 (563)
Q Consensus       215 ~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~  294 (563)
                      ..+|+|.+|++|++.+|.+-....+.||.......-           .   .......|...|+.++|+|..+.|++|+.
T Consensus        10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w-----------~---~~htls~Hd~~vtgvdWap~snrIvtcs~   75 (361)
T KOG1523|consen   10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLW-----------E---PAHTLSEHDKIVTGVDWAPKSNRIVTCSH   75 (361)
T ss_pred             cCceeeeeecCCCceEEeccCCceEEEEEecCCCCc-----------e---eceehhhhCcceeEEeecCCCCceeEccC
Confidence            367999999999999999999999999986543311           0   01122346788999999999999999999


Q ss_pred             CCeEEEEEc-CCc---eeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecCCCce
Q 008496          295 DGQARIWST-NGD---LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVS  370 (563)
Q Consensus       295 dg~i~vw~~-~~~---~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  370 (563)
                      |...+||.. .+.   ....+..|...++++.|+|.++.|++||.-+.|.||=.+...               +      
T Consensus        76 drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~EN---------------d------  134 (361)
T KOG1523|consen   76 DRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQEN---------------D------  134 (361)
T ss_pred             CCCccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEeccc---------------c------
Confidence            999999997 432   334567899999999999999999999999988888543221               0      


Q ss_pred             EEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCC-----C-------------Cce
Q 008496          371 FATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMK-----Q-------------DKY  432 (563)
Q Consensus       371 ~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~-----~-------------~~~  432 (563)
                                  |-+.  +.+  -+.+.+.|++++|+|++-+||.||.|+..||+..-     .             +..
T Consensus       135 ------------WWVs--Khi--kkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~l  198 (361)
T KOG1523|consen  135 ------------WWVS--KHI--KKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQL  198 (361)
T ss_pred             ------------eehh--hhh--CCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHH
Confidence                        1010  001  12245689999999999999999999999999741     0             112


Q ss_pred             eeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCe-EEEEecCCCCCEEEEEEcCCCCEEEEEeC
Q 008496          433 VHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK-LLYSLNGHREPVYSLAFSPTGEYLASGSL  511 (563)
Q Consensus       433 ~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~-~~~~~~~h~~~i~~l~~spdg~~lasgs~  511 (563)
                      ..++....+.+..+.|+|.|.         .|+-.+.|.++.+-|..... .+..+..-.-|..++.|-.+.. ++.++.
T Consensus       199 m~E~~~~ggwvh~v~fs~sG~---------~lawv~Hds~v~~~da~~p~~~v~~~~~~~lP~ls~~~ise~~-vv~ag~  268 (361)
T KOG1523|consen  199 MSEASSSGGWVHGVLFSPSGN---------RLAWVGHDSTVSFVDAAGPSERVQSVATAQLPLLSVSWISENS-VVAAGY  268 (361)
T ss_pred             HHhhccCCCceeeeEeCCCCC---------EeeEecCCCceEEeecCCCchhccchhhccCCceeeEeecCCc-eeecCC
Confidence            223334457799999999886         68899999999999987654 3333333336777777754433 333444


Q ss_pred             C
Q 008496          512 D  512 (563)
Q Consensus       512 d  512 (563)
                      |
T Consensus       269 ~  269 (361)
T KOG1523|consen  269 D  269 (361)
T ss_pred             C
Confidence            4

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.68  E-value=2.6e-13  Score=122.84  Aligned_cols=235  Identities=23%  Similarity=0.348  Sum_probs=160.8

Q ss_pred             CeEEEEECCCCCEEEEEeCCCeEEEEEcCCcee-EeeccCCCCEEEEEeCCCCCEE-EEeeCC------CcEEEEECCCC
Q 008496          276 DVTTLDWNGEGTLLATGSYDGQARIWSTNGDLK-CTLSKHKGPIFSLKWNKKGDYL-LTGSCD------KTAIVWDVKTE  347 (563)
Q Consensus       276 ~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~~-~~~~~h~~~V~~l~~~~~~~~l-~s~s~D------~~v~iwd~~~~  347 (563)
                      ...+++|+.|...+++|..+| .|||+.+.-.. .....+.+.+.-+..--..++| +.|+.+      +.|.|||-...
T Consensus         7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~   85 (346)
T KOG2111|consen    7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKE   85 (346)
T ss_pred             ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccC
Confidence            356699999999988887665 68998764111 1111222222111111123343 344443      57999996666


Q ss_pred             ceeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcC-CCcceeeecCCC--cceeEEEECCCCCEEEE-EeCCCcEE
Q 008496          348 EWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIG-ENRPIKTFAGHQ--GEVNCVKWDPTGSLLAS-CSDDVTAK  423 (563)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~-~~~~~~~~~~h~--~~i~~~~~~~~~~~las-~s~dg~i~  423 (563)
                      .++..+.+ ..++.++..+.+...+.  ..+.|++|... ..+.+..+..-.  ....+++-+.+..+||. |-.-|.|+
T Consensus        86 ~~i~el~f-~~~I~~V~l~r~riVvv--l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQ  162 (346)
T KOG2111|consen   86 RCIIELSF-NSEIKAVKLRRDRIVVV--LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQ  162 (346)
T ss_pred             cEEEEEEe-ccceeeEEEcCCeEEEE--ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEE
Confidence            66665554 34677777766654443  56789999887 334444443222  12334433333445554 44578999


Q ss_pred             EEeCCCCce--eeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCe-EEEEeCCCCeEEEEecC--CCCCEEEEE
Q 008496          424 IWNMKQDKY--VHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDST-VKLWDVELGKLLYSLNG--HREPVYSLA  498 (563)
Q Consensus       424 iwd~~~~~~--~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~-i~iwd~~~~~~~~~~~~--h~~~i~~l~  498 (563)
                      |-|+...+.  ...+.+|...|.+++.+-+|.         ++||+|..|+ |||||..+|..+.+++.  ....|++++
T Consensus       163 i~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt---------~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~ia  233 (346)
T KOG2111|consen  163 IVDLASTKPNAPSIINAHDSDIACVALNLQGT---------LVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIA  233 (346)
T ss_pred             EEEhhhcCcCCceEEEcccCceeEEEEcCCcc---------EEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEE
Confidence            999876655  467789999999999998886         8999999998 89999999999999853  235699999


Q ss_pred             EcCCCCEEEEEeCCCcEEEEecCCC
Q 008496          499 FSPTGEYLASGSLDKSMHIWSLKEG  523 (563)
Q Consensus       499 ~spdg~~lasgs~dg~v~iw~~~~~  523 (563)
                      |||++.+||++|..|+|+||.++..
T Consensus       234 FSp~~s~LavsSdKgTlHiF~l~~~  258 (346)
T KOG2111|consen  234 FSPNSSWLAVSSDKGTLHIFSLRDT  258 (346)
T ss_pred             eCCCccEEEEEcCCCeEEEEEeecC
Confidence            9999999999999999999998763

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.68  E-value=1.2e-14  Score=131.74  Aligned_cols=303  Identities=16%  Similarity=0.299  Sum_probs=194.9

Q ss_pred             CceEEEEECCCCC-EEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCC-EEEEEe
Q 008496          216 SEVCACAWSPAGS-LLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT-LLATGS  293 (563)
Q Consensus       216 ~~V~~~~~sp~~~-~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~-~l~sg~  293 (563)
                      +.|.-+.|..+.- .|.....|+.|.+|++....-               +.  .......++..++|||||+ +|.+..
T Consensus        49 dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew---------------~c--kIdeg~agls~~~WSPdgrhiL~tse  111 (447)
T KOG4497|consen   49 DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEW---------------YC--KIDEGQAGLSSISWSPDGRHILLTSE  111 (447)
T ss_pred             HHhhheeeeccceeeeeeeeccceEEEEEeeccee---------------EE--EeccCCCcceeeeECCCcceEeeeec
Confidence            3466688998865 455567899999999863221               11  1123356789999999994 566677


Q ss_pred             CCCeEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCc---EEEEECCCCceeEEeeecccCeEEEecCCCce
Q 008496          294 YDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKT---AIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVS  370 (563)
Q Consensus       294 ~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~---v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  370 (563)
                      .+-.|.+|++..+....+.-.+..+.+++|+|+|++.+.++.-..   +.|..-..-.....|........++.|.++..
T Consensus       112 F~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~  191 (447)
T KOG4497|consen  112 FDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGN  191 (447)
T ss_pred             ceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCc
Confidence            899999999987766666655667789999999999887765321   11111111122333433334455667765532


Q ss_pred             EEEEeCCCeEEEEEcCCCcceeeecCCC-cceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeee-------------
Q 008496          371 FATSSTDNMIYVCKIGENRPIKTFAGHQ-GEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDL-------------  436 (563)
Q Consensus       371 ~~~~~~d~~i~~~~~~~~~~~~~~~~h~-~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~-------------  436 (563)
                              .+.+|+.--.-.+..+  |. -.+..++|+|.+++|+.|+.|+.+||-+--+.++...+             
T Consensus       192 --------~laVwd~~Leykv~aY--e~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~  261 (447)
T KOG4497|consen  192 --------WLAVWDNVLEYKVYAY--ERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHL  261 (447)
T ss_pred             --------EEEEecchhhheeeee--eeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhh
Confidence                    3445553222222222  22 25778999999999999999999988543222211110             


Q ss_pred             -----------------------ccc------------------------------CCCEEEEEEccCCCCCCCCCCcEE
Q 008496          437 -----------------------REH------------------------------SKEIYTIRWSPTGSGTNNPNQQLI  463 (563)
Q Consensus       437 -----------------------~~~------------------------------~~~i~~~~~~p~~~~~~~~~~~~~  463 (563)
                                             .+|                              ...+..++|+++.         .+
T Consensus       262 ~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds---------~y  332 (447)
T KOG4497|consen  262 LEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDS---------TY  332 (447)
T ss_pred             hhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCc---------eE
Confidence                                   000                              0011223333332         25


Q ss_pred             EEEEe--CCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEecCCCEEEEEEc
Q 008496          464 LASAS--FDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWN  541 (563)
Q Consensus       464 l~s~s--~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~~~~i~~l~w~  541 (563)
                      +++-.  .-+.+-+||+++.+....+. ...+|....|.|....|+.+....++++|....-..+..-...-.|.+++|+
T Consensus       333 ~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP~~prL~vctg~srLY~W~psg~~~V~vP~~GF~i~~l~W~  411 (447)
T KOG4497|consen  333 AATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGVPKKGFNIQKLQWL  411 (447)
T ss_pred             EeeecCCCCceEEEEechhhhhhhhhh-hccceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEecCCCCceeeeEEec
Confidence            55542  33578999998766544443 4568999999999999998888888999998765555554434468899999


Q ss_pred             CCCCEEEEEECCCe
Q 008496          542 KEGDKIAACFANHT  555 (563)
Q Consensus       542 ~~g~~la~~~~~~~  555 (563)
                      -+|..++.++.|.-
T Consensus       412 ~~g~~i~l~~kDaf  425 (447)
T KOG4497|consen  412 QPGEFIVLCGKDAF  425 (447)
T ss_pred             CCCcEEEEEcCCce
Confidence            99999999988863

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.67  E-value=1e-14  Score=132.17  Aligned_cols=301  Identities=18%  Similarity=0.311  Sum_probs=190.9

Q ss_pred             EEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEE-eCCCeE
Q 008496          220 ACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATG-SYDGQA  298 (563)
Q Consensus       220 ~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg-~~dg~i  298 (563)
                      -|+|||+|+++|+.+.- .+.|=|..+-..              .++-..    -..|.-+.|..|..+++.+ +.++.|
T Consensus        13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~--------------~qlf~c----ldki~yieW~ads~~ilC~~yk~~~v   73 (447)
T KOG4497|consen   13 FCSFSPCGNYIASLSRY-RLVIRDSETLQL--------------HQLFLC----LDKIVYIEWKADSCHILCVAYKDPKV   73 (447)
T ss_pred             ceeECCCCCeeeeeeee-EEEEeccchhhH--------------HHHHHH----HHHhhheeeeccceeeeeeeeccceE
Confidence            47899999999998643 555555432110              000000    1346778899988777765 567899


Q ss_pred             EEEEcCC-ceeEeeccCCCCEEEEEeCCCCCEE-EEeeCCCcEEEEECCCCceeEEeeecccCeEEEecCCCceEEEEeC
Q 008496          299 RIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYL-LTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSST  376 (563)
Q Consensus       299 ~vw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l-~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  376 (563)
                      .+|+... .-.+.+..-..++.+++|+|+|+.+ .+..-|-.|.+|.+.+...... ......+..+.+..+..|++-..
T Consensus        74 qvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~-~~pK~~~kg~~f~~dg~f~ai~s  152 (447)
T KOG4497|consen   74 QVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLL-PHPKTNVKGYAFHPDGQFCAILS  152 (447)
T ss_pred             EEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEe-cccccCceeEEECCCCceeeeee
Confidence            9999754 5566778888899999999999665 4666788999999987654321 11122234455555655543221


Q ss_pred             CC--e--EEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEEEEEccCC
Q 008496          377 DN--M--IYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTG  452 (563)
Q Consensus       377 d~--~--i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~  452 (563)
                      ..  .  +.+..-..-..++.|.-.+-..+.+.|+|||..||.         ||.--...+. .....-.+..+.|+|.+
T Consensus       153 RrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laV---------wd~~Leykv~-aYe~~lG~k~v~wsP~~  222 (447)
T KOG4497|consen  153 RRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAV---------WDNVLEYKVY-AYERGLGLKFVEWSPCN  222 (447)
T ss_pred             cccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEE---------ecchhhheee-eeeeccceeEEEecccc
Confidence            11  0  000000000122334444556778999999998874         4421111110 01122457889999977


Q ss_pred             CCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEE------------------------------------------------
Q 008496          453 SGTNNPNQQLILASASFDSTVKLWDVELGKLL------------------------------------------------  484 (563)
Q Consensus       453 ~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~------------------------------------------------  484 (563)
                      .         +|+.|+.|+.+|+-+--+-+..                                                
T Consensus       223 q---------flavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se  293 (447)
T KOG4497|consen  223 Q---------FLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESE  293 (447)
T ss_pred             c---------eEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccch
Confidence            5         8999999999998642111000                                                


Q ss_pred             ------------EEec------CCCCCEEEEEEcCCCCEEEEEeC--CCcEEEEecCCCeeEEEEecCCCEEEEEEcCCC
Q 008496          485 ------------YSLN------GHREPVYSLAFSPTGEYLASGSL--DKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEG  544 (563)
Q Consensus       485 ------------~~~~------~h~~~i~~l~~spdg~~lasgs~--dg~v~iw~~~~~~~~~~~~~~~~i~~l~w~~~g  544 (563)
                                  ..++      ...-.+.-++||+|..|+||-..  -+.+.+||++.-++-..+.....|....|+|.-
T Consensus       294 ~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQk~piraf~WdP~~  373 (447)
T KOG4497|consen  294 TIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLIQKHPIRAFEWDPGR  373 (447)
T ss_pred             hhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhhhccceeEEEeCCCC
Confidence                        0000      00113566899999999998654  468999999988776666667789999999999


Q ss_pred             CEEEEEECCCeEEEE
Q 008496          545 DKIAACFANHTVCVL  559 (563)
Q Consensus       545 ~~la~~~~~~~v~v~  559 (563)
                      ..|++|.+...+..|
T Consensus       374 prL~vctg~srLY~W  388 (447)
T KOG4497|consen  374 PRLVVCTGKSRLYFW  388 (447)
T ss_pred             ceEEEEcCCceEEEE
Confidence            999999877776666

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.67  E-value=1.5e-13  Score=136.09  Aligned_cols=306  Identities=16%  Similarity=0.193  Sum_probs=188.6

Q ss_pred             EEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCe-EEEEECCCCCEEEEEeCCCeEEEEEcCC-ce
Q 008496          230 LASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDV-TTLDWNGEGTLLATGSYDGQARIWSTNG-DL  307 (563)
Q Consensus       230 latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V-~~l~~s~~g~~l~sg~~dg~i~vw~~~~-~~  307 (563)
                      +++-..++.+.+.|..+.+.             +..+..     ...+ ..+.++|||+++.+++.||.|.++|+.. +.
T Consensus         9 ~V~~~~~~~v~viD~~t~~~-------------~~~i~~-----~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~   70 (369)
T PF02239_consen    9 YVVERGSGSVAVIDGATNKV-------------VARIPT-----GGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKV   70 (369)
T ss_dssp             EEEEGGGTEEEEEETTT-SE-------------EEEEE------STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSE
T ss_pred             EEEecCCCEEEEEECCCCeE-------------EEEEcC-----CCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccE
Confidence            34556789999999765432             111111     1223 3467999999999999999999999864 45


Q ss_pred             eEeeccCCCCEEEEEeCCCCCEEEEee-CCCcEEEEECCCCceeEEeeeccc-------CeEEE-ecCCCceEEEEeC-C
Q 008496          308 KCTLSKHKGPIFSLKWNKKGDYLLTGS-CDKTAIVWDVKTEEWKQQFEFHSG-------PTLDV-DWRNNVSFATSST-D  377 (563)
Q Consensus       308 ~~~~~~h~~~V~~l~~~~~~~~l~s~s-~D~~v~iwd~~~~~~~~~~~~~~~-------~~~~~-~~~~~~~~~~~~~-d  377 (563)
                      ..++..- ....+++++++|++++++. .++.+.++|.++.+.++.+.....       .+..+ .-.....|+..-. .
T Consensus        71 v~~i~~G-~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~  149 (369)
T PF02239_consen   71 VATIKVG-GNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDT  149 (369)
T ss_dssp             EEEEE-S-SEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTT
T ss_pred             EEEEecC-CCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccC
Confidence            5555443 3457899999999988665 689999999999988887654321       22233 2234444665544 4


Q ss_pred             CeEEEEEcCCCccee-eecCCCcceeEEEECCCCCEEEEE-eCCCcEEEEeCCCCceeeeec----ccCCCEEEE-----
Q 008496          378 NMIYVCKIGENRPIK-TFAGHQGEVNCVKWDPTGSLLASC-SDDVTAKIWNMKQDKYVHDLR----EHSKEIYTI-----  446 (563)
Q Consensus       378 ~~i~~~~~~~~~~~~-~~~~h~~~i~~~~~~~~~~~las~-s~dg~i~iwd~~~~~~~~~~~----~~~~~i~~~-----  446 (563)
                      +.|.+.+....++.. .............|+|++++++.+ ..+..|-++|..+++.+..+.    .|..+...+     
T Consensus       150 ~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~  229 (369)
T PF02239_consen  150 GEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGF  229 (369)
T ss_dssp             TEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTT
T ss_pred             CeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCc
Confidence            788888876654432 222223345678999999987654 456789999999888765442    233333322     


Q ss_pred             --EEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEE----eCCCcEEEEec
Q 008496          447 --RWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASG----SLDKSMHIWSL  520 (563)
Q Consensus       447 --~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasg----s~dg~v~iw~~  520 (563)
                        .|...+..      ...+ +.-..+.+.+||..+.+.+.++.....+ .-+.-||+++++.+.    ...++|.++|.
T Consensus       230 g~vw~~~~~~------~~~~-~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~  301 (369)
T PF02239_consen  230 GPVWATSGLG------YFAI-PLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDK  301 (369)
T ss_dssp             EEEEEEEBSS------SSEE-EEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEEC
T ss_pred             ceEEeecccc------ceec-ccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEEC
Confidence              13222111      1122 2222346778999999999999877777 778889999999887    44589999999


Q ss_pred             CCCeeEEEEecCCC--EEEEEEcCCCCEEEEEE--CCCeEEEEEee
Q 008496          521 KEGKIVKTYTGNGG--IFEVCWNKEGDKIAACF--ANHTVCVLDFR  562 (563)
Q Consensus       521 ~~~~~~~~~~~~~~--i~~l~w~~~g~~la~~~--~~~~v~v~~~~  562 (563)
                      ++.+.+.++....+  +..+.|++||+.+-++.  .++.|.|||-+
T Consensus       302 ~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~  347 (369)
T PF02239_consen  302 KTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAK  347 (369)
T ss_dssp             CGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETT
T ss_pred             cCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECC
Confidence            99988888765444  99999999999766653  34479999853

...

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.66  E-value=2.3e-15  Score=147.08  Aligned_cols=234  Identities=17%  Similarity=0.328  Sum_probs=167.8

Q ss_pred             CCCEEEE--EeCCCeEEEEEcC--CceeE-eec--cCCCCEEEEEeCC-CCCEEEEeeCCCcEEEEECCCCceeEEeeec
Q 008496          285 EGTLLAT--GSYDGQARIWSTN--GDLKC-TLS--KHKGPIFSLKWNK-KGDYLLTGSCDKTAIVWDVKTEEWKQQFEFH  356 (563)
Q Consensus       285 ~g~~l~s--g~~dg~i~vw~~~--~~~~~-~~~--~h~~~V~~l~~~~-~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~  356 (563)
                      +...+++  ++.-|.|-||+++  |++.. .+.  .....|+.+.|.| +..+|+.++.||.|++|.+..+.....    
T Consensus       590 n~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~----  665 (1012)
T KOG1445|consen  590 NNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPEN----  665 (1012)
T ss_pred             ccceEEEEecCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcc----
Confidence            4445554  3556899999875  33221 111  2356799999999 567899999999999998876532211    


Q ss_pred             ccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCC-CCEEEEEeCCCcEEEEeCCCCceeee
Q 008496          357 SGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT-GSLLASCSDDVTAKIWNMKQDKYVHD  435 (563)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~-~~~las~s~dg~i~iwd~~~~~~~~~  435 (563)
                                                    ...|-..+.+|...|+++.|+|- ...|++++.|.+|++||+.+.+....
T Consensus       666 ------------------------------~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~  715 (1012)
T KOG1445|consen  666 ------------------------------EMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSR  715 (1012)
T ss_pred             ------------------------------cCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhhe
Confidence                                          12455677889999999999995 56889999999999999999998889


Q ss_pred             ecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeE-EEEecCCC-CCEEEEEEcCCCCEEEEEeCC-
Q 008496          436 LREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKL-LYSLNGHR-EPVYSLAFSPTGEYLASGSLD-  512 (563)
Q Consensus       436 ~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~-~~~~~~h~-~~i~~l~~spdg~~lasgs~d-  512 (563)
                      +.+|++.|..++|+|+|.         .+|+.+.||+|++|+.+++.. ++.-++-. ..--.|.|.-||++++..+.| 
T Consensus       716 l~gHtdqIf~~AWSpdGr---------~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk  786 (1012)
T KOG1445|consen  716 LVGHTDQIFGIAWSPDGR---------RIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDK  786 (1012)
T ss_pred             eccCcCceeEEEECCCCc---------ceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccc
Confidence            999999999999999997         789999999999999887653 44332211 122457888999999988877 


Q ss_pred             ---CcEEEEecCCCe--eEEE--EecCCCEEEEEEcCCCCEE-EEEECCCeEEEEEe
Q 008496          513 ---KSMHIWSLKEGK--IVKT--YTGNGGIFEVCWNKEGDKI-AACFANHTVCVLDF  561 (563)
Q Consensus       513 ---g~v~iw~~~~~~--~~~~--~~~~~~i~~l~w~~~g~~l-a~~~~~~~v~v~~~  561 (563)
                         .+|.+||..+-.  .+.+  +.....+.--.+++|.+.| .+|-+|..|..|.+
T Consensus       787 ~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv  843 (1012)
T KOG1445|consen  787 SSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEV  843 (1012)
T ss_pred             cchhhhhhhhhhhccCCcceeeeecccCccccccccCCCceEEEecCCCceEEEEEe
Confidence               468999987533  2222  1212223333466776644 45666777776654

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.65  E-value=4.6e-15  Score=142.66  Aligned_cols=220  Identities=20%  Similarity=0.352  Sum_probs=158.2

Q ss_pred             CCCCCEEEEEeCCCeEEEEEcCCceeEe-----eccCCCCEEEEEeCCCC-CEEEEeeCCCcEEEEECCCCceeEEeeec
Q 008496          283 NGEGTLLATGSYDGQARIWSTNGDLKCT-----LSKHKGPIFSLKWNKKG-DYLLTGSCDKTAIVWDVKTEEWKQQFEFH  356 (563)
Q Consensus       283 s~~g~~l~sg~~dg~i~vw~~~~~~~~~-----~~~h~~~V~~l~~~~~~-~~l~s~s~D~~v~iwd~~~~~~~~~~~~~  356 (563)
                      .+.|--++.|-..|.+.+.+........     ..-.+..|++++|-|.+ ..++.+-.+|.+.++|.....      ..
T Consensus       182 ~~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~------~~  255 (636)
T KOG2394|consen  182 TPKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVC------GA  255 (636)
T ss_pred             CCCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccc------cC
Confidence            3567778888888999988864321111     11234789999999866 456777889999999862110      00


Q ss_pred             ccCeEEEecCCCceEEEEeCCCeEEEEEcC-CCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeee
Q 008496          357 SGPTLDVDWRNNVSFATSSTDNMIYVCKIG-ENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHD  435 (563)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~-~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~  435 (563)
                      ..+.. ........|+       |..|.-. ...|+..+.--.+.|+..+|+|||++||+.|.||.+||||+.+...+..
T Consensus       256 t~p~~-~~~k~~~~f~-------i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~  327 (636)
T KOG2394|consen  256 TAPSY-QALKDGDQFA-------ILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGV  327 (636)
T ss_pred             CCCcc-cccCCCCeeE-------EeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHH
Confidence            00000 0011112222       1112111 1244444444456899999999999999999999999999999888777


Q ss_pred             ecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcC--------------
Q 008496          436 LREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSP--------------  501 (563)
Q Consensus       436 ~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp--------------  501 (563)
                      ++..-+...|++|+|+|+         +|++|+.|.-|.||.+..++.+..-.+|+.+|..|+|.|              
T Consensus       328 mkSYFGGLLCvcWSPDGK---------yIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDpytt~~ee~~~~~~~  398 (636)
T KOG2394|consen  328 MKSYFGGLLCVCWSPDGK---------YIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDPYTTSTEEWNNFSGM  398 (636)
T ss_pred             HHhhccceEEEEEcCCcc---------EEEecCCcceEEEEEeccceEEEeccccccceeeEeecccccccccccccccc
Confidence            777778899999999997         899999999999999999999999999999999999983              


Q ss_pred             -----------------C-----------------CCEEEEEeCCCcEEEEecCCCee
Q 008496          502 -----------------T-----------------GEYLASGSLDKSMHIWSLKEGKI  525 (563)
Q Consensus       502 -----------------d-----------------g~~lasgs~dg~v~iw~~~~~~~  525 (563)
                                       +                 ...|.+.+.|.++.+||+..-.+
T Consensus       399 ~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD~L  456 (636)
T KOG2394|consen  399 DSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTEDVL  456 (636)
T ss_pred             cccccchhcccccccCCCCCcCCCcccccccccceEEEeecccccceEEEEecchhhc
Confidence                             1                 12477888999999999865433

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.65  E-value=1e-13  Score=125.41  Aligned_cols=235  Identities=15%  Similarity=0.242  Sum_probs=161.2

Q ss_pred             CEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeeccc--CeEEEecCCCceEEEEeCC------CeEEEEEcCCC
Q 008496          317 PIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSG--PTLDVDWRNNVSFATSSTD------NMIYVCKIGEN  388 (563)
Q Consensus       317 ~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~d------~~i~~~~~~~~  388 (563)
                      ...+++|+.|...++.|. |.-.+||+.+.-+....-..+.+  .+..+-++.+.....++.+      +.+.+||--..
T Consensus         7 ~~lsvs~NQD~ScFava~-~~Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~   85 (346)
T KOG2111|consen    7 KTLSVSFNQDHSCFAVAT-DTGFRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKE   85 (346)
T ss_pred             ceeEEEEccCCceEEEEe-cCceEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccC
Confidence            455699999988777765 44579998765322111111111  2223334444444444443      47899997777


Q ss_pred             cceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCC-CCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEE
Q 008496          389 RPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMK-QDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASA  467 (563)
Q Consensus       389 ~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~-~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~  467 (563)
                      +++..+. ...+|.++.+.++  .|+.. ..+.|.||.+. .-+.++.+.....+---.+..|..      +...+..-|
T Consensus        86 ~~i~el~-f~~~I~~V~l~r~--riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~------~k~~LafPg  155 (346)
T KOG2111|consen   86 RCIIELS-FNSEIKAVKLRRD--RIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTS------NKSLLAFPG  155 (346)
T ss_pred             cEEEEEE-eccceeeEEEcCC--eEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCC------CceEEEcCC
Confidence            8887765 4678999999865  34333 35689999876 344444433221111111222321      122233345


Q ss_pred             eCCCeEEEEeCCCCeE--EEEecCCCCCEEEEEEcCCCCEEEEEeCCCc-EEEEecCCCeeEEEEec---CCCEEEEEEc
Q 008496          468 SFDSTVKLWDVELGKL--LYSLNGHREPVYSLAFSPTGEYLASGSLDKS-MHIWSLKEGKIVKTYTG---NGGIFEVCWN  541 (563)
Q Consensus       468 s~dg~i~iwd~~~~~~--~~~~~~h~~~i~~l~~spdg~~lasgs~dg~-v~iw~~~~~~~~~~~~~---~~~i~~l~w~  541 (563)
                      -.-|.|+|-|+...+.  ...+.+|...|.+++.+-+|..+||+|..|+ |+|||..+|+++..+..   ...|++++||
T Consensus       156 ~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFS  235 (346)
T KOG2111|consen  156 FKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFS  235 (346)
T ss_pred             CccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeC
Confidence            5679999999876554  4678899999999999999999999999996 79999999999988853   4569999999


Q ss_pred             CCCCEEEEEECCCeEEEEEee
Q 008496          542 KEGDKIAACFANHTVCVLDFR  562 (563)
Q Consensus       542 ~~g~~la~~~~~~~v~v~~~~  562 (563)
                      |++.+||+++..|++.|+.++
T Consensus       236 p~~s~LavsSdKgTlHiF~l~  256 (346)
T KOG2111|consen  236 PNSSWLAVSSDKGTLHIFSLR  256 (346)
T ss_pred             CCccEEEEEcCCCeEEEEEee
Confidence            999999999999999999876

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.64  E-value=2.7e-14  Score=128.51  Aligned_cols=149  Identities=21%  Similarity=0.518  Sum_probs=110.7

Q ss_pred             EEEECCCCCEEEEEeC----------CCcEEEEeCCC-Cceeeeecc-cCCCEEEEEEccCCCCCCCCCCcEEEEEEeCC
Q 008496          403 CVKWDPTGSLLASCSD----------DVTAKIWNMKQ-DKYVHDLRE-HSKEIYTIRWSPTGSGTNNPNQQLILASASFD  470 (563)
Q Consensus       403 ~~~~~~~~~~las~s~----------dg~i~iwd~~~-~~~~~~~~~-~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~d  470 (563)
                      .+.|+|+|..|+.-..          -+...||.++. +..+..+.- ..++|..++|+|++.       ...+++|..+
T Consensus        10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~-------~favi~g~~~   82 (194)
T PF08662_consen   10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGN-------EFAVIYGSMP   82 (194)
T ss_pred             EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCC-------EEEEEEccCC
Confidence            5789999987654332          12355665532 223333332 345799999999875       2445667788


Q ss_pred             CeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCC---CcEEEEecCCCeeEEEEecCCCEEEEEEcCCCCEE
Q 008496          471 STVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLD---KSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKI  547 (563)
Q Consensus       471 g~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~d---g~v~iw~~~~~~~~~~~~~~~~i~~l~w~~~g~~l  547 (563)
                      +.|.|||++ ++.+..+.  ..+++.|.|||+|++||+|+.+   |.|.+||+++.+.+.++... .+..++|+|||++|
T Consensus        83 ~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~-~~t~~~WsPdGr~~  158 (194)
T PF08662_consen   83 AKVTLYDVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHS-DATDVEWSPDGRYL  158 (194)
T ss_pred             cccEEEcCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccC-cEEEEEEcCCCCEE
Confidence            999999997 77777764  4578999999999999998754   67999999999988887644 57899999999999


Q ss_pred             EEEEC------CCeEEEEEee
Q 008496          548 AACFA------NHTVCVLDFR  562 (563)
Q Consensus       548 a~~~~------~~~v~v~~~~  562 (563)
                      +++..      |..+.||++.
T Consensus       159 ~ta~t~~r~~~dng~~Iw~~~  179 (194)
T PF08662_consen  159 ATATTSPRLRVDNGFKIWSFQ  179 (194)
T ss_pred             EEEEeccceeccccEEEEEec
Confidence            98864      5667888863

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.64  E-value=1.7e-13  Score=140.73  Aligned_cols=212  Identities=13%  Similarity=0.137  Sum_probs=146.1

Q ss_pred             CeEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEEEeeC---CCcEEEEECCCCceeEEeeecccCeEEEecCCCceEE
Q 008496          296 GQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSC---DKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFA  372 (563)
Q Consensus       296 g~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~---D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  372 (563)
                      ..|.+||.+|.....+..|..++.+.+|+|+|+.|+..+.   +..|.+||+.++....                     
T Consensus       182 ~~l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~---------------------  240 (435)
T PRK05137        182 KRLAIMDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQREL---------------------  240 (435)
T ss_pred             eEEEEECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEE---------------------
Confidence            3788889888877778888999999999999999887653   3578888887654211                     


Q ss_pred             EEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEE-EEeCCCc--EEEEeCCCCceeeeecccCCCEEEEEEc
Q 008496          373 TSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLA-SCSDDVT--AKIWNMKQDKYVHDLREHSKEIYTIRWS  449 (563)
Q Consensus       373 ~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~la-s~s~dg~--i~iwd~~~~~~~~~~~~~~~~i~~~~~~  449 (563)
                                           +..+.+.+.+.+|+|||+.|+ +.+.++.  |.+||+.++.. ..+..+........|+
T Consensus       241 ---------------------l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~s  298 (435)
T PRK05137        241 ---------------------VGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYS  298 (435)
T ss_pred             ---------------------eecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEc
Confidence                                 112334456789999998765 5566665  66678877654 3455566666778999


Q ss_pred             cCCCCCCCCCCcEEEEEEe-CCC--eEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCC---CcEEEEecCCC
Q 008496          450 PTGSGTNNPNQQLILASAS-FDS--TVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLD---KSMHIWSLKEG  523 (563)
Q Consensus       450 p~~~~~~~~~~~~~l~s~s-~dg--~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~d---g~v~iw~~~~~  523 (563)
                      |+|.         .|+..+ .+|  .|.+||+..+.. ..+..+...+....|||||++|+..+.+   ..|.+|++..+
T Consensus       299 pDG~---------~i~f~s~~~g~~~Iy~~d~~g~~~-~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~  368 (435)
T PRK05137        299 PDGS---------QIVFESDRSGSPQLYVMNADGSNP-RRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGS  368 (435)
T ss_pred             CCCC---------EEEEEECCCCCCeEEEEECCCCCe-EEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCC
Confidence            9885         333333 333  688888876544 3343344556778999999999876643   36888887654


Q ss_pred             eeEEEEecCCCEEEEEEcCCCCEEEEEECC------CeEEEEEe
Q 008496          524 KIVKTYTGNGGIFEVCWNKEGDKIAACFAN------HTVCVLDF  561 (563)
Q Consensus       524 ~~~~~~~~~~~i~~l~w~~~g~~la~~~~~------~~v~v~~~  561 (563)
                      . .+.+.....+..++|+|||+.|++...+      ..+.++|+
T Consensus       369 ~-~~~lt~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl  411 (435)
T PRK05137        369 G-ERILTSGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDL  411 (435)
T ss_pred             c-eEeccCCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEEC
Confidence            4 3344333356788999999999876543      24566664

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.63  E-value=6.8e-14  Score=129.49  Aligned_cols=277  Identities=17%  Similarity=0.290  Sum_probs=191.1

Q ss_pred             cCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCc-------eeEe-eccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEE
Q 008496          272 EKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGD-------LKCT-LSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWD  343 (563)
Q Consensus       272 ~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~-------~~~~-~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd  343 (563)
                      +|.+.|.++.||.++++|++|+.|..+++|.++..       .+.. -..|.+.|++|+|+..+..+++|..+++|.+.|
T Consensus        54 ~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HD  133 (609)
T KOG4227|consen   54 EHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHD  133 (609)
T ss_pred             hhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeee
Confidence            45678999999999999999999999999997532       1111 134678999999999999999999999999999


Q ss_pred             CCCCceeEEeeecc--cCeEEEecC-CCceEEEEeCCCeEEEEEcCCCc-ceeee--cCCCcceeEEEECCCC-CEEEEE
Q 008496          344 VKTEEWKQQFEFHS--GPTLDVDWR-NNVSFATSSTDNMIYVCKIGENR-PIKTF--AGHQGEVNCVKWDPTG-SLLASC  416 (563)
Q Consensus       344 ~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~d~~i~~~~~~~~~-~~~~~--~~h~~~i~~~~~~~~~-~~las~  416 (563)
                      +.+.+.+-.+....  +.++.++-. .+..|++.+.++.|.+|+.+... ++..+  ........++.|+|.. .+|++.
T Consensus       134 iEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~  213 (609)
T KOG4227|consen  134 IETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVN  213 (609)
T ss_pred             cccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEec
Confidence            99987766554322  456665543 36788999999999999998755 33322  2223456678899975 577899


Q ss_pred             eCCCcEEEEeCCCCce-ee------eecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeE-EEEec
Q 008496          417 SDDVTAKIWNMKQDKY-VH------DLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKL-LYSLN  488 (563)
Q Consensus       417 s~dg~i~iwd~~~~~~-~~------~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~-~~~~~  488 (563)
                      +..+-+.+||.+.... +.      .+......-.++.|+|.|..         +.+--.-..-.+||+-+.+| +..+.
T Consensus       214 ~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q---------~msiRR~~~P~~~D~~S~R~~V~k~D  284 (609)
T KOG4227|consen  214 SETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQ---------FMSIRRGKCPLYFDFISQRCFVLKSD  284 (609)
T ss_pred             cccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCe---------ehhhhccCCCEEeeeecccceeEecc
Confidence            9999999999875431 11      11122223467889998752         22222222334556655333 22222


Q ss_pred             CCC-------CCEEEEEEcCCCCEEEEEeCCCcEEEEecCCC----e-------------------eEEEEecCC-CEEE
Q 008496          489 GHR-------EPVYSLAFSPTGEYLASGSLDKSMHIWSLKEG----K-------------------IVKTYTGNG-GIFE  537 (563)
Q Consensus       489 ~h~-------~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~----~-------------------~~~~~~~~~-~i~~  537 (563)
                       |.       ..|.+++|--|-. +++||.+=.|+||.+...    .                   .+..+.++- .+.-
T Consensus       285 -~N~~GY~N~~T~KS~~F~~D~~-v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQ  362 (609)
T KOG4227|consen  285 -HNPNGYCNIKTIKSMTFIDDYT-VATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQ  362 (609)
T ss_pred             -CCCCcceeeeeeeeeeeeccee-eeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccc
Confidence             22       2466778876544 999999999999997531    1                   112223333 3467


Q ss_pred             EEEcCCCCEEEEEECCCeEEEE
Q 008496          538 VCWNKEGDKIAACFANHTVCVL  559 (563)
Q Consensus       538 l~w~~~g~~la~~~~~~~v~v~  559 (563)
                      +.|+|-...|+.++.-..+.+|
T Consensus       363 VRF~~H~~~l~SSGVE~~~KlW  384 (609)
T KOG4227|consen  363 VRFSQHNNLLVSSGVENSFKLW  384 (609)
T ss_pred             eeecCCcceEeccchhhheecc
Confidence            9999999999888777788887

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.63  E-value=1.4e-14  Score=132.05  Aligned_cols=185  Identities=21%  Similarity=0.392  Sum_probs=142.0

Q ss_pred             ceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECC--CCCEEEEEeCCCcEEEEeCCCCceee--eecccC-CCE
Q 008496          369 VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDP--TGSLLASCSDDVTAKIWNMKQDKYVH--DLREHS-KEI  443 (563)
Q Consensus       369 ~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~--~~~~las~s~dg~i~iwd~~~~~~~~--~~~~~~-~~i  443 (563)
                      ..++++-..|.|++|+..+.+.+..|+++...++.++|..  ....+.+|+.||+||+||++......  ....+. .+.
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f  120 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF  120 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence            3467778899999999999999999999999999999976  45678999999999999998765433  333444 233


Q ss_pred             EEEEEccCCCCCCCCCCcEEEEEEe----CCCeEEEEeCCCCeE-EEEe-cCCCCCEEEEEEcCCC-CEEEEEeCCCcEE
Q 008496          444 YTIRWSPTGSGTNNPNQQLILASAS----FDSTVKLWDVELGKL-LYSL-NGHREPVYSLAFSPTG-EYLASGSLDKSMH  516 (563)
Q Consensus       444 ~~~~~~p~~~~~~~~~~~~~l~s~s----~dg~i~iwd~~~~~~-~~~~-~~h~~~i~~l~~spdg-~~lasgs~dg~v~  516 (563)
                      .++.-...+         .++++|.    .|-.|.+||++..+. +..+ ..|...|+++.|+|.. .+|+|||.||.|.
T Consensus       121 ~~ld~nck~---------~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvn  191 (376)
T KOG1188|consen  121 ICLDLNCKK---------NIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVN  191 (376)
T ss_pred             eEeeccCcC---------CeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEE
Confidence            444332221         2566654    367899999998766 4444 5689999999999965 7899999999999


Q ss_pred             EEecCCC----eeEEEEecCCCEEEEEEcCCC-CEEEEEECCCeEEEEEee
Q 008496          517 IWSLKEG----KIVKTYTGNGGIFEVCWNKEG-DKIAACFANHTVCVLDFR  562 (563)
Q Consensus       517 iw~~~~~----~~~~~~~~~~~i~~l~w~~~g-~~la~~~~~~~v~v~~~~  562 (563)
                      +||++.-    .++.++.....|-.+.|..++ ++|.+-+..++.++|++.
T Consensus       192 lfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele  242 (376)
T KOG1188|consen  192 LFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELE  242 (376)
T ss_pred             eeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEcc
Confidence            9999643    255566666678999999988 566666788899999874

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.63  E-value=2.8e-15  Score=144.27  Aligned_cols=208  Identities=24%  Similarity=0.392  Sum_probs=153.4

Q ss_pred             eeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcC
Q 008496          307 LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIG  386 (563)
Q Consensus       307 ~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~  386 (563)
                      +...+.+|++-|.+|.|+.+|.+|++||.|-.+.|||.-..+....                                  
T Consensus        42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~Kllhs----------------------------------   87 (758)
T KOG1310|consen   42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHS----------------------------------   87 (758)
T ss_pred             hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeee----------------------------------
Confidence            3456889999999999999999999999999999999764433221                                  


Q ss_pred             CCcceeeecCCCcceeEEEECC--CCCEEEEEeCCCcEEEEeCCCC----------ceeeeecccCCCEEEEEEccCCCC
Q 008496          387 ENRPIKTFAGHQGEVNCVKWDP--TGSLLASCSDDVTAKIWNMKQD----------KYVHDLREHSKEIYTIRWSPTGSG  454 (563)
Q Consensus       387 ~~~~~~~~~~h~~~i~~~~~~~--~~~~las~s~dg~i~iwd~~~~----------~~~~~~~~~~~~i~~~~~~p~~~~  454 (563)
                            .-.||..-|-|+.|-|  +.++++||..|..|+++|+...          ...+.+.-|...|..|+-.|.+. 
T Consensus        88 ------I~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~P-  160 (758)
T KOG1310|consen   88 ------ISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGP-  160 (758)
T ss_pred             ------eecccccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCC-
Confidence                  1247888899999988  4578999999999999998742          22334456777777787777654 


Q ss_pred             CCCCCCcEEEEEEeCCCeEEEEeCCCCe-EEE---------EecCCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEecCC-
Q 008496          455 TNNPNQQLILASASFDSTVKLWDVELGK-LLY---------SLNGHREPVYSLAFSPTG-EYLASGSLDKSMHIWSLKE-  522 (563)
Q Consensus       455 ~~~~~~~~~l~s~s~dg~i~iwd~~~~~-~~~---------~~~~h~~~i~~l~~spdg-~~lasgs~dg~v~iw~~~~-  522 (563)
                             ..+-+++.||+|+-+|++... |..         .+....-...++..||.. .+||+|+.|-.+++||.+. 
T Consensus       161 -------htfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~  233 (758)
T KOG1310|consen  161 -------HTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRV  233 (758)
T ss_pred             -------ceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhh
Confidence                   378899999999999998521 111         111222346789999976 6789999999999999532 


Q ss_pred             -------Ce----------eEEEEecC-------------CCEEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496          523 -------GK----------IVKTYTGN-------------GGIFEVCWNKEGDKIAACFANHTVCVLDFR  562 (563)
Q Consensus       523 -------~~----------~~~~~~~~-------------~~i~~l~w~~~g~~la~~~~~~~v~v~~~~  562 (563)
                             |+          ++.-|...             .+++-++|+|.|..|.+..+...|.++|+.
T Consensus       234 lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn  303 (758)
T KOG1310|consen  234 LKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVN  303 (758)
T ss_pred             ccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeec
Confidence                   11          12222110             124678999999999999888889988873

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.62  E-value=1.3e-13  Score=141.25  Aligned_cols=213  Identities=17%  Similarity=0.185  Sum_probs=143.0

Q ss_pred             CeEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEEEeeCC---CcEEEEECCCCceeEEeeecccCeEEEecCCCceEE
Q 008496          296 GQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCD---KTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFA  372 (563)
Q Consensus       296 g~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D---~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  372 (563)
                      ..|.+||.++.....+..+...+.+.+|+|+|++|+.++.+   ..|.+||+.+++...                     
T Consensus       184 ~~l~i~D~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~---------------------  242 (433)
T PRK04922        184 YALQVADSDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL---------------------  242 (433)
T ss_pred             EEEEEECCCCCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE---------------------
Confidence            36889998887666777788899999999999999887643   357888876654211                     


Q ss_pred             EEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEE-EEeCCC--cEEEEeCCCCceeeeecccCCCEEEEEEc
Q 008496          373 TSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLA-SCSDDV--TAKIWNMKQDKYVHDLREHSKEIYTIRWS  449 (563)
Q Consensus       373 ~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~la-s~s~dg--~i~iwd~~~~~~~~~~~~~~~~i~~~~~~  449 (563)
                                           +..+.+...+++|+|||+.|+ +.+.+|  .|.+||+.++.. ..+..+........|+
T Consensus       243 ---------------------l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~s  300 (433)
T PRK04922        243 ---------------------VASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTWA  300 (433)
T ss_pred             ---------------------eccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCe-EECccCCCCccceEEC
Confidence                                 111122334689999998765 555555  589999987764 3455555556778999


Q ss_pred             cCCCCCCCCCCcEEEEEEeCCCe--EEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCC---cEEEEecCCCe
Q 008496          450 PTGSGTNNPNQQLILASASFDST--VKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDK---SMHIWSLKEGK  524 (563)
Q Consensus       450 p~~~~~~~~~~~~~l~s~s~dg~--i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg---~v~iw~~~~~~  524 (563)
                      |+|.        .++.+...+|.  |.++|+..++.. .+..+......++|||||++|+..+.++   .|.+|++.+++
T Consensus       301 pDG~--------~l~f~sd~~g~~~iy~~dl~~g~~~-~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~  371 (433)
T PRK04922        301 PDGK--------SIYFTSDRGGRPQIYRVAASGGSAE-RLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGS  371 (433)
T ss_pred             CCCC--------EEEEEECCCCCceEEEEECCCCCeE-EeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCC
Confidence            9885        23334334554  666677666542 2222333445789999999998765443   69999998887


Q ss_pred             eEEEEecCCCEEEEEEcCCCCEEEEEECC---CeEEEEEe
Q 008496          525 IVKTYTGNGGIFEVCWNKEGDKIAACFAN---HTVCVLDF  561 (563)
Q Consensus       525 ~~~~~~~~~~i~~l~w~~~g~~la~~~~~---~~v~v~~~  561 (563)
                      .. .+........++|+|||+.|++...+   ..+.+++.
T Consensus       372 ~~-~Lt~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~  410 (433)
T PRK04922        372 VR-TLTPGSLDESPSFAPNGSMVLYATREGGRGVLAAVST  410 (433)
T ss_pred             eE-ECCCCCCCCCceECCCCCEEEEEEecCCceEEEEEEC
Confidence            54 33333344568999999998877553   24555554

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.62  E-value=9.6e-14  Score=141.82  Aligned_cols=206  Identities=20%  Similarity=0.224  Sum_probs=137.6

Q ss_pred             CeEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEEEeeCC---CcEEEEECCCCceeEEeeecccCeEEEecCCCceEE
Q 008496          296 GQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCD---KTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFA  372 (563)
Q Consensus       296 g~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D---~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  372 (563)
                      ..|.+||.+|.....+..+...+.+.+|+|+|+.|+..+.+   ..|.+||+.+++...                     
T Consensus       176 ~~L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~---------------------  234 (427)
T PRK02889        176 YQLQISDADGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV---------------------  234 (427)
T ss_pred             cEEEEECCCCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE---------------------
Confidence            46777788777666677788899999999999998876643   348888887664221                     


Q ss_pred             EEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEE-EEeCCCcEEEEeC--CCCceeeeecccCCCEEEEEEc
Q 008496          373 TSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLA-SCSDDVTAKIWNM--KQDKYVHDLREHSKEIYTIRWS  449 (563)
Q Consensus       373 ~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~la-s~s~dg~i~iwd~--~~~~~~~~~~~~~~~i~~~~~~  449 (563)
                                           +....+.+.+.+|+|||+.|+ +.+.++...||.+  .++. ...+..+........|+
T Consensus       235 ---------------------l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wS  292 (427)
T PRK02889        235 ---------------------VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFS  292 (427)
T ss_pred             ---------------------eecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEc
Confidence                                 111122345789999998876 5677888777754  3333 44455555556778899


Q ss_pred             cCCCCCCCCCCcEEEEEEeCCCeEEEEeC--CCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCC---cEEEEecCCCe
Q 008496          450 PTGSGTNNPNQQLILASASFDSTVKLWDV--ELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDK---SMHIWSLKEGK  524 (563)
Q Consensus       450 p~~~~~~~~~~~~~l~s~s~dg~i~iwd~--~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg---~v~iw~~~~~~  524 (563)
                      |+|.        .++.++..+|...||.+  ..++. ..+..+.......+|||||++|+..+.++   .|.+||+.+++
T Consensus       293 pDG~--------~l~f~s~~~g~~~Iy~~~~~~g~~-~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~  363 (427)
T PRK02889        293 PDGR--------SIYFTSDRGGAPQIYRMPASGGAA-QRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQ  363 (427)
T ss_pred             CCCC--------EEEEEecCCCCcEEEEEECCCCce-EEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCC
Confidence            9886        23444444566666654  44432 22222223345678999999999777654   69999998887


Q ss_pred             eEEEEecCCCEEEEEEcCCCCEEEEEECCC
Q 008496          525 IVKTYTGNGGIFEVCWNKEGDKIAACFANH  554 (563)
Q Consensus       525 ~~~~~~~~~~i~~l~w~~~g~~la~~~~~~  554 (563)
                      .... ........++|+|||+.|+++..++
T Consensus       364 ~~~l-t~~~~~~~p~~spdg~~l~~~~~~~  392 (427)
T PRK02889        364 VTAL-TDTTRDESPSFAPNGRYILYATQQG  392 (427)
T ss_pred             eEEc-cCCCCccCceECCCCCEEEEEEecC
Confidence            5433 3333446789999999998876543

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.62  E-value=5.1e-13  Score=136.35  Aligned_cols=215  Identities=14%  Similarity=0.189  Sum_probs=140.0

Q ss_pred             CCeEEEEECCCCCEEEEEeC---CCeEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEEEe-eCCC--cEEEEECCCCc
Q 008496          275 KDVTTLDWNGEGTLLATGSY---DGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTG-SCDK--TAIVWDVKTEE  348 (563)
Q Consensus       275 ~~V~~l~~s~~g~~l~sg~~---dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~-s~D~--~v~iwd~~~~~  348 (563)
                      ..+.+.+|||||+.|+..+.   +..+.+|+..+.....+....+.+..+.|+|+|+.|+.. +.++  .|.+||+.++.
T Consensus       199 ~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~  278 (429)
T PRK03629        199 QPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ  278 (429)
T ss_pred             CceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCC
Confidence            46889999999999987653   357889998765444444444445678999999988754 3344  46667766543


Q ss_pred             eeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCC-CcEEEE--
Q 008496          349 WKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDD-VTAKIW--  425 (563)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~d-g~i~iw--  425 (563)
                      ..+                                          +..+...+....|+|||+.|+..+++ +...||  
T Consensus       279 ~~~------------------------------------------lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~  316 (429)
T PRK03629        279 IRQ------------------------------------------VTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKV  316 (429)
T ss_pred             EEE------------------------------------------ccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEE
Confidence            221                                          11122345678999999988877764 455555  


Q ss_pred             eCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCC--CeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCC
Q 008496          426 NMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFD--STVKLWDVELGKLLYSLNGHREPVYSLAFSPTG  503 (563)
Q Consensus       426 d~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~d--g~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg  503 (563)
                      |+.++.. ..+..+........|+|+|.        .+++++..+  ..|.+||+.+++.. .+... .......|||||
T Consensus       317 d~~~g~~-~~lt~~~~~~~~~~~SpDG~--------~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~-~~~~~p~~SpDG  385 (429)
T PRK03629        317 NINGGAP-QRITWEGSQNQDADVSSDGK--------FMVMVSSNGGQQHIAKQDLATGGVQ-VLTDT-FLDETPSIAPNG  385 (429)
T ss_pred             ECCCCCe-EEeecCCCCccCEEECCCCC--------EEEEEEccCCCceEEEEECCCCCeE-EeCCC-CCCCCceECCCC
Confidence            5555543 33433444556788999885        233333333  35888999887643 33321 224567899999


Q ss_pred             CEEEEEeCCCc---EEEEecCCCeeEEEEec-CCCEEEEEEcCC
Q 008496          504 EYLASGSLDKS---MHIWSLKEGKIVKTYTG-NGGIFEVCWNKE  543 (563)
Q Consensus       504 ~~lasgs~dg~---v~iw~~~~~~~~~~~~~-~~~i~~l~w~~~  543 (563)
                      ++|+.++.++.   +.++++ +|+....+.. .+.+.+.+|+|-
T Consensus       386 ~~i~~~s~~~~~~~l~~~~~-~G~~~~~l~~~~~~~~~p~Wsp~  428 (429)
T PRK03629        386 TMVIYSSSQGMGSVLNLVST-DGRFKARLPATDGQVKFPAWSPY  428 (429)
T ss_pred             CEEEEEEcCCCceEEEEEEC-CCCCeEECccCCCCcCCcccCCC
Confidence            99999887764   677777 4555555544 456788999973

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.62  E-value=5.6e-13  Score=136.08  Aligned_cols=207  Identities=13%  Similarity=0.174  Sum_probs=138.8

Q ss_pred             CeEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEEEeeC---CCcEEEEECCCCceeEEeeecccCeEEEecCCCceEE
Q 008496          296 GQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSC---DKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFA  372 (563)
Q Consensus       296 g~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~---D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  372 (563)
                      ..|.+||.+|.....+..+...+.+.+|+|+|+.|+..+.   +..+.+||+.+++...                     
T Consensus       179 ~~l~~~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~---------------------  237 (429)
T PRK03629        179 YELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ---------------------  237 (429)
T ss_pred             eeEEEEcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE---------------------
Confidence            3788999888766666677789999999999999886542   3457777776553211                     


Q ss_pred             EEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEE-eCCC--cEEEEeCCCCceeeeecccCCCEEEEEEc
Q 008496          373 TSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASC-SDDV--TAKIWNMKQDKYVHDLREHSKEIYTIRWS  449 (563)
Q Consensus       373 ~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~-s~dg--~i~iwd~~~~~~~~~~~~~~~~i~~~~~~  449 (563)
                                        +..+.++   +..++|+|||+.|+.. +.+|  .|.+||+.++... .+..+...+....|+
T Consensus       238 ------------------l~~~~~~---~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~-~lt~~~~~~~~~~wS  295 (429)
T PRK03629        238 ------------------VASFPRH---NGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR-QVTDGRSNNTEPTWF  295 (429)
T ss_pred             ------------------ccCCCCC---cCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEE-EccCCCCCcCceEEC
Confidence                              1112222   3357899999988754 4455  4888999887654 344444567889999


Q ss_pred             cCCCCCCCCCCcEEEEEEeCCCeEEEE--eCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCC---CcEEEEecCCCe
Q 008496          450 PTGSGTNNPNQQLILASASFDSTVKLW--DVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLD---KSMHIWSLKEGK  524 (563)
Q Consensus       450 p~~~~~~~~~~~~~l~s~s~dg~i~iw--d~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~d---g~v~iw~~~~~~  524 (563)
                      |+|.        .++.+...++...||  |+..+.. ..+..+...+...+|||||++|+..+.+   ..|.+||+.+++
T Consensus       296 PDG~--------~I~f~s~~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~  366 (429)
T PRK03629        296 PDSQ--------NLAYTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG  366 (429)
T ss_pred             CCCC--------EEEEEeCCCCCceEEEEECCCCCe-EEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCC
Confidence            9985        233333334444444  6665543 3333344456678999999999876543   358899998886


Q ss_pred             eEEEEecCCCEEEEEEcCCCCEEEEEECCCe
Q 008496          525 IVKTYTGNGGIFEVCWNKEGDKIAACFANHT  555 (563)
Q Consensus       525 ~~~~~~~~~~i~~l~w~~~g~~la~~~~~~~  555 (563)
                      .. .+.........+|+|||+.|++++.++.
T Consensus       367 ~~-~Lt~~~~~~~p~~SpDG~~i~~~s~~~~  396 (429)
T PRK03629        367 VQ-VLTDTFLDETPSIAPNGTMVIYSSSQGM  396 (429)
T ss_pred             eE-EeCCCCCCCCceECCCCCEEEEEEcCCC
Confidence            43 3333223456899999999999887764

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.61  E-value=2.4e-13  Score=142.68  Aligned_cols=263  Identities=19%  Similarity=0.287  Sum_probs=170.6

Q ss_pred             CceeEecCCCCceEEEEECCC-CCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECC
Q 008496          206 SDVTILEGHTSEVCACAWSPA-GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG  284 (563)
Q Consensus       206 ~~~~~l~~h~~~V~~~~~sp~-~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~  284 (563)
                      ..+..|..|...|..++.++. +.+++|||.||+||+|++..-....    +......      ........+.++..-+
T Consensus      1039 ~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~----~s~rS~l------tys~~~sr~~~vt~~~ 1108 (1431)
T KOG1240|consen 1039 ILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEG----GSARSEL------TYSPEGSRVEKVTMCG 1108 (1431)
T ss_pred             eEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCc----ceeeeeE------EEeccCCceEEEEecc
Confidence            346778889999988888876 5999999999999999976422110    0000000      1112356788999999


Q ss_pred             CCCEEEEEeCCCeEEEEEcCCc--eeE------eeccC-CCCEEEEE-eCC-CC-CEEEEeeCCCcEEEEECCCCceeEE
Q 008496          285 EGTLLATGSYDGQARIWSTNGD--LKC------TLSKH-KGPIFSLK-WNK-KG-DYLLTGSCDKTAIVWDVKTEEWKQQ  352 (563)
Q Consensus       285 ~g~~l~sg~~dg~i~vw~~~~~--~~~------~~~~h-~~~V~~l~-~~~-~~-~~l~s~s~D~~v~iwd~~~~~~~~~  352 (563)
                      .|..+|.|+.||.|++.+.+-.  ...      ....+ .+.+.++. |.. .+ ..++.+..-+.+..||+++....  
T Consensus      1109 ~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~-- 1186 (1431)
T KOG1240|consen 1109 NGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDA-- 1186 (1431)
T ss_pred             CCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhH--
Confidence            9999999999999999987641  110      11111 23333332 221 11 24555556666777776543211  


Q ss_pred             eeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCce
Q 008496          353 FEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKY  432 (563)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~  432 (563)
                                                    |.+       ...-..|.|++++.+|.+.++++|+..|.+-+||++-+.+
T Consensus      1187 ------------------------------w~l-------k~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~ 1229 (1431)
T KOG1240|consen 1187 ------------------------------WRL-------KNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVP 1229 (1431)
T ss_pred             ------------------------------Hhh-------hcCccccceeEEEecCCceEEEEecCCceEEEEEeecCce
Confidence                                          111       1122356799999999999999999999999999998877


Q ss_pred             eeeec-ccCCCEEEEEEccCCCCCCCCCCcEEEEEEe-CCCeEEEEeCCCCeEEEEecCC--------CCC---------
Q 008496          433 VHDLR-EHSKEIYTIRWSPTGSGTNNPNQQLILASAS-FDSTVKLWDVELGKLLYSLNGH--------REP---------  493 (563)
Q Consensus       433 ~~~~~-~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~h--------~~~---------  493 (563)
                      +.... .+..+|..+..+|....     ....+.+++ ..+.|.+|++.+|.+.+.+-..        ..|         
T Consensus      1230 i~sw~~P~~~~i~~v~~~~~~~~-----~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~ 1304 (1431)
T KOG1240|consen 1230 ILSWEHPARAPIRHVWLCPTYPQ-----ESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDS 1304 (1431)
T ss_pred             eecccCcccCCcceEEeeccCCC-----CceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCc
Confidence            76554 34467888877775431     122444555 6889999999998776655322        111         


Q ss_pred             --EEEEEEcCCCCEEEEEeCCCcEEEEecCC
Q 008496          494 --VYSLAFSPTGEYLASGSLDKSMHIWSLKE  522 (563)
Q Consensus       494 --i~~l~~spdg~~lasgs~dg~v~iw~~~~  522 (563)
                        ....++..-+.++.+|+.|..|+.||...
T Consensus      1305 ~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~ 1335 (1431)
T KOG1240|consen 1305 LAGISCGVCEKNGFLLTGGSDMKIRKWDPTR 1335 (1431)
T ss_pred             ccceeeecccCCceeeecCCccceeeccCCC
Confidence              11223333346888999999999999764

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.61  E-value=8.3e-15  Score=139.37  Aligned_cols=281  Identities=22%  Similarity=0.341  Sum_probs=209.3

Q ss_pred             ccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcC-Cce-eEeeccCCCCEEEEEeCCCC--CEEEEeeCCCcEEEEECC-
Q 008496          271 NEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTN-GDL-KCTLSKHKGPIFSLKWNKKG--DYLLTGSCDKTAIVWDVK-  345 (563)
Q Consensus       271 ~~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~-~~~-~~~~~~h~~~V~~l~~~~~~--~~l~s~s~D~~v~iwd~~-  345 (563)
                      ..|.+.|..+.|+..|..|++|+.|..|.+|+.. +.. .....+|...|...+|-|..  ..+++++.||.|++=.+. 
T Consensus       139 ~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~  218 (559)
T KOG1334|consen  139 NKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILE  218 (559)
T ss_pred             cCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeecc
Confidence            4567889999999999999999999999999964 333 33457899999999998854  568999999999987653 


Q ss_pred             CCcee--EEeeecccCeEEEec--CCCceEEEEeCCCeEEEEEcCCCcceeeec---CCCc---ceeEEEECCCCC-EEE
Q 008496          346 TEEWK--QQFEFHSGPTLDVDW--RNNVSFATSSTDNMIYVCKIGENRPIKTFA---GHQG---EVNCVKWDPTGS-LLA  414 (563)
Q Consensus       346 ~~~~~--~~~~~~~~~~~~~~~--~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~---~h~~---~i~~~~~~~~~~-~la  414 (563)
                      ++.+.  ..+..|.+++..+..  .....|.+++.|+.+.-+|++...|...+.   .+..   ....++.+|... .+|
T Consensus       219 t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~fa  298 (559)
T KOG1334|consen  219 TGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFA  298 (559)
T ss_pred             ccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccc
Confidence            33332  234456677655543  455789999999999999998887655443   2333   457888999765 789


Q ss_pred             EEeCCCcEEEEeCCCCc------eeeeecc------cCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC--
Q 008496          415 SCSDDVTAKIWNMKQDK------YVHDLRE------HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL--  480 (563)
Q Consensus       415 s~s~dg~i~iwd~~~~~------~~~~~~~------~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~--  480 (563)
                      +|+.|-.+|+||.+.-.      .+..+..      ..-.|++++|+.++.         -|+++..|-.|+++.-.-  
T Consensus       299 VgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~s---------ElLaSYnDe~IYLF~~~~~~  369 (559)
T KOG1334|consen  299 VGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGS---------ELLASYNDEDIYLFNKSMGD  369 (559)
T ss_pred             cCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCcc---------ceeeeecccceEEecccccc
Confidence            99999999999975321      1222222      234589999987664         244555677899985332  


Q ss_pred             C----------eEE-EEecCCCC--CEEEEEE-cCCCCEEEEEeCCCcEEEEecCCCeeEEEEecC-CCEEEEEEcCCCC
Q 008496          481 G----------KLL-YSLNGHRE--PVYSLAF-SPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGN-GGIFEVCWNKEGD  545 (563)
Q Consensus       481 ~----------~~~-~~~~~h~~--~i~~l~~-spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~~-~~i~~l~w~~~g~  545 (563)
                      |          ..+ ..++||..  .|..+-| -|...|+++||.-|.|.||+-.++++++.+.+. ..|.+|.=+|---
T Consensus       370 G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~P  449 (559)
T KOG1334|consen  370 GSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLP  449 (559)
T ss_pred             CCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCc
Confidence            2          122 23678864  3666654 789999999999999999999999988877663 4678899899889


Q ss_pred             EEEEEECCCeEEEEE
Q 008496          546 KIAACFANHTVCVLD  560 (563)
Q Consensus       546 ~la~~~~~~~v~v~~  560 (563)
                      .||+++-+..|.||-
T Consensus       450 vLAsSGid~DVKIWT  464 (559)
T KOG1334|consen  450 VLASSGIDHDVKIWT  464 (559)
T ss_pred             hhhccCCccceeeec
Confidence            999999999999994

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.61  E-value=6e-13  Score=136.66  Aligned_cols=215  Identities=13%  Similarity=0.136  Sum_probs=144.4

Q ss_pred             CCCeEEEEECCCCCEEEEEeC---CCeEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEE-EeeCCCc--EEEEECCCC
Q 008496          274 SKDVTTLDWNGEGTLLATGSY---DGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLL-TGSCDKT--AIVWDVKTE  347 (563)
Q Consensus       274 ~~~V~~l~~s~~g~~l~sg~~---dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~-s~s~D~~--v~iwd~~~~  347 (563)
                      ...+.+.+|+|||+.|+..+.   +..|.+|+..+.....+..+.+.+...+|+|+|+.|+ +.+.++.  |.+||+.++
T Consensus       201 ~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~  280 (435)
T PRK05137        201 SSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSG  280 (435)
T ss_pred             CCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCC
Confidence            456899999999999988764   3689999987766666667778888999999999875 5555554  555565544


Q ss_pred             ceeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeC-CC--cEEE
Q 008496          348 EWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD-DV--TAKI  424 (563)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~-dg--~i~i  424 (563)
                      ..                                          ..+..+.+......|+|||+.|+..++ +|  .|.+
T Consensus       281 ~~------------------------------------------~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~  318 (435)
T PRK05137        281 TT------------------------------------------TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYV  318 (435)
T ss_pred             ce------------------------------------------EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEE
Confidence            32                                          112223344556899999998887764 33  5777


Q ss_pred             EeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCC---CeEEEEeCCCCeEEEEecCCCCCEEEEEEcC
Q 008496          425 WNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFD---STVKLWDVELGKLLYSLNGHREPVYSLAFSP  501 (563)
Q Consensus       425 wd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~d---g~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp  501 (563)
                      ||+.++.. ..+..+...+....|+|+|.         .|+..+.+   ..|.+||+..+.. ..+. ....+..++|+|
T Consensus       319 ~d~~g~~~-~~lt~~~~~~~~~~~SpdG~---------~ia~~~~~~~~~~i~~~d~~~~~~-~~lt-~~~~~~~p~~sp  386 (435)
T PRK05137        319 MNADGSNP-RRISFGGGRYSTPVWSPRGD---------LIAFTKQGGGQFSIGVMKPDGSGE-RILT-SGFLVEGPTWAP  386 (435)
T ss_pred             EECCCCCe-EEeecCCCcccCeEECCCCC---------EEEEEEcCCCceEEEEEECCCCce-Eecc-CCCCCCCCeECC
Confidence            78766543 33433445566788999885         34443332   3688888765443 3333 223467889999


Q ss_pred             CCCEEEEEeCC------CcEEEEecCCCeeEEEEecCCCEEEEEEcCC
Q 008496          502 TGEYLASGSLD------KSMHIWSLKEGKIVKTYTGNGGIFEVCWNKE  543 (563)
Q Consensus       502 dg~~lasgs~d------g~v~iw~~~~~~~~~~~~~~~~i~~l~w~~~  543 (563)
                      ||++|+..+.+      ..|.++++..+.. ..+...+.+...+|+|-
T Consensus       387 DG~~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~~~~~~~~p~Wsp~  433 (435)
T PRK05137        387 NGRVIMFFRQTPGSGGAPKLYTVDLTGRNE-REVPTPGDASDPAWSPL  433 (435)
T ss_pred             CCCEEEEEEccCCCCCcceEEEEECCCCce-EEccCCCCccCcccCCC
Confidence            99998765543      2578888866554 44444555778899873

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.60  E-value=4.2e-13  Score=137.59  Aligned_cols=213  Identities=17%  Similarity=0.213  Sum_probs=140.0

Q ss_pred             CCeEEEEECCCCCEEEEEeCC---CeEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEE-EeeCCC--cEEEEECCCCc
Q 008496          275 KDVTTLDWNGEGTLLATGSYD---GQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLL-TGSCDK--TAIVWDVKTEE  348 (563)
Q Consensus       275 ~~V~~l~~s~~g~~l~sg~~d---g~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~-s~s~D~--~v~iwd~~~~~  348 (563)
                      ..+.+.+|+|||+.|+..+.+   ..|++|+..+.....+..+.+...+.+|+|+|+.|+ +.+.++  .|.+||+.++.
T Consensus       204 ~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~  283 (433)
T PRK04922        204 EPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQ  283 (433)
T ss_pred             CccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCC
Confidence            458889999999999988754   469999987665555555566666889999999875 445554  46777766543


Q ss_pred             eeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeC-CCc--EEEE
Q 008496          349 WKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD-DVT--AKIW  425 (563)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~-dg~--i~iw  425 (563)
                      ..                                          .+..+......++|+|||+.|+.+++ +|.  |.++
T Consensus       284 ~~------------------------------------------~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~  321 (433)
T PRK04922        284 LT------------------------------------------RLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRV  321 (433)
T ss_pred             eE------------------------------------------ECccCCCCccceEECCCCCEEEEEECCCCCceEEEE
Confidence            21                                          12223333456899999998887765 455  5556


Q ss_pred             eCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEe-CCC--eEEEEeCCCCeEEEEecCCCCCEEEEEEcCC
Q 008496          426 NMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASAS-FDS--TVKLWDVELGKLLYSLNGHREPVYSLAFSPT  502 (563)
Q Consensus       426 d~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s-~dg--~i~iwd~~~~~~~~~~~~h~~~i~~l~~spd  502 (563)
                      ++.++... .+..+.......+|+|+|.         .|+..+ .++  .|.+||+.+++.. .+. +........|+||
T Consensus       322 dl~~g~~~-~lt~~g~~~~~~~~SpDG~---------~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spd  389 (433)
T PRK04922        322 AASGGSAE-RLTFQGNYNARASVSPDGK---------KIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPN  389 (433)
T ss_pred             ECCCCCeE-EeecCCCCccCEEECCCCC---------EEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCC
Confidence            66665432 2322333455789999885         343333 222  6999999877654 443 2224556799999


Q ss_pred             CCEEEEEeCC---CcEEEEecCCCeeEEEEe-cCCCEEEEEEcC
Q 008496          503 GEYLASGSLD---KSMHIWSLKEGKIVKTYT-GNGGIFEVCWNK  542 (563)
Q Consensus       503 g~~lasgs~d---g~v~iw~~~~~~~~~~~~-~~~~i~~l~w~~  542 (563)
                      |++|+..+.+   +.|.++++.. .....+. ..+.+..++|+|
T Consensus       390 G~~i~~~s~~~g~~~L~~~~~~g-~~~~~l~~~~g~~~~p~wsp  432 (433)
T PRK04922        390 GSMVLYATREGGRGVLAAVSTDG-RVRQRLVSADGEVREPAWSP  432 (433)
T ss_pred             CCEEEEEEecCCceEEEEEECCC-CceEEcccCCCCCCCCccCC
Confidence            9998876653   4688888854 4444443 345677889987

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.60  E-value=7.3e-14  Score=127.48  Aligned_cols=269  Identities=21%  Similarity=0.434  Sum_probs=176.6

Q ss_pred             CCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCc------eeEeeccCC------------CCEEEEEeCCCCC--EEEEe
Q 008496          274 SKDVTTLDWNGEGTLLATGSYDGQARIWSTNGD------LKCTLSKHK------------GPIFSLKWNKKGD--YLLTG  333 (563)
Q Consensus       274 ~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~------~~~~~~~h~------------~~V~~l~~~~~~~--~l~s~  333 (563)
                      ..-|.++.|...|.+|++|..+|.|-++..+..      ....++.|.            .+|..++|.++++  .++..
T Consensus        25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls  104 (433)
T KOG1354|consen   25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS  104 (433)
T ss_pred             hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence            345889999999999999999999999975432      233455554            3688899998764  57777


Q ss_pred             eCCCcEEEEECCCCceeE-Eeeec-ccCeEEEecCCCceE-EEEeCCCeEEEEEcCCCcceeee-cCCCcceeEEEECCC
Q 008496          334 SCDKTAIVWDVKTEEWKQ-QFEFH-SGPTLDVDWRNNVSF-ATSSTDNMIYVCKIGENRPIKTF-AGHQGEVNCVKWDPT  409 (563)
Q Consensus       334 s~D~~v~iwd~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~-~~~~~d~~i~~~~~~~~~~~~~~-~~h~~~i~~~~~~~~  409 (563)
                      ..|++|++|-+....... .+... ..+...+   ...++ +....+-.+      ...|.+.+ .+|.-.|+++.++.|
T Consensus       105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~---~~lr~p~~~~~~~~v------ea~prRv~aNaHtyhiNSIS~NsD  175 (433)
T KOG1354|consen  105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTI---TSLRLPVEGRHDLEV------EASPRRVYANAHTYHINSISVNSD  175 (433)
T ss_pred             cCCcceeeeeeeccccccccccccccCCCCcc---ceeeceeecccccee------eeeeeeeccccceeEeeeeeecCc
Confidence            889999999876433221 00000 0000000   00000 001111111      11234444 368888999999999


Q ss_pred             CCEEEEEeCCCcEEEEeCCCCc---eeeeeccc-----CCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC
Q 008496          410 GSLLASCSDDVTAKIWNMKQDK---YVHDLREH-----SKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG  481 (563)
Q Consensus       410 ~~~las~s~dg~i~iwd~~~~~---~~~~~~~~-----~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~  481 (563)
                      +..++++ +|=.|.+|++.-..   .+..++.+     +.-|++..|+|...        .+++-.|.-|+|||-|++..
T Consensus       176 ~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~c--------n~f~YSSSKGtIrLcDmR~~  246 (433)
T KOG1354|consen  176 KETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHC--------NVFVYSSSKGTIRLCDMRQS  246 (433)
T ss_pred             cceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHc--------cEEEEecCCCcEEEeechhh
Confidence            9988765 67789999975322   12233332     34567777777543        47788888999999999843


Q ss_pred             eE------EEEec----------CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEec-CCCeeEEEEec-------------
Q 008496          482 KL------LYSLN----------GHREPVYSLAFSPTGEYLASGSLDKSMHIWSL-KEGKIVKTYTG-------------  531 (563)
Q Consensus       482 ~~------~~~~~----------~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~-~~~~~~~~~~~-------------  531 (563)
                      .+      ++...          .--..|..+.||++|+||++-+. -+|++||+ ...+.+.+++.             
T Consensus       247 aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYE  325 (433)
T KOG1354|consen  247 ALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYE  325 (433)
T ss_pred             hhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhh
Confidence            21      11111          11235788999999999998654 47999999 56677777753             


Q ss_pred             CCCE---EEEEEcCCCCEEEEEECCCeEEEEEe
Q 008496          532 NGGI---FEVCWNKEGDKIAACFANHTVCVLDF  561 (563)
Q Consensus       532 ~~~i---~~l~w~~~g~~la~~~~~~~v~v~~~  561 (563)
                      +..|   +.++|+.++.++++|+-+....|++.
T Consensus       326 nD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~  358 (433)
T KOG1354|consen  326 NDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNL  358 (433)
T ss_pred             ccchhheeEEEEcCCcceEecccccceEEEecC
Confidence            2345   46999999999999988888899874

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.60  E-value=6.6e-15  Score=139.24  Aligned_cols=269  Identities=17%  Similarity=0.226  Sum_probs=201.3

Q ss_pred             eEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEEeCCCe
Q 008496          218 VCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQ  297 (563)
Q Consensus       218 V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~dg~  297 (563)
                      -+.+.++.+|++|+.|+.-|.+-.+|+.++....           -..       -...|..+.|-.+.+++|++- ...
T Consensus       132 PY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~-----------Ei~-------v~Etv~Dv~~LHneq~~AVAQ-K~y  192 (545)
T KOG1272|consen  132 PYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHF-----------EIN-------VMETVRDVTFLHNEQFFAVAQ-KKY  192 (545)
T ss_pred             CeeeeecCCccEEEecCCccceeeeecccceeee-----------eee-------hhhhhhhhhhhcchHHHHhhh-hce
Confidence            4568899999999999999999999987643210           000       023477788888888887764 568


Q ss_pred             EEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecCC-CceEEEEeC
Q 008496          298 ARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN-NVSFATSST  376 (563)
Q Consensus       298 i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  376 (563)
                      +.|||-.|.....+..| ..|..+.|-|..-.|++++..|.++--|+.+|+.+..+....+.+..+.-.+ +..+-++..
T Consensus       193 ~yvYD~~GtElHClk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~Ghs  271 (545)
T KOG1272|consen  193 VYVYDNNGTELHCLKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHS  271 (545)
T ss_pred             EEEecCCCcEEeehhhc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCC
Confidence            99999999888777766 4688999999988888999999999999999999888877666655444433 344567889


Q ss_pred             CCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEEEEEccCCCCCC
Q 008496          377 DNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTN  456 (563)
Q Consensus       377 d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~  456 (563)
                      +|+|.+|.-....|+..+-.|.++|++|+++++|.++||.+.|..++|||++....++++.. ..+...+++|..|    
T Consensus       272 nGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sqkg----  346 (545)
T KOG1272|consen  272 NGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKG----  346 (545)
T ss_pred             CceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec-CCCcccccccccc----
Confidence            99999999999899888889999999999999999999999999999999998876666554 2344555665544    


Q ss_pred             CCCCcEEEEEEeCCCeEEEEe-CCC--CeEEEEecCC--CCCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 008496          457 NPNQQLILASASFDSTVKLWD-VEL--GKLLYSLNGH--REPVYSLAFSPTGEYLASGSLDKSMHIW  518 (563)
Q Consensus       457 ~~~~~~~l~s~s~dg~i~iwd-~~~--~~~~~~~~~h--~~~i~~l~~spdg~~lasgs~dg~v~iw  518 (563)
                            +| ++|....|.||. .-.  +..-.....|  .++|..+.|.|-...|-.|-.-|.-.|-
T Consensus       347 ------lL-A~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~tsil  406 (545)
T KOG1272|consen  347 ------LL-ALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGITSIL  406 (545)
T ss_pred             ------ce-eeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCCceeEe
Confidence                  34 455667899994 222  1111111222  3589999999977777776666643343

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.59  E-value=6.1e-13  Score=135.95  Aligned_cols=215  Identities=20%  Similarity=0.286  Sum_probs=139.5

Q ss_pred             CCCeEEEEECCCCCEEEEEeCC---CeEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEE-EeeCCCcEEEEEC--CCC
Q 008496          274 SKDVTTLDWNGEGTLLATGSYD---GQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLL-TGSCDKTAIVWDV--KTE  347 (563)
Q Consensus       274 ~~~V~~l~~s~~g~~l~sg~~d---g~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~-s~s~D~~v~iwd~--~~~  347 (563)
                      ...+.+.+|+|||+.|+..+.+   ..|.+|+..+.....+....+.+.+..|+|+|+.|+ +.+.++...||.+  .++
T Consensus       195 ~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~  274 (427)
T PRK02889        195 PEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGS  274 (427)
T ss_pred             CCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCC
Confidence            3568889999999999887753   359999987655555554556677899999999886 5566776666643  221


Q ss_pred             ceeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeC-CCcEEEEe
Q 008496          348 EWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD-DVTAKIWN  426 (563)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~-dg~i~iwd  426 (563)
                      .                                          ...+..+.+......|+|||+.|+..++ +|...||.
T Consensus       275 ~------------------------------------------~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~  312 (427)
T PRK02889        275 G------------------------------------------LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYR  312 (427)
T ss_pred             C------------------------------------------cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEE
Confidence            1                                          1122223334456789999998876665 56677776


Q ss_pred             C--CCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCC---eEEEEeCCCCeEEEEecCCCCCEEEEEEcC
Q 008496          427 M--KQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDS---TVKLWDVELGKLLYSLNGHREPVYSLAFSP  501 (563)
Q Consensus       427 ~--~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg---~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp  501 (563)
                      +  .++.. ..+...........|+|+|.         .|+..+.++   .|.+||+.+++.. .+... ......+|+|
T Consensus       313 ~~~~~g~~-~~lt~~g~~~~~~~~SpDG~---------~Ia~~s~~~g~~~I~v~d~~~g~~~-~lt~~-~~~~~p~~sp  380 (427)
T PRK02889        313 MPASGGAA-QRVTFTGSYNTSPRISPDGK---------LLAYISRVGGAFKLYVQDLATGQVT-ALTDT-TRDESPSFAP  380 (427)
T ss_pred             EECCCCce-EEEecCCCCcCceEECCCCC---------EEEEEEccCCcEEEEEEECCCCCeE-EccCC-CCccCceECC
Confidence            5  33332 22222233345678999886         455444443   6999999887654 33322 2346789999


Q ss_pred             CCCEEEEEeCCC---cEEEEecCCCeeEEEEec-CCCEEEEEEcCC
Q 008496          502 TGEYLASGSLDK---SMHIWSLKEGKIVKTYTG-NGGIFEVCWNKE  543 (563)
Q Consensus       502 dg~~lasgs~dg---~v~iw~~~~~~~~~~~~~-~~~i~~l~w~~~  543 (563)
                      ||++|+.++.++   .+.+.++ +|+..+.+.. .+.+...+|+|-
T Consensus       381 dg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~g~~~~p~wsp~  425 (427)
T PRK02889        381 NGRYILYATQQGGRSVLAAVSS-DGRIKQRLSVQGGDVREPSWGPF  425 (427)
T ss_pred             CCCEEEEEEecCCCEEEEEEEC-CCCceEEeecCCCCCCCCccCCC
Confidence            999998776543   3555555 4555555543 355778899874

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.58  E-value=4.8e-13  Score=120.37  Aligned_cols=118  Identities=29%  Similarity=0.640  Sum_probs=91.6

Q ss_pred             CCcceeEEEECCCCCEEEEE--eCCCcEEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeC---CC
Q 008496          397 HQGEVNCVKWDPTGSLLASC--SDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASF---DS  471 (563)
Q Consensus       397 h~~~i~~~~~~~~~~~las~--s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~---dg  471 (563)
                      ..++|.+++|+|+|+.||.+  ..+..|.+||.+ .+.+..+  +...+.++.|+|.|.         +|+.|+.   .|
T Consensus        58 ~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~--~~~~~n~i~wsP~G~---------~l~~~g~~n~~G  125 (194)
T PF08662_consen   58 KEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSF--GTQPRNTISWSPDGR---------FLVLAGFGNLNG  125 (194)
T ss_pred             CCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEee--cCCCceEEEECCCCC---------EEEEEEccCCCc
Confidence            34579999999999987654  357799999997 5555555  356778999999986         5666654   46


Q ss_pred             eEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeC------CCcEEEEecCCCeeEEEE
Q 008496          472 TVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSL------DKSMHIWSLKEGKIVKTY  529 (563)
Q Consensus       472 ~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~------dg~v~iw~~~~~~~~~~~  529 (563)
                      .|.+||+++.+.+.... |. .++.++|||||++|++++.      |+.++||+.. |+++...
T Consensus       126 ~l~~wd~~~~~~i~~~~-~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~~  186 (194)
T PF08662_consen  126 DLEFWDVRKKKKISTFE-HS-DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYKK  186 (194)
T ss_pred             EEEEEECCCCEEeeccc-cC-cEEEEEEcCCCCEEEEEEeccceeccccEEEEEec-CeEeEec
Confidence            79999999888887765 33 4789999999999998864      6789999984 6665543

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.58  E-value=5e-13  Score=129.80  Aligned_cols=271  Identities=16%  Similarity=0.267  Sum_probs=188.5

Q ss_pred             CCCeEEEEECCCCCEE-EEEeCCCeEEEEEcCCceeEeeccCCC--CEEEEEeCCCCCEEEEeeCCCcEEEEECCCCcee
Q 008496          274 SKDVTTLDWNGEGTLL-ATGSYDGQARIWSTNGDLKCTLSKHKG--PIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWK  350 (563)
Q Consensus       274 ~~~V~~l~~s~~g~~l-~sg~~dg~i~vw~~~~~~~~~~~~h~~--~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~  350 (563)
                      ...-+.+..+|||+|+ ++|.+--.|++||+..-. ..|..|..  .|.-.-.+.+-..++.--.|.+|-+........ 
T Consensus        51 p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLS-LKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy-  128 (703)
T KOG2321|consen   51 PTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLS-LKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHY-  128 (703)
T ss_pred             ccccceeEecCCCcEEEEecccCCceEEEEcccce-eeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeee-
Confidence            4456788999999975 567788999999986432 23444433  333333333333344444566655543211100 


Q ss_pred             EEeeecccCeEEEecC-CCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCC
Q 008496          351 QQFEFHSGPTLDVDWR-NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQ  429 (563)
Q Consensus       351 ~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~  429 (563)
                       .... .....++.+. ....+.+++....||-+++..++-+..|....+.++++..++-..+|++|+.+|.+..||.+.
T Consensus       129 -~~RI-P~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~  206 (703)
T KOG2321|consen  129 -RTRI-PKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRD  206 (703)
T ss_pred             -eeec-CcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchh
Confidence             0000 0112233332 233455566667789999999888888887788999999999999999999999999999987


Q ss_pred             Cceeeeec------ccCC-----CEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEec-CCCCCEEEE
Q 008496          430 DKYVHDLR------EHSK-----EIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLN-GHREPVYSL  497 (563)
Q Consensus       430 ~~~~~~~~------~~~~-----~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~h~~~i~~l  497 (563)
                      ...+..+.      .|.+     .|+++.|+.+|         +-++.|..+|.|.|||+++.+++..-. +...||..+
T Consensus       207 ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~g---------L~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l  277 (703)
T KOG2321|consen  207 KSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDG---------LHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKL  277 (703)
T ss_pred             hhhheeeecccccCCCccccccCcceEEEecCCc---------eeEEeeccCCcEEEEEcccCCceeecccCCccceeee
Confidence            76655443      2333     38999998766         468999999999999999988776543 335689999


Q ss_pred             EEcCCC--CEEEEEeCCCcEEEEecCCCeeEEEEecCCCEEEEEEcCCCCEEEEEECCCeEEE
Q 008496          498 AFSPTG--EYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCV  558 (563)
Q Consensus       498 ~~spdg--~~lasgs~dg~v~iw~~~~~~~~~~~~~~~~i~~l~w~~~g~~la~~~~~~~v~v  558 (563)
                      .|-+.+  ..++|.. ...++|||-.+|+..........+.++|+=|++-.+.++-.++.+..
T Consensus       278 ~~~~~~~q~~v~S~D-k~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~Ane~~~m~~  339 (703)
T KOG2321|consen  278 DWQDTDQQNKVVSMD-KRILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTANESSKMHT  339 (703)
T ss_pred             cccccCCCceEEecc-hHHhhhcccccCCceeeccccCCcCceeeecCCceEEEecCCCccee
Confidence            997763  4555433 35689999999999888887788999999999988888866665543

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.57  E-value=7.5e-13  Score=123.11  Aligned_cols=272  Identities=17%  Similarity=0.258  Sum_probs=182.7

Q ss_pred             CceEEEEECCCC--CEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEEe
Q 008496          216 SEVCACAWSPAG--SLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGS  293 (563)
Q Consensus       216 ~~V~~~~~sp~~--~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~  293 (563)
                      ..|..++|.-++  .+|...+.|..+.+..+.........       ..++..    ....+.|..++.. + ..|++|-
T Consensus        56 ~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~-------~~~~~~----~l~~~~I~gl~~~-d-g~Litc~  122 (412)
T KOG3881|consen   56 DRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSL-------DDAKTV----SLGTKSIKGLKLA-D-GTLITCV  122 (412)
T ss_pred             hhhhhheeecCCceeEeeccccCcccccccccCCcccccc-------cccccc----ccccccccchhhc-C-CEEEEEe
Confidence            446677777654  45666657777777666543321110       000111    1112345444433 2 3677889


Q ss_pred             CCCeEEEEEcC-----CceeEeeccCCCCEEEEEeCCCCCEEE-EeeCC--CcEEEEECCCCceeEEeeecccCeEEEec
Q 008496          294 YDGQARIWSTN-----GDLKCTLSKHKGPIFSLKWNKKGDYLL-TGSCD--KTAIVWDVKTEEWKQQFEFHSGPTLDVDW  365 (563)
Q Consensus       294 ~dg~i~vw~~~-----~~~~~~~~~h~~~V~~l~~~~~~~~l~-s~s~D--~~v~iwd~~~~~~~~~~~~~~~~~~~~~~  365 (563)
                      .+|.+.+|...     ......+..+ ..+..+.-++...+++ +|+..  ..+++||+...  .+.|....-+.     
T Consensus       123 ~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~--~qiw~aKNvpn-----  194 (412)
T KOG3881|consen  123 SSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQS--KQIWSAKNVPN-----  194 (412)
T ss_pred             cCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccc--eeeeeccCCCC-----
Confidence            99999999865     2333334333 4567777777776665 48888  78999999876  44444322111     


Q ss_pred             CCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCC--CCEEEEEeCCCcEEEEeCCCC-ceeeeecccCCC
Q 008496          366 RNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT--GSLLASCSDDVTAKIWNMKQD-KYVHDLREHSKE  442 (563)
Q Consensus       366 ~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~--~~~las~s~dg~i~iwd~~~~-~~~~~~~~~~~~  442 (563)
                        +.      .+-.|-+|                 ++.+.|-+.  ...||+|+.-+.+|+||.+.+ +++..|..-..+
T Consensus       195 --D~------L~LrVPvW-----------------~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~  249 (412)
T KOG3881|consen  195 --DR------LGLRVPVW-----------------ITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENP  249 (412)
T ss_pred             --cc------ccceeeee-----------------eccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCc
Confidence              00      01122333                 345666655  678999999999999999865 467777766778


Q ss_pred             EEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEE-ecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q 008496          443 IYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYS-LNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLK  521 (563)
Q Consensus       443 i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~-~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~  521 (563)
                      ++++...|.+.         ++.+|..-|.+..||++.++.+.. +.+..+.|.+|..+|.+++||++|.|..|+|+|++
T Consensus       250 is~~~l~p~gn---------~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~k  320 (412)
T KOG3881|consen  250 ISSTGLTPSGN---------FIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIK  320 (412)
T ss_pred             ceeeeecCCCc---------EEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecc
Confidence            89998888775         688899999999999999998877 88899999999999999999999999999999999


Q ss_pred             CCeeEEEEecCCCEEEEEEcC
Q 008496          522 EGKIVKTYTGNGGIFEVCWNK  542 (563)
Q Consensus       522 ~~~~~~~~~~~~~i~~l~w~~  542 (563)
                      +.+++...--...++.+-+.+
T Consensus       321 trkll~kvYvKs~lt~il~~~  341 (412)
T KOG3881|consen  321 TRKLLHKVYVKSRLTFILLRD  341 (412)
T ss_pred             cchhhhhhhhhccccEEEecC
Confidence            977654432333344444433

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.56  E-value=7.4e-15  Score=147.91  Aligned_cols=234  Identities=21%  Similarity=0.384  Sum_probs=174.9

Q ss_pred             EeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecC-CCceEEEEeCCCeEEEEEcCC
Q 008496          309 CTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR-NNVSFATSSTDNMIYVCKIGE  387 (563)
Q Consensus       309 ~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~i~~~~~~~  387 (563)
                      ..+.+|.++|+|+.|...|.++++|+.|..++||...++.+.....+|.+.+.++.-. ++..+++++.|..|++|.+..
T Consensus       184 krLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~  263 (1113)
T KOG0644|consen  184 KRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPD  263 (1113)
T ss_pred             HHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCC
Confidence            3567899999999999999999999999999999999999999999999998888765 455668889999999999999


Q ss_pred             CcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeee---ecc-cCCCEEEEEEccCCCCCCCCCCcEE
Q 008496          388 NRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHD---LRE-HSKEIYTIRWSPTGSGTNNPNQQLI  463 (563)
Q Consensus       388 ~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~---~~~-~~~~i~~~~~~p~~~~~~~~~~~~~  463 (563)
                      +.|+..+.||++.|++++|+|-    ++.+.||++++||.+-.-.+..   +.. ....+-++.|...+.         -
T Consensus       264 ~~pvsvLrghtgavtaiafsP~----~sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~---------~  330 (1113)
T KOG0644|consen  264 GAPVSVLRGHTGAVTAIAFSPR----ASSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGD---------R  330 (1113)
T ss_pred             CchHHHHhccccceeeeccCcc----ccCCCCCceEeccccccccccCCCCCCcccccceeeeecccccc---------c
Confidence            9999999999999999999995    4889999999999871111110   000 112334444444332         4


Q ss_pred             EEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEecCCCeeEEEEecC-CCEEEEEEc
Q 008496          464 LASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTG-EYLASGSLDKSMHIWSLKEGKIVKTYTGN-GGIFEVCWN  541 (563)
Q Consensus       464 l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg-~~lasgs~dg~v~iw~~~~~~~~~~~~~~-~~i~~l~w~  541 (563)
                      ++|++.|+.-+.|....-      ..+...+.-+.++.|- .+.+++-.+-.+++|++.+|.+++...++ ..++-|.++
T Consensus       331 f~Tgs~d~ea~n~e~~~l------~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~H  404 (1113)
T KOG0644|consen  331 FLTGSRDGEARNHEFEQL------AWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVH  404 (1113)
T ss_pred             cccccCCcccccchhhHh------hhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeec
Confidence            678999988888865421      1122112222222232 46667777889999999999887766554 357889999


Q ss_pred             CCCCEEEE-EECCCeEEEEEe
Q 008496          542 KEGDKIAA-CFANHTVCVLDF  561 (563)
Q Consensus       542 ~~g~~la~-~~~~~~v~v~~~  561 (563)
                      |-..++|. +.-||...|||+
T Consensus       405 pfn~ri~msag~dgst~iwdi  425 (1113)
T KOG0644|consen  405 PFNPRIAMSAGYDGSTIIWDI  425 (1113)
T ss_pred             CCCcHhhhhccCCCceEeeec
Confidence            98876663 456889999986

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.56  E-value=6.3e-14  Score=135.12  Aligned_cols=220  Identities=24%  Similarity=0.376  Sum_probs=153.0

Q ss_pred             ccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCC-ceeE-eeccCCCCEEEEEeCCC--CCEEEEeeCCCcEEEEECCC
Q 008496          271 NEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNG-DLKC-TLSKHKGPIFSLKWNKK--GDYLLTGSCDKTAIVWDVKT  346 (563)
Q Consensus       271 ~~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~-~~~~-~~~~h~~~V~~l~~~~~--~~~l~s~s~D~~v~iwd~~~  346 (563)
                      .+|.+.|.|++|+.+|.+|++|+.|-.+.|||.-. ++.. .-.+|+..|++++|-|.  ...+++|+.|+.|+++|+..
T Consensus        47 ~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~  126 (758)
T KOG1310|consen   47 TGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDS  126 (758)
T ss_pred             ccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEeccc
Confidence            45678899999999999999999999999999753 3333 45789999999999984  46789999999999999864


Q ss_pred             CceeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCC-CEEEEEeCCCcEEEE
Q 008496          347 EEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTG-SLLASCSDDVTAKIW  425 (563)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~-~~las~s~dg~i~iw  425 (563)
                      .+-.                        +.       |-+...+...+..|...|..++--|++ ..+.++++||+|+-+
T Consensus       127 ~~~~------------------------~~-------d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQy  175 (758)
T KOG1310|consen  127 SKEG------------------------GM-------DHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQY  175 (758)
T ss_pred             cccc------------------------cc-------ccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeee
Confidence            2100                        00       111122344566788889899999998 678899999999999


Q ss_pred             eCCCCcee-ee------ec---ccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC--------Ce-----
Q 008496          426 NMKQDKYV-HD------LR---EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL--------GK-----  482 (563)
Q Consensus       426 d~~~~~~~-~~------~~---~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~--------~~-----  482 (563)
                      |++..... ..      +.   ..--...++..+|..        ..+||.|+.|-..++||.+.        +.     
T Consensus       176 DiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~r--------p~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~p  247 (758)
T KOG1310|consen  176 DIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSR--------PYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCP  247 (758)
T ss_pred             cccCCccCCccccccHHHHHhchhhheeeeeeecCCC--------CceEEecCCCchhhhhhhhhhccCCCCCccccCCC
Confidence            99863211 11      00   111234666776654        35899999999999999431        11     


Q ss_pred             -----EEEEe-cCCC-----------CCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEE
Q 008496          483 -----LLYSL-NGHR-----------EPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTY  529 (563)
Q Consensus       483 -----~~~~~-~~h~-----------~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~  529 (563)
                           |+..+ .+|.           ..++-+.|+|+|.-|...=..-.|+++|+..++....|
T Consensus       248 p~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y  311 (758)
T KOG1310|consen  248 PKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPY  311 (758)
T ss_pred             CcccchhheecCccccCcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCceee
Confidence                 12111 2222           12566899999965544322336999999887755444

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.55  E-value=2.5e-13  Score=130.91  Aligned_cols=241  Identities=20%  Similarity=0.278  Sum_probs=158.8

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCeEEEEEcCCc--e----eEeeccCCCCEEEEEe-----CCCCCEEEEeeCCCcEEEEE
Q 008496          275 KDVTTLDWNGEGTLLATGSYDGQARIWSTNGD--L----KCTLSKHKGPIFSLKW-----NKKGDYLLTGSCDKTAIVWD  343 (563)
Q Consensus       275 ~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~--~----~~~~~~h~~~V~~l~~-----~~~~~~l~s~s~D~~v~iwd  343 (563)
                      ..++...++..|.+|+-.- ...+.+|+..|.  +    ...+-.-++| ++-.|     .|.+--++.|-.-|.|.+.|
T Consensus       124 g~~~~~~~~~~gd~lcFnv-g~~lyv~~~~g~~~~~~pi~k~~y~gt~P-~cHdfn~~~a~~~g~dllIGf~tGqvq~id  201 (636)
T KOG2394|consen  124 GIVTNTNQSGKGDRLCFNV-GRELYVYSYRGAADLSKPIDKREYKGTSP-TCHDFNSFTATPKGLDLLIGFTTGQVQLID  201 (636)
T ss_pred             cceeeccccCCCCEEEEec-CCeEEEEEccCcchhccchhhhcccCCCC-ceecccccccCCCCcceEEeeccCceEEec
Confidence            3456666677777766533 246778876542  1    1111111222 22333     35666788888888999888


Q ss_pred             CCCCceeEEee----ecccCeEEEecC--CCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEe
Q 008496          344 VKTEEWKQQFE----FHSGPTLDVDWR--NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCS  417 (563)
Q Consensus       344 ~~~~~~~~~~~----~~~~~~~~~~~~--~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s  417 (563)
                      ....+..+.|.    .....+.++.|.  ++..|+.+..+|.+++++......      -+  -.+-...+++..++.. 
T Consensus       202 p~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~------~t--~p~~~~~k~~~~f~i~-  272 (636)
T KOG2394|consen  202 PINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCG------AT--APSYQALKDGDQFAIL-  272 (636)
T ss_pred             chhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeecccccc------CC--CCcccccCCCCeeEEe-
Confidence            76543332221    223567889996  456788889999999987621110      00  0111223345444332 


Q ss_pred             CCCcEEEEeCC-CCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEE
Q 008496          418 DDVTAKIWNMK-QDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYS  496 (563)
Q Consensus       418 ~dg~i~iwd~~-~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~  496 (563)
                            .|-.. +..++..+.--.+.|..++|+|+|.         +||+.|.||.+||||..+.+++..++.--+...|
T Consensus       273 ------t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~---------~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLC  337 (636)
T KOG2394|consen  273 ------TSKSKKTRNPVARWHIGEGSINEFAFSPDGK---------YLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLC  337 (636)
T ss_pred             ------eeeccccCCccceeEeccccccceeEcCCCc---------eEEEEecCceEEEeeccHHHHHHHHHhhccceEE
Confidence                  22211 2234444444456889999999986         8999999999999999988887777766678999


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEecC-CCEEEEEEc
Q 008496          497 LAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGN-GGIFEVCWN  541 (563)
Q Consensus       497 l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~~-~~i~~l~w~  541 (563)
                      ++|||||+||++|+.|..|.||.+..++++..-.++ ..|..++|+
T Consensus       338 vcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFD  383 (636)
T KOG2394|consen  338 VCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFD  383 (636)
T ss_pred             EEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeec
Confidence            999999999999999999999999999998876654 456677776

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.54  E-value=2.3e-12  Score=128.14  Aligned_cols=295  Identities=17%  Similarity=0.275  Sum_probs=201.4

Q ss_pred             ceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCC--CCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEEeC
Q 008496          217 EVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQN--GPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSY  294 (563)
Q Consensus       217 ~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~  294 (563)
                      ...|++|+....++|.||.||.+++-.+.+.+.......  .+.+...-    ....+|+..|.-+.|+.+.+.|.|...
T Consensus        16 kL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmN----QtLeGH~~sV~vvTWNe~~QKLTtSDt   91 (1189)
T KOG2041|consen   16 KLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMN----QTLEGHNASVMVVTWNENNQKLTTSDT   91 (1189)
T ss_pred             eEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchh----hhhccCcceEEEEEeccccccccccCC
Confidence            367999999999999999999999999876543322111  12222111    223456788999999999999999999


Q ss_pred             CCeEEEEEcC-Ccee--EeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecCCCceE
Q 008496          295 DGQARIWSTN-GDLK--CTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSF  371 (563)
Q Consensus       295 dg~i~vw~~~-~~~~--~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  371 (563)
                      +|.|.+|-+- |...  .+-...++-|.+++|+.+|..+.....||.|.+=.+...                        
T Consensus        92 ~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGN------------------------  147 (1189)
T KOG2041|consen   92 SGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGN------------------------  147 (1189)
T ss_pred             CceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccc------------------------
Confidence            9999999864 3221  123456678999999999999999999998877544322                        


Q ss_pred             EEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCc-------e-ee---eecccC
Q 008496          372 ATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDK-------Y-VH---DLREHS  440 (563)
Q Consensus       372 ~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~-------~-~~---~~~~~~  440 (563)
                               ++|.-       .++|.  ....+.|++|.+.+..+-..|.+.+||....-       + +.   .+....
T Consensus       148 ---------RIwgK-------eLkg~--~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~  209 (1189)
T KOG2041|consen  148 ---------RIWGK-------ELKGQ--LLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFP  209 (1189)
T ss_pred             ---------eecch-------hcchh--eccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCC
Confidence                     12211       01110  12257789998888778888999999865321       1 11   112223


Q ss_pred             CCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCe-EEEEecCCCCCEEEEEEcCCCCEEEEEeCC-------
Q 008496          441 KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK-LLYSLNGHREPVYSLAFSPTGEYLASGSLD-------  512 (563)
Q Consensus       441 ~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~-~~~~~~~h~~~i~~l~~spdg~~lasgs~d-------  512 (563)
                      ..|..+.|.........|+. ..|+.+..+|.+.|..-.+.. ++..-.+  -.|..+.|+|+|.+||.+|.|       
T Consensus       210 ~kia~i~w~~g~~~~v~pdr-P~lavcy~nGr~QiMR~eND~~Pvv~dtg--m~~vgakWnh~G~vLAvcG~~~da~~~~  286 (1189)
T KOG2041|consen  210 TKIAEIEWNTGPYQPVPPDR-PRLAVCYANGRMQIMRSENDPEPVVVDTG--MKIVGAKWNHNGAVLAVCGNDSDADEPT  286 (1189)
T ss_pred             ccccceeeccCccccCCCCC-CEEEEEEcCceehhhhhcCCCCCeEEecc--cEeecceecCCCcEEEEccCcccccCcc
Confidence            34677788644333333443 468889999998887554432 2222222  457889999999999998865       


Q ss_pred             --CcEEEEecCCCeeEEEEecC-CCEEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496          513 --KSMHIWSLKEGKIVKTYTGN-GGIFEVCWNKEGDKIAACFANHTVCVLDFR  562 (563)
Q Consensus       513 --g~v~iw~~~~~~~~~~~~~~-~~i~~l~w~~~g~~la~~~~~~~v~v~~~~  562 (563)
                        +.|++|.. -|+++.+++.. ..|++++|-..|-++|.+ .|+.+.+-++|
T Consensus       287 d~n~v~Fysp-~G~i~gtlkvpg~~It~lsWEg~gLriA~A-vdsfiyfanIR  337 (1189)
T KOG2041|consen  287 DSNKVHFYSP-YGHIVGTLKVPGSCITGLSWEGTGLRIAIA-VDSFIYFANIR  337 (1189)
T ss_pred             ccceEEEecc-chhheEEEecCCceeeeeEEcCCceEEEEE-ecceEEEEeec
Confidence              35777764 47788888764 469999999999999988 56677777776

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.53  E-value=1.2e-12  Score=119.80  Aligned_cols=323  Identities=19%  Similarity=0.303  Sum_probs=214.5

Q ss_pred             eEecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCE
Q 008496          209 TILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTL  288 (563)
Q Consensus       209 ~~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~  288 (563)
                      ..++||.+.|++...-|...-+.+.+.|.++|||--.+....     .|    .+++      ...++++++.+.++...
T Consensus        18 ~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~-----wp----sI~~------~mP~~~~~~~y~~e~~~   82 (404)
T KOG1409|consen   18 SKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQY-----WP----SIYH------YMPSPCSAMEYVSESRR   82 (404)
T ss_pred             hhhcCchhhhhhheeccCCCCeEEccccceeeeEEecccccc-----Cc----hhhh------hCCCCceEeeeeccceE
Confidence            456899999999988898888999999999999963321110     00    1111      12467899999999999


Q ss_pred             EEEEeCCCeEEEEEcCCc-----eeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeeccc---Ce
Q 008496          289 LATGSYDGQARIWSTNGD-----LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSG---PT  360 (563)
Q Consensus       289 l~sg~~dg~i~vw~~~~~-----~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~---~~  360 (563)
                      |+.|-.+|++.-+.....     .......|.+.|+.+-|+-...++++.+.|+.+.---.+.+..+..+.+...   ..
T Consensus        83 L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~  162 (404)
T KOG1409|consen   83 LYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQ  162 (404)
T ss_pred             EEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCc
Confidence            999999999988875432     2223457999999999999999999999998765444444444433332221   11


Q ss_pred             EEEecCCCceEEEEeCCCeEEEEEc--CCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCc-eeeeec
Q 008496          361 LDVDWRNNVSFATSSTDNMIYVCKI--GENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDK-YVHDLR  437 (563)
Q Consensus       361 ~~~~~~~~~~~~~~~~d~~i~~~~~--~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~-~~~~~~  437 (563)
                      .++.     ....+...+.|....+  ..-.++.++.+|.+.+.+++|.+...+|.+|..|..+.+||+...+ ....+.
T Consensus       163 ~d~~-----~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~  237 (404)
T KOG1409|consen  163 FDAL-----YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQ  237 (404)
T ss_pred             eeeE-----EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeec
Confidence            1111     1122333444544444  3446788999999999999999999999999999999999986544 346778


Q ss_pred             ccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEE---E--------------------------ec
Q 008496          438 EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLY---S--------------------------LN  488 (563)
Q Consensus       438 ~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~---~--------------------------~~  488 (563)
                      +|...+..+...+...         .|.+++.||.|-+|+....+...   .                          +.
T Consensus       238 gh~~kV~~l~~~~~t~---------~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpffwn~~~m~~~k~~glr  308 (404)
T KOG1409|consen  238 GHNDKVQALSYAQHTR---------QLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFWNFRQMWDRKQLGLR  308 (404)
T ss_pred             cchhhhhhhhhhhhhe---------eeeeccCCCeEEEEeccceeecCccccccchhhhhCchHHHHHHHHHhhhhhhhh
Confidence            8988888887766543         68899999999999986433210   0                          00


Q ss_pred             CCC-----CCEEEEEEcCCCCEEEEEeCCCcEE--------EEecCCCeeEEEE-ecCCCEEEEEEcCCCCEEEEEECCC
Q 008496          489 GHR-----EPVYSLAFSPTGEYLASGSLDKSMH--------IWSLKEGKIVKTY-TGNGGIFEVCWNKEGDKIAACFANH  554 (563)
Q Consensus       489 ~h~-----~~i~~l~~spdg~~lasgs~dg~v~--------iw~~~~~~~~~~~-~~~~~i~~l~w~~~g~~la~~~~~~  554 (563)
                      .|.     ..|...+ +.......+-+..-.++        |+|... ..+.++ +.+.+|+.+....+-..|++++.|.
T Consensus       309 ~h~crkcg~avc~~c-~s~~~~~p~mg~e~~vR~~~~c~~~i~~~~~-t~LA~phei~tgItamhlqetlglLvTsG~~R  386 (404)
T KOG1409|consen  309 QHHCRKCGKAVCGKC-SSNRSSYPTMGFEFSVRVCDSCYPTIKDEER-TPLAIPHEIKTGITAMHLQETLGLLVTSGTDR  386 (404)
T ss_pred             hhhhhhhhhhcCccc-ccCccccccccceeEEEEecccchhhhcCCC-CccccccccccceeEEEhhhhccceeecCCce
Confidence            010     1111111 11111222222222333        333332 122222 3356799999988888999999999


Q ss_pred             eEEEEEee
Q 008496          555 TVCVLDFR  562 (563)
Q Consensus       555 ~v~v~~~~  562 (563)
                      .+.|||+|
T Consensus       387 vi~iwd~~  394 (404)
T KOG1409|consen  387 VIKIWDVR  394 (404)
T ss_pred             EEEEEech
Confidence            99999987

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.51  E-value=9.3e-12  Score=127.86  Aligned_cols=206  Identities=20%  Similarity=0.248  Sum_probs=139.6

Q ss_pred             CeEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEEEeeCC---CcEEEEECCCCceeEEeeecccCeEEEecCCCceEE
Q 008496          296 GQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCD---KTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFA  372 (563)
Q Consensus       296 g~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D---~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  372 (563)
                      ..|.+++.++.....+..+...+.+.+|+|+|++|+.++.+   ..|.+||+.++....                     
T Consensus       170 ~~l~~~d~~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~---------------------  228 (417)
T TIGR02800       170 YELQVADYDGANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK---------------------  228 (417)
T ss_pred             ceEEEEcCCCCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE---------------------
Confidence            36778888776666677777889999999999999877644   368888876653211                     


Q ss_pred             EEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEE-EEeCCC--cEEEEeCCCCceeeeecccCCCEEEEEEc
Q 008496          373 TSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLA-SCSDDV--TAKIWNMKQDKYVHDLREHSKEIYTIRWS  449 (563)
Q Consensus       373 ~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~la-s~s~dg--~i~iwd~~~~~~~~~~~~~~~~i~~~~~~  449 (563)
                                           +..+.+.+.+++|+|||+.|+ +.+.++  .|.+|++.++.. ..+..+........|+
T Consensus       229 ---------------------~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~s  286 (417)
T TIGR02800       229 ---------------------VASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQL-TRLTNGPGIDTEPSWS  286 (417)
T ss_pred             ---------------------eecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCE-EECCCCCCCCCCEEEC
Confidence                                 111223345688999998765 444444  588889887654 3344444445567888


Q ss_pred             cCCCCCCCCCCcEEEEEEeCCC--eEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCC---cEEEEecCCCe
Q 008496          450 PTGSGTNNPNQQLILASASFDS--TVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDK---SMHIWSLKEGK  524 (563)
Q Consensus       450 p~~~~~~~~~~~~~l~s~s~dg--~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg---~v~iw~~~~~~  524 (563)
                      |++.        .++.+...++  .|.++|+..++. ..+..+...+..++|+|||++|+.++.++   .|.+||+.++.
T Consensus       287 ~dg~--------~l~~~s~~~g~~~iy~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~  357 (417)
T TIGR02800       287 PDGK--------SIAFTSDRGGSPQIYMMDADGGEV-RRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGG  357 (417)
T ss_pred             CCCC--------EEEEEECCCCCceEEEEECCCCCE-EEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCC
Confidence            8775        2334443333  578888876654 33443455677889999999999888776   79999998765


Q ss_pred             eEEEEecCCCEEEEEEcCCCCEEEEEECCC
Q 008496          525 IVKTYTGNGGIFEVCWNKEGDKIAACFANH  554 (563)
Q Consensus       525 ~~~~~~~~~~i~~l~w~~~g~~la~~~~~~  554 (563)
                      .. .+.........+|+|||+.|++++.++
T Consensus       358 ~~-~l~~~~~~~~p~~spdg~~l~~~~~~~  386 (417)
T TIGR02800       358 ER-VLTDTGLDESPSFAPNGRMILYATTRG  386 (417)
T ss_pred             eE-EccCCCCCCCceECCCCCEEEEEEeCC
Confidence            43 233233345678999999998876654

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.50  E-value=3.6e-11  Score=115.72  Aligned_cols=312  Identities=16%  Similarity=0.276  Sum_probs=202.3

Q ss_pred             CceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEEeCC
Q 008496          216 SEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYD  295 (563)
Q Consensus       216 ~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~d  295 (563)
                      -++..++|||.|.+|++...- -|.+|.-....          ....+         ....|..+.|||.+++|.+=+..
T Consensus        33 ~p~~~~~~SP~G~~l~~~~~~-~V~~~~g~~~~----------~l~~~---------~~~~V~~~~fSP~~kYL~tw~~~   92 (561)
T COG5354          33 WPVAYVSESPLGTYLFSEHAA-GVECWGGPSKA----------KLVRF---------RHPDVKYLDFSPNEKYLVTWSRE   92 (561)
T ss_pred             cchhheeecCcchheehhhcc-ceEEccccchh----------heeee---------ecCCceecccCcccceeeeeccC
Confidence            356788999999999986554 47788643221          01111         13569999999999999987654


Q ss_pred             C---------------eEEEEEcC-CceeEeeccCCCC--EE-EEEeCCCCCEEEEeeCCCcEEEEECCCCceeEE-ee-
Q 008496          296 G---------------QARIWSTN-GDLKCTLSKHKGP--IF-SLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQ-FE-  354 (563)
Q Consensus       296 g---------------~i~vw~~~-~~~~~~~~~h~~~--V~-~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~-~~-  354 (563)
                      +               .+.+||.. |.++..+..-..+  .+ -++|+-+.++++-. ....+.|+++ +...... +. 
T Consensus        93 pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~n~~~~p~~~  170 (561)
T COG5354          93 PIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEI-TDNIEEHPFKN  170 (561)
T ss_pred             CccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEec-CCccccCchhh
Confidence            4               48999965 5566666665555  55 68899988887644 3347899986 4332211 10 


Q ss_pred             ecccCeEEEecCCC---ceEEE-----EeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeC--------
Q 008496          355 FHSGPTLDVDWRNN---VSFAT-----SSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD--------  418 (563)
Q Consensus       355 ~~~~~~~~~~~~~~---~~~~~-----~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~--------  418 (563)
                      .....+.++.|.+.   ..++.     ....+++++|.+..+.++.+-.-..-.=..+.|++.|++|..--.        
T Consensus       171 lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKs  250 (561)
T COG5354         171 LRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKS  250 (561)
T ss_pred             ccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccc
Confidence            11123455555433   12222     245678888888866655432222222346889999987653211        


Q ss_pred             ---CCcEEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEE
Q 008496          419 ---DVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVY  495 (563)
Q Consensus       419 ---dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~  495 (563)
                         ...+.|+++....+... ....++|...+|.|.+.       +..+++|-++..+.++|++.. ..+.+.  ...=+
T Consensus       251 yfgesnLyl~~~~e~~i~V~-~~~~~pVhdf~W~p~S~-------~F~vi~g~~pa~~s~~~lr~N-l~~~~P--e~~rN  319 (561)
T COG5354         251 YFGESNLYLLRITERSIPVE-KDLKDPVHDFTWEPLSS-------RFAVISGYMPASVSVFDLRGN-LRFYFP--EQKRN  319 (561)
T ss_pred             eeccceEEEEeeccccccee-ccccccceeeeecccCC-------ceeEEecccccceeecccccc-eEEecC--Ccccc
Confidence               23467777764333222 25578999999999875       356778889999999999854 544443  33447


Q ss_pred             EEEEcCCCCEEEEEeCC---CcEEEEecCCCeeEE-EEecCCCEEEEEEcCCCCEEEEEEC------CCeEEEEEe
Q 008496          496 SLAFSPTGEYLASGSLD---KSMHIWSLKEGKIVK-TYTGNGGIFEVCWNKEGDKIAACFA------NHTVCVLDF  561 (563)
Q Consensus       496 ~l~~spdg~~lasgs~d---g~v~iw~~~~~~~~~-~~~~~~~i~~l~w~~~g~~la~~~~------~~~v~v~~~  561 (563)
                      .+.|||.+++++.++.|   |.|.||+.....++. .+.+.. ..-+.|+|||..+-+.+.      |..+.|||+
T Consensus       320 T~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n-~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v  394 (561)
T COG5354         320 TIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLN-TSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDV  394 (561)
T ss_pred             cccccCcccEEEEecCCccccceEEeccCCceEEEEEeecCC-ceEeeccCCceEEEecCCCcccccCcceEEEEe
Confidence            78999999999998876   689999987665444 444322 233469999998887754      345778876

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.50  E-value=2.9e-11  Score=117.77  Aligned_cols=272  Identities=17%  Similarity=0.370  Sum_probs=167.8

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCeEEEEEcCCc-eeEeeccCCCCEEEEEeCCCCCEEEEe-----eCCC-----cEEEEE
Q 008496          275 KDVTTLDWNGEGTLLATGSYDGQARIWSTNGD-LKCTLSKHKGPIFSLKWNKKGDYLLTG-----SCDK-----TAIVWD  343 (563)
Q Consensus       275 ~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~-~~~~~~~h~~~V~~l~~~~~~~~l~s~-----s~D~-----~v~iwd  343 (563)
                      .+....++|++|++++.+. +..++|++.... ...+.  ....++.|.|+|.|++|.+-     ..++     .+.+|+
T Consensus        35 ~~~~v~~~S~~G~lfA~~~-~~~v~i~~~~~~~~~lt~--~~~~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~  111 (566)
T KOG2315|consen   35 RPCNVFAYSNNGRLFAYSD-NQVVKVFEIATLKVVLCV--ELKKTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYN  111 (566)
T ss_pred             CcceeEEEcCCCcEEEEEc-CCeEEEEEccCCcEEEEe--ccceeeeeeecccccccccccccccccCCCCCCCceeeee
Confidence            3467788999999888754 568888886543 22222  22278999999999998762     2233     467999


Q ss_pred             CCCCceeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCc----------------------------------
Q 008496          344 VKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENR----------------------------------  389 (563)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~----------------------------------  389 (563)
                      +.++.....+...........|..+..+++=-..+.+++++....+                                  
T Consensus       112 vet~~~~s~~q~k~Q~~W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kG  191 (566)
T KOG2315|consen  112 VETGVQRSQIQKKMQNGWVPQFSIDESLAARLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKG  191 (566)
T ss_pred             eccceehhheehhhhcCcccccccchhhhhhhhcceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEEEccCCCC
Confidence            9885433333322222122333333222211112222233222110                                  


Q ss_pred             ---ceeeec----C-C---------CcceeEEEECCCCCE-EE--EEeCCC---------cEEEEeCCCCceeeeecccC
Q 008496          390 ---PIKTFA----G-H---------QGEVNCVKWDPTGSL-LA--SCSDDV---------TAKIWNMKQDKYVHDLREHS  440 (563)
Q Consensus       390 ---~~~~~~----~-h---------~~~i~~~~~~~~~~~-la--s~s~dg---------~i~iwd~~~~~~~~~~~~~~  440 (563)
                         .++.+.    + |         ...=..+.|++-|.- |+  +..-|.         ++.+.++....++..+. ..
T Consensus       192 aPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~-k~  270 (566)
T KOG2315|consen  192 APASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL-KE  270 (566)
T ss_pred             CCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC-CC
Confidence               011110    0 0         011124667766552 22  222233         45566655334333332 36


Q ss_pred             CCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCC---CcEEE
Q 008496          441 KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLD---KSMHI  517 (563)
Q Consensus       441 ~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~d---g~v~i  517 (563)
                      ++|+++.|+|.+.       +..++.|-+-..+.|+|++ +..++.+.  .+|-+++-|+|.|++|+.+|.+   |.|-|
T Consensus       271 GPVhdv~W~~s~~-------EF~VvyGfMPAkvtifnlr-~~~v~df~--egpRN~~~fnp~g~ii~lAGFGNL~G~mEv  340 (566)
T KOG2315|consen  271 GPVHDVTWSPSGR-------EFAVVYGFMPAKVTIFNLR-GKPVFDFP--EGPRNTAFFNPHGNIILLAGFGNLPGDMEV  340 (566)
T ss_pred             CCceEEEECCCCC-------EEEEEEecccceEEEEcCC-CCEeEeCC--CCCccceEECCCCCEEEEeecCCCCCceEE
Confidence            8999999999885       3567788899999999987 67777764  4677899999999999998875   78999


Q ss_pred             EecCCCeeEEEEecCCCEEEEEEcCCCCEEEEEECC------CeEEEEEe
Q 008496          518 WSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFAN------HTVCVLDF  561 (563)
Q Consensus       518 w~~~~~~~~~~~~~~~~i~~l~w~~~g~~la~~~~~------~~v~v~~~  561 (563)
                      ||+.+.+++..+.... -+-+.|+|||.++.++...      ..+.||+.
T Consensus       341 wDv~n~K~i~~~~a~~-tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhy  389 (566)
T KOG2315|consen  341 WDVPNRKLIAKFKAAN-TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHY  389 (566)
T ss_pred             EeccchhhccccccCC-ceEEEEcCCCcEEEEEeccccEEecCCeEEEEe
Confidence            9999988887776533 2446899999999887543      45677764

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.50  E-value=3.7e-12  Score=134.00  Aligned_cols=252  Identities=17%  Similarity=0.257  Sum_probs=174.6

Q ss_pred             EEcCCceeEeeccCCCCEEEEEeCCCC-CEEEEeeCCCcEEEEECCCCc-----e--eEEeeecccCeEEEec-CCCceE
Q 008496          301 WSTNGDLKCTLSKHKGPIFSLKWNKKG-DYLLTGSCDKTAIVWDVKTEE-----W--KQQFEFHSGPTLDVDW-RNNVSF  371 (563)
Q Consensus       301 w~~~~~~~~~~~~h~~~V~~l~~~~~~-~~l~s~s~D~~v~iwd~~~~~-----~--~~~~~~~~~~~~~~~~-~~~~~~  371 (563)
                      |...|.++..+..|...|..++.++.. .+|+|||.||+|++||.+...     .  ..++......+..+.. .+...|
T Consensus      1034 W~p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~ 1113 (1431)
T KOG1240|consen 1034 WNPRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQF 1113 (1431)
T ss_pred             CCccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeE
Confidence            888899999999999999999887655 899999999999999986421     1  2233333445555544 456678


Q ss_pred             EEEeCCCeEEEEEcCCCc-------ceeeecCCC-c-ceeEEEECC-CCC-EEEEEeCCCcEEEEeCCCCceeeeec--c
Q 008496          372 ATSSTDNMIYVCKIGENR-------PIKTFAGHQ-G-EVNCVKWDP-TGS-LLASCSDDVTAKIWNMKQDKYVHDLR--E  438 (563)
Q Consensus       372 ~~~~~d~~i~~~~~~~~~-------~~~~~~~h~-~-~i~~~~~~~-~~~-~las~s~dg~i~iwd~~~~~~~~~~~--~  438 (563)
                      |.++.||.|.+.+++...       ..+....+. + .+.+-+|.. .+. .|+.+..-+.|..||.+.......++  .
T Consensus      1114 Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~ 1193 (1431)
T KOG1240|consen 1114 AVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQL 1193 (1431)
T ss_pred             EEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCc
Confidence            999999999999987621       111111121 2 233334432 233 67888889999999998765544333  3


Q ss_pred             cCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEec-CCCCCEEEEEEcCCC---CEEEEEe--CC
Q 008496          439 HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLN-GHREPVYSLAFSPTG---EYLASGS--LD  512 (563)
Q Consensus       439 ~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~h~~~i~~l~~spdg---~~lasgs--~d  512 (563)
                      ..+.|++++.+|.+.         +++.|..-|.+-+||++-+..+.+.. ++..+|..+..+|-.   .+.++++  ..
T Consensus      1194 ~hG~vTSi~idp~~~---------WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~ 1264 (1431)
T KOG1240|consen 1194 RHGLVTSIVIDPWCN---------WLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSN 1264 (1431)
T ss_pred             cccceeEEEecCCce---------EEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCC
Confidence            457899999999764         89999999999999999888877653 355788888777643   4555544  46


Q ss_pred             CcEEEEecCCCeeEEEEecCCC--------------------EEEEEEcCCCCEEEEEECCCeEEEEEe
Q 008496          513 KSMHIWSLKEGKIVKTYTGNGG--------------------IFEVCWNKEGDKIAACFANHTVCVLDF  561 (563)
Q Consensus       513 g~v~iw~~~~~~~~~~~~~~~~--------------------i~~l~w~~~g~~la~~~~~~~v~v~~~  561 (563)
                      +.|.+|++.+|..-.++-...+                    ....+..-.+..+.+|++|..|+-||.
T Consensus      1265 nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~ 1333 (1431)
T KOG1240|consen 1265 NEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDP 1333 (1431)
T ss_pred             CceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccC
Confidence            7899999999865544422101                    112233334457778888989998885

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.49  E-value=2.2e-12  Score=133.93  Aligned_cols=222  Identities=18%  Similarity=0.272  Sum_probs=163.4

Q ss_pred             CCEEEEEeCCCeEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCe-----
Q 008496          286 GTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPT-----  360 (563)
Q Consensus       286 g~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~-----  360 (563)
                      +.+++++..-+.+..-..+......+..   -|+...+.-....++.+..++.+.+||...+.............     
T Consensus        61 ~~~~v~~~~~~~v~~~~~~~~~~~~~s~---wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~  137 (967)
T KOG0974|consen   61 SGKIVTCAKSDEVYVKEASNQIIERFSD---WIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSL  137 (967)
T ss_pred             cceEEEEEeecceeecchhhhhhhhccc---cccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEE
Confidence            3455565555555444333322222322   33334555567788889999999999987765444332222111     


Q ss_pred             EEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceee-eeccc
Q 008496          361 LDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVH-DLREH  439 (563)
Q Consensus       361 ~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~-~~~~~  439 (563)
                      ....-.....+++++.-+.|.+|+.....+-..+.||.+.|-.+.|+-||++++++|+|.++|+|++.+.+... ..-+|
T Consensus       138 ~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgH  217 (967)
T KOG0974|consen  138 IIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGH  217 (967)
T ss_pred             EEeccCcEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccc
Confidence            11122344567788888899999986544333688999999999999999999999999999999999887665 56689


Q ss_pred             CCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCC-CCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 008496          440 SKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHR-EPVYSLAFSPTGEYLASGSLDKSMHIW  518 (563)
Q Consensus       440 ~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~-~~i~~l~~spdg~~lasgs~dg~v~iw  518 (563)
                      +..+..+++.|.           .+++++.|.+.++|+.. ++.+..+.+|. ..|..++.+++...++|++.|+.+++|
T Consensus       218 saRvw~~~~~~n-----------~i~t~gedctcrvW~~~-~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~  285 (967)
T KOG0974|consen  218 SARVWACCFLPN-----------RIITVGEDCTCRVWGVN-GTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLW  285 (967)
T ss_pred             cceeEEEEeccc-----------eeEEeccceEEEEEecc-cceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhh
Confidence            999999999885           58999999999999765 55555777775 469999999999999999999999999


Q ss_pred             ecCC
Q 008496          519 SLKE  522 (563)
Q Consensus       519 ~~~~  522 (563)
                      ++..
T Consensus       286 ~l~~  289 (967)
T KOG0974|consen  286 DLNG  289 (967)
T ss_pred             hhhc
Confidence            9864

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.48  E-value=2e-12  Score=118.19  Aligned_cols=313  Identities=17%  Similarity=0.291  Sum_probs=175.0

Q ss_pred             CceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccc--------cCCCCeEEEEECCCC-
Q 008496          216 SEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTN--------EKSKDVTTLDWNGEG-  286 (563)
Q Consensus       216 ~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~V~~l~~s~~g-  286 (563)
                      +-|.++.|...|.+||||..+|.+.++.-.....      +.....  ..+..+..        .....|..+.|.+++ 
T Consensus        26 diis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~------~ey~~~--t~fqshepEFDYLkSleieEKinkIrw~~~~n   97 (433)
T KOG1354|consen   26 DIISAVEFDHYGERLATGDKGGRVVLFEREKLYK------GEYNFQ--TEFQSHEPEFDYLKSLEIEEKINKIRWLDDGN   97 (433)
T ss_pred             cceeeEEeecccceEeecCCCCeEEEeecccccc------cceeee--eeeeccCcccchhhhhhhhhhhhhceecCCCC
Confidence            4478999999999999999999999997433211      100110  11111111        112347788998865 


Q ss_pred             -CEEEEEeCCCeEEEEEcCCceeEe------eccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEe-eeccc
Q 008496          287 -TLLATGSYDGQARIWSTNGDLKCT------LSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQF-EFHSG  358 (563)
Q Consensus       287 -~~l~sg~~dg~i~vw~~~~~~~~~------~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~-~~~~~  358 (563)
                       ..++..+.|.+|++|....+....      -.+..+.|++|+.      .+.+..|-.+..-      +.+.+ ..|..
T Consensus        98 ~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~------p~~~~~~~~vea~------prRv~aNaHty  165 (433)
T KOG1354|consen   98 LAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRL------PVEGRHDLEVEAS------PRRVYANAHTY  165 (433)
T ss_pred             ccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeec------eeeccccceeeee------eeeecccccee
Confidence             467778899999999754221100      0001111222211      0111111110000      00000 11222


Q ss_pred             CeEEEecCCCceEEEEeCCCeEEEEEcCCCc---ceeeecCC-----CcceeEEEECCC-CCEEEEEeCCCcEEEEeCCC
Q 008496          359 PTLDVDWRNNVSFATSSTDNMIYVCKIGENR---PIKTFAGH-----QGEVNCVKWDPT-GSLLASCSDDVTAKIWNMKQ  429 (563)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~---~~~~~~~h-----~~~i~~~~~~~~-~~~las~s~dg~i~iwd~~~  429 (563)
                      .+.++....+..+..+..|-.|.+|.+.-..   .+...+.+     +.-|++..|+|. .++++-.|..|+||+-|++.
T Consensus       166 hiNSIS~NsD~Et~lSADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~  245 (433)
T KOG1354|consen  166 HINSISVNSDKETFLSADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQ  245 (433)
T ss_pred             EeeeeeecCccceEeeccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechh
Confidence            2333333344444444444444444442211   11122222     234788999996 46788888899999999985


Q ss_pred             Cceee----------------eecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeC-CCCeEEEEecCCC-
Q 008496          430 DKYVH----------------DLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDV-ELGKLLYSLNGHR-  491 (563)
Q Consensus       430 ~~~~~----------------~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~-~~~~~~~~~~~h~-  491 (563)
                      ....-                -|..--..|..+.|++.|.         ++++-+. -+|++||+ ...+++.+..-|. 
T Consensus       246 ~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGr---------yilsRDy-ltvk~wD~nme~~pv~t~~vh~~  315 (433)
T KOG1354|consen  246 SALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGR---------YILSRDY-LTVKLWDLNMEAKPVETYPVHEY  315 (433)
T ss_pred             hhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCc---------EEEEecc-ceeEEEeccccCCcceEEeehHh
Confidence            43211                0111224577889999886         6666543 68999998 3455555554442 


Q ss_pred             -----------CCE---EEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEE-E-------------------EecC-----
Q 008496          492 -----------EPV---YSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVK-T-------------------YTGN-----  532 (563)
Q Consensus       492 -----------~~i---~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~-~-------------------~~~~-----  532 (563)
                                 ..|   ..++||-++.+++|||....+++|++..|.... +                   ..++     
T Consensus       316 lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gsk~d~tl~asr~~~~~~~~~k~~~V~~~g~r~~~  395 (433)
T KOG1354|consen  316 LRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGSKEDFTLEASRKNMKPRKVLKLRLVSSSGKRKRD  395 (433)
T ss_pred             HHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCCcceeecccccccCCcccccccceeeecCCCcccc
Confidence                       233   458999999999999999999999976553110 0                   0000     


Q ss_pred             ----------CCEEEEEEcCCCCEEEEEECCCeEEEE
Q 008496          533 ----------GGIFEVCWNKEGDKIAACFANHTVCVL  559 (563)
Q Consensus       533 ----------~~i~~l~w~~~g~~la~~~~~~~v~v~  559 (563)
                                ..|+..+|+|..+.+|++..|. +.|+
T Consensus       396 ~~~vd~ldf~kkilh~aWhp~en~ia~aatnn-lyif  431 (433)
T KOG1354|consen  396 EISVDALDFRKKILHTAWHPKENSIAVAATNN-LYIF  431 (433)
T ss_pred             ccccchhhhhhHHHhhccCCccceeeeeecCc-eEEe
Confidence                      1245689999999999987763 4444

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.47  E-value=3.7e-11  Score=123.36  Aligned_cols=212  Identities=18%  Similarity=0.259  Sum_probs=136.0

Q ss_pred             CCeEEEEECCCCCEEEEEeCC---CeEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEEE-eeCCC--cEEEEECCCCc
Q 008496          275 KDVTTLDWNGEGTLLATGSYD---GQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLT-GSCDK--TAIVWDVKTEE  348 (563)
Q Consensus       275 ~~V~~l~~s~~g~~l~sg~~d---g~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s-~s~D~--~v~iwd~~~~~  348 (563)
                      ..+...+|+|||++|+.+...   ..|++|+..+.....+..+.+.+.+++|+|+|+.|+. .+.++  .|.+||+.++.
T Consensus       190 ~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~  269 (417)
T TIGR02800       190 EPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQ  269 (417)
T ss_pred             CceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCC
Confidence            357788999999999988754   4799999876544455556677788999999987764 44443  46666665543


Q ss_pred             eeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeC-CC--cEEEE
Q 008496          349 WKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD-DV--TAKIW  425 (563)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~-dg--~i~iw  425 (563)
                      ..                                          .+..+........|+|+|+.|+.++. ++  .|.+|
T Consensus       270 ~~------------------------------------------~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~  307 (417)
T TIGR02800       270 LT------------------------------------------RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMM  307 (417)
T ss_pred             EE------------------------------------------ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEE
Confidence            21                                          11122223345689999998877665 33  57777


Q ss_pred             eCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCC---eEEEEeCCCCeEEEEecCCCCCEEEEEEcCC
Q 008496          426 NMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDS---TVKLWDVELGKLLYSLNGHREPVYSLAFSPT  502 (563)
Q Consensus       426 d~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg---~i~iwd~~~~~~~~~~~~h~~~i~~l~~spd  502 (563)
                      ++.+++. ..+..+...+....|+|++.         +++.++.++   .|.+||+.++... .+... ......+|+||
T Consensus       308 d~~~~~~-~~l~~~~~~~~~~~~spdg~---------~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~~-~~~~~p~~spd  375 (417)
T TIGR02800       308 DADGGEV-RRLTFRGGYNASPSWSPDGD---------LIAFVHREGGGFNIAVMDLDGGGER-VLTDT-GLDESPSFAPN  375 (417)
T ss_pred             ECCCCCE-EEeecCCCCccCeEECCCCC---------EEEEEEccCCceEEEEEeCCCCCeE-EccCC-CCCCCceECCC
Confidence            8776653 33444555667889999875         455555554   7889998876542 23222 22355689999


Q ss_pred             CCEEEEEeCCC---cEEEEecCCCeeEEEEec-CCCEEEEEEc
Q 008496          503 GEYLASGSLDK---SMHIWSLKEGKIVKTYTG-NGGIFEVCWN  541 (563)
Q Consensus       503 g~~lasgs~dg---~v~iw~~~~~~~~~~~~~-~~~i~~l~w~  541 (563)
                      |++|+.++.++   .+.+.+. +|+....+.. .+.+..++|+
T Consensus       376 g~~l~~~~~~~~~~~l~~~~~-~g~~~~~~~~~~g~~~~~~ws  417 (417)
T TIGR02800       376 GRMILYATTRGGRGVLGLVST-DGRFRARLPLGNGDVREPAWS  417 (417)
T ss_pred             CCEEEEEEeCCCcEEEEEEEC-CCceeeECCCCCCCcCCCCCC
Confidence            99998777654   4555554 3444444432 3445566664

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.46  E-value=5.7e-11  Score=122.25  Aligned_cols=204  Identities=16%  Similarity=0.174  Sum_probs=133.2

Q ss_pred             eEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEEEeeCC---CcEEEEECCCCceeEEeeecccCeEEEecCCCceEEE
Q 008496          297 QARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCD---KTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFAT  373 (563)
Q Consensus       297 ~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D---~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (563)
                      .|.++|.+|.....+..+..++...+|+|+|++|+..+.+   ..|.+||+.+++...                      
T Consensus       180 ~l~~~d~~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~----------------------  237 (430)
T PRK00178        180 TLQRSDYDGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ----------------------  237 (430)
T ss_pred             EEEEECCCCCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE----------------------
Confidence            4777788777666666778889999999999998876543   247777776654221                      


Q ss_pred             EeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEE-EEeCCC--cEEEEeCCCCceeeeecccCCCEEEEEEcc
Q 008496          374 SSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLA-SCSDDV--TAKIWNMKQDKYVHDLREHSKEIYTIRWSP  450 (563)
Q Consensus       374 ~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~la-s~s~dg--~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p  450 (563)
                                          +....+.+...+|+|||+.|+ +.+.+|  .|.+||+.++... .+..+........|+|
T Consensus       238 --------------------l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~sp  296 (430)
T PRK00178        238 --------------------ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGK  296 (430)
T ss_pred             --------------------ccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECC
Confidence                                111112234688999999876 455555  5778898877643 3555555566788999


Q ss_pred             CCCCCCCCCCcEEEEEEeCCC--eEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCC-C--cEEEEecCCCee
Q 008496          451 TGSGTNNPNQQLILASASFDS--TVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLD-K--SMHIWSLKEGKI  525 (563)
Q Consensus       451 ~~~~~~~~~~~~~l~s~s~dg--~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~d-g--~v~iw~~~~~~~  525 (563)
                      ++.        .++.+...+|  .|.++|+.+++... +..........+|||||++|+..+.+ +  .|.+||+.+++.
T Consensus       297 Dg~--------~i~f~s~~~g~~~iy~~d~~~g~~~~-lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~  367 (430)
T PRK00178        297 DGR--------TLYFTSDRGGKPQIYKVNVNGGRAER-VTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSV  367 (430)
T ss_pred             CCC--------EEEEEECCCCCceEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCE
Confidence            875        2444443443  57777887776432 22112233457899999999876643 3  588899988764


Q ss_pred             EEEEecCCCEEEEEEcCCCCEEEEEECC
Q 008496          526 VKTYTGNGGIFEVCWNKEGDKIAACFAN  553 (563)
Q Consensus       526 ~~~~~~~~~i~~l~w~~~g~~la~~~~~  553 (563)
                      .. +.........+|+|||+.|+.+...
T Consensus       368 ~~-lt~~~~~~~p~~spdg~~i~~~~~~  394 (430)
T PRK00178        368 RI-LTDTSLDESPSVAPNGTMLIYATRQ  394 (430)
T ss_pred             EE-ccCCCCCCCceECCCCCEEEEEEec
Confidence            33 3222223356899999999887543

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.45  E-value=3.3e-11  Score=117.35  Aligned_cols=279  Identities=17%  Similarity=0.232  Sum_probs=194.4

Q ss_pred             CCCceEEEEECCCCCE-EEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEE
Q 008496          214 HTSEVCACAWSPAGSL-LASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATG  292 (563)
Q Consensus       214 h~~~V~~~~~sp~~~~-latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg  292 (563)
                      |....+.+..+|||++ ||||..--.|++||+.+-.              ++. ..+..  ...|...-.+-|-..++.-
T Consensus        50 ~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLS--------------LKF-ERhlD--ae~V~feiLsDD~SK~v~L  112 (703)
T KOG2321|consen   50 MPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLS--------------LKF-ERHLD--AEVVDFEILSDDYSKSVFL  112 (703)
T ss_pred             CccccceeEecCCCcEEEEecccCCceEEEEcccce--------------eee-eeccc--ccceeEEEeccchhhheEe
Confidence            4445677889999985 6778788999999986521              111 11111  2334444455555555555


Q ss_pred             eCCCeEEEEEcCCceeE-eeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecCCCce-
Q 008496          293 SYDGQARIWSTNGDLKC-TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVS-  370 (563)
Q Consensus       293 ~~dg~i~vw~~~~~~~~-~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-  370 (563)
                      -.|..|-+-...|.-.. .++   ..-..++++.-.--|+.++....|.-.++..|.+++.|....+.+..+....-.. 
T Consensus       113 ~~DR~IefHak~G~hy~~RIP---~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgL  189 (703)
T KOG2321|consen  113 QNDRTIEFHAKYGRHYRTRIP---KFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGL  189 (703)
T ss_pred             ecCceeeehhhcCeeeeeecC---cCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccce
Confidence            66777766654443221 111   2224455554343455566666788889999999999988888877777665544 


Q ss_pred             EEEEeCCCeEEEEEcCCCcceeeec------CCCc-----ceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeccc
Q 008496          371 FATSSTDNMIYVCKIGENRPIKTFA------GHQG-----EVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREH  439 (563)
Q Consensus       371 ~~~~~~d~~i~~~~~~~~~~~~~~~------~h~~-----~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~  439 (563)
                      +++++.+|.|-.||.+....+.++.      .|.+     .|+++.|+.+|-.+++|+.+|.+.|||+++.+++.. +.|
T Consensus       190 la~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~-kdh  268 (703)
T KOG2321|consen  190 LACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLV-KDH  268 (703)
T ss_pred             EEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceee-ccc
Confidence            4555669999999988766555443      2333     499999999999999999999999999999887643 334


Q ss_pred             --CCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEE
Q 008496          440 --SKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHI  517 (563)
Q Consensus       440 --~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~i  517 (563)
                        .-+|..+.|.+.+.       +..++|. ....++|||-.+|+....+.. ...++.+++-|++.++++|-.++.+..
T Consensus       269 ~~e~pi~~l~~~~~~~-------q~~v~S~-Dk~~~kiWd~~~Gk~~asiEp-t~~lND~C~~p~sGm~f~Ane~~~m~~  339 (703)
T KOG2321|consen  269 GYELPIKKLDWQDTDQ-------QNKVVSM-DKRILKIWDECTGKPMASIEP-TSDLNDFCFVPGSGMFFTANESSKMHT  339 (703)
T ss_pred             CCccceeeecccccCC-------CceEEec-chHHhhhcccccCCceeeccc-cCCcCceeeecCCceEEEecCCCccee
Confidence              45788999987632       2245544 346799999999998877764 445999999999999999999988877


Q ss_pred             EecCC
Q 008496          518 WSLKE  522 (563)
Q Consensus       518 w~~~~  522 (563)
                      |=+..
T Consensus       340 yyiP~  344 (703)
T KOG2321|consen  340 YYIPS  344 (703)
T ss_pred             EEccc
Confidence            76653

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.41  E-value=1.2e-10  Score=119.54  Aligned_cols=204  Identities=17%  Similarity=0.210  Sum_probs=129.8

Q ss_pred             eEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEEEeeCC-C--cEEEEECCCCceeEEeeecccCeEEEecCCCceEEE
Q 008496          297 QARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCD-K--TAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFAT  373 (563)
Q Consensus       297 ~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D-~--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (563)
                      .+.++|.+|.....+..+..++.+..|+|+|++|+..+.+ +  .|.+||+.+++...                      
T Consensus       199 ~l~i~d~dG~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~----------------------  256 (448)
T PRK04792        199 QLMIADYDGYNEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK----------------------  256 (448)
T ss_pred             EEEEEeCCCCCceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE----------------------
Confidence            6677788776556666778889999999999998876543 2  46677776553211                      


Q ss_pred             EeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEE-EeCCCc--EEEEeCCCCceeeeecccCCCEEEEEEcc
Q 008496          374 SSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLAS-CSDDVT--AKIWNMKQDKYVHDLREHSKEIYTIRWSP  450 (563)
Q Consensus       374 ~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las-~s~dg~--i~iwd~~~~~~~~~~~~~~~~i~~~~~~p  450 (563)
                                       +..+.+   .....+|+|||+.|+. .+.++.  |.+||+.++.. ..+..+........|+|
T Consensus       257 -----------------lt~~~g---~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~-~~lt~~~~~~~~p~wSp  315 (448)
T PRK04792        257 -----------------VTSFPG---INGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKAL-TRITRHRAIDTEPSWHP  315 (448)
T ss_pred             -----------------ecCCCC---CcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCe-EECccCCCCccceEECC
Confidence                             111111   2235789999997764 566665  66778877654 34444555567789999


Q ss_pred             CCCCCCCCCCcEEEEEEeCCC--eEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeC-CC--cEEEEecCCCee
Q 008496          451 TGSGTNNPNQQLILASASFDS--TVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSL-DK--SMHIWSLKEGKI  525 (563)
Q Consensus       451 ~~~~~~~~~~~~~l~s~s~dg--~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~-dg--~v~iw~~~~~~~  525 (563)
                      ++.        .++.+...++  .|.++|+.+++... +..........+|+|||++|+..+. ++  .|.++|+.+++.
T Consensus       316 DG~--------~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~  386 (448)
T PRK04792        316 DGK--------SLIFTSERGGKPQIYRVNLASGKVSR-LTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAM  386 (448)
T ss_pred             CCC--------EEEEEECCCCCceEEEEECCCCCEEE-EecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCe
Confidence            875        2444444444  46666777666432 2212222345799999999887654 34  456678877764


Q ss_pred             EEEEecCCCEEEEEEcCCCCEEEEEECC
Q 008496          526 VKTYTGNGGIFEVCWNKEGDKIAACFAN  553 (563)
Q Consensus       526 ~~~~~~~~~i~~l~w~~~g~~la~~~~~  553 (563)
                      .. +.........+|+|+|+.|+....+
T Consensus       387 ~~-lt~~~~d~~ps~spdG~~I~~~~~~  413 (448)
T PRK04792        387 QV-LTSTRLDESPSVAPNGTMVIYSTTY  413 (448)
T ss_pred             EE-ccCCCCCCCceECCCCCEEEEEEec
Confidence            33 2222222356899999999876554

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.41  E-value=6.2e-11  Score=116.35  Aligned_cols=188  Identities=20%  Similarity=0.382  Sum_probs=152.6

Q ss_pred             CCCCCEEEEeeCCCcEEEEECCCCceeEEeeecc---cCeEEEecC---------------------CCceEEEEeCCCe
Q 008496          324 NKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHS---GPTLDVDWR---------------------NNVSFATSSTDNM  379 (563)
Q Consensus       324 ~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~---~~~~~~~~~---------------------~~~~~~~~~~d~~  379 (563)
                      .|...|++....||.+++||..+++..+.|....   +.-.+..|.                     +...++.+...|.
T Consensus         2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~   81 (541)
T KOG4547|consen    2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS   81 (541)
T ss_pred             CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence            3456789999999999999998888777664322   122223331                     2235677888999


Q ss_pred             EEEEEcCCCcceeeec--CCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCC
Q 008496          380 IYVCKIGENRPIKTFA--GHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNN  457 (563)
Q Consensus       380 i~~~~~~~~~~~~~~~--~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~  457 (563)
                      |.++++..+.....+.  +|.+.|+++.++.+-..|.|++.|+.+..|+....+.++.+......+.+++.+|++.    
T Consensus        82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~----  157 (541)
T KOG4547|consen   82 VLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGK----  157 (541)
T ss_pred             EEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCC----
Confidence            9999998887666665  6889999999999999999999999999999999998888888888899999999975    


Q ss_pred             CCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCC-----CCEE-EEEeCCCcEEEEecCC
Q 008496          458 PNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPT-----GEYL-ASGSLDKSMHIWSLKE  522 (563)
Q Consensus       458 ~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spd-----g~~l-asgs~dg~v~iw~~~~  522 (563)
                           +|++||  +.|++||+++++.+..+.||.++|.+++|--+     |.++ .++..+.-+.+|-+..
T Consensus       158 -----~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  158 -----ILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             -----EEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence                 677776  68999999999999999999999999999876     5554 5556677788898754

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.41  E-value=2.6e-10  Score=116.08  Aligned_cols=240  Identities=16%  Similarity=0.178  Sum_probs=149.7

Q ss_pred             CeEEEEEcCCceeEeeccCCCCEEEEEeCCCCCE--E-EEeeCCC--cEEEEECCCCceeEEeeecccCeEEEecCCCc-
Q 008496          296 GQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDY--L-LTGSCDK--TAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNV-  369 (563)
Q Consensus       296 g~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~--l-~s~s~D~--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-  369 (563)
                      ..|.+.|.+|.....+......+.+-+|+|+|+.  + ++...++  .|.+.++.+++..+... ..+......|.++. 
T Consensus       165 ~~l~~~d~dG~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~-~~g~~~~p~wSPDG~  243 (428)
T PRK01029        165 GELWSVDYDGQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILA-LQGNQLMPTFSPRKK  243 (428)
T ss_pred             ceEEEEcCCCCCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeec-CCCCccceEECCCCC
Confidence            4677777777666666666667788899999975  2 2444444  57777888776444322 23334456776654 


Q ss_pred             eEEEEe-CCC--eEE--EEEcCC---CcceeeecCCCcceeEEEECCCCCEEEEEe-CCCcEEEEeC--CC-Cceeeeec
Q 008496          370 SFATSS-TDN--MIY--VCKIGE---NRPIKTFAGHQGEVNCVKWDPTGSLLASCS-DDVTAKIWNM--KQ-DKYVHDLR  437 (563)
Q Consensus       370 ~~~~~~-~d~--~i~--~~~~~~---~~~~~~~~~h~~~i~~~~~~~~~~~las~s-~dg~i~iwd~--~~-~~~~~~~~  437 (563)
                      .++..+ .++  .++  .|++..   +.+.....++.+.....+|+|||+.|+..+ .+|...||.+  .. +.....+.
T Consensus       244 ~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt  323 (428)
T PRK01029        244 LLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLT  323 (428)
T ss_pred             EEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEec
Confidence            444332 122  233  355543   233333333334456789999999887666 4676666653  32 22234444


Q ss_pred             ccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCC--CeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeC---C
Q 008496          438 EHSKEIYTIRWSPTGSGTNNPNQQLILASASFD--STVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSL---D  512 (563)
Q Consensus       438 ~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~d--g~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~---d  512 (563)
                      .+...+....|+|+|.        .++.++..+  ..|.+||+.+++.. .+......+....|+|||++|+..+.   .
T Consensus       324 ~~~~~~~~p~wSPDG~--------~Laf~~~~~g~~~I~v~dl~~g~~~-~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~  394 (428)
T PRK01029        324 KKYRNSSCPAWSPDGK--------KIAFCSVIKGVRQICVYDLATGRDY-QLTTSPENKESPSWAIDSLHLVYSAGNSNE  394 (428)
T ss_pred             cCCCCccceeECCCCC--------EEEEEEcCCCCcEEEEEECCCCCeE-EccCCCCCccceEECCCCCEEEEEECCCCC
Confidence            4555677889999986        233333332  46999999888764 33333345678999999998875432   3


Q ss_pred             CcEEEEecCCCeeEEEEecCCCEEEEEEcCCCC
Q 008496          513 KSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGD  545 (563)
Q Consensus       513 g~v~iw~~~~~~~~~~~~~~~~i~~l~w~~~g~  545 (563)
                      ..|.+|++..++........+.+...+|+|-..
T Consensus       395 ~~L~~vdl~~g~~~~Lt~~~g~~~~p~Ws~~~~  427 (428)
T PRK01029        395 SELYLISLITKKTRKIVIGSGEKRFPSWGAFPS  427 (428)
T ss_pred             ceEEEEECCCCCEEEeecCCCcccCceecCCCC
Confidence            568899998887666655666677899998653

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.40  E-value=1.2e-10  Score=119.76  Aligned_cols=215  Identities=17%  Similarity=0.203  Sum_probs=132.8

Q ss_pred             CCeEEEEECCCCCEEEEEeCC---CeEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEE-EeeCCC--cEEEEECCCCc
Q 008496          275 KDVTTLDWNGEGTLLATGSYD---GQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLL-TGSCDK--TAIVWDVKTEE  348 (563)
Q Consensus       275 ~~V~~l~~s~~g~~l~sg~~d---g~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~-s~s~D~--~v~iwd~~~~~  348 (563)
                      ..+....|+|||+.|+..+.+   ..|.+|+..+.....+....+.+....|+|+|+.|+ +.+.++  .|.+||+.++.
T Consensus       199 ~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~  278 (430)
T PRK00178        199 EPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQ  278 (430)
T ss_pred             CceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCC
Confidence            457889999999999877654   368888987655445554555566789999999886 444444  45566665543


Q ss_pred             eeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeC-CC--cEEEE
Q 008496          349 WKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD-DV--TAKIW  425 (563)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~-dg--~i~iw  425 (563)
                      ..                                          .+..+........|+|||+.|+..++ ++  .|.++
T Consensus       279 ~~------------------------------------------~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~  316 (430)
T PRK00178        279 LS------------------------------------------RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKV  316 (430)
T ss_pred             eE------------------------------------------EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEE
Confidence            21                                          11222333456789999998776664 33  46667


Q ss_pred             eCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCC--eEEEEeCCCCeEEEEecCCCCCEEEEEEcCCC
Q 008496          426 NMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDS--TVKLWDVELGKLLYSLNGHREPVYSLAFSPTG  503 (563)
Q Consensus       426 d~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg--~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg  503 (563)
                      ++.+++.. .+...........|+|++.        .++.+...++  .|.+||+.+++.. .+.. ........|||||
T Consensus       317 d~~~g~~~-~lt~~~~~~~~~~~Spdg~--------~i~~~~~~~~~~~l~~~dl~tg~~~-~lt~-~~~~~~p~~spdg  385 (430)
T PRK00178        317 NVNGGRAE-RVTFVGNYNARPRLSADGK--------TLVMVHRQDGNFHVAAQDLQRGSVR-ILTD-TSLDESPSVAPNG  385 (430)
T ss_pred             ECCCCCEE-EeecCCCCccceEECCCCC--------EEEEEEccCCceEEEEEECCCCCEE-EccC-CCCCCCceECCCC
Confidence            77666532 2222222334568888875        2333333333  5888999877643 2321 1222356899999


Q ss_pred             CEEEEEeCC---CcEEEEecCCCeeEEEEec-CCCEEEEEEcCC
Q 008496          504 EYLASGSLD---KSMHIWSLKEGKIVKTYTG-NGGIFEVCWNKE  543 (563)
Q Consensus       504 ~~lasgs~d---g~v~iw~~~~~~~~~~~~~-~~~i~~l~w~~~  543 (563)
                      ++|+..+.+   ..|.++++. |.....+.. .+.+...+|+|-
T Consensus       386 ~~i~~~~~~~g~~~l~~~~~~-g~~~~~l~~~~g~~~~p~ws~~  428 (430)
T PRK00178        386 TMLIYATRQQGRGVLMLVSIN-GRVRLPLPTAQGEVREPSWSPY  428 (430)
T ss_pred             CEEEEEEecCCceEEEEEECC-CCceEECcCCCCCcCCCccCCC
Confidence            999876643   346777774 333333333 345678889874

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.40  E-value=1.9e-10  Score=111.82  Aligned_cols=314  Identities=16%  Similarity=0.305  Sum_probs=188.3

Q ss_pred             EEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEEeCC---
Q 008496          219 CACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYD---  295 (563)
Q Consensus       219 ~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~d---  295 (563)
                      +-+.|||-|++|+|--.-| |.+|-=.+   -..          +.      .-....|..++|||..+||+|=+..   
T Consensus       214 tyv~wSP~GTYL~t~Hk~G-I~lWGG~~---f~r----------~~------RF~Hp~Vq~idfSP~EkYLVT~s~~p~~  273 (698)
T KOG2314|consen  214 TYVRWSPKGTYLVTFHKQG-IALWGGES---FDR----------IQ------RFYHPGVQFIDFSPNEKYLVTYSPEPII  273 (698)
T ss_pred             eeEEecCCceEEEEEeccc-eeeecCcc---HHH----------HH------hccCCCceeeecCCccceEEEecCCccc
Confidence            4588999999999986655 66784211   000          00      0113458899999999999987652   


Q ss_pred             --------CeEEEEEcC-CceeEeecc--CCCCEEE-EEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEE
Q 008496          296 --------GQARIWSTN-GDLKCTLSK--HKGPIFS-LKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDV  363 (563)
Q Consensus       296 --------g~i~vw~~~-~~~~~~~~~--h~~~V~~-l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~  363 (563)
                              ..++|||.. |.++..+..  ...+++. .+||.+++|++.-.. .+|.||+.....+...-...-..+.++
T Consensus       274 ~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Kslki~gIr~F  352 (698)
T KOG2314|consen  274 VEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKSLKISGIRDF  352 (698)
T ss_pred             cCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeecccccCCccccCc
Confidence                    478999965 666666655  2333433 589999999987665 578888865543332222222345556


Q ss_pred             ecCCCceEEE---EeCCC---eEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEe----------CCCcEEEEeC
Q 008496          364 DWRNNVSFAT---SSTDN---MIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCS----------DDVTAKIWNM  427 (563)
Q Consensus       364 ~~~~~~~~~~---~~~d~---~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s----------~dg~i~iwd~  427 (563)
                      .|.+...+++   ...++   .+.+..+...+.+++-.-|+-.=..+-|-.+|.+|+.--          .-..+.|+.+
T Consensus       353 swsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfri  432 (698)
T KOG2314|consen  353 SWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRI  432 (698)
T ss_pred             ccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEe
Confidence            6655432221   11111   234444444444443333322223456666777765321          1123556666


Q ss_pred             CCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeC-CCeEEEEeCCC-C---eEEEEecCCCCCEEEEEEcCC
Q 008496          428 KQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASF-DSTVKLWDVEL-G---KLLYSLNGHREPVYSLAFSPT  502 (563)
Q Consensus       428 ~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~-dg~i~iwd~~~-~---~~~~~~~~h~~~i~~l~~spd  502 (563)
                      +..........-...|...+|-|.|.       ...+++|-. -.++.+|-+++ +   +++..+.  ....+.+.|||-
T Consensus       433 reKdIpve~velke~vi~FaWEP~gd-------kF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~d--k~~~N~vfwsPk  503 (698)
T KOG2314|consen  433 REKDIPVEVVELKESVIAFAWEPHGD-------KFAVISGNTVKNTVSFYAVETNIKKPSLVKELD--KKFANTVFWSPK  503 (698)
T ss_pred             eccCCCceeeecchheeeeeeccCCC-------eEEEEEccccccceeEEEeecCCCchhhhhhhc--ccccceEEEcCC
Confidence            55443222333456788999999885       233444432 35788887763 2   2233333  245688999999


Q ss_pred             CCEEEEE---eCCCcEEEEecCCCeeEEE-EecCCCEEEEEEcCCCCEEEEEECCCe------EEEEEee
Q 008496          503 GEYLASG---SLDKSMHIWSLKEGKIVKT-YTGNGGIFEVCWNKEGDKIAACFANHT------VCVLDFR  562 (563)
Q Consensus       503 g~~lasg---s~dg~v~iw~~~~~~~~~~-~~~~~~i~~l~w~~~g~~la~~~~~~~------v~v~~~~  562 (563)
                      |++++.+   |..|.+.++|+....+..+ ...+...+.+.|+|.|+++.+|++...      -.+|+|+
T Consensus       504 G~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfq  573 (698)
T KOG2314|consen  504 GRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQ  573 (698)
T ss_pred             CcEEEEEEecccccceEEEecchhhhhhccCccccccccceECCCCCEEEEeeehhhhccccceEEEEee
Confidence            9999875   4578899999874332222 123445678999999999999977543      3556654

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.39  E-value=1.2e-10  Score=113.55  Aligned_cols=293  Identities=17%  Similarity=0.327  Sum_probs=183.4

Q ss_pred             ceEEEEECCCCCEEEEe-----eCCCc-----EEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCC
Q 008496          217 EVCACAWSPAGSLLASG-----SGDST-----ARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG  286 (563)
Q Consensus       217 ~V~~~~~sp~~~~latg-----s~D~~-----i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g  286 (563)
                      .++++-|||-|.+|.|-     ..|++     +++|++.++....                 ........-++..|+.|.
T Consensus        75 ~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s-----------------~~q~k~Q~~W~~qfs~dE  137 (566)
T KOG2315|consen   75 KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRS-----------------QIQKKMQNGWVPQFSIDE  137 (566)
T ss_pred             eeeeeeecccccccccccccccccCCCCCCCceeeeeeccceehh-----------------heehhhhcCcccccccch
Confidence            67889999999998762     12332     4467665421100                 000001111577888886


Q ss_pred             CEEEEEeCCCeEEEEEcCCceeEeeccCCCCEEEEEeCCCC--CEEEE-----eeCCCcEEEEECCCCceeEE---eeec
Q 008496          287 TLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKG--DYLLT-----GSCDKTAIVWDVKTEEWKQQ---FEFH  356 (563)
Q Consensus       287 ~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~--~~l~s-----~s~D~~v~iwd~~~~~~~~~---~~~~  356 (563)
                      .+. .--..+.+.+|+..+.....-.-|...|+.+.++|.+  ..+++     .+.-..|+||-..-....+.   -.+.
T Consensus       138 sl~-arlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFF  216 (566)
T KOG2315|consen  138 SLA-ARLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFF  216 (566)
T ss_pred             hhh-hhhhcceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhcccc
Confidence            543 3334578999998774444444567788899999874  23332     45566899997652221111   1111


Q ss_pred             ccCeEEEecCCC--ceEE--EEeC---------CCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEe--CCCc
Q 008496          357 SGPTLDVDWRNN--VSFA--TSST---------DNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCS--DDVT  421 (563)
Q Consensus       357 ~~~~~~~~~~~~--~~~~--~~~~---------d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s--~dg~  421 (563)
                      ...-..+.|...  ..++  +..-         ..++++..+........+. ..++|.++.|+|+++-++.+.  .--+
T Consensus       217 kadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~-k~GPVhdv~W~~s~~EF~VvyGfMPAk  295 (566)
T KOG2315|consen  217 KADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL-KEGPVHDVTWSPSGREFAVVYGFMPAK  295 (566)
T ss_pred             ccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC-CCCCceEEEECCCCCEEEEEEecccce
Confidence            222344556422  2222  2222         2356777766444333332 478999999999998876654  4567


Q ss_pred             EEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeC---CCeEEEEeCCCCeEEEEecCCCCCEEEEE
Q 008496          422 AKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASF---DSTVKLWDVELGKLLYSLNGHREPVYSLA  498 (563)
Q Consensus       422 i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~---dg~i~iwd~~~~~~~~~~~~h~~~i~~l~  498 (563)
                      +.|+|++- .++..+  ..++-.++-|+|.|.         +|+.+++   -|.|-|||+.+.+++..+..-.  -+-..
T Consensus       296 vtifnlr~-~~v~df--~egpRN~~~fnp~g~---------ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~--tt~~e  361 (566)
T KOG2315|consen  296 VTIFNLRG-KPVFDF--PEGPRNTAFFNPHGN---------IILLAGFGNLPGDMEVWDVPNRKLIAKFKAAN--TTVFE  361 (566)
T ss_pred             EEEEcCCC-CEeEeC--CCCCccceEECCCCC---------EEEEeecCCCCCceEEEeccchhhccccccCC--ceEEE
Confidence            88999763 455544  456778899999885         4555554   3789999999988888776543  35678


Q ss_pred             EcCCCCEEEEEeC------CCcEEEEecCCCeeEEEEecCCCEEEEEEcCC
Q 008496          499 FSPTGEYLASGSL------DKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKE  543 (563)
Q Consensus       499 ~spdg~~lasgs~------dg~v~iw~~~~~~~~~~~~~~~~i~~l~w~~~  543 (563)
                      |+|||.+++|++.      |+.++||+. +|+++....-....+.++|-|-
T Consensus       362 W~PdGe~flTATTaPRlrvdNg~Kiwhy-tG~~l~~~~f~sEL~qv~W~P~  411 (566)
T KOG2315|consen  362 WSPDGEYFLTATTAPRLRVDNGIKIWHY-TGSLLHEKMFKSELLQVEWRPF  411 (566)
T ss_pred             EcCCCcEEEEEeccccEEecCCeEEEEe-cCceeehhhhhHhHhheeeeec
Confidence            9999999998875      678999998 4666654433335778888864

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.39  E-value=8.2e-11  Score=109.72  Aligned_cols=238  Identities=17%  Similarity=0.271  Sum_probs=164.7

Q ss_pred             CCEEEEEeCCCC--CEEEEeeCCCcEEEEECCCCceeEEe------eecccCeEEEecCCCceEEEEeCCCeEEEEEcCC
Q 008496          316 GPIFSLKWNKKG--DYLLTGSCDKTAIVWDVKTEEWKQQF------EFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGE  387 (563)
Q Consensus       316 ~~V~~l~~~~~~--~~l~s~s~D~~v~iwd~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~  387 (563)
                      ..|.++.|..++  ..|+.++.|..+.........+....      .+...++..+.. .+..+++|-.+|.+.+|....
T Consensus        56 ~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~-~dg~Litc~~sG~l~~~~~k~  134 (412)
T KOG3881|consen   56 DRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKL-ADGTLITCVSSGNLQVRHDKS  134 (412)
T ss_pred             hhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhh-cCCEEEEEecCCcEEEEeccC
Confidence            345666665444  33555556666666655544433322      122223333322 345677888899999998862


Q ss_pred             C----cceeeecCCCcceeEEEECCCCC-EEEEEeCC--CcEEEEeCCCCceeeeecccC---------CCEEEEEEccC
Q 008496          388 N----RPIKTFAGHQGEVNCVKWDPTGS-LLASCSDD--VTAKIWNMKQDKYVHDLREHS---------KEIYTIRWSPT  451 (563)
Q Consensus       388 ~----~~~~~~~~h~~~i~~~~~~~~~~-~las~s~d--g~i~iwd~~~~~~~~~~~~~~---------~~i~~~~~~p~  451 (563)
                      +    .+...+..+ ..+..+.-++..+ ++|+|+..  ..++|||+.+.+.+.+-+.-.         -.++.+.|-|.
T Consensus       135 ~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g  213 (412)
T KOG3881|consen  135 GDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEG  213 (412)
T ss_pred             CccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCC
Confidence            2    223333333 2344455555444 56679998  889999998886554332211         23566677664


Q ss_pred             CCCCCCCCCcEEEEEEeCCCeEEEEeCCCCe-EEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEE-E
Q 008496          452 GSGTNNPNQQLILASASFDSTVKLWDVELGK-LLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKT-Y  529 (563)
Q Consensus       452 ~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~-~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~-~  529 (563)
                      ..       +..+|++..-+.||+||.+.++ ++..+.--..+|+++...|+|++|.+|..-|.+..||.+.++++.. +
T Consensus       214 ~~-------~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~  286 (412)
T KOG3881|consen  214 SP-------NYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGL  286 (412)
T ss_pred             CC-------CceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeecccc
Confidence            22       2468999999999999999764 5666766678999999999999999999999999999999998766 5


Q ss_pred             ec-CCCEEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496          530 TG-NGGIFEVCWNKEGDKIAACFANHTVCVLDFR  562 (563)
Q Consensus       530 ~~-~~~i~~l~w~~~g~~la~~~~~~~v~v~~~~  562 (563)
                      .+ .++|.++--+|.+..||.|+-|..|+|+|++
T Consensus       287 kg~tGsirsih~hp~~~~las~GLDRyvRIhD~k  320 (412)
T KOG3881|consen  287 KGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIK  320 (412)
T ss_pred             CCccCCcceEEEcCCCceEEeeccceeEEEeecc
Confidence            54 5678999999999999999999999999986

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.38  E-value=9.2e-10  Score=109.21  Aligned_cols=267  Identities=16%  Similarity=0.177  Sum_probs=169.7

Q ss_pred             CEE-EEEeCCCeEEEEEcCC-ceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEe
Q 008496          287 TLL-ATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVD  364 (563)
Q Consensus       287 ~~l-~sg~~dg~i~vw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~  364 (563)
                      +++ ++-..+|.|.+.|... +....+......-..+.|+|+|+++++++.|+.|.++|+.+.+.+.++.....+ ..+.
T Consensus         6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~-~~i~   84 (369)
T PF02239_consen    6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNP-RGIA   84 (369)
T ss_dssp             GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEE-EEEE
T ss_pred             cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCc-ceEE
Confidence            344 4555679999999764 455666654444456789999999999999999999999999988887664443 3444


Q ss_pred             cCC--CceEEEEeCCCeEEEEEcCCCcceeeecCC-------CcceeEEEECCCCCEEEEEeC-CCcEEEEeCCCCceee
Q 008496          365 WRN--NVSFATSSTDNMIYVCKIGENRPIKTFAGH-------QGEVNCVKWDPTGSLLASCSD-DVTAKIWNMKQDKYVH  434 (563)
Q Consensus       365 ~~~--~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h-------~~~i~~~~~~~~~~~las~s~-dg~i~iwd~~~~~~~~  434 (563)
                      ...  ...++++...+.+.++|..+.++++.+...       ...+.++..+|....++..-. .+.|.+-|......+.
T Consensus        85 ~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~  164 (369)
T PF02239_consen   85 VSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLK  164 (369)
T ss_dssp             E--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEE
T ss_pred             EcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccc
Confidence            433  344556678899999999998888876532       345778888888885555544 5777777876554332


Q ss_pred             -eecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEec----CCCCCEEEE-------EEc--
Q 008496          435 -DLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLN----GHREPVYSL-------AFS--  500 (563)
Q Consensus       435 -~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~----~h~~~i~~l-------~~s--  500 (563)
                       .............|.|+++        +++++....+.|-++|..+++.+..+.    .|..++..+       .|.  
T Consensus       165 ~~~i~~g~~~~D~~~dpdgr--------y~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~  236 (369)
T PF02239_consen  165 VTTIKVGRFPHDGGFDPDGR--------YFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATS  236 (369)
T ss_dssp             EEEEE--TTEEEEEE-TTSS--------EEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEE
T ss_pred             eeeecccccccccccCcccc--------eeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeec
Confidence             2222344567788988875        466667778899999999998876653    243444332       232  


Q ss_pred             CCCCEEEEEeCCCcEEEEecCCCeeEEEEecCCCEEEEEEcCCCCEEEEE----ECCCeEEEEEee
Q 008496          501 PTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAAC----FANHTVCVLDFR  562 (563)
Q Consensus       501 pdg~~lasgs~dg~v~iw~~~~~~~~~~~~~~~~i~~l~w~~~g~~la~~----~~~~~v~v~~~~  562 (563)
                      ..+.+.++.-....+.+|+..+++.++++...++-.-+.-+|++++|.+.    -...+|+|+|.+
T Consensus       237 ~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~  302 (369)
T PF02239_consen  237 GLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKK  302 (369)
T ss_dssp             BSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECC
T ss_pred             cccceecccccCCccccchhhcCeEEEEEECCCCcceeecCCCCccEEeeccCCCCCceEEEEECc
Confidence            22334323222345778999999999999876655888899999999998    334789999865

...

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.34  E-value=3.5e-08  Score=98.07  Aligned_cols=265  Identities=15%  Similarity=0.249  Sum_probs=163.6

Q ss_pred             EEEEeCC----CeEEEEEcC---Ccee--EeeccCCCCEEEEEeCCCCCEEEEeeC----CCcEEEEECCCC--ce--eE
Q 008496          289 LATGSYD----GQARIWSTN---GDLK--CTLSKHKGPIFSLKWNKKGDYLLTGSC----DKTAIVWDVKTE--EW--KQ  351 (563)
Q Consensus       289 l~sg~~d----g~i~vw~~~---~~~~--~~~~~h~~~V~~l~~~~~~~~l~s~s~----D~~v~iwd~~~~--~~--~~  351 (563)
                      +++|+++    +.|.+|..+   +.+.  .... -......|+++|++++|++...    ++.|..|.+...  .+  +.
T Consensus         2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~-~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~   80 (345)
T PF10282_consen    2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVA-EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLN   80 (345)
T ss_dssp             EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEE-ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEE
T ss_pred             EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeec-CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEee
Confidence            4556665    678888762   2221  1222 2234456889999999998876    468888887653  33  22


Q ss_pred             EeeecccCeEEEecC--CCceEEEEeCCCeEEEEEcCCCccee----eec----------CCCcceeEEEECCCCCEEEE
Q 008496          352 QFEFHSGPTLDVDWR--NNVSFATSSTDNMIYVCKIGENRPIK----TFA----------GHQGEVNCVKWDPTGSLLAS  415 (563)
Q Consensus       352 ~~~~~~~~~~~~~~~--~~~~~~~~~~d~~i~~~~~~~~~~~~----~~~----------~h~~~i~~~~~~~~~~~las  415 (563)
                      ...........+...  ....+++.-.++.+.++++.....+.    .+.          .-.....++.++|+++++++
T Consensus        81 ~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v  160 (345)
T PF10282_consen   81 SVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYV  160 (345)
T ss_dssp             EEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEE
T ss_pred             eeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEE
Confidence            333223333344443  33345555678999999998743221    111          11234678999999998877


Q ss_pred             EeC-CCcEEEEeCCCCc--ee--eeec-ccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCC--CCeE--EE
Q 008496          416 CSD-DVTAKIWNMKQDK--YV--HDLR-EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVE--LGKL--LY  485 (563)
Q Consensus       416 ~s~-dg~i~iwd~~~~~--~~--~~~~-~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~--~~~~--~~  485 (563)
                      +.. ...|.+|++....  ..  ..+. .....-..+.|+|++.        .+.+..-.+++|.++++.  .+..  +.
T Consensus       161 ~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~--------~~Yv~~e~s~~v~v~~~~~~~g~~~~~~  232 (345)
T PF10282_consen  161 PDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGK--------YAYVVNELSNTVSVFDYDPSDGSLTEIQ  232 (345)
T ss_dssp             EETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSS--------EEEEEETTTTEEEEEEEETTTTEEEEEE
T ss_pred             EecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcC--------EEEEecCCCCcEEEEeecccCCceeEEE
Confidence            643 4479999887654  21  2222 2234457788988764        456677889999999987  4533  22


Q ss_pred             EecC----C--CCCEEEEEEcCCCCEEEEEe-CCCcEEEEecC--CCe--eEEEEec-CCCEEEEEEcCCCCEEEEEE-C
Q 008496          486 SLNG----H--REPVYSLAFSPTGEYLASGS-LDKSMHIWSLK--EGK--IVKTYTG-NGGIFEVCWNKEGDKIAACF-A  552 (563)
Q Consensus       486 ~~~~----h--~~~i~~l~~spdg~~lasgs-~dg~v~iw~~~--~~~--~~~~~~~-~~~i~~l~w~~~g~~la~~~-~  552 (563)
                      .+..    .  ......|++||||++|.++. ..+.|.+|++.  +|+  .+..+.. .....+++++|+|++|+++. .
T Consensus       233 ~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~  312 (345)
T PF10282_consen  233 TISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQD  312 (345)
T ss_dssp             EEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETT
T ss_pred             EeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecC
Confidence            2221    1  12578899999999987655 56789999993  344  3444443 33478999999999998875 5


Q ss_pred             CCeEEEEEee
Q 008496          553 NHTVCVLDFR  562 (563)
Q Consensus       553 ~~~v~v~~~~  562 (563)
                      ++.|.||++.
T Consensus       313 s~~v~vf~~d  322 (345)
T PF10282_consen  313 SNTVSVFDID  322 (345)
T ss_dssp             TTEEEEEEEE
T ss_pred             CCeEEEEEEe
Confidence            6689999874

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.34  E-value=1e-10  Score=105.19  Aligned_cols=181  Identities=19%  Similarity=0.299  Sum_probs=134.1

Q ss_pred             EEEEeCCCeEEEEEcCCCcceeeecCCCc------ceeEEEECCCCCEEEEEeCCCcEEEEeCCCCce--eeeecccCCC
Q 008496          371 FATSSTDNMIYVCKIGENRPIKTFAGHQG------EVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKY--VHDLREHSKE  442 (563)
Q Consensus       371 ~~~~~~d~~i~~~~~~~~~~~~~~~~h~~------~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~--~~~~~~~~~~  442 (563)
                      ++.....|.|.++..........+++-..      ...++.|++.+.-++++-.+|.+.+-+......  ++..+.|.-+
T Consensus        88 l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E  167 (339)
T KOG0280|consen   88 LLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFE  167 (339)
T ss_pred             eeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeeccccccccee
Confidence            34556677787777665544444443221      245789999999999999999998666554443  3377889999


Q ss_pred             EEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCC-CCeEEEE-ecCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEe
Q 008496          443 IYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVE-LGKLLYS-LNGHREPVYSLAFSP-TGEYLASGSLDKSMHIWS  519 (563)
Q Consensus       443 i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~-~~~~~~~-~~~h~~~i~~l~~sp-dg~~lasgs~dg~v~iw~  519 (563)
                      +....|+....        .++.+|+.|+.+..||++ .++.++. .+-|...|.+|.-|| .+.+|+||+.|-.|++||
T Consensus       168 ~Wta~f~~~~p--------nlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~D  239 (339)
T KOG0280|consen  168 AWTAKFSDKEP--------NLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLD  239 (339)
T ss_pred             eeeeecccCCC--------ceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeee
Confidence            99988865432        388999999999999999 4556665 566888999998886 478999999999999999


Q ss_pred             cCC-CeeEEEEecCCCEEEEEEcCCC--CEEEEEECCCeEEEEE
Q 008496          520 LKE-GKIVKTYTGNGGIFEVCWNKEG--DKIAACFANHTVCVLD  560 (563)
Q Consensus       520 ~~~-~~~~~~~~~~~~i~~l~w~~~g--~~la~~~~~~~v~v~~  560 (563)
                      .++ ++.+..-.-.++|+-+.|+|.-  ..||+|..+| ..|.+
T Consensus       240 tRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~  282 (339)
T KOG0280|consen  240 TRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNG-AKILD  282 (339)
T ss_pred             hhcccCccccCccccceEEEEecchhhhHHHHHHHhcC-ceEEE
Confidence            984 5666655556899999999964  4667776665 34444

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.34  E-value=4.3e-11  Score=124.53  Aligned_cols=199  Identities=18%  Similarity=0.209  Sum_probs=155.0

Q ss_pred             CceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEEeCC
Q 008496          216 SEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYD  295 (563)
Q Consensus       216 ~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~d  295 (563)
                      +.|+.+.+.-....++.+..+..+-||+...+......+......             ......+-.+++.-++++|+.-
T Consensus        88 ~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~-------------l~~~~~~g~s~~~~~i~~gsv~  154 (967)
T KOG0974|consen   88 DWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCT-------------LYSSLIIGDSAEELYIASGSVF  154 (967)
T ss_pred             ccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEE-------------EEeEEEEeccCcEEEEEecccc
Confidence            345556667778888999999999999987654322211111100             0112333456777899999999


Q ss_pred             CeEEEEEcCCceeE-eeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeE-EeeecccCeEEEecCCCceEEE
Q 008496          296 GQARIWSTNGDLKC-TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQ-QFEFHSGPTLDVDWRNNVSFAT  373 (563)
Q Consensus       296 g~i~vw~~~~~~~~-~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  373 (563)
                      +.|.+|......+. .+.+|.+.|+.+.|+-+|.+++++|.|+++++|++.+.+... ....|...+..+.+.++ .+++
T Consensus       155 ~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n-~i~t  233 (967)
T KOG0974|consen  155 GEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN-RIIT  233 (967)
T ss_pred             ccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc-eeEE
Confidence            99999997654433 489999999999999999999999999999999999887665 55678888888888777 8999


Q ss_pred             EeCCCeEEEEEcCCCcceeeecCCCc-ceeEEEECCCCCEEEEEeCCCcEEEEeCCC
Q 008496          374 SSTDNMIYVCKIGENRPIKTFAGHQG-EVNCVKWDPTGSLLASCSDDVTAKIWNMKQ  429 (563)
Q Consensus       374 ~~~d~~i~~~~~~~~~~~~~~~~h~~-~i~~~~~~~~~~~las~s~dg~i~iwd~~~  429 (563)
                      .+.|-+.++|+... .....+.+|.+ .|..++..++...++|+++|+.+++|++..
T Consensus       234 ~gedctcrvW~~~~-~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~  289 (967)
T KOG0974|consen  234 VGEDCTCRVWGVNG-TQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG  289 (967)
T ss_pred             eccceEEEEEeccc-ceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence            99999999996543 33447888876 489999999999999999999999999754

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.33  E-value=2.4e-09  Score=117.66  Aligned_cols=274  Identities=14%  Similarity=0.246  Sum_probs=173.7

Q ss_pred             CCCeEEEEECCCCCEEEEEeCCCeEEEE----EcCCceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCce
Q 008496          274 SKDVTTLDWNGEGTLLATGSYDGQARIW----STNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEW  349 (563)
Q Consensus       274 ~~~V~~l~~s~~g~~l~sg~~dg~i~vw----~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~  349 (563)
                      ...|.++.+-++...++.+..+|.|.+.    +.+.........-...|.+++||||+..|+....++++.+-+ ++.+.
T Consensus        75 ~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt-~~fd~  153 (928)
T PF04762_consen   75 NDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMT-RDFDP  153 (928)
T ss_pred             CCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEe-ccceE
Confidence            4679999999999999999999999999    554444444444567899999999999999999899988764 34444


Q ss_pred             eEEeeecc-----cCeEEEecCCC-ceEEEEeCCCeEEEEEcCCCcc---eeeecCCCcceeEEEECCCCCEEEEEeC--
Q 008496          350 KQQFEFHS-----GPTLDVDWRNN-VSFATSSTDNMIYVCKIGENRP---IKTFAGHQGEVNCVKWDPTGSLLASCSD--  418 (563)
Q Consensus       350 ~~~~~~~~-----~~~~~~~~~~~-~~~~~~~~d~~i~~~~~~~~~~---~~~~~~h~~~i~~~~~~~~~~~las~s~--  418 (563)
                      +.....+.     ...+.+.|-.. ..|=...+...-+- ......|   ...+. +...-..++|..||.++|+.+-  
T Consensus       154 i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~-~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~  231 (928)
T PF04762_consen  154 ISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQ-LRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEP  231 (928)
T ss_pred             EEEeecCccccCCCceeeeccCcccCccCcchhhhhhhh-ccCCCCCccccCccc-cCCCceEEEECCCCcEEEEEEEEc
Confidence            43333222     23345555332 12211110000000 0000001   11222 3445568999999999998774  


Q ss_pred             -C---CcEEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeC---CCeEEEEeCCCCeEEEEe----
Q 008496          419 -D---VTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASF---DSTVKLWDVELGKLLYSL----  487 (563)
Q Consensus       419 -d---g~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~---dg~i~iwd~~~~~~~~~~----  487 (563)
                       .   ..+|||+-. +.....-..-.+--.+++|.|.|.         ++|+...   ...|.+|. ++|-....+    
T Consensus       232 ~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~---------lIA~~q~~~~~~~VvFfE-rNGLrhgeF~l~~  300 (928)
T PF04762_consen  232 ETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGN---------LIASSQRLPDRHDVVFFE-RNGLRHGEFTLRF  300 (928)
T ss_pred             CCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCC---------EEEEEEEcCCCcEEEEEe-cCCcEeeeEecCC
Confidence             3   478999844 443332222233345789999885         6666543   34566665 334333222    


Q ss_pred             cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCe--eEEE--EecCCCEEEEEEcCCC-CEEEEEECCCeEEEEEee
Q 008496          488 NGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGK--IVKT--YTGNGGIFEVCWNKEG-DKIAACFANHTVCVLDFR  562 (563)
Q Consensus       488 ~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~--~~~~--~~~~~~i~~l~w~~~g-~~la~~~~~~~v~v~~~~  562 (563)
                      ......|..+.|++|+..||..-.|. |.+|-..+..  +.+.  +.....+..+.|+|.. ..|.+...++.+.+++|.
T Consensus       301 ~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~  379 (928)
T PF04762_consen  301 DPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFA  379 (928)
T ss_pred             CCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEE
Confidence            23456799999999999999977665 9999998865  2222  2334445569999964 578888887888777663

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.33  E-value=9e-10  Score=110.06  Aligned_cols=223  Identities=18%  Similarity=0.359  Sum_probs=153.5

Q ss_pred             eEecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCE
Q 008496          209 TILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTL  288 (563)
Q Consensus       209 ~~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~  288 (563)
                      .+|.||...|..+.|+...+.|-|...+|.|.+|-+..+......               ..+...+.|.+++|+.||+.
T Consensus        65 QtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEM---------------iNnRnKSvV~SmsWn~dG~k  129 (1189)
T KOG2041|consen   65 QTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEM---------------INNRNKSVVVSMSWNLDGTK  129 (1189)
T ss_pred             hhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHH---------------hhCcCccEEEEEEEcCCCcE
Confidence            578999999999999999999999999999999998766422110               01123456899999999999


Q ss_pred             EEEEeCCCeEEEEEcCCceeE--eeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCc-------e-eE---Eeee
Q 008496          289 LATGSYDGQARIWSTNGDLKC--TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEE-------W-KQ---QFEF  355 (563)
Q Consensus       289 l~sg~~dg~i~vw~~~~~~~~--~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~-------~-~~---~~~~  355 (563)
                      +.....||.|.+=.++|....  .+.+.  -...+.|+++...++.+-..|.+.++|.+..-       + +.   .+..
T Consensus       130 IcIvYeDGavIVGsvdGNRIwgKeLkg~--~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~  207 (1189)
T KOG2041|consen  130 ICIVYEDGAVIVGSVDGNRIWGKELKGQ--LLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSN  207 (1189)
T ss_pred             EEEEEccCCEEEEeeccceecchhcchh--eccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecC
Confidence            999999999988877765332  12221  12468899999999999999999999965321       1 10   0110


Q ss_pred             cccCeEEEecC---------CCceEEEEeCCCeEEEEEcCCC-cceeeecCCCcceeEEEECCCCCEEEEEeCCC-----
Q 008496          356 HSGPTLDVDWR---------NNVSFATSSTDNMIYVCKIGEN-RPIKTFAGHQGEVNCVKWDPTGSLLASCSDDV-----  420 (563)
Q Consensus       356 ~~~~~~~~~~~---------~~~~~~~~~~d~~i~~~~~~~~-~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg-----  420 (563)
                      ....+-.+.|.         +.-.++.|-.+|.+.+..-.+. .|+..-.|  -.+..+.|+++|..||.|+.+.     
T Consensus       208 ~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dtg--m~~vgakWnh~G~vLAvcG~~~da~~~  285 (1189)
T KOG2041|consen  208 FPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVDTG--MKIVGAKWNHNGAVLAVCGNDSDADEP  285 (1189)
T ss_pred             CCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEecc--cEeecceecCCCcEEEEccCcccccCc
Confidence            11123445563         2346888888888877655433 34332222  4678899999999999998753     


Q ss_pred             ----cEEEEeCCCCceeeeecccCCCEEEEEEccC
Q 008496          421 ----TAKIWNMKQDKYVHDLREHSKEIYTIRWSPT  451 (563)
Q Consensus       421 ----~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~  451 (563)
                          .|.+|. .-+..+.+++.....|++++|-..
T Consensus       286 ~d~n~v~Fys-p~G~i~gtlkvpg~~It~lsWEg~  319 (1189)
T KOG2041|consen  286 TDSNKVHFYS-PYGHIVGTLKVPGSCITGLSWEGT  319 (1189)
T ss_pred             cccceEEEec-cchhheEEEecCCceeeeeEEcCC
Confidence                344443 234456677777788888888543

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.33  E-value=4.7e-10  Score=109.08  Aligned_cols=274  Identities=18%  Similarity=0.291  Sum_probs=170.8

Q ss_pred             eEEEEECCCCCEEEEEeCCCeEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEEEeeCC-----------CcEEEEECC
Q 008496          277 VTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCD-----------KTAIVWDVK  345 (563)
Q Consensus       277 V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D-----------~~v~iwd~~  345 (563)
                      -+-+.|||.|.||+|--.-| |.+|--..-....--.|.+ |.-+.|||+.+||+|-+..           ..++|||+.
T Consensus       213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~Hp~-Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~  290 (698)
T KOG2314|consen  213 ETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFYHPG-VQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIA  290 (698)
T ss_pred             eeeEEecCCceEEEEEeccc-eeeecCccHHHHHhccCCC-ceeeecCCccceEEEecCCccccCcccCCCceEEEEEcc
Confidence            46789999999999876644 7788543221112223554 6778999999999986631           479999999


Q ss_pred             CCceeEEeeecccCe---EEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeC---C
Q 008496          346 TEEWKQQFEFHSGPT---LDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD---D  419 (563)
Q Consensus       346 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~---d  419 (563)
                      +|...+.|....++.   .-+.|..+..+.+.-..+.|.++....-.++..-.-.-..|....|+|.+.+||-=+.   +
T Consensus       291 tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~  370 (698)
T KOG2314|consen  291 TGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNN  370 (698)
T ss_pred             ccchhcceeccCCCccccceEEeccCCceeEEeccceEEEEecCceeeecccccCCccccCcccCCCcceEEEEcccccC
Confidence            999998887743332   2357887777777766688888876542221110111235777899999998874322   1


Q ss_pred             --CcEEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEE----------EeCCCeEEEEeCCCCeEEEEe
Q 008496          420 --VTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILAS----------ASFDSTVKLWDVELGKLLYSL  487 (563)
Q Consensus       420 --g~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s----------~s~dg~i~iwd~~~~~~~~~~  487 (563)
                        ..+.+-.+-+++.+++-.-|.-.=..+.|...|.         +|+.          .+.-..+-|+.++........
T Consensus       371 ~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gd---------yLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~  441 (698)
T KOG2314|consen  371 IPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGD---------YLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEV  441 (698)
T ss_pred             CcceEEEEecCccceeeeccceeeeccEEEeccCCc---------EEEEEEEeeccccccceEeeEEEEEeeccCCCcee
Confidence              1344455555554444333332333466766554         3321          111223455555433221112


Q ss_pred             cCCCCCEEEEEEcCCCCEEEEEeC---CCcEEEEecCC-C---eeEEEEecCCCEEEEEEcCCCCEEEEE---ECCCeEE
Q 008496          488 NGHREPVYSLAFSPTGEYLASGSL---DKSMHIWSLKE-G---KIVKTYTGNGGIFEVCWNKEGDKIAAC---FANHTVC  557 (563)
Q Consensus       488 ~~h~~~i~~l~~spdg~~lasgs~---dg~v~iw~~~~-~---~~~~~~~~~~~i~~l~w~~~g~~la~~---~~~~~v~  557 (563)
                      -....+|...+|-|.|..+++-+.   ..++.+|.+++ .   ++++.+.. ...+.+.|+|.|..++++   +..|.+.
T Consensus       442 velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk-~~~N~vfwsPkG~fvvva~l~s~~g~l~  520 (698)
T KOG2314|consen  442 VELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK-KFANTVFWSPKGRFVVVAALVSRRGDLE  520 (698)
T ss_pred             eecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcc-cccceEEEcCCCcEEEEEEecccccceE
Confidence            224567889999999987775443   35788998873 2   34555544 345789999999988866   4467888


Q ss_pred             EEEee
Q 008496          558 VLDFR  562 (563)
Q Consensus       558 v~~~~  562 (563)
                      .+|..
T Consensus       521 F~D~~  525 (698)
T KOG2314|consen  521 FYDTD  525 (698)
T ss_pred             EEecc
Confidence            88753

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.33  E-value=5.5e-10  Score=109.80  Aligned_cols=224  Identities=19%  Similarity=0.260  Sum_probs=149.8

Q ss_pred             CCCCEEEEeeCCCcEEEEecCCCCCcCCCCC----CCceEEEEEeeecccccCCCCeEEEEE----CCCCCEEEEEeCCC
Q 008496          225 PAGSLLASGSGDSTARIWTIADGTSNGGAQN----GPLNVLVLKHVKGRTNEKSKDVTTLDW----NGEGTLLATGSYDG  296 (563)
Q Consensus       225 p~~~~latgs~D~~i~iW~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~V~~l~~----s~~g~~l~sg~~dg  296 (563)
                      |...++|....||.+|||+...++.......    ...+......+....  .....+++.|    +.+-..++-|...|
T Consensus         3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~--s~~k~~~~~~~~~~s~~t~~lvlgt~~g   80 (541)
T KOG4547|consen    3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADY--SPMKWLSLEKAKKASLDTSMLVLGTPQG   80 (541)
T ss_pred             chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEecc--chHHHHhHHHHhhccCCceEEEeecCCc
Confidence            4567899999999999999876543211110    000000000000000  0001111111    33456788899999


Q ss_pred             eEEEEEcCC-ceeEee--ccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecCCCceEEE
Q 008496          297 QARIWSTNG-DLKCTL--SKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFAT  373 (563)
Q Consensus       297 ~i~vw~~~~-~~~~~~--~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (563)
                      .|.+|+..+ ++...+  .+|.++|.++.|+.+-..|.|++.|+.+..|+......++                      
T Consensus        81 ~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~----------------------  138 (541)
T KOG4547|consen   81 SVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIR----------------------  138 (541)
T ss_pred             cEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeee----------------------
Confidence            999999764 454444  4799999999999999999999999999999987654332                      


Q ss_pred             EeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEEEEEccCCC
Q 008496          374 SSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGS  453 (563)
Q Consensus       374 ~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~  453 (563)
                              +|           .+....+.+++++|||+.++++|  +.|++||+++++.+..|.+|.++|.++.|...-.
T Consensus       139 --------~~-----------~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~  197 (541)
T KOG4547|consen  139 --------IW-----------KEQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLID  197 (541)
T ss_pred             --------ee-----------ccCCCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEecc
Confidence                    22           22334567899999999999886  5899999999999999999999999999976511


Q ss_pred             CCCCCCCcEEEEEEeCCCeEEEEeCCC----CeEEEEecCCCCCEEE
Q 008496          454 GTNNPNQQLILASASFDSTVKLWDVEL----GKLLYSLNGHREPVYS  496 (563)
Q Consensus       454 ~~~~~~~~~~l~s~s~dg~i~iwd~~~----~~~~~~~~~h~~~i~~  496 (563)
                      +   ..+.++|.+...+.-|.+|-++.    +...+.+.....||+.
T Consensus       198 g---~~G~~vLssa~~~r~i~~w~v~~~~kkks~~~sl~~~dipv~~  241 (541)
T KOG4547|consen  198 G---IIGKYVLSSAAAERGITVWVVEKEDKKKSLSCSLTVPDIPVTS  241 (541)
T ss_pred             c---cccceeeeccccccceeEEEEEcccccchhheeeccCCCCeEe
Confidence            1   12345788888888889997653    2233444444445443

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.32  E-value=3.5e-10  Score=116.13  Aligned_cols=215  Identities=16%  Similarity=0.216  Sum_probs=129.7

Q ss_pred             CCeEEEEECCCCCEEEEEeCC-C--eEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEEE-eeCCCc--EEEEECCCCc
Q 008496          275 KDVTTLDWNGEGTLLATGSYD-G--QARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLT-GSCDKT--AIVWDVKTEE  348 (563)
Q Consensus       275 ~~V~~l~~s~~g~~l~sg~~d-g--~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s-~s~D~~--v~iwd~~~~~  348 (563)
                      ..+.+..|||||+.|+..+.+ +  .|.+|+..+.....+....+......|+|+|+.|+. .+.++.  |.+||+.+++
T Consensus       218 ~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~  297 (448)
T PRK04792        218 EPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKA  297 (448)
T ss_pred             CcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCC
Confidence            457788999999999876543 3  578888765443334333344457899999998864 455554  4555554443


Q ss_pred             eeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeC-CCc--EEEE
Q 008496          349 WKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD-DVT--AKIW  425 (563)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~-dg~--i~iw  425 (563)
                      .                                          ..+..+.......+|+|||+.|+..+. ++.  |.++
T Consensus       298 ~------------------------------------------~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~  335 (448)
T PRK04792        298 L------------------------------------------TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRV  335 (448)
T ss_pred             e------------------------------------------EECccCCCCccceEECCCCCEEEEEECCCCCceEEEE
Confidence            2                                          112223334456889999998876654 444  5556


Q ss_pred             eCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCC--eEEEEeCCCCeEEEEecCCCCCEEEEEEcCCC
Q 008496          426 NMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDS--TVKLWDVELGKLLYSLNGHREPVYSLAFSPTG  503 (563)
Q Consensus       426 d~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg--~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg  503 (563)
                      |+.+++.. .+...........|+|+|.        .++++...++  .|.++|+.+++.. .+... ......+|+|||
T Consensus       336 dl~~g~~~-~Lt~~g~~~~~~~~SpDG~--------~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~-~~d~~ps~spdG  404 (448)
T PRK04792        336 NLASGKVS-RLTFEGEQNLGGSITPDGR--------SMIMVNRTNGKFNIARQDLETGAMQ-VLTST-RLDESPSVAPNG  404 (448)
T ss_pred             ECCCCCEE-EEecCCCCCcCeeECCCCC--------EEEEEEecCCceEEEEEECCCCCeE-EccCC-CCCCCceECCCC
Confidence            77666543 2222222334568888875        2444444455  4555687777643 23322 122345899999


Q ss_pred             CEEEEEeCC-C--cEEEEecCCCeeEEEEec-CCCEEEEEEcCC
Q 008496          504 EYLASGSLD-K--SMHIWSLKEGKIVKTYTG-NGGIFEVCWNKE  543 (563)
Q Consensus       504 ~~lasgs~d-g--~v~iw~~~~~~~~~~~~~-~~~i~~l~w~~~  543 (563)
                      ++|+..+.+ +  .+.+++. +|+....+.. .+.+...+|+|-
T Consensus       405 ~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~~~g~~~~p~Wsp~  447 (448)
T PRK04792        405 TMVIYSTTYQGKQVLAAVSI-DGRFKARLPAGQGEVKSPAWSPF  447 (448)
T ss_pred             CEEEEEEecCCceEEEEEEC-CCCceEECcCCCCCcCCCccCCC
Confidence            988765543 3  3677776 5555555543 345678899873

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.31  E-value=1.7e-08  Score=111.10  Aligned_cols=322  Identities=14%  Similarity=0.281  Sum_probs=196.1

Q ss_pred             CCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEEeC
Q 008496          215 TSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSY  294 (563)
Q Consensus       215 ~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~  294 (563)
                      .+.|.++.|-++...|+.+..+|-|.+........       ........       .-...|.+++||||+.+|+..+.
T Consensus        75 ~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~-------~~~~E~VG-------~vd~GI~a~~WSPD~Ella~vT~  140 (928)
T PF04762_consen   75 NDKIVSFQYLADSESLCIALASGDIILVREDPDPD-------EDEIEIVG-------SVDSGILAASWSPDEELLALVTG  140 (928)
T ss_pred             CCcEEEEEeccCCCcEEEEECCceEEEEEccCCCC-------CceeEEEE-------EEcCcEEEEEECCCcCEEEEEeC
Confidence            36788999999988888888889888883221000       00111111       12457999999999999999999


Q ss_pred             CCeEEEEEcCC------------------------ceeEeecc------------------------CCCCEEEEEeCCC
Q 008496          295 DGQARIWSTNG------------------------DLKCTLSK------------------------HKGPIFSLKWNKK  326 (563)
Q Consensus       295 dg~i~vw~~~~------------------------~~~~~~~~------------------------h~~~V~~l~~~~~  326 (563)
                      +|++.+-+.+-                        +....|.|                        +...-..++|..|
T Consensus       141 ~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGD  220 (928)
T PF04762_consen  141 EGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGD  220 (928)
T ss_pred             CCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCC
Confidence            99887764211                        01111111                        1123356889999


Q ss_pred             CCEEEEeeC---C---CcEEEEECCCCceeEEeeecccCeEEEecCCCceEEEEeCC----CeEEEEEcCCCcceeee--
Q 008496          327 GDYLLTGSC---D---KTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTD----NMIYVCKIGENRPIKTF--  394 (563)
Q Consensus       327 ~~~l~s~s~---D---~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d----~~i~~~~~~~~~~~~~~--  394 (563)
                      |.+|++.+.   .   +.++||+-+ |.+...-+...+--..++|++...++++...    ..|.+|.. ++-.-..|  
T Consensus       221 G~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfEr-NGLrhgeF~l  298 (928)
T PF04762_consen  221 GEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFER-NGLRHGEFTL  298 (928)
T ss_pred             CcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEec-CCcEeeeEec
Confidence            999988764   2   579999854 6655544433344456789887776555432    23444433 22222222  


Q ss_pred             --cCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCcee--eeeccc-CCCEEEEEEccCCCCCCCCCCcEEEEEEeC
Q 008496          395 --AGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYV--HDLREH-SKEIYTIRWSPTGSGTNNPNQQLILASASF  469 (563)
Q Consensus       395 --~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~--~~~~~~-~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~  469 (563)
                        ......|..+.|++|+..||..-.|. |.+|-..+....  +.+... ...+..+.|+|...        ..|.....
T Consensus       299 ~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p--------~~L~v~t~  369 (928)
T PF04762_consen  299 RFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKP--------LRLHVLTS  369 (928)
T ss_pred             CCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCC--------CEEEEEec
Confidence              23455789999999999999977665 999987765432  223221 23344588988643        23344444


Q ss_pred             CCeEEEEeC----CCC--------eEEEEec-----------------------CCCCCEEEEEEcCCCCEEEEEeCCCc
Q 008496          470 DSTVKLWDV----ELG--------KLLYSLN-----------------------GHREPVYSLAFSPTGEYLASGSLDKS  514 (563)
Q Consensus       470 dg~i~iwd~----~~~--------~~~~~~~-----------------------~h~~~i~~l~~spdg~~lasgs~dg~  514 (563)
                      +|.+..++.    ..+        ..+..+.                       ....+|.+++|++++..+|+-..||.
T Consensus       370 ~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~  449 (928)
T PF04762_consen  370 NGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGS  449 (928)
T ss_pred             CCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCC
Confidence            455544332    111        0111111                       12467999999999988999999999


Q ss_pred             EEEEecCCCe--------eEEEEe-----------cCCCEEEEEEcCCCCEEEEEECC---CeEEEEEe
Q 008496          515 MHIWSLKEGK--------IVKTYT-----------GNGGIFEVCWNKEGDKIAACFAN---HTVCVLDF  561 (563)
Q Consensus       515 v~iw~~~~~~--------~~~~~~-----------~~~~i~~l~w~~~g~~la~~~~~---~~v~v~~~  561 (563)
                      |.+|......        +...+.           ....+..++|-.+...++....+   ..+.++++
T Consensus       450 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  518 (928)
T PF04762_consen  450 LSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDI  518 (928)
T ss_pred             EEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEEEEEEecCcccceEEEEEe
Confidence            9999854321        111111           12346789999888777766554   45555554

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.31  E-value=2.7e-09  Score=103.03  Aligned_cols=300  Identities=16%  Similarity=0.258  Sum_probs=190.0

Q ss_pred             CceEEEEECCCCCEEEEeeCCCc---------------EEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeE-E
Q 008496          216 SEVCACAWSPAGSLLASGSGDST---------------ARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVT-T  279 (563)
Q Consensus       216 ~~V~~~~~sp~~~~latgs~D~~---------------i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~-~  279 (563)
                      ..|.-+.|||.+++|.|-+..+.               +.+||+.++.....             +...  ....... -
T Consensus        72 ~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~s-------------f~~~--~q~~~~Wp~  136 (561)
T COG5354          72 PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFS-------------FNGI--SQPYLGWPV  136 (561)
T ss_pred             CCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEee-------------cccc--CCcccccce
Confidence            45788899999999999765444               78888776543211             1111  0111133 5


Q ss_pred             EEECCCCCEEEEEeCCCeEEEEEcCCceeEeeccC---CCCEEEEEeCCCCCE--EEE-----eeCCCcEEEEECCCCce
Q 008496          280 LDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKH---KGPIFSLKWNKKGDY--LLT-----GSCDKTAIVWDVKTEEW  349 (563)
Q Consensus       280 l~~s~~g~~l~sg~~dg~i~vw~~~~~~~~~~~~h---~~~V~~l~~~~~~~~--l~s-----~s~D~~v~iwd~~~~~~  349 (563)
                      +.|+-+..++|-- ....+.|++..+... ....|   ...|....|+|.++.  |+.     .+.++++++|.+..+..
T Consensus       137 ~k~s~~D~y~ARv-v~~sl~i~e~t~n~~-~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~  214 (561)
T COG5354         137 LKFSIDDKYVARV-VGSSLYIHEITDNIE-EHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSV  214 (561)
T ss_pred             eeeeecchhhhhh-ccCeEEEEecCCccc-cCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCe
Confidence            6788887776644 345788888633221 11111   245777788887543  332     56778999999887666


Q ss_pred             eEEeeecccCeEEEecCCCceEEEE-------e-----CCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEe
Q 008496          350 KQQFEFHSGPTLDVDWRNNVSFATS-------S-----TDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCS  417 (563)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~-------~-----~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s  417 (563)
                      +.+-.+....-..+.|.....+.++       +     +...++++++.... +.....-.++|...+|.|.++.+++++
T Consensus       215 l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~-i~V~~~~~~pVhdf~W~p~S~~F~vi~  293 (561)
T COG5354         215 LVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERS-IPVEKDLKDPVHDFTWEPLSSRFAVIS  293 (561)
T ss_pred             eeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccc-cceeccccccceeeeecccCCceeEEe
Confidence            6555444445556677654433221       1     23467888886432 333335578999999999999887766


Q ss_pred             --CCCcEEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCC---CeEEEEeCCCCeEEE-EecCCC
Q 008496          418 --DDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFD---STVKLWDVELGKLLY-SLNGHR  491 (563)
Q Consensus       418 --~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~d---g~i~iwd~~~~~~~~-~~~~h~  491 (563)
                        .+-++.++|++.. .+.  ....+.-.++.|+|.+.         +++.++.|   |.|-+||......+. .+.+. 
T Consensus       294 g~~pa~~s~~~lr~N-l~~--~~Pe~~rNT~~fsp~~r---------~il~agF~nl~gni~i~~~~~rf~~~~~~~~~-  360 (561)
T COG5354         294 GYMPASVSVFDLRGN-LRF--YFPEQKRNTIFFSPHER---------YILFAGFDNLQGNIEIFDPAGRFKVAGAFNGL-  360 (561)
T ss_pred             cccccceeecccccc-eEE--ecCCcccccccccCccc---------EEEEecCCccccceEEeccCCceEEEEEeecC-
Confidence              5788899998766 332  23444556777888764         45555554   789999987554443 55543 


Q ss_pred             CCEEEEEEcCCCCEEEEEe------CCCcEEEEecCCCeeEEEEecCCCEEEEEEcCCCCEEEEEECCC
Q 008496          492 EPVYSLAFSPTGEYLASGS------LDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANH  554 (563)
Q Consensus       492 ~~i~~l~~spdg~~lasgs------~dg~v~iw~~~~~~~~~~~~~~~~i~~l~w~~~g~~la~~~~~~  554 (563)
                       ...-+.|||||+++-+..      -|..|+||++....+-       ..+.+.|.|.|...-+.+...
T Consensus       361 -n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~f-------el~~~~W~p~~~~~ttsSs~~  421 (561)
T COG5354         361 -NTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKVF-------ELTNITWDPSGQYVTTSSSCP  421 (561)
T ss_pred             -CceEeeccCCceEEEecCCCcccccCcceEEEEecCchhh-------hhhhccccCCcccceeeccCC
Confidence             235567999999987654      3678999998643322       456778888887666555443

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.29  E-value=1.9e-11  Score=133.02  Aligned_cols=201  Identities=17%  Similarity=0.334  Sum_probs=154.5

Q ss_pred             ecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEE
Q 008496          211 LEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLA  290 (563)
Q Consensus       211 l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~  290 (563)
                      ++.|-..|.++.=||...+.+||+.||.+++|....+.          .+.+.+.     .+ ...|+.+.|+.+|+.+.
T Consensus      2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~----------~v~~~rt-----~g-~s~vtr~~f~~qGnk~~ 2267 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQ----------QVVCFRT-----AG-NSRVTRSRFNHQGNKFG 2267 (2439)
T ss_pred             eecccCceeeecCCCCCceEEecCCCceEEEEeccCCC----------eEEEeec-----cC-cchhhhhhhcccCCcee
Confidence            34455678888889999999999999999999986543          2222222     12 26699999999999999


Q ss_pred             EEeCCCeEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEEEee---CCCcEEEEECCCCceeEEeeecccCeEEEecCC
Q 008496          291 TGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGS---CDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN  367 (563)
Q Consensus       291 sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s---~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~  367 (563)
                      .+..||.+.+|..+.+.....+.|.......+|-.  ..+++++   .++.+.+||..-..                   
T Consensus      2268 i~d~dg~l~l~q~~pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~------------------- 2326 (2439)
T KOG1064|consen 2268 IVDGDGDLSLWQASPKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPP------------------- 2326 (2439)
T ss_pred             eeccCCceeecccCCcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCc-------------------
Confidence            99999999999999888888889998888888865  4556554   35678888842110                   


Q ss_pred             CceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEEEE
Q 008496          368 NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIR  447 (563)
Q Consensus       368 ~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~  447 (563)
                                         ....+.  ..|.+.++++++-|..++|+||+.+|.|.+||++..+.++.++.         
T Consensus      2327 -------------------~~s~v~--~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~--------- 2376 (2439)
T KOG1064|consen 2327 -------------------MNSLVH--TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA--------- 2376 (2439)
T ss_pred             -------------------ccceee--eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh---------
Confidence                               000111  56889999999999999999999999999999998888777654         


Q ss_pred             EccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEec
Q 008496          448 WSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLN  488 (563)
Q Consensus       448 ~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~  488 (563)
                      +.          .+.++++|+..|.|+||++..-..++++.
T Consensus      2377 ~~----------~~~~f~~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2377 LD----------TREYFVTGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred             hh----------hhheeeccCcccceEEEEccccchhhcCc
Confidence            11          12378999999999999998776666653

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.29  E-value=2.1e-07  Score=92.55  Aligned_cols=258  Identities=13%  Similarity=0.231  Sum_probs=158.7

Q ss_pred             CCeEEEEECCCCCEEEEEeC----CCeEEEEEcCC---cee--EeeccCCCCEEEEEeCCCCCEEEEee-CCCcEEEEEC
Q 008496          275 KDVTTLDWNGEGTLLATGSY----DGQARIWSTNG---DLK--CTLSKHKGPIFSLKWNKKGDYLLTGS-CDKTAIVWDV  344 (563)
Q Consensus       275 ~~V~~l~~s~~g~~l~sg~~----dg~i~vw~~~~---~~~--~~~~~h~~~V~~l~~~~~~~~l~s~s-~D~~v~iwd~  344 (563)
                      .....|+++|++++|.+...    +|.|..|..+.   .+.  ............++.+|++++|+++. .+|+|.++++
T Consensus        37 ~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l  116 (345)
T PF10282_consen   37 ENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPL  116 (345)
T ss_dssp             SSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             CCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEc
Confidence            34567889999999999877    46888887653   332  22322334456789999999998876 5899999999


Q ss_pred             CC-CceeEEe--eec-----------ccCeEEEecCCCc--eEEEEeCCCeEEEEEcCCCcc-e---eeec-CCCcceeE
Q 008496          345 KT-EEWKQQF--EFH-----------SGPTLDVDWRNNV--SFATSSTDNMIYVCKIGENRP-I---KTFA-GHQGEVNC  403 (563)
Q Consensus       345 ~~-~~~~~~~--~~~-----------~~~~~~~~~~~~~--~~~~~~~d~~i~~~~~~~~~~-~---~~~~-~h~~~i~~  403 (563)
                      .. +......  ..+           ......+.+.++.  .+++.-....|++|++..... +   ..+. ......+.
T Consensus       117 ~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh  196 (345)
T PF10282_consen  117 DDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRH  196 (345)
T ss_dssp             CTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEE
T ss_pred             cCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcE
Confidence            76 4433321  111           1124455565443  344444556788888876541 1   2222 22334678


Q ss_pred             EEECCCCCEEEEE-eCCCcEEEEeCC--CCce--eeeecc----c--CCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCe
Q 008496          404 VKWDPTGSLLASC-SDDVTAKIWNMK--QDKY--VHDLRE----H--SKEIYTIRWSPTGSGTNNPNQQLILASASFDST  472 (563)
Q Consensus       404 ~~~~~~~~~las~-s~dg~i~iwd~~--~~~~--~~~~~~----~--~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~  472 (563)
                      +.|+|+++++... -.+++|.++++.  .+..  +..+..    .  ......|+++|+|.        .+.++.-..++
T Consensus       197 ~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~--------~lyvsnr~~~s  268 (345)
T PF10282_consen  197 LAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGR--------FLYVSNRGSNS  268 (345)
T ss_dssp             EEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSS--------EEEEEECTTTE
T ss_pred             EEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCC--------EEEEEeccCCE
Confidence            9999999987554 458889999887  3322  111111    1  12467788888875        46667777889


Q ss_pred             EEEEeCC--CCeE--EEEecCCCCCEEEEEEcCCCCEEEEEe-CCCcEEEEec--CCCeeEEEEe--cCCCEEEEEE
Q 008496          473 VKLWDVE--LGKL--LYSLNGHREPVYSLAFSPTGEYLASGS-LDKSMHIWSL--KEGKIVKTYT--GNGGIFEVCW  540 (563)
Q Consensus       473 i~iwd~~--~~~~--~~~~~~h~~~i~~l~~spdg~~lasgs-~dg~v~iw~~--~~~~~~~~~~--~~~~i~~l~w  540 (563)
                      |.+|++.  ++++  +..+......-..++++|+|++|+++. .++.|.+|++  .+|.+...-.  .-....++.|
T Consensus       269 I~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci~f  345 (345)
T PF10282_consen  269 ISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVCIVF  345 (345)
T ss_dssp             EEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSSEEEEEE
T ss_pred             EEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEecccccCCCCEEEeC
Confidence            9999983  3433  333332233468999999999998877 5678999976  5776544321  2334455554

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.27  E-value=2.1e-10  Score=103.79  Aligned_cols=266  Identities=20%  Similarity=0.414  Sum_probs=167.1

Q ss_pred             CCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCc------eeEeeccCC------------CCEEEEEeCCCC--CEEEEe
Q 008496          274 SKDVTTLDWNGEGTLLATGSYDGQARIWSTNGD------LKCTLSKHK------------GPIFSLKWNKKG--DYLLTG  333 (563)
Q Consensus       274 ~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~------~~~~~~~h~------------~~V~~l~~~~~~--~~l~s~  333 (563)
                      ..-|+++.|...|.+|++|...|.|.++..+..      ....+++|.            ..|..+.|..++  ..++..
T Consensus        26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls  105 (460)
T COG5170          26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS  105 (460)
T ss_pred             cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence            356999999999999999999999999975432      223456664            357888887655  457777


Q ss_pred             eCCCcEEEEECCCCceeEE--------eeec-ccCeEEEecCCCceEE-EEeCCCeEEEEEcCCCcceeee-cCCCccee
Q 008496          334 SCDKTAIVWDVKTEEWKQQ--------FEFH-SGPTLDVDWRNNVSFA-TSSTDNMIYVCKIGENRPIKTF-AGHQGEVN  402 (563)
Q Consensus       334 s~D~~v~iwd~~~~~~~~~--------~~~~-~~~~~~~~~~~~~~~~-~~~~d~~i~~~~~~~~~~~~~~-~~h~~~i~  402 (563)
                      +.|++|++|.+......-.        +... .+++....-   ..+- .+.-|..|.      .+|.+.+ ..|.-.|+
T Consensus       106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~---l~lprls~hd~iia------a~p~rvyaNaH~yhiN  176 (460)
T COG5170         106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKE---LLLPRLSEHDEIIA------AKPCRVYANAHPYHIN  176 (460)
T ss_pred             cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHH---hhcccccccceEEE------eccceeccccceeEee
Confidence            8899999998865432110        1000 111111000   0000 000011111      1233444 56888899


Q ss_pred             EEEECCCCCEEEEEeCCCcEEEEeCCCCc---eeeeeccc-----CCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEE
Q 008496          403 CVKWDPTGSLLASCSDDVTAKIWNMKQDK---YVHDLREH-----SKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVK  474 (563)
Q Consensus       403 ~~~~~~~~~~las~s~dg~i~iwd~~~~~---~~~~~~~~-----~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~  474 (563)
                      ++.++.|...++++ +|-.|.+|++.-..   .+..++.|     ..-|++..|+|...        .++.-.+..|.|+
T Consensus       177 SiS~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~c--------n~fmYSsSkG~Ik  247 (460)
T COG5170         177 SISFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMC--------NVFMYSSSKGEIK  247 (460)
T ss_pred             eeeecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHc--------ceEEEecCCCcEE
Confidence            99999998887655 67789999875321   23334443     23467777877643        3566677789999


Q ss_pred             EEeCCCCe------EEEEe--c--------CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCC-eeEEEEec------
Q 008496          475 LWDVELGK------LLYSL--N--------GHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEG-KIVKTYTG------  531 (563)
Q Consensus       475 iwd~~~~~------~~~~~--~--------~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~-~~~~~~~~------  531 (563)
                      +-|++...      .+...  .        +-...|..+.|+|+|+||++-+.- +|+|||+... .++++...      
T Consensus       248 l~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyl-tvkiwDvnm~k~pikTi~~h~~l~~  326 (460)
T COG5170         248 LNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYL-TVKIWDVNMAKNPIKTIPMHCDLMD  326 (460)
T ss_pred             ehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccc-eEEEEecccccCCceeechHHHHHH
Confidence            99998321      12211  1        122468889999999999986654 7999999764 35666532      


Q ss_pred             -------CCCEE---EEEEcCCCCEEEEEECCCeEEE
Q 008496          532 -------NGGIF---EVCWNKEGDKIAACFANHTVCV  558 (563)
Q Consensus       532 -------~~~i~---~l~w~~~g~~la~~~~~~~v~v  558 (563)
                             +..|+   .+.|+.|.+.+.+|+-+...-+
T Consensus       327 ~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgi  363 (460)
T COG5170         327 ELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGI  363 (460)
T ss_pred             HHHhhhhccceeeeEEEEecCCcccccccccccceee
Confidence                   34454   6899999888888755444433

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.25  E-value=3.4e-09  Score=107.92  Aligned_cols=214  Identities=16%  Similarity=0.192  Sum_probs=125.3

Q ss_pred             cEEEEECCCCceeEEeeecccCeEEEecCCCce---EE-EEeCC--CeEEEEEcCCCcceeeecCCCcceeEEEECCCCC
Q 008496          338 TAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVS---FA-TSSTD--NMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGS  411 (563)
Q Consensus       338 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~d--~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~  411 (563)
                      .|.+.|...+... .+.........-.|.++..   |+ ++..+  ..|++.++..+...+ +....+.....+|+|||+
T Consensus       166 ~l~~~d~dG~~~~-~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~-lt~~~g~~~~p~wSPDG~  243 (428)
T PRK01029        166 ELWSVDYDGQNLR-PLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK-ILALQGNQLMPTFSPRKK  243 (428)
T ss_pred             eEEEEcCCCCCce-EcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE-eecCCCCccceEECCCCC
Confidence            4555555443322 2333333445557776632   32 33333  358888887654322 222333445689999999


Q ss_pred             EEEEEeC-CC----cEEEEeCCCC---ceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEE--eCCC-
Q 008496          412 LLASCSD-DV----TAKIWNMKQD---KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLW--DVEL-  480 (563)
Q Consensus       412 ~las~s~-dg----~i~iwd~~~~---~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iw--d~~~-  480 (563)
                      .||..++ +|    .+.+|++..+   ........+........|+|+|.        .++.+...+|...||  ++.. 
T Consensus       244 ~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~--------~Laf~s~~~g~~~ly~~~~~~~  315 (428)
T PRK01029        244 LLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGT--------RLVFVSNKDGRPRIYIMQIDPE  315 (428)
T ss_pred             EEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCC--------EEEEEECCCCCceEEEEECccc
Confidence            8876653 23    3444676542   22222222223346789999986        234444456765555  4432 


Q ss_pred             CeEEEEecCCCCCEEEEEEcCCCCEEEEEeCC---CcEEEEecCCCeeEEEEecCCCEEEEEEcCCCCEEEEEECC---C
Q 008496          481 GKLLYSLNGHREPVYSLAFSPTGEYLASGSLD---KSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFAN---H  554 (563)
Q Consensus       481 ~~~~~~~~~h~~~i~~l~~spdg~~lasgs~d---g~v~iw~~~~~~~~~~~~~~~~i~~l~w~~~g~~la~~~~~---~  554 (563)
                      +.....+..+...+...+|||||++|+..+.+   ..|.+||+.+++..........+..+.|+|||+.|++...+   .
T Consensus       316 g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~  395 (428)
T PRK01029        316 GQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAGNSNES  395 (428)
T ss_pred             ccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEECCCCCc
Confidence            23344455455567789999999999876543   46999999988765444343456789999999998865432   3


Q ss_pred             eEEEEEe
Q 008496          555 TVCVLDF  561 (563)
Q Consensus       555 ~v~v~~~  561 (563)
                      .+.++|+
T Consensus       396 ~L~~vdl  402 (428)
T PRK01029        396 ELYLISL  402 (428)
T ss_pred             eEEEEEC
Confidence            4666665

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.25  E-value=5.8e-08  Score=98.19  Aligned_cols=293  Identities=14%  Similarity=0.136  Sum_probs=174.7

Q ss_pred             CCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEc-C
Q 008496          226 AGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWST-N  304 (563)
Q Consensus       226 ~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~-~  304 (563)
                      .+..++.++.++.+.-+|..+|+..-...           ....  . ...   ..  .++..++.++.+|.+..+|. +
T Consensus        64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~-----------~~~~--~-~~~---p~--v~~~~v~v~~~~g~l~ald~~t  124 (377)
T TIGR03300        64 AGGKVYAADADGTVVALDAETGKRLWRVD-----------LDER--L-SGG---VG--ADGGLVFVGTEKGEVIALDAED  124 (377)
T ss_pred             ECCEEEEECCCCeEEEEEccCCcEeeeec-----------CCCC--c-ccc---eE--EcCCEEEEEcCCCEEEEEECCC
Confidence            36678888889999999987765321100           0000  0 011   11  24667888889999999997 4


Q ss_pred             CceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeE-----EEecCCCceEEEEeCCCe
Q 008496          305 GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTL-----DVDWRNNVSFATSSTDNM  379 (563)
Q Consensus       305 ~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~d~~  379 (563)
                      |++....... +.+.+.-.. .+..++.++.++.+..||.++++.+-.+........     .....+ ..++.+..++.
T Consensus       125 G~~~W~~~~~-~~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~-~~v~~~~~~g~  201 (377)
T TIGR03300       125 GKELWRAKLS-SEVLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIAD-GGVLVGFAGGK  201 (377)
T ss_pred             CcEeeeeccC-ceeecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEEC-CEEEEECCCCE
Confidence            6665443321 222211001 245777788899999999999887655543221110     000112 34556667788


Q ss_pred             EEEEEcCCCcceeeecCC-----Cc--c---e-eEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEEEEE
Q 008496          380 IYVCKIGENRPIKTFAGH-----QG--E---V-NCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRW  448 (563)
Q Consensus       380 i~~~~~~~~~~~~~~~~h-----~~--~---i-~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~  448 (563)
                      ++.++..+++.+-.....     ..  .   + .+..+  .+..+..++.+|.+..||..+++.+......  .......
T Consensus       202 v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~--~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~--~~~~p~~  277 (377)
T TIGR03300       202 LVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV--DGGQVYAVSYQGRVAALDLRSGRVLWKRDAS--SYQGPAV  277 (377)
T ss_pred             EEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE--ECCEEEEEEcCCEEEEEECCCCcEEEeeccC--CccCceE
Confidence            888888776544332110     00  0   0 11111  2456777888999999999988766543311  0011111


Q ss_pred             ccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCC-CEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEE
Q 008496          449 SPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHRE-PVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVK  527 (563)
Q Consensus       449 ~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~-~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~  527 (563)
                        .       ++  .+..++.||.|..+|..+|+.++....... ...+...  .+..|++++.+|.|.++|..+|+++.
T Consensus       278 --~-------~~--~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~  344 (377)
T TIGR03300       278 --D-------DN--RLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVA  344 (377)
T ss_pred             --e-------CC--EEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence              0       11  355677899999999999998876632211 1222222  46688899999999999999999998


Q ss_pred             EEecCC-CEE-EEEEcCCCCEEEEEECCCeEEEE
Q 008496          528 TYTGNG-GIF-EVCWNKEGDKIAACFANHTVCVL  559 (563)
Q Consensus       528 ~~~~~~-~i~-~l~w~~~g~~la~~~~~~~v~v~  559 (563)
                      .+...+ .+. .....  ++.|.++..||.|..|
T Consensus       345 ~~~~~~~~~~~sp~~~--~~~l~v~~~dG~l~~~  376 (377)
T TIGR03300       345 RLKTDGSGIASPPVVV--GDGLLVQTRDGDLYAF  376 (377)
T ss_pred             EEEcCCCccccCCEEE--CCEEEEEeCCceEEEe
Confidence            887544 222 22222  3468888889887544

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.22  E-value=1.6e-08  Score=113.32  Aligned_cols=249  Identities=12%  Similarity=0.117  Sum_probs=159.0

Q ss_pred             EEEEECCC-CCEEEEEeCCCeEEEEEcCCceeEeecc--C------------CCCEEEEEeCCCCCEEEEeeC-CCcEEE
Q 008496          278 TTLDWNGE-GTLLATGSYDGQARIWSTNGDLKCTLSK--H------------KGPIFSLKWNKKGDYLLTGSC-DKTAIV  341 (563)
Q Consensus       278 ~~l~~s~~-g~~l~sg~~dg~i~vw~~~~~~~~~~~~--h------------~~~V~~l~~~~~~~~l~s~s~-D~~v~i  341 (563)
                      ..+++++. |.++++-+.++.|++|+.+|.....+..  .            -....+++++++++.|+.+.. .+.|++
T Consensus       571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~  650 (1057)
T PLN02919        571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALRE  650 (1057)
T ss_pred             ceEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEE
Confidence            45788874 6677777888999999998876554432  1            112477888888887666554 467888


Q ss_pred             EECCCCceeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCc--ceeeecCCCcceeEEEECC-CCCEEEEEeC
Q 008496          342 WDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENR--PIKTFAGHQGEVNCVKWDP-TGSLLASCSD  418 (563)
Q Consensus       342 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~--~~~~~~~h~~~i~~~~~~~-~~~~las~s~  418 (563)
                      +|+.++.. .++...                  +..+.    +...+.  ....+    .....++++| ++.++++.+.
T Consensus       651 id~~~~~V-~tlag~------------------G~~g~----~~~gg~~~~~~~l----n~P~gVa~dp~~g~LyVad~~  703 (1057)
T PLN02919        651 IDFVNETV-RTLAGN------------------GTKGS----DYQGGKKGTSQVL----NSPWDVCFEPVNEKVYIAMAG  703 (1057)
T ss_pred             EecCCCEE-EEEecc------------------CcccC----CCCCChhhhHhhc----CCCeEEEEecCCCeEEEEECC
Confidence            88766532 222110                  00000    000000  00001    1234789999 5677788888


Q ss_pred             CCcEEEEeCCCCceeeeeccc---------------CCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeE
Q 008496          419 DVTAKIWNMKQDKYVHDLREH---------------SKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKL  483 (563)
Q Consensus       419 dg~i~iwd~~~~~~~~~~~~~---------------~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~  483 (563)
                      ++.|++||..++... .+.+.               -.....++++|++.        .++++-+.++.|++||+.++..
T Consensus       704 ~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~--------~LYVADs~n~~Irv~D~~tg~~  774 (1057)
T PLN02919        704 QHQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLK--------ELYIADSESSSIRALDLKTGGS  774 (1057)
T ss_pred             CCeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeCCCC--------EEEEEECCCCeEEEEECCCCcE
Confidence            999999998766432 11110               01234567777653        3566777789999999987653


Q ss_pred             EEEecC-------------C--------CCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEecC----------
Q 008496          484 LYSLNG-------------H--------REPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGN----------  532 (563)
Q Consensus       484 ~~~~~~-------------h--------~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~~----------  532 (563)
                      .....+             +        -..-..++|+|+|..+++-+.+++|++||..++.+.......          
T Consensus       775 ~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~  854 (1057)
T PLN02919        775 RLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKAL  854 (1057)
T ss_pred             EEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCccc
Confidence            211100             0        012358999999999999899999999999887765332110          


Q ss_pred             ----CCEEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496          533 ----GGIFEVCWNKEGDKIAACFANHTVCVLDFR  562 (563)
Q Consensus       533 ----~~i~~l~w~~~g~~la~~~~~~~v~v~~~~  562 (563)
                          .....++++++|+.+++...|++|++||++
T Consensus       855 ~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~  888 (1057)
T PLN02919        855 KAQLSEPAGLALGENGRLFVADTNNSLIRYLDLN  888 (1057)
T ss_pred             ccccCCceEEEEeCCCCEEEEECCCCEEEEEECC
Confidence                135689999999988888899999999974

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.22  E-value=1.8e-07  Score=90.89  Aligned_cols=239  Identities=13%  Similarity=0.107  Sum_probs=144.9

Q ss_pred             ECCCCCEEEEEeC----------CCeEEEEEcCC-ceeEeeccC-------CCCEEEEEeCCCCCEEEEee-C-CCcEEE
Q 008496          282 WNGEGTLLATGSY----------DGQARIWSTNG-DLKCTLSKH-------KGPIFSLKWNKKGDYLLTGS-C-DKTAIV  341 (563)
Q Consensus       282 ~s~~g~~l~sg~~----------dg~i~vw~~~~-~~~~~~~~h-------~~~V~~l~~~~~~~~l~s~s-~-D~~v~i  341 (563)
                      +||||+.|.++..          +..|.+||... +....+.--       ......++++|+|++|+... . +..|.+
T Consensus        53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~V  132 (352)
T TIGR02658        53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGV  132 (352)
T ss_pred             ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEE
Confidence            8999998888766          68999999764 344334321       11234678999999998766 3 689999


Q ss_pred             EECCCCceeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcce-----eeecCCCcce-eEEEECC-CCCEEE
Q 008496          342 WDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPI-----KTFAGHQGEV-NCVKWDP-TGSLLA  414 (563)
Q Consensus       342 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~-----~~~~~h~~~i-~~~~~~~-~~~~la  414 (563)
                      .|+.+++.+..+.... ...-+.+.+.. |..-+.|+......++.....     ..|.+-...+ ..-.|.+ +|+++.
T Consensus       133 vD~~~~kvv~ei~vp~-~~~vy~t~e~~-~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~  210 (352)
T TIGR02658       133 VDLEGKAFVRMMDVPD-CYHIFPTANDT-FFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVW  210 (352)
T ss_pred             EECCCCcEEEEEeCCC-CcEEEEecCCc-cEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEE
Confidence            9999999888776533 22222222222 223334444433333221111     1111100000 0013345 788776


Q ss_pred             EEeCCCcEEEEeCCCCce-----eeeecc-------cCCCEEEEEEccCCCCCCCCCCcEEEEEEeC--------CCeEE
Q 008496          415 SCSDDVTAKIWNMKQDKY-----VHDLRE-------HSKEIYTIRWSPTGSGTNNPNQQLILASASF--------DSTVK  474 (563)
Q Consensus       415 s~s~dg~i~iwd~~~~~~-----~~~~~~-------~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~--------dg~i~  474 (563)
                      .... |+|.+.|+.....     ...+..       ..+.+.-++++|++.       .++++.-..        .+.|.
T Consensus       211 vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~-------~lyV~~~~~~~~thk~~~~~V~  282 (352)
T TIGR02658       211 PTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARD-------RIYLLADQRAKWTHKTASRFLF  282 (352)
T ss_pred             EecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCC-------EEEEEecCCccccccCCCCEEE
Confidence            6665 9999999644322     211111       111122255555543       233322111        25799


Q ss_pred             EEeCCCCeEEEEecCCCCCEEEEEEcCCCC-EEEEEe-CCCcEEEEecCCCeeEEEEec
Q 008496          475 LWDVELGKLLYSLNGHREPVYSLAFSPTGE-YLASGS-LDKSMHIWSLKEGKIVKTYTG  531 (563)
Q Consensus       475 iwd~~~~~~~~~~~~h~~~i~~l~~spdg~-~lasgs-~dg~v~iw~~~~~~~~~~~~~  531 (563)
                      ++|..+++.+..+.- ...+..++|||||+ +|.+.. .++.|.++|+.+++.+++...
T Consensus       283 ViD~~t~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i~~  340 (352)
T TIGR02658       283 VVDAKTGKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSVNQ  340 (352)
T ss_pred             EEECCCCeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeeecc
Confidence            999999999988763 34789999999999 777665 578899999999999998743

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions

Probab=99.21  E-value=2.6e-12  Score=73.32  Aligned_cols=27  Identities=44%  Similarity=0.642  Sum_probs=24.7

Q ss_pred             cchhhhhHHHHHhcCCceehhcccccc
Q 008496            7 EELNYLVFRYLQESGLLHSAFVLGYEA   33 (563)
Q Consensus         7 ~evN~Li~rYlqE~g~~~sA~~~~~E~   33 (563)
                      ++||+|||+||+++||.+||.+|.+|+
T Consensus         1 ~~Ln~lI~~YL~~~Gy~~tA~~f~~Ea   27 (27)
T PF08513_consen    1 EELNQLIYDYLVENGYKETAKAFAKEA   27 (27)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHCCcHHHHHHHHhcC
Confidence            589999999999999999999999986

The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B.

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.19  E-value=1.3e-10  Score=126.75  Aligned_cols=222  Identities=17%  Similarity=0.291  Sum_probs=164.6

Q ss_pred             CCCEEEEEeCCCeEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeeccc-CeEEE
Q 008496          285 EGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSG-PTLDV  363 (563)
Q Consensus       285 ~g~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~-~~~~~  363 (563)
                      .++.+.....++...-|...+.-. .+..+-..|.++.-+|...+-+||+.||.|++|....+..+-.+..... .+...
T Consensus      2179 ~s~~~~~~n~~~~~~tq~~~~~~~-~~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~ 2257 (2439)
T KOG1064|consen 2179 FSNRFTPSNLPWLGSTQTSRGASV-MIKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRS 2257 (2439)
T ss_pred             ccccCCcccCCccccceeccccee-EeecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhh
Confidence            344555555566666665544322 2344556788888899999999999999999998777666555543322 22222


Q ss_pred             ec-CCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEe---CCCcEEEEeCCC---Cceeeee
Q 008496          364 DW-RNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCS---DDVTAKIWNMKQ---DKYVHDL  436 (563)
Q Consensus       364 ~~-~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s---~dg~i~iwd~~~---~~~~~~~  436 (563)
                      .+ .....|..+..||.+.+|.+. .+|......|....+...|-.  .++++++   +++.+.+||..-   ..+++  
T Consensus      2258 ~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~-- 2332 (2439)
T KOG1064|consen 2258 RFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH-- 2332 (2439)
T ss_pred             hhcccCCceeeeccCCceeecccC-CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee--
Confidence            23 345678889999999999987 678888888988888887764  6677654   478899999642   22344  


Q ss_pred             cccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEE
Q 008496          437 REHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMH  516 (563)
Q Consensus       437 ~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~  516 (563)
                      ..|.+..+++++.|...         +|+||+.+|.|++||++..++++.+..         +. ...++++|+..|.|+
T Consensus      2333 ~~H~~gaT~l~~~P~~q---------llisggr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ik 2393 (2439)
T KOG1064|consen 2333 TCHDGGATVLAYAPKHQ---------LLISGGRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIK 2393 (2439)
T ss_pred             eecCCCceEEEEcCcce---------EEEecCCcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceE
Confidence            68999999999999754         789999999999999998777665543         34 567899999999999


Q ss_pred             EEecCCCeeEEEEec
Q 008496          517 IWSLKEGKIVKTYTG  531 (563)
Q Consensus       517 iw~~~~~~~~~~~~~  531 (563)
                      ||++..-.+++++..
T Consensus      2394 Iw~~s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2394 IWRLSEFGLLHTFPS 2408 (2439)
T ss_pred             EEEccccchhhcCch
Confidence            999998888887764

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.18  E-value=4.4e-09  Score=94.80  Aligned_cols=250  Identities=19%  Similarity=0.271  Sum_probs=159.9

Q ss_pred             CCCceEEEEECC---CCC-EEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEE
Q 008496          214 HTSEVCACAWSP---AGS-LLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLL  289 (563)
Q Consensus       214 h~~~V~~~~~sp---~~~-~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l  289 (563)
                      -++.++.+.|.-   +|. .|+-+-.+|.|.++.......          ...++.+..... ....-.++.|++.+..+
T Consensus        68 dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~s----------s~~L~~ls~~ki-~~~~~lslD~~~~~~~i  136 (339)
T KOG0280|consen   68 DTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDES----------SVHLRGLSSKKI-SVVEALSLDISTSGTKI  136 (339)
T ss_pred             cccccceeeeeeccCCccceeeeccccceEEEEeecccee----------eeeecccchhhh-hheeeeEEEeeccCceE
Confidence            345577777764   344 566667788888887543211          001111111000 01124678999999999


Q ss_pred             EEEeCCCeEEEEE-cCCceeE--eeccCCCCEEEEEeCCCC-CEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEec
Q 008496          290 ATGSYDGQARIWS-TNGDLKC--TLSKHKGPIFSLKWNKKG-DYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDW  365 (563)
Q Consensus       290 ~sg~~dg~i~vw~-~~~~~~~--~~~~h~~~V~~l~~~~~~-~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~  365 (563)
                      +++..+|.+.+-+ ....+..  ....|.-+.+..+|+... +.+++|+.|+.+..||++...   .+            
T Consensus       137 ~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~---~~------------  201 (339)
T KOG0280|consen  137 FVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPK---TF------------  201 (339)
T ss_pred             EEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCc---ce------------
Confidence            9999999998544 3344433  678999999999998654 578899999999999998221   11            


Q ss_pred             CCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECC-CCCEEEEEeCCCcEEEEeCCC-CceeeeecccCCCE
Q 008496          366 RNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDP-TGSLLASCSDDVTAKIWNMKQ-DKYVHDLREHSKEI  443 (563)
Q Consensus       366 ~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~-~~~~las~s~dg~i~iwd~~~-~~~~~~~~~~~~~i  443 (563)
                                      +|.        .-+-|...|.++.-+| ...+|+||+.|-.|++||.++ ++++..- .-.+.|
T Consensus       202 ----------------i~~--------n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~-~v~GGV  256 (339)
T KOG0280|consen  202 ----------------IWH--------NSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKA-KVGGGV  256 (339)
T ss_pred             ----------------eee--------cceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccC-ccccce
Confidence                            110        0122666788887776 477899999999999999984 4554432 234789


Q ss_pred             EEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC--e---EEEEecCCCCCEEEEEEcCCCCEEEEEe-CCCcEE-
Q 008496          444 YTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG--K---LLYSLNGHREPVYSLAFSPTGEYLASGS-LDKSMH-  516 (563)
Q Consensus       444 ~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~--~---~~~~~~~h~~~i~~l~~spdg~~lasgs-~dg~v~-  516 (563)
                      ..+.++|...       ..+|+++-..| .+|-+...+  +   .....+.|.+-++...|..-..+|||++ .|+.++ 
T Consensus       257 WRi~~~p~~~-------~~lL~~CMh~G-~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~  328 (339)
T KOG0280|consen  257 WRIKHHPEIF-------HRLLAACMHNG-AKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQ  328 (339)
T ss_pred             EEEEecchhh-------hHHHHHHHhcC-ceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceee
Confidence            9999998653       12344444443 666666543  2   3445566777677777754456789876 466644 


Q ss_pred             EEecCC
Q 008496          517 IWSLKE  522 (563)
Q Consensus       517 iw~~~~  522 (563)
                      +|-.-+
T Consensus       329 ~Wl~~t  334 (339)
T KOG0280|consen  329 LWLHIT  334 (339)
T ss_pred             eeeecc
Confidence            665433

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.13  E-value=9e-11  Score=113.72  Aligned_cols=182  Identities=21%  Similarity=0.369  Sum_probs=130.5

Q ss_pred             eEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCC
Q 008496          308 KCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGE  387 (563)
Q Consensus       308 ~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~  387 (563)
                      .+.+.+|+..|..+.--.+.+.+++++.|++|++|.++...                            |      .+++
T Consensus       728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~Eg----------------------------D------~~~t  773 (1034)
T KOG4190|consen  728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEG----------------------------D------EIGT  773 (1034)
T ss_pred             eecccCcHHHhHHHHhcccccceeeccCCceEEEEEecccc----------------------------C------cccc
Confidence            35677898888887766777889999999999999876431                            0      0112


Q ss_pred             CcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecc--cCCCEEEEEEccCCCCCCCCCCcEEEE
Q 008496          388 NRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLRE--HSKEIYTIRWSPTGSGTNNPNQQLILA  465 (563)
Q Consensus       388 ~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~--~~~~i~~~~~~p~~~~~~~~~~~~~l~  465 (563)
                      ..+..++..|..+|..+.|-.+.+++++|  ||.|.+||.--++++..+..  ..+.+..+..-|+      -+...+++
T Consensus       774 saCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~n------v~~~iliA  845 (1034)
T KOG4190|consen  774 SACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLEN------VDRHILIA  845 (1034)
T ss_pred             ceeeeEhhhccCcccceeeeeccceeeec--cCcceeecccccchhHhhhcCcccCCCceeEeccc------Ccchheee
Confidence            23445778899999999998888888766  88999999776665443221  1112222222222      12234566


Q ss_pred             EEeCCCeEEEEeCCCCeEEEEec-----CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEec
Q 008496          466 SASFDSTVKLWDVELGKLLYSLN-----GHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTG  531 (563)
Q Consensus       466 s~s~dg~i~iwd~~~~~~~~~~~-----~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~  531 (563)
                      .++...+|+++|.+.+.-...++     +....+.+++..|.|+++|.|-..|.|.+.|.++|+++..|..
T Consensus       846 gcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrp  916 (1034)
T KOG4190|consen  846 GCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRP  916 (1034)
T ss_pred             eccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCc
Confidence            66899999999999876554443     2234588999999999999999999999999999999887754

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.12  E-value=1.1e-06  Score=85.54  Aligned_cols=245  Identities=11%  Similarity=0.065  Sum_probs=141.5

Q ss_pred             CeEEEEEcCC-ceeEeeccCCCCEEEEEeCCCCCEEEEeeC----------CCcEEEEECCCCceeEEeeecccCe----
Q 008496          296 GQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSC----------DKTAIVWDVKTEEWKQQFEFHSGPT----  360 (563)
Q Consensus       296 g~i~vw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~----------D~~v~iwd~~~~~~~~~~~~~~~~~----  360 (563)
                      +.|.+.|... +.+..+..-..|-. + ++|+|+.|+.+..          +..|.+||+.+.+....+.....|-    
T Consensus        27 ~~v~ViD~~~~~v~g~i~~G~~P~~-~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~  104 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGMTDGGFLPNP-V-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVG  104 (352)
T ss_pred             ceEEEEECCCCEEEEEEEccCCCce-e-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhcc
Confidence            7888888764 44444543334432 4 8999999887766          6799999999999888776533211    


Q ss_pred             ---EEEecCCCc--eEEEE-eCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEE--------eCCCcEEEEe
Q 008496          361 ---LDVDWRNNV--SFATS-STDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASC--------SDDVTAKIWN  426 (563)
Q Consensus       361 ---~~~~~~~~~--~~~~~-~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~--------s~dg~i~iwd  426 (563)
                         ..+....+.  .++.- ..++.+.+.|+...+.+..+.-           |++.++...        +.||......
T Consensus       105 ~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~v-----------p~~~~vy~t~e~~~~~~~~Dg~~~~v~  173 (352)
T TIGR02658       105 TYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDV-----------PDCYHIFPTANDTFFMHCRDGSLAKVG  173 (352)
T ss_pred             CccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeC-----------CCCcEEEEecCCccEEEeecCceEEEE
Confidence               122233332  23333 2367777777777766655432           333333322        2233332222


Q ss_pred             CCCCceee--eec-ccC--CCEEE-EEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC-----eEEEEecC------
Q 008496          427 MKQDKYVH--DLR-EHS--KEIYT-IRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG-----KLLYSLNG------  489 (563)
Q Consensus       427 ~~~~~~~~--~~~-~~~--~~i~~-~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~-----~~~~~~~~------  489 (563)
                      +.......  ... .+.  .++.. -.+.+       .++..+.+|.  .|+|.+-|+...     +....+..      
T Consensus       174 ~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~-------~dg~~~~vs~--eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~  244 (352)
T TIGR02658       174 YGTKGNPKIKPTEVFHPEDEYLINHPAYSN-------KSGRLVWPTY--TGKIFQIDLSSGDAKFLPAIEAFTEAEKADG  244 (352)
T ss_pred             ecCCCceEEeeeeeecCCccccccCCceEc-------CCCcEEEEec--CCeEEEEecCCCcceecceeeeccccccccc
Confidence            21111110  000 000  00000 01122       1223344433  399999995432     22222211      


Q ss_pred             -CCCCEEEEEEcCCCCEEEEEeC----------CCcEEEEecCCCeeEEEEecCCCEEEEEEcCCCC-EEEEEE-CCCeE
Q 008496          490 -HREPVYSLAFSPTGEYLASGSL----------DKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGD-KIAACF-ANHTV  556 (563)
Q Consensus       490 -h~~~i~~l~~spdg~~lasgs~----------dg~v~iw~~~~~~~~~~~~~~~~i~~l~w~~~g~-~la~~~-~~~~v  556 (563)
                       ..+.+.-++++|+|+.+..+..          .+.|.++|..+++.+..+.....+..++++|||+ +|.+.. .++.|
T Consensus       245 wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~V  324 (352)
T TIGR02658       245 WRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALSTGDKTL  324 (352)
T ss_pred             cCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCCCcE
Confidence             1223445999999988876431          2579999999999999998878899999999999 777664 57789


Q ss_pred             EEEEee
Q 008496          557 CVLDFR  562 (563)
Q Consensus       557 ~v~~~~  562 (563)
                      .|+|..
T Consensus       325 sViD~~  330 (352)
T TIGR02658       325 YIFDAE  330 (352)
T ss_pred             EEEECc
Confidence            999974

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.11  E-value=6.4e-08  Score=108.65  Aligned_cols=265  Identities=11%  Similarity=0.107  Sum_probs=157.7

Q ss_pred             EEEECCC-CCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecc-cccCCCCeEEEEECCCCCEEEEEe-CCC
Q 008496          220 ACAWSPA-GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGR-TNEKSKDVTTLDWNGEGTLLATGS-YDG  296 (563)
Q Consensus       220 ~~~~sp~-~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~V~~l~~s~~g~~l~sg~-~dg  296 (563)
                      .+++++. +.++++-+..+.|++||............+....     ..+. ....-.....++++++++.|+++. .++
T Consensus       572 gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~-----~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~  646 (1057)
T PLN02919        572 KLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGL-----RDGSFEDATFNRPQGLAYNAKKNLLYVADTENH  646 (1057)
T ss_pred             eEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCC-----CCCchhccccCCCcEEEEeCCCCEEEEEeCCCc
Confidence            5788875 6677787888999999975321100000000000     0000 000112357789999888665554 457


Q ss_pred             eEEEEEcCCceeEeeccC-----------------CCCEEEEEeCC-CCCEEEEeeCCCcEEEEECCCCceeEEeeeccc
Q 008496          297 QARIWSTNGDLKCTLSKH-----------------KGPIFSLKWNK-KGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSG  358 (563)
Q Consensus       297 ~i~vw~~~~~~~~~~~~h-----------------~~~V~~l~~~~-~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~  358 (563)
                      .|++++..+....++.+-                 -..-+.++++| ++..+++.+.++.|++||..++... .+.    
T Consensus       647 ~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~----  721 (1057)
T PLN02919        647 ALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFS----  721 (1057)
T ss_pred             eEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEe----
Confidence            899999766555444221                 01236789999 5556677777899999998765421 111    


Q ss_pred             CeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCC-EEEEEeCCCcEEEEeCCCCceeeeec
Q 008496          359 PTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGS-LLASCSDDVTAKIWNMKQDKYVHDLR  437 (563)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~-~las~s~dg~i~iwd~~~~~~~~~~~  437 (563)
                                       .++.....  .....   ....-.....++++|+++ ++++-+.++.|++||+.++.......
T Consensus       722 -----------------G~G~~~~~--~g~~~---~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~g  779 (1057)
T PLN02919        722 -----------------GDGYERNL--NGSSG---TSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAG  779 (1057)
T ss_pred             -----------------cCCccccC--CCCcc---ccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEe
Confidence                             01100000  00000   000112356799999988 55667778999999988764321100


Q ss_pred             c-------------c--------CCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEec--------
Q 008496          438 E-------------H--------SKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLN--------  488 (563)
Q Consensus       438 ~-------------~--------~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--------  488 (563)
                      +             .        -..-..++++++|.         ++++-+.++.|++||..++.......        
T Consensus       780 g~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~---------LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~d  850 (1057)
T PLN02919        780 GDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQ---------IYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKD  850 (1057)
T ss_pred             cccccCcccccccCCCCchhhhhccCCceeeEeCCCc---------EEEEECCCCEEEEEECCCCeEEEEeccCCcCCCC
Confidence            0             0        00123555555543         56777889999999998776543221        


Q ss_pred             -----CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCee
Q 008496          489 -----GHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKI  525 (563)
Q Consensus       489 -----~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~  525 (563)
                           +.-.....|+++++|+.+++-+.+++|++||+.+++.
T Consensus       851 G~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~  892 (1057)
T PLN02919        851 GKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA  892 (1057)
T ss_pred             CcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence                 1112457899999999999989999999999998865

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.08  E-value=1.7e-07  Score=94.98  Aligned_cols=201  Identities=13%  Similarity=0.070  Sum_probs=120.7

Q ss_pred             eEEEEEcCCceeEeeccCCCCEEEEEeCCCCCE-EEEeeCC---CcEEEEECCCCceeEEeeecccCeEEEecCCCceEE
Q 008496          297 QARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDY-LLTGSCD---KTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFA  372 (563)
Q Consensus       297 ~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~-l~s~s~D---~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  372 (563)
                      .|.+-|.+|.....+.... .+...+|+|+|+. ++..+.+   ..|.++|+.+++....                    
T Consensus       170 ~l~~~d~dg~~~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~l--------------------  228 (419)
T PRK04043        170 NIVLADYTLTYQKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKI--------------------  228 (419)
T ss_pred             eEEEECCCCCceeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEE--------------------
Confidence            4555556665444444443 7888999999985 5543333   3466667666542211                    


Q ss_pred             EEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEE-EEeCC--CcEEEEeCCCCceeeeecccCCCEEEEEEc
Q 008496          373 TSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLA-SCSDD--VTAKIWNMKQDKYVHDLREHSKEIYTIRWS  449 (563)
Q Consensus       373 ~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~la-s~s~d--g~i~iwd~~~~~~~~~~~~~~~~i~~~~~~  449 (563)
                                            ....+......|+|||+.|+ +.+.+  ..|.++|+.++.. ..+..+........|+
T Consensus       229 ----------------------t~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~-~~LT~~~~~d~~p~~S  285 (419)
T PRK04043        229 ----------------------ASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTL-TQITNYPGIDVNGNFV  285 (419)
T ss_pred             ----------------------ecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcE-EEcccCCCccCccEEC
Confidence                                  11223344577999998665 44434  4567778777653 3344343333456799


Q ss_pred             cCCCCCCCCCCcEEEEEEeCCC--eEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCC---------CcEEEE
Q 008496          450 PTGSGTNNPNQQLILASASFDS--TVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLD---------KSMHIW  518 (563)
Q Consensus       450 p~~~~~~~~~~~~~l~s~s~dg--~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~d---------g~v~iw  518 (563)
                      |+|.        .++.+....+  .|.+.|+..++...... ...  ....|||||++|+..+..         ..|.+.
T Consensus       286 PDG~--------~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~-~g~--~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~  354 (419)
T PRK04043        286 EDDK--------RIVFVSDRLGYPNIFMKKLNSGSVEQVVF-HGK--NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLI  354 (419)
T ss_pred             CCCC--------EEEEEECCCCCceEEEEECCCCCeEeCcc-CCC--cCceECCCCCEEEEEEcCCCcccCCCCcEEEEE
Confidence            9885        2344443333  57778888776532221 111  234899999998866543         368888


Q ss_pred             ecCCCeeEEEEecCCCEEEEEEcCCCCEEEEEECC
Q 008496          519 SLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFAN  553 (563)
Q Consensus       519 ~~~~~~~~~~~~~~~~i~~l~w~~~g~~la~~~~~  553 (563)
                      |+.++... .+...+.....+|+|||+.|+.....
T Consensus       355 d~~~g~~~-~LT~~~~~~~p~~SPDG~~I~f~~~~  388 (419)
T PRK04043        355 STNSDYIR-RLTANGVNQFPRFSSDGGSIMFIKYL  388 (419)
T ss_pred             ECCCCCeE-ECCCCCCcCCeEECCCCCEEEEEEcc
Confidence            88887643 33333333468999999998877543

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.07  E-value=1.6e-06  Score=81.16  Aligned_cols=258  Identities=15%  Similarity=0.212  Sum_probs=161.7

Q ss_pred             CCeEEEEEcCC---ce-eEeeccCCCCEEEEEeCCCCCEEEEeeCC---CcEEEEECC--CCce--eEEeeecccCeEEE
Q 008496          295 DGQARIWSTNG---DL-KCTLSKHKGPIFSLKWNKKGDYLLTGSCD---KTAIVWDVK--TEEW--KQQFEFHSGPTLDV  363 (563)
Q Consensus       295 dg~i~vw~~~~---~~-~~~~~~h~~~V~~l~~~~~~~~l~s~s~D---~~v~iwd~~--~~~~--~~~~~~~~~~~~~~  363 (563)
                      +..|++|+++.   .+ ...+..+.+.++-|+|+|++++|.++..+   |.|..|.+.  .|.+  +........+..-+
T Consensus        15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv   94 (346)
T COG2706          15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV   94 (346)
T ss_pred             CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence            46799998763   22 12344566778889999999999988765   566665544  3543  22222223333334


Q ss_pred             ecCCC--ceEEEEeCCCeEEEEEcCCCcc---eeeecCCCcc----------eeEEEECCCCCEEEEEeC-CCcEEEEeC
Q 008496          364 DWRNN--VSFATSSTDNMIYVCKIGENRP---IKTFAGHQGE----------VNCVKWDPTGSLLASCSD-DVTAKIWNM  427 (563)
Q Consensus       364 ~~~~~--~~~~~~~~d~~i~~~~~~~~~~---~~~~~~h~~~----------i~~~~~~~~~~~las~s~-dg~i~iwd~  427 (563)
                      +...+  ..|.+.-..+.|.++.+.....   ......|.+.          +-+..+.|++++|+++.- --.|.+|++
T Consensus        95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~  174 (346)
T COG2706          95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDL  174 (346)
T ss_pred             EECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEc
Confidence            44444  3445555668899998865322   2122234443          778999999999988764 336889999


Q ss_pred             CCCceee----eecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC-eEEEEecC---------CCCC
Q 008496          428 KQDKYVH----DLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG-KLLYSLNG---------HREP  493 (563)
Q Consensus       428 ~~~~~~~----~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~---------h~~~  493 (563)
                      ..++...    .+ .....-..|.|+|+++        ...+..-.+++|-+|..... ..+..+..         -...
T Consensus       175 ~dg~L~~~~~~~v-~~G~GPRHi~FHpn~k--------~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~  245 (346)
T COG2706         175 DDGKLTPADPAEV-KPGAGPRHIVFHPNGK--------YAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNW  245 (346)
T ss_pred             ccCcccccccccc-CCCCCcceEEEcCCCc--------EEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCc
Confidence            8665422    12 2233346788888775        34556677899999998763 22222211         1234


Q ss_pred             EEEEEEcCCCCEEEEEeC-CCcEEEEecCC--Cee--EEEEecCCC-EEEEEEcCCCCEEEEEECCC-eEEEEEe
Q 008496          494 VYSLAFSPTGEYLASGSL-DKSMHIWSLKE--GKI--VKTYTGNGG-IFEVCWNKEGDKIAACFANH-TVCVLDF  561 (563)
Q Consensus       494 i~~l~~spdg~~lasgs~-dg~v~iw~~~~--~~~--~~~~~~~~~-i~~l~w~~~g~~la~~~~~~-~v~v~~~  561 (563)
                      ..+|..+|||+||.++.. ...|.+|.+..  |++  +......+. .-++.+++.|++|+++..++ .+.||-.
T Consensus       246 ~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~  320 (346)
T COG2706         246 AAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFER  320 (346)
T ss_pred             eeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEE
Confidence            678899999999987643 34788888754  332  222233333 56899999999999886644 5677654

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.03  E-value=1.1e-08  Score=97.27  Aligned_cols=267  Identities=16%  Similarity=0.274  Sum_probs=184.7

Q ss_pred             ECCCCCEEEEEeCCCeEEEEEcCC----ceeEeeccCCCCEEEEEeCCCCCEEEEeeC-CCcEEEEECCCCceeEEeeec
Q 008496          282 WNGEGTLLATGSYDGQARIWSTNG----DLKCTLSKHKGPIFSLKWNKKGDYLLTGSC-DKTAIVWDVKTEEWKQQFEFH  356 (563)
Q Consensus       282 ~s~~g~~l~sg~~dg~i~vw~~~~----~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~-D~~v~iwd~~~~~~~~~~~~~  356 (563)
                      +-...+++.+++.||.++.|....    .....+..|.+.|.+++.+.++-.+.|.+. |..++++|+.+-..+.-+...
T Consensus        16 ~~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~   95 (558)
T KOG0882|consen   16 FPTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLV   95 (558)
T ss_pred             eeehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccc
Confidence            334567999999999999998655    233345678889999999999998999766 999999998776544332221


Q ss_pred             ccCeEEEecCCC-----ceE-EEEeCCCeEEEEEcCCCc-ceeee-cCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCC
Q 008496          357 SGPTLDVDWRNN-----VSF-ATSSTDNMIYVCKIGENR-PIKTF-AGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMK  428 (563)
Q Consensus       357 ~~~~~~~~~~~~-----~~~-~~~~~d~~i~~~~~~~~~-~~~~~-~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~  428 (563)
                      .-| -.++|...     ..+ ++.-.++.+.++|-.... +...+ .-|..+|.++.+++.+..+++....|.|..|...
T Consensus        96 ~lP-g~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e  174 (558)
T KOG0882|consen   96 DLP-GFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAE  174 (558)
T ss_pred             cCC-CceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCC
Confidence            111 12334321     123 333456788888865443 33333 3488999999999999999999999999999876


Q ss_pred             C------Cceee---------eecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEec-----
Q 008496          429 Q------DKYVH---------DLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLN-----  488 (563)
Q Consensus       429 ~------~~~~~---------~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-----  488 (563)
                      .      .+...         .+........++.|+|++.         .+++-+.|..|++++..+|+++..+.     
T Consensus       175 ~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~---------qistl~~DrkVR~F~~KtGklvqeiDE~~t~  245 (558)
T KOG0882|consen  175 GPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGA---------QISTLNPDRKVRGFVFKTGKLVQEIDEVLTD  245 (558)
T ss_pred             CcccCccccccccccccchhhcccccccCccceEEccccC---------cccccCcccEEEEEEeccchhhhhhhccchh
Confidence            3      11111         1122334567899999886         46677789999999998887654332     


Q ss_pred             ---------------------------CCC-CCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEecCCCE-----
Q 008496          489 ---------------------------GHR-EPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGI-----  535 (563)
Q Consensus       489 ---------------------------~h~-~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~~~~i-----  535 (563)
                                                 .|. ..-+.+.|...|++|.-|+.=| |++.++.++.+++.+-....|     
T Consensus       246 ~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri~gk~e~ir~~~~  324 (558)
T KOG0882|consen  246 AQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVRILGKDEAIRFTRL  324 (558)
T ss_pred             hhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEEEeccchhhhhhhH
Confidence                                       111 2335688999999999999887 999999999988877321110     


Q ss_pred             ---------------------EEEEEcCCCCEEEEEECCCeEEEE
Q 008496          536 ---------------------FEVCWNKEGDKIAACFANHTVCVL  559 (563)
Q Consensus       536 ---------------------~~l~w~~~g~~la~~~~~~~v~v~  559 (563)
                                           ..+.+.+|-..+++++...+..++
T Consensus       325 sl~q~~~k~~~~~~~~~a~~np~~~~~~dpt~~c~a~kk~rfylf  369 (558)
T KOG0882|consen  325 SLYQGAQKSNLAALEVAASNNPLLEFQKDPTIVCTAFKKNRFYLF  369 (558)
T ss_pred             HHHhhhhhccchhhhhhhccCcccccCCCCeEEEeeeecceEEEE
Confidence                                 124467777788887776665544

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=99.02  E-value=3.6e-07  Score=97.58  Aligned_cols=273  Identities=12%  Similarity=0.214  Sum_probs=154.8

Q ss_pred             CCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEe
Q 008496          274 SKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQF  353 (563)
Q Consensus       274 ~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~  353 (563)
                      ...|.++.|-.++..++.+...|.|.+-|...........-.+.|.+++|+|++..++..+.++++.+-+- +...+...
T Consensus        68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~-~f~~i~E~  146 (1265)
T KOG1920|consen   68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTK-DFEPIAEK  146 (1265)
T ss_pred             CcceEEEEEecccceEEEEecCCcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEec-cccchhcc
Confidence            35799999999999999999999999998776655555556788999999999999998888888766431 11111100


Q ss_pred             e-----ecccCeEEEecCCCc-eEEEEeCCCeEEEEE-cCCCcceeeecCCCcceeEEEECCCCCEEEEE-----eCCCc
Q 008496          354 E-----FHSGPTLDVDWRNNV-SFATSSTDNMIYVCK-IGENRPIKTFAGHQGEVNCVKWDPTGSLLASC-----SDDVT  421 (563)
Q Consensus       354 ~-----~~~~~~~~~~~~~~~-~~~~~~~d~~i~~~~-~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~-----s~dg~  421 (563)
                      .     ...+....+.|.... .|- ++. |....-+ +...+......-|. .=++|.|--||.++|+.     .....
T Consensus       147 ~L~~d~~~~sk~v~VGwGrkeTqfr-gs~-gr~~~~~~~~~ek~~~~~~~~~-~~~~IsWRgDg~~fAVs~~~~~~~~Rk  223 (1265)
T KOG1920|consen  147 PLDADDERKSKFVNVGWGRKETQFR-GSE-GRQAARQKIEKEKALEQIEQDD-HKTSISWRGDGEYFAVSFVESETGTRK  223 (1265)
T ss_pred             ccccccccccccceecccccceeee-cch-hhhcccccccccccccchhhcc-CCceEEEccCCcEEEEEEEeccCCcee
Confidence            0     011122334442211 111 000 0000000 00000000001122 22479999999999883     33378


Q ss_pred             EEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEE---eCCCeEEEEeCC---CCeEEEEecCCCCCEE
Q 008496          422 AKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASA---SFDSTVKLWDVE---LGKLLYSLNGHREPVY  495 (563)
Q Consensus       422 i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~---s~dg~i~iwd~~---~~~~~~~~~~h~~~i~  495 (563)
                      |+|||-. +..-..-..-.+.-.+++|-|.|.         ++++-   ..|+.|.+|.-.   -|.....+.....+|.
T Consensus       224 irV~drE-g~Lns~se~~~~l~~~LsWkPsgs---------~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve  293 (1265)
T KOG1920|consen  224 IRVYDRE-GALNSTSEPVEGLQHSLSWKPSGS---------LIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVE  293 (1265)
T ss_pred             EEEeccc-chhhcccCcccccccceeecCCCC---------eEeeeeecCCCCcEEEEecCCccccccccCCcccccchh
Confidence            9999966 322111111223346789999875         44442   345678888632   2222222233344589


Q ss_pred             EEEEcCCCCEEEE---EeCCCcEEEEecCCCe--eEEEEecCCCEEEEEEcCCCC-EEEEEECCCeEEEEEe
Q 008496          496 SLAFSPTGEYLAS---GSLDKSMHIWSLKEGK--IVKTYTGNGGIFEVCWNKEGD-KIAACFANHTVCVLDF  561 (563)
Q Consensus       496 ~l~~spdg~~las---gs~dg~v~iw~~~~~~--~~~~~~~~~~i~~l~w~~~g~-~la~~~~~~~v~v~~~  561 (563)
                      .++|+.++..||+   ......|.+|-+.+..  +.+.+.-.... -+.|+|.-. .|.+-..+|...|+||
T Consensus       294 ~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~~-~~~W~p~~~~~L~v~~~sG~~~v~~~  364 (1265)
T KOG1920|consen  294 ELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQFSQKA-LLMWDPVTEKTLHVLRESGQRLVRDF  364 (1265)
T ss_pred             eeeecCCCCceeeeecccccceEEEEEecCeEEEEEEEEeccccc-cccccCCCceeEEEEecCCcEEEEEE
Confidence            9999999999997   4445569999988754  22222221111 167777432 2332224556656555

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.01  E-value=5.9e-09  Score=104.75  Aligned_cols=291  Identities=20%  Similarity=0.334  Sum_probs=182.1

Q ss_pred             CceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCC--CEEEEEe
Q 008496          216 SEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG--TLLATGS  293 (563)
Q Consensus       216 ~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g--~~l~sg~  293 (563)
                      .++.++..+|.|+-+|.++.-|.. +-|+.+.-.       |  ...+.+..      .-.|-.+.|++..  .+-++..
T Consensus        25 ~~~~a~si~p~grdi~lAsr~gl~-i~dld~p~~-------p--pr~l~h~t------pw~vad~qws~h~a~~~wiVst   88 (1081)
T KOG0309|consen   25 GGFNAVSINPSGRDIVLASRQGLY-IIDLDDPFT-------P--PRWLHHIT------PWQVADVQWSPHPAKPYWIVST   88 (1081)
T ss_pred             CcccceeeccccchhhhhhhcCeE-EEeccCCCC-------C--ceeeeccC------cchhcceecccCCCCceeEEec
Confidence            567889999999988888776644 345543210       0  01122211      1235666777643  3444444


Q ss_pred             CCCeEEEEEcC----CceeEeeccCCCCEEEEEeCCCC-CEEEEeeCCCcEEEEECCCCce-eEEeeecccCeEEEecCC
Q 008496          294 YDGQARIWSTN----GDLKCTLSKHKGPIFSLKWNKKG-DYLLTGSCDKTAIVWDVKTEEW-KQQFEFHSGPTLDVDWRN  367 (563)
Q Consensus       294 ~dg~i~vw~~~----~~~~~~~~~h~~~V~~l~~~~~~-~~l~s~s~D~~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~  367 (563)
                      ......+|+..    ..+...+.+|...|+.+.|+|+. ..+++++.|-.+..||+++... ...+.........+.|..
T Consensus        89 s~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwny  168 (1081)
T KOG0309|consen   89 SNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNY  168 (1081)
T ss_pred             CcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecc
Confidence            55566788753    23445678999999999999976 4678999999999999987542 222322223334455643


Q ss_pred             C-ceEEEEeCCCeEEEEEcCCC-cceeeecCCCcceeEEEECCC-CCEEEEEeCCCcEEEEeCCCCcee-eeecccCCCE
Q 008496          368 N-VSFATSSTDNMIYVCKIGEN-RPIKTFAGHQGEVNCVKWDPT-GSLLASCSDDVTAKIWNMKQDKYV-HDLREHSKEI  443 (563)
Q Consensus       368 ~-~~~~~~~~d~~i~~~~~~~~-~~~~~~~~h~~~i~~~~~~~~-~~~las~s~dg~i~iwd~~~~~~~-~~~~~~~~~i  443 (563)
                      . ....+++-.+.|++|+.+.+ .|...+++|...|+.++|+.- ...+.+++.|++++.||....... .....-..+|
T Consensus       169 k~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~pi  248 (1081)
T KOG0309|consen  169 KDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPI  248 (1081)
T ss_pred             cCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcc
Confidence            2 23344555677999999765 578889999999999998753 356789999999999997643211 1111233456


Q ss_pred             EEEEEccCCCCCCC-CC-CcEEEEEEeCCCeEEEEeCCC-CeEEEEecCCCCCEEEEEEcCCC----------CEEEEEe
Q 008496          444 YTIRWSPTGSGTNN-PN-QQLILASASFDSTVKLWDVEL-GKLLYSLNGHREPVYSLAFSPTG----------EYLASGS  510 (563)
Q Consensus       444 ~~~~~~p~~~~~~~-~~-~~~~l~s~s~dg~i~iwd~~~-~~~~~~~~~h~~~i~~l~~spdg----------~~lasgs  510 (563)
                      ..-++-|-|.+... |. +..++.---.+.....|++.+ .+.++++.||...|...-|-..+          --|+|=|
T Consensus       249 w~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWS  328 (1081)
T KOG0309|consen  249 WRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWS  328 (1081)
T ss_pred             eeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEee
Confidence            66666666543210 00 000111111123334455443 46789999999888766664322          2489999


Q ss_pred             CCCcEEEEecCC
Q 008496          511 LDKSMHIWSLKE  522 (563)
Q Consensus       511 ~dg~v~iw~~~~  522 (563)
                      .|..+++|-+.+
T Consensus       329 kD~~lrlWpI~~  340 (1081)
T KOG0309|consen  329 KDQTLRLWPIDS  340 (1081)
T ss_pred             cCCceEeeeccH
Confidence            999999998764

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=99.01  E-value=7.8e-07  Score=80.80  Aligned_cols=42  Identities=17%  Similarity=0.544  Sum_probs=36.8

Q ss_pred             CCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEec
Q 008496          490 HREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTG  531 (563)
Q Consensus       490 h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~  531 (563)
                      ....|..|+.||||+.||+...+|.|.+|++..-++.+.+..
T Consensus       228 ~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~  269 (282)
T PF15492_consen  228 EQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQ  269 (282)
T ss_pred             CCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccch
Confidence            456799999999999999999999999999998777776643

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.00  E-value=3.6e-07  Score=92.40  Aligned_cols=259  Identities=10%  Similarity=0.053  Sum_probs=157.1

Q ss_pred             CCEEEEEeCCCeEEEEEc-CCceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEe
Q 008496          286 GTLLATGSYDGQARIWST-NGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVD  364 (563)
Q Consensus       286 g~~l~sg~~dg~i~vw~~-~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~  364 (563)
                      +..+++++.+|.+..+|. +|+......-......+..  .++..++.++.++.+..+|..+++.+-....... +....
T Consensus        65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~--v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~-~~~~p  141 (377)
T TIGR03300        65 GGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVG--ADGGLVFVGTEKGEVIALDAEDGKELWRAKLSSE-VLSPP  141 (377)
T ss_pred             CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceE--EcCCEEEEEcCCCEEEEEECCCCcEeeeeccCce-eecCC
Confidence            567888888999999995 5666544332221111111  2467888889999999999999887655443221 11110


Q ss_pred             cCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcce-----eEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeccc
Q 008496          365 WRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEV-----NCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREH  439 (563)
Q Consensus       365 ~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i-----~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~  439 (563)
                      -..+..++....++.++.++..+++.+-.+......+     .+....  +..++.++.++.+..+|..+++.+......
T Consensus       142 ~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~~~W~~~~~  219 (377)
T TIGR03300       142 LVANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--DGGVLVGFAGGKLVALDLQTGQPLWEQRVA  219 (377)
T ss_pred             EEECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--CCEEEEECCCCEEEEEEccCCCEeeeeccc
Confidence            1123455666778999999988777655543322111     111111  246677888899999999888765432211


Q ss_pred             CC----CEE---EEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCC
Q 008496          440 SK----EIY---TIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLD  512 (563)
Q Consensus       440 ~~----~i~---~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~d  512 (563)
                      ..    .+.   .+.-+|.     ..++  .+..++.+|.++.||..+|+.++..... . .....  .++..+..++.|
T Consensus       220 ~~~g~~~~~~~~~~~~~p~-----~~~~--~vy~~~~~g~l~a~d~~tG~~~W~~~~~-~-~~~p~--~~~~~vyv~~~~  288 (377)
T TIGR03300       220 LPKGRTELERLVDVDGDPV-----VDGG--QVYAVSYQGRVAALDLRSGRVLWKRDAS-S-YQGPA--VDDNRLYVTDAD  288 (377)
T ss_pred             cCCCCCchhhhhccCCccE-----EECC--EEEEEEcCCEEEEEECCCCcEEEeeccC-C-ccCce--EeCCEEEEECCC
Confidence            00    000   0000010     0011  4556778999999999999988876521 1 11222  246678888899


Q ss_pred             CcEEEEecCCCeeEEEEec-CCC-EEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496          513 KSMHIWSLKEGKIVKTYTG-NGG-IFEVCWNKEGDKIAACFANHTVCVLDFR  562 (563)
Q Consensus       513 g~v~iw~~~~~~~~~~~~~-~~~-i~~l~w~~~g~~la~~~~~~~v~v~~~~  562 (563)
                      |.|..+|..+|+.+..+.. ... ......  .|.+|.++..+|.+.++|.+
T Consensus       289 G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~  338 (377)
T TIGR03300       289 GVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSRE  338 (377)
T ss_pred             CeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECC
Confidence            9999999999998876532 111 122222  46788888889999888753

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.97  E-value=3.5e-07  Score=87.87  Aligned_cols=214  Identities=14%  Similarity=0.204  Sum_probs=150.0

Q ss_pred             eCCCCCEEEEeeCCCcEEEEECCCCceeEEeeec-------ccCe--------EEEecCCCceEEEEeCCCeEEEEEcCC
Q 008496          323 WNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFH-------SGPT--------LDVDWRNNVSFATSSTDNMIYVCKIGE  387 (563)
Q Consensus       323 ~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~-------~~~~--------~~~~~~~~~~~~~~~~d~~i~~~~~~~  387 (563)
                      .+.+|+.++. +.-|.|.++|+.+..+.. +...       ..+.        -+....+...++..| .|..++.+...
T Consensus       274 ~nsDGkrIvF-q~~GdIylydP~td~lek-ldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VS-RGkaFi~~~~~  350 (668)
T COG4946         274 ANSDGKRIVF-QNAGDIYLYDPETDSLEK-LDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVS-RGKAFIMRPWD  350 (668)
T ss_pred             cCCCCcEEEE-ecCCcEEEeCCCcCccee-eecCCccccccccccccCHHHhhhhhccCCCcEEEEEe-cCcEEEECCCC
Confidence            3567888775 345789999988765433 1111       0000        011122233333333 34445555444


Q ss_pred             CcceeeecCCCcceeEEEECCCCCEEEEEeCCC-cEEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEE
Q 008496          388 NRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDV-TAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILAS  466 (563)
Q Consensus       388 ~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg-~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s  466 (563)
                      +-.++  .+|.+.|.-..+.-+++-++.|..|| .+-|+|..++.. ..+...-+.|.++..+|+|.         .++.
T Consensus       351 ~~~iq--v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~-kr~e~~lg~I~av~vs~dGK---------~~vv  418 (668)
T COG4946         351 GYSIQ--VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEV-KRIEKDLGNIEAVKVSPDGK---------KVVV  418 (668)
T ss_pred             CeeEE--cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceE-EEeeCCccceEEEEEcCCCc---------EEEE
Confidence            33332  36777788888888888889999999 899999888763 34555667899999999986         5777


Q ss_pred             EeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCC----cEEEEecCCCeeEEEEecCCCEEEEEEcC
Q 008496          467 ASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDK----SMHIWSLKEGKIVKTYTGNGGIFEVCWNK  542 (563)
Q Consensus       467 ~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg----~v~iw~~~~~~~~~~~~~~~~i~~l~w~~  542 (563)
                      +.....|-+.|+.+|.....-+...+-|+...|||++++||-+--+|    .|+++|+.++++....+..+-=++.+|+|
T Consensus       419 aNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~  498 (668)
T COG4946         419 ANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDP  498 (668)
T ss_pred             EcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCC
Confidence            77778888889999987655454556799999999999999776554    69999999999887766666567889999


Q ss_pred             CCCEEEEEE
Q 008496          543 EGDKIAACF  551 (563)
Q Consensus       543 ~g~~la~~~  551 (563)
                      ||++|-.-+
T Consensus       499 d~ryLYfLs  507 (668)
T COG4946         499 DGRYLYFLS  507 (668)
T ss_pred             CCcEEEEEe
Confidence            999877653

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.96  E-value=6.6e-06  Score=77.76  Aligned_cols=222  Identities=15%  Similarity=0.176  Sum_probs=144.7

Q ss_pred             EEEECC-CCCEEEEEeCCCeEEEEEcCCceeEeeccCCCCEEEEEeC-CCCCEEEEeeCCCcEEEEECCCCceeEEeeec
Q 008496          279 TLDWNG-EGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWN-KKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFH  356 (563)
Q Consensus       279 ~l~~s~-~g~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~-~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~  356 (563)
                      +..|.+ ++.++++-...+.|..|+..+.....+....  ..++.+. ++ ..|+.+..++ +.++|+.+++....+...
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~--~~G~~~~~~~-g~l~v~~~~~-~~~~d~~~g~~~~~~~~~   79 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLPG--PNGMAFDRPD-GRLYVADSGG-IAVVDPDTGKVTVLADLP   79 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEESSS--EEEEEEECTT-SEEEEEETTC-EEEEETTTTEEEEEEEEE
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEecCC--CceEEEEccC-CEEEEEEcCc-eEEEecCCCcEEEEeecc
Confidence            467887 7778888778899999998877665443333  5677777 55 4555555544 455588877543322110


Q ss_pred             ccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecC-CCcceeEEEECCCCCEEEEEeCC--------CcEEEEeC
Q 008496          357 SGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAG-HQGEVNCVKWDPTGSLLASCSDD--------VTAKIWNM  427 (563)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~-h~~~i~~~~~~~~~~~las~s~d--------g~i~iwd~  427 (563)
                      .                                     .. .....+.++++|+|++.++....        |.+..++.
T Consensus        80 ~-------------------------------------~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~  122 (246)
T PF08450_consen   80 D-------------------------------------GGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDP  122 (246)
T ss_dssp             T-------------------------------------TCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEET
T ss_pred             C-------------------------------------CCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECC
Confidence            0                                     01 12356788999999988776654        44555665


Q ss_pred             CCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC--C-----eEEEEecCCCCCEEEEEEc
Q 008496          428 KQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL--G-----KLLYSLNGHREPVYSLAFS  500 (563)
Q Consensus       428 ~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~--~-----~~~~~~~~h~~~i~~l~~s  500 (563)
                      . ++ +..+...-.....|+|+|++.        .++++-+..+.|..+++..  +     +....+....+..-.+++.
T Consensus       123 ~-~~-~~~~~~~~~~pNGi~~s~dg~--------~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD  192 (246)
T PF08450_consen  123 D-GK-VTVVADGLGFPNGIAFSPDGK--------TLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVD  192 (246)
T ss_dssp             T-SE-EEEEEEEESSEEEEEEETTSS--------EEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEB
T ss_pred             C-Ce-EEEEecCcccccceEECCcch--------heeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEc
Confidence            5 33 222333344567899999875        3566778889999998853  2     1122233222336789999


Q ss_pred             CCCCEEEEEeCCCcEEEEecCCCeeEEEEecC-CCEEEEEE-cCCCCEEEEEEC
Q 008496          501 PTGEYLASGSLDKSMHIWSLKEGKIVKTYTGN-GGIFEVCW-NKEGDKIAACFA  552 (563)
Q Consensus       501 pdg~~lasgs~dg~v~iw~~~~~~~~~~~~~~-~~i~~l~w-~~~g~~la~~~~  552 (563)
                      .+|++.++.-..+.|.+++.. |+++..+... ..++.++| -++.+.|.+.+.
T Consensus       193 ~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg~~~~~L~vTta  245 (246)
T PF08450_consen  193 SDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFGGPDGKTLYVTTA  245 (246)
T ss_dssp             TTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEESTTSSEEEEEEB
T ss_pred             CCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEECCCCCEEEEEeC
Confidence            999998888888999999987 8888877655 57899999 467777776543

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.95  E-value=5.8e-07  Score=91.09  Aligned_cols=192  Identities=14%  Similarity=0.058  Sum_probs=113.8

Q ss_pred             CeEEEEECCCCCE-EEEEeCC---CeEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEEEe-eCCC--cEEEEECCCCc
Q 008496          276 DVTTLDWNGEGTL-LATGSYD---GQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTG-SCDK--TAIVWDVKTEE  348 (563)
Q Consensus       276 ~V~~l~~s~~g~~-l~sg~~d---g~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~-s~D~--~v~iwd~~~~~  348 (563)
                      ......|+|||+. ++..+.+   ..|.+++..+.....+....+.+....|+|+|+.++.. +.++  .|.++|+.++.
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~  268 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKT  268 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCc
Confidence            4667899999984 6655544   46788887766555555566667778899999877643 3232  34444544332


Q ss_pred             eeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeC-CC--cEEEE
Q 008496          349 WKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD-DV--TAKIW  425 (563)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~-dg--~i~iw  425 (563)
                      ..                                          .+..+.+......|+|||+.|+-.++ .+  .|.+.
T Consensus       269 ~~------------------------------------------~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~  306 (419)
T PRK04043        269 LT------------------------------------------QITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMK  306 (419)
T ss_pred             EE------------------------------------------EcccCCCccCccEECCCCCEEEEEECCCCCceEEEE
Confidence            11                                          11112222234579999987766654 33  46667


Q ss_pred             eCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCC--------CeEEEEeCCCCeEEEEecCCCCCEEEE
Q 008496          426 NMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFD--------STVKLWDVELGKLLYSLNGHREPVYSL  497 (563)
Q Consensus       426 d~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~d--------g~i~iwd~~~~~~~~~~~~h~~~i~~l  497 (563)
                      |+.++.... +.....  ....|+|+|.        .++.+....        ..|.+.|+..+.. ..+... ......
T Consensus       307 dl~~g~~~r-lt~~g~--~~~~~SPDG~--------~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT~~-~~~~~p  373 (419)
T PRK04043        307 KLNSGSVEQ-VVFHGK--NNSSVSTYKN--------YIVYSSRETNNEFGKNTFNLYLISTNSDYI-RRLTAN-GVNQFP  373 (419)
T ss_pred             ECCCCCeEe-CccCCC--cCceECCCCC--------EEEEEEcCCCcccCCCCcEEEEEECCCCCe-EECCCC-CCcCCe
Confidence            777665532 221111  2248999886        233333332        3688888887754 344432 233458


Q ss_pred             EEcCCCCEEEEEeCC-C--cEEEEecCC
Q 008496          498 AFSPTGEYLASGSLD-K--SMHIWSLKE  522 (563)
Q Consensus       498 ~~spdg~~lasgs~d-g--~v~iw~~~~  522 (563)
                      .|||||++|+-.+.+ +  .+.+.++..
T Consensus       374 ~~SPDG~~I~f~~~~~~~~~L~~~~l~g  401 (419)
T PRK04043        374 RFSSDGGSIMFIKYLGNQSALGIIRLNY  401 (419)
T ss_pred             EECCCCCEEEEEEccCCcEEEEEEecCC
Confidence            999999988765543 2  356666644

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.95  E-value=1.2e-05  Score=75.45  Aligned_cols=253  Identities=15%  Similarity=0.272  Sum_probs=156.3

Q ss_pred             CCCceEEEEECCCCCEEEEeeCC---CcEEEEecCC--CCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCE
Q 008496          214 HTSEVCACAWSPAGSLLASGSGD---STARIWTIAD--GTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTL  288 (563)
Q Consensus       214 h~~~V~~~~~sp~~~~latgs~D---~~i~iW~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~  288 (563)
                      +...++=++|+|+.+.|.++-.+   |.|--|.+..  |..         .  .+    .+......+-+.++.+++|++
T Consensus        38 ~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~L---------t--~l----n~~~~~g~~p~yvsvd~~g~~  102 (346)
T COG2706          38 ELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRL---------T--FL----NRQTLPGSPPCYVSVDEDGRF  102 (346)
T ss_pred             ccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeE---------E--Ee----eccccCCCCCeEEEECCCCCE
Confidence            34456678999999998887654   6677776653  211         0  01    111111233378899999999


Q ss_pred             EEEEeCC-CeEEEEEcC--CceeE--eeccCCCC----------EEEEEeCCCCCEEEEeeCC-CcEEEEECCCCceeEE
Q 008496          289 LATGSYD-GQARIWSTN--GDLKC--TLSKHKGP----------IFSLKWNKKGDYLLTGSCD-KTAIVWDVKTEEWKQQ  352 (563)
Q Consensus       289 l~sg~~d-g~i~vw~~~--~~~~~--~~~~h~~~----------V~~l~~~~~~~~l~s~s~D-~~v~iwd~~~~~~~~~  352 (563)
                      ++++.+. |.|.++-++  |.+..  ....|.++          +....+.|++++|++++.. -.|.+|++..+.+...
T Consensus       103 vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~  182 (346)
T COG2706         103 VFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPA  182 (346)
T ss_pred             EEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccc
Confidence            9999876 788888753  43322  23445555          8889999999999987642 3577888775543221


Q ss_pred             eeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeC-CCcEEEEeCCCC-
Q 008496          353 FEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD-DVTAKIWNMKQD-  430 (563)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~-dg~i~iwd~~~~-  430 (563)
                      -..                                     .+ .-...-+-|.|+|++++.....+ +++|.+|..+.. 
T Consensus       183 ~~~-------------------------------------~v-~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~  224 (346)
T COG2706         183 DPA-------------------------------------EV-KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAV  224 (346)
T ss_pred             ccc-------------------------------------cc-CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCC
Confidence            100                                     00 01123456899999999876665 999999998763 


Q ss_pred             ceeeeeccc---------CCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC--CeEEE--EecCCCCCEEEE
Q 008496          431 KYVHDLREH---------SKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL--GKLLY--SLNGHREPVYSL  497 (563)
Q Consensus       431 ~~~~~~~~~---------~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~--~~~~~--~~~~h~~~i~~l  497 (563)
                      ..+..++.+         ....-.|..+|+|+        .+.+|-=....|-+|.+..  +++..  ....+...-...
T Consensus       225 g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGr--------FLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F  296 (346)
T COG2706         225 GKFEELQTIDTLPEDFTGTNWAAAIHISPDGR--------FLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDF  296 (346)
T ss_pred             ceEEEeeeeccCccccCCCCceeEEEECCCCC--------EEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccc
Confidence            222333221         23456677778775        3334433344777777653  33321  122233334678


Q ss_pred             EEcCCCCEEEEEeCC-CcEEEEecC--CCeeEE
Q 008496          498 AFSPTGEYLASGSLD-KSMHIWSLK--EGKIVK  527 (563)
Q Consensus       498 ~~spdg~~lasgs~d-g~v~iw~~~--~~~~~~  527 (563)
                      .|+|+|++|+++..+ ..|.+|.+.  +|++..
T Consensus       297 ~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~  329 (346)
T COG2706         297 NINPSGRFLIAANQKSDNITVFERDKETGRLTL  329 (346)
T ss_pred             eeCCCCCEEEEEccCCCcEEEEEEcCCCceEEe
Confidence            899999999988765 468888764  455433

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=98.91  E-value=5.7e-08  Score=89.60  Aligned_cols=237  Identities=15%  Similarity=0.285  Sum_probs=155.0

Q ss_pred             CCCeEEEEECCCCCEEEEEeCCCeEEEEEcCC--ceeE-eeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEEC----CC
Q 008496          274 SKDVTTLDWNGEGTLLATGSYDGQARIWSTNG--DLKC-TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDV----KT  346 (563)
Q Consensus       274 ~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~--~~~~-~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~----~~  346 (563)
                      ...|+....-|...-+++.+.|.++|||-...  +... .......+++++.+++....|+.|-..|++.-+.+    +.
T Consensus        24 ~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnk  103 (404)
T KOG1409|consen   24 QDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNK  103 (404)
T ss_pred             hhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhh
Confidence            34455555666667789999999999996422  2111 22234578899999999999999999999887754    44


Q ss_pred             CceeEEeeecccCeEEEecCCCc-eEEEEeCCCeE-EEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEE
Q 008496          347 EEWKQQFEFHSGPTLDVDWRNNV-SFATSSTDNMI-YVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKI  424 (563)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~i-~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~i  424 (563)
                      ....+.+..|...+..+-+.-.. .+++.+.|..+ +.+.- .+..+..+. -....+++.+.-.  +...|...|.|.+
T Consensus       104 m~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e-~~~~lg~Y~-~~~~~t~~~~d~~--~~fvGd~~gqvt~  179 (404)
T KOG1409|consen  104 MTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTE-SGNRLGGYN-FETPASALQFDAL--YAFVGDHSGQITM  179 (404)
T ss_pred             cchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeec-cCCcccceE-eeccCCCCceeeE--EEEecccccceEE
Confidence            45555666677766665554332 33444444332 22221 111111110 0001111222111  3334444555544


Q ss_pred             EeC--CCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCe-EEEEecCCCCCEEEEEEcC
Q 008496          425 WNM--KQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK-LLYSLNGHREPVYSLAFSP  501 (563)
Q Consensus       425 wd~--~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~-~~~~~~~h~~~i~~l~~sp  501 (563)
                      -.+  ..-.++.++.+|...+++++|.|...         +|.+|+.|..|.+||+.-.+ ..+.+.+|...|..++.-+
T Consensus       180 lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~---------~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~  250 (404)
T KOG1409|consen  180 LKLEQNGCQLITTFNGHTGEVTCLKWDPGQR---------LLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQ  250 (404)
T ss_pred             EEEeecCCceEEEEcCcccceEEEEEcCCCc---------EEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhh
Confidence            333  34456778899999999999988653         79999999999999987544 3567889999999999988


Q ss_pred             CCCEEEEEeCCCcEEEEecCCC
Q 008496          502 TGEYLASGSLDKSMHIWSLKEG  523 (563)
Q Consensus       502 dg~~lasgs~dg~v~iw~~~~~  523 (563)
                      --+.|.+++.||.|.+|++...
T Consensus       251 ~t~~l~S~~edg~i~~w~mn~~  272 (404)
T KOG1409|consen  251 HTRQLISCGEDGGIVVWNMNVK  272 (404)
T ss_pred             hheeeeeccCCCeEEEEeccce
Confidence            8899999999999999998753

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.89  E-value=3.6e-08  Score=92.92  Aligned_cols=165  Identities=15%  Similarity=0.180  Sum_probs=103.2

Q ss_pred             EEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEEeCCCeEE
Q 008496          220 ACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQAR  299 (563)
Q Consensus       220 ~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~dg~i~  299 (563)
                      .+..+|.+++||.+..+....++++.....    ...........       .....++.+..+........++....+.
T Consensus        67 ~~~~s~~~~llAv~~~~K~~~~f~~~~~~~----~~kl~~~~~v~-------~~~~ai~~~~~~~sv~v~dkagD~~~~d  135 (390)
T KOG3914|consen   67 LVLTSDSGRLVAVATSSKQRAVFDYRENPK----GAKLLDVSCVP-------KRPTAISFIREDTSVLVADKAGDVYSFD  135 (390)
T ss_pred             ccccCCCceEEEEEeCCCceEEEEEecCCC----cceeeeEeecc-------cCcceeeeeeccceEEEEeecCCceeee
Confidence            345566667777666666655555543211    00000111110       1122344444444444444445556677


Q ss_pred             EEEcCCceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecCCCceEEEEeCCCe
Q 008496          300 IWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNM  379 (563)
Q Consensus       300 vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  379 (563)
                      +|.........+-+|-+.++.++|+||+++++++..|..|++-.....-                               
T Consensus       136 i~s~~~~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f-------------------------------  184 (390)
T KOG3914|consen  136 ILSADSGRCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATF-------------------------------  184 (390)
T ss_pred             eecccccCcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCccc-------------------------------
Confidence            7776533333456899999999999999999999999999875432110                               


Q ss_pred             EEEEEcCCCccee-eecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeec
Q 008496          380 IYVCKIGENRPIK-TFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLR  437 (563)
Q Consensus       380 i~~~~~~~~~~~~-~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~  437 (563)
                                .+. -+-||+..|..++.-+ +..|+|+|.|+++++||+.+++.++++.
T Consensus       185 ----------~IesfclGH~eFVS~isl~~-~~~LlS~sGD~tlr~Wd~~sgk~L~t~d  232 (390)
T KOG3914|consen  185 ----------VIESFCLGHKEFVSTISLTD-NYLLLSGSGDKTLRLWDITSGKLLDTCD  232 (390)
T ss_pred             ----------chhhhccccHhheeeeeecc-CceeeecCCCCcEEEEecccCCcccccc
Confidence                      011 2347999999998875 4558999999999999999999886653

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.85  E-value=2.6e-06  Score=80.06  Aligned_cols=217  Identities=18%  Similarity=0.137  Sum_probs=135.5

Q ss_pred             CCeEEEEEc-CCceeEeecc---CCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecCCCce
Q 008496          295 DGQARIWST-NGDLKCTLSK---HKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVS  370 (563)
Q Consensus       295 dg~i~vw~~-~~~~~~~~~~---h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  370 (563)
                      +|.|..||. +|+......-   ....+ .. ..+++.++++++.++.+..||..+++.+-.+.......... ...+..
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~-~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~-~~~~~~   78 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLGPGIGGPV-AT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAP-VVDGGR   78 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSSCSSEE-ET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGE-EEETTE
T ss_pred             CCEEEEEECCCCCEEEEEECCCCCCCcc-ce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeecccccccee-eecccc
Confidence            578888887 5666555432   22222 11 22356788888999999999999998877666522211111 223344


Q ss_pred             EEEEeCCCeEEEEEcCCCcceeee-cCCC---cceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccCCC----
Q 008496          371 FATSSTDNMIYVCKIGENRPIKTF-AGHQ---GEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKE----  442 (563)
Q Consensus       371 ~~~~~~d~~i~~~~~~~~~~~~~~-~~h~---~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~----  442 (563)
                      ++....++.++.++..+++.+... ....   ..........++..++.+..++.|..+|.++++.+.........    
T Consensus        79 v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~  158 (238)
T PF13360_consen   79 VYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSP  158 (238)
T ss_dssp             EEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--
T ss_pred             cccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcc
Confidence            455557779999998888877663 3221   11112222223778888888999999999999987666543322    


Q ss_pred             E------EEEEEccCCCCCCCCCCcEEEEEEeCCCe-EEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcE
Q 008496          443 I------YTIRWSPTGSGTNNPNQQLILASASFDST-VKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSM  515 (563)
Q Consensus       443 i------~~~~~~p~~~~~~~~~~~~~l~s~s~dg~-i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v  515 (563)
                      +      ..-.....        .  .+..++.++. +.+ |+.+++.++... . ..+.. ...+++..|+.++.++.|
T Consensus       159 ~~~~~~~~~~~~~~~--------~--~v~~~~~~g~~~~~-d~~tg~~~w~~~-~-~~~~~-~~~~~~~~l~~~~~~~~l  224 (238)
T PF13360_consen  159 ISSFSDINGSPVISD--------G--RVYVSSGDGRVVAV-DLATGEKLWSKP-I-SGIYS-LPSVDGGTLYVTSSDGRL  224 (238)
T ss_dssp             EEEETTEEEEEECCT--------T--EEEEECCTSSEEEE-ETTTTEEEEEEC-S-S-ECE-CEECCCTEEEEEETTTEE
T ss_pred             eeeecccccceEEEC--------C--EEEEEcCCCeEEEE-ECCCCCEEEEec-C-CCccC-CceeeCCEEEEEeCCCEE
Confidence            1      11111111        1  3455666775 555 999999777544 2 22222 245778888888899999


Q ss_pred             EEEecCCCeeEEE
Q 008496          516 HIWSLKEGKIVKT  528 (563)
Q Consensus       516 ~iw~~~~~~~~~~  528 (563)
                      .+||+++|+.+.+
T Consensus       225 ~~~d~~tG~~~W~  237 (238)
T PF13360_consen  225 YALDLKTGKVVWQ  237 (238)
T ss_dssp             EEEETTTTEEEEE
T ss_pred             EEEECCCCCEEeE
Confidence            9999999998765

...

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.85  E-value=8e-07  Score=79.44  Aligned_cols=215  Identities=15%  Similarity=0.091  Sum_probs=137.5

Q ss_pred             CCEEEEeeCCCcEEEEECCCCceeE-EeeecccCeEEEe--cCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCc--ce
Q 008496          327 GDYLLTGSCDKTAIVWDVKTEEWKQ-QFEFHSGPTLDVD--WRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQG--EV  401 (563)
Q Consensus       327 ~~~l~s~s~D~~v~iwd~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~--~i  401 (563)
                      ..+|+.|+.-|...+|.+.+.+..- +...+...+.-+.  ......+..++.|.++.++++.....-.  .-|..  .+
T Consensus        84 c~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~--~~h~~~~~~  161 (344)
T KOG4532|consen   84 CVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKF--AVHNQNLTQ  161 (344)
T ss_pred             ccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccc--eeeccccce
Confidence            3578899999999999988665432 2222221111000  0112345567788887777665432211  11322  37


Q ss_pred             eEEEECCCCCEEEEEeCCCcEEEEeCCCCce-eee--ecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeC
Q 008496          402 NCVKWDPTGSLLASCSDDVTAKIWNMKQDKY-VHD--LREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDV  478 (563)
Q Consensus       402 ~~~~~~~~~~~las~s~dg~i~iwd~~~~~~-~~~--~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~  478 (563)
                      +++++++|++++++.++...|..|.+..... +..  ...-...-.+..|+...         ..+|+++.||++.|||+
T Consensus       162 ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~---------~~FAv~~Qdg~~~I~DV  232 (344)
T KOG4532|consen  162 NSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSEND---------LQFAVVFQDGTCAIYDV  232 (344)
T ss_pred             eeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCc---------ceEEEEecCCcEEEEEe
Confidence            8999999999999999999999998765432 211  11222333555665543         37899999999999999


Q ss_pred             CCCeEEEE-----ecCCCCCEEEEEEcCCCC--EEEEEeCCCcEEEEecCCCeeEEEE---ec-----C-CCEEEEEEcC
Q 008496          479 ELGKLLYS-----LNGHREPVYSLAFSPTGE--YLASGSLDKSMHIWSLKEGKIVKTY---TG-----N-GGIFEVCWNK  542 (563)
Q Consensus       479 ~~~~~~~~-----~~~h~~~i~~l~~spdg~--~lasgs~dg~v~iw~~~~~~~~~~~---~~-----~-~~i~~l~w~~  542 (563)
                      +.......     -..|.+.|..+.|+|-|.  +|...-.-+.+++-|+++++-.+..   +.     . ..|+.-+|+.
T Consensus       233 R~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~  312 (344)
T KOG4532|consen  233 RNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNN  312 (344)
T ss_pred             cccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccC
Confidence            86543221     234788999999998663  4555555678999999998644332   11     1 2377888888


Q ss_pred             CCCEEEEEEC
Q 008496          543 EGDKIAACFA  552 (563)
Q Consensus       543 ~g~~la~~~~  552 (563)
                      ++..+-+...
T Consensus       313 ~n~s~~v~~e  322 (344)
T KOG4532|consen  313 ENESNDVKNE  322 (344)
T ss_pred             CCcccccccc
Confidence            8876665543

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.84  E-value=1.6e-08  Score=98.46  Aligned_cols=272  Identities=15%  Similarity=0.201  Sum_probs=174.9

Q ss_pred             CCCCeEEEEECCCCCEEEEEeCCCeEEEEEcC--Cc------eeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEEC
Q 008496          273 KSKDVTTLDWNGEGTLLATGSYDGQARIWSTN--GD------LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDV  344 (563)
Q Consensus       273 ~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~--~~------~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~  344 (563)
                      |...|..++--.+.+-+++++.|.+|++|...  |.      ...+...|+.+|.++.|-.+.++++++  |+-+.+||.
T Consensus       734 H~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giHlWDP  811 (1034)
T KOG4190|consen  734 HQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIHLWDP  811 (1034)
T ss_pred             cHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCcceeecc
Confidence            34445555444566789999999999999853  21      334678899999999999888887765  789999998


Q ss_pred             CCCceeEEeee---c--ccCeEEEecC-CCceEEEEeCCCeEEEEEcCCCcceeee-----cCCCcceeEEEECCCCCEE
Q 008496          345 KTEEWKQQFEF---H--SGPTLDVDWR-NNVSFATSSTDNMIYVCKIGENRPIKTF-----AGHQGEVNCVKWDPTGSLL  413 (563)
Q Consensus       345 ~~~~~~~~~~~---~--~~~~~~~~~~-~~~~~~~~~~d~~i~~~~~~~~~~~~~~-----~~h~~~i~~~~~~~~~~~l  413 (563)
                      --+....+...   +  .+.+.++.-. ....++.|+...+|.++|.+...-+..+     .+.++.+.+++.-+.|+.+
T Consensus       812 Figr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~l  891 (1034)
T KOG4190|consen  812 FIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKL  891 (1034)
T ss_pred             cccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchh
Confidence            76665543321   1  1223333322 2334566688888998887765433222     3455678999999999999


Q ss_pred             EEEeCCCcEEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEE-EeCCCCeEEEEecCCCC
Q 008496          414 ASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKL-WDVELGKLLYSLNGHRE  492 (563)
Q Consensus       414 as~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~i-wd~~~~~~~~~~~~h~~  492 (563)
                      |.+-.+|+|-+.|.++++.+...+.-......++- |.        ++ .|+....|.++.+ |....|...+..+....
T Consensus       892 Aa~LSnGci~~LDaR~G~vINswrpmecdllqlaa-ps--------dq-~L~~saldHslaVnWhaldgimh~q~kpppe  961 (1034)
T KOG4190|consen  892 AAALSNGCIAILDARNGKVINSWRPMECDLLQLAA-PS--------DQ-ALAQSALDHSLAVNWHALDGIMHLQDKPPPE  961 (1034)
T ss_pred             hHHhcCCcEEEEecCCCceeccCCcccchhhhhcC-ch--------hH-HHHhhcccceeEeeehhcCCeeeeccCCCCc
Confidence            99999999999999999988766543333333321 21        11 4677777888988 98877777766654333


Q ss_pred             CEEEEEEcCCCCEEEEEeCCCcEEEEecCCC-------eeEEEEecCCCEEEEEEcCCCCEEEEEECCCeEEE
Q 008496          493 PVYSLAFSPTGEYLASGSLDKSMHIWSLKEG-------KIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCV  558 (563)
Q Consensus       493 ~i~~l~~spdg~~lasgs~dg~v~iw~~~~~-------~~~~~~~~~~~i~~l~w~~~g~~la~~~~~~~v~v  558 (563)
                      |..-+  -.-|.-|+++.....+.+|--...       ..++.-.-.+..+.++--|-..-..+|...|.+++
T Consensus       962 pahfl--qsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen  962 PAHFL--QSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred             chhhh--hccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeeccccchhhccCCCCceee
Confidence            32111  123556666666666667642110       01111112344567777776666666666666665

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.84  E-value=1.4e-05  Score=81.27  Aligned_cols=251  Identities=14%  Similarity=0.128  Sum_probs=150.3

Q ss_pred             CCEEEEEeCCCeEEEEEc-CCceeEeeccCCCCEEE-EEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecc------
Q 008496          286 GTLLATGSYDGQARIWST-NGDLKCTLSKHKGPIFS-LKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHS------  357 (563)
Q Consensus       286 g~~l~sg~~dg~i~vw~~-~~~~~~~~~~h~~~V~~-l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~------  357 (563)
                      +..++.++.+|.+..+|. +|+........ +++.+ ...  .+..++.++.++.+..+|..+++.+-.+....      
T Consensus       120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~-~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~  196 (394)
T PRK11138        120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVA-GEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLR  196 (394)
T ss_pred             CCEEEEEcCCCEEEEEECCCCCCcccccCC-CceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCccccc
Confidence            456777888999999996 46655444322 12211 011  24567778889999999999998765554321      


Q ss_pred             ---cCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCC----c---ceeEEEECC--CCCEEEEEeCCCcEEEE
Q 008496          358 ---GPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQ----G---EVNCVKWDP--TGSLLASCSDDVTAKIW  425 (563)
Q Consensus       358 ---~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~----~---~i~~~~~~~--~~~~las~s~dg~i~iw  425 (563)
                         .|+.     .+..++.+..++.++.++..+++.+-.+....    .   ....+..+|  .+..+..++.+|.+..+
T Consensus       197 ~~~sP~v-----~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~al  271 (394)
T PRK11138        197 GESAPAT-----AFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVAL  271 (394)
T ss_pred             CCCCCEE-----ECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEE
Confidence               1111     12235556678888888877665543322100    0   011111122  24556677788999999


Q ss_pred             eCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCC-CEEEEEEcCCCC
Q 008496          426 NMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHRE-PVYSLAFSPTGE  504 (563)
Q Consensus       426 d~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~-~i~~l~~spdg~  504 (563)
                      |..+++.+-....  .....+..  .+       +  .+..++.+|.+..+|..+|+.++....-.. ...+...  .+.
T Consensus       272 d~~tG~~~W~~~~--~~~~~~~~--~~-------~--~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g  336 (394)
T PRK11138        272 DLRSGQIVWKREY--GSVNDFAV--DG-------G--RIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNG  336 (394)
T ss_pred             ECCCCCEEEeecC--CCccCcEE--EC-------C--EEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECC
Confidence            9988876543221  11111111  01       1  355677899999999999988875432111 1122222  245


Q ss_pred             EEEEEeCCCcEEEEecCCCeeEEEEecC-CCEEE-EEEcCCCCEEEEEECCCeEEEEEe
Q 008496          505 YLASGSLDKSMHIWSLKEGKIVKTYTGN-GGIFE-VCWNKEGDKIAACFANHTVCVLDF  561 (563)
Q Consensus       505 ~lasgs~dg~v~iw~~~~~~~~~~~~~~-~~i~~-l~w~~~g~~la~~~~~~~v~v~~~  561 (563)
                      +|..++.||.|.+.|..+|+++..+... ..+.. ...  .+.+|.++..+|.+..++.
T Consensus       337 ~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~~~~~  393 (394)
T PRK11138        337 YLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVV--ADDKLLIQARDGTVYAITR  393 (394)
T ss_pred             EEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence            7778899999999999999998877543 22322 122  3568888889998877653

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.83  E-value=9.3e-08  Score=90.17  Aligned_cols=86  Identities=23%  Similarity=0.339  Sum_probs=71.1

Q ss_pred             eeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeee-cccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCC
Q 008496          392 KTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDL-REHSKEIYTIRWSPTGSGTNNPNQQLILASASFD  470 (563)
Q Consensus       392 ~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~-~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~d  470 (563)
                      ....||-..+..++|+||+++|+++..|..|||-....-..+..+ -+|..-|.+++..++-          .|+|||.|
T Consensus       145 ~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~----------~LlS~sGD  214 (390)
T KOG3914|consen  145 EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNY----------LLLSGSGD  214 (390)
T ss_pred             chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCc----------eeeecCCC
Confidence            445689999999999999999999999999999776554444444 3688888888876643          58999999


Q ss_pred             CeEEEEeCCCCeEEEEe
Q 008496          471 STVKLWDVELGKLLYSL  487 (563)
Q Consensus       471 g~i~iwd~~~~~~~~~~  487 (563)
                      ++|++||+.+|+++.++
T Consensus       215 ~tlr~Wd~~sgk~L~t~  231 (390)
T KOG3914|consen  215 KTLRLWDITSGKLLDTC  231 (390)
T ss_pred             CcEEEEecccCCccccc
Confidence            99999999999988655

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.82  E-value=9.2e-06  Score=78.39  Aligned_cols=142  Identities=17%  Similarity=0.168  Sum_probs=110.3

Q ss_pred             CCeEEEEECCCCCEEEEEeCCC-eEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEe
Q 008496          275 KDVTTLDWNGEGTLLATGSYDG-QARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQF  353 (563)
Q Consensus       275 ~~V~~l~~s~~g~~l~sg~~dg-~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~  353 (563)
                      ..|.-..+..+++-++.|..|| .+-|++..+.....+...-+.|.+++.+|+|++++.+.....+.+.|+.++.....-
T Consensus       360 ~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~id  439 (668)
T COG4946         360 GGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLID  439 (668)
T ss_pred             CceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEec
Confidence            4477778888888999999999 899999999888888888899999999999999999988889999999999876555


Q ss_pred             eecccCeEEEecCCCceEEEE-eCCC----eEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEe
Q 008496          354 EFHSGPTLDVDWRNNVSFATS-STDN----MIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCS  417 (563)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~-~~d~----~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s  417 (563)
                      ....+-+.++.|.++..|++- -.+|    .|+++++..++....-. ..+.=-+-+|.|++++|.--|
T Consensus       440 kS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT-~ta~DfsPaFD~d~ryLYfLs  507 (668)
T COG4946         440 KSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT-PTAYDFSPAFDPDGRYLYFLS  507 (668)
T ss_pred             ccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecC-CcccccCcccCCCCcEEEEEe
Confidence            555567899999988776543 3333    57888888766543322 122223578999999876544

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.80  E-value=7.8e-08  Score=96.95  Aligned_cols=276  Identities=17%  Similarity=0.291  Sum_probs=178.8

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCeEEEEEcCCc-eeEeeccCCC--CEEEEEeCCCC--C-EEEEeeCCCcEEEEECCCC-
Q 008496          275 KDVTTLDWNGEGTLLATGSYDGQARIWSTNGD-LKCTLSKHKG--PIFSLKWNKKG--D-YLLTGSCDKTAIVWDVKTE-  347 (563)
Q Consensus       275 ~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~-~~~~~~~h~~--~V~~l~~~~~~--~-~l~s~s~D~~v~iwd~~~~-  347 (563)
                      ..+..+..+|.|+-++.++.-|... -|++.. .....-.|-.  .|-.+.|+|..  . ++++.+ .....+|++... 
T Consensus        25 ~~~~a~si~p~grdi~lAsr~gl~i-~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts-~qkaiiwnlA~ss  102 (1081)
T KOG0309|consen   25 GGFNAVSINPSGRDIVLASRQGLYI-IDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTS-NQKAIIWNLAKSS  102 (1081)
T ss_pred             CcccceeeccccchhhhhhhcCeEE-EeccCCCCCceeeeccCcchhcceecccCCCCceeEEecC-cchhhhhhhhcCC
Confidence            5577888899999999988776443 343321 1111122332  35667787754  2 345444 445678887432 


Q ss_pred             --ceeEEeeecccCeEEEecCCC--ceEEEEeCCCeEEEEEcCCC-cceeeecCCCcceeEEEECCCCCEEEEEeCCCcE
Q 008496          348 --EWKQQFEFHSGPTLDVDWRNN--VSFATSSTDNMIYVCKIGEN-RPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTA  422 (563)
Q Consensus       348 --~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~d~~i~~~~~~~~-~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i  422 (563)
                        ...-.+..|...+.++.|...  ..+++|+.|..+..|+++.. .|+..+..-......++|+.....+...+...-|
T Consensus       103 ~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i  182 (1081)
T KOG0309|consen  103 SNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDI  182 (1081)
T ss_pred             ccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCce
Confidence              222234567778899999654  57899999999999999764 5666665555667789998766555566667789


Q ss_pred             EEEeCCCC-ceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeE--EEEecCCCCCEEEEEE
Q 008496          423 KIWNMKQD-KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKL--LYSLNGHREPVYSLAF  499 (563)
Q Consensus       423 ~iwd~~~~-~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~--~~~~~~h~~~i~~l~~  499 (563)
                      ++||.+.+ .+++.+++|...|+.+.|..-..        -.+.+++.||+|++||..+...  -+.+. -..||....|
T Consensus       183 ~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~--------s~~~s~~~d~tvkfw~y~kSt~e~~~~vt-t~~piw~~r~  253 (1081)
T KOG0309|consen  183 FVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKY--------SEIMSSSNDGTVKFWDYSKSTTESKRTVT-TNFPIWRGRY  253 (1081)
T ss_pred             EEEeccCCCcceEEecccceeeehHHHhhhhh--------hhhcccCCCCceeeecccccccccceecc-ccCcceeccc
Confidence            99999865 46788888988888888754321        1477899999999999875432  22222 3467888888


Q ss_pred             cCCCCEEEEE--eCCCcEEEE---------ecCCC-eeEEEEecCC-CEEEEEEcCCCC----------EEEEEECCCeE
Q 008496          500 SPTGEYLASG--SLDKSMHIW---------SLKEG-KIVKTYTGNG-GIFEVCWNKEGD----------KIAACFANHTV  556 (563)
Q Consensus       500 spdg~~lasg--s~dg~v~iw---------~~~~~-~~~~~~~~~~-~i~~l~w~~~g~----------~la~~~~~~~v  556 (563)
                      -|-|.-..+-  -.+..|.++         ++.++ +.+.+|.++. .|.++.|...+.          .|++=+.|-.+
T Consensus       254 ~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~l  333 (1081)
T KOG0309|consen  254 LPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTL  333 (1081)
T ss_pred             cccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCce
Confidence            8865432221  112234444         33332 4678887764 355666655432          67777788888


Q ss_pred             EEEEe
Q 008496          557 CVLDF  561 (563)
Q Consensus       557 ~v~~~  561 (563)
                      ++|-+
T Consensus       334 rlWpI  338 (1081)
T KOG0309|consen  334 RLWPI  338 (1081)
T ss_pred             Eeeec
Confidence            88854

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.80  E-value=1.4e-07  Score=85.81  Aligned_cols=275  Identities=17%  Similarity=0.294  Sum_probs=159.2

Q ss_pred             CceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCC-----CCCCCceEEEEEeeecccccCCCCeEEEEECCCC--CE
Q 008496          216 SEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGG-----AQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG--TL  288 (563)
Q Consensus       216 ~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g--~~  288 (563)
                      .-|+++.|...|.+|++|...|.+.++.-.....-..     .+......-.++.+     .....|..+.|-.++  ..
T Consensus        27 d~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSl-----eieEKin~I~w~~~t~r~h  101 (460)
T COG5170          27 DKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSL-----EIEEKINAIEWFDDTGRNH  101 (460)
T ss_pred             ceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhc-----cHHHHhhheeeecCCCcce
Confidence            4588999999999999999889999997543220000     11100000000000     111347778887654  45


Q ss_pred             EEEEeCCCeEEEEEcCCceeEee----------ccCCCCEEEEE------eCCCCCEEEEeeCCCcEEEEECCCCceeEE
Q 008496          289 LATGSYDGQARIWSTNGDLKCTL----------SKHKGPIFSLK------WNKKGDYLLTGSCDKTAIVWDVKTEEWKQQ  352 (563)
Q Consensus       289 l~sg~~dg~i~vw~~~~~~~~~~----------~~h~~~V~~l~------~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~  352 (563)
                      ++..+.|.+|++|....+-....          ....+|+++.+      .+... .++++ .  -.+++          
T Consensus       102 FLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd-~iiaa-~--p~rvy----------  167 (460)
T COG5170         102 FLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHD-EIIAA-K--PCRVY----------  167 (460)
T ss_pred             EEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccc-eEEEe-c--cceec----------
Confidence            77778899999998643311111          01123333221      01110 11111 1  11222          


Q ss_pred             eeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCc---ceeeecCCC-----cceeEEEECCCC-CEEEEEeCCCcEE
Q 008496          353 FEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENR---PIKTFAGHQ-----GEVNCVKWDPTG-SLLASCSDDVTAK  423 (563)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~---~~~~~~~h~-----~~i~~~~~~~~~-~~las~s~dg~i~  423 (563)
                      -..|...+.++.+..+..+..+..|-.|.+|.+....   .+..++.|.     .-|++..|+|.. .++.-.+..|.|+
T Consensus       168 aNaH~yhiNSiS~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ik  247 (460)
T COG5170         168 ANAHPYHINSISFNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIK  247 (460)
T ss_pred             cccceeEeeeeeecCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEE
Confidence            0223333455666666667777777777777764321   233334443     347889999964 5667778899999


Q ss_pred             EEeCCCCceee----------------eecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC-eEEEE
Q 008496          424 IWNMKQDKYVH----------------DLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG-KLLYS  486 (563)
Q Consensus       424 iwd~~~~~~~~----------------~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~-~~~~~  486 (563)
                      +-|++......                -+.+-...|..+.|+++|+         ++++-+. -+|+|||++.. .++.+
T Consensus       248 l~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngr---------yIlsRdy-ltvkiwDvnm~k~pikT  317 (460)
T COG5170         248 LNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGR---------YILSRDY-LTVKIWDVNMAKNPIKT  317 (460)
T ss_pred             ehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCc---------EEEEecc-ceEEEEecccccCCcee
Confidence            99998432210                1122335678889999886         6666544 68999999854 45666


Q ss_pred             ecCCC------------CCE---EEEEEcCCCCEEEEEeCCCcEEEEe
Q 008496          487 LNGHR------------EPV---YSLAFSPTGEYLASGSLDKSMHIWS  519 (563)
Q Consensus       487 ~~~h~------------~~i---~~l~~spdg~~lasgs~dg~v~iw~  519 (563)
                      +.-|.            ..|   ..+.||-|.+.+.+||..+..-||-
T Consensus       318 i~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp  365 (460)
T COG5170         318 IPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYP  365 (460)
T ss_pred             echHHHHHHHHHhhhhccceeeeEEEEecCCcccccccccccceeeec
Confidence            54332            234   3588999988888888877666665

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.79  E-value=9.4e-09  Score=105.29  Aligned_cols=252  Identities=17%  Similarity=0.349  Sum_probs=169.8

Q ss_pred             CCCCeEEEEECCCCCEEEEEeCCCeEEEEEcC-CceeEeeccCCCCEEEEEeCCCCCEEEEeeCCC--cEEEEECCC-Cc
Q 008496          273 KSKDVTTLDWNGEGTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDK--TAIVWDVKT-EE  348 (563)
Q Consensus       273 ~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~--~v~iwd~~~-~~  348 (563)
                      +....||++|+.+.+.|+.|+..|.|+++++. |.......+|.++|+-+.=+.+|..+++.+.-.  -..+|++.. +.
T Consensus      1100 ~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~~ 1179 (1516)
T KOG1832|consen 1100 ETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTGG 1179 (1516)
T ss_pred             cccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhccccccC
Confidence            45678999999999999999999999999976 555667889999999999999998877655433  467898753 33


Q ss_pred             eeEEeeecccCeEEEecCCCceEE-EEeCCCeEEEEEcCCCcceeeec-C---CCcceeEEEECCCCCEEEEEeCCCcEE
Q 008496          349 WKQQFEFHSGPTLDVDWRNNVSFA-TSSTDNMIYVCKIGENRPIKTFA-G---HQGEVNCVKWDPTGSLLASCSDDVTAK  423 (563)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~d~~i~~~~~~~~~~~~~~~-~---h~~~i~~~~~~~~~~~las~s~dg~i~  423 (563)
                      ....|..    -..+.|.+...+. .+.......+||+.++.++.++- +   .+..-+++.|+|+.++++   +||.  
T Consensus      1180 ~~Hsf~e----d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl---ndGv-- 1250 (1516)
T KOG1832|consen 1180 PRHSFDE----DKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL---NDGV-- 1250 (1516)
T ss_pred             ccccccc----cceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe---eCce--
Confidence            3333322    1234444443332 22223456789999988877742 2   222347899999999876   4554  


Q ss_pred             EEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCC
Q 008496          424 IWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTG  503 (563)
Q Consensus       424 iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg  503 (563)
                      +||.+....++.|...+.. ..-.|+|.|.        -+++ -     --|||+++-++++.+....  -..+.|+..|
T Consensus      1251 LWDvR~~~aIh~FD~ft~~-~~G~FHP~g~--------eVII-N-----SEIwD~RTF~lLh~VP~Ld--qc~VtFNstG 1313 (1516)
T KOG1832|consen 1251 LWDVRIPEAIHRFDQFTDY-GGGGFHPSGN--------EVII-N-----SEIWDMRTFKLLHSVPSLD--QCAVTFNSTG 1313 (1516)
T ss_pred             eeeeccHHHHhhhhhheec-ccccccCCCc--------eEEe-e-----chhhhhHHHHHHhcCcccc--ceEEEeccCc
Confidence            7999887777666543311 1223455543        3333 2     2589999988776654322  2568888888


Q ss_pred             CEEEEEe-----C-C-----------CcEEEEecCCCeeEEEEecCCCEEEEEEcCCCCEEEEE
Q 008496          504 EYLASGS-----L-D-----------KSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAAC  550 (563)
Q Consensus       504 ~~lasgs-----~-d-----------g~v~iw~~~~~~~~~~~~~~~~i~~l~w~~~g~~la~~  550 (563)
                      ..+...=     . |           ...+-|+..+.+.+.++...-.++++|=+|...+|++-
T Consensus      1314 ~VmYa~~~~~d~~sdvh~~r~k~p~fSSFRTf~a~dYs~iaTi~v~R~~~Dlct~~~D~~l~vI 1377 (1516)
T KOG1832|consen 1314 DVMYAMLNIEDVMSDVHTRRVKHPLFSSFRTFDAIDYSDIATIPVDRCLLDLCTEPTDSFLGVI 1377 (1516)
T ss_pred             cchhhhhhhhhhhhhhcccccccchhhhhccccccccccceeeecccchhhhhcCCccceEEEE
Confidence            7654321     0 0           23456666667778888888889999999988888764

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.78  E-value=2.3e-08  Score=64.14  Aligned_cols=39  Identities=41%  Similarity=0.867  Sum_probs=37.0

Q ss_pred             CeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 008496          481 GKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWS  519 (563)
Q Consensus       481 ~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~  519 (563)
                      ++++.++.+|..+|++|+|+|++.+|++|+.|+.|++||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            467889999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.77  E-value=5.7e-07  Score=91.45  Aligned_cols=235  Identities=14%  Similarity=0.204  Sum_probs=156.6

Q ss_pred             eEEEEECCCCCEEEEEeCCCeEEEEEc-CCceeEeeccCCCCEEEEEeCCCC------------CEEEEeeCCCcEEEEE
Q 008496          277 VTTLDWNGEGTLLATGSYDGQARIWST-NGDLKCTLSKHKGPIFSLKWNKKG------------DYLLTGSCDKTAIVWD  343 (563)
Q Consensus       277 V~~l~~s~~g~~l~sg~~dg~i~vw~~-~~~~~~~~~~h~~~V~~l~~~~~~------------~~l~s~s~D~~v~iwd  343 (563)
                      -.+++|+|.| +||-|+.+ .|.+-|. .-+....+..|...|+.++|.|-.            -.|+++...|.|.+||
T Consensus        18 ~~A~Dw~~~G-LiAygshs-lV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d   95 (1062)
T KOG1912|consen   18 RNAADWSPSG-LIAYGSHS-LVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVD   95 (1062)
T ss_pred             ccccccCccc-eEEEecCc-eEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEE
Confidence            4578899987 56666654 5556564 456677888999999999998632            2356667779999999


Q ss_pred             CCCCceeEEeeecccCeEEEecCC---C--ceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECC-CCCEEEEEe
Q 008496          344 VKTEEWKQQFEFHSGPTLDVDWRN---N--VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDP-TGSLLASCS  417 (563)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~-~~~~las~s  417 (563)
                      ...+..+..+..+..++.+++|..   +  ..+++-+...++.+|+..++..+-.+........|+.++| |.+.+..-+
T Consensus        96 ~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~  175 (1062)
T KOG1912|consen   96 FVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLG  175 (1062)
T ss_pred             ehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEc
Confidence            999988888888999999999842   2  3456667778999999888877666655555677788888 445554445


Q ss_pred             CCCcEEEEeCCC-Cc---eeeee---cccCC----------------C-------EE--EEEEccCCCCCCCCCCcEEEE
Q 008496          418 DDVTAKIWNMKQ-DK---YVHDL---REHSK----------------E-------IY--TIRWSPTGSGTNNPNQQLILA  465 (563)
Q Consensus       418 ~dg~i~iwd~~~-~~---~~~~~---~~~~~----------------~-------i~--~~~~~p~~~~~~~~~~~~~l~  465 (563)
                      ..|.+.+-+.-. ..   +.+.+   ..|..                .       .+  .++|+|.-+       ..+++
T Consensus       176 s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~r-------n~lfi  248 (1062)
T KOG1912|consen  176 SKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWR-------NILFI  248 (1062)
T ss_pred             cCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhh-------ceEEE
Confidence            555555544321 10   11111   11111                0       00  122333221       12333


Q ss_pred             EEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCC--CEEEEEeCCCcEEEEecCC
Q 008496          466 SASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTG--EYLASGSLDKSMHIWSLKE  522 (563)
Q Consensus       466 s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg--~~lasgs~dg~v~iw~~~~  522 (563)
                        .....+.++|++-..++....-.++.+.=+.+-|++  ..|..+-.||.+.||-.+.
T Consensus       249 --~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~  305 (1062)
T KOG1912|consen  249 --TFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE  305 (1062)
T ss_pred             --EeccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence              356789999999888888776666666667777776  5788899999999997654

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.75  E-value=5e-08  Score=89.98  Aligned_cols=147  Identities=15%  Similarity=0.220  Sum_probs=104.3

Q ss_pred             eCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCC-----ceeeeecccCCCEEEEEEc
Q 008496          375 STDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD-----KYVHDLREHSKEIYTIRWS  449 (563)
Q Consensus       375 ~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~-----~~~~~~~~~~~~i~~~~~~  449 (563)
                      +.+..+.+.++.++. .+.|. ..+.|.++.|...++++..|..+|.|..+|++..     .+.+.+ -|...|+++..-
T Consensus       231 G~sqqv~L~nvetg~-~qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~Ssvtslq~L  307 (425)
T KOG2695|consen  231 GLSQQVLLTNVETGH-QQSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHDSSVTSLQIL  307 (425)
T ss_pred             cccceeEEEEeeccc-ccccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE-EcCcchhhhhhh
Confidence            344444455554332 12222 4567889999998999999999999999999865     223333 477777777643


Q ss_pred             cCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeE---EEEecCCCCCEEE--EEEcCCCCEEEEEeCCCcEEEEecCCCe
Q 008496          450 PTGSGTNNPNQQLILASASFDSTVKLWDVELGKL---LYSLNGHREPVYS--LAFSPTGEYLASGSLDKSMHIWSLKEGK  524 (563)
Q Consensus       450 p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~---~~~~~~h~~~i~~--l~~spdg~~lasgs~dg~v~iw~~~~~~  524 (563)
                      ...       ++ .|.+.+++|+|++||.+.-++   +....||...-.-  +-..+....+++++.|...+||.++.|.
T Consensus       308 q~s-------~q-~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~gh  379 (425)
T KOG2695|consen  308 QFS-------QQ-KLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGH  379 (425)
T ss_pred             ccc-------cc-eEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCc
Confidence            311       22 567788999999999997666   8888888543222  2335667789999999999999999999


Q ss_pred             eEEEEecC
Q 008496          525 IVKTYTGN  532 (563)
Q Consensus       525 ~~~~~~~~  532 (563)
                      ++.+.+..
T Consensus       380 Ll~tipf~  387 (425)
T KOG2695|consen  380 LLCTIPFP  387 (425)
T ss_pred             eeeccCCC
Confidence            99987653

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.67  E-value=8.3e-06  Score=73.10  Aligned_cols=229  Identities=14%  Similarity=0.083  Sum_probs=144.1

Q ss_pred             CCCEEEEEeCCCeEEEEEcCCc--eeEeeccCCCCEEEEEeC-CCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeE
Q 008496          285 EGTLLATGSYDGQARIWSTNGD--LKCTLSKHKGPIFSLKWN-KKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTL  361 (563)
Q Consensus       285 ~g~~l~sg~~dg~i~vw~~~~~--~~~~~~~h~~~V~~l~~~-~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~  361 (563)
                      ..-+|+.||..|...+|.....  .......|...|+-++=. ...-.+..++.|.++++.++..+..........-.+.
T Consensus        83 kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~n  162 (344)
T KOG4532|consen   83 KCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQN  162 (344)
T ss_pred             cccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeecccccee
Confidence            3457999999999999987632  223334454444332211 1123467788999999998866544333222212245


Q ss_pred             EEecCCCceEEE-EeCCCeEEEEEcCCCc--ceeeec-CCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeee--
Q 008496          362 DVDWRNNVSFAT-SSTDNMIYVCKIGENR--PIKTFA-GHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHD--  435 (563)
Q Consensus       362 ~~~~~~~~~~~~-~~~d~~i~~~~~~~~~--~~~~~~-~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~--  435 (563)
                      .+...++..+.+ .+....|+.|.++...  ...+.. .....--+..|+.....+|+++.||++.|||++.......  
T Consensus       163 s~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~  242 (344)
T KOG4532|consen  163 SLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEI  242 (344)
T ss_pred             eeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhh
Confidence            566666666654 4555678888776542  233222 2233345788999999999999999999999986554322  


Q ss_pred             ---ecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEec-------CCC-CCEEEEEEcCCCC
Q 008496          436 ---LREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLN-------GHR-EPVYSLAFSPTGE  504 (563)
Q Consensus       436 ---~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-------~h~-~~i~~l~~spdg~  504 (563)
                         -..|.+.+..+.|+|.|.-      . +|.-.-.-+.+.+.|+++++....+.       .|. ..|+...|+.++.
T Consensus       243 sstrp~hnGa~R~c~Fsl~g~l------D-LLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~  315 (344)
T KOG4532|consen  243 SSTRPHHNGAFRVCRFSLYGLL------D-LLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENE  315 (344)
T ss_pred             cccCCCCCCceEEEEecCCCcc------e-EEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCc
Confidence               1247889999999986642      2 34444455789999999887554432       122 2377788888876


Q ss_pred             EEEEEeCCCcEEEEecC
Q 008496          505 YLASGSLDKSMHIWSLK  521 (563)
Q Consensus       505 ~lasgs~dg~v~iw~~~  521 (563)
                      -+.+.+.+. +.-|++.
T Consensus       316 s~~v~~e~~-~ae~ni~  331 (344)
T KOG4532|consen  316 SNDVKNELQ-GAEYNIL  331 (344)
T ss_pred             ccccccchh-hheeecc
Confidence            666655543 4455554

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.65  E-value=7.7e-08  Score=61.69  Aligned_cols=38  Identities=39%  Similarity=0.910  Sum_probs=35.9

Q ss_pred             cceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEe
Q 008496          389 RPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWN  426 (563)
Q Consensus       389 ~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd  426 (563)
                      +++.++.+|.+.|++++|+|++.+|++|+.|++|++||
T Consensus         2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            45788999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.64  E-value=6e-07  Score=91.29  Aligned_cols=159  Identities=19%  Similarity=0.326  Sum_probs=126.0

Q ss_pred             ceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEEEEEccCCCCC--CC-CCCcEEEEEEeCCCeEEEE
Q 008496          400 EVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGT--NN-PNQQLILASASFDSTVKLW  476 (563)
Q Consensus       400 ~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~--~~-~~~~~~l~s~s~dg~i~iw  476 (563)
                      .-++++|+|.| +||-|+.. .|.+-|..+-+.+..+..|...|+.++|.|....-  .. +..+++||++...|.|.+|
T Consensus        17 N~~A~Dw~~~G-LiAygshs-lV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~   94 (1062)
T KOG1912|consen   17 NRNAADWSPSG-LIAYGSHS-LVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILV   94 (1062)
T ss_pred             cccccccCccc-eEEEecCc-eEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEE
Confidence            36689999866 66666654 68888999999999999999999999999865322  12 2356789999999999999


Q ss_pred             eCCCCeEEEEecCCCCCEEEEEEcC---CC-CEEEEEeCCCcEEEEecCCCeeEEEEecCCCE-EEEEEcC-CCCEEEEE
Q 008496          477 DVELGKLLYSLNGHREPVYSLAFSP---TG-EYLASGSLDKSMHIWSLKEGKIVKTYTGNGGI-FEVCWNK-EGDKIAAC  550 (563)
Q Consensus       477 d~~~~~~~~~~~~h~~~i~~l~~sp---dg-~~lasgs~dg~v~iw~~~~~~~~~~~~~~~~i-~~l~w~~-~g~~la~~  550 (563)
                      |...+..+..+..|..+|..++|-|   +. .+|++-....+|.+|+..+|+.+..+.....| .++.++| |.+++.+-
T Consensus        95 d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l  174 (1062)
T KOG1912|consen   95 DFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVL  174 (1062)
T ss_pred             EehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEE
Confidence            9999988888998999999998865   34 46666677789999999999998887765544 4588998 66788877


Q ss_pred             ECCCeEEEEE
Q 008496          551 FANHTVCVLD  560 (563)
Q Consensus       551 ~~~~~v~v~~  560 (563)
                      +..|.|.+.+
T Consensus       175 ~s~g~vl~~~  184 (1062)
T KOG1912|consen  175 GSKGFVLSCK  184 (1062)
T ss_pred             ccCceEEEEe
Confidence            7777766554

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.64  E-value=9e-07  Score=91.70  Aligned_cols=183  Identities=17%  Similarity=0.268  Sum_probs=135.5

Q ss_pred             CCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEE
Q 008496          326 KGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVK  405 (563)
Q Consensus       326 ~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~  405 (563)
                      ++..++-|+....+..+|+++.+..+......+.+.-+. .++..+.++...|+|.+-|..+.+++.++..|++.|..++
T Consensus       146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR-~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfD  224 (1118)
T KOG1275|consen  146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMR-YNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFD  224 (1118)
T ss_pred             CCcceeecchhhheeeeecccceeeeeeeccCCceEEEE-ecCcEEEeecccceEEeecCCcCceeeeeeccccceeeee
Confidence            345678888888889999998887776665554443333 3455677788999999999999999999999999997655


Q ss_pred             ECCCCCEEEEEeCCC---------cEEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEE
Q 008496          406 WDPTGSLLASCSDDV---------TAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLW  476 (563)
Q Consensus       406 ~~~~~~~las~s~dg---------~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iw  476 (563)
                      .  .|++|+||+..+         -|+|||++..+.+.-+..+.++ .-++|.|.-.        ..++.+|..|...+-
T Consensus       225 v--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~--------t~~~V~S~sGq~q~v  293 (1118)
T KOG1275|consen  225 V--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLT--------TRLAVTSQSGQFQFV  293 (1118)
T ss_pred             c--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhccccc--------ceEEEEecccceeec
Confidence            4  689999998644         4789999887766555544443 4456666543        257778888999998


Q ss_pred             e---CCCCe-EEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEec
Q 008496          477 D---VELGK-LLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSL  520 (563)
Q Consensus       477 d---~~~~~-~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~  520 (563)
                      |   +.+.. .++.+......|.++.+|++|..||.|..+|.|.+|.-
T Consensus       294 d~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~  341 (1118)
T KOG1275|consen  294 DTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWAD  341 (1118)
T ss_pred             cccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence            8   33321 12333334455999999999999999999999999973

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.63  E-value=1.5e-05  Score=72.55  Aligned_cols=192  Identities=21%  Similarity=0.299  Sum_probs=107.4

Q ss_pred             eEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCC------CCEEEE
Q 008496          218 VCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE------GTLLAT  291 (563)
Q Consensus       218 V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~------g~~l~s  291 (563)
                      =+.++||||+.+||.+...|+|+++|+.....           ..+.........-...|-.|.|-.-      ...|++
T Consensus        46 WRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~l-----------f~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlv  114 (282)
T PF15492_consen   46 WRKLAWSPDCTLLAYAESTGTIRVFDLMGSEL-----------FVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLV  114 (282)
T ss_pred             heEEEECCCCcEEEEEcCCCeEEEEeccccee-----------EEcCcccccCCccccceeeeEeeccccccccceeEEE
Confidence            35789999999999999999999999864321           0110000001112234555544321      124556


Q ss_pred             EeCCCeEEEEEcC-----C-ceeEee--c-cCCCCEEEEEeCCCCCEEEEeeCCCc-----------EEEEECCCCceeE
Q 008496          292 GSYDGQARIWSTN-----G-DLKCTL--S-KHKGPIFSLKWNKKGDYLLTGSCDKT-----------AIVWDVKTEEWKQ  351 (563)
Q Consensus       292 g~~dg~i~vw~~~-----~-~~~~~~--~-~h~~~V~~l~~~~~~~~l~s~s~D~~-----------v~iwd~~~~~~~~  351 (563)
                      -.+.|.++=|-+.     + ....++  . .+...|.++.|+|..+.|+.|+....           +..|.+-.+.   
T Consensus       115 i~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~---  191 (282)
T PF15492_consen  115 INYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDS---  191 (282)
T ss_pred             EeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCC---
Confidence            6778877766531     1 122232  2 24778999999999888887765322           2233222111   


Q ss_pred             EeeecccCeEEEecCCCceEEEEeCCCeE------EEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEE
Q 008496          352 QFEFHSGPTLDVDWRNNVSFATSSTDNMI------YVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIW  425 (563)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~i------~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iw  425 (563)
                                     +....+....+...      .++.+...+...........|-.+..||||++||+.+.+|.|.+|
T Consensus       192 ---------------Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW  256 (282)
T PF15492_consen  192 ---------------PYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLW  256 (282)
T ss_pred             ---------------CcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEE
Confidence                           01111111111111      112221111100011234568899999999999999999999999


Q ss_pred             eCCCCceeeeecc
Q 008496          426 NMKQDKYVHDLRE  438 (563)
Q Consensus       426 d~~~~~~~~~~~~  438 (563)
                      ++-+-++......
T Consensus       257 ~iPsL~~~~~W~~  269 (282)
T PF15492_consen  257 EIPSLRLQRSWKQ  269 (282)
T ss_pred             ecCcchhhcccch
Confidence            9877665554443

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.61  E-value=9e-07  Score=84.64  Aligned_cols=237  Identities=19%  Similarity=0.242  Sum_probs=155.1

Q ss_pred             CCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCC---CceeEEeeecccCeEEEecCC-CceEEEEeC-CCeEEEEEcCCC
Q 008496          314 HKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKT---EEWKQQFEFHSGPTLDVDWRN-NVSFATSST-DNMIYVCKIGEN  388 (563)
Q Consensus       314 h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~---~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-d~~i~~~~~~~~  388 (563)
                      |...|+.+. ....+++++++.||.++.|-...   -+.+..+..|.+.+..+.... ...+.+.+. |..++++++..-
T Consensus         8 hrd~i~hv~-~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~   86 (558)
T KOG0882|consen    8 HRDVITHVF-PTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF   86 (558)
T ss_pred             ccceeeeEe-eehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc
Confidence            666666654 33457899999999999997533   234445566666665555433 345566555 889999887653


Q ss_pred             ccee--eecCCCcceeEEEECCCC--CEE-EEEeCCCcEEEEeCCCCce--eeeecccCCCEEEEEEccCCCCCCCCCCc
Q 008496          389 RPIK--TFAGHQGEVNCVKWDPTG--SLL-ASCSDDVTAKIWNMKQDKY--VHDLREHSKEIYTIRWSPTGSGTNNPNQQ  461 (563)
Q Consensus       389 ~~~~--~~~~h~~~i~~~~~~~~~--~~l-as~s~dg~i~iwd~~~~~~--~~~~~~~~~~i~~~~~~p~~~~~~~~~~~  461 (563)
                      ..+.  .+.--.+.+.++ .++..  .+| ++.-+++.+.|+|-..+.+  ...-.-|..+|..+.+.|.+.        
T Consensus        87 DminmiKL~~lPg~a~wv-~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~D--------  157 (558)
T KOG0882|consen   87 DMINMIKLVDLPGFAEWV-TSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGD--------  157 (558)
T ss_pred             chhhhcccccCCCceEEe-cCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeecccc--------
Confidence            3221  111111222211 12211  133 3444588999999765543  223346899999999999875        


Q ss_pred             EEEEEEeCCCeEEEEeCCC------CeEEEEec---------CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeE
Q 008496          462 LILASASFDSTVKLWDVEL------GKLLYSLN---------GHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIV  526 (563)
Q Consensus       462 ~~l~s~s~dg~i~iwd~~~------~~~~~~~~---------~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~  526 (563)
                       .+.|....|.|.-|....      .+..+.++         .......++.|+|+|..+++-+.|..|+++..++|+++
T Consensus       158 -s~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklv  236 (558)
T KOG0882|consen  158 -SAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLV  236 (558)
T ss_pred             -ceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhh
Confidence             466777789999998762      22222222         23445689999999999999999999999999999887


Q ss_pred             EEEecC--------------------------------C--CEEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496          527 KTYTGN--------------------------------G--GIFEVCWNKEGDKIAACFANHTVCVLDFR  562 (563)
Q Consensus       527 ~~~~~~--------------------------------~--~i~~l~w~~~g~~la~~~~~~~v~v~~~~  562 (563)
                      +.+...                                +  .-...+|+..|+.|..+.-=| |.|+|+.
T Consensus       237 qeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~  305 (558)
T KOG0882|consen  237 QEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLD  305 (558)
T ss_pred             hhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEee
Confidence            665311                                1  124678999999999986543 7777763

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.59  E-value=2.8e-06  Score=87.14  Aligned_cols=176  Identities=19%  Similarity=0.266  Sum_probs=122.3

Q ss_pred             CceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEEEE
Q 008496          368 NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIR  447 (563)
Q Consensus       368 ~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~  447 (563)
                      +..|+.+.-+|.+++.+.....  .+...|...      +.+|.+++|||+||++.|-.+.+.+..+.+. ...++.+++
T Consensus        49 ~~~~~~GtH~g~v~~~~~~~~~--~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~d-f~rpiksia  119 (846)
T KOG2066|consen   49 DKFFALGTHRGAVYLTTCQGNP--KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQYD-FKRPIKSIA  119 (846)
T ss_pred             cceeeeccccceEEEEecCCcc--ccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeEe-cCCcceeEE
Confidence            4457777788888888765442  222233332      5689999999999999999888777655443 456899999


Q ss_pred             EccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC-C-eEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCee
Q 008496          448 WSPTGSGTNNPNQQLILASASFDSTVKLWDVEL-G-KLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKI  525 (563)
Q Consensus       448 ~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~-~-~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~  525 (563)
                      ++|+-..    .+...+++|+.-| +.++.-.= | +.-..+..-.++|.+++|.  |.+||-++.+| |+|||+.+++.
T Consensus       120 l~Pd~~~----~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~G-v~vyd~~~~~~  191 (846)
T KOG2066|consen  120 LHPDFSR----QQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDG-VKVYDTPTRQR  191 (846)
T ss_pred             eccchhh----hhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCC-cEEEeccccce
Confidence            9998321    1123578898888 77764220 1 1111344557899999994  77999999998 99999999887


Q ss_pred             EEEEecCC-------CEEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496          526 VKTYTGNG-------GIFEVCWNKEGDKIAACFANHTVCVLDFR  562 (563)
Q Consensus       526 ~~~~~~~~-------~i~~l~w~~~g~~la~~~~~~~v~v~~~~  562 (563)
                      +...+...       -...+.|.++. .|+.|-++ +|.|..+|
T Consensus       192 l~~i~~p~~~~R~e~fpphl~W~~~~-~LVIGW~d-~v~i~~I~  233 (846)
T KOG2066|consen  192 LTNIPPPSQSVRPELFPPHLHWQDED-RLVIGWGD-SVKICSIK  233 (846)
T ss_pred             eeccCCCCCCCCcccCCCceEecCCC-eEEEecCC-eEEEEEEe
Confidence            76654321       13579998764 67788665 78887776

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.59  E-value=4.2e-05  Score=71.83  Aligned_cols=213  Identities=15%  Similarity=0.139  Sum_probs=132.4

Q ss_pred             CCcEEEEECCCCceeEEeeecc--cCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEE
Q 008496          336 DKTAIVWDVKTEEWKQQFEFHS--GPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLL  413 (563)
Q Consensus       336 D~~v~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l  413 (563)
                      +++|..||+++++.+-......  ..........+..+.+++.++.++.++..+++.+..+.. .+.+.... ...+..+
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~~v   79 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDGGRV   79 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEETTEE
T ss_pred             CCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-eeccccc
Confidence            6889999999998777665422  222221232445566668999999999988887666554 22211111 1234556


Q ss_pred             EEEeCCCcEEEEeCCCCceeeee-cccC---CCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecC
Q 008496          414 ASCSDDVTAKIWNMKQDKYVHDL-REHS---KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNG  489 (563)
Q Consensus       414 as~s~dg~i~iwd~~~~~~~~~~-~~~~---~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~  489 (563)
                      +.++.++.+..+|..+++.+..+ ....   ...........+.         .++.+..++.|..+|+++|+.+.....
T Consensus        80 ~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~g~l~~~d~~tG~~~w~~~~  150 (238)
T PF13360_consen   80 YVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGD---------RLYVGTSSGKLVALDPKTGKLLWKYPV  150 (238)
T ss_dssp             EEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETT---------EEEEEETCSEEEEEETTTTEEEEEEES
T ss_pred             ccccceeeeEecccCCcceeeeeccccccccccccccCceEecC---------EEEEEeccCcEEEEecCCCcEEEEeec
Confidence            66778889999999999887663 2221   0011111111121         466677799999999999999988765


Q ss_pred             CCCC----------EEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEecCCCEEEEEEcCCCCEEEEEECCCeEEEE
Q 008496          490 HREP----------VYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVL  559 (563)
Q Consensus       490 h~~~----------i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~~~~i~~l~w~~~g~~la~~~~~~~v~v~  559 (563)
                      ...+          +..-....++ .+..++.++.+.-+|+.+++.+.... ...+.. ....++..|+++..++.+..|
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~-~~~~~~-~~~~~~~~l~~~~~~~~l~~~  227 (238)
T PF13360_consen  151 GEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKP-ISGIYS-LPSVDGGTLYVTSSDGRLYAL  227 (238)
T ss_dssp             STT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEEC-SS-ECE-CEECCCTEEEEEETTTEEEEE
T ss_pred             CCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEec-CCCccC-CceeeCCEEEEEeCCCEEEEE
Confidence            4322          1222222344 67777777764444999999765433 333333 245778888888789999999


Q ss_pred             Eee
Q 008496          560 DFR  562 (563)
Q Consensus       560 ~~~  562 (563)
                      |++
T Consensus       228 d~~  230 (238)
T PF13360_consen  228 DLK  230 (238)
T ss_dssp             ETT
T ss_pred             ECC
Confidence            975

...

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.56  E-value=3.2e-07  Score=84.83  Aligned_cols=156  Identities=13%  Similarity=0.267  Sum_probs=120.2

Q ss_pred             EEECC--CCCEEEEEeCCCeEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCC----ceeEEe
Q 008496          280 LDWNG--EGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTE----EWKQQF  353 (563)
Q Consensus       280 l~~s~--~g~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~----~~~~~~  353 (563)
                      ++|+-  .|-. ++.+.+-.|-+-+..+.....|. .++.|+++.|...++.+..|...|.|...|++.+    .+..+.
T Consensus       217 CawSlni~gyh-fs~G~sqqv~L~nvetg~~qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~r  294 (425)
T KOG2695|consen  217 CAWSLNIMGYH-FSVGLSQQVLLTNVETGHQQSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQR  294 (425)
T ss_pred             hhhhhccceee-ecccccceeEEEEeecccccccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEE
Confidence            36664  2334 45566777888888777766666 6788999999999999999999999999999876    455555


Q ss_pred             eecccCeEEEecC--CCceEEEEeCCCeEEEEEcCCCcc---eeeecCCCccee--EEEECCCCCEEEEEeCCCcEEEEe
Q 008496          354 EFHSGPTLDVDWR--NNVSFATSSTDNMIYVCKIGENRP---IKTFAGHQGEVN--CVKWDPTGSLLASCSDDVTAKIWN  426 (563)
Q Consensus       354 ~~~~~~~~~~~~~--~~~~~~~~~~d~~i~~~~~~~~~~---~~~~~~h~~~i~--~~~~~~~~~~las~s~dg~i~iwd  426 (563)
                      ..|...+.++.-.  .+..+++++.+|.|.+||.+-.+.   +..+.||-+.-.  -+-.++....++++++|...|||.
T Consensus       295 lyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWs  374 (425)
T KOG2695|consen  295 LYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWS  374 (425)
T ss_pred             EEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEe
Confidence            6677776666542  456778889999999999987666   899999965432  234466778899999999999999


Q ss_pred             CCCCceeeeec
Q 008496          427 MKQDKYVHDLR  437 (563)
Q Consensus       427 ~~~~~~~~~~~  437 (563)
                      ++.+....++.
T Consensus       375 l~~ghLl~tip  385 (425)
T KOG2695|consen  375 LDSGHLLCTIP  385 (425)
T ss_pred             cccCceeeccC
Confidence            99888776654

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.56  E-value=1.2e-05  Score=82.76  Aligned_cols=180  Identities=19%  Similarity=0.263  Sum_probs=122.4

Q ss_pred             eEEEEECCCCCEEEEEeCCCeEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeec
Q 008496          277 VTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFH  356 (563)
Q Consensus       277 V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~  356 (563)
                      ++|++++  +++|+-|+.+|.+++.+.++.. .+...|...      ...|.+++|||.||+|.|-.+-+.+...++.+ 
T Consensus        42 is~~av~--~~~~~~GtH~g~v~~~~~~~~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df-  111 (846)
T KOG2066|consen   42 ISCCAVH--DKFFALGTHRGAVYLTTCQGNP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQYDF-  111 (846)
T ss_pred             HHHHHhh--cceeeeccccceEEEEecCCcc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeEec-
Confidence            4444443  5789999999999999998877 444445544      66899999999999999887655443222211 


Q ss_pred             ccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCC-----CCEEEEEeCCCcEEEEeC---C
Q 008496          357 SGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT-----GSLLASCSDDVTAKIWNM---K  428 (563)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~-----~~~las~s~dg~i~iwd~---~  428 (563)
                                                               ..++.+++++|+     .+.+++|+.-| +.++.-   .
T Consensus       112 -----------------------------------------~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlg  149 (846)
T KOG2066|consen  112 -----------------------------------------KRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLG  149 (846)
T ss_pred             -----------------------------------------CCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhc
Confidence                                                     235677888887     56788999988 666531   1


Q ss_pred             CCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCC------EEEEEEcCC
Q 008496          429 QDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREP------VYSLAFSPT  502 (563)
Q Consensus       429 ~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~------i~~l~~spd  502 (563)
                      ....+ .+..-.++|+++.|.-+           ++|=++.+| |++||+.+++.+..+......      -..+.|.++
T Consensus       150 nk~~v-~l~~~eG~I~~i~W~g~-----------lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~  216 (846)
T KOG2066|consen  150 NKDSV-VLSEGEGPIHSIKWRGN-----------LIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDE  216 (846)
T ss_pred             Cccce-eeecCccceEEEEecCc-----------EEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCC
Confidence            12222 34556789999999643           677777666 999999988887766432222      245778776


Q ss_pred             CCEEEEEeCCCcEEEEecCCC
Q 008496          503 GEYLASGSLDKSMHIWSLKEG  523 (563)
Q Consensus       503 g~~lasgs~dg~v~iw~~~~~  523 (563)
                      .+.+ .|= ..+|+|..++.+
T Consensus       217 ~~LV-IGW-~d~v~i~~I~~~  235 (846)
T KOG2066|consen  217 DRLV-IGW-GDSVKICSIKKR  235 (846)
T ss_pred             CeEE-Eec-CCeEEEEEEecc
Confidence            5544 443 346889888743

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.48  E-value=0.00044  Score=65.21  Aligned_cols=246  Identities=16%  Similarity=0.148  Sum_probs=138.6

Q ss_pred             eEEEEECCC-CCEEEEeeCCC-cEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEEeCC
Q 008496          218 VCACAWSPA-GSLLASGSGDS-TARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYD  295 (563)
Q Consensus       218 V~~~~~sp~-~~~latgs~D~-~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~d  295 (563)
                      ...++.+|. ...+|.+-.-| .+.+||..++.........     .-+|+.+|          -.||+||++|++.-.|
T Consensus         7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~-----~gRHFyGH----------g~fs~dG~~LytTEnd   71 (305)
T PF07433_consen    7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAP-----PGRHFYGH----------GVFSPDGRLLYTTEND   71 (305)
T ss_pred             ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCC-----CCCEEecC----------EEEcCCCCEEEEeccc
Confidence            346788884 56677776555 4778888776532111100     01222222          3699999999987443


Q ss_pred             -----CeEEEEEcCCc--eeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecCCC
Q 008496          296 -----GQARIWSTNGD--LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNN  368 (563)
Q Consensus       296 -----g~i~vw~~~~~--~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  368 (563)
                           |.|-|||....  ....+..|.-.-..+.+.|+|..|+.+..  -|.- ...++..+-.+               
T Consensus        72 ~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANG--GI~T-hpd~GR~kLNl---------------  133 (305)
T PF07433_consen   72 YETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANG--GIET-HPDSGRAKLNL---------------  133 (305)
T ss_pred             cCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcC--CCcc-CcccCceecCh---------------
Confidence                 89999998833  34467666666678889999988877642  1110 00111100000               


Q ss_pred             ceEEEEeCCCeEEEEEcCCCcceee--e--cCCCcceeEEEECCCCCEEEEEeCCCc-------EEEEeCCCCceeeee-
Q 008496          369 VSFATSSTDNMIYVCKIGENRPIKT--F--AGHQGEVNCVKWDPTGSLLASCSDDVT-------AKIWNMKQDKYVHDL-  436 (563)
Q Consensus       369 ~~~~~~~~d~~i~~~~~~~~~~~~~--~--~~h~~~i~~~~~~~~~~~las~s~dg~-------i~iwd~~~~~~~~~~-  436 (563)
                           ...+-.+...+..++..+..  +  .-|...|.-++++++|..++.+-..|.       +-+++.  +.....+ 
T Consensus       134 -----~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~  206 (305)
T PF07433_consen  134 -----DTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR--GGALRLLP  206 (305)
T ss_pred             -----hhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcC--CCcceecc
Confidence                 00111122222222322222  2  225556777777777766655544332       222222  2211111 


Q ss_pred             ------cccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEe
Q 008496          437 ------REHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGS  510 (563)
Q Consensus       437 ------~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs  510 (563)
                            ..-.+.+-+|++++++.        .+.+|+=.-+.+.+||..+++.+....-.  .+..++-.+++ +++|.+
T Consensus       207 ~p~~~~~~l~~Y~gSIa~~~~g~--------~ia~tsPrGg~~~~~d~~tg~~~~~~~l~--D~cGva~~~~~-f~~ssG  275 (305)
T PF07433_consen  207 APEEQWRRLNGYIGSIAADRDGR--------LIAVTSPRGGRVAVWDAATGRLLGSVPLP--DACGVAPTDDG-FLVSSG  275 (305)
T ss_pred             CChHHHHhhCCceEEEEEeCCCC--------EEEEECCCCCEEEEEECCCCCEeeccccC--ceeeeeecCCc-eEEeCC
Confidence                  12345688899988764        46677778899999999999988765432  35677777777 666544


Q ss_pred             CCCcE
Q 008496          511 LDKSM  515 (563)
Q Consensus       511 ~dg~v  515 (563)
                       .|.+
T Consensus       276 -~G~~  279 (305)
T PF07433_consen  276 -QGQL  279 (305)
T ss_pred             -CccE
Confidence             3443

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.47  E-value=7.1e-06  Score=73.22  Aligned_cols=160  Identities=17%  Similarity=0.212  Sum_probs=97.8

Q ss_pred             eeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCc-eeEEeeecccCeEEEecCCCceEEEEeCCC------eEEE
Q 008496          310 TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEE-WKQQFEFHSGPTLDVDWRNNVSFATSSTDN------MIYV  382 (563)
Q Consensus       310 ~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~------~i~~  382 (563)
                      .+..|+.+-.+-..+--++.++++..||.+.+.+.+.-. ...+.........+.+......++.+..=+      ..+.
T Consensus        84 ~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a  163 (319)
T KOG4714|consen   84 VLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYA  163 (319)
T ss_pred             eeeccCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceee
Confidence            444565554444445557789999999999999876411 111111111011111111222333333222      2344


Q ss_pred             EEcCCCcceeeecC---CCcceeEEEECCCC-CEEEEEeCCCcEEEEeCCCCce-eeeecccCCCEEEEEEccCCCCCCC
Q 008496          383 CKIGENRPIKTFAG---HQGEVNCVKWDPTG-SLLASCSDDVTAKIWNMKQDKY-VHDLREHSKEIYTIRWSPTGSGTNN  457 (563)
Q Consensus       383 ~~~~~~~~~~~~~~---h~~~i~~~~~~~~~-~~las~s~dg~i~iwd~~~~~~-~~~~~~~~~~i~~~~~~p~~~~~~~  457 (563)
                      |+++.   +.++..   ....|.+++-+|.. .++++|++||.+-+||++.... +..+.+|..+|.-+.|+|....   
T Consensus       164 ~~~~p---~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~---  237 (319)
T KOG4714|consen  164 NTLDP---IKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPE---  237 (319)
T ss_pred             ecccc---cccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCch---
Confidence            44433   333321   12348899999865 5667888999999999987644 4567789999999999996532   


Q ss_pred             CCCcEEEEEEeCCCeEEEEeCCC
Q 008496          458 PNQQLILASASFDSTVKLWDVEL  480 (563)
Q Consensus       458 ~~~~~~l~s~s~dg~i~iwd~~~  480 (563)
                           -|++++.||.+--||..+
T Consensus       238 -----~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  238 -----HLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             -----heeEecCCCcEEEEcCCC
Confidence                 478999999999999764

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.47  E-value=3.4e-05  Score=73.16  Aligned_cols=244  Identities=14%  Similarity=0.133  Sum_probs=133.5

Q ss_pred             cCCCCeEEEEECCCCC-EEEEEeCCCeEEEEEcCCceeE-eeccCCCCEEEEEeCCCC-CEEEEeeCCCcEEEEECCCCc
Q 008496          272 EKSKDVTTLDWNGEGT-LLATGSYDGQARIWSTNGDLKC-TLSKHKGPIFSLKWNKKG-DYLLTGSCDKTAIVWDVKTEE  348 (563)
Q Consensus       272 ~~~~~V~~l~~s~~g~-~l~sg~~dg~i~vw~~~~~~~~-~~~~h~~~V~~l~~~~~~-~~l~s~s~D~~v~iwd~~~~~  348 (563)
                      .+...|..++|||..+ ++..++.+..|+|.|....... .+..| .++++++|.-+. ++++.|...|.|.|||++..+
T Consensus       191 ~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~  269 (463)
T KOG1645|consen  191 GEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPE  269 (463)
T ss_pred             ccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEccCCC
Confidence            3456799999999877 7889999999999998765443 44455 899999998765 678899999999999997543


Q ss_pred             ee-EEe--eecccCeEEEecCCCc-------eEEEEeCCCeEEEEEcC--CCcceeee-cCCCcceeEEEECCCCCEE-E
Q 008496          349 WK-QQF--EFHSGPTLDVDWRNNV-------SFATSSTDNMIYVCKIG--ENRPIKTF-AGHQGEVNCVKWDPTGSLL-A  414 (563)
Q Consensus       349 ~~-~~~--~~~~~~~~~~~~~~~~-------~~~~~~~d~~i~~~~~~--~~~~~~~~-~~h~~~i~~~~~~~~~~~l-a  414 (563)
                      -. ..+  .....|+..+......       .++....+-  ..|.+.  ...+..++ .+..+.+.++++++..+.+ +
T Consensus       270 ~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~l--~f~ei~~s~~~~p~vlele~pG~cismqy~~~snh~l~  347 (463)
T KOG1645|consen  270 GPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTVL--QFYEIVFSAECLPCVLELEPPGICISMQYHGVSNHLLL  347 (463)
T ss_pred             chHhhhhhhhccCcceeecccCccccccccceEEeeehhh--hhhhhhccccCCCcccccCCCcceeeeeecCccceEEE
Confidence            11 111  1122344444432211       122222221  122221  11111111 1223455566666644443 3


Q ss_pred             EEeCCCc---EE---E-EeCCCCceeeeec-ccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEE
Q 008496          415 SCSDDVT---AK---I-WNMKQDKYVHDLR-EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYS  486 (563)
Q Consensus       415 s~s~dg~---i~---i-wd~~~~~~~~~~~-~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~  486 (563)
                      |.-.+-.   ++   . -|...+.++..-+ .+.+ ...-..+........++...++..+..-+.+.+||+.+.+.+.+
T Consensus       348 tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~G-s~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s~evvQ~  426 (463)
T KOG1645|consen  348 TYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFG-SKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHSFEVVQT  426 (463)
T ss_pred             EecCCCCCccceeeeeeeccccCceeeeecccccC-CcccccccccceeccccccEEEEecCCcceeEEeccchhheeee
Confidence            3322210   11   0 1122232222111 1100 00000000000011122345677788888999999999999988


Q ss_pred             ecCCCCCEEEEEEcC-C-CCEEEEEeCCCcEEEEecC
Q 008496          487 LNGHREPVYSLAFSP-T-GEYLASGSLDKSMHIWSLK  521 (563)
Q Consensus       487 ~~~h~~~i~~l~~sp-d-g~~lasgs~dg~v~iw~~~  521 (563)
                      +.- ..+|..++... + +.||++-. |..++||..+
T Consensus       427 l~~-~epv~Dicp~~~n~~syLa~LT-d~~v~Iyk~e  461 (463)
T KOG1645|consen  427 LAL-SEPVLDICPNDTNGSSYLALLT-DDRVHIYKNE  461 (463)
T ss_pred             ccc-CcceeecceeecCCcchhhhee-cceEEEEecC
Confidence            863 47899887654 3 35777655 4568888654

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.46  E-value=9.4e-06  Score=83.59  Aligned_cols=107  Identities=26%  Similarity=0.450  Sum_probs=81.9

Q ss_pred             EEEECCCCCEEEEee----CCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEEeCC
Q 008496          220 ACAWSPAGSLLASGS----GDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYD  295 (563)
Q Consensus       220 ~~~~sp~~~~latgs----~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~d  295 (563)
                      -.+|||...+||.++    ..|.+.||- .+|....             ++     ...-.+++++|+|..-.|+.|-.-
T Consensus        20 i~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr-------------~V-----t~P~hatSLCWHpe~~vLa~gwe~   80 (1416)
T KOG3617|consen   20 ISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQR-------------DV-----TYPVHATSLCWHPEEFVLAQGWEM   80 (1416)
T ss_pred             ccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCc-------------cc-----ccceehhhhccChHHHHHhhcccc
Confidence            457999999988876    356777773 2222110             00     011236789999999999999999


Q ss_pred             CeEEEEEcCCceeEe-eccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECC
Q 008496          296 GQARIWSTNGDLKCT-LSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVK  345 (563)
Q Consensus       296 g~i~vw~~~~~~~~~-~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~  345 (563)
                      |.+.+|..+.....+ ...|+.+|..+.||++|+.++++..-|.|.+|...
T Consensus        81 g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   81 GVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             ceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence            999999988765554 45699999999999999999999999999999654

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.46  E-value=3.5e-06  Score=75.11  Aligned_cols=164  Identities=15%  Similarity=0.207  Sum_probs=95.1

Q ss_pred             EecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEE
Q 008496          210 ILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLL  289 (563)
Q Consensus       210 ~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l  289 (563)
                      ++..|+.+-.+-+.+--++.+++|..||.+.+.+...-..             +.+   .....+..--+.+.-..++.+
T Consensus        84 ~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~-------------~~~---~i~~~~~~~as~~~~~~~~~i  147 (319)
T KOG4714|consen   84 VLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLA-------------LMS---RIPSIHSGSASRKICRHGNSI  147 (319)
T ss_pred             eeeccCCCCCcccccccCCceEecCCCceEEEEechHHHh-------------hhh---hcccccccccccceeecccEE
Confidence            3334444333334455677899999999999988643100             000   000000001111122234444


Q ss_pred             EEEeC-----CCeEEEEEcCCceeE-eeccCCCCEEEEEeCCCCC-EEEEeeCCCcEEEEECCCCceeEEeeecccCeEE
Q 008496          290 ATGSY-----DGQARIWSTNGDLKC-TLSKHKGPIFSLKWNKKGD-YLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLD  362 (563)
Q Consensus       290 ~sg~~-----dg~i~vw~~~~~~~~-~~~~h~~~V~~l~~~~~~~-~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~  362 (563)
                      .++..     -+..++|+.+..... .-..-...|++++-+|..+ .+++|+.||.+-+||.+...              
T Consensus       148 ~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~--------------  213 (319)
T KOG4714|consen  148 LSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVA--------------  213 (319)
T ss_pred             ecCCcceEeeccceeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEccccc--------------
Confidence            44321     123445554322110 0011123488898888665 45677888999999987541              


Q ss_pred             EecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCC-CCEEEEEeCCCcEEEEeCCC
Q 008496          363 VDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT-GSLLASCSDDVTAKIWNMKQ  429 (563)
Q Consensus       363 ~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~-~~~las~s~dg~i~iwd~~~  429 (563)
                                                .|+..+..|+.+|+.+-|+|. +..|++|++||.+..||..+
T Consensus       214 --------------------------~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  214 --------------------------MPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             --------------------------chHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence                                      244567789999999999995 56789999999999999764

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.43  E-value=0.00032  Score=75.82  Aligned_cols=234  Identities=18%  Similarity=0.253  Sum_probs=129.5

Q ss_pred             CceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEEeCC
Q 008496          216 SEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYD  295 (563)
Q Consensus       216 ~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~d  295 (563)
                      +.|.++.|.-++.-++.+..+|.|.+-|..+...            .+   .   ......|.+++||||+..++..+..
T Consensus        69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~------------ei---v---g~vd~GI~aaswS~Dee~l~liT~~  130 (1265)
T KOG1920|consen   69 DEIVSVQFLADTNSICVITALGDIILVDPETLEL------------EI---V---GNVDNGISAASWSPDEELLALITGR  130 (1265)
T ss_pred             cceEEEEEecccceEEEEecCCcEEEEcccccce------------ee---e---eeccCceEEEeecCCCcEEEEEeCC
Confidence            5788999999998888888899998887654321            00   0   1124679999999999999999998


Q ss_pred             CeEEEEEcCCceeEeecc-----CCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCC-CceeEEeeecccCeEEEecCCCc
Q 008496          296 GQARIWSTNGDLKCTLSK-----HKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKT-EEWKQQFEFHSGPTLDVDWRNNV  369 (563)
Q Consensus       296 g~i~vw~~~~~~~~~~~~-----h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~  369 (563)
                      +++.+-+.+-.+...-.-     -.+....+-|-...+.|= |+. |....-+... .+...... ....-..+.|+.+.
T Consensus       131 ~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfr-gs~-gr~~~~~~~~~ek~~~~~~-~~~~~~~IsWRgDg  207 (1265)
T KOG1920|consen  131 QTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFR-GSE-GRQAARQKIEKEKALEQIE-QDDHKTSISWRGDG  207 (1265)
T ss_pred             cEEEEEeccccchhccccccccccccccceecccccceeee-cch-hhhcccccccccccccchh-hccCCceEEEccCC
Confidence            888876543222111100     112223344433322221 111 1111111000 00000000 11122458899887


Q ss_pred             e-EEEE----eCC-CeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEe---CCCcEEEEeCC---CCceeeeec
Q 008496          370 S-FATS----STD-NMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCS---DDVTAKIWNMK---QDKYVHDLR  437 (563)
Q Consensus       370 ~-~~~~----~~d-~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s---~dg~i~iwd~~---~~~~~~~~~  437 (563)
                      . |+++    ..+ ..|++|+.. +..-.+-..-.+.=.+++|-|.|.++|+-.   .|+.|.++.-+   .+..+..+.
T Consensus       208 ~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p  286 (1265)
T KOG1920|consen  208 EYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFP  286 (1265)
T ss_pred             cEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCc
Confidence            4 4442    344 789999876 211111111122335799999999998753   35578888633   222222233


Q ss_pred             ccCCCEEEEEEccCCCCCCCCCCcEEEEE---EeCCCeEEEEeCCC
Q 008496          438 EHSKEIYTIRWSPTGSGTNNPNQQLILAS---ASFDSTVKLWDVEL  480 (563)
Q Consensus       438 ~~~~~i~~~~~~p~~~~~~~~~~~~~l~s---~s~dg~i~iwd~~~  480 (563)
                      ....++..++|+.++.         +||.   ......|++|-+.+
T Consensus       287 ~de~~ve~L~Wns~sd---------iLAv~~~~~e~~~v~lwt~~N  323 (1265)
T KOG1920|consen  287 LDEKEVEELAWNSNSD---------ILAVVTSNLENSLVQLWTTGN  323 (1265)
T ss_pred             ccccchheeeecCCCC---------ceeeeecccccceEEEEEecC
Confidence            3344589999988765         4554   34444599998765

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.41  E-value=1.8e-07  Score=96.14  Aligned_cols=217  Identities=18%  Similarity=0.268  Sum_probs=146.7

Q ss_pred             EeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecCCCce-EEE-EeCCC-eEEEEEc
Q 008496          309 CTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVS-FAT-SSTDN-MIYVCKI  385 (563)
Q Consensus       309 ~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~d~-~i~~~~~  385 (563)
                      .++..|+..-++++|+-+.++|+.|+..|.|+++++.+|.-...+.+|..++..+....+.. ..+ ++... -..+|+.
T Consensus      1095 ~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~ 1174 (1516)
T KOG1832|consen 1095 RSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDA 1174 (1516)
T ss_pred             hhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhcc
Confidence            35677888999999999999999999999999999999998889999999888777654332 222 22222 3456776


Q ss_pred             CC-CcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeee-cc---cCCCEEEEEEccCCCCCCCCCC
Q 008496          386 GE-NRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDL-RE---HSKEIYTIRWSPTGSGTNNPNQ  460 (563)
Q Consensus       386 ~~-~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~-~~---~~~~i~~~~~~p~~~~~~~~~~  460 (563)
                      +. ..+..+|.    .-.++.|+.....-+.|..-..+.|||+.++..+.++ ..   ..-.-....|+|...       
T Consensus      1175 ~s~~~~~Hsf~----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~------- 1243 (1516)
T KOG1832|consen 1175 SSTGGPRHSFD----EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDT------- 1243 (1516)
T ss_pred             ccccCcccccc----ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcc-------
Confidence            54 33444554    3457888866554455555567889999988766542 21   111224556666543       


Q ss_pred             cEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEecCCCEEEEEE
Q 008496          461 QLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCW  540 (563)
Q Consensus       461 ~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~~~~i~~l~w  540 (563)
                       ++|    .||  .+||++..+.++.+...... ..-.|+|.|.-++.-+.     |||+++.+++++...-. -+.+.|
T Consensus      1244 -LIl----ndG--vLWDvR~~~aIh~FD~ft~~-~~G~FHP~g~eVIINSE-----IwD~RTF~lLh~VP~Ld-qc~VtF 1309 (1516)
T KOG1832|consen 1244 -LIL----NDG--VLWDVRIPEAIHRFDQFTDY-GGGGFHPSGNEVIINSE-----IWDMRTFKLLHSVPSLD-QCAVTF 1309 (1516)
T ss_pred             -eEe----eCc--eeeeeccHHHHhhhhhheec-ccccccCCCceEEeech-----hhhhHHHHHHhcCcccc-ceEEEe
Confidence             332    455  46999988877776544322 23469999998887553     89999988877654211 256778


Q ss_pred             cCCCCEEEEE
Q 008496          541 NKEGDKIAAC  550 (563)
Q Consensus       541 ~~~g~~la~~  550 (563)
                      +..|+.+.+.
T Consensus      1310 NstG~VmYa~ 1319 (1516)
T KOG1832|consen 1310 NSTGDVMYAM 1319 (1516)
T ss_pred             ccCccchhhh
Confidence            8888765544

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.40  E-value=0.00024  Score=73.13  Aligned_cols=172  Identities=11%  Similarity=0.145  Sum_probs=102.3

Q ss_pred             CeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCC
Q 008496          378 NMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNN  457 (563)
Q Consensus       378 ~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~  457 (563)
                      +.+.+.|..+.+.+.++.- .+....++++|+|+++++.+.+..       .+..+..+...... ..+.|.+.+.....
T Consensus       215 ~~vSvID~etmeV~~qV~V-dgnpd~v~~spdGk~afvTsyNsE-------~G~tl~em~a~e~d-~~vvfni~~iea~v  285 (635)
T PRK02888        215 SLFTAVDAETMEVAWQVMV-DGNLDNVDTDYDGKYAFSTCYNSE-------EGVTLAEMMAAERD-WVVVFNIARIEEAV  285 (635)
T ss_pred             EEEEEEECccceEEEEEEe-CCCcccceECCCCCEEEEeccCcc-------cCcceeeeccccCc-eEEEEchHHHHHhh
Confidence            3444455544333333221 113356788999999877763221       11122222111111 33444433211111


Q ss_pred             CCCcEEEEEEeCCCeEEEEeCCC----C-eEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCCcEEEEecCCCe-------
Q 008496          458 PNQQLILASASFDSTVKLWDVEL----G-KLLYSLNGHREPVYSLAFSPTGEYLASGS-LDKSMHIWSLKEGK-------  524 (563)
Q Consensus       458 ~~~~~~l~s~s~dg~i~iwd~~~----~-~~~~~~~~h~~~i~~l~~spdg~~lasgs-~dg~v~iw~~~~~~-------  524 (563)
                      ++.....+   .++.|.+.|.++    + +.+..+.- ......+.+||||+++++++ .+.+|.|.|+.+.+       
T Consensus       286 kdGK~~~V---~gn~V~VID~~t~~~~~~~v~~yIPV-GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~  361 (635)
T PRK02888        286 KAGKFKTI---GGSKVPVVDGRKAANAGSALTRYVPV-PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKI  361 (635)
T ss_pred             hCCCEEEE---CCCEEEEEECCccccCCcceEEEEEC-CCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccC
Confidence            22223333   357899999987    3 44444432 33458899999999886654 58999999998754       


Q ss_pred             -----eEEEEecCCCEEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496          525 -----IVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLDFR  562 (563)
Q Consensus       525 -----~~~~~~~~~~i~~l~w~~~g~~la~~~~~~~v~v~~~~  562 (563)
                           ++....-.-+....+|+++|+...+.+.|..|+.||+.
T Consensus       362 ~~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~  404 (635)
T PRK02888        362 KPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIE  404 (635)
T ss_pred             CccceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEEehH
Confidence                 34444444556789999999988888999999999974

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.33  E-value=1.4e-05  Score=83.25  Aligned_cols=178  Identities=16%  Similarity=0.170  Sum_probs=129.4

Q ss_pred             ceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEEEEE
Q 008496          369 VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRW  448 (563)
Q Consensus       369 ~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~  448 (563)
                      ..++.++-...+..+|+...+..+...-..+.|.-++.  +++++.+|...|+|.+-|.++.+.++++.+|++.|..+..
T Consensus       148 ~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv  225 (1118)
T KOG1275|consen  148 STLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDV  225 (1118)
T ss_pred             cceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccccceeeeec
Confidence            44555666666777777776655554433434555554  6789999999999999999999999999999999887765


Q ss_pred             ccCCCCCCCCCCcEEEEEEeC---------CCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCC-CCEEEEEeCCCcEEEE
Q 008496          449 SPTGSGTNNPNQQLILASASF---------DSTVKLWDVELGKLLYSLNGHREPVYSLAFSPT-GEYLASGSLDKSMHIW  518 (563)
Q Consensus       449 ~p~~~~~~~~~~~~~l~s~s~---------dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spd-g~~lasgs~dg~v~iw  518 (563)
                      +-+           +|++++.         |..|++||++.-+.+.-+.-+.+| .=+.|.|. ...+|++|..|...+-
T Consensus       226 ~GN-----------lLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~v  293 (1118)
T KOG1275|consen  226 QGN-----------LLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFV  293 (1118)
T ss_pred             cCC-----------eEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEecccceeec
Confidence            322           5666654         667899999987776655555554 44678886 4678888999999998


Q ss_pred             ecCCCe----eEEEEec-CCCEEEEEEcCCCCEEEEEECCCeEEEEE
Q 008496          519 SLKEGK----IVKTYTG-NGGIFEVCWNKEGDKIAACFANHTVCVLD  560 (563)
Q Consensus       519 ~~~~~~----~~~~~~~-~~~i~~l~w~~~g~~la~~~~~~~v~v~~  560 (563)
                      |..+..    -+..... ...+..+++++.|+.||.|-..|.|.+|-
T Consensus       294 d~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  294 DTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             cccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence            843211    1222222 33489999999999999999999999883

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.33  E-value=8.8e-05  Score=75.52  Aligned_cols=147  Identities=16%  Similarity=0.262  Sum_probs=101.6

Q ss_pred             CCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEEe
Q 008496          214 HTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGS  293 (563)
Q Consensus       214 h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~  293 (563)
                      |...|.--+++..+++++.|+.-|.+.+|+-..+.....              +.  ......+..+..|++..++|.|+
T Consensus        32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~--------------~~--~~~~~~~~~~~vs~~e~lvAagt   95 (726)
T KOG3621|consen   32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKL--------------KN--EGATGITCVRSVSSVEYLVAAGT   95 (726)
T ss_pred             CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcc--------------cc--cCccceEEEEEecchhHhhhhhc
Confidence            334555566778899999999999999998655432110              00  01234466678899999999999


Q ss_pred             CCCeEEEEEcCCc----eeEee---ccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCc----eeEEeeecccCeEE
Q 008496          294 YDGQARIWSTNGD----LKCTL---SKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEE----WKQQFEFHSGPTLD  362 (563)
Q Consensus       294 ~dg~i~vw~~~~~----~~~~~---~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~----~~~~~~~~~~~~~~  362 (563)
                      ..|.|.++..+..    +...-   ..|+..|++++|++++..+++|...|+|.+-.+.+..    ..+.+.....+++.
T Consensus        96 ~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQ  175 (726)
T KOG3621|consen   96 ASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQ  175 (726)
T ss_pred             CCceEEeehhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEE
Confidence            9999999976532    22211   2378899999999999999999999999988776621    12233334556777


Q ss_pred             EecCCCceEEEEeC
Q 008496          363 VDWRNNVSFATSST  376 (563)
Q Consensus       363 ~~~~~~~~~~~~~~  376 (563)
                      ++......+++...
T Consensus       176 lD~~q~~LLVStl~  189 (726)
T KOG3621|consen  176 LDYLQSYLLVSTLT  189 (726)
T ss_pred             eecccceehHhhhh
Confidence            77766655554443

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.31  E-value=6.5e-05  Score=71.33  Aligned_cols=240  Identities=13%  Similarity=0.146  Sum_probs=139.0

Q ss_pred             eeccCCCCEEEEEeCCCCC-EEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecCC--CceEEEEeCCCeEEEEEcC
Q 008496          310 TLSKHKGPIFSLKWNKKGD-YLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN--NVSFATSSTDNMIYVCKIG  386 (563)
Q Consensus       310 ~~~~h~~~V~~l~~~~~~~-~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~i~~~~~~  386 (563)
                      .+..|...|..++|+|..+ .+..++.++.|+|.|+++..++..+..+ .++.+.+|.-  ...+.++-.+|.|+++|++
T Consensus       188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R  266 (463)
T KOG1645|consen  188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMR  266 (463)
T ss_pred             cccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEcc
Confidence            5677888999999999887 5778999999999999999988888777 6788888853  3445677789999999997


Q ss_pred             CCc-ceeeecC--CCcceeEE------EECCCCCEEEEEeCCCcEEEEeCCC--Cceeeeec-ccCCCEEEEEEccCCCC
Q 008496          387 ENR-PIKTFAG--HQGEVNCV------KWDPTGSLLASCSDDVTAKIWNMKQ--DKYVHDLR-EHSKEIYTIRWSPTGSG  454 (563)
Q Consensus       387 ~~~-~~~~~~~--h~~~i~~~------~~~~~~~~las~s~dg~i~iwd~~~--~~~~~~~~-~~~~~i~~~~~~p~~~~  454 (563)
                      ... ++..+.+  ...+|..+      ...+.|.+++..+.+  +..|...-  +.....+. +..+.+.+.++.+... 
T Consensus       267 ~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismqy~~~sn-  343 (463)
T KOG1645|consen  267 QPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQYHGVSN-  343 (463)
T ss_pred             CCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeeeecCccc-
Confidence            643 3333322  11223222      234455666555544  34555421  11111111 1123333333333211 


Q ss_pred             CCCCCCcEEEEEEeCCCe---EE---E-EeCCCCeEEEEec-CC-CC---C---EEEEEEcCCCCEEE-EEeCCCcEEEE
Q 008496          455 TNNPNQQLILASASFDST---VK---L-WDVELGKLLYSLN-GH-RE---P---VYSLAFSPTGEYLA-SGSLDKSMHIW  518 (563)
Q Consensus       455 ~~~~~~~~~l~s~s~dg~---i~---i-wd~~~~~~~~~~~-~h-~~---~---i~~l~~spdg~~la-sgs~dg~v~iw  518 (563)
                             .+|+|.-.+.+   ++   . -|-.+|..+...+ ++ ..   +   -..+.-.++.++|+ .|+..+.+.+|
T Consensus       344 -------h~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~  416 (463)
T KOG1645|consen  344 -------HLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQ  416 (463)
T ss_pred             -------eEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEe
Confidence                   12222211100   00   0 0112232222111 11 00   0   01122245656665 45666899999


Q ss_pred             ecCCCeeEEEEecCCCEEEEEEcC-CC-CEEEEEECCCeEEEEEe
Q 008496          519 SLKEGKIVKTYTGNGGIFEVCWNK-EG-DKIAACFANHTVCVLDF  561 (563)
Q Consensus       519 ~~~~~~~~~~~~~~~~i~~l~w~~-~g-~~la~~~~~~~v~v~~~  561 (563)
                      |+.++++++++.-+..|.+++-.. .| .+||+- .|..+.||.+
T Consensus       417 D~~s~evvQ~l~~~epv~Dicp~~~n~~syLa~L-Td~~v~Iyk~  460 (463)
T KOG1645|consen  417 DPHSFEVVQTLALSEPVLDICPNDTNGSSYLALL-TDDRVHIYKN  460 (463)
T ss_pred             ccchhheeeecccCcceeecceeecCCcchhhhe-ecceEEEEec
Confidence            999999999999989999988554 44 455555 5557888864

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.31  E-value=0.00023  Score=74.14  Aligned_cols=212  Identities=11%  Similarity=0.095  Sum_probs=133.7

Q ss_pred             EECCCCCEEEEEeCCCeEEEEEcCCceeEeeccCCCC-EEEEEeCCCCCEEEEeeCCC-----cEEEEECCCCceeEEee
Q 008496          281 DWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGP-IFSLKWNKKGDYLLTGSCDK-----TAIVWDVKTEEWKQQFE  354 (563)
Q Consensus       281 ~~s~~g~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~-V~~l~~~~~~~~l~s~s~D~-----~v~iwd~~~~~~~~~~~  354 (563)
                      +|++.+..++.|+.+|.|.+.+..-+....+..+... |..+....+.++|++.+.|+     .++|||+..-+--.   
T Consensus        30 c~~s~~~~vvigt~~G~V~~Ln~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~---  106 (933)
T KOG2114|consen   30 CCSSSTGSVVIGTADGRVVILNSSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNN---  106 (933)
T ss_pred             EEcCCCceEEEeeccccEEEecccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCC---
Confidence            4788999999999999999988766666777777766 55444333446788877765     48999986432000   


Q ss_pred             ecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCC--CCce
Q 008496          355 FHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMK--QDKY  432 (563)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~--~~~~  432 (563)
                         .| .++              +.++++...       +.....++.+++.+.+-+.+|.|-.+|.|.++.-+  ..+-
T Consensus       107 ---sP-~c~--------------~~~ri~~~~-------np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrg  161 (933)
T KOG2114|consen  107 ---SP-QCL--------------YEHRIFTIK-------NPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRG  161 (933)
T ss_pred             ---Cc-cee--------------eeeeeeccC-------CCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccc
Confidence               00 000              001111111       11124567889999998999999999999988532  1111


Q ss_pred             --eeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeE-EEEecCCCCCEEEEEEcCCCCEEEEE
Q 008496          433 --VHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKL-LYSLNGHREPVYSLAFSPTGEYLASG  509 (563)
Q Consensus       433 --~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~-~~~~~~h~~~i~~l~~spdg~~lasg  509 (563)
                        ..-......+|+.+.+..++..        .+. ...-..|.+|.+....+ +..+..|..+.+|.+|++...-++.|
T Consensus       162 sr~~~~~~~~~pITgL~~~~d~~s--------~lF-v~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca  232 (933)
T KOG2114|consen  162 SRQDYSHRGKEPITGLALRSDGKS--------VLF-VATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICA  232 (933)
T ss_pred             cceeeeccCCCCceeeEEecCCce--------eEE-EEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEe
Confidence              1111223568999999877652        122 22345799999884332 44577788899999999866534444


Q ss_pred             eCCCcEEEEecCCCeeEEEEe
Q 008496          510 SLDKSMHIWSLKEGKIVKTYT  530 (563)
Q Consensus       510 s~dg~v~iw~~~~~~~~~~~~  530 (563)
                      +.. .|.+|+....++-.+|.
T Consensus       233 ~~e-~l~fY~sd~~~~cfaf~  252 (933)
T KOG2114|consen  233 GSE-FLYFYDSDGRGPCFAFE  252 (933)
T ss_pred             cCc-eEEEEcCCCcceeeeec
Confidence            433 49999987655444444

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.29  E-value=0.00041  Score=70.52  Aligned_cols=260  Identities=9%  Similarity=0.034  Sum_probs=143.9

Q ss_pred             CCEEEEEeCCCeEEEEEcC-CceeEeeccCC--CCEE-----EEEeCC--CCCEEEEeeCCCcEEEEECCCCceeEEeee
Q 008496          286 GTLLATGSYDGQARIWSTN-GDLKCTLSKHK--GPIF-----SLKWNK--KGDYLLTGSCDKTAIVWDVKTEEWKQQFEF  355 (563)
Q Consensus       286 g~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~--~~V~-----~l~~~~--~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~  355 (563)
                      +..+++++.+|.+..+|.. |+......-..  ....     .+.-.|  .+..++.++.++.+..+|..+++..-+...
T Consensus        69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~  148 (394)
T PRK11138         69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQTKV  148 (394)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCcccccC
Confidence            4456666677777777753 55443322111  0000     000011  356778888899999999999886655443


Q ss_pred             cccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcce-----eEEEECCCCCEEEEEeCCCcEEEEeCCCC
Q 008496          356 HSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEV-----NCVKWDPTGSLLASCSDDVTAKIWNMKQD  430 (563)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i-----~~~~~~~~~~~las~s~dg~i~iwd~~~~  430 (563)
                      ... +...-...+..++....++.++.+|..+++.+-.+......+     .+...  .+..++.++.+|.+..+|..++
T Consensus       149 ~~~-~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v--~~~~v~~~~~~g~v~a~d~~~G  225 (394)
T PRK11138        149 AGE-ALSRPVVSDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPAT--AFGGAIVGGDNGRVSAVLMEQG  225 (394)
T ss_pred             CCc-eecCCEEECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEE--ECCEEEEEcCCCEEEEEEccCC
Confidence            221 111000113345556778889988988877665544221100     01111  1234666778888988888887


Q ss_pred             ceeeeecccCC----C---EEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCC
Q 008496          431 KYVHDLREHSK----E---IYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTG  503 (563)
Q Consensus       431 ~~~~~~~~~~~----~---i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg  503 (563)
                      +.+........    .   ...+.-+|.-     .++  .+..++.+|.+..+|..+|+.++...-.  ....+.  .++
T Consensus       226 ~~~W~~~~~~~~~~~~~~~~~~~~~sP~v-----~~~--~vy~~~~~g~l~ald~~tG~~~W~~~~~--~~~~~~--~~~  294 (394)
T PRK11138        226 QLIWQQRISQPTGATEIDRLVDVDTTPVV-----VGG--VVYALAYNGNLVALDLRSGQIVWKREYG--SVNDFA--VDG  294 (394)
T ss_pred             hhhheeccccCCCccchhcccccCCCcEE-----ECC--EEEEEEcCCeEEEEECCCCCEEEeecCC--CccCcE--EEC
Confidence            76543321100    0   0000011100     011  3455678899999999999988765421  111222  245


Q ss_pred             CEEEEEeCCCcEEEEecCCCeeEEEEec-CCC-EEEEEEcCCCCEEEEEECCCeEEEEEe
Q 008496          504 EYLASGSLDKSMHIWSLKEGKIVKTYTG-NGG-IFEVCWNKEGDKIAACFANHTVCVLDF  561 (563)
Q Consensus       504 ~~lasgs~dg~v~iw~~~~~~~~~~~~~-~~~-i~~l~w~~~g~~la~~~~~~~v~v~~~  561 (563)
                      ..|..++.+|.|..+|..+|+.+..... ... ..+...  .+.+|.++..+|.+.++|.
T Consensus       295 ~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~  352 (394)
T PRK11138        295 GRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINR  352 (394)
T ss_pred             CEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEEC
Confidence            6777788899999999999987765432 111 111111  2556777778888877764

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.25  E-value=0.0025  Score=60.24  Aligned_cols=245  Identities=13%  Similarity=0.125  Sum_probs=126.1

Q ss_pred             EEEECC-CCCEEEEEeCCC-eEEEEEcC-CceeEeeccCCCCEE--EEEeCCCCCEEEEeeC-----CCcEEEEECC-CC
Q 008496          279 TLDWNG-EGTLLATGSYDG-QARIWSTN-GDLKCTLSKHKGPIF--SLKWNKKGDYLLTGSC-----DKTAIVWDVK-TE  347 (563)
Q Consensus       279 ~l~~s~-~g~~l~sg~~dg-~i~vw~~~-~~~~~~~~~h~~~V~--~l~~~~~~~~l~s~s~-----D~~v~iwd~~-~~  347 (563)
                      .++.+| .+..++.+-.-| .+.+||.. +.....+....+--+  .-.|+++|++|++.-.     .|.|-|||.. +.
T Consensus         9 ~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~   88 (305)
T PF07433_consen    9 GVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGY   88 (305)
T ss_pred             ceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCc
Confidence            455666 455566665555 34566654 333333322222111  2468999999998654     4789999998 45


Q ss_pred             ceeEEeeecccCeEEEecCCCc-eEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCC--CEEEEEeCCCcEEE
Q 008496          348 EWKQQFEFHSGPTLDVDWRNNV-SFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTG--SLLASCSDDVTAKI  424 (563)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~--~~las~s~dg~i~i  424 (563)
                      ..+..|..+.-...++.+.++. .++.+- .|.                         .-+|+.  ..|=..+.+-.+..
T Consensus        89 ~ri~E~~s~GIGPHel~l~pDG~tLvVAN-GGI-------------------------~Thpd~GR~kLNl~tM~psL~~  142 (305)
T PF07433_consen   89 RRIGEFPSHGIGPHELLLMPDGETLVVAN-GGI-------------------------ETHPDSGRAKLNLDTMQPSLVY  142 (305)
T ss_pred             EEEeEecCCCcChhhEEEcCCCCEEEEEc-CCC-------------------------ccCcccCceecChhhcCCceEE
Confidence            5555665555444555554443 222221 110                         001110  00111112222333


Q ss_pred             EeCCCCceeee--e--cccCCCEEEEEEccCCCCCC-------CCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCC
Q 008496          425 WNMKQDKYVHD--L--REHSKEIYTIRWSPTGSGTN-------NPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREP  493 (563)
Q Consensus       425 wd~~~~~~~~~--~--~~~~~~i~~~~~~p~~~~~~-------~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~  493 (563)
                      -|..++..+..  +  ..|.-.|..+++.++|....       ......+++.-..++.++........    ......-
T Consensus       143 ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~----~~~l~~Y  218 (305)
T PF07433_consen  143 LDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQ----WRRLNGY  218 (305)
T ss_pred             EecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHH----HHhhCCc
Confidence            33444443332  2  22555677777776653100       00111234443333334433332111    1122345


Q ss_pred             EEEEEEcCCCCEEEE-EeCCCcEEEEecCCCeeEEEEecCCCEEEEEEcCCCCEEEEEECCCeE
Q 008496          494 VYSLAFSPTGEYLAS-GSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTV  556 (563)
Q Consensus       494 i~~l~~spdg~~las-gs~dg~v~iw~~~~~~~~~~~~~~~~i~~l~w~~~g~~la~~~~~~~v  556 (563)
                      |-+|+++++|.++++ +-.-+.+.+||..+|+++....- ..++.++-.+++ ++++. ..|.+
T Consensus       219 ~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l-~D~cGva~~~~~-f~~ss-G~G~~  279 (305)
T PF07433_consen  219 IGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPL-PDACGVAPTDDG-FLVSS-GQGQL  279 (305)
T ss_pred             eEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeecccc-CceeeeeecCCc-eEEeC-CCccE
Confidence            889999999988755 44678999999999998876543 236777777777 44444 34443

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.25  E-value=0.0026  Score=60.04  Aligned_cols=205  Identities=12%  Similarity=0.144  Sum_probs=127.8

Q ss_pred             EEEECC-CCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEEC-CCCCEEEEEeCCCe
Q 008496          220 ACAWSP-AGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWN-GEGTLLATGSYDGQ  297 (563)
Q Consensus       220 ~~~~sp-~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s-~~g~~l~sg~~dg~  297 (563)
                      +.+|.+ ++.++++--..+.|..|+..++...           ...         ......+++. ++|.+ +.+...+ 
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~-----------~~~---------~~~~~G~~~~~~~g~l-~v~~~~~-   61 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVE-----------VID---------LPGPNGMAFDRPDGRL-YVADSGG-   61 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEEE-----------EEE---------SSSEEEEEEECTTSEE-EEEETTC-
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeEE-----------EEe---------cCCCceEEEEccCCEE-EEEEcCc-
Confidence            578998 6777777777889999997654310           000         1115566676 56554 4455544 


Q ss_pred             EEEEEcCCceeEeecc------CCCCEEEEEeCCCCCEEEEeeCC--------CcEEEEECCCCceeEEeeecccCeEEE
Q 008496          298 ARIWSTNGDLKCTLSK------HKGPIFSLKWNKKGDYLLTGSCD--------KTAIVWDVKTEEWKQQFEFHSGPTLDV  363 (563)
Q Consensus       298 i~vw~~~~~~~~~~~~------h~~~V~~l~~~~~~~~l~s~s~D--------~~v~iwd~~~~~~~~~~~~~~~~~~~~  363 (563)
                      +.++|........+..      .......+++.|+|+..++....        +.|..++.. ++...... .......+
T Consensus        62 ~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~~~pNGi  139 (246)
T PF08450_consen   62 IAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GLGFPNGI  139 (246)
T ss_dssp             EEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EESSEEEE
T ss_pred             eEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec-Ccccccce
Confidence            4555866443322211      23456889999999976765543        456777766 44333322 23334556


Q ss_pred             ecCCCc--eEEEEeCCCeEEEEEcCCCcc-------eeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceee
Q 008496          364 DWRNNV--SFATSSTDNMIYVCKIGENRP-------IKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVH  434 (563)
Q Consensus       364 ~~~~~~--~~~~~~~d~~i~~~~~~~~~~-------~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~  434 (563)
                      .|..+.  .+++-+..+.|+.+++.....       +..+....+....++++.+|++.++....+.|.+++.. ++.+.
T Consensus       140 ~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~  218 (246)
T PF08450_consen  140 AFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLR  218 (246)
T ss_dssp             EEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEE
T ss_pred             EECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEE
Confidence            665443  456778888999999864321       22223333457889999999999888889999999987 77777


Q ss_pred             eecccCCCEEEEEEc
Q 008496          435 DLREHSKEIYTIRWS  449 (563)
Q Consensus       435 ~~~~~~~~i~~~~~~  449 (563)
                      .+......+++++|.
T Consensus       219 ~i~~p~~~~t~~~fg  233 (246)
T PF08450_consen  219 EIELPVPRPTNCAFG  233 (246)
T ss_dssp             EEE-SSSSEEEEEEE
T ss_pred             EEcCCCCCEEEEEEE
Confidence            776665688999994

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.21  E-value=0.0058  Score=63.81  Aligned_cols=249  Identities=13%  Similarity=0.184  Sum_probs=138.2

Q ss_pred             CEEEEEeCCCeEEEEEcC-CceeEeeccCCC--CEEEEEeCC--CCCEEEEee---------CCCcEEEEECCCCceeEE
Q 008496          287 TLLATGSYDGQARIWSTN-GDLKCTLSKHKG--PIFSLKWNK--KGDYLLTGS---------CDKTAIVWDVKTEEWKQQ  352 (563)
Q Consensus       287 ~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~--~V~~l~~~~--~~~~l~s~s---------~D~~v~iwd~~~~~~~~~  352 (563)
                      ..++.++.+|.|+.+|.. |+.+..+.....  .-..+.-+|  .+..++.++         .++.+...|..+++.+-.
T Consensus       111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~  190 (488)
T cd00216         111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWR  190 (488)
T ss_pred             CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeE
Confidence            577788889999999974 665544432211  000111111  123444443         367889999999987666


Q ss_pred             eeecccCe-----------------------EEEecCCCceEEEEeCCC------------------eEEEEEcCCCcce
Q 008496          353 FEFHSGPT-----------------------LDVDWRNNVSFATSSTDN------------------MIYVCKIGENRPI  391 (563)
Q Consensus       353 ~~~~~~~~-----------------------~~~~~~~~~~~~~~~~d~------------------~i~~~~~~~~~~~  391 (563)
                      +.......                       ..++. ....+..++.++                  .++-.+..+++.+
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~-~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~  269 (488)
T cd00216         191 FYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDP-KTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVK  269 (488)
T ss_pred             eeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeC-CCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEE
Confidence            55421110                       00111 122333343333                  6777788777766


Q ss_pred             eeecC--CCc---ce-eEEEE----CCCCC---EEEEEeCCCcEEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCC
Q 008496          392 KTFAG--HQG---EV-NCVKW----DPTGS---LLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNP  458 (563)
Q Consensus       392 ~~~~~--h~~---~i-~~~~~----~~~~~---~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~  458 (563)
                      -.+..  |..   .. ....+    .-++.   .++.++.+|.+...|.++++.+-......   ..+..+|        
T Consensus       270 W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~---~~~~~~~--------  338 (488)
T cd00216         270 WFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVE---QPMAYDP--------  338 (488)
T ss_pred             EEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeec---cccccCC--------
Confidence            55431  110   00 00011    11333   57788899999999999998775432110   0111112        


Q ss_pred             CCcEEEEE----------------EeCCCeEEEEeCCCCeEEEEecCCC--------CCEEEEEEcCCCCEEEEEeCCCc
Q 008496          459 NQQLILAS----------------ASFDSTVKLWDVELGKLLYSLNGHR--------EPVYSLAFSPTGEYLASGSLDKS  514 (563)
Q Consensus       459 ~~~~~l~s----------------~s~dg~i~iwd~~~~~~~~~~~~h~--------~~i~~l~~spdg~~lasgs~dg~  514 (563)
                       +..++.+                ...+|.|.-.|+.+|+.+++.....        .+...-...-.+..|+.|+.||.
T Consensus       339 -~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~  417 (488)
T cd00216         339 -GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGY  417 (488)
T ss_pred             -ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCe
Confidence             1111111                2246789999999999988765321        11111111124578888999999


Q ss_pred             EEEEecCCCeeEEEEecCCCEEE--EEEcCCCCEEE
Q 008496          515 MHIWSLKEGKIVKTYTGNGGIFE--VCWNKEGDKIA  548 (563)
Q Consensus       515 v~iw~~~~~~~~~~~~~~~~i~~--l~w~~~g~~la  548 (563)
                      |+.+|..+|+++..++..+.+..  +.+..+|+..+
T Consensus       418 l~ald~~tG~~lW~~~~~~~~~a~P~~~~~~g~~yv  453 (488)
T cd00216         418 FRAFDATTGKELWKFRTPSGIQATPMTYEVNGKQYV  453 (488)
T ss_pred             EEEEECCCCceeeEEECCCCceEcCEEEEeCCEEEE
Confidence            99999999999988876555532  44566675333

The alignment model contains an 8-bladed beta-propeller.

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.18  E-value=0.0026  Score=63.54  Aligned_cols=257  Identities=15%  Similarity=0.220  Sum_probs=131.0

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCeEEEEEcCCceeEeeccC------------------CCCEEEEEeCCCCCEEEEeeCC
Q 008496          275 KDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKH------------------KGPIFSLKWNKKGDYLLTGSCD  336 (563)
Q Consensus       275 ~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~~~~~~~h------------------~~~V~~l~~~~~~~~l~s~s~D  336 (563)
                      ..+....|||+|+.++... ++.|.+++..+.....+...                  -+.-.++-|||+|++|+....|
T Consensus        43 ~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d  121 (353)
T PF00930_consen   43 PKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFD  121 (353)
T ss_dssp             TTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE
T ss_pred             cccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEEC
Confidence            4577889999999998876 57899998654433322211                  0112467899999999877655


Q ss_pred             -CcEEEEEC---CCCceeEEeeecccCeEEEecCCCceEEEEeC--CCeEEEEEcCCCccee--ee---cCCCcceeEEE
Q 008496          337 -KTAIVWDV---KTEEWKQQFEFHSGPTLDVDWRNNVSFATSST--DNMIYVCKIGENRPIK--TF---AGHQGEVNCVK  405 (563)
Q Consensus       337 -~~v~iwd~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--d~~i~~~~~~~~~~~~--~~---~~h~~~i~~~~  405 (563)
                       ..|..+.+   .....  .    -..+..+.+..     .+..  .-.++++++.+++...  ..   ..-...+..+.
T Consensus       122 ~~~v~~~~~~~~~~~~~--~----yp~~~~~~YPk-----~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~  190 (353)
T PF00930_consen  122 EREVPEYPLPDYSPPDS--Q----YPEVESIRYPK-----AGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVG  190 (353)
T ss_dssp             -TTS-EEEEEEESSSTE--S----S-EEEEEE--B-----TTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEE
T ss_pred             CcCCceEEeeccCCccc--c----CCcccccccCC-----CCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccce
Confidence             33443332   11100  0    00011111100     0000  1135667776655321  11   22345688999


Q ss_pred             ECCCCC-EEE-EEeCCC---cEEEEeCCCCceeeeeccc-CCCE---EEEEEc-cCCCCCCCCCCcEEEEEEeCCCeEEE
Q 008496          406 WDPTGS-LLA-SCSDDV---TAKIWNMKQDKYVHDLREH-SKEI---YTIRWS-PTGSGTNNPNQQLILASASFDSTVKL  475 (563)
Q Consensus       406 ~~~~~~-~la-s~s~dg---~i~iwd~~~~~~~~~~~~~-~~~i---~~~~~~-p~~~~~~~~~~~~~l~s~s~dg~i~i  475 (563)
                      |.++++ +++ ....+.   .+.++|..++.....+... ...|   ....|. +++        ..+|.....||.-+|
T Consensus       191 W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~--------~~~l~~s~~~G~~hl  262 (353)
T PF00930_consen  191 WSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDG--------NEFLWISERDGYRHL  262 (353)
T ss_dssp             EEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTS--------SEEEEEEETTSSEEE
T ss_pred             ecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCC--------CEEEEEEEcCCCcEE
Confidence            999998 333 333333   3456677665443222211 1111   123332 333        234444557876555


Q ss_pred             E--eCCCCeEEEEecCCCCCEEE-EEEcCCCCEE-EEEeCC----CcEEEEecC-CCeeEEEEecCCCE-EEEEEcCCCC
Q 008496          476 W--DVELGKLLYSLNGHREPVYS-LAFSPTGEYL-ASGSLD----KSMHIWSLK-EGKIVKTYTGNGGI-FEVCWNKEGD  545 (563)
Q Consensus       476 w--d~~~~~~~~~~~~h~~~i~~-l~~spdg~~l-asgs~d----g~v~iw~~~-~~~~~~~~~~~~~i-~~l~w~~~g~  545 (563)
                      +  +...+. ...++...-.|.. +.|+++++.| .+|..+    ..|..-++. .+.+ +.++...+. +.++|||+|+
T Consensus       263 y~~~~~~~~-~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~-~~LT~~~~~~~~~~~Spdg~  340 (353)
T PF00930_consen  263 YLYDLDGGK-PRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEP-KCLTCEDGDHYSASFSPDGK  340 (353)
T ss_dssp             EEEETTSSE-EEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEE-EESSTTSSTTEEEEE-TTSS
T ss_pred             EEEcccccc-eeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCe-EeccCCCCCceEEEECCCCC
Confidence            4  555444 4456655566755 6788987655 455543    245555556 4443 444433322 6999999999


Q ss_pred             EEEEEECC
Q 008496          546 KIAACFAN  553 (563)
Q Consensus       546 ~la~~~~~  553 (563)
                      +++..+++
T Consensus       341 y~v~~~s~  348 (353)
T PF00930_consen  341 YYVDTYSG  348 (353)
T ss_dssp             EEEEEEES
T ss_pred             EEEEEEcC
Confidence            88866554

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.16  E-value=0.0012  Score=68.79  Aligned_cols=271  Identities=11%  Similarity=0.085  Sum_probs=145.6

Q ss_pred             CEEEEEeCCCeEEEEEcC-CceeEeeccCCC------CEE--EEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecc
Q 008496          287 TLLATGSYDGQARIWSTN-GDLKCTLSKHKG------PIF--SLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHS  357 (563)
Q Consensus       287 ~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~------~V~--~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~  357 (563)
                      ..+..++.++.+...|.. |+.+..+.....      .+.  .+... ++..++.++.++.|..+|.++++.+-.+....
T Consensus        62 g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~  140 (488)
T cd00216          62 GDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNND  140 (488)
T ss_pred             CEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCCC
Confidence            455666777888877753 444433322111      111  01111 22678888899999999999998776554332


Q ss_pred             cC--eEEE----ecCCCceEEEE--------eCCCeEEEEEcCCCcceeeecCCCc--------------------ce-e
Q 008496          358 GP--TLDV----DWRNNVSFATS--------STDNMIYVCKIGENRPIKTFAGHQG--------------------EV-N  402 (563)
Q Consensus       358 ~~--~~~~----~~~~~~~~~~~--------~~d~~i~~~~~~~~~~~~~~~~h~~--------------------~i-~  402 (563)
                      ..  ...+    ...+...++.+        ..++.++.+|..+++.+-.+.....                    .+ .
T Consensus       141 ~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~  220 (488)
T cd00216         141 QVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWA  220 (488)
T ss_pred             CcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccC
Confidence            10  0000    01122222222        2356788888877766544432110                    11 1


Q ss_pred             EEEECCCCCEEEEEeCCC------------------cEEEEeCCCCceeeeecccCCCEE--EEEEccCCCC--CCCCCC
Q 008496          403 CVKWDPTGSLLASCSDDV------------------TAKIWNMKQDKYVHDLREHSKEIY--TIRWSPTGSG--TNNPNQ  460 (563)
Q Consensus       403 ~~~~~~~~~~las~s~dg------------------~i~iwd~~~~~~~~~~~~~~~~i~--~~~~~p~~~~--~~~~~~  460 (563)
                      ..++++.+.+++.++.++                  .+.-.|.++++.+-.++.-.....  .....|.-..  ......
T Consensus       221 ~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~  300 (488)
T cd00216         221 SPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKP  300 (488)
T ss_pred             CeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCe
Confidence            344555566777776555                  688888888887755432111111  0000010000  000011


Q ss_pred             cEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEE-----------------EeCCCcEEEEecCCC
Q 008496          461 QLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLAS-----------------GSLDKSMHIWSLKEG  523 (563)
Q Consensus       461 ~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~las-----------------gs~dg~v~iw~~~~~  523 (563)
                      ..+++.++.+|.+...|.++|+.++.....   ...++.+| +..++.                 ...+|.|.-.|+.+|
T Consensus       301 ~~~V~~g~~~G~l~ald~~tG~~~W~~~~~---~~~~~~~~-~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG  376 (488)
T cd00216         301 VPAIVHAPKNGFFYVLDRTTGKLISARPEV---EQPMAYDP-GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTG  376 (488)
T ss_pred             eEEEEEECCCceEEEEECCCCcEeeEeEee---ccccccCC-ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCC
Confidence            135777889999999999999998876421   11234455 222221                 124678889999999


Q ss_pred             eeEEEEecC---------CCEEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496          524 KIVKTYTGN---------GGIFEVCWNKEGDKIAACFANHTVCVLDFR  562 (563)
Q Consensus       524 ~~~~~~~~~---------~~i~~l~w~~~g~~la~~~~~~~v~v~~~~  562 (563)
                      +.+......         .....-.--..|..|.++..+|.+..+|.+
T Consensus       377 ~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~  424 (488)
T cd00216         377 KVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDAT  424 (488)
T ss_pred             cEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEECC
Confidence            988776543         111100111245677888788888877753

The alignment model contains an 8-bladed beta-propeller.

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.14  E-value=0.00043  Score=69.96  Aligned_cols=206  Identities=19%  Similarity=0.238  Sum_probs=115.7

Q ss_pred             eEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEEEee--CC--CcEEEEECCCCceeEEeeecccCeEEEecCCCceEE
Q 008496          297 QARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGS--CD--KTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFA  372 (563)
Q Consensus       297 ~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s--~D--~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  372 (563)
                      .+.+=|.+|.....+..-...+..-+|+|++..++-.+  ..  ..+.++|+.++....                     
T Consensus       174 ~l~~~D~dg~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~---------------------  232 (425)
T COG0823         174 ELALGDYDGYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPV---------------------  232 (425)
T ss_pred             eEEEEccCCcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccce---------------------
Confidence            33333444444445555556677778888887654331  11  235555555443211                     


Q ss_pred             EEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEE-eCCCcEEEE--eCCCCceeeeecccCCCEEEEEEc
Q 008496          373 TSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASC-SDDVTAKIW--NMKQDKYVHDLREHSKEIYTIRWS  449 (563)
Q Consensus       373 ~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~-s~dg~i~iw--d~~~~~~~~~~~~~~~~i~~~~~~  449 (563)
                                        +..+.++.   ...+|+|||+.|+-+ ..||...||  |+.++... .+..-.+.-..-.|+
T Consensus       233 ------------------i~~~~g~~---~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~-~Lt~~~gi~~~Ps~s  290 (425)
T COG0823         233 ------------------ILNFNGNN---GAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLP-RLTNGFGINTSPSWS  290 (425)
T ss_pred             ------------------eeccCCcc---CCccCCCCCCEEEEEECCCCCccEEEEcCCCCcce-ecccCCccccCccCC
Confidence                              12233332   246799999887654 457765554  66555532 233333333345666


Q ss_pred             cCCCCCCCCCCcEEEEEEeCCCeEEEE--eCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeC-CCc--EEEEecCCCe
Q 008496          450 PTGSGTNNPNQQLILASASFDSTVKLW--DVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSL-DKS--MHIWSLKEGK  524 (563)
Q Consensus       450 p~~~~~~~~~~~~~l~s~s~dg~i~iw--d~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~-dg~--v~iw~~~~~~  524 (563)
                      |+|+        .++.+.+..|.-.||  |.+.+.. ..++.....-..-.|||||++|+..+. +|.  |.+.++.++.
T Consensus       291 pdG~--------~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~  361 (425)
T COG0823         291 PDGS--------KIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGG  361 (425)
T ss_pred             CCCC--------EEEEEeCCCCCcceEEECCCCCce-eEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCC
Confidence            7665        466666677765554  5554433 333322222236789999999987764 344  6777776665


Q ss_pred             eEEEEecCCCEEEEEEcCCCCEEEEEECCC
Q 008496          525 IVKTYTGNGGIFEVCWNKEGDKIAACFANH  554 (563)
Q Consensus       525 ~~~~~~~~~~i~~l~w~~~g~~la~~~~~~  554 (563)
                      -++.+.........+|.++|+.+......+
T Consensus       362 ~~~~lt~~~~~e~ps~~~ng~~i~~~s~~~  391 (425)
T COG0823         362 KIRILTSTYLNESPSWAPNGRMIMFSSGQG  391 (425)
T ss_pred             cEEEccccccCCCCCcCCCCceEEEeccCC
Confidence            455555544455678999998777664443

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.03  E-value=9.5e-05  Score=74.21  Aligned_cols=114  Identities=18%  Similarity=0.302  Sum_probs=83.6

Q ss_pred             ccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEE
Q 008496          438 EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHI  517 (563)
Q Consensus       438 ~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~i  517 (563)
                      .....+.+.+++|+..         .|+.|..||+|.+||...+.....  ...-..+.++|+|+|.++++|+..|.+.+
T Consensus       257 pL~s~v~~ca~sp~E~---------kLvlGC~DgSiiLyD~~~~~t~~~--ka~~~P~~iaWHp~gai~~V~s~qGelQ~  325 (545)
T PF11768_consen  257 PLPSQVICCARSPSED---------KLVLGCEDGSIILYDTTRGVTLLA--KAEFIPTLIAWHPDGAIFVVGSEQGELQC  325 (545)
T ss_pred             ecCCcceEEecCcccc---------eEEEEecCCeEEEEEcCCCeeeee--eecccceEEEEcCCCcEEEEEcCCceEEE
Confidence            3566788888888754         688899999999999876644332  23455788999999999999999999999


Q ss_pred             EecCCCeeEEE-----------------EecCCCEEEEEEcCCC-------------CEEEEEECCCeEEEEEee
Q 008496          518 WSLKEGKIVKT-----------------YTGNGGIFEVCWNKEG-------------DKIAACFANHTVCVLDFR  562 (563)
Q Consensus       518 w~~~~~~~~~~-----------------~~~~~~i~~l~w~~~g-------------~~la~~~~~~~v~v~~~~  562 (563)
                      ||+.-.-+...                 +.....+..+.|.+..             +.|+..+..|-+.|+-|+
T Consensus       326 FD~ALspi~~qLlsEd~~P~~~L~Ls~yf~~~~~L~~iqW~~~~~~~~~~~~~~~~~~~L~l~f~~GPl~vl~~~  400 (545)
T PF11768_consen  326 FDMALSPIKMQLLSEDATPKSTLQLSKYFRVSSSLVHIQWAPAPQLSSQGEFYADTYDLLLLVFERGPLAVLRFK  400 (545)
T ss_pred             EEeecCccceeeccccCCCccEEeeehhccCcchhheeEeccCCCccccCCCcCCccceEEEEEcCCCeEEEEEe
Confidence            99864432111                 1122345678998432             477888899988887764

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.02  E-value=0.001  Score=69.55  Aligned_cols=187  Identities=12%  Similarity=0.196  Sum_probs=116.8

Q ss_pred             ecCCCCceEEEEECCCC-CEEEEeeCCC-----cEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECC
Q 008496          211 LEGHTSEVCACAWSPAG-SLLASGSGDS-----TARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG  284 (563)
Q Consensus       211 l~~h~~~V~~~~~sp~~-~~latgs~D~-----~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~  284 (563)
                      +..+...+-..-|.-++ .+|++-+.|.     .++||++.....+.+    |......+......+....++++++.+.
T Consensus        60 fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s----P~c~~~~ri~~~~np~~~~p~s~l~Vs~  135 (933)
T KOG2114|consen   60 FQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS----PQCLYEHRIFTIKNPTNPSPASSLAVSE  135 (933)
T ss_pred             heecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCC----cceeeeeeeeccCCCCCCCcceEEEEEc
Confidence            34455553333455554 6888877654     599999875432111    3333222322222223467899999999


Q ss_pred             CCCEEEEEeCCCeEEEEEcC-----CceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCc-eeEEeeeccc
Q 008496          285 EGTLLATGSYDGQARIWSTN-----GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEE-WKQQFEFHSG  358 (563)
Q Consensus       285 ~g~~l~sg~~dg~i~vw~~~-----~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~-~~~~~~~~~~  358 (563)
                      +-+.+|+|-.||.|..+.-+     |........-+.||+++.+..++..++-+..-..|.+|.+.... .......++.
T Consensus       136 ~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~  215 (933)
T KOG2114|consen  136 DLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGI  215 (933)
T ss_pred             cccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCc
Confidence            99999999999999998532     12122233456799999999998875555555789999987444 2333555555


Q ss_pred             CeEEEecCCCce-EEEEeCCCeEEEEEcCCCcceeeec-CCCccee
Q 008496          359 PTLDVDWRNNVS-FATSSTDNMIYVCKIGENRPIKTFA-GHQGEVN  402 (563)
Q Consensus       359 ~~~~~~~~~~~~-~~~~~~d~~i~~~~~~~~~~~~~~~-~h~~~i~  402 (563)
                      +..+..+.+... |+++ .+..+++|+.+..++...|. ||...+.
T Consensus       216 ~lnCss~~~~t~qfIca-~~e~l~fY~sd~~~~cfaf~~g~kk~~~  260 (933)
T KOG2114|consen  216 SLNCSSFSDGTYQFICA-GSEFLYFYDSDGRGPCFAFEVGEKKEML  260 (933)
T ss_pred             cceeeecCCCCccEEEe-cCceEEEEcCCCcceeeeecCCCeEEEE
Confidence            666655554443 5544 45678888888777766666 5554443

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.96  E-value=0.0045  Score=62.89  Aligned_cols=215  Identities=15%  Similarity=0.229  Sum_probs=116.7

Q ss_pred             CCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceee
Q 008496          314 HKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKT  393 (563)
Q Consensus       314 h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~  393 (563)
                      ..-....+.++|+|++++. ..||...|+......-..     .+...++.|.....||+-...+.|.++.--....++.
T Consensus        31 ~~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k~-----~G~g~~~vw~~~n~yAv~~~~~~I~I~kn~~~~~~k~  104 (443)
T PF04053_consen   31 CEIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNKA-----FGSGLSFVWSSRNRYAVLESSSTIKIYKNFKNEVVKS  104 (443)
T ss_dssp             -SS--SEEEE-TTSSEEEE-EETTEEEEEETTTTEEEE-----EEE-SEEEE-TSSEEEEE-TTS-EEEEETTEE-TT--
T ss_pred             CCcCCeeEEECCCCCEEEE-EcCCEEEEEEccCCcccc-----cCceeEEEEecCccEEEEECCCeEEEEEcCccccceE
Confidence            3345678999999999888 557888888743322211     2345677888888899888888888864333333222


Q ss_pred             ecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeE
Q 008496          394 FAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTV  473 (563)
Q Consensus       394 ~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i  473 (563)
                      +.-. ..+..+-.   |.+|+..+.+ .|.+||+.+++.+..+...  .|..+.|++++.         +++-.+ +.++
T Consensus       105 i~~~-~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~---------~val~t-~~~i  167 (443)
T PF04053_consen  105 IKLP-FSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWSDDGE---------LVALVT-KDSI  167 (443)
T ss_dssp             ---S-S-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-TTSS---------EEEEE--S-SE
T ss_pred             EcCC-cccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEECCCC---------EEEEEe-CCeE
Confidence            2211 12333322   8888777666 8999999999999887643  389999999875         444444 4578


Q ss_pred             EEEeCCCC--------------eEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCe--eEEEEecCCCEEE
Q 008496          474 KLWDVELG--------------KLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGK--IVKTYTGNGGIFE  537 (563)
Q Consensus       474 ~iwd~~~~--------------~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~--~~~~~~~~~~i~~  537 (563)
                      .|++....              ..+.++   ...|.+.+|..| -++.| +.. +|+-+  -.|.  .++++  ...++=
T Consensus       168 ~il~~~~~~~~~~~~~g~e~~f~~~~E~---~~~IkSg~W~~d-~fiYt-T~~-~lkYl--~~Ge~~~i~~l--d~~~yl  237 (443)
T PF04053_consen  168 YILKYNLEAVAAIPEEGVEDAFELIHEI---SERIKSGCWVED-CFIYT-TSN-HLKYL--VNGETGIIAHL--DKPLYL  237 (443)
T ss_dssp             EEEEE-HHHHHHBTTTB-GGGEEEEEEE----S--SEEEEETT-EEEEE--TT-EEEEE--ETTEEEEEEE---SS--EE
T ss_pred             EEEEecchhcccccccCchhceEEEEEe---cceeEEEEEEcC-EEEEE-cCC-eEEEE--EcCCcceEEEc--CCceEE
Confidence            88765433              233332   356888888766 33333 323 67663  3343  33333  345666


Q ss_pred             EEEcCCCCEEEEEECCCeEEEEEe
Q 008496          538 VCWNKEGDKIAACFANHTVCVLDF  561 (563)
Q Consensus       538 l~w~~~g~~la~~~~~~~v~v~~~  561 (563)
                      +...+..++|.....++.+..+.+
T Consensus       238 lgy~~~~~~ly~~Dr~~~v~~~~l  261 (443)
T PF04053_consen  238 LGYLPKENRLYLIDRDGNVISYEL  261 (443)
T ss_dssp             EEEETTTTEEEEE-TT--EEEEE-
T ss_pred             EEEEccCCEEEEEECCCCEEEEEE
Confidence            777777788888878877766654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=97.94  E-value=0.04  Score=57.94  Aligned_cols=75  Identities=17%  Similarity=0.398  Sum_probs=51.8

Q ss_pred             CeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEecCCCEEE--EEEcCCCCE
Q 008496          471 STVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFE--VCWNKEGDK  546 (563)
Q Consensus       471 g~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~~~~i~~--l~w~~~g~~  546 (563)
                      |.|.-+|+.+|+.++..........+. ..-.|..++.++.||.++.+|.++|+.+..+...+.+..  +.+..+|+.
T Consensus       441 g~l~AiD~~tGk~~W~~~~~~p~~~~~-l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g~~~~a~P~ty~~~G~q  517 (527)
T TIGR03075       441 GSLIAWDPITGKIVWEHKEDFPLWGGV-LATAGDLVFYGTLEGYFKAFDAKTGEELWKFKTGSGIVGPPVTYEQDGKQ  517 (527)
T ss_pred             eeEEEEeCCCCceeeEecCCCCCCCcc-eEECCcEEEEECCCCeEEEEECCCCCEeEEEeCCCCceecCEEEEeCCEE
Confidence            578889999999988765322111111 122455677788899999999999999988876655443  555567763

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.94  E-value=0.0012  Score=68.18  Aligned_cols=212  Identities=15%  Similarity=0.125  Sum_probs=117.6

Q ss_pred             eCCCCCEEEEe-eCCCcEEEEECCCCceeEEeeecccC-eEEEecCCCceEEEEe---CCCeEEEEEcCCCcceeeecCC
Q 008496          323 WNKKGDYLLTG-SCDKTAIVWDVKTEEWKQQFEFHSGP-TLDVDWRNNVSFATSS---TDNMIYVCKIGENRPIKTFAGH  397 (563)
Q Consensus       323 ~~~~~~~l~s~-s~D~~v~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~---~d~~i~~~~~~~~~~~~~~~~h  397 (563)
                      +.|+|+.+... -..+.+.+.|..+.+...++.....+ ..++.......|+++.   ...++...+.....-+..|.- 
T Consensus       200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni-  278 (635)
T PRK02888        200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNI-  278 (635)
T ss_pred             cCCCCCEeecccceeEEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEch-
Confidence            44566554322 22355667777776665555443322 2233333333344431   122232222221111111110 


Q ss_pred             CcceeEEEECCCCCEEEEEeCCCcEEEEeCCC----C-ceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCe
Q 008496          398 QGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQ----D-KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDST  472 (563)
Q Consensus       398 ~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~----~-~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~  472 (563)
                       ..+  -++.++|++...  .++.|.+.|..+    + ..+..+ .-......+.++|+|.        .+++++..+.+
T Consensus       279 -~~i--ea~vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yI-PVGKsPHGV~vSPDGk--------ylyVanklS~t  344 (635)
T PRK02888        279 -ARI--EEAVKAGKFKTI--GGSKVPVVDGRKAANAGSALTRYV-PVPKNPHGVNTSPDGK--------YFIANGKLSPT  344 (635)
T ss_pred             -HHH--HHhhhCCCEEEE--CCCEEEEEECCccccCCcceEEEE-ECCCCccceEECCCCC--------EEEEeCCCCCc
Confidence             000  123457776655  367899999887    3 333333 2334556778888875        57788888999


Q ss_pred             EEEEeCCCCeE------------EEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCC----------CeeEEEEe
Q 008496          473 VKLWDVELGKL------------LYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKE----------GKIVKTYT  530 (563)
Q Consensus       473 i~iwd~~~~~~------------~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~----------~~~~~~~~  530 (563)
                      |.|.|+.+.+.            +.+..--.+| ...+|.++|..+.|--.|..|..|++.+          ..++....
T Consensus       345 VSVIDv~k~k~~~~~~~~~~~~vvaevevGlGP-LHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~d  423 (635)
T PRK02888        345 VTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGP-LHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLD  423 (635)
T ss_pred             EEEEEChhhhhhhhccCCccceEEEeeccCCCc-ceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceeccc
Confidence            99999987542            2333222333 5678999999888999999999999876          23444433


Q ss_pred             cCCCEEEEE------EcCCCCEEEEE
Q 008496          531 GNGGIFEVC------WNKEGDKIAAC  550 (563)
Q Consensus       531 ~~~~i~~l~------w~~~g~~la~~  550 (563)
                      -+-.+-.+.      -.|||++|++.
T Consensus       424 V~y~pgh~~~~~g~t~~~dgk~l~~~  449 (635)
T PRK02888        424 VHYQPGHNHASMGETKEADGKWLVSL  449 (635)
T ss_pred             CCCccceeeecCCCcCCCCCCEEEEc
Confidence            322222222      37889988776

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.94  E-value=0.0084  Score=60.87  Aligned_cols=198  Identities=12%  Similarity=0.181  Sum_probs=95.0

Q ss_pred             EEEEECCCCceeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCc------ceeeecCCCcceeEEEECCCCCE
Q 008496          339 AIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENR------PIKTFAGHQGEVNCVKWDPTGSL  412 (563)
Q Consensus       339 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~------~~~~~~~h~~~i~~~~~~~~~~~  412 (563)
                      |.||+. .|..+..+....+.+..+.|..+..+++-..||.+++++.....      .+....-....+....+..+|-.
T Consensus        63 I~iys~-sG~ll~~i~w~~~~iv~~~wt~~e~LvvV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~~~Giv  141 (410)
T PF04841_consen   63 IQIYSS-SGKLLSSIPWDSGRIVGMGWTDDEELVVVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFYKNGIV  141 (410)
T ss_pred             EEEECC-CCCEeEEEEECCCCEEEEEECCCCeEEEEEcCCEEEEEeCCCceeechhhhccccCcccccccccccCCCCEE
Confidence            555553 23334444444467889999999999999999999999985433      01111111112222233334533


Q ss_pred             EEEEeCCCcEEEEeCCCCc-eeeeecccCCCEEEEEEccCCCCC--CCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecC
Q 008496          413 LASCSDDVTAKIWNMKQDK-YVHDLREHSKEIYTIRWSPTGSGT--NNPNQQLILASASFDSTVKLWDVELGKLLYSLNG  489 (563)
Q Consensus       413 las~s~dg~i~iwd~~~~~-~~~~~~~~~~~i~~~~~~p~~~~~--~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~  489 (563)
                      +.  ..++.+.+-.-.... ....+..-........+.+.....  ...+.. ..+....++.+.+-+-...+.   +. 
T Consensus       142 vL--t~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~-~~i~~~~g~~i~~i~~~~~~~---i~-  214 (410)
T PF04841_consen  142 VL--TGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRV-VEILLANGETIYIIDENSFKQ---ID-  214 (410)
T ss_pred             EE--CCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcc-eEEEEecCCEEEEEEcccccc---cc-
Confidence            33  334444433222111 111110000000101111110000  000000 111222233333222111100   11 


Q ss_pred             CCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEecC--CCEEEEEEcCCC
Q 008496          490 HREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGN--GGIFEVCWNKEG  544 (563)
Q Consensus       490 h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~~--~~i~~l~w~~~g  544 (563)
                      ..+++..++.||+|++||.-..+|.+.|.+..-.+.+..+...  .....+.|--+.
T Consensus       215 ~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~d  271 (410)
T PF04841_consen  215 SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGND  271 (410)
T ss_pred             CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCC
Confidence            2368999999999999999999999999887655555555433  345566666553

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.93  E-value=0.00032  Score=70.84  Aligned_cols=144  Identities=22%  Similarity=0.259  Sum_probs=89.6

Q ss_pred             cceeEEEECCCCCEEEEEeC---C-CcEEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEE
Q 008496          399 GEVNCVKWDPTGSLLASCSD---D-VTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVK  474 (563)
Q Consensus       399 ~~i~~~~~~~~~~~las~s~---d-g~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~  474 (563)
                      ..+..-+|+|+++.++-.+.   . ..+.++++++++....+. ..+.-...+|+|+|+        .++.+...||...
T Consensus       193 ~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~--------~l~f~~~rdg~~~  263 (425)
T COG0823         193 SLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGS--------KLAFSSSRDGSPD  263 (425)
T ss_pred             cceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCC--------EEEEEECCCCCcc
Confidence            34666789999987654422   2 358888988776543322 222334457788775        4777778888755


Q ss_pred             EE--eCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeC-CC--cEEEEecCCCeeEEEEecCCCEEEEEEcCCCCEEEE
Q 008496          475 LW--DVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSL-DK--SMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAA  549 (563)
Q Consensus       475 iw--d~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~-dg--~v~iw~~~~~~~~~~~~~~~~i~~l~w~~~g~~la~  549 (563)
                      ||  |+..+. +..+..-.+.-..-.|||||++|+-.+. .|  .|.+.+...+..-......+.-....|+|||++|+.
T Consensus       264 iy~~dl~~~~-~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG~~i~~  342 (425)
T COG0823         264 IYLMDLDGKN-LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGNSNPVWSPDGDKIVF  342 (425)
T ss_pred             EEEEcCCCCc-ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCCcCccCCCCCCEEEE
Confidence            54  666555 3335433333345689999999986654 34  466667665554222222222226789999999998


Q ss_pred             EEC
Q 008496          550 CFA  552 (563)
Q Consensus       550 ~~~  552 (563)
                      ...
T Consensus       343 ~~~  345 (425)
T COG0823         343 ESS  345 (425)
T ss_pred             Eec
Confidence            874

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.92  E-value=0.023  Score=57.67  Aligned_cols=190  Identities=18%  Similarity=0.255  Sum_probs=104.8

Q ss_pred             eEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeec----ccCeEEE----ecCCC
Q 008496          297 QARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFH----SGPTLDV----DWRNN  368 (563)
Q Consensus       297 ~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~----~~~~~~~----~~~~~  368 (563)
                      .|+||+..|.+...+.--.+.|.++.|+.+ ..|+....||+++++|+....   ++...    ...+.+.    .|..+
T Consensus        62 ~I~iys~sG~ll~~i~w~~~~iv~~~wt~~-e~LvvV~~dG~v~vy~~~G~~---~fsl~~~i~~~~v~e~~i~~~~~~~  137 (410)
T PF04841_consen   62 SIQIYSSSGKLLSSIPWDSGRIVGMGWTDD-EELVVVQSDGTVRVYDLFGEF---QFSLGEEIEEEKVLECRIFAIWFYK  137 (410)
T ss_pred             EEEEECCCCCEeEEEEECCCCEEEEEECCC-CeEEEEEcCCEEEEEeCCCce---eechhhhccccCcccccccccccCC
Confidence            599999999888776544589999999885 566677899999999986433   22211    1112221    12221


Q ss_pred             ceEEEEeCCCeEEEEEc-CCCcceeee---cCCC-----c-cee-EEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeec
Q 008496          369 VSFATSSTDNMIYVCKI-GENRPIKTF---AGHQ-----G-EVN-CVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLR  437 (563)
Q Consensus       369 ~~~~~~~~d~~i~~~~~-~~~~~~~~~---~~h~-----~-~i~-~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~  437 (563)
                      .-++.-..++.+++..- ......+.+   .+..     . ... ...++.+....+....++.+.+-+-.....   + 
T Consensus       138 ~GivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i-  213 (410)
T PF04841_consen  138 NGIVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---I-  213 (410)
T ss_pred             CCEEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---c-
Confidence            22333334455544332 211111111   1100     0 000 022344444445555555555333221111   1 


Q ss_pred             ccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCC-CCCEEEEEEcCCC
Q 008496          438 EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGH-REPVYSLAFSPTG  503 (563)
Q Consensus       438 ~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h-~~~i~~l~~spdg  503 (563)
                      ...+++..++.||++.         ++|.-..+|.+.+.+..-.+.+..+... ..+...+.|.-+.
T Consensus       214 ~~~~~i~~iavSpng~---------~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~d  271 (410)
T PF04841_consen  214 DSDGPIIKIAVSPNGK---------FIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGND  271 (410)
T ss_pred             cCCCCeEEEEECCCCC---------EEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCC
Confidence            1246799999999986         6777778899999987766666665433 2344666665443

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=97.92  E-value=4.5e-06  Score=83.53  Aligned_cols=194  Identities=21%  Similarity=0.337  Sum_probs=123.0

Q ss_pred             CCeEEEEECCCC--CEEEEEeCCCeEEEEEcCC---ceeEeeccCCCCEEEEEeCCCCCEEEEeeC-----CCcEEEEEC
Q 008496          275 KDVTTLDWNGEG--TLLATGSYDGQARIWSTNG---DLKCTLSKHKGPIFSLKWNKKGDYLLTGSC-----DKTAIVWDV  344 (563)
Q Consensus       275 ~~V~~l~~s~~g--~~l~sg~~dg~i~vw~~~~---~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~-----D~~v~iwd~  344 (563)
                      ..+.|++|+-+.  .+++.|..+|.|-+-....   .-.....+|..+.++++|++-....++++.     |..+.|||+
T Consensus        57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi  136 (783)
T KOG1008|consen   57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI  136 (783)
T ss_pred             CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence            457888877644  5788899999998876532   223456788899999999986544444444     457999999


Q ss_pred             CCC--ceeEEeeecc---cCeEEEecCCCceEE-EEeCCCeEEEEEcCCCcc-eeeecCCCcceeEEEECC-CCCEEEEE
Q 008496          345 KTE--EWKQQFEFHS---GPTLDVDWRNNVSFA-TSSTDNMIYVCKIGENRP-IKTFAGHQGEVNCVKWDP-TGSLLASC  416 (563)
Q Consensus       345 ~~~--~~~~~~~~~~---~~~~~~~~~~~~~~~-~~~~d~~i~~~~~~~~~~-~~~~~~h~~~i~~~~~~~-~~~~las~  416 (563)
                      .++  .......+..   .....++|..+..++ ++.....+.+++++.... ...+  .+..+..+..+| .+.++++-
T Consensus       137 ~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv--nTk~vqG~tVdp~~~nY~cs~  214 (783)
T KOG1008|consen  137 NSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV--NTKYVQGITVDPFSPNYFCSN  214 (783)
T ss_pred             ccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh--hhhhcccceecCCCCCceecc
Confidence            876  2333222222   233467887665554 445556788888764321 1111  122455677788 67787665


Q ss_pred             eCCCcEEEEeC-C-CCceeeeeccc----CCCEEEEEEccCCCCCCCCCCcEEEEEEeCC-CeEEEEeCC
Q 008496          417 SDDVTAKIWNM-K-QDKYVHDLREH----SKEIYTIRWSPTGSGTNNPNQQLILASASFD-STVKLWDVE  479 (563)
Q Consensus       417 s~dg~i~iwd~-~-~~~~~~~~~~~----~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~d-g~i~iwd~~  479 (563)
                      + ||.|-+||. . -..++..+...    ...+..++|+|...+        ++++.+.| ++|+++|+.
T Consensus       215 ~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtg--------lla~l~RdS~tIrlydi~  275 (783)
T KOG1008|consen  215 S-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTG--------LLAVLSRDSITIRLYDIC  275 (783)
T ss_pred             c-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcc--------hhhhhccCcceEEEeccc
Confidence            5 999999993 2 22233222211    234899999997643        56666665 689999875

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=97.89  E-value=0.03  Score=56.10  Aligned_cols=88  Identities=13%  Similarity=0.203  Sum_probs=57.9

Q ss_pred             cceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEEEEEccC--CCC---------CC-CCCCcEEEEE
Q 008496          399 GEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPT--GSG---------TN-NPNQQLILAS  466 (563)
Q Consensus       399 ~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~--~~~---------~~-~~~~~~~l~s  466 (563)
                      ..+.+++.+|++++.|+...=|.|.++|+.++..++-+++....  .+.|...  ...         .. .....++++-
T Consensus       308 R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdA--qc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIy  385 (415)
T PF14655_consen  308 REGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDA--QCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIY  385 (415)
T ss_pred             ceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccc--eEEEEEeecccccccccccccCCCCcceEEEEEE
Confidence            45778999999999888877899999999988777666654321  1122111  000         00 0111234555


Q ss_pred             EeCCCeEEEEeCCCCeEEEEec
Q 008496          467 ASFDSTVKLWDVELGKLLYSLN  488 (563)
Q Consensus       467 ~s~dg~i~iwd~~~~~~~~~~~  488 (563)
                      +-.-|.|.||.++.|..+..+.
T Consensus       386 aprRg~lEvW~~~~g~Rv~a~~  407 (415)
T PF14655_consen  386 APRRGILEVWSMRQGPRVAAFN  407 (415)
T ss_pred             eccCCeEEEEecCCCCEEEEEE
Confidence            6778999999999888776654

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.87  E-value=0.0055  Score=61.20  Aligned_cols=273  Identities=17%  Similarity=0.237  Sum_probs=130.6

Q ss_pred             CCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeec-ccccC-CCCeEEEEECCCCCEEEEE
Q 008496          215 TSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKG-RTNEK-SKDVTTLDWNGEGTLLATG  292 (563)
Q Consensus       215 ~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~V~~l~~s~~g~~l~sg  292 (563)
                      ...+....|||+|+.+|... ++.+.++++.++....-...+.....  ..... ...+. -..-..+-|||||++|+..
T Consensus        42 ~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~--nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~  118 (353)
T PF00930_consen   42 PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIY--NGVPDWVYEEEVFDRRSAVWWSPDSKYLAFL  118 (353)
T ss_dssp             ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEE--ESB--HHHHHHTSSSSBSEEE-TTSSEEEEE
T ss_pred             ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEE--cCccceeccccccccccceEECCCCCEEEEE
Confidence            46678899999999998875 57899988765432111111110000  00000 00000 1223568899999999987


Q ss_pred             eCC-CeEEEEEcCCceeEeeccCC---CCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEE-ee----ecccCeEEE
Q 008496          293 SYD-GQARIWSTNGDLKCTLSKHK---GPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQ-FE----FHSGPTLDV  363 (563)
Q Consensus       293 ~~d-g~i~vw~~~~~~~~~~~~h~---~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~-~~----~~~~~~~~~  363 (563)
                      ..| ..|+.+...     ......   -.+..+++-.-|.-...    -.+.|+|+.+++.... ..    ....-+..+
T Consensus       119 ~~d~~~v~~~~~~-----~~~~~~~~yp~~~~~~YPk~G~~np~----v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v  189 (353)
T PF00930_consen  119 RFDEREVPEYPLP-----DYSPPDSQYPEVESIRYPKAGDPNPR----VSLFVVDLASGKTTELDPPNSLNPQDYYLTRV  189 (353)
T ss_dssp             EEE-TTS-EEEEE-----EESSSTESS-EEEEEE--BTTS---E----EEEEEEESSSTCCCEE---HHHHTSSEEEEEE
T ss_pred             EECCcCCceEEee-----ccCCccccCCcccccccCCCCCcCCc----eEEEEEECCCCcEEEeeeccccCCCccCcccc
Confidence            655 333333210     001111   12344444322221111    1456678877764321 11    112235667


Q ss_pred             ecCCCce-EEEEeCC-----CeEEEEEcCCCcceeeecC-CCcc---eeEEEEC-CCCC-EEEEEeCCCcEEEE--eCCC
Q 008496          364 DWRNNVS-FATSSTD-----NMIYVCKIGENRPIKTFAG-HQGE---VNCVKWD-PTGS-LLASCSDDVTAKIW--NMKQ  429 (563)
Q Consensus       364 ~~~~~~~-~~~~~~d-----~~i~~~~~~~~~~~~~~~~-h~~~---i~~~~~~-~~~~-~las~s~dg~i~iw--d~~~  429 (563)
                      .|.++.. ++..-.+     ..+.+|+..++.....+.. ..+.   .....|. +++. +|.....||--+||  +...
T Consensus       190 ~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~  269 (353)
T PF00930_consen  190 GWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDG  269 (353)
T ss_dssp             EEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTS
T ss_pred             eecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccc
Confidence            7866554 4433221     2356677755443222211 1222   2345554 5555 44455577866555  4444


Q ss_pred             CceeeeecccCCCEEE-EEEccCCCCCCCCCCcEEEEEEeCCC----eEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCC
Q 008496          430 DKYVHDLREHSKEIYT-IRWSPTGSGTNNPNQQLILASASFDS----TVKLWDVELGKLLYSLNGHREPVYSLAFSPTGE  504 (563)
Q Consensus       430 ~~~~~~~~~~~~~i~~-~~~~p~~~~~~~~~~~~~l~s~s~dg----~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~  504 (563)
                      +. ...+....-.|.. +.|.+.+.        .+..++..++    .|..-++..+..+..++.....-..++|||+|+
T Consensus       270 ~~-~~~lT~G~~~V~~i~~~d~~~~--------~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~Spdg~  340 (353)
T PF00930_consen  270 GK-PRQLTSGDWEVTSILGWDEDNN--------RIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFSPDGK  340 (353)
T ss_dssp             SE-EEESS-SSS-EEEEEEEECTSS--------EEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-TTSS
T ss_pred             cc-eeccccCceeecccceEcCCCC--------EEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEEECCCCC
Confidence            44 3345545555644 56666543        3555555432    455555652344556654444437999999999


Q ss_pred             EEEE
Q 008496          505 YLAS  508 (563)
Q Consensus       505 ~las  508 (563)
                      +++.
T Consensus       341 y~v~  344 (353)
T PF00930_consen  341 YYVD  344 (353)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            8874

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=97.87  E-value=8e-05  Score=74.73  Aligned_cols=73  Identities=16%  Similarity=0.196  Sum_probs=61.4

Q ss_pred             CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEecCCCEEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496          489 GHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLDFR  562 (563)
Q Consensus       489 ~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~~~~i~~l~w~~~g~~la~~~~~~~v~v~~~~  562 (563)
                      .....|.+.+++|+...|+.|..||.|.+||...+....+ ...-.+..++|+|+|..+++|+..|.+.+||+-
T Consensus       257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~-ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~A  329 (545)
T PF11768_consen  257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA-KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMA  329 (545)
T ss_pred             ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee-eecccceEEEEcCCCcEEEEEcCCceEEEEEee
Confidence            3667899999999999999999999999999987643322 333446789999999999999999999999974

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.86  E-value=0.0005  Score=69.70  Aligned_cols=142  Identities=17%  Similarity=0.274  Sum_probs=82.7

Q ss_pred             CcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEe
Q 008496          398 QGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWD  477 (563)
Q Consensus       398 ~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd  477 (563)
                      .-....+.++|+|++++.| .||...|+.....+...     .+....+.|.+.+          -+|+-...++|+|+.
T Consensus        32 ~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~k~-----~G~g~~~vw~~~n----------~yAv~~~~~~I~I~k   95 (443)
T PF04053_consen   32 EIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRNKA-----FGSGLSFVWSSRN----------RYAVLESSSTIKIYK   95 (443)
T ss_dssp             SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTTEEEE-----EEE-SEEEE-TSS----------EEEEE-TTS-EEEEE
T ss_pred             CcCCeeEEECCCCCEEEEE-cCCEEEEEEccCCcccc-----cCceeEEEEecCc----------cEEEEECCCeEEEEE
Confidence            3456789999999999885 46777777743333221     2344567888754          366666688899963


Q ss_pred             CCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEecCCCEEEEEEcCCCCEEEEEECCCeEE
Q 008496          478 VELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVC  557 (563)
Q Consensus       478 ~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~~~~i~~l~w~~~g~~la~~~~~~~v~  557 (563)
                      --..+....+.. ...+..|-.   |..|+..+.+ .|.+||+.++++++.+.... |..+-|+++|+++|..+.+ ++.
T Consensus        96 n~~~~~~k~i~~-~~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~~-vk~V~Ws~~g~~val~t~~-~i~  168 (443)
T PF04053_consen   96 NFKNEVVKSIKL-PFSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVSA-VKYVIWSDDGELVALVTKD-SIY  168 (443)
T ss_dssp             TTEE-TT------SS-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS-E--EEEEE-TTSSEEEEE-S--SEE
T ss_pred             cCccccceEEcC-CcccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecCC-CcEEEEECCCCEEEEEeCC-eEE
Confidence            222221112221 113444433   8888877765 79999999999999987553 8899999999999999766 677


Q ss_pred             EEEee
Q 008496          558 VLDFR  562 (563)
Q Consensus       558 v~~~~  562 (563)
                      |++..
T Consensus       169 il~~~  173 (443)
T PF04053_consen  169 ILKYN  173 (443)
T ss_dssp             EEEE-
T ss_pred             EEEec
Confidence            77653

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.80  E-value=0.00073  Score=70.24  Aligned_cols=108  Identities=22%  Similarity=0.330  Sum_probs=83.8

Q ss_pred             EEEEECCCCCEEEEEeCC----CeEEEEEcCCceeE--eeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeE
Q 008496          278 TTLDWNGEGTLLATGSYD----GQARIWSTNGDLKC--TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQ  351 (563)
Q Consensus       278 ~~l~~s~~g~~l~sg~~d----g~i~vw~~~~~~~~--~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~  351 (563)
                      +-..|+|...++++++..    |.|.||--.|....  +.+.|   +++++|+|..-.|+.|=.-|.+.+|...+.+...
T Consensus        19 ti~SWHPsePlfAVA~fS~er~GSVtIfadtGEPqr~Vt~P~h---atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~ht   95 (1416)
T KOG3617|consen   19 TISSWHPSEPLFAVASFSPERGGSVTIFADTGEPQRDVTYPVH---ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHT   95 (1416)
T ss_pred             cccccCCCCceeEEEEecCCCCceEEEEecCCCCCccccccee---hhhhccChHHHHHhhccccceeEEEecCCceeee
Confidence            345799999999998764    88999976665322  22222   4679999998778888778999999998888888


Q ss_pred             EeeecccCeEEEecCCC-ceEEEEeCCCeEEEEEcCCC
Q 008496          352 QFEFHSGPTLDVDWRNN-VSFATSSTDNMIYVCKIGEN  388 (563)
Q Consensus       352 ~~~~~~~~~~~~~~~~~-~~~~~~~~d~~i~~~~~~~~  388 (563)
                      ....|..++..++|..+ ..+++...-|.+..|.....
T Consensus        96 v~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~  133 (1416)
T KOG3617|consen   96 VVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVI  133 (1416)
T ss_pred             eccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeec
Confidence            88889999999999765 56677777888999887643

>smart00667 LisH Lissencephaly type-1-like homology motif

Probab=97.78  E-value=7.2e-06  Score=50.50  Aligned_cols=31  Identities=35%  Similarity=0.546  Sum_probs=28.5

Q ss_pred             ccchhhhhHHHHHhcCCceehhccccccCCc
Q 008496            6 SEELNYLVFRYLQESGLLHSAFVLGYEAGIN   36 (563)
Q Consensus         6 s~evN~Li~rYlqE~g~~~sA~~~~~E~~~~   36 (563)
                      -.++|.||+.||++.||..||.+|..|+.+.
T Consensus         3 ~~~l~~lI~~yL~~~g~~~ta~~l~~e~~~~   33 (34)
T smart00667        3 RSELNRLILEYLLRNGYEETAETLQKESGLS   33 (34)
T ss_pred             HHHHHHHHHHHHHHcCHHHHHHHHHHHhCCC
Confidence            3579999999999999999999999999875

Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly.

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.77  E-value=8.7e-05  Score=74.63  Aligned_cols=70  Identities=17%  Similarity=0.349  Sum_probs=61.2

Q ss_pred             CCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEe-cCCCEE-EEEEcCCCCEEEEEECCCeEEEEEee
Q 008496          492 EPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYT-GNGGIF-EVCWNKEGDKIAACFANHTVCVLDFR  562 (563)
Q Consensus       492 ~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~-~~~~i~-~l~w~~~g~~la~~~~~~~v~v~~~~  562 (563)
                      ..|.-+.|+|.-..||.+..+|.|.+..+. .+.+.+++ .+..+. ++||+|||+.||+|+.||+|++.|+-
T Consensus        21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve   92 (665)
T KOG4640|consen   21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVE   92 (665)
T ss_pred             cceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEcc
Confidence            357789999999999999999999999987 77778877 445565 99999999999999999999999973

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.75  E-value=0.047  Score=54.84  Aligned_cols=290  Identities=14%  Similarity=0.133  Sum_probs=132.7

Q ss_pred             ceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcC-CCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEEeCC
Q 008496          217 EVCACAWSPAGSLLASGSGDSTARIWTIADGTSNG-GAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYD  295 (563)
Q Consensus       217 ~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~d  295 (563)
                      .|+.+.|.++..-||.|-..|.+.||.+....... ......   ......+-........++.+.--.+..        
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~di~~r~~~~--------   71 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPD---LDYNFRRFSLNNSPGKLTDISDRAPPS--------   71 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE---------------------S--GGGSS-SEEE-GGG--TT--------
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcc---cCcccccccccCCCcceEEehhhCCcc--------
Confidence            48899999998889999999999999876433221 000000   000000000000011122111000000        


Q ss_pred             CeEEEEEcCC-ceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecCCCceEEEE
Q 008496          296 GQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATS  374 (563)
Q Consensus       296 g~i~vw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  374 (563)
                        +    .+| .....+....++|++++.+.-| +++.|..+|++.|.|++....+..-....            .+   
T Consensus        72 --~----~~gf~P~~l~~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~------------~~---  129 (395)
T PF08596_consen   72 --L----KEGFLPLTLLDAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRE------------SF---  129 (395)
T ss_dssp             -------SEEEEEEEEE---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG-----------------
T ss_pred             --c----ccccCchhheeccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccc------------cc---
Confidence              0    001 1122344568999999997555 88899999999999998766544321111            00   


Q ss_pred             eCCCeEEEEEcCCCcceeeecCCCcceeEEEEC-----CCC---CEEEEEeCCCcEEEEeCCC---Ccee----eeeccc
Q 008496          375 STDNMIYVCKIGENRPIKTFAGHQGEVNCVKWD-----PTG---SLLASCSDDVTAKIWNMKQ---DKYV----HDLREH  439 (563)
Q Consensus       375 ~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~-----~~~---~~las~s~dg~i~iwd~~~---~~~~----~~~~~~  439 (563)
                                        .-......|+++.|.     .|+   -++++|.+.|.+.+|.+.-   +...    .....+
T Consensus       130 ------------------~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~  191 (395)
T PF08596_consen  130 ------------------LSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNH  191 (395)
T ss_dssp             ------------------T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--S
T ss_pred             ------------------cccccccCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccC
Confidence                              000011123333332     222   3567788888888886531   2221    111245


Q ss_pred             CCCEEEEEEc-cC-CCCCC-----------CCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEE-----cC
Q 008496          440 SKEIYTIRWS-PT-GSGTN-----------NPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAF-----SP  501 (563)
Q Consensus       440 ~~~i~~~~~~-p~-~~~~~-----------~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~-----sp  501 (563)
                      .++|..+..- .+ |....           ...-+.+++.+ .+..+|++...+.+..+...........+++     ..
T Consensus       192 ~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvv-Se~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~  270 (395)
T PF08596_consen  192 DSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVV-SESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRN  270 (395)
T ss_dssp             S----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE--SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EE
T ss_pred             CCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEE-cccceEEEeCCCCcccceeeccccccceEEEEeecccC
Confidence            5666665522 21 11100           00011233333 4678999999888776655432223334455     23


Q ss_pred             CCCEEEEEeCCCcEEEEecCCCeeEEEEecCCC-----EEEEEEcCCCCEEEEEECCCeEEEE
Q 008496          502 TGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGG-----IFEVCWNKEGDKIAACFANHTVCVL  559 (563)
Q Consensus       502 dg~~lasgs~dg~v~iw~~~~~~~~~~~~~~~~-----i~~l~w~~~g~~la~~~~~~~v~v~  559 (563)
                      .+..|++-..+|.|++|.+..-+.+....-...     +...+++++|+.+...+.. .+.++
T Consensus       271 ~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~~Gdi~~~~gps-E~~l~  332 (395)
T PF08596_consen  271 GGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISRNGDIFYWTGPS-EIQLF  332 (395)
T ss_dssp             EEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-TTS-EEEE-SSS-EEEEE
T ss_pred             CceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEECCCCCEEEEeCcc-cEEEE
Confidence            567888889999999999998887777654321     2356778889877666333 44443

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=97.73  E-value=0.021  Score=54.77  Aligned_cols=252  Identities=13%  Similarity=0.170  Sum_probs=136.9

Q ss_pred             EEEECCCCCEEEEEeC----------CCeEEEEEcCCce-eE--eecc-CCC----CEEEEEeCCCCCEEEEee--CCCc
Q 008496          279 TLDWNGEGTLLATGSY----------DGQARIWSTNGDL-KC--TLSK-HKG----PIFSLKWNKKGDYLLTGS--CDKT  338 (563)
Q Consensus       279 ~l~~s~~g~~l~sg~~----------dg~i~vw~~~~~~-~~--~~~~-h~~----~V~~l~~~~~~~~l~s~s--~D~~  338 (563)
                      .+..+|+|+.+.+++.          .-.|.+||...-. ..  .+.. |..    ....+.++.+|++++...  --.+
T Consensus        40 ~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~S  119 (342)
T PF06433_consen   40 NVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATS  119 (342)
T ss_dssp             EEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEE
T ss_pred             ceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCe
Confidence            3567899988886532          3478999976431 11  2222 111    122356788999887653  4568


Q ss_pred             EEEEECCCCceeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCC-Ccceee----ecCCCc-ceeEEEECCCCCE
Q 008496          339 AIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGE-NRPIKT----FAGHQG-EVNCVKWDPTGSL  412 (563)
Q Consensus       339 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~-~~~~~~----~~~h~~-~i~~~~~~~~~~~  412 (563)
                      |.|-|+..++++..+.... ...-.- ..+..|.+-+.||.+....++. +++...    |..-.. .+..-++...+..
T Consensus       120 VtVVDl~~~kvv~ei~~PG-C~~iyP-~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~  197 (342)
T PF06433_consen  120 VTVVDLAAKKVVGEIDTPG-CWLIYP-SGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGR  197 (342)
T ss_dssp             EEEEETTTTEEEEEEEGTS-EEEEEE-EETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTE
T ss_pred             EEEEECCCCceeeeecCCC-EEEEEe-cCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCe
Confidence            9999999988877665322 222222 2345688888999988888873 333221    111111 1233344444444


Q ss_pred             EEEEeCCCcEEEEeCCCCceee--eecccCCCEEEEEEccCCCCC---CCCCCcEEEE-EEeCCC-------eEEEEeCC
Q 008496          413 LASCSDDVTAKIWNMKQDKYVH--DLREHSKEIYTIRWSPTGSGT---NNPNQQLILA-SASFDS-------TVKLWDVE  479 (563)
Q Consensus       413 las~s~dg~i~iwd~~~~~~~~--~~~~~~~~i~~~~~~p~~~~~---~~~~~~~~l~-s~s~dg-------~i~iwd~~  479 (563)
                      ++--+.+|.|+--|+.......  .+..-...-..-.|.|.|-..   +.+.+.++++ --+.+|       .|-++|+.
T Consensus       198 ~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~  277 (342)
T PF06433_consen  198 LYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLK  277 (342)
T ss_dssp             EEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETT
T ss_pred             EEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECC
Confidence            4556777877777765543211  110000000001355544321   1122233322 222222       37777999


Q ss_pred             CCeEEEEecCCCCCEEEEEEcCCCC-EEEEE-eCCCcEEEEecCCCeeEEEEecCC
Q 008496          480 LGKLLYSLNGHREPVYSLAFSPTGE-YLASG-SLDKSMHIWSLKEGKIVKTYTGNG  533 (563)
Q Consensus       480 ~~~~~~~~~~h~~~i~~l~~spdg~-~lasg-s~dg~v~iw~~~~~~~~~~~~~~~  533 (563)
                      +++.+.++.. ..++.+|+.|.|.+ +|.+. ..++.|.|||..+|+++++...-+
T Consensus       278 t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~lG  332 (342)
T PF06433_consen  278 THKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQLG  332 (342)
T ss_dssp             TTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE---S
T ss_pred             CCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhccC
Confidence            9999988863 34688999998864 66554 457899999999999999886543

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.68  E-value=0.00022  Score=71.88  Aligned_cols=93  Identities=20%  Similarity=0.408  Sum_probs=77.5

Q ss_pred             CCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEE-EEEEcCCCCEEEEEeCCCcEEEE
Q 008496          440 SKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVY-SLAFSPTGEYLASGSLDKSMHIW  518 (563)
Q Consensus       440 ~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~-~l~~spdg~~lasgs~dg~v~iw  518 (563)
                      ...+..+.|+|.-.         ++|.+..+|.|-+..+. .+.++++.-|..+++ +++|.|||+.||.|=.||+|++-
T Consensus        20 ~~~i~~~ewnP~~d---------LiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~   89 (665)
T KOG4640|consen   20 PINIKRIEWNPKMD---------LIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLH   89 (665)
T ss_pred             ccceEEEEEcCccc---------hhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEE
Confidence            45678889999754         78999999999998887 777888887777777 99999999999999999999999


Q ss_pred             ecCCCeeEEE--EecCCCEEEEEEcC
Q 008496          519 SLKEGKIVKT--YTGNGGIFEVCWNK  542 (563)
Q Consensus       519 ~~~~~~~~~~--~~~~~~i~~l~w~~  542 (563)
                      |+.++..+..  +.....|..+-|++
T Consensus        90 Dve~~~~l~~~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   90 DVEKGGRLVSFLFSVETDISKGIWDR  115 (665)
T ss_pred             EccCCCceeccccccccchheeeccc
Confidence            9999988777  44455667777763

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.66  E-value=0.00096  Score=68.24  Aligned_cols=119  Identities=16%  Similarity=0.237  Sum_probs=86.7

Q ss_pred             CeEEEEECCCCCEEEEEeCCCeEEEEEcCCceeEeec--cCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEe
Q 008496          276 DVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLS--KHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQF  353 (563)
Q Consensus       276 ~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~~~~~~--~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~  353 (563)
                      .|.--+++..+++++.|+.-|.+.+|+..+.....+.  +-.+.+..+..|++..+++.|+..|.|.++-++.+....  
T Consensus        35 ~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~--  112 (726)
T KOG3621|consen   35 RVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRD--  112 (726)
T ss_pred             eEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCc--
Confidence            3444566778899999999999999998876544433  355566777788888888888888999888765432110  


Q ss_pred             eecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCC
Q 008496          354 EFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQ  429 (563)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~  429 (563)
                                     ..+++.        ++          ..|...|+|++|++++..+.+|...|+|.+-.++.
T Consensus       113 ---------------~~~~t~--------~d----------~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  113 ---------------LDYVTP--------CD----------KSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             ---------------ceeecc--------cc----------ccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence                           000000        00          12778899999999999999999999998887766

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.64  E-value=0.065  Score=51.43  Aligned_cols=225  Identities=16%  Similarity=0.151  Sum_probs=122.1

Q ss_pred             CCCEEEEEeCCCeEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEe-----------
Q 008496          285 EGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQF-----------  353 (563)
Q Consensus       285 ~g~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~-----------  353 (563)
                      .++.|+.|+.+| +.+++...........+..+|..+...|.-+.|++-+ |+.+.++++.........           
T Consensus         6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~   83 (275)
T PF00780_consen    6 WGDRLLVGTEDG-LYVYDLSDPSKPTRILKLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRSL   83 (275)
T ss_pred             CCCEEEEEECCC-EEEEEecCCccceeEeecceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccccc
Confidence            467899999988 8888873222222222344599999999877777654 599999998654332210           


Q ss_pred             --ee-cccCeEEEe---cCCCceEEEEeCCCeEEEEEcCCC-----cceeeecCCCcceeEEEECCCCCEEEEEeCCCcE
Q 008496          354 --EF-HSGPTLDVD---WRNNVSFATSSTDNMIYVCKIGEN-----RPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTA  422 (563)
Q Consensus       354 --~~-~~~~~~~~~---~~~~~~~~~~~~d~~i~~~~~~~~-----~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i  422 (563)
                        .. ....+..+.   ......+........|.+|.....     +..+.+.- ...+.+++|.  ++.|+.|..+ ..
T Consensus        84 ~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~l-p~~~~~i~~~--~~~i~v~~~~-~f  159 (275)
T PF00780_consen   84 PTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISL-PDPPSSIAFL--GNKICVGTSK-GF  159 (275)
T ss_pred             cccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEc-CCCcEEEEEe--CCEEEEEeCC-ce
Confidence              00 011122222   223334444555557777766542     33444432 3567888888  5566666654 47


Q ss_pred             EEEeCCCCceeeeecccC------------CCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEE--Eec
Q 008496          423 KIWNMKQDKYVHDLREHS------------KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLY--SLN  488 (563)
Q Consensus       423 ~iwd~~~~~~~~~~~~~~------------~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~--~~~  488 (563)
                      .+.|+.++....-+....            .++..+...         +++ +|++  .|..-.+.|. .|+...  .+.
T Consensus       160 ~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~e-~Ll~--~~~~g~fv~~-~G~~~r~~~i~  226 (275)
T PF00780_consen  160 YLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS---------DNE-FLLC--YDNIGVFVNK-NGEPSRKSTIQ  226 (275)
T ss_pred             EEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC---------Cce-EEEE--ecceEEEEcC-CCCcCcccEEE
Confidence            778888665432221111            111111111         111 3332  2333333333 233222  222


Q ss_pred             CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEecC
Q 008496          489 GHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGN  532 (563)
Q Consensus       489 ~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~~  532 (563)
                      - .....++++.  ..||+..+.+ .|.||++.++++++++...
T Consensus       227 W-~~~p~~~~~~--~pyli~~~~~-~iEV~~~~~~~lvQ~i~~~  266 (275)
T PF00780_consen  227 W-SSAPQSVAYS--SPYLIAFSSN-SIEVRSLETGELVQTIPLP  266 (275)
T ss_pred             c-CCchhEEEEE--CCEEEEECCC-EEEEEECcCCcEEEEEECC
Confidence            1 2234556653  3477776654 5999999999999988754

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.62  E-value=0.044  Score=49.73  Aligned_cols=205  Identities=15%  Similarity=0.128  Sum_probs=114.4

Q ss_pred             CCEEEEeeCCCcEEEEECCCCceeEEee----ecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCccee
Q 008496          327 GDYLLTGSCDKTAIVWDVKTEEWKQQFE----FHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVN  402 (563)
Q Consensus       327 ~~~l~s~s~D~~v~iwd~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~  402 (563)
                      ..+++.|+..+.++.-|..++...-.-.    ....+++     -+..++.+...+.+|+.+..++..+..|..-..--.
T Consensus        23 kT~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~v-----vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~   97 (354)
T KOG4649|consen   23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIV-----VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKV   97 (354)
T ss_pred             ceEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEE-----ECCEEEEEEccCcEEEEEecchhheeeeeehhhhcc
Confidence            3567778888888888888776543211    1111111     122367778888899988888876666553322222


Q ss_pred             EEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC-
Q 008496          403 CVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG-  481 (563)
Q Consensus       403 ~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~-  481 (563)
                      .....+++.++..|+.|++...-|.++..++...+-..+...+-+..|.       +..++  .+...|.|.--....+ 
T Consensus        98 ~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g-------~~sly--~a~t~G~vlavt~~~~~  168 (354)
T KOG4649|consen   98 RAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPG-------DGSLY--AAITAGAVLAVTKNPYS  168 (354)
T ss_pred             ceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCC-------CceEE--EEeccceEEEEccCCCC
Confidence            4556889999999999999999999998888765433222222222221       11222  3333344433333222 


Q ss_pred             -eEEEEecCCCCCEEEEEEcC--CCCEEEEEeCCCcEEEEecCCCeeEEEEecCCCEE-EEEEc-CCCCEEEEE
Q 008496          482 -KLLYSLNGHREPVYSLAFSP--TGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIF-EVCWN-KEGDKIAAC  550 (563)
Q Consensus       482 -~~~~~~~~h~~~i~~l~~sp--dg~~lasgs~dg~v~iw~~~~~~~~~~~~~~~~i~-~l~w~-~~g~~la~~  550 (563)
                       ..++... ...||.+   +|  -+.++..+.-||.+.-++ ..|+.+..+...++|+ +.+-+ |.-+.|..+
T Consensus       169 ~~~~w~~~-~~~PiF~---splcv~~sv~i~~VdG~l~~f~-~sG~qvwr~~t~GpIf~~Pc~s~Ps~q~i~~~  237 (354)
T KOG4649|consen  169 STEFWAAT-RFGPIFA---SPLCVGSSVIITTVDGVLTSFD-ESGRQVWRPATKGPIFMEPCESRPSCQQISLE  237 (354)
T ss_pred             cceehhhh-cCCcccc---CceeccceEEEEEeccEEEEEc-CCCcEEEeecCCCceecccccCCCcceEEEEe
Confidence             1111111 1234432   12  144566677788887777 6677777776666654 23333 333444444

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.61  E-value=0.098  Score=52.73  Aligned_cols=186  Identities=16%  Similarity=0.163  Sum_probs=125.2

Q ss_pred             CCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeC---CCcEEEEeCCCCceeeeecccCCC
Q 008496          366 RNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD---DVTAKIWNMKQDKYVHDLREHSKE  442 (563)
Q Consensus       366 ~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~---dg~i~iwd~~~~~~~~~~~~~~~~  442 (563)
                      .....++....++.|.+.+....+.+....--. ....++++|+++.+..+..   ++++.+.|..+.+.......-..+
T Consensus        84 ~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P  162 (381)
T COG3391          84 AGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP  162 (381)
T ss_pred             CCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc
Confidence            344466777777888888865555443332111 4557999999977655444   688888998888877665433334


Q ss_pred             EEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEE-E----ecCCCCCEEEEEEcCCCCEEEEEeC---CCc
Q 008496          443 IYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLY-S----LNGHREPVYSLAFSPTGEYLASGSL---DKS  514 (563)
Q Consensus       443 i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~-~----~~~h~~~i~~l~~spdg~~lasgs~---dg~  514 (563)
                       ..+++.|+|.        .++++-+.++.|.+.|........ .    +..... -..+.++|+|.++...-.   ++.
T Consensus       163 -~~~a~~p~g~--------~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~-P~~i~v~~~g~~~yV~~~~~~~~~  232 (381)
T COG3391         163 -TGVAVDPDGN--------KVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTG-PAGIAVDPDGNRVYVANDGSGSNN  232 (381)
T ss_pred             -ceEEECCCCC--------eEEEEecCCCeEEEEeCCCcceeccccccccccCCC-CceEEECCCCCEEEEEeccCCCce
Confidence             7788888875        345555788999999977655442 1    222222 367899999986654433   369


Q ss_pred             EEEEecCCCeeEEE-EecCC-CEEEEEEcCCCCEEEEEEC-CCeEEEEEee
Q 008496          515 MHIWSLKEGKIVKT-YTGNG-GIFEVCWNKEGDKIAACFA-NHTVCVLDFR  562 (563)
Q Consensus       515 v~iw~~~~~~~~~~-~~~~~-~i~~l~w~~~g~~la~~~~-~~~v~v~~~~  562 (563)
                      +.+.|..++.+... +.... ....+..+|+|+.+.+... .+.+.++|.+
T Consensus       233 v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~  283 (381)
T COG3391         233 VLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGA  283 (381)
T ss_pred             EEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCC
Confidence            99999999887765 33323 4667899999998887744 4778888753

>smart00320 WD40 WD40 repeats

Probab=97.61  E-value=0.00021  Score=44.48  Aligned_cols=39  Identities=54%  Similarity=0.961  Sum_probs=34.2

Q ss_pred             CeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 008496          481 GKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWS  519 (563)
Q Consensus       481 ~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~  519 (563)
                      ++++..+..|...|.+++|+|++.++++++.|+.+++|+
T Consensus         2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            345666777888999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=97.58  E-value=0.092  Score=51.49  Aligned_cols=271  Identities=15%  Similarity=0.208  Sum_probs=122.9

Q ss_pred             EECCCCCEEEEEe-CCCe--EEEEEcCCceeEeeccCCC-CEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeec
Q 008496          281 DWNGEGTLLATGS-YDGQ--ARIWSTNGDLKCTLSKHKG-PIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFH  356 (563)
Q Consensus       281 ~~s~~g~~l~sg~-~dg~--i~vw~~~~~~~~~~~~h~~-~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~  356 (563)
                      +|.++|+.|+.++ .||.  +.+.|+.......|....+ ...+..++|+++.++-.....+|+--|+.+.+....+...
T Consensus        42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p  121 (386)
T PF14583_consen   42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVP  121 (386)
T ss_dssp             -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--
T ss_pred             CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECC
Confidence            5788997666554 4654  4555666666666655432 2335667888888766556678888999998766655544


Q ss_pred             ccCeEEEecC--CCceEEEE-----------------------eCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCC
Q 008496          357 SGPTLDVDWR--NNVSFATS-----------------------STDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGS  411 (563)
Q Consensus       357 ~~~~~~~~~~--~~~~~~~~-----------------------~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~  411 (563)
                      ..-.-...|.  .+...+.+                       .....|+..++.++..-..+. -...+.-+.|+|...
T Consensus       122 ~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~-~~~wlgH~~fsP~dp  200 (386)
T PF14583_consen  122 DDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE-DTDWLGHVQFSPTDP  200 (386)
T ss_dssp             TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE-ESS-EEEEEEETTEE
T ss_pred             cccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe-cCccccCcccCCCCC
Confidence            3322222331  11111111                       011223334444433322222 233456788888654


Q ss_pred             -EEEEEeC---CC-cEEEEeCCCCc-eeeeecccC--CCEEEEEEccCCCCCCCCCCcEEEEEE---eCCCeEEEEeCCC
Q 008496          412 -LLASCSD---DV-TAKIWNMKQDK-YVHDLREHS--KEIYTIRWSPTGSGTNNPNQQLILASA---SFDSTVKLWDVEL  480 (563)
Q Consensus       412 -~las~s~---dg-~i~iwd~~~~~-~~~~~~~~~--~~i~~~~~~p~~~~~~~~~~~~~l~s~---s~dg~i~iwd~~~  480 (563)
                       +|+-|.+   +. .-|||-+++.. ....+..+.  ..+..=-|.|+|..       +...+.   +.+..|.-+|+.+
T Consensus       201 ~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~-------i~y~~~~~~~~~~~i~~~d~~t  273 (386)
T PF14583_consen  201 TLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGST-------IWYDSYTPGGQDFWIAGYDPDT  273 (386)
T ss_dssp             EEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS--------EEEEEEETTT--EEEEEE-TTT
T ss_pred             CEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCE-------EEEEeecCCCCceEEEeeCCCC
Confidence             4555554   33 24778665332 122222222  22344468888752       122222   2233566677777


Q ss_pred             CeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCC----------------cEEEEecCCCeeEEEEec---------CCCE
Q 008496          481 GKLLYSLNGHREPVYSLAFSPTGEYLASGSLDK----------------SMHIWSLKEGKIVKTYTG---------NGGI  535 (563)
Q Consensus       481 ~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg----------------~v~iw~~~~~~~~~~~~~---------~~~i  535 (563)
                      ++......  ..+....--|+||+++|-=+.|.                .|.++++..+........         +..+
T Consensus       274 ~~~~~~~~--~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~  351 (386)
T PF14583_consen  274 GERRRLME--MPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQV  351 (386)
T ss_dssp             --EEEEEE--E-SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE-------BTTBSST
T ss_pred             CCceEEEe--CCceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcceeecCCCcc
Confidence            65432221  12334455689999887534332                466788887764322221         1111


Q ss_pred             --EEEEEcCCCCEEEEEE-CCCeEEEEEe
Q 008496          536 --FEVCWNKEGDKIAACF-ANHTVCVLDF  561 (563)
Q Consensus       536 --~~l~w~~~g~~la~~~-~~~~v~v~~~  561 (563)
                        ..++|+|||+.|...+ ..|...||=+
T Consensus       352 ~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v  380 (386)
T PF14583_consen  352 THPHPSFSPDGKWVLFRSDMEGPPAVYLV  380 (386)
T ss_dssp             T----EE-TTSSEEEEEE-TTSS-EEEEE
T ss_pred             CCCCCccCCCCCEEEEECCCCCCccEEEE
Confidence              4689999999887654 4667777643

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.54  E-value=0.0043  Score=65.56  Aligned_cols=179  Identities=12%  Similarity=0.153  Sum_probs=94.1

Q ss_pred             CCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEe------CCCcEEEEeCCCCceeeeecccCCCEEEEEEcc
Q 008496          377 DNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCS------DDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSP  450 (563)
Q Consensus       377 d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s------~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p  450 (563)
                      +|.+...+-....|+.-..+....+...+++|+|+.+|...      .|+.-.||-...+.....+.. ....+.-.|+|
T Consensus       328 ~G~l~~~~~~~~~pv~g~~g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~-g~~~t~PsWsp  406 (591)
T PRK13616        328 DGSLVSVDGQGVTPVPGAFGQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLE-GHSLTRPSWSL  406 (591)
T ss_pred             CCeEEEecCCCeeeCCCccccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeec-CCCCCCceECC
Confidence            55554433222233333333334678899999999887655      344445553322221122221 22367789999


Q ss_pred             CCCCCCCC--CCcEEEEE-EeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEE---EecCCCe
Q 008496          451 TGSGTNNP--NQQLILAS-ASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHI---WSLKEGK  524 (563)
Q Consensus       451 ~~~~~~~~--~~~~~l~s-~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~i---w~~~~~~  524 (563)
                      +|...+.-  ......++ ....+.+.+.++..+....   .....|..+.|||||..||.-. +++|.+   -....|.
T Consensus       407 DG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~  482 (591)
T PRK13616        407 DADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQ  482 (591)
T ss_pred             CCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCc
Confidence            86521100  00111111 1123444444555443322   2345799999999999888655 477777   3434453


Q ss_pred             e-E---EEE-ecCCC-EEEEEEcCCCCEEEEEECCCeEEEEEe
Q 008496          525 I-V---KTY-TGNGG-IFEVCWNKEGDKIAACFANHTVCVLDF  561 (563)
Q Consensus       525 ~-~---~~~-~~~~~-i~~l~w~~~g~~la~~~~~~~v~v~~~  561 (563)
                      . +   ..+ ..-+. +.++.|..++..+ ++..++...||-+
T Consensus       483 ~~l~~~~~l~~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v  524 (591)
T PRK13616        483 YALTNPREVGPGLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYV  524 (591)
T ss_pred             eeecccEEeecccCCccccceEecCCEEE-EEecCCCCceEEE
Confidence            1 1   111 12222 5789999999854 5555555555544

>smart00320 WD40 WD40 repeats

Probab=97.52  E-value=0.00022  Score=44.40  Aligned_cols=36  Identities=44%  Similarity=0.793  Sum_probs=32.3

Q ss_pred             eeEecCCCCceEEEEECCCCCEEEEeeCCCcEEEEe
Q 008496          208 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWT  243 (563)
Q Consensus       208 ~~~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~  243 (563)
                      +..+..|...|.+++|+|.+.++++|+.|+.+++|+
T Consensus         5 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        5 LKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            345678889999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.48  E-value=0.017  Score=45.63  Aligned_cols=91  Identities=13%  Similarity=0.181  Sum_probs=65.0

Q ss_pred             EEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEecCCCEEEEEE-
Q 008496          462 LILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCW-  540 (563)
Q Consensus       462 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~~~~i~~l~w-  540 (563)
                      .-|+.||.|..||+|+-.  ..+.++... ..|++++-... ..++.|-.+|+|-+|+-.  ..+...+.+..+.++++ 
T Consensus        16 ~eLlvGs~D~~IRvf~~~--e~~~Ei~e~-~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~--~RlWRiKSK~~~~~~~~~   89 (111)
T PF14783_consen   16 NELLVGSDDFEIRVFKGD--EIVAEITET-DKVTSLCSLGG-GRFAYALANGTVGVYDRS--QRLWRIKSKNQVTSMAFY   89 (111)
T ss_pred             ceEEEecCCcEEEEEeCC--cEEEEEecc-cceEEEEEcCC-CEEEEEecCCEEEEEeCc--ceeeeeccCCCeEEEEEE
Confidence            468899999999999754  677777754 56778777666 567888999999999753  33444455555666553 


Q ss_pred             --cCCC-CEEEEEECCCeEEE
Q 008496          541 --NKEG-DKIAACFANHTVCV  558 (563)
Q Consensus       541 --~~~g-~~la~~~~~~~v~v  558 (563)
                        +.|| ..|++|.+||.|-+
T Consensus        90 D~~gdG~~eLI~GwsnGkve~  110 (111)
T PF14783_consen   90 DINGDGVPELIVGWSNGKVEV  110 (111)
T ss_pred             cCCCCCceEEEEEecCCeEEe
Confidence              3344 38999999998743

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.43  E-value=0.057  Score=54.25  Aligned_cols=235  Identities=14%  Similarity=0.225  Sum_probs=121.5

Q ss_pred             CEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCC---------
Q 008496          317 PIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGE---------  387 (563)
Q Consensus       317 ~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~---------  387 (563)
                      .|+.+.|.+...-|+.|...|.|.||-....+.-.  .....+..+..+.   .+-.....+  .+.|+..         
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~--~~~~~~~~~~~~~---~~~~~~~~~--~l~di~~r~~~~~~~g   75 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYG--NREQPPDLDYNFR---RFSLNNSPG--KLTDISDRAPPSLKEG   75 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE-----------------------S--GGGSS---SEEE-GGG--TT-SEE
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCC--ccCCCcccCcccc---cccccCCCc--ceEEehhhCCcccccc
Confidence            57899999998899999999999998654322111  0000011111000   000000001  1111111         


Q ss_pred             CcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeee--ecc------cCCCEEEEEEccCCCCCCCCC
Q 008496          388 NRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHD--LRE------HSKEIYTIRWSPTGSGTNNPN  459 (563)
Q Consensus       388 ~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~--~~~------~~~~i~~~~~~p~~~~~~~~~  459 (563)
                      -.|...+....++|++++.| |=.++|.|..+|.+.|.|++....+..  +..      ....++++.|..-... ....
T Consensus        76 f~P~~l~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~-~D~y  153 (395)
T PF08596_consen   76 FLPLTLLDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLG-GDGY  153 (395)
T ss_dssp             EEEEEEE---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-T-TSSS
T ss_pred             cCchhheeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecC-CCcc
Confidence            12445555668899999997 667999999999999999988776654  222      2345788888742211 1122


Q ss_pred             CcEEEEEEeCCCeEEEEeCCC---CeE----EEEecCCCCCEEEEE-EcCC-C--------------------CEEEEEe
Q 008496          460 QQLILASASFDSTVKLWDVEL---GKL----LYSLNGHREPVYSLA-FSPT-G--------------------EYLASGS  510 (563)
Q Consensus       460 ~~~~l~s~s~dg~i~iwd~~~---~~~----~~~~~~h~~~i~~l~-~spd-g--------------------~~lasgs  510 (563)
                      ....|..|...|.+.+|.+.-   +.-    ......+.++|..|. |+.+ |                    .+++++ 
T Consensus       154 SSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvv-  232 (395)
T PF08596_consen  154 SSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVV-  232 (395)
T ss_dssp             EEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-
T ss_pred             cceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEE-
Confidence            345788899999999997641   211    112234667777664 5322 1                    134444 


Q ss_pred             CCCcEEEEecCCCeeEEEEecCCC-EEEEEE-----cCCCCEEEEEECCCeEEEEEe
Q 008496          511 LDKSMHIWSLKEGKIVKTYTGNGG-IFEVCW-----NKEGDKIAACFANHTVCVLDF  561 (563)
Q Consensus       511 ~dg~v~iw~~~~~~~~~~~~~~~~-i~~l~w-----~~~g~~la~~~~~~~v~v~~~  561 (563)
                      .+..++|+...+.+.......... ...+++     ...+..|++-+.+|.+.+|.+
T Consensus       233 Se~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SL  289 (395)
T PF08596_consen  233 SESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSL  289 (395)
T ss_dssp             -SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEET
T ss_pred             cccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEEC
Confidence            466799999988776544332212 223445     345677888899999999864

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.42  E-value=0.053  Score=53.36  Aligned_cols=208  Identities=14%  Similarity=0.166  Sum_probs=117.4

Q ss_pred             cEEEEECCCCceeEEeeecccC-eEE---EecCC-----CceEEEEeC----------CCeEEEEEcCCC----cceeee
Q 008496          338 TAIVWDVKTEEWKQQFEFHSGP-TLD---VDWRN-----NVSFATSST----------DNMIYVCKIGEN----RPIKTF  394 (563)
Q Consensus       338 ~v~iwd~~~~~~~~~~~~~~~~-~~~---~~~~~-----~~~~~~~~~----------d~~i~~~~~~~~----~~~~~~  394 (563)
                      .|++.|..+.+.+..+.+.... +.+   +.+..     ...++.+..          .|.|+++++...    ..+...
T Consensus         3 ~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i   82 (321)
T PF03178_consen    3 SIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLI   82 (321)
T ss_dssp             EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEE
T ss_pred             EEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEE
Confidence            5777787777776666654432 222   22232     233444321          288999999874    222222


Q ss_pred             --cCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCc-eeee-ecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCC
Q 008496          395 --AGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDK-YVHD-LREHSKEIYTIRWSPTGSGTNNPNQQLILASASFD  470 (563)
Q Consensus       395 --~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~-~~~~-~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~d  470 (563)
                        ....+.|.+++-- .+.++++.  .+.|.+|++...+ .... +......+.++....+           +++.|...
T Consensus        83 ~~~~~~g~V~ai~~~-~~~lv~~~--g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~-----------~I~vgD~~  148 (321)
T PF03178_consen   83 HSTEVKGPVTAICSF-NGRLVVAV--GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKN-----------YILVGDAM  148 (321)
T ss_dssp             EEEEESS-EEEEEEE-TTEEEEEE--TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETT-----------EEEEEESS
T ss_pred             EEEeecCcceEhhhh-CCEEEEee--cCEEEEEEccCcccchhhheecceEEEEEEecccc-----------EEEEEEcc
Confidence              2246778888765 44444333  4689999988776 3322 1122335666665432           67788887


Q ss_pred             CeEEEEeCCC-CeEEEEe--cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCC-------C--ee--EEEEecCCCEE
Q 008496          471 STVKLWDVEL-GKLLYSL--NGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKE-------G--KI--VKTYTGNGGIF  536 (563)
Q Consensus       471 g~i~iwd~~~-~~~~~~~--~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~-------~--~~--~~~~~~~~~i~  536 (563)
                      ..|.++..+. +..+..+  ......++++.|-+|+..++.+..+|.|.++....       +  ++  ...+.-...|+
T Consensus       149 ~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~  228 (321)
T PF03178_consen  149 KSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVN  228 (321)
T ss_dssp             SSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EE
T ss_pred             cCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccc
Confidence            8888774432 3322222  22345688999987777999999999999998763       2  22  23344455677


Q ss_pred             EE---EEcC--CCC------EEEEEECCCeEEEE
Q 008496          537 EV---CWNK--EGD------KIAACFANHTVCVL  559 (563)
Q Consensus       537 ~l---~w~~--~g~------~la~~~~~~~v~v~  559 (563)
                      .+   +..|  .+.      .+..+..+|.+.++
T Consensus       229 ~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l  262 (321)
T PF03178_consen  229 SFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL  262 (321)
T ss_dssp             EEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred             eEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence            66   5555  222      47788899988743

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=97.41  E-value=3.9e-05  Score=77.04  Aligned_cols=182  Identities=15%  Similarity=0.258  Sum_probs=112.1

Q ss_pred             ceEEEEeCCCeEEEEEcCCCcc--eeeecCCCcceeEEEECC-CCCEEEEEe----CCCcEEEEeCCCCc--eee--eec
Q 008496          369 VSFATSSTDNMIYVCKIGENRP--IKTFAGHQGEVNCVKWDP-TGSLLASCS----DDVTAKIWNMKQDK--YVH--DLR  437 (563)
Q Consensus       369 ~~~~~~~~d~~i~~~~~~~~~~--~~~~~~h~~~i~~~~~~~-~~~~las~s----~dg~i~iwd~~~~~--~~~--~~~  437 (563)
                      ..++.+..+|.|-++..+...-  -....+|...+++++|++ |.++||.|-    .|..+.|||+.+.-  +..  .|.
T Consensus        71 cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs  150 (783)
T KOG1008|consen   71 CILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFS  150 (783)
T ss_pred             hhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccc
Confidence            3456677778888887765322  233456778899999998 456677664    36689999987762  111  121


Q ss_pred             c-cCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCe-EEEEecCCCCCEEEEEEcC-CCCEEEEEeCCCc
Q 008496          438 E-HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK-LLYSLNGHREPVYSLAFSP-TGEYLASGSLDKS  514 (563)
Q Consensus       438 ~-~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~-~~~~~~~h~~~i~~l~~sp-dg~~lasgs~dg~  514 (563)
                      + -.....+++|-.+.         .++.+|.....+.++|++-.. ....+.  ...+..+..+| .+.|+++-. ||.
T Consensus       151 ~~~l~gqns~cwlrd~---------klvlaGm~sr~~~ifdlRqs~~~~~svn--Tk~vqG~tVdp~~~nY~cs~~-dg~  218 (783)
T KOG1008|consen  151 SSTLDGQNSVCWLRDT---------KLVLAGMTSRSVHIFDLRQSLDSVSSVN--TKYVQGITVDPFSPNYFCSNS-DGD  218 (783)
T ss_pred             cccccCccccccccCc---------chhhcccccchhhhhhhhhhhhhhhhhh--hhhcccceecCCCCCceeccc-cCc
Confidence            1 12233466665332         267788888899999987221 111221  22355567777 677888766 999


Q ss_pred             EEEEec-CCCe-eEEEEec-----CCCEEEEEEcCCCC-EEEEEEC-CCeEEEEEee
Q 008496          515 MHIWSL-KEGK-IVKTYTG-----NGGIFEVCWNKEGD-KIAACFA-NHTVCVLDFR  562 (563)
Q Consensus       515 v~iw~~-~~~~-~~~~~~~-----~~~i~~l~w~~~g~-~la~~~~-~~~v~v~~~~  562 (563)
                      |.+||. ++-+ ++.....     ...++.++|.|... .||++.. .++|..+|++
T Consensus       219 iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~  275 (783)
T KOG1008|consen  219 IAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC  275 (783)
T ss_pred             eeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence            999993 3221 1221111     23488999999754 5555544 4577777765

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.40  E-value=0.11  Score=48.30  Aligned_cols=198  Identities=13%  Similarity=0.217  Sum_probs=111.1

Q ss_pred             eeccCCCCEEEEEeCCCCCE-EEEeeCCCcEEEEECCCCceeEEeeecc-cCeEEEecCCCceEEEEe-CCCeEEEEEcC
Q 008496          310 TLSKHKGPIFSLKWNKKGDY-LLTGSCDKTAIVWDVKTEEWKQQFEFHS-GPTLDVDWRNNVSFATSS-TDNMIYVCKIG  386 (563)
Q Consensus       310 ~~~~h~~~V~~l~~~~~~~~-l~s~s~D~~v~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~d~~i~~~~~~  386 (563)
                      .+.+-...+.+|.|+|+.+. +++....+.|...+. .++.++.+.... +..-.+.+..+..|+... .++.++++++.
T Consensus        16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~   94 (248)
T PF06977_consen   16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID   94 (248)
T ss_dssp             E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred             ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence            45555667999999998665 555666778877886 477777776654 456677788888887766 47888888874


Q ss_pred             CCc---c---eeeec-----CCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCC---Ccee--eee------cccCCCEE
Q 008496          387 ENR---P---IKTFA-----GHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQ---DKYV--HDL------REHSKEIY  444 (563)
Q Consensus       387 ~~~---~---~~~~~-----~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~---~~~~--~~~------~~~~~~i~  444 (563)
                      ...   .   +..+.     .++..+-.++|+|.++.|+.+-+..-.+||.++.   ...+  ...      ......+.
T Consensus        95 ~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S  174 (248)
T PF06977_consen   95 DDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLS  174 (248)
T ss_dssp             ---TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---
T ss_pred             ccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecccc
Confidence            321   1   11121     2445688999999877777777776677776543   1111  111      12334567


Q ss_pred             EEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEe--cC--CC-----CCEEEEEEcCCCCEEEEEeCCCcE
Q 008496          445 TIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSL--NG--HR-----EPVYSLAFSPTGEYLASGSLDKSM  515 (563)
Q Consensus       445 ~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~--~~--h~-----~~i~~l~~spdg~~lasgs~dg~v  515 (563)
                      ++.+.|...        .+++-......|..+| ..|+.+..+  ..  |.     ..--.|+|.++|++.++ |.-+..
T Consensus       175 ~l~~~p~t~--------~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv-sEpNlf  244 (248)
T PF06977_consen  175 GLSYDPRTG--------HLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV-SEPNLF  244 (248)
T ss_dssp             EEEEETTTT--------EEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEE-ETTTEE
T ss_pred             ceEEcCCCC--------eEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEE-cCCceE
Confidence            788877642        3566677888999999 557765543  32  10     23578999999976665 455555


Q ss_pred             EEE
Q 008496          516 HIW  518 (563)
Q Consensus       516 ~iw  518 (563)
                      ++|
T Consensus       245 y~f  247 (248)
T PF06977_consen  245 YRF  247 (248)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            554

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.25  E-value=0.3  Score=50.00  Aligned_cols=240  Identities=16%  Similarity=0.254  Sum_probs=122.6

Q ss_pred             ceEEEEECCCCCEEEEe-eCC----CcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEE
Q 008496          217 EVCACAWSPAGSLLASG-SGD----STARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLAT  291 (563)
Q Consensus       217 ~V~~~~~sp~~~~latg-s~D----~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~s  291 (563)
                      .+..+++||++++||.+ +..    ..+++.|+.+++...         ..+...         .-..+.|.++++.|+.
T Consensus       125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~---------d~i~~~---------~~~~~~W~~d~~~~~y  186 (414)
T PF02897_consen  125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLP---------DGIENP---------KFSSVSWSDDGKGFFY  186 (414)
T ss_dssp             EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEE---------EEEEEE---------ESEEEEECTTSSEEEE
T ss_pred             EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcC---------Cccccc---------ccceEEEeCCCCEEEE
Confidence            34468899999988754 222    469999998763210         011110         1124899999988877


Q ss_pred             EeCCC-----------eEEEEEcCCce---eEeeccCCCC--EEEEEeCCCCCEEEEeeCC----CcEEEEECCCC----
Q 008496          292 GSYDG-----------QARIWSTNGDL---KCTLSKHKGP--IFSLKWNKKGDYLLTGSCD----KTAIVWDVKTE----  347 (563)
Q Consensus       292 g~~dg-----------~i~vw~~~~~~---~~~~~~h~~~--V~~l~~~~~~~~l~s~s~D----~~v~iwd~~~~----  347 (563)
                      ...+.           .|+.|......   ...+.....+  ...+..++++++|+..+..    ..+.+-|+..+    
T Consensus       187 ~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~  266 (414)
T PF02897_consen  187 TRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPD  266 (414)
T ss_dssp             EECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS
T ss_pred             EEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCc
Confidence            66543           36777765432   2344443333  5688899999997654332    23666677664    


Q ss_pred             -ceeEEeeecccCeEEEecCCCceEEEEe---CCCeEEEEEcCCCcc---eeeecCCCcc--eeEEEECCCCC-EEEEEe
Q 008496          348 -EWKQQFEFHSGPTLDVDWRNNVSFATSS---TDNMIYVCKIGENRP---IKTFAGHQGE--VNCVKWDPTGS-LLASCS  417 (563)
Q Consensus       348 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~d~~i~~~~~~~~~~---~~~~~~h~~~--i~~~~~~~~~~-~las~s  417 (563)
                       .+........+....+...++..++.+.   ..+.|...++.....   ...+..|...  +..+..  .+. ++++-.
T Consensus       267 ~~~~~l~~~~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~--~~~~Lvl~~~  344 (414)
T PF02897_consen  267 AKPKLLSPREDGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSL--FKDYLVLSYR  344 (414)
T ss_dssp             -SEEEEEESSSS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEE--ETTEEEEEEE
T ss_pred             CCcEEEeCCCCceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEE--ECCEEEEEEE
Confidence             3333333233333444444444444432   335666677765542   2244455553  444444  344 444555


Q ss_pred             CCC--cEEEEeCCCCceeeeecc-cCCCEEEEEEccCCCCCCCCCCcEEEEEEeCC--CeEEEEeCCCCeE
Q 008496          418 DDV--TAKIWNMKQDKYVHDLRE-HSKEIYTIRWSPTGSGTNNPNQQLILASASFD--STVKLWDVELGKL  483 (563)
Q Consensus       418 ~dg--~i~iwd~~~~~~~~~~~~-~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~d--g~i~iwd~~~~~~  483 (563)
                      .++  .|+++++..+.....+.. -.+.|..+...+.+       ..+.+...|.-  +++.-||+.+++.
T Consensus       345 ~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~-------~~~~~~~ss~~~P~~~y~~d~~t~~~  408 (414)
T PF02897_consen  345 ENGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDS-------DELRFSYSSFTTPPTVYRYDLATGEL  408 (414)
T ss_dssp             ETTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT--------SEEEEEEEETTEEEEEEEEETTTTCE
T ss_pred             ECCccEEEEEECCCCcEEeeecCCcceEEeccCCCCCC-------CEEEEEEeCCCCCCEEEEEECCCCCE
Confidence            555  467888873333332222 22334443322222       22344444442  4667777777664

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.24  E-value=0.22  Score=48.20  Aligned_cols=146  Identities=12%  Similarity=0.156  Sum_probs=89.9

Q ss_pred             cceeEEEECCCCCEEEEEeC-----C----CcEEEEeCC-CCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEe
Q 008496          399 GEVNCVKWDPTGSLLASCSD-----D----VTAKIWNMK-QDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASAS  468 (563)
Q Consensus       399 ~~i~~~~~~~~~~~las~s~-----d----g~i~iwd~~-~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s  468 (563)
                      ...+.+...|+|.+.++...     .    ..-.+|.+. .+..+..+..+-..-..|+|+|+++        .+.++=+
T Consensus       111 ~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~--------tly~aDT  182 (307)
T COG3386         111 NRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGK--------TLYVADT  182 (307)
T ss_pred             CCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCC--------EEEEEeC
Confidence            34667888899887665433     0    112455555 3444444444444456799999885        2555556


Q ss_pred             CCCeEEEEeCCC--C----eE-EEEecCCCCCEEEEEEcCCCCEEEEEeCCC-cEEEEecCCCeeEEEEecC-CCEEEEE
Q 008496          469 FDSTVKLWDVEL--G----KL-LYSLNGHREPVYSLAFSPTGEYLASGSLDK-SMHIWSLKEGKIVKTYTGN-GGIFEVC  539 (563)
Q Consensus       469 ~dg~i~iwd~~~--~----~~-~~~~~~h~~~i~~l~~spdg~~lasgs~dg-~v~iw~~~~~~~~~~~~~~-~~i~~l~  539 (563)
                      ..+.|.-|++..  +    +. ...+....+.--.++...+|.+.+++-.+| .|.+|+.. |+++..+... ..+..++
T Consensus       183 ~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~  261 (307)
T COG3386         183 PANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPA  261 (307)
T ss_pred             CCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccce
Confidence            667788777652  1    11 122222334445677778888876555554 89999988 9988888765 5667777


Q ss_pred             Ec-CCCCEEEEEECC
Q 008496          540 WN-KEGDKIAACFAN  553 (563)
Q Consensus       540 w~-~~g~~la~~~~~  553 (563)
                      |- ++.+.|.+.+..
T Consensus       262 FgG~~~~~L~iTs~~  276 (307)
T COG3386         262 FGGPDLNTLYITSAR  276 (307)
T ss_pred             EeCCCcCEEEEEecC
Confidence            74 355666655443

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.22  E-value=0.23  Score=48.03  Aligned_cols=218  Identities=14%  Similarity=0.126  Sum_probs=107.5

Q ss_pred             ECCCCC-EEEEEeCCCeEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecc-c-
Q 008496          282 WNGEGT-LLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHS-G-  358 (563)
Q Consensus       282 ~s~~g~-~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~-~-  358 (563)
                      |.++.. ++.+--..+.|.-|+........+. +.+.+.++..-..+..|+++.  .-+.++++.++..+..+.... + 
T Consensus        32 w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~-~p~~~~~~~~~d~~g~Lv~~~--~g~~~~~~~~~~~~t~~~~~~~~~  108 (307)
T COG3386          32 WDPDRGALLWVDILGGRIHRLDPETGKKRVFP-SPGGFSSGALIDAGGRLIACE--HGVRLLDPDTGGKITLLAEPEDGL  108 (307)
T ss_pred             CcCCCCEEEEEeCCCCeEEEecCCcCceEEEE-CCCCcccceeecCCCeEEEEc--cccEEEeccCCceeEEeccccCCC
Confidence            556555 4455556677888887644333333 223334444444444555553  345666665554422221111 1 


Q ss_pred             ---CeEEEecCCCceEEEEeCC----------CeEEEEEcC-CCcceeeecCCCcceeEEEECCCCCEEEEEeC-CCcEE
Q 008496          359 ---PTLDVDWRNNVSFATSSTD----------NMIYVCKIG-ENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD-DVTAK  423 (563)
Q Consensus       359 ---~~~~~~~~~~~~~~~~~~d----------~~i~~~~~~-~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~-dg~i~  423 (563)
                         ...+.....+..|..+...          ..-.+|.+. .+..++.+..|-..-+.|+||||++.|..+-. .+.|.
T Consensus       109 ~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~  188 (307)
T COG3386         109 PLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIH  188 (307)
T ss_pred             CcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEE
Confidence               1122222222333322222          011344444 34444555555556789999999987665544 56777


Q ss_pred             EEeCCCCceeeeecccCCCEEEEEE-----ccCCCCCCCCCCcEEEEEEeCCC-eEEEEeCCCCeEEEEecCCCCCEEEE
Q 008496          424 IWNMKQDKYVHDLREHSKEIYTIRW-----SPTGSGTNNPNQQLILASASFDS-TVKLWDVELGKLLYSLNGHREPVYSL  497 (563)
Q Consensus       424 iwd~~~~~~~~~~~~~~~~i~~~~~-----~p~~~~~~~~~~~~~l~s~s~dg-~i~iwd~~~~~~~~~~~~h~~~i~~l  497 (563)
                      -|++....    ...... ...+.+     .|+|.. ...+..++. ++-.+| .|..|+.. |+++..+.-....++++
T Consensus       189 r~~~d~~~----g~~~~~-~~~~~~~~~~G~PDG~~-vDadG~lw~-~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~  260 (307)
T COG3386         189 RYDLDPAT----GPIGGR-RGFVDFDEEPGLPDGMA-VDADGNLWV-AAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNP  260 (307)
T ss_pred             EEecCccc----CccCCc-ceEEEccCCCCCCCceE-EeCCCCEEE-ecccCCceEEEECCC-CcEEEEEECCCCCCccc
Confidence            77665200    000111 111111     233321 112233333 333343 89999988 88888877665667888


Q ss_pred             EE-cCCCCEEEEEe
Q 008496          498 AF-SPTGEYLASGS  510 (563)
Q Consensus       498 ~~-spdg~~lasgs  510 (563)
                      +| .|+.+.|...+
T Consensus       261 ~FgG~~~~~L~iTs  274 (307)
T COG3386         261 AFGGPDLNTLYITS  274 (307)
T ss_pred             eEeCCCcCEEEEEe
Confidence            88 55655554433

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.19  E-value=0.32  Score=49.09  Aligned_cols=217  Identities=18%  Similarity=0.152  Sum_probs=138.3

Q ss_pred             EEEEeCCCCCEEE-EeeCCCcEEEEECCCCceeEEeeeccc-CeEEEecCCCceEEEEe--CCCeEEEEEcCCCcceeee
Q 008496          319 FSLKWNKKGDYLL-TGSCDKTAIVWDVKTEEWKQQFEFHSG-PTLDVDWRNNVSFATSS--TDNMIYVCKIGENRPIKTF  394 (563)
Q Consensus       319 ~~l~~~~~~~~l~-s~s~D~~v~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~d~~i~~~~~~~~~~~~~~  394 (563)
                      .++..++.++.++ +...++.|.+.|..+............ ..+.+++.....+++-.  .++.+.+.+..+.+.+...
T Consensus        77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~  156 (381)
T COG3391          77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATI  156 (381)
T ss_pred             cceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEE
Confidence            4667788887554 444568999999877766665544332 23444444555566655  4688888888888777664


Q ss_pred             cCCCcceeEEEECCCCCEEEEE-eCCCcEEEEeCCCCceee-e---ecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeC
Q 008496          395 AGHQGEVNCVKWDPTGSLLASC-SDDVTAKIWNMKQDKYVH-D---LREHSKEIYTIRWSPTGSGTNNPNQQLILASASF  469 (563)
Q Consensus       395 ~~h~~~i~~~~~~~~~~~las~-s~dg~i~iwd~~~~~~~~-~---~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~  469 (563)
                      ..-..+ ..++++|+|+.+..+ ..++.|.+.|........ .   ...-...-..+.++|++.        .+.++...
T Consensus       157 ~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~--------~~yV~~~~  227 (381)
T COG3391         157 PVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGN--------RVYVANDG  227 (381)
T ss_pred             ecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCC--------EEEEEecc
Confidence            433334 789999999965544 478899999976655442 1   011112235567777764        23333333


Q ss_pred             --CCeEEEEeCCCCeEEEE-ecCCCCCEEEEEEcCCCCEEEEEeC-CCcEEEEecCCCeeEEEEecCC----CEEEEEEc
Q 008496          470 --DSTVKLWDVELGKLLYS-LNGHREPVYSLAFSPTGEYLASGSL-DKSMHIWSLKEGKIVKTYTGNG----GIFEVCWN  541 (563)
Q Consensus       470 --dg~i~iwd~~~~~~~~~-~~~h~~~i~~l~~spdg~~lasgs~-dg~v~iw~~~~~~~~~~~~~~~----~i~~l~w~  541 (563)
                        ++.+...|..++..... ...-...-..+.++|+|.++.+... .+.|.+-|..+..+........    .+..+++.
T Consensus       228 ~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~  307 (381)
T COG3391         228 SGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAIS  307 (381)
T ss_pred             CCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecccccccccceeccce
Confidence              37899999988777654 2211113456899999999887744 4889999999888877764322    25555555


Q ss_pred             CCC
Q 008496          542 KEG  544 (563)
Q Consensus       542 ~~g  544 (563)
                      +..
T Consensus       308 ~~~  310 (381)
T COG3391         308 PLY  310 (381)
T ss_pred             eec
Confidence            543

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.19  E-value=0.01  Score=63.82  Aligned_cols=135  Identities=13%  Similarity=0.177  Sum_probs=91.3

Q ss_pred             eCCCeEEEEEcCCCcceeeecCCCcc-eeEEEECC-----CCCEEEEEeCCCcEEEEeCCCCc--eeee-ec--ccCCCE
Q 008496          375 STDNMIYVCKIGENRPIKTFAGHQGE-VNCVKWDP-----TGSLLASCSDDVTAKIWNMKQDK--YVHD-LR--EHSKEI  443 (563)
Q Consensus       375 ~~d~~i~~~~~~~~~~~~~~~~h~~~-i~~~~~~~-----~~~~las~s~dg~i~iwd~~~~~--~~~~-~~--~~~~~i  443 (563)
                      ...+.++..|+..++.+..+..|... |..++-..     +..-...|-.+..+..||.+-..  ++.. .+  ......
T Consensus       501 ~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~F  580 (794)
T PF08553_consen  501 NNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNF  580 (794)
T ss_pred             CCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCc
Confidence            35678999999999999999877654 54443211     12234567778889999987542  2211 11  122344


Q ss_pred             EEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEec
Q 008496          444 YTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSL  520 (563)
Q Consensus       444 ~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~  520 (563)
                      .|++-..+|          .||.||.+|.||+||--..+....+.+...||..|..+.||+||++.+ +..|.+++.
T Consensus       581 s~~aTt~~G----------~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t  646 (794)
T PF08553_consen  581 SCFATTEDG----------YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDT  646 (794)
T ss_pred             eEEEecCCc----------eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence            555555554          689999999999999432233344567789999999999999988655 456777775

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=97.17  E-value=0.43  Score=50.26  Aligned_cols=158  Identities=12%  Similarity=0.045  Sum_probs=83.5

Q ss_pred             CCEEEEeeCCCcEEEEECCCCceeEEeeeccc----CeEE-EecCCCceEEEEe-----CCCeEEEEEcCCCcceeeecC
Q 008496          327 GDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSG----PTLD-VDWRNNVSFATSS-----TDNMIYVCKIGENRPIKTFAG  396 (563)
Q Consensus       327 ~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~----~~~~-~~~~~~~~~~~~~-----~d~~i~~~~~~~~~~~~~~~~  396 (563)
                      +..++.++.|+.+...|..+++.+-.+.....    .+.. -...++..++..+     .++.|+-++..+++.+-.+..
T Consensus       120 ~~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~  199 (527)
T TIGR03075       120 DGKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYT  199 (527)
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccC
Confidence            34677888999999999999987655432110    0000 0011233333322     257788878776654432211


Q ss_pred             C-------------------------------Ccce-eEEEECCCCCEEEEEeCC-----C-----------cEEEEeCC
Q 008496          397 H-------------------------------QGEV-NCVKWDPTGSLLASCSDD-----V-----------TAKIWNMK  428 (563)
Q Consensus       397 h-------------------------------~~~i-~~~~~~~~~~~las~s~d-----g-----------~i~iwd~~  428 (563)
                      -                               .+.+ ..+.++|...+|..+..+     +           +|.--|++
T Consensus       200 ~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~  279 (527)
T TIGR03075       200 VPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPD  279 (527)
T ss_pred             cCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccc
Confidence            0                               0111 134677766666555422     2           34455777


Q ss_pred             CCceeeeecccCCCEEEEEE--ccCCCC-CCCCCCcEEEEEEeCCCeEEEEeCCCCeEE
Q 008496          429 QDKYVHDLREHSKEIYTIRW--SPTGSG-TNNPNQQLILASASFDSTVKLWDVELGKLL  484 (563)
Q Consensus       429 ~~~~~~~~~~~~~~i~~~~~--~p~~~~-~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~  484 (563)
                      +++..-.++.....+.....  .|.-.. ..+.....+++.+..+|.+.+.|.++|+.+
T Consensus       280 TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i  338 (527)
T TIGR03075       280 TGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL  338 (527)
T ss_pred             cCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence            77766555432222221110  000000 000011247889999999999999999886

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.17  E-value=0.017  Score=62.18  Aligned_cols=144  Identities=19%  Similarity=0.227  Sum_probs=93.7

Q ss_pred             CEEEE-EeCCCcEEEEeCCCCceeeeecccCCC-EEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCe--EEEE
Q 008496          411 SLLAS-CSDDVTAKIWNMKQDKYVHDLREHSKE-IYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK--LLYS  486 (563)
Q Consensus       411 ~~las-~s~dg~i~iwd~~~~~~~~~~~~~~~~-i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~--~~~~  486 (563)
                      ++|+. ......+.-.|+..++.+.....|... |..  +.|+.......+.+.  ..|-.+..+..||.|...  ++..
T Consensus       494 ~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~--~~p~~K~aqlt~e~t--flGls~n~lfriDpR~~~~k~v~~  569 (794)
T PF08553_consen  494 NMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVD--IAPDSKFAQLTNEQT--FLGLSDNSLFRIDPRLSGNKLVDS  569 (794)
T ss_pred             ceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeE--ecccccccccCCCce--EEEECCCceEEeccCCCCCceeec
Confidence            44433 345678888899999999998877643 444  446543322222332  346678899999998532  3321


Q ss_pred             -ec--CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEE-Eec-CCCEEEEEEcCCCCEEEEEECCCeEEEEEe
Q 008496          487 -LN--GHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKT-YTG-NGGIFEVCWNKEGDKIAACFANHTVCVLDF  561 (563)
Q Consensus       487 -~~--~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~-~~~-~~~i~~l~w~~~g~~la~~~~~~~v~v~~~  561 (563)
                       ..  .......|++-+.+| +||+||.+|.|++||. .|+.-++ +++ ..+|.+|+-+.||++|.+.+. ..+.+++.
T Consensus       570 ~~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~-tyLlLi~t  646 (794)
T PF08553_consen  570 QSKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDVTADGKWILATCK-TYLLLIDT  646 (794)
T ss_pred             cccccccCCCceEEEecCCc-eEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEecCCCcEEEEeec-ceEEEEEE
Confidence             11  123456777777776 6899999999999994 3433233 333 567999999999998776644 36667664

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.12  E-value=0.013  Score=58.38  Aligned_cols=138  Identities=10%  Similarity=0.207  Sum_probs=90.2

Q ss_pred             eEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCE-------EEEEeCCCcEEEEeCCCCce--eeeecccC
Q 008496          370 SFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSL-------LASCSDDVTAKIWNMKQDKY--VHDLREHS  440 (563)
Q Consensus       370 ~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~-------las~s~dg~i~iwd~~~~~~--~~~~~~~~  440 (563)
                      .+..+.....++-.|+..++.+..+.-|.. |+-+.+.|+.+.       -+.|-.|..|.-||++-...  +.....|.
T Consensus       348 il~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kq  426 (644)
T KOG2395|consen  348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQ  426 (644)
T ss_pred             EeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccc
Confidence            445555667788889988888888877665 777888887642       23455677788899873322  11111111


Q ss_pred             ----CCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeE-EEEecCCCCCEEEEEEcCCCCEEEEEeCCCcE
Q 008496          441 ----KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKL-LYSLNGHREPVYSLAFSPTGEYLASGSLDKSM  515 (563)
Q Consensus       441 ----~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~-~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v  515 (563)
                          ....|++-..+|          +++.||.+|.||+||- .++. ...+.+...+|..|..+.||++|+..+ +..+
T Consensus       427 y~~k~nFsc~aTT~sG----------~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyL  494 (644)
T KOG2395|consen  427 YSTKNNFSCFATTESG----------YIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYL  494 (644)
T ss_pred             cccccccceeeecCCc----------eEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEE
Confidence                111222222222          6899999999999997 4433 345677888999999999999987544 4556


Q ss_pred             EEEec
Q 008496          516 HIWSL  520 (563)
Q Consensus       516 ~iw~~  520 (563)
                      .+-++
T Consensus       495 lLi~t  499 (644)
T KOG2395|consen  495 LLIDT  499 (644)
T ss_pred             EEEEE
Confidence            66554

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.10  E-value=0.018  Score=62.18  Aligned_cols=85  Identities=24%  Similarity=0.396  Sum_probs=65.1

Q ss_pred             CCEEEEEeCCCeEEEEEcCCceeE--eeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCe---
Q 008496          286 GTLLATGSYDGQARIWSTNGDLKC--TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPT---  360 (563)
Q Consensus       286 g~~l~sg~~dg~i~vw~~~~~~~~--~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~---  360 (563)
                      +..++.|+..|.+...|..+.+..  .-..-.++|++++|+.+|..++.|-.+|.|.+||+.+++..+.+..+..|.   
T Consensus        99 ~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~v  178 (1206)
T KOG2079|consen   99 VVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGV  178 (1206)
T ss_pred             eeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceE
Confidence            456888888888888887776542  223346899999999999999999999999999999988888777766553   


Q ss_pred             EEEecCCCce
Q 008496          361 LDVDWRNNVS  370 (563)
Q Consensus       361 ~~~~~~~~~~  370 (563)
                      +.+.|..+..
T Consensus       179 i~v~~t~~nS  188 (1206)
T KOG2079|consen  179 IFVGRTSQNS  188 (1206)
T ss_pred             EEEEEeCCCc
Confidence            3344444444

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=97.09  E-value=0.0021  Score=57.05  Aligned_cols=106  Identities=17%  Similarity=0.245  Sum_probs=73.0

Q ss_pred             CCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecC
Q 008496          410 GSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNG  489 (563)
Q Consensus       410 ~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~  489 (563)
                      +.-++.|+.+|.|.+|..+.......+.........+ --|.+.      ...+..+++.||.||.|++..++.+.....
T Consensus        70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~-~Ip~~~------~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~  142 (238)
T KOG2444|consen   70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDL-GIPNGR------DSSLGCVGAQDGRIRACNIKPNKVLGYVGQ  142 (238)
T ss_pred             CceEEeecccceEEEecCCccchHHHhhhccccccee-cccccc------ccceeEEeccCCceeeeccccCceeeeecc
Confidence            4557899999999999876322211111111111111 113332      123778899999999999999998888888


Q ss_pred             CC-CCEEEEEEcCCCCEEEEE--eCCCcEEEEecCC
Q 008496          490 HR-EPVYSLAFSPTGEYLASG--SLDKSMHIWSLKE  522 (563)
Q Consensus       490 h~-~~i~~l~~spdg~~lasg--s~dg~v~iw~~~~  522 (563)
                      |. .++..+..+..+++|+++  |.|..++.|++..
T Consensus       143 h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  143 HNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             ccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence            87 677777777788888888  8888999998864

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.07  E-value=0.053  Score=57.47  Aligned_cols=182  Identities=13%  Similarity=0.183  Sum_probs=95.2

Q ss_pred             CceEEEEECCCCCEEEEee------CCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEE
Q 008496          216 SEVCACAWSPAGSLLASGS------GDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLL  289 (563)
Q Consensus       216 ~~V~~~~~sp~~~~latgs------~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l  289 (563)
                      ..+...+.||+|+.+|...      .|..-.||-...+...        .  .+  ..      ....+.-.|+|+|..|
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~--------~--~l--t~------g~~~t~PsWspDG~~l  411 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVA--------V--QV--LE------GHSLTRPSWSLDADAV  411 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcc--------e--ee--ec------CCCCCCceECCCCCce
Confidence            3567889999998776654      3555566654321100        0  00  00      1226677899998887


Q ss_pred             EEEeCC-CeEEEE-----------EcCCceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEE---EECCCCceeE---
Q 008496          290 ATGSYD-GQARIW-----------STNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIV---WDVKTEEWKQ---  351 (563)
Q Consensus       290 ~sg~~d-g~i~vw-----------~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~i---wd~~~~~~~~---  351 (563)
                      ++.... ..+++.           ..++.....  ...+.|..++|+|+|.+++... ++.|.+   -....+...-   
T Consensus       412 w~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~  488 (591)
T PRK13616        412 WVVVDGNTVVRVIRDPATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNP  488 (591)
T ss_pred             EEEecCcceEEEeccCCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeeccc
Confidence            776532 223333           332221111  3356799999999999987665 466666   3333343111   


Q ss_pred             -Eeeec-ccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeee-cC--CCcceeEEEECCCCCEEEEEeCCC
Q 008496          352 -QFEFH-SGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTF-AG--HQGEVNCVKWDPTGSLLASCSDDV  420 (563)
Q Consensus       352 -~~~~~-~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~-~~--h~~~i~~~~~~~~~~~las~s~dg  420 (563)
                       .+... ...+.++.|..+..++....+....+|.+.-....... .+  ....+..|+-+++ . +.....++
T Consensus       489 ~~l~~~l~~~~~~l~W~~~~~L~V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~-~-iyv~~~~g  560 (591)
T PRK13616        489 REVGPGLGDTAVSLDWRTGDSLVVGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS-T-VYVTDARA  560 (591)
T ss_pred             EEeecccCCccccceEecCCEEEEEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc-e-EEEEcCCc
Confidence             11111 22357789998887766554443333433222211111 22  2345666666652 3 33344444

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.05  E-value=0.066  Score=42.35  Aligned_cols=90  Identities=22%  Similarity=0.320  Sum_probs=61.8

Q ss_pred             CEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCC
Q 008496          411 SLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGH  490 (563)
Q Consensus       411 ~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h  490 (563)
                      +.|+.||+|..||+|+-  ...+.++... ..++++.-...+          .++.+..+|+|-+|+-  ...++..+..
T Consensus        16 ~eLlvGs~D~~IRvf~~--~e~~~Ei~e~-~~v~~L~~~~~~----------~F~Y~l~NGTVGvY~~--~~RlWRiKSK   80 (111)
T PF14783_consen   16 NELLVGSDDFEIRVFKG--DEIVAEITET-DKVTSLCSLGGG----------RFAYALANGTVGVYDR--SQRLWRIKSK   80 (111)
T ss_pred             ceEEEecCCcEEEEEeC--CcEEEEEecc-cceEEEEEcCCC----------EEEEEecCCEEEEEeC--cceeeeeccC
Confidence            46889999999999974  3556666543 457777665543          4788999999999975  4556666654


Q ss_pred             CCCEEEEE-EcCCC---CEEEEEeCCCcEE
Q 008496          491 REPVYSLA-FSPTG---EYLASGSLDKSMH  516 (563)
Q Consensus       491 ~~~i~~l~-~spdg---~~lasgs~dg~v~  516 (563)
                      .. +.+++ |..+|   .-|++|=.+|.|-
T Consensus        81 ~~-~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   81 NQ-VTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             CC-eEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            44 45554 44443   3578888888764

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=96.97  E-value=0.14  Score=47.64  Aligned_cols=194  Identities=15%  Similarity=0.201  Sum_probs=103.0

Q ss_pred             EecCCCCceEEEEECCCCC-EEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCE
Q 008496          210 ILEGHTSEVCACAWSPAGS-LLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTL  288 (563)
Q Consensus       210 ~l~~h~~~V~~~~~sp~~~-~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~  288 (563)
                      .+.+-...+..++|+|+.. +++.....+.|...+.. |..             ++...-   ....+.-.+++..++.+
T Consensus        16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~v-------------lr~i~l---~g~~D~EgI~y~g~~~~   78 (248)
T PF06977_consen   16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKV-------------LRRIPL---DGFGDYEGITYLGNGRY   78 (248)
T ss_dssp             E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---E-------------EEEEE----SS-SSEEEEEE-STTEE
T ss_pred             ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCE-------------EEEEeC---CCCCCceeEEEECCCEE
Confidence            3445556799999999855 55556667777666643 221             121111   11356788899888887


Q ss_pred             EEEEeCCCeEEEEEcCC--c---e--eE--ee---ccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCC---CceeEEe
Q 008496          289 LATGSYDGQARIWSTNG--D---L--KC--TL---SKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKT---EEWKQQF  353 (563)
Q Consensus       289 l~sg~~dg~i~vw~~~~--~---~--~~--~~---~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~---~~~~~~~  353 (563)
                      +++--.++.+.+.+...  .   .  ..  .+   ..+...+-+|+|.|.++.|+.+-...-..++.+..   .......
T Consensus        79 vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~  158 (248)
T PF06977_consen   79 VLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVS  158 (248)
T ss_dssp             EEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEE
T ss_pred             EEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeec
Confidence            77766789898887631  1   1  01  11   13455689999999998888887666666666543   1111110


Q ss_pred             e----------ecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeec--C-CC------cceeEEEECCCCCEEE
Q 008496          354 E----------FHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFA--G-HQ------GEVNCVKWDPTGSLLA  414 (563)
Q Consensus       354 ~----------~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~--~-h~------~~i~~~~~~~~~~~la  414 (563)
                      .          ...-+.+.++...+..++.+.....+..++ ..++++..+.  . ..      ...-.|+|.++|++.+
T Consensus       159 ~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYI  237 (248)
T PF06977_consen  159 DDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYI  237 (248)
T ss_dssp             E-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEE
T ss_pred             cccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEE
Confidence            0          011122334445566778888888888888 4445544332  1 11      1356899999997765


Q ss_pred             EEeCCCcE
Q 008496          415 SCSDDVTA  422 (563)
Q Consensus       415 s~s~dg~i  422 (563)
                      +. +-+..
T Consensus       238 vs-EpNlf  244 (248)
T PF06977_consen  238 VS-EPNLF  244 (248)
T ss_dssp             EE-TTTEE
T ss_pred             Ec-CCceE
Confidence            44 44433

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=96.96  E-value=0.8  Score=49.67  Aligned_cols=320  Identities=14%  Similarity=0.192  Sum_probs=165.2

Q ss_pred             CceEEEEECCCC---C---EEEEeeCCCcEEEEe-cCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCE
Q 008496          216 SEVCACAWSPAG---S---LLASGSGDSTARIWT-IADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTL  288 (563)
Q Consensus       216 ~~V~~~~~sp~~---~---~latgs~D~~i~iW~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~  288 (563)
                      .+|.|+.++|-|   +   ++|.|..+..+.+-. +++....           ........  .....|....+-.|..+
T Consensus       531 ~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~-----------~~~~l~~~--~iPRSIl~~~~e~d~~y  597 (1096)
T KOG1897|consen  531 YEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILI-----------THEQLSGE--IIPRSILLTTFEGDIHY  597 (1096)
T ss_pred             ceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCccee-----------eeeccCCC--ccchheeeEEeeccceE
Confidence            679999999852   2   788887665555433 2222110           00111111  12345777788888999


Q ss_pred             EEEEeCCCeEEEEEcC---CceeEee--ccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEE
Q 008496          289 LATGSYDGQARIWSTN---GDLKCTL--SKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDV  363 (563)
Q Consensus       289 l~sg~~dg~i~vw~~~---~~~~~~~--~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~  363 (563)
                      |.++..||.+..+..+   |.+...-  .--+.|+.=-.|+..+..-+-+.+|+-..+|--+..-+...+..  ..+..+
T Consensus       598 LlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv~spls~--kev~~~  675 (1096)
T KOG1897|consen  598 LLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGKLVYSPLSL--KEVNHM  675 (1096)
T ss_pred             EEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCcEEEeccch--HHhhhh
Confidence            9999999999877643   2221111  11234555556666555544555677666775433221111111  011112


Q ss_pred             ec-CCC--ceEEEEeCCCeEEEEEcCCCc--ceeeecCCCcceeEEEECCCCCEEEEEeCCC--------------cEEE
Q 008496          364 DW-RNN--VSFATSSTDNMIYVCKIGENR--PIKTFAGHQGEVNCVKWDPTGSLLASCSDDV--------------TAKI  424 (563)
Q Consensus       364 ~~-~~~--~~~~~~~~d~~i~~~~~~~~~--~~~~~~~h~~~i~~~~~~~~~~~las~s~dg--------------~i~i  424 (563)
                      +. .++  ...+.....+.+.+..++.-+  .+++..- ......+++.+...++++.+.-.              .+++
T Consensus       676 c~f~s~a~~d~l~~~~~~~l~i~tid~iqkl~irtvpl-~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~v  754 (1096)
T KOG1897|consen  676 CPFNSDAYPDSLASANGGALTIGTIDEIQKLHIRTVPL-GESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRV  754 (1096)
T ss_pred             cccccccCCceEEEecCCceEEEEecchhhcceeeecC-CCChhheEecccceEEEEEecccccchhhcCCcceEEEEEE
Confidence            21 111  122333444556655554322  2333222 22345666766555555544321              2566


Q ss_pred             EeCCCCceeeeec--cc--CCCEEEEEEccCCCCCCCCCCcEEEEEEe----------CCCeEEEEeCCCCeEEEEecC-
Q 008496          425 WNMKQDKYVHDLR--EH--SKEIYTIRWSPTGSGTNNPNQQLILASAS----------FDSTVKLWDVELGKLLYSLNG-  489 (563)
Q Consensus       425 wd~~~~~~~~~~~--~~--~~~i~~~~~~p~~~~~~~~~~~~~l~s~s----------~dg~i~iwd~~~~~~~~~~~~-  489 (563)
                      +|-++-+.++...  ..  ...|.++.|..+.      +  .+++.|.          ..|.|.++....++.+..+.. 
T Consensus       755 lD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~------~--t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~  826 (1096)
T KOG1897|consen  755 LDQNTFEVLSSHEFERNETALSIISCKFTDDP------N--TYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAET  826 (1096)
T ss_pred             ecCCceeEEeeccccccceeeeeeeeeecCCC------c--eEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeee
Confidence            6666554433211  10  1123333454331      1  2344432          135566665544222222211 


Q ss_pred             -CCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEE-EecCCCEEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496          490 -HREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKT-YTGNGGIFEVCWNKEGDKIAACFANHTVCVLDFR  562 (563)
Q Consensus       490 -h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~-~~~~~~i~~l~w~~~g~~la~~~~~~~v~v~~~~  562 (563)
                       -.+.++++.- -+|++||.  -...|++|+..+++.++. ......+..+.....|+.+|+|..-+++.+.-+|
T Consensus       827 ~v~Gav~aL~~-fngkllA~--In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~  898 (1096)
T KOG1897|consen  827 VVKGAVYALVE-FNGKLLAG--INQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYK  898 (1096)
T ss_pred             eeccceeehhh-hCCeEEEe--cCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEe
Confidence             2345555532 26777764  556799999988855543 2334567888889999999999888888887665

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=96.92  E-value=0.11  Score=52.10  Aligned_cols=46  Identities=20%  Similarity=0.327  Sum_probs=38.0

Q ss_pred             EecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEec
Q 008496          486 SLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTG  531 (563)
Q Consensus       486 ~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~  531 (563)
                      .+......+.+|+.+|++++.|+...=|+|.++|+.++.+++.+++
T Consensus       302 ~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKG  347 (415)
T PF14655_consen  302 GLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKG  347 (415)
T ss_pred             eeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhcc
Confidence            3444455688999999999988877779999999999998888776

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=96.88  E-value=0.47  Score=45.78  Aligned_cols=255  Identities=15%  Similarity=0.145  Sum_probs=137.4

Q ss_pred             CeEEEEEcCC-ceeEeeccCCCCEEEEEeCCCCCEEEEee----------CCCcEEEEECCCCceeEEeeecccCeEEEe
Q 008496          296 GQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGS----------CDKTAIVWDVKTEEWKQQFEFHSGPTLDVD  364 (563)
Q Consensus       296 g~i~vw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s----------~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~  364 (563)
                      +.+.|+|.+. +.+-.+..  +-.-.+..+|+++.+++++          ..-.|.+||..+-.....+.....+-.. .
T Consensus        17 ~rv~viD~d~~k~lGmi~~--g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~-~   93 (342)
T PF06433_consen   17 SRVYVIDADSGKLLGMIDT--GFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQ-V   93 (342)
T ss_dssp             EEEEEEETTTTEEEEEEEE--ESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B---B
T ss_pred             ceEEEEECCCCcEEEEeec--ccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchhe-e
Confidence            3567777543 33333321  1122345689999888754          2335899999998777766554431111 1


Q ss_pred             cCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCccee-------EEEECCCC-CEEEEEeCCCcEEEEeCC-CCceeee
Q 008496          365 WRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVN-------CVKWDPTG-SLLASCSDDVTAKIWNMK-QDKYVHD  435 (563)
Q Consensus       365 ~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~-------~~~~~~~~-~~las~s~dg~i~iwd~~-~~~~~~~  435 (563)
                      ......+..+..+..+++++......+....-....+.       |.-.-|.+ .-|.+-+.||++--..+. .++....
T Consensus        94 ~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~  173 (342)
T PF06433_consen   94 VPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQK  173 (342)
T ss_dssp             S--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEE
T ss_pred             cccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEEEEEecCCCceEEEecCCceEEEEECCCCCEeEe
Confidence            11233455556666777777765554444433322221       22222332 447778889988887776 3433211


Q ss_pred             ecccCCCEEEEEEccCCCCCC-CC----CCcEEEEEEeCCCeEEEEeCCCCeEEE--EecC--------C--CCCEEEEE
Q 008496          436 LREHSKEIYTIRWSPTGSGTN-NP----NQQLILASASFDSTVKLWDVELGKLLY--SLNG--------H--REPVYSLA  498 (563)
Q Consensus       436 ~~~~~~~i~~~~~~p~~~~~~-~~----~~~~~l~s~s~dg~i~iwd~~~~~~~~--~~~~--------h--~~~i~~l~  498 (563)
                         +     +-.|.++..... ++    ... .++--+.+|.|+--|+.......  .+.-        .  .+.-.-++
T Consensus       174 ---~-----t~~F~~~~dp~f~~~~~~~~~~-~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A  244 (342)
T PF06433_consen  174 ---S-----TKVFDPDDDPLFEHPAYSRDGG-RLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIA  244 (342)
T ss_dssp             ---E-----EEESSTTTS-B-S--EEETTTT-EEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EE
T ss_pred             ---e-----ccccCCCCcccccccceECCCC-eEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeee
Confidence               1     112333221111 10    111 12225688888888876544321  1110        0  01123477


Q ss_pred             EcCCCCEEEEE---eCCC-------cEEEEecCCCeeEEEEecCCCEEEEEEcCCCC-EEEE-EECCCeEEEEEee
Q 008496          499 FSPTGEYLASG---SLDK-------SMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGD-KIAA-CFANHTVCVLDFR  562 (563)
Q Consensus       499 ~spdg~~lasg---s~dg-------~v~iw~~~~~~~~~~~~~~~~i~~l~w~~~g~-~la~-~~~~~~v~v~~~~  562 (563)
                      +++....|.+-   +.++       .|.++|+.+++.+..+.....+.+++.+.|.+ +|.+ ...++.+.|+|.+
T Consensus       245 ~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~  320 (342)
T PF06433_consen  245 YHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAA  320 (342)
T ss_dssp             EETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEETT
T ss_pred             eccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEeCc
Confidence            87755444331   1222       58999999999999998777788999999988 4433 3457899999864

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PRK13684 Ycf48-like protein; Provisional

Probab=96.83  E-value=0.59  Score=46.15  Aligned_cols=148  Identities=15%  Similarity=0.192  Sum_probs=80.8

Q ss_pred             CcceeEEEECCCCCEEEEEeCCCcEE-EEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEE
Q 008496          398 QGEVNCVKWDPTGSLLASCSDDVTAK-IWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLW  476 (563)
Q Consensus       398 ~~~i~~~~~~~~~~~las~s~dg~i~-iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iw  476 (563)
                      .+.+.++.+.|++.+++++. .|.+. .++-...........-...++++.+.|++.         +++. +..|.+++=
T Consensus       172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~---------~~~v-g~~G~~~~~  240 (334)
T PRK13684        172 AGVVRNLRRSPDGKYVAVSS-RGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGN---------LWML-ARGGQIRFN  240 (334)
T ss_pred             cceEEEEEECCCCeEEEEeC-CceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCC---------EEEE-ecCCEEEEc
Confidence            45688899999987776654 44443 232221112111223345678888888764         3333 455766542


Q ss_pred             eCCCCeEEEEecC----CCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEe----cCCCEEEEEEcCCCCEEE
Q 008496          477 DVELGKLLYSLNG----HREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYT----GNGGIFEVCWNKEGDKIA  548 (563)
Q Consensus       477 d~~~~~~~~~~~~----h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~----~~~~i~~l~w~~~g~~la  548 (563)
                      ....|..-.....    -...++++.|.|++..+++| .+|.|. .....|+--....    .....+.+.|..+++.+|
T Consensus       241 s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (334)
T PRK13684        241 DPDDLESWSKPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV  318 (334)
T ss_pred             cCCCCCccccccCCccccccceeeEEEcCCCCEEEEc-CCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE
Confidence            3333332111111    12357889999988866654 566553 4444444222221    112477888888887777


Q ss_pred             EEECCCeEEEE
Q 008496          549 ACFANHTVCVL  559 (563)
Q Consensus       549 ~~~~~~~v~v~  559 (563)
                      +| ..|.|..+
T Consensus       319 ~G-~~G~il~~  328 (334)
T PRK13684        319 LG-QRGVLLRY  328 (334)
T ss_pred             EC-CCceEEEe
Confidence            76 55665444

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=96.81  E-value=0.15  Score=48.19  Aligned_cols=144  Identities=15%  Similarity=0.177  Sum_probs=84.1

Q ss_pred             ceeEEEECCCCCEEEEEe---CCCcEEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEE
Q 008496          400 EVNCVKWDPTGSLLASCS---DDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLW  476 (563)
Q Consensus       400 ~i~~~~~~~~~~~las~s---~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iw  476 (563)
                      .+.+.+++++++.+|...   ....+.++...  .....+. ....+..-.|++++.         +.+....+...+++
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~-~g~~l~~PS~d~~g~---------~W~v~~~~~~~~~~   92 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVL-TGGSLTRPSWDPDGW---------VWTVDDGSGGVRVV   92 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCC--Ccceeec-cCCccccccccCCCC---------EEEEEcCCCceEEE
Confidence            678899999999887665   23344555433  2222221 223566777877753         34444455556666


Q ss_pred             e-CCCCeEE-EEecC--CCCCEEEEEEcCCCCEEEEEe---CCCcEEEEecC---CC---ee---EEEE-ecCCCEEEEE
Q 008496          477 D-VELGKLL-YSLNG--HREPVYSLAFSPTGEYLASGS---LDKSMHIWSLK---EG---KI---VKTY-TGNGGIFEVC  539 (563)
Q Consensus       477 d-~~~~~~~-~~~~~--h~~~i~~l~~spdg~~lasgs---~dg~v~iw~~~---~~---~~---~~~~-~~~~~i~~l~  539 (563)
                      . ...+... ..+..  -...|.++.+||||..+|.-.   .++.|.|=-+.   .+   .+   +... .....+.+++
T Consensus        93 ~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~  172 (253)
T PF10647_consen   93 RDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVA  172 (253)
T ss_pred             EecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeee
Confidence            3 3333221 12211  112899999999999887654   35777776553   23   11   1111 1134678999


Q ss_pred             EcCCCCEEEEEECCCe
Q 008496          540 WNKEGDKIAACFANHT  555 (563)
Q Consensus       540 w~~~g~~la~~~~~~~  555 (563)
                      |.+++..++.+...+.
T Consensus       173 W~~~~~L~V~~~~~~~  188 (253)
T PF10647_consen  173 WSDDSTLVVLGRSAGG  188 (253)
T ss_pred             ecCCCEEEEEeCCCCC
Confidence            9999988887755443

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.73  E-value=0.043  Score=54.83  Aligned_cols=144  Identities=19%  Similarity=0.223  Sum_probs=94.3

Q ss_pred             EEEEeCCCcEEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC-e-EEEEecCC
Q 008496          413 LASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG-K-LLYSLNGH  490 (563)
Q Consensus       413 las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~-~-~~~~~~~h  490 (563)
                      |.++..-..++--|+..++.+.+...+.. |.-+.+.|+.........+.  +.|-.|..|.=||.+.. + .+....+|
T Consensus       349 l~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~T--lvGLs~n~vfriDpRv~~~~kl~~~q~k  425 (644)
T KOG2395|consen  349 LMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQT--LVGLSDNSVFRIDPRVQGKNKLAVVQSK  425 (644)
T ss_pred             eeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhccccccc--EEeecCCceEEecccccCcceeeeeecc
Confidence            34555556777788999999988887766 77778888776443222222  23667888999998732 2 22222333


Q ss_pred             C----CCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEE-Eec-CCCEEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496          491 R----EPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKT-YTG-NGGIFEVCWNKEGDKIAACFANHTVCVLDFR  562 (563)
Q Consensus       491 ~----~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~-~~~-~~~i~~l~w~~~g~~la~~~~~~~v~v~~~~  562 (563)
                      .    ....|.+-..+| +||+||.+|.|++||. .+..-++ +++ ...|..+.-+.+|++|.+.+ +..+.+++.+
T Consensus       426 qy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t~  500 (644)
T KOG2395|consen  426 QYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDTL  500 (644)
T ss_pred             ccccccccceeeecCCc-eEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEEEe
Confidence            2    234455544454 7899999999999997 4443333 343 45789999999999876654 4467777654

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.70  E-value=0.47  Score=43.32  Aligned_cols=257  Identities=15%  Similarity=0.129  Sum_probs=125.2

Q ss_pred             CEEEEEeCCCeEEEEEcC-CceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeeccc-CeEEEe
Q 008496          287 TLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSG-PTLDVD  364 (563)
Q Consensus       287 ~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~-~~~~~~  364 (563)
                      .+++.|+-.+.+..-|.. |.+...-. -...|-+-+.- -|++++.|...|.+.+-+.+++.....|..... .+....
T Consensus        24 T~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~  101 (354)
T KOG4649|consen   24 TLVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQC  101 (354)
T ss_pred             eEEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEE
Confidence            456666666666655543 22222110 01111111111 467899999999999999999976555443221 111111


Q ss_pred             cCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECC-CCCEEEEEeCCCcEEEEeCCCCceeeeeccc--CC
Q 008496          365 WRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDP-TGSLLASCSDDVTAKIWNMKQDKYVHDLREH--SK  441 (563)
Q Consensus       365 ~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~-~~~~las~s~dg~i~iwd~~~~~~~~~~~~~--~~  441 (563)
                      -.+...+..++-|++.+..|......+...+-..+...+-+..| ++.+.++ ...|.+.--..+.. ..+++-.|  .+
T Consensus       102 d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a-~t~G~vlavt~~~~-~~~~~w~~~~~~  179 (354)
T KOG4649|consen  102 DFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAA-ITAGAVLAVTKNPY-SSTEFWAATRFG  179 (354)
T ss_pred             cCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEE-eccceEEEEccCCC-CcceehhhhcCC
Confidence            22345567788899999999888777766554334444455566 4444433 33333322222211 11111111  12


Q ss_pred             CEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEE-EEEc-CCCCEEEEEeCCCc-----
Q 008496          442 EIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYS-LAFS-PTGEYLASGSLDKS-----  514 (563)
Q Consensus       442 ~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~-l~~s-pdg~~lasgs~dg~-----  514 (563)
                      +|.+-   |.--.     +  .+.-+.-||.+.-+| ..|+.++... ..+||.. -+-| |..+.|..+..+..     
T Consensus       180 PiF~s---plcv~-----~--sv~i~~VdG~l~~f~-~sG~qvwr~~-t~GpIf~~Pc~s~Ps~q~i~~~~~~Cf~~~~p  247 (354)
T KOG4649|consen  180 PIFAS---PLCVG-----S--SVIITTVDGVLTSFD-ESGRQVWRPA-TKGPIFMEPCESRPSCQQISLENENCFCAPLP  247 (354)
T ss_pred             ccccC---ceecc-----c--eEEEEEeccEEEEEc-CCCcEEEeec-CCCceecccccCCCcceEEEEecCCeEEEecc
Confidence            22210   10000     0  233345677777777 5666666554 2344432 1222 33344444444432     


Q ss_pred             ---EEEEecCCCeeEEEEecCCCEEEEEEcC-C---CCEEEEEECCCeEEEEEe
Q 008496          515 ---MHIWSLKEGKIVKTYTGNGGIFEVCWNK-E---GDKIAACFANHTVCVLDF  561 (563)
Q Consensus       515 ---v~iw~~~~~~~~~~~~~~~~i~~l~w~~-~---g~~la~~~~~~~v~v~~~  561 (563)
                         -.+|..+.|.....+-...  ..++++. .   -+.|+.++.||.+.|+-.
T Consensus       248 ~~ghL~w~~~~g~t~~vy~~p~--l~F~~h~~~~S~~~ll~~~s~dgkv~il~~  299 (354)
T KOG4649|consen  248 IAGHLLWATQSGTTLHVYLSPK--LRFDLHSPGISYPKLLRRSSGDGKVMILMT  299 (354)
T ss_pred             ccceEEEEecCCcEEEEEeCcc--cceeccCCCCcchhhhhhhcCCCcEEEEEe
Confidence               2356666665444443211  1122221 1   247778888998888743

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.66  E-value=0.95  Score=46.31  Aligned_cols=225  Identities=16%  Similarity=0.161  Sum_probs=115.4

Q ss_pred             EEEEeCCCCCEEEEe-eCCC----cEEEEECCCCceeEEeeecccCeEEEecCCC-ceE-EEEeC----------CCeEE
Q 008496          319 FSLKWNKKGDYLLTG-SCDK----TAIVWDVKTEEWKQQFEFHSGPTLDVDWRNN-VSF-ATSST----------DNMIY  381 (563)
Q Consensus       319 ~~l~~~~~~~~l~s~-s~D~----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~----------d~~i~  381 (563)
                      ....++|+|++++-+ +..|    ++++.|+.+++.+......... ..+.|.++ ..| .+...          ...|+
T Consensus       127 ~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~-~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~  205 (414)
T PF02897_consen  127 GGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKF-SSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVY  205 (414)
T ss_dssp             EEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEES-EEEEECTTSSEEEEEECSTTTSS-CCGCCEEEE
T ss_pred             eeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccccc-ceEEEeCCCCEEEEEEeCcccccccCCCCcEEE
Confidence            457789999988743 3333    5999999999766532111111 12888766 333 33322          23478


Q ss_pred             EEEcCCCcc--eeeecCCCcc--eeEEEECCCCCEEEEEeC---C-CcEEEEeCCCC----ceeeeecccC-CCEEEEEE
Q 008496          382 VCKIGENRP--IKTFAGHQGE--VNCVKWDPTGSLLASCSD---D-VTAKIWNMKQD----KYVHDLREHS-KEIYTIRW  448 (563)
Q Consensus       382 ~~~~~~~~~--~~~~~~h~~~--i~~~~~~~~~~~las~s~---d-g~i~iwd~~~~----~~~~~~~~~~-~~i~~~~~  448 (563)
                      .+.+++...  ...|.+....  ...+..++|+++|+..+.   + ..+.+.++...    .....+.... +..+.+..
T Consensus       206 ~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~  285 (414)
T PF02897_consen  206 RHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDH  285 (414)
T ss_dssp             EEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEE
T ss_pred             EEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEEc
Confidence            888887643  3555554433  567889999998765433   2 34666677653    1222222222 22233333


Q ss_pred             ccCCCCCCCCCCcEEEEEE--eCCCeEEEEeCCCCeE---EEEecCCCCCEEEEEEcCCCCEEEE-EeCCC--cEEEEec
Q 008496          449 SPTGSGTNNPNQQLILASA--SFDSTVKLWDVELGKL---LYSLNGHREPVYSLAFSPTGEYLAS-GSLDK--SMHIWSL  520 (563)
Q Consensus       449 ~p~~~~~~~~~~~~~l~s~--s~dg~i~iwd~~~~~~---~~~~~~h~~~i~~l~~spdg~~las-gs~dg--~v~iw~~  520 (563)
                      . .        +.+++.|-  ..++.|.-.++.....   ...+..+...+.-..++..+.+|+. .-.++  .|+++++
T Consensus       286 ~-~--------~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~  356 (414)
T PF02897_consen  286 H-G--------DRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDL  356 (414)
T ss_dssp             E-T--------TEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEET
T ss_pred             c-C--------CEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEEC
Confidence            2 1        12344442  2234555556655431   2234445443333333445555554 33443  6889999


Q ss_pred             CCCeeEEEEe--cCCCEEEEEEcCCCCEEEEEECC
Q 008496          521 KEGKIVKTYT--GNGGIFEVCWNKEGDKIAACFAN  553 (563)
Q Consensus       521 ~~~~~~~~~~--~~~~i~~l~w~~~g~~la~~~~~  553 (563)
                      ..+.......  ..+.|..+..+++++.+...+++
T Consensus       357 ~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss  391 (414)
T PF02897_consen  357 DDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSS  391 (414)
T ss_dssp             T-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEE
T ss_pred             CCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeC
Confidence            8444444433  34456777777888877665443

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.65  E-value=0.0068  Score=65.23  Aligned_cols=93  Identities=23%  Similarity=0.287  Sum_probs=71.6

Q ss_pred             EEEEEeCCCeEEEEeCCCCeE-EEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEecC----CCEEE
Q 008496          463 ILASASFDSTVKLWDVELGKL-LYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGN----GGIFE  537 (563)
Q Consensus       463 ~l~s~s~dg~i~iwd~~~~~~-~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~~----~~i~~  537 (563)
                      .++.|+.-|.|-..|....-. ...-..-.+||++++|+.||+.++.|=.+|.|.+||+.++++++.+..+    .++..
T Consensus       101 ~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~  180 (1206)
T KOG2079|consen  101 PIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIF  180 (1206)
T ss_pred             eEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEE
Confidence            467788888888888764211 1111223578999999999999999999999999999999988887643    45778


Q ss_pred             EEEcCCCCEEEEEECCCe
Q 008496          538 VCWNKEGDKIAACFANHT  555 (563)
Q Consensus       538 l~w~~~g~~la~~~~~~~  555 (563)
                      +.|..++..+.++...|.
T Consensus       181 v~~t~~nS~llt~D~~Gs  198 (1206)
T KOG2079|consen  181 VGRTSQNSKLLTSDTGGS  198 (1206)
T ss_pred             EEEeCCCcEEEEccCCCc
Confidence            889888887777777765

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.45  E-value=0.011  Score=38.94  Aligned_cols=34  Identities=21%  Similarity=0.352  Sum_probs=29.9

Q ss_pred             CCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCee
Q 008496          491 REPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKI  525 (563)
Q Consensus       491 ~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~  525 (563)
                      ...|..++|+|...+||.|+.+|.|.||.+ +++.
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr   44 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR   44 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence            356999999999999999999999999998 5543

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=96.39  E-value=1  Score=43.41  Aligned_cols=266  Identities=15%  Similarity=0.230  Sum_probs=120.6

Q ss_pred             CCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCceeEe---eccC---CCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCC
Q 008496          274 SKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCT---LSKH---KGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTE  347 (563)
Q Consensus       274 ~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~~~~---~~~h---~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~  347 (563)
                      ...+..|.|..+..-+++|.. |.| +-..+|...-.   ....   .-...++.|..+ ..+++| ..+.+ +.....+
T Consensus        16 ~~~l~dV~F~d~~~G~~VG~~-g~i-l~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~-~g~ivG-~~g~l-l~T~DgG   90 (302)
T PF14870_consen   16 DKPLLDVAFVDPNHGWAVGAY-GTI-LKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGN-EGWIVG-EPGLL-LHTTDGG   90 (302)
T ss_dssp             SS-EEEEEESSSS-EEEEETT-TEE-EEESSTTSS-EE-----S-----EEEEEEEETT-EEEEEE-ETTEE-EEESSTT
T ss_pred             CCceEEEEEecCCEEEEEecC-CEE-EEECCCCccccccccCCCccceeeEEEEEecCC-ceEEEc-CCceE-EEecCCC
Confidence            457889999866666666654 443 33344432111   1111   112556777543 344444 44433 3333333


Q ss_pred             -ceeEEeee--cccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEE
Q 008496          348 -EWKQQFEF--HSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKI  424 (563)
Q Consensus       348 -~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~i  424 (563)
                       .+......  -.+....+...++......+..+.|+.-.-....=......-.+.+..+.-+++|+++++++.-....-
T Consensus        91 ~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~~~~G~iy~T~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s  170 (302)
T PF14870_consen   91 KTWERVPLSSKLPGSPFGITALGDGSAELAGDRGAIYRTTDGGKTWQAVVSETSGSINDITRSSDGRYVAVSSRGNFYSS  170 (302)
T ss_dssp             SS-EE----TT-SS-EEEEEEEETTEEEEEETT--EEEESSTTSSEEEEE-S----EEEEEE-TTS-EEEEETTSSEEEE
T ss_pred             CCcEEeecCCCCCCCeeEEEEcCCCcEEEEcCCCcEEEeCCCCCCeeEcccCCcceeEeEEECCCCcEEEEECcccEEEE
Confidence             23322110  111222222222333333444455544322211111122334467888888999999988877666677


Q ss_pred             EeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeC-CCCeEEEE----ecCCCCCEEEEEE
Q 008496          425 WNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDV-ELGKLLYS----LNGHREPVYSLAF  499 (563)
Q Consensus       425 wd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~-~~~~~~~~----~~~h~~~i~~l~~  499 (563)
                      |+.-.......-+.-...|.++.|.|++.        +++  ....|.|++=+. .....-..    +..-.-.+..++|
T Consensus       171 ~~~G~~~w~~~~r~~~~riq~~gf~~~~~--------lw~--~~~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~  240 (302)
T PF14870_consen  171 WDPGQTTWQPHNRNSSRRIQSMGFSPDGN--------LWM--LARGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAY  240 (302)
T ss_dssp             E-TT-SS-EEEE--SSS-EEEEEE-TTS---------EEE--EETTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEE
T ss_pred             ecCCCccceEEccCccceehhceecCCCC--------EEE--EeCCcEEEEccCCCCccccccccCCcccCceeeEEEEe
Confidence            88654333333344567899999999864        333  337788888772 22221111    1112234899999


Q ss_pred             cCCCCEEEEEeCCCcEEEEecCCCeeEEEEec----CCCEEEEEEcCCCCEEEEEECCCeEE
Q 008496          500 SPTGEYLASGSLDKSMHIWSLKEGKIVKTYTG----NGGIFEVCWNKEGDKIAACFANHTVC  557 (563)
Q Consensus       500 spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~----~~~i~~l~w~~~g~~la~~~~~~~v~  557 (563)
                      .+++...|+|+. |.+ +.....|+--+....    ...++.+.|..+.+-+|.| .+|.+-
T Consensus       241 ~~~~~~wa~gg~-G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG-~~G~ll  299 (302)
T PF14870_consen  241 RPPNEIWAVGGS-GTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLG-QDGVLL  299 (302)
T ss_dssp             SSSS-EEEEEST-T-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE--STTEEE
T ss_pred             cCCCCEEEEeCC-ccE-EEeCCCCccceECccccCCCCceEEEEEcCCCceEEEC-CCcEEE
Confidence            999888887664 433 445555554333322    2347888988776666666 666553

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.35  E-value=0.014  Score=38.46  Aligned_cols=34  Identities=24%  Similarity=0.428  Sum_probs=30.1

Q ss_pred             CCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCce
Q 008496          274 SKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDL  307 (563)
Q Consensus       274 ~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~  307 (563)
                      ...|.+++|+|...+||.|+.+|.|.++..+++.
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~qr   44 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLNWQR   44 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEECCCcC
Confidence            3569999999999999999999999999987653

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=96.32  E-value=0.64  Score=49.44  Aligned_cols=222  Identities=15%  Similarity=0.258  Sum_probs=112.0

Q ss_pred             CCCEEEEEeCCC------eEEEEEcCCceeEeecc--CCCCEEEEEeCCCCCEEEEeeCC------CcEEEEECCCCcee
Q 008496          285 EGTLLATGSYDG------QARIWSTNGDLKCTLSK--HKGPIFSLKWNKKGDYLLTGSCD------KTAIVWDVKTEEWK  350 (563)
Q Consensus       285 ~g~~l~sg~~dg------~i~vw~~~~~~~~~~~~--h~~~V~~l~~~~~~~~l~s~s~D------~~v~iwd~~~~~~~  350 (563)
                      .+.+++.||.++      .+..+|........+..  +...-.+++.. ++...++|+.|      .++..||..+.+|.
T Consensus       284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~  362 (571)
T KOG4441|consen  284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWT  362 (571)
T ss_pred             CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCcee
Confidence            456677777763      56677765442222211  22223344433 34666788888      36788999998887


Q ss_pred             EEeeeccc-CeEEEecCCCceEEEEeCCCe-----EEEEEcCCCc--ceeeecCCCcceeEEEECCCCCEEEEEeCCC--
Q 008496          351 QQFEFHSG-PTLDVDWRNNVSFATSSTDNM-----IYVCKIGENR--PIKTFAGHQGEVNCVKWDPTGSLLASCSDDV--  420 (563)
Q Consensus       351 ~~~~~~~~-~~~~~~~~~~~~~~~~~~d~~-----i~~~~~~~~~--~~~~~~~h~~~i~~~~~~~~~~~las~s~dg--  420 (563)
                      ..-..... .-..+.-.++..++.++.||.     +-.||..+++  .+..+.........+.  -+|++.++|+.++  
T Consensus       363 ~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~--~~g~iYi~GG~~~~~  440 (571)
T KOG4441|consen  363 PVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAV--LGGKLYIIGGGDGSS  440 (571)
T ss_pred             ccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEE--ECCEEEEEcCcCCCc
Confidence            63332221 123344456677788887764     4445544432  1111111111122222  2688888888665  


Q ss_pred             ----cEEEEeCCCCceee--eecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCe-----EEEEeCCCCeE--EEEe
Q 008496          421 ----TAKIWNMKQDKYVH--DLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDST-----VKLWDVELGKL--LYSL  487 (563)
Q Consensus       421 ----~i~iwd~~~~~~~~--~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~-----i~iwd~~~~~~--~~~~  487 (563)
                          ++..||..++....  .+...-... .++.- +         ..+.+.|+.|+.     |..+|..+.+-  +..+
T Consensus       441 ~~l~sve~YDP~t~~W~~~~~M~~~R~~~-g~a~~-~---------~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m  509 (571)
T KOG4441|consen  441 NCLNSVECYDPETNTWTLIAPMNTRRSGF-GVAVL-N---------GKIYVVGGFDGTSALSSVERYDPETNQWTMVAPM  509 (571)
T ss_pred             cccceEEEEcCCCCceeecCCcccccccc-eEEEE-C---------CEEEEECCccCCCccceEEEEcCCCCceeEcccC
Confidence                35677776655432  111110000 11111 1         135677777763     67788765442  2222


Q ss_pred             cCCCCCEEEEEEcCCCCEEEEEeCCC-----cEEEEecCC
Q 008496          488 NGHREPVYSLAFSPTGEYLASGSLDK-----SMHIWSLKE  522 (563)
Q Consensus       488 ~~h~~~i~~l~~spdg~~lasgs~dg-----~v~iw~~~~  522 (563)
                      ......+-.+.+  +++..|+|+.||     +|..||..+
T Consensus       510 ~~~rs~~g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp~~  547 (571)
T KOG4441|consen  510 TSPRSAVGVVVL--GGKLYAVGGFDGNNNLNTVECYDPET  547 (571)
T ss_pred             ccccccccEEEE--CCEEEEEecccCccccceeEEcCCCC
Confidence            222222222222  567778888776     355555443

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=96.27  E-value=0.18  Score=45.17  Aligned_cols=137  Identities=12%  Similarity=0.213  Sum_probs=86.9

Q ss_pred             EEECCCCCEEEEEeCC---------CeEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEE-EeeCCCcEEEEE--CCCC
Q 008496          280 LDWNGEGTLLATGSYD---------GQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLL-TGSCDKTAIVWD--VKTE  347 (563)
Q Consensus       280 l~~s~~g~~l~sg~~d---------g~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~-s~s~D~~v~iwd--~~~~  347 (563)
                      -..+|+|++++-.-.|         |.++.|-..++....... -+--.+|+|+.+.+.+. .-+.+-+|.-||  ..++
T Consensus       114 gkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~v~~i~~~-v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG  192 (310)
T KOG4499|consen  114 GKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGHQVELIWNC-VGISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTG  192 (310)
T ss_pred             CccCCCCceeeeeeccccccccccccEEEEeccCCCceeeehh-ccCCccccccccCcEEEEEccCceEEeeeecCCCcc
Confidence            3457899885433222         456666555444333221 12235688887776654 445566777777  5555


Q ss_pred             ceeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeC
Q 008496          348 EWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNM  427 (563)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~  427 (563)
                      ...+                           .-.+++++..+|...+.     ...++++.+|++.+++-+-++|...|.
T Consensus       193 ~~sn---------------------------r~~i~dlrk~~~~e~~~-----PDGm~ID~eG~L~Va~~ng~~V~~~dp  240 (310)
T KOG4499|consen  193 DLSN---------------------------RKVIFDLRKSQPFESLE-----PDGMTIDTEGNLYVATFNGGTVQKVDP  240 (310)
T ss_pred             cccC---------------------------cceeEEeccCCCcCCCC-----CCcceEccCCcEEEEEecCcEEEEECC
Confidence            4221                           11245555444332221     223455678999999999999999999


Q ss_pred             CCCceeeeecccCCCEEEEEEc
Q 008496          428 KQDKYVHDLREHSKEIYTIRWS  449 (563)
Q Consensus       428 ~~~~~~~~~~~~~~~i~~~~~~  449 (563)
                      .+++.+.+++-....|++++|-
T Consensus       241 ~tGK~L~eiklPt~qitsccFg  262 (310)
T KOG4499|consen  241 TTGKILLEIKLPTPQITSCCFG  262 (310)
T ss_pred             CCCcEEEEEEcCCCceEEEEec
Confidence            9999999999889999999985

>PHA02713 hypothetical protein; Provisional

Probab=96.14  E-value=0.49  Score=50.33  Aligned_cols=185  Identities=4%  Similarity=0.073  Sum_probs=89.1

Q ss_pred             CCCEEEEeeCC------CcEEEEECCCCceeEEeeeccc-CeEEEecCCCceEEEEeCCC-----eEEEEEcCCCc--ce
Q 008496          326 KGDYLLTGSCD------KTAIVWDVKTEEWKQQFEFHSG-PTLDVDWRNNVSFATSSTDN-----MIYVCKIGENR--PI  391 (563)
Q Consensus       326 ~~~~l~s~s~D------~~v~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~d~-----~i~~~~~~~~~--~~  391 (563)
                      ++...+.|+.+      .++..||+.+..|...-..... .-..+.-.++..++.++.++     .+..|+..++.  .+
T Consensus       303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~  382 (557)
T PHA02713        303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKML  382 (557)
T ss_pred             CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEEC
Confidence            44555666643      3477889888877543222111 11122333555666666543     35667665432  11


Q ss_pred             eeecCCCcceeEEEECCCCCEEEEEeCCC-----------------------cEEEEeCCCCceeeeecccCCCEE-EEE
Q 008496          392 KTFAGHQGEVNCVKWDPTGSLLASCSDDV-----------------------TAKIWNMKQDKYVHDLREHSKEIY-TIR  447 (563)
Q Consensus       392 ~~~~~h~~~i~~~~~~~~~~~las~s~dg-----------------------~i~iwd~~~~~~~~~~~~~~~~i~-~~~  447 (563)
                      ..+.........+..  ++++.+.|+.++                       .+..||..+.+....-........ +++
T Consensus       383 ~~mp~~r~~~~~~~~--~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~  460 (557)
T PHA02713        383 PDMPIALSSYGMCVL--DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVV  460 (557)
T ss_pred             CCCCcccccccEEEE--CCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccccCcEE
Confidence            111111111112222  577778887653                       355677665543211000000000 000


Q ss_pred             EccCCCCCCCCCCcEEEEEEeCC------CeEEEEeCCC-C--eEEEEecCCCCCEEEEEEcCCCCEEEEEeCCC--cEE
Q 008496          448 WSPTGSGTNNPNQQLILASASFD------STVKLWDVEL-G--KLLYSLNGHREPVYSLAFSPTGEYLASGSLDK--SMH  516 (563)
Q Consensus       448 ~~p~~~~~~~~~~~~~l~s~s~d------g~i~iwd~~~-~--~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg--~v~  516 (563)
                               .-++. +.+.|+.+      ..+..||..+ .  ..+..+.........+++  +|+..++||.++  .+.
T Consensus       461 ---------~~~~~-IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e  528 (557)
T PHA02713        461 ---------SHKDD-IYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DNTIMMLHCYESYMLQD  528 (557)
T ss_pred             ---------EECCE-EEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CCEEEEEeeecceeehh
Confidence                     00122 33445543      2467788876 3  333334333333333444  788899999888  677


Q ss_pred             EEecCCCe
Q 008496          517 IWSLKEGK  524 (563)
Q Consensus       517 iw~~~~~~  524 (563)
                      .||..+.+
T Consensus       529 ~yd~~~~~  536 (557)
T PHA02713        529 TFNVYTYE  536 (557)
T ss_pred             hcCccccc
Confidence            77776654

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=96.10  E-value=1.4  Score=42.18  Aligned_cols=225  Identities=14%  Similarity=0.214  Sum_probs=113.5

Q ss_pred             CCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCC
Q 008496          226 AGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNG  305 (563)
Q Consensus       226 ~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~  305 (563)
                      .++.|+.|..+| +.++++.....       +..  .         .....|+.+..-++-+.|++-+ |+.+++++.+.
T Consensus         6 ~~~~L~vGt~~G-l~~~~~~~~~~-------~~~--i---------~~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~   65 (275)
T PF00780_consen    6 WGDRLLVGTEDG-LYVYDLSDPSK-------PTR--I---------LKLSSITQLSVLPELNLLLVLS-DGQLYVYDLDS   65 (275)
T ss_pred             CCCEEEEEECCC-EEEEEecCCcc-------cee--E---------eecceEEEEEEecccCEEEEEc-CCccEEEEchh
Confidence            467899998888 88888722110       000  0         0122388888888766665544 59999998643


Q ss_pred             ceeEe---------------eccCCCCEEEEE--eCCCCCEEEEeeCCCcEEEEECCCC-----ceeEEeeecccCeEEE
Q 008496          306 DLKCT---------------LSKHKGPIFSLK--WNKKGDYLLTGSCDKTAIVWDVKTE-----EWKQQFEFHSGPTLDV  363 (563)
Q Consensus       306 ~~~~~---------------~~~h~~~V~~l~--~~~~~~~l~s~s~D~~v~iwd~~~~-----~~~~~~~~~~~~~~~~  363 (563)
                      -....               .......+...+  -...+...+.+...++|.+|.....     ...+.+... ..+..+
T Consensus        66 l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp-~~~~~i  144 (275)
T PF00780_consen   66 LEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLP-DPPSSI  144 (275)
T ss_pred             hccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcC-CCcEEE
Confidence            11111               111122333333  1234455566666778888876542     233333332 566778


Q ss_pred             ecCCCceEEEEeCCCeEEEEEcCCCcceeeecCC------------CcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCc
Q 008496          364 DWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGH------------QGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDK  431 (563)
Q Consensus       364 ~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h------------~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~  431 (563)
                      .|.++. ++.+. .....+.++.+..+...+...            ..++..+..+ ++.+|++ .++ .-.+-|. .|.
T Consensus       145 ~~~~~~-i~v~~-~~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~Ll~-~~~-~g~fv~~-~G~  218 (275)
T PF00780_consen  145 AFLGNK-ICVGT-SKGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS-DNEFLLC-YDN-IGVFVNK-NGE  218 (275)
T ss_pred             EEeCCE-EEEEe-CCceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC-CceEEEE-ecc-eEEEEcC-CCC
Confidence            887444 33333 334566677654443332111            1233344443 3455543 322 2222232 222


Q ss_pred             eee--eecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCC
Q 008496          432 YVH--DLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGH  490 (563)
Q Consensus       432 ~~~--~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h  490 (563)
                      +.+  .+.-. ....++.+..          + +|+..+ ++.|.||++.+++++.++...
T Consensus       219 ~~r~~~i~W~-~~p~~~~~~~----------p-yli~~~-~~~iEV~~~~~~~lvQ~i~~~  266 (275)
T PF00780_consen  219 PSRKSTIQWS-SAPQSVAYSS----------P-YLIAFS-SNSIEVRSLETGELVQTIPLP  266 (275)
T ss_pred             cCcccEEEcC-CchhEEEEEC----------C-EEEEEC-CCEEEEEECcCCcEEEEEECC
Confidence            221  11111 1222333321          1 444433 466999999999998887643

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=96.06  E-value=0.27  Score=51.78  Aligned_cols=92  Identities=20%  Similarity=0.400  Sum_probs=64.6

Q ss_pred             EeCCCeEEEEeCCCCeEEEEec-CCCCCEEEEEE--cCCCCEEEEEeCCCcEEEEecCC---------CeeEEEEe----
Q 008496          467 ASFDSTVKLWDVELGKLLYSLN-GHREPVYSLAF--SPTGEYLASGSLDKSMHIWSLKE---------GKIVKTYT----  530 (563)
Q Consensus       467 ~s~dg~i~iwd~~~~~~~~~~~-~h~~~i~~l~~--spdg~~lasgs~dg~v~iw~~~~---------~~~~~~~~----  530 (563)
                      -+....+.|||.+.+...++-. ...++|.++.|  .|||+.+.+.|....|.+|.-..         ...++.+.    
T Consensus        47 ~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~  126 (631)
T PF12234_consen   47 DSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKIDISSH  126 (631)
T ss_pred             ECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeEEEEeecC
Confidence            3344579999999888655433 34678999988  47899999999999999996531         12333332    


Q ss_pred             cCCCEEEEEEcCCCCEEEEEECCCeEEEEE
Q 008496          531 GNGGIFEVCWNKEGDKIAACFANHTVCVLD  560 (563)
Q Consensus       531 ~~~~i~~l~w~~~g~~la~~~~~~~v~v~~  560 (563)
                      ....|.+.+|-++|..++++ +| .+.|+|
T Consensus       127 T~h~Igds~Wl~~G~LvV~s-GN-qlfv~d  154 (631)
T PF12234_consen  127 TPHPIGDSIWLKDGTLVVGS-GN-QLFVFD  154 (631)
T ss_pred             CCCCccceeEecCCeEEEEe-CC-EEEEEC
Confidence            13468899999999766555 44 577764

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=96.00  E-value=1.8  Score=42.57  Aligned_cols=139  Identities=12%  Similarity=0.138  Sum_probs=84.3

Q ss_pred             CCEEEEEeC---------C-CeEEEEEcCCc------eeE-eeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCc
Q 008496          286 GTLLATGSY---------D-GQARIWSTNGD------LKC-TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEE  348 (563)
Q Consensus       286 g~~l~sg~~---------d-g~i~vw~~~~~------~~~-~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~  348 (563)
                      -.+|++|+.         . |.+.+++....      +.. .-....++|++++-- + .+|+.+ ..+.|.+|++...+
T Consensus        42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~-~~lv~~-~g~~l~v~~l~~~~  118 (321)
T PF03178_consen   42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-N-GRLVVA-VGNKLYVYDLDNSK  118 (321)
T ss_dssp             SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-T-TEEEEE-ETTEEEEEEEETTS
T ss_pred             cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-C-CEEEEe-ecCEEEEEEccCcc
Confidence            467777754         2 88999987652      221 123457899999755 3 344444 35899999998877


Q ss_pred             -eeEEeeecc-cCeEEEecCCCceEEEEeCCCeEEEEEcCC-CcceeeecC--CCcceeEEEECCCCCEEEEEeCCCcEE
Q 008496          349 -WKQQFEFHS-GPTLDVDWRNNVSFATSSTDNMIYVCKIGE-NRPIKTFAG--HQGEVNCVKWDPTGSLLASCSDDVTAK  423 (563)
Q Consensus       349 -~~~~~~~~~-~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~-~~~~~~~~~--h~~~i~~~~~~~~~~~las~s~dg~i~  423 (563)
                       +...-..+. ..+.++....+ .++.+.....+.++.... ...+..+..  ....++++.+-++++.++.+..+|.+.
T Consensus       119 ~l~~~~~~~~~~~i~sl~~~~~-~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~  197 (321)
T PF03178_consen  119 TLLKKAFYDSPFYITSLSVFKN-YILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLF  197 (321)
T ss_dssp             SEEEEEEE-BSSSEEEEEEETT-EEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEE
T ss_pred             cchhhheecceEEEEEEecccc-EEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEE
Confidence             555443322 34556665555 555666666666665443 222222221  234577888876667899999999999


Q ss_pred             EEeCC
Q 008496          424 IWNMK  428 (563)
Q Consensus       424 iwd~~  428 (563)
                      ++...
T Consensus       198 ~l~~~  202 (321)
T PF03178_consen  198 VLRYN  202 (321)
T ss_dssp             EEEE-
T ss_pred             EEEEC
Confidence            98765

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=95.96  E-value=2.3  Score=46.78  Aligned_cols=159  Identities=14%  Similarity=0.260  Sum_probs=87.6

Q ss_pred             ceEEEEeCCCeEEEEEcCCCcceeeecCCCccee-------------EEEECC--CCCEEEEEeC----------CCcEE
Q 008496          369 VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVN-------------CVKWDP--TGSLLASCSD----------DVTAK  423 (563)
Q Consensus       369 ~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~-------------~~~~~~--~~~~las~s~----------dg~i~  423 (563)
                      ..+...+.|+.++-.|..+++.+..|. ..+.|.             .+.-.|  .+..++.|+.          +|.|+
T Consensus       261 ~rV~~~T~Dg~LiALDA~TGk~~W~fg-~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~  339 (764)
T TIGR03074       261 RRIILPTSDARLIALDADTGKLCEDFG-NNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIR  339 (764)
T ss_pred             CEEEEecCCCeEEEEECCCCCEEEEec-CCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEE
Confidence            356667788999888988888776653 222211             011111  1234555532          68899


Q ss_pred             EEeCCCCceeeeeccc---------CCCEEE-----------------EEEccCCCCCCCC-CCcEEEEEEeCCCeEEEE
Q 008496          424 IWNMKQDKYVHDLREH---------SKEIYT-----------------IRWSPTGSGTNNP-NQQLILASASFDSTVKLW  476 (563)
Q Consensus       424 iwd~~~~~~~~~~~~~---------~~~i~~-----------------~~~~p~~~~~~~~-~~~~~l~s~s~dg~i~iw  476 (563)
                      -+|.++++.+-.+..-         .+..+.                 +.+-|.|...... .........-..++|.-.
T Consensus       340 A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvAL  419 (764)
T TIGR03074       340 AFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVAL  419 (764)
T ss_pred             EEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEE
Confidence            9999999887654311         011111                 1111111110000 000000011234667788


Q ss_pred             eCCCCeEEEEecC--CC--------CCEEEEEEcC-CCC---EEEEEeCCCcEEEEecCCCeeEEEE
Q 008496          477 DVELGKLLYSLNG--HR--------EPVYSLAFSP-TGE---YLASGSLDKSMHIWSLKEGKIVKTY  529 (563)
Q Consensus       477 d~~~~~~~~~~~~--h~--------~~i~~l~~sp-dg~---~lasgs~dg~v~iw~~~~~~~~~~~  529 (563)
                      |+++|+.+..++.  |.        .++. +.+.- +|+   .++.++.+|.++++|.++|+.+...
T Consensus       420 D~~TGk~~W~~Q~~~hD~WD~D~~~~p~L-~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~  485 (764)
T TIGR03074       420 DATTGKERWVFQTVHHDLWDMDVPAQPSL-VDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPV  485 (764)
T ss_pred             eCCCCceEEEecccCCccccccccCCceE-EeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeec
Confidence            9999999887754  21        1221 22322 663   7889999999999999999987654

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=95.88  E-value=0.0061  Score=64.22  Aligned_cols=124  Identities=12%  Similarity=0.168  Sum_probs=69.7

Q ss_pred             eEecCCCCceEEEEECC-CCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECC---
Q 008496          209 TILEGHTSEVCACAWSP-AGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG---  284 (563)
Q Consensus       209 ~~l~~h~~~V~~~~~sp-~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~---  284 (563)
                      .+++|-.++|-.++|-. +...++  -.-|...+|++.-  ..+..+    ..+.+ +..   .+...++.-+.|.|   
T Consensus       126 ~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~--l~G~iq----~~l~v-~~~---~p~gs~~~~V~wcp~~~  193 (1283)
T KOG1916|consen  126 ELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDV--LQGEIQ----PQLEV-TPI---TPYGSDPQLVSWCPIAV  193 (1283)
T ss_pred             HHHhcCCCCcccccccccCChHHH--HHhhhhheeehHh--hccccc----cceEE-eec---CcCCCCcceeeeccccc
Confidence            34567777777777743 112222  2235678898752  111111    11111 111   11233445566655   


Q ss_pred             CCCEEEEEeCCCeEEEEEcCCceeEeeccCCCCEEEEE-----------eCCCCCEEEEeeCCCcEEEEEC
Q 008496          285 EGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLK-----------WNKKGDYLLTGSCDKTAIVWDV  344 (563)
Q Consensus       285 ~g~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~-----------~~~~~~~l~s~s~D~~v~iwd~  344 (563)
                      +.-++..+-.++.+++...+......+.+|...++.++           .+|||+.|+.++.||.++.|.+
T Consensus       194 ~~~~ic~~~~~~~i~lL~~~ra~~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qi  264 (1283)
T KOG1916|consen  194 NKVYICYGLKGGEIRLLNINRALRSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQI  264 (1283)
T ss_pred             ccceeeeccCCCceeEeeechHHHHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeee
Confidence            55667777778899887766554455566766555443           4778888888888887777754

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=95.84  E-value=0.61  Score=46.80  Aligned_cols=143  Identities=17%  Similarity=0.176  Sum_probs=74.3

Q ss_pred             ceeEEEECCCCCEEEEEe-----------CCC-cEEEEeCCC--Cce--eeeecccCCCEEEEEEccCCCCCCCCCCcEE
Q 008496          400 EVNCVKWDPTGSLLASCS-----------DDV-TAKIWNMKQ--DKY--VHDLREHSKEIYTIRWSPTGSGTNNPNQQLI  463 (563)
Q Consensus       400 ~i~~~~~~~~~~~las~s-----------~dg-~i~iwd~~~--~~~--~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~  463 (563)
                      ....|+|.++|+++++..           ..+ .|.+++-..  ++.  ...+.........+++.+++          +
T Consensus        15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G----------l   84 (367)
T TIGR02604        15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG----------V   84 (367)
T ss_pred             CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC----------E
Confidence            345788999999877653           223 566665322  221  12222222234566666554          3


Q ss_pred             EEEEeCCCeEEEEeCCC-------CeEEEE-ecC----CCCCEEEEEEcCCCCEEEEEeCC-------------------
Q 008496          464 LASASFDSTVKLWDVEL-------GKLLYS-LNG----HREPVYSLAFSPTGEYLASGSLD-------------------  512 (563)
Q Consensus       464 l~s~s~dg~i~iwd~~~-------~~~~~~-~~~----h~~~i~~l~~spdg~~lasgs~d-------------------  512 (563)
                      +++ +.....++.|...       .+.+.. +..    +......++|.|||.+.++-+..                   
T Consensus        85 yV~-~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~  163 (367)
T TIGR02604        85 YVA-TPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLG  163 (367)
T ss_pred             EEe-CCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccC
Confidence            333 3333333445431       122222 222    12346789999999877754421                   


Q ss_pred             CcEEEEecCCCeeEEEEecCCCEEEEEEcCCCCEEEEEECC
Q 008496          513 KSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFAN  553 (563)
Q Consensus       513 g~v~iw~~~~~~~~~~~~~~~~i~~l~w~~~g~~la~~~~~  553 (563)
                      |.|.-++..++++...-.+......++|+++|+.+++-..+
T Consensus       164 g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~~G~l~~tdn~~  204 (367)
T TIGR02604       164 GGLFRYNPDGGKLRVVAHGFQNPYGHSVDSWGDVFFCDNDD  204 (367)
T ss_pred             ceEEEEecCCCeEEEEecCcCCCccceECCCCCEEEEccCC
Confidence            34555555544432221222335789999999887664333

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=95.62  E-value=0.41  Score=48.97  Aligned_cols=148  Identities=18%  Similarity=0.354  Sum_probs=89.4

Q ss_pred             cceeEEEECCCCCEEE-EEe--CCCcEEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEE
Q 008496          399 GEVNCVKWDPTGSLLA-SCS--DDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKL  475 (563)
Q Consensus       399 ~~i~~~~~~~~~~~la-s~s--~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~i  475 (563)
                      .++..++|. ||+.++ |.-  .+|.+++=|.   +.+..|    ..|+.+.|.|.+....    . .|++......|.+
T Consensus        20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfGds---~viGqF----EhV~GlsW~P~~~~~~----p-aLLAVQHkkhVtV   86 (671)
T PF15390_consen   20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFGDS---KVIGQF----EHVHGLSWAPPCTADT----P-ALLAVQHKKHVTV   86 (671)
T ss_pred             ccccceEec-CCCEEEEEeeeeeCCccccCCc---cEeecc----ceeeeeeecCcccCCC----C-ceEEEeccceEEE
Confidence            367789997 666543 321  2444443321   122222    3588999999764321    1 3455667889999


Q ss_pred             EeCC-----CCeEEEEecCC---CCCE--EEEEEcCCCCEEEEEeCCCcEEEEecCC--CeeEEEEecCCCEEEEEEcCC
Q 008496          476 WDVE-----LGKLLYSLNGH---REPV--YSLAFSPTGEYLASGSLDKSMHIWSLKE--GKIVKTYTGNGGIFEVCWNKE  543 (563)
Q Consensus       476 wd~~-----~~~~~~~~~~h---~~~i--~~l~~spdg~~lasgs~dg~v~iw~~~~--~~~~~~~~~~~~i~~l~w~~~  543 (563)
                      |-+.     .++.+.+...+   .-||  ....|+|....|+.-.....-.+++++.  .++.......+-|.+.||.+|
T Consensus        87 WqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~D  166 (671)
T PF15390_consen   87 WQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKD  166 (671)
T ss_pred             EEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCc
Confidence            9864     23333332211   1222  3468999999988766554434666643  234445566778999999999


Q ss_pred             CCEEEEEECCCeE--EEEE
Q 008496          544 GDKIAACFANHTV--CVLD  560 (563)
Q Consensus       544 g~~la~~~~~~~v--~v~~  560 (563)
                      |++|+++-++ .+  .|||
T Consensus       167 G~RLVVAvGS-sLHSyiWd  184 (671)
T PF15390_consen  167 GQRLVVAVGS-SLHSYIWD  184 (671)
T ss_pred             CCEEEEEeCC-eEEEEEec
Confidence            9999988554 44  5554

>PHA02713 hypothetical protein; Provisional

Probab=95.37  E-value=1.5  Score=46.78  Aligned_cols=93  Identities=13%  Similarity=0.186  Sum_probs=45.8

Q ss_pred             cEEEEECCCCceeEEeeecccC-eEEEecCCCceEEEEeCC------CeEEEEEcCCCc--ceeeecCCCcceeEEEECC
Q 008496          338 TAIVWDVKTEEWKQQFEFHSGP-TLDVDWRNNVSFATSSTD------NMIYVCKIGENR--PIKTFAGHQGEVNCVKWDP  408 (563)
Q Consensus       338 ~v~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d------~~i~~~~~~~~~--~~~~~~~h~~~i~~~~~~~  408 (563)
                      .+..||+.+.+|...-...... -..+...++..++.++.+      ..+..|+...+.  .+..+.........+.+  
T Consensus       273 ~v~~yd~~~~~W~~l~~mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~--  350 (557)
T PHA02713        273 CILVYNINTMEYSVISTIPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVI--  350 (557)
T ss_pred             CEEEEeCCCCeEEECCCCCccccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEE--
Confidence            5677888777765422211110 112233355566666643      235666665442  11111111111222222  


Q ss_pred             CCCEEEEEeCCC-----cEEEEeCCCCce
Q 008496          409 TGSLLASCSDDV-----TAKIWNMKQDKY  432 (563)
Q Consensus       409 ~~~~las~s~dg-----~i~iwd~~~~~~  432 (563)
                      +|++.+.|+.++     ++..||..+...
T Consensus       351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W  379 (557)
T PHA02713        351 DDTIYAIGGQNGTNVERTIECYTMGDDKW  379 (557)
T ss_pred             CCEEEEECCcCCCCCCceEEEEECCCCeE
Confidence            578888888764     377888776543

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=95.05  E-value=0.076  Score=47.45  Aligned_cols=103  Identities=17%  Similarity=0.161  Sum_probs=64.6

Q ss_pred             CCEEEEeeCCCcEEEEECCCCceeE-EeeecccCeEEEec--CCCceEEEEeCCCeEEEEEcCCCcceeeecCCC-ccee
Q 008496          327 GDYLLTGSCDKTAIVWDVKTEEWKQ-QFEFHSGPTLDVDW--RNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQ-GEVN  402 (563)
Q Consensus       327 ~~~l~s~s~D~~v~iwd~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~-~~i~  402 (563)
                      +..++.|+.||.|.+|+......+. .+.....++...-.  .......+++.++.|+.|.+...+.+.....|+ .++.
T Consensus        70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e  149 (238)
T KOG2444|consen   70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGE  149 (238)
T ss_pred             CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcc
Confidence            3568899999999999876221111 11111122222212  222355677899999999998888777666676 4555


Q ss_pred             EEEECCCCCEEEEE--eCCCcEEEEeCCC
Q 008496          403 CVKWDPTGSLLASC--SDDVTAKIWNMKQ  429 (563)
Q Consensus       403 ~~~~~~~~~~las~--s~dg~i~iwd~~~  429 (563)
                      .+..+..++++++.  |.|..++.|++..
T Consensus       150 ~~ivv~sd~~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  150 ELIVVGSDEFLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             eeEEecCCceEEeeccccchhhhhcchhh
Confidence            55555566677776  7777777777653

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=94.94  E-value=1.5  Score=45.14  Aligned_cols=147  Identities=14%  Similarity=0.292  Sum_probs=75.0

Q ss_pred             CeEEEecCCCceEEEEe---CCCeEEEEEcCCCcceeeecCCCcceeEEEECCCC----CEEEEEeCCCcEEEEeCC---
Q 008496          359 PTLDVDWRNNVSFATSS---TDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTG----SLLASCSDDVTAKIWNMK---  428 (563)
Q Consensus       359 ~~~~~~~~~~~~~~~~~---~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~----~~las~s~dg~i~iwd~~---  428 (563)
                      |+..+.|.+...++...   -+|.+.   .+..+.+..|    ..|..+.|.|-+    .-+........|.||.+.   
T Consensus        21 PvhGlaWTDGkqVvLT~L~l~~gE~k---fGds~viGqF----EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~   93 (671)
T PF15390_consen   21 PVHGLAWTDGKQVVLTDLQLHNGEPK---FGDSKVIGQF----EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPST   93 (671)
T ss_pred             cccceEecCCCEEEEEeeeeeCCccc---cCCccEeecc----ceeeeeeecCcccCCCCceEEEeccceEEEEEeccCc
Confidence            56677787665544321   111111   1222233333    358889999853    234444556789999874   


Q ss_pred             --CCceeeeecccC-C--C--EEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCC--CCeEEEEecCCCCCEEEEEE
Q 008496          429 --QDKYVHDLREHS-K--E--IYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVE--LGKLLYSLNGHREPVYSLAF  499 (563)
Q Consensus       429 --~~~~~~~~~~~~-~--~--i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~--~~~~~~~~~~h~~~i~~l~~  499 (563)
                        +.+.+..-..+- .  +  -..+.|+|...         +|+.-.....=-+++++  +.+....++ -.+-|.|.+|
T Consensus        94 ~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~---------iL~VLT~~dvSV~~sV~~d~srVkaDi~-~~G~IhCACW  163 (671)
T PF15390_consen   94 TERNKLLMSQTCEIREPFPVLPQGCVWHPKKA---------ILTVLTARDVSVLPSVHCDSSRVKADIK-TSGLIHCACW  163 (671)
T ss_pred             cccccceeeeeeeccCCcccCCCcccccCCCc---------eEEEEecCceeEeeeeeeCCceEEEecc-CCceEEEEEe
Confidence              222221111000 0  0  12345666432         33333333333345554  233444454 3567999999


Q ss_pred             cCCCCEEEEEeCC-CcEEEEecCC
Q 008496          500 SPTGEYLASGSLD-KSMHIWSLKE  522 (563)
Q Consensus       500 spdg~~lasgs~d-g~v~iw~~~~  522 (563)
                      .+||+.|+.+-.. =.-+|||-..
T Consensus       164 T~DG~RLVVAvGSsLHSyiWd~~q  187 (671)
T PF15390_consen  164 TKDGQRLVVAVGSSLHSYIWDSAQ  187 (671)
T ss_pred             cCcCCEEEEEeCCeEEEEEecCch
Confidence            9999888765433 3467888543

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=94.79  E-value=0.02  Score=60.55  Aligned_cols=113  Identities=18%  Similarity=0.262  Sum_probs=63.6

Q ss_pred             ECCCCCEEEEEeCCCcEEEEeCC-----CCceeeeecccCC-CEEEEEEccCCCCC-CCCCCcEEEEEEeCCCeEEEEeC
Q 008496          406 WDPTGSLLASCSDDVTAKIWNMK-----QDKYVHDLREHSK-EIYTIRWSPTGSGT-NNPNQQLILASASFDSTVKLWDV  478 (563)
Q Consensus       406 ~~~~~~~las~s~dg~i~iwd~~-----~~~~~~~~~~~~~-~i~~~~~~p~~~~~-~~~~~~~~l~s~s~dg~i~iwd~  478 (563)
                      .+|||+.||+++.||.++.|.+.     ..++.+..+.|.+ +-.|..+....... ..+.-.+.+-+...+..+++|..
T Consensus       243 lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~  322 (1283)
T KOG1916|consen  243 LSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAE  322 (1283)
T ss_pred             eCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeec
Confidence            79999999999999999988753     3345566666763 32222222211110 11112233444455667999987


Q ss_pred             CCCeEEEEecCCCCCEEEEEEcCCCCE------------EEEEeCCCcEEEEecC
Q 008496          479 ELGKLLYSLNGHREPVYSLAFSPTGEY------------LASGSLDKSMHIWSLK  521 (563)
Q Consensus       479 ~~~~~~~~~~~h~~~i~~l~~spdg~~------------lasgs~dg~v~iw~~~  521 (563)
                      ...+|+..+  .-..|..+. -+||..            +++-+.++.|.+|.-+
T Consensus       323 a~w~Cll~~--~~d~v~iV~-p~~~~v~~~~~~~~~~~~~v~r~v~~~i~~~qn~  374 (1283)
T KOG1916|consen  323 APWQCLLDK--LIDGVQIVG-PHDGEVTDLSMCQWMTTRLVSRSVDGTIKIWQNR  374 (1283)
T ss_pred             cchhhhhhh--cccceEeec-CCCccccchhhhHHHHHHHHHhhhHHHHHHhhcc
Confidence            776766221  223344444 333421            3445667888888643

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=94.73  E-value=3.7  Score=38.39  Aligned_cols=179  Identities=14%  Similarity=0.139  Sum_probs=105.4

Q ss_pred             EEEEEeCCCCCEEEEeeCCC--cEEEEECCCCceeEEeeecccCe-EEEecCCCceEEEEeCCCeEEEEEcCCCcceeee
Q 008496          318 IFSLKWNKKGDYLLTGSCDK--TAIVWDVKTEEWKQQFEFHSGPT-LDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTF  394 (563)
Q Consensus       318 V~~l~~~~~~~~l~s~s~D~--~v~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~  394 (563)
                      .-++.|..+|..+-+.+.-|  .|+.+|+.+++..+.......-. -.+...++..+...=.++..++||..+-+++.++
T Consensus        47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~~~~f~yd~~tl~~~~~~  126 (264)
T PF05096_consen   47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWKEGTGFVYDPNTLKKIGTF  126 (264)
T ss_dssp             EEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESSSSEEEEEETTTTEEEEEE
T ss_pred             CccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEecCCeEEEEccccceEEEEE
Confidence            34677777787777877766  68999999998776654432110 1122223444444456677888998888777777


Q ss_pred             cCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeccc--C---CCEEEEEEccCCCCCCCCCCcEEEEEEeC
Q 008496          395 AGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREH--S---KEIYTIRWSPTGSGTNNPNQQLILASASF  469 (563)
Q Consensus       395 ~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~--~---~~i~~~~~~p~~~~~~~~~~~~~l~s~s~  469 (563)
                      . ..++=..++.  +++.|+.......+.++|..+.+....+...  .   ..+.-+.|. +|         .+.|-.=.
T Consensus       127 ~-y~~EGWGLt~--dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G---------~IyANVW~  193 (264)
T PF05096_consen  127 P-YPGEGWGLTS--DGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NG---------KIYANVWQ  193 (264)
T ss_dssp             E--SSS--EEEE--CSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TT---------EEEEEETT
T ss_pred             e-cCCcceEEEc--CCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cC---------EEEEEeCC
Confidence            5 2345556663  5555655555668999998877665554322  1   233445554 22         24555555


Q ss_pred             CCeEEEEeCCCCeEEEEecC------------C---CCCEEEEEEcCCCC-EEEEE
Q 008496          470 DSTVKLWDVELGKLLYSLNG------------H---REPVYSLAFSPTGE-YLASG  509 (563)
Q Consensus       470 dg~i~iwd~~~~~~~~~~~~------------h---~~~i~~l~~spdg~-~lasg  509 (563)
                      ...|..-|..+|+++..+.-            +   ..-.+.|||.|... +++||
T Consensus       194 td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG  249 (264)
T PF05096_consen  194 TDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG  249 (264)
T ss_dssp             SSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred             CCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence            66777789999988776521            1   23468899988765 45555

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=94.65  E-value=2.5  Score=45.03  Aligned_cols=185  Identities=15%  Similarity=0.183  Sum_probs=94.0

Q ss_pred             CCEEEEeeCC------CcEEEEECCCCceeEEeeeccc-CeEEEecCCCceEEEEeCC-C-----eEEEEEcCCCc--ce
Q 008496          327 GDYLLTGSCD------KTAIVWDVKTEEWKQQFEFHSG-PTLDVDWRNNVSFATSSTD-N-----MIYVCKIGENR--PI  391 (563)
Q Consensus       327 ~~~l~s~s~D------~~v~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~d-~-----~i~~~~~~~~~--~~  391 (563)
                      +..++.|+.+      .++..+|+.++.|......... ....+...++..+++++.+ +     .+..||...++  .+
T Consensus       285 ~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~  364 (571)
T KOG4441|consen  285 GKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPV  364 (571)
T ss_pred             CeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEECCEEEEEccccCCCcccceEEEecCCCCceecc
Confidence            3445555555      4678889888877654333221 2334445566778888887 3     45566665443  11


Q ss_pred             eeecCCCcceeEEEECCCCCEEEEEeCCCc-----EEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEE
Q 008496          392 KTFAGHQGEVNCVKWDPTGSLLASCSDDVT-----AKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILAS  466 (563)
Q Consensus       392 ~~~~~h~~~i~~~~~~~~~~~las~s~dg~-----i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s  466 (563)
                      ..+...........  -+|.+.|.|+.||.     +..||..+.+.-..-. .........-..-       + ..+.+.
T Consensus       365 a~M~~~R~~~~v~~--l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~-m~~~r~~~gv~~~-------~-g~iYi~  433 (571)
T KOG4441|consen  365 APMNTKRSDFGVAV--LDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAP-MLTRRSGHGVAVL-------G-GKLYII  433 (571)
T ss_pred             CCccCccccceeEE--ECCEEEEEeccccccccccEEEecCCCCcccccCC-CCcceeeeEEEEE-------C-CEEEEE
Confidence            11111111111122  26888899999874     6678876654321110 0001111111110       1 124556


Q ss_pred             EeCCC------eEEEEeCCCCeE--EEEecCCCCCEEEEEEcCCCCEEEEEeCCCc-----EEEEecCCCe
Q 008496          467 ASFDS------TVKLWDVELGKL--LYSLNGHREPVYSLAFSPTGEYLASGSLDKS-----MHIWSLKEGK  524 (563)
Q Consensus       467 ~s~dg------~i~iwd~~~~~~--~~~~~~h~~~i~~l~~spdg~~lasgs~dg~-----v~iw~~~~~~  524 (563)
                      |+.++      ++..||..+++-  +..+..-+.......  -++..+|.||.|+.     |..||..+.+
T Consensus       434 GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~--~~~~iYvvGG~~~~~~~~~VE~ydp~~~~  502 (571)
T KOG4441|consen  434 GGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAV--LNGKIYVVGGFDGTSALSSVERYDPETNQ  502 (571)
T ss_pred             cCcCCCccccceEEEEcCCCCceeecCCcccccccceEEE--ECCEEEEECCccCCCccceEEEEcCCCCc
Confidence            66544      466777765542  222221111122222  26778888888763     7778877654

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.33  E-value=0.43  Score=52.38  Aligned_cols=136  Identities=13%  Similarity=0.116  Sum_probs=80.7

Q ss_pred             CCEEEEEeCCCCCEEEE--eeCCCcEEEEECCCCceeE-----Eeeec------ccCeEEEecCCC--ceEEEEeCCCeE
Q 008496          316 GPIFSLKWNKKGDYLLT--GSCDKTAIVWDVKTEEWKQ-----QFEFH------SGPTLDVDWRNN--VSFATSSTDNMI  380 (563)
Q Consensus       316 ~~V~~l~~~~~~~~l~s--~s~D~~v~iwd~~~~~~~~-----~~~~~------~~~~~~~~~~~~--~~~~~~~~d~~i  380 (563)
                      -++..+..+++++..++  .+.+-.|..||+++.....     .+..+      ..-..++.|...  ..++.+..|+.|
T Consensus       101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl  180 (1405)
T KOG3630|consen  101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL  180 (1405)
T ss_pred             ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence            35555666677655433  3334478899987543211     11111      112355667654  356778888888


Q ss_pred             EEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCC--ceeeeecc-cCCCEEEEEEccC
Q 008496          381 YVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD--KYVHDLRE-HSKEIYTIRWSPT  451 (563)
Q Consensus       381 ~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~--~~~~~~~~-~~~~i~~~~~~p~  451 (563)
                      .+..+....+...--.-....+|++|+|.|+.++.|-..|++.-|-..-.  +.+..... ....|.+|+|...
T Consensus       181 ~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp~~e~yrvl~v~Wl~t  254 (1405)
T KOG3630|consen  181 RVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPPVEENYRVLSVTWLST  254 (1405)
T ss_pred             hhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecccceeecccCCCcCCCcceeEEEEecc
Confidence            88777554332211123456889999999999999999999988864322  11111111 1356888888653

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=94.21  E-value=5.6  Score=38.35  Aligned_cols=106  Identities=19%  Similarity=0.193  Sum_probs=55.1

Q ss_pred             ccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC-eEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEE
Q 008496          438 EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG-KLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMH  516 (563)
Q Consensus       438 ~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~  516 (563)
                      .-.+.+..+.-+++|.         ++++++.-....-||--.. =..+.. .-...|.++.|+|++...+++ ..|.|+
T Consensus       142 ~~~gs~~~~~r~~dG~---------~vavs~~G~~~~s~~~G~~~w~~~~r-~~~~riq~~gf~~~~~lw~~~-~Gg~~~  210 (302)
T PF14870_consen  142 ETSGSINDITRSSDGR---------YVAVSSRGNFYSSWDPGQTTWQPHNR-NSSRRIQSMGFSPDGNLWMLA-RGGQIQ  210 (302)
T ss_dssp             S----EEEEEE-TTS----------EEEEETTSSEEEEE-TT-SS-EEEE---SSS-EEEEEE-TTS-EEEEE-TTTEEE
T ss_pred             CCcceeEeEEECCCCc---------EEEEECcccEEEEecCCCccceEEcc-CccceehhceecCCCCEEEEe-CCcEEE
Confidence            3446677777778775         5666654444556765321 122222 235689999999998876654 778887


Q ss_pred             EEecCCCeeEEEEe--------cCCCEEEEEEcCCCCEEEEEECCCeEE
Q 008496          517 IWSLKEGKIVKTYT--------GNGGIFEVCWNKEGDKIAACFANHTVC  557 (563)
Q Consensus       517 iw~~~~~~~~~~~~--------~~~~i~~l~w~~~g~~la~~~~~~~v~  557 (563)
                      +=+...  -..++.        ..-++.+++|.+++...|+|. +|.+.
T Consensus       211 ~s~~~~--~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l~  256 (302)
T PF14870_consen  211 FSDDPD--DGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGTLL  256 (302)
T ss_dssp             EEE-TT--EEEEE---B-TTSS--S-EEEEEESSSS-EEEEES-TT-EE
T ss_pred             EccCCC--CccccccccCCcccCceeeEEEEecCCCCEEEEeC-CccEE
Confidence            766211  122221        123489999999988887774 44443

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=94.02  E-value=1.2  Score=48.52  Aligned_cols=92  Identities=15%  Similarity=0.159  Sum_probs=52.2

Q ss_pred             CEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecC
Q 008496          317 PIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAG  396 (563)
Q Consensus       317 ~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~  396 (563)
                      .|..|..||+|.+|+..|..+.+.+.=.+.......+......+.+                  +.+.++..   .....
T Consensus        86 ~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~C------------------rt~~v~~~---~~~~~  144 (717)
T PF10168_consen   86 EVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINC------------------RTVPVDER---FFTSN  144 (717)
T ss_pred             eEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeE------------------EEEEechh---hccCC
Confidence            5788889999999888877655444322221101111111111111                  11111110   00123


Q ss_pred             CCcceeEEEECCC---CCEEEEEeCCCcEEEEeCCC
Q 008496          397 HQGEVNCVKWDPT---GSLLASCSDDVTAKIWNMKQ  429 (563)
Q Consensus       397 h~~~i~~~~~~~~---~~~las~s~dg~i~iwd~~~  429 (563)
                      +...|..+.|+|.   +..|+.-..|+++|+||+..
T Consensus       145 ~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~  180 (717)
T PF10168_consen  145 SSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISD  180 (717)
T ss_pred             CCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCC
Confidence            3457889999997   47888999999999999864

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=93.96  E-value=5.4  Score=37.28  Aligned_cols=178  Identities=14%  Similarity=0.139  Sum_probs=94.8

Q ss_pred             EEEEECCCCCEEEEeeCC--CcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEEeCCC
Q 008496          219 CACAWSPAGSLLASGSGD--STARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDG  296 (563)
Q Consensus       219 ~~~~~sp~~~~latgs~D--~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~dg  296 (563)
                      ..+.|..+|.++-+.|.-  +.++.+|+.+++....           ..+....-.  ..++-+    ++++..-.-.++
T Consensus        48 QGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~-----------~~l~~~~Fg--EGit~~----~d~l~qLTWk~~  110 (264)
T PF05096_consen   48 QGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQS-----------VPLPPRYFG--EGITIL----GDKLYQLTWKEG  110 (264)
T ss_dssp             EEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEE-----------EE-TTT--E--EEEEEE----TTEEEEEESSSS
T ss_pred             ccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEE-----------EECCccccc--eeEEEE----CCEEEEEEecCC
Confidence            357787788888887754  4899999987653211           011100000  011111    223333345578


Q ss_pred             eEEEEEcCC-ceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeeccc-----CeEEEecCCCce
Q 008496          297 QARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSG-----PTLDVDWRNNVS  370 (563)
Q Consensus       297 ~i~vw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~-----~~~~~~~~~~~~  370 (563)
                      .+.+||.+. +...++. ..+.=++|+  .+++.|+.......+.++|+.+.+....+.....     ....+.|.+...
T Consensus       111 ~~f~yd~~tl~~~~~~~-y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i~G~I  187 (264)
T PF05096_consen  111 TGFVYDPNTLKKIGTFP-YPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYINGKI  187 (264)
T ss_dssp             EEEEEETTTTEEEEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEETTEE
T ss_pred             eEEEEccccceEEEEEe-cCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEEcCEE
Confidence            889999864 3333442 334557887  4567777777777899999988776665543321     234455555555


Q ss_pred             EEEEeCCCeEEEEEcCCCcceeeec-----------C----CCcceeEEEECCCCCE-EEEE
Q 008496          371 FATSSTDNMIYVCKIGENRPIKTFA-----------G----HQGEVNCVKWDPTGSL-LASC  416 (563)
Q Consensus       371 ~~~~~~d~~i~~~~~~~~~~~~~~~-----------~----h~~~i~~~~~~~~~~~-las~  416 (563)
                      +|-.=....|...|..+++.+..+.           .    ...-.+.|+|+|.... ++||
T Consensus       188 yANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG  249 (264)
T PF05096_consen  188 YANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG  249 (264)
T ss_dssp             EEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred             EEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence            5544444555555655555443321           0    1345789999887655 4555

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.87  E-value=5.7  Score=37.18  Aligned_cols=100  Identities=16%  Similarity=0.147  Sum_probs=60.1

Q ss_pred             EEEECCCC-CEEEEeeCCC-cEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEEeCC--
Q 008496          220 ACAWSPAG-SLLASGSGDS-TARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYD--  295 (563)
Q Consensus       220 ~~~~sp~~-~~latgs~D~-~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~d--  295 (563)
                      .++|+|.. .-++.+-.=| ...++|..........     ....-+|+-++          =.|||||.+|...-.|  
T Consensus        72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~-----~s~~~RHfyGH----------Gvfs~dG~~LYATEndfd  136 (366)
T COG3490          72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTL-----VSQEGRHFYGH----------GVFSPDGRLLYATENDFD  136 (366)
T ss_pred             CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEE-----ecccCceeecc----------cccCCCCcEEEeecCCCC
Confidence            57788863 4455554444 4667776654321000     00011222222          1589999998876444  


Q ss_pred             ---CeEEEEEcCCce--eEeeccCCCCEEEEEeCCCCCEEEEee
Q 008496          296 ---GQARIWSTNGDL--KCTLSKHKGPIFSLKWNKKGDYLLTGS  334 (563)
Q Consensus       296 ---g~i~vw~~~~~~--~~~~~~h~~~V~~l~~~~~~~~l~s~s  334 (563)
                         |.|-|||.....  ...+..|.-.-..+.|.+||..++.+.
T Consensus       137 ~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvan  180 (366)
T COG3490         137 PNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVAN  180 (366)
T ss_pred             CCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeC
Confidence               789999976432  335677776667889999999887764

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.86  E-value=2.3  Score=39.69  Aligned_cols=129  Identities=19%  Similarity=0.198  Sum_probs=72.9

Q ss_pred             EEEECCCCCE-EEEEeCCCcEEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCe-EEEEeCCC
Q 008496          403 CVKWDPTGSL-LASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDST-VKLWDVEL  480 (563)
Q Consensus       403 ~~~~~~~~~~-las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~-i~iwd~~~  480 (563)
                      +....+||++ +++.+.+|.+.. .+.          -......+.++|...        ..++-+-.-|+ ..++|...
T Consensus        40 saf~~~dgs~g~a~~~eaGk~v~-~~~----------lpaR~Hgi~~~p~~~--------ravafARrPGtf~~vfD~~~  100 (366)
T COG3490          40 SAFDARDGSFGAATLSEAGKIVF-ATA----------LPARGHGIAFHPALP--------RAVAFARRPGTFAMVFDPNG  100 (366)
T ss_pred             eeeeccCCceeEEEEccCCceee-eee----------cccccCCeecCCCCc--------ceEEEEecCCceEEEECCCC
Confidence            3444567765 556666766531 110          112223345555432        12333333333 45677776


Q ss_pred             CeEEEEecCCCCC--EEEEEEcCCCCEEEEEeCC-----CcEEEEecCCC-eeEEEEecCC-CEEEEEEcCCCCEEEEE
Q 008496          481 GKLLYSLNGHREP--VYSLAFSPTGEYLASGSLD-----KSMHIWSLKEG-KIVKTYTGNG-GIFEVCWNKEGDKIAAC  550 (563)
Q Consensus       481 ~~~~~~~~~h~~~--i~~l~~spdg~~lasgs~d-----g~v~iw~~~~~-~~~~~~~~~~-~i~~l~w~~~g~~la~~  550 (563)
                      .+.+.++...+..  --.-+|||||.+|...-.|     |.|-|||.+.+ ..+..|...+ +.-++.|.+||..|+++
T Consensus       101 ~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvva  179 (366)
T COG3490         101 AQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVA  179 (366)
T ss_pred             CcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEe
Confidence            6555444321111  1123699999998754332     68999998753 3455565543 45789999999999987

>PHA03098 kelch-like protein; Provisional

Probab=93.74  E-value=2.5  Score=44.88  Aligned_cols=93  Identities=16%  Similarity=0.164  Sum_probs=42.6

Q ss_pred             cEEEEECCCCceeEEeeeccc-CeEEEecCCCceEEEEeCCC-----eEEEEEcCCCcc--eeeecCCCcceeEEEECCC
Q 008496          338 TAIVWDVKTEEWKQQFEFHSG-PTLDVDWRNNVSFATSSTDN-----MIYVCKIGENRP--IKTFAGHQGEVNCVKWDPT  409 (563)
Q Consensus       338 ~v~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~d~-----~i~~~~~~~~~~--~~~~~~h~~~i~~~~~~~~  409 (563)
                      .+..||+.+.+|...-..... ....+...++..++.++.++     .+..|+..+.+=  +..+.........+.  -+
T Consensus       312 ~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~--~~  389 (534)
T PHA03098        312 SVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVN--VN  389 (534)
T ss_pred             cEEEEeCCCCeeeECCCCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEE--EC
Confidence            467788888777543221111 01122233455566666442     355565544321  111110111111122  25


Q ss_pred             CCEEEEEeCC------CcEEEEeCCCCce
Q 008496          410 GSLLASCSDD------VTAKIWNMKQDKY  432 (563)
Q Consensus       410 ~~~las~s~d------g~i~iwd~~~~~~  432 (563)
                      +++.+.|+.+      ..+..||..+.+.
T Consensus       390 ~~iYv~GG~~~~~~~~~~v~~yd~~t~~W  418 (534)
T PHA03098        390 NLIYVIGGISKNDELLKTVECFSLNTNKW  418 (534)
T ss_pred             CEEEEECCcCCCCcccceEEEEeCCCCee
Confidence            6777777732      3577888776544

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=93.74  E-value=0.24  Score=31.58  Aligned_cols=31  Identities=26%  Similarity=0.321  Sum_probs=26.4

Q ss_pred             CCEEEEEEcCCC---CEEEEEeCCCcEEEEecCC
Q 008496          492 EPVYSLAFSPTG---EYLASGSLDKSMHIWSLKE  522 (563)
Q Consensus       492 ~~i~~l~~spdg---~~lasgs~dg~v~iw~~~~  522 (563)
                      +.|.++.|||..   .+||.+-.-|.|.|+|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            368899999854   5889888889999999985

It contains a characteristic DLL sequence motif.

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.71  E-value=1.6  Score=43.34  Aligned_cols=132  Identities=16%  Similarity=0.217  Sum_probs=84.3

Q ss_pred             CCCEEEEEeCCCeEEEEEcCC---ceeEee-ccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeE----Eeeec
Q 008496          285 EGTLLATGSYDGQARIWSTNG---DLKCTL-SKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQ----QFEFH  356 (563)
Q Consensus       285 ~g~~l~sg~~dg~i~vw~~~~---~~~~~~-~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~----~~~~~  356 (563)
                      |.+..+.+...|.+.=|-+.|   .....+ ...+++|.+++|++|.+.|+.--.|++|.+.+....+...    .....
T Consensus        32 DaNkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k  111 (657)
T KOG2377|consen   32 DANKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTK  111 (657)
T ss_pred             cCcceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccC
Confidence            444444555566666666443   222222 2356799999999999999999999999999874333222    22233


Q ss_pred             ccCeEEEecCCCceEEEEeCCCeEEEEEcC-CCcceeeecCCCcceeEEEECCCCCEEEEEe
Q 008496          357 SGPTLDVDWRNNVSFATSSTDNMIYVCKIG-ENRPIKTFAGHQGEVNCVKWDPTGSLLASCS  417 (563)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~-~~~~~~~~~~h~~~i~~~~~~~~~~~las~s  417 (563)
                      ...+..+.|.++..+|...+.|. -+|... ..+.++..+.|.-.|+=-.|.++.+.+.-|+
T Consensus       112 ~~~IlGF~W~~s~e~A~i~~~G~-e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t  172 (657)
T KOG2377|consen  112 NANILGFCWTSSTEIAFITDQGI-EFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLST  172 (657)
T ss_pred             cceeEEEEEecCeeEEEEecCCe-EEEEEchhhhhhhhhhhcccCccEEEEccccceEeeec
Confidence            44588899998887777666654 233322 2334455566777788788888877654443

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=93.56  E-value=0.36  Score=52.93  Aligned_cols=152  Identities=16%  Similarity=0.134  Sum_probs=89.8

Q ss_pred             ceEEEEECCCCCE--EEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCC-CEEEEEe
Q 008496          217 EVCACAWSPAGSL--LASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG-TLLATGS  293 (563)
Q Consensus       217 ~V~~~~~sp~~~~--latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g-~~l~sg~  293 (563)
                      .|..+..++|++.  ++..+.+-.|..+|+..-......+..++..    +  ........-+.++.|+|.- ...+...
T Consensus       102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~----s--~ts~ek~vf~~~~~wnP~vp~n~av~l  175 (1405)
T KOG3630|consen  102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKN----S--ATSFEKPVFQLKNVWNPLVPLNSAVDL  175 (1405)
T ss_pred             cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhcccccc----c--cchhccccccccccccCCccchhhhhc
Confidence            3455556677653  3344455578889986422111111111100    0  0011223446788999853 3456678


Q ss_pred             CCCeEEEEEcCCceeEe-eccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEee---e-cccCeEEEecCCC
Q 008496          294 YDGQARIWSTNGDLKCT-LSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFE---F-HSGPTLDVDWRNN  368 (563)
Q Consensus       294 ~dg~i~vw~~~~~~~~~-~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~---~-~~~~~~~~~~~~~  368 (563)
                      .|+.|++..+....... --..+..+++++|+|.|++++.|-..|++..|-..-. .+..+.   . ....+.++.|...
T Consensus       176 ~dlsl~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~le-ik~~ip~Pp~~e~yrvl~v~Wl~t  254 (1405)
T KOG3630|consen  176 SDLSLRVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLE-IKSEIPEPPVEENYRVLSVTWLST  254 (1405)
T ss_pred             cccchhhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecccc-eeecccCCCcCCCcceeEEEEecc
Confidence            88999988765322211 1134567899999999999999999999999975432 222111   1 1346889999988


Q ss_pred             ceEEEEe
Q 008496          369 VSFATSS  375 (563)
Q Consensus       369 ~~~~~~~  375 (563)
                      ..|+..-
T Consensus       255 ~eflvvy  261 (1405)
T KOG3630|consen  255 QEFLVVY  261 (1405)
T ss_pred             eeEEEEe
Confidence            7776543

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=93.47  E-value=8.5  Score=37.94  Aligned_cols=49  Identities=16%  Similarity=0.380  Sum_probs=34.7

Q ss_pred             eEEEEECCCCCEEEEEeCCCeEEEEEcCCceeE---ee----ccCCCCEEEEEeCCC
Q 008496          277 VTTLDWNGEGTLLATGSYDGQARIWSTNGDLKC---TL----SKHKGPIFSLKWNKK  326 (563)
Q Consensus       277 V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~~~---~~----~~h~~~V~~l~~~~~  326 (563)
                      -+.|+|.|+|+++++ ...|.|++++.++....   .+    .........++++|+
T Consensus         4 P~~~a~~pdG~l~v~-e~~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~   59 (331)
T PF07995_consen    4 PRSMAFLPDGRLLVA-ERSGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPD   59 (331)
T ss_dssp             EEEEEEETTSCEEEE-ETTTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TT
T ss_pred             ceEEEEeCCCcEEEE-eCCceEEEEeCCCcCcceecccccccccccCCcccceeccc
Confidence            578999999988765 56999999996665422   12    233456799999995

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=93.27  E-value=9.2  Score=37.71  Aligned_cols=54  Identities=15%  Similarity=0.157  Sum_probs=34.5

Q ss_pred             EEEEEeCCCeEEEEeCCCCeEEE---E-ecCCCCCEEEEEEcCCCCEEEEEeCCCcEE
Q 008496          463 ILASASFDSTVKLWDVELGKLLY---S-LNGHREPVYSLAFSPTGEYLASGSLDKSMH  516 (563)
Q Consensus       463 ~l~s~s~dg~i~iwd~~~~~~~~---~-~~~h~~~i~~l~~spdg~~lasgs~dg~v~  516 (563)
                      ++++.-..+.|....+..+..+.   . +......+..+++.|||.++++-+.+|.|.
T Consensus       273 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy  330 (331)
T PF07995_consen  273 LFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY  330 (331)
T ss_dssp             EEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred             EEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence            45555445677777766443322   2 233445799999999999988888888764

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=93.27  E-value=7.4  Score=36.65  Aligned_cols=153  Identities=16%  Similarity=0.242  Sum_probs=86.1

Q ss_pred             CCeEEEEECCCCCEEEEEe---CCCeEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEE-CCCCcee
Q 008496          275 KDVTTLDWNGEGTLLATGS---YDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWD-VKTEEWK  350 (563)
Q Consensus       275 ~~V~~l~~s~~g~~l~sg~---~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd-~~~~~~~  350 (563)
                      ..+...+++++|+.++...   ....++++...+.....+.+  ..++.-.|++++...+....+...+++. ...+...
T Consensus        24 ~~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g--~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~  101 (253)
T PF10647_consen   24 YDVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTG--GSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE  101 (253)
T ss_pred             ccccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeeccC--CccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence            3688899999999877665   33466666665555444433  2667778999876666655555555553 2222111


Q ss_pred             EEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEe---CCCcEEEEeC
Q 008496          351 QQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCS---DDVTAKIWNM  427 (563)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s---~dg~i~iwd~  427 (563)
                      .         ..++|                             ..-.+.|..++++|||..+|.-.   .++.|.+=-+
T Consensus       102 ~---------~~v~~-----------------------------~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V  143 (253)
T PF10647_consen  102 P---------VEVDW-----------------------------PGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGV  143 (253)
T ss_pred             e---------EEecc-----------------------------cccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEE
Confidence            0         00010                             00111789999999999877655   2455655432


Q ss_pred             C---CC--c----eeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEE
Q 008496          428 K---QD--K----YVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKL  475 (563)
Q Consensus       428 ~---~~--~----~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~i  475 (563)
                      .   .+  .    .+.........+..+.|.+++.        ++++....++.+..
T Consensus       144 ~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~--------L~V~~~~~~~~~~~  192 (253)
T PF10647_consen  144 VRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDST--------LVVLGRSAGGPVVR  192 (253)
T ss_pred             EeCCCCCcceeccceEecccccCcceeeeecCCCE--------EEEEeCCCCCceeE
Confidence            1   22  1    1111122345788999998764        34444444543433

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=93.09  E-value=3.3  Score=43.94  Aligned_cols=110  Identities=14%  Similarity=0.256  Sum_probs=69.3

Q ss_pred             eEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeec-ccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCC-
Q 008496          402 NCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLR-EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVE-  479 (563)
Q Consensus       402 ~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~-~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~-  479 (563)
                      .-+.-+.-++..+.-+...++.|||.+.+....+-. ...+.|..+.|...+.      .+.+| +.++...|.++.-. 
T Consensus        33 ~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d------~qsiL-aVGf~~~v~l~~Q~R  105 (631)
T PF12234_consen   33 SLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPD------GQSIL-AVGFPHHVLLYTQLR  105 (631)
T ss_pred             ceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCC------CCEEE-EEEcCcEEEEEEccc
Confidence            344445555555555556679999999887543322 4567899999986543      33444 55677888888431 


Q ss_pred             ----CC----eEEEE--ecCCC-CCEEEEEEcCCCCEEEEEeCCCcEEEEec
Q 008496          480 ----LG----KLLYS--LNGHR-EPVYSLAFSPTGEYLASGSLDKSMHIWSL  520 (563)
Q Consensus       480 ----~~----~~~~~--~~~h~-~~i~~l~~spdg~~lasgs~dg~v~iw~~  520 (563)
                          +.    ..+..  +..|+ .+|.+..|.++|.+++.+|  +.+.|++-
T Consensus       106 ~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk  155 (631)
T PF12234_consen  106 YDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDK  155 (631)
T ss_pred             hhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECC
Confidence                11    12222  23343 5799999999998776543  46888874

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=92.89  E-value=4  Score=38.43  Aligned_cols=115  Identities=9%  Similarity=0.271  Sum_probs=78.1

Q ss_pred             ccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEec--CCCCCEEEEEEcCCCCEEEEEeCCCcE
Q 008496          438 EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLN--GHREPVYSLAFSPTGEYLASGSLDKSM  515 (563)
Q Consensus       438 ~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--~h~~~i~~l~~spdg~~lasgs~dg~v  515 (563)
                      +-...+.++.|+|+..         .|.+......-.+|=...|..+.++.  +-.. --+|.|.-+|+|.++--.++.+
T Consensus        83 g~~~nvS~LTynp~~r---------tLFav~n~p~~iVElt~~GdlirtiPL~g~~D-pE~Ieyig~n~fvi~dER~~~l  152 (316)
T COG3204          83 GETANVSSLTYNPDTR---------TLFAVTNKPAAIVELTKEGDLIRTIPLTGFSD-PETIEYIGGNQFVIVDERDRAL  152 (316)
T ss_pred             cccccccceeeCCCcc---------eEEEecCCCceEEEEecCCceEEEecccccCC-hhHeEEecCCEEEEEehhcceE
Confidence            3445588999999865         34444444555566555688877653  3222 3567888889998888888999


Q ss_pred             EEEecCCCeeEEE----------Eec-CCCEEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496          516 HIWSLKEGKIVKT----------YTG-NGGIFEVCWNKEGDKIAACFANHTVCVLDFR  562 (563)
Q Consensus       516 ~iw~~~~~~~~~~----------~~~-~~~i~~l~w~~~g~~la~~~~~~~v~v~~~~  562 (563)
                      .++.+.....+..          +.. +.+.-.++|+|....|.++-...-+.||-+.
T Consensus       153 ~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~  210 (316)
T COG3204         153 YLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVT  210 (316)
T ss_pred             EEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEe
Confidence            9998876532211          112 5567789999999998888776677777553

>COG5290 IkappaB kinase complex, IKAP component [Transcription]

Probab=92.87  E-value=1.7  Score=46.11  Aligned_cols=133  Identities=16%  Similarity=0.307  Sum_probs=72.6

Q ss_pred             EEEEECCCCCEEEEEeCC----CeEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEEEeeCCC-----cEEEEECCCCc
Q 008496          278 TTLDWNGEGTLLATGSYD----GQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDK-----TAIVWDVKTEE  348 (563)
Q Consensus       278 ~~l~~s~~g~~l~sg~~d----g~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~-----~v~iwd~~~~~  348 (563)
                      +.+.|-.|..+.+.+...    ..+|+|...|.+-..-...++.-..+.|-|+|..++|-..||     .|+++.. +|-
T Consensus       205 ~~i~wrgD~~y~~v~r~Ee~prra~rvysreg~lds~sep~~g~e~~LSWkpqgS~~ati~td~~~~S~~ViFfEr-NGL  283 (1243)
T COG5290         205 KIIFWRGDTEYNLVGRSEERPRRAFRVYSREGQLDSASEPVTGMEHQLSWKPQGSKYATIGTDGCSTSESVIFFER-NGL  283 (1243)
T ss_pred             eEEEEccCcceeeecchhcccccceeeeccccccccccCCcccchhccccccCCceeeeeccCCCCCcceEEEEcc-CCc
Confidence            456788888888887654    467888877765443333444445689999999999987665     3555542 221


Q ss_pred             eeEEeeec---ccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCC
Q 008496          349 WKQQFEFH---SGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGS  411 (563)
Q Consensus       349 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~  411 (563)
                      ....|...   .......+|.-...+......+.+.+|..++-.-.....-.-..+.-+.|+|...
T Consensus       284 rHGef~lr~~~dEk~~~~~wn~~s~vlav~~~n~~~lwttkNyhWYLK~e~~ip~~s~vkwhpe~~  349 (1243)
T COG5290         284 RHGEFDLRVGCDEKAFLENWNLLSTVLAVAEGNLLKLWTTKNYHWYLKVERQIPGISYVKWHPEEK  349 (1243)
T ss_pred             ccCCccccCCchhhhhhhhhhHHHHHHHHhhcceEEEEEccceEEEEEEeecCCCcceeeeccccC
Confidence            11112111   1123344565444444445566777776544211111111122355677887644

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=92.78  E-value=18  Score=39.89  Aligned_cols=150  Identities=14%  Similarity=0.190  Sum_probs=84.0

Q ss_pred             CCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEE-EEEE--ccCCC--CCCCC--CCcEEEEEEeC----------CCe
Q 008496          410 GSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIY-TIRW--SPTGS--GTNNP--NQQLILASASF----------DST  472 (563)
Q Consensus       410 ~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~-~~~~--~p~~~--~~~~~--~~~~~l~s~s~----------dg~  472 (563)
                      +..|+.++.|+.+.-.|.++++.+..+... +.+. ....  .+.+.  ....|  .+. .++.|+.          +|.
T Consensus       260 ~~rV~~~T~Dg~LiALDA~TGk~~W~fg~~-G~vdl~~~~g~~~~g~~~~ts~P~V~~g-~VIvG~~v~d~~~~~~~~G~  337 (764)
T TIGR03074       260 ARRIILPTSDARLIALDADTGKLCEDFGNN-GTVDLTAGMGTTPPGYYYPTSPPLVAGT-TVVIGGRVADNYSTDEPSGV  337 (764)
T ss_pred             CCEEEEecCCCeEEEEECCCCCEEEEecCC-CceeeecccCcCCCcccccccCCEEECC-EEEEEecccccccccCCCcE
Confidence            346777888999988999999887665321 1110 0000  00000  00000  011 2334432          689


Q ss_pred             EEEEeCCCCeEEEEecCC---------CC--------CE-EEEEEcCCCCEEEEEe------------------CCCcEE
Q 008496          473 VKLWDVELGKLLYSLNGH---------RE--------PV-YSLAFSPTGEYLASGS------------------LDKSMH  516 (563)
Q Consensus       473 i~iwd~~~~~~~~~~~~h---------~~--------~i-~~l~~spdg~~lasgs------------------~dg~v~  516 (563)
                      |+-+|+++|+.++.+..-         .+        .+ ..+++.|....+..+.                  ..+.|.
T Consensus       338 I~A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slv  417 (764)
T TIGR03074       338 IRAFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLV  417 (764)
T ss_pred             EEEEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEE
Confidence            999999999999876410         00        11 2244555443333211                  235677


Q ss_pred             EEecCCCeeEEEEec-CCC-----------EEEEEEcCCCC---EEEEEECCCeEEEEEee
Q 008496          517 IWSLKEGKIVKTYTG-NGG-----------IFEVCWNKEGD---KIAACFANHTVCVLDFR  562 (563)
Q Consensus       517 iw~~~~~~~~~~~~~-~~~-----------i~~l~w~~~g~---~la~~~~~~~v~v~~~~  562 (563)
                      -.|+++|++...++. +..           +.++. ..+|+   .|+.+..+|.+.++|-+
T Consensus       418 ALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~-~~~G~~~~~v~~~~K~G~~~vlDr~  477 (764)
T TIGR03074       418 ALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLP-DADGTTVPALVAPTKQGQIYVLDRR  477 (764)
T ss_pred             EEeCCCCceEEEecccCCccccccccCCceEEeee-cCCCcEeeEEEEECCCCEEEEEECC
Confidence            888899998887764 221           12332 12664   77888889999998853

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=92.77  E-value=6.4  Score=39.47  Aligned_cols=195  Identities=11%  Similarity=0.151  Sum_probs=91.0

Q ss_pred             CCEEEEee-CCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecc-ccc--CCCCeEEEEECCCCCEEEEEeCC------C
Q 008496          227 GSLLASGS-GDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGR-TNE--KSKDVTTLDWNGEGTLLATGSYD------G  296 (563)
Q Consensus       227 ~~~latgs-~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~V~~l~~s~~g~~l~sg~~d------g  296 (563)
                      .++|...+ ..+.|.|.|+.+....      |   ...+..... ...  .-..-.++.--|+|++++|+-.|      |
T Consensus        87 Rr~Li~PgL~SsrIyviD~~~dPr~------P---~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~G  157 (461)
T PF05694_consen   87 RRYLILPGLRSSRIYVIDTKTDPRK------P---RLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPG  157 (461)
T ss_dssp             S-EEEEEBTTT--EEEEE--S-TTS----------EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--
T ss_pred             CCcEEeeeeccCcEEEEECCCCCCC------C---ceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCC
Confidence            45677666 6778999998643211      1   111111110 000  00011222334688888886432      3


Q ss_pred             eEEEEEcCC-ceeEeeccC---CCCEEEEEeCCCCCEEEEeeC--------------------CCcEEEEECCCCceeEE
Q 008496          297 QARIWSTNG-DLKCTLSKH---KGPIFSLKWNKKGDYLLTGSC--------------------DKTAIVWDVKTEEWKQQ  352 (563)
Q Consensus       297 ~i~vw~~~~-~~~~~~~~h---~~~V~~l~~~~~~~~l~s~s~--------------------D~~v~iwd~~~~~~~~~  352 (563)
                      .+.+.|-++ .++......   ..--+.+-|.|..+.++|...                    -.++.+||+.+.+.++.
T Consensus       158 gf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~  237 (461)
T PF05694_consen  158 GFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQT  237 (461)
T ss_dssp             EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEE
T ss_pred             cEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeE
Confidence            556666542 222222221   223466778888888888653                    25799999999999998


Q ss_pred             eeeccc--CeEEEecCC----CceEEEEeCCCeEEEEEcC-CC----cceeeecC-----------------CCcceeEE
Q 008496          353 FEFHSG--PTLDVDWRN----NVSFATSSTDNMIYVCKIG-EN----RPIKTFAG-----------------HQGEVNCV  404 (563)
Q Consensus       353 ~~~~~~--~~~~~~~~~----~~~~~~~~~d~~i~~~~~~-~~----~~~~~~~~-----------------h~~~i~~~  404 (563)
                      +.....  .++.+.|..    ..-|+.+.....|+.|--. .+    +.+..+..                 -..-|+.|
T Consensus       238 idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI  317 (461)
T PF05694_consen  238 IDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDI  317 (461)
T ss_dssp             EES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------E
T ss_pred             EecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeE
Confidence            887543  356676642    3467777777777766542 21    11111111                 12347889


Q ss_pred             EECCCCCEEEEEe-CCCcEEEEeCCCC
Q 008496          405 KWDPTGSLLASCS-DDVTAKIWNMKQD  430 (563)
Q Consensus       405 ~~~~~~~~las~s-~dg~i~iwd~~~~  430 (563)
                      ..|.|.++|..+. .+|.||.||+...
T Consensus       318 ~iSlDDrfLYvs~W~~GdvrqYDISDP  344 (461)
T PF05694_consen  318 LISLDDRFLYVSNWLHGDVRQYDISDP  344 (461)
T ss_dssp             EE-TTS-EEEEEETTTTEEEEEE-SST
T ss_pred             EEccCCCEEEEEcccCCcEEEEecCCC
Confidence            9999999986555 4999999998643

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=92.77  E-value=7.4  Score=35.33  Aligned_cols=136  Identities=15%  Similarity=0.195  Sum_probs=77.3

Q ss_pred             cceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccCC--------CEEEEEEccCCCCCCCCCCcEEEEEEeCC
Q 008496          399 GEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSK--------EIYTIRWSPTGSGTNNPNQQLILASASFD  470 (563)
Q Consensus       399 ~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~--------~i~~~~~~p~~~~~~~~~~~~~l~s~s~d  470 (563)
                      ...+.-..+|+|++++-.-.|-.. +.....+.....+.+|+-        --..++|+.+        +..+...-+.+
T Consensus       109 nR~NDgkvdP~Gryy~GtMad~~~-~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d--------~K~fY~iDsln  179 (310)
T KOG4499|consen  109 NRLNDGKVDPDGRYYGGTMADFGD-DLEPIGGELYSWLAGHQVELIWNCVGISNGLAWDSD--------AKKFYYIDSLN  179 (310)
T ss_pred             cccccCccCCCCceeeeeeccccc-cccccccEEEEeccCCCceeeehhccCCcccccccc--------CcEEEEEccCc
Confidence            456667789999995432222111 111112222222233321        1234555432        33456667778


Q ss_pred             CeEEEEe--CCCC-----eEEEEecCC---CCC-EEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEec-CCCEEEE
Q 008496          471 STVKLWD--VELG-----KLLYSLNGH---REP-VYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTG-NGGIFEV  538 (563)
Q Consensus       471 g~i~iwd--~~~~-----~~~~~~~~h---~~~-i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~-~~~i~~l  538 (563)
                      -+|.-||  ..+|     +.++.++..   ..+ --.++..-+|.+.++.-..++|...|..+|+++.++.- ...|++.
T Consensus       180 ~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsc  259 (310)
T KOG4499|consen  180 YEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSC  259 (310)
T ss_pred             eEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEE
Confidence            8888888  3343     344554421   111 12344556777777777788999999999999988864 4468888


Q ss_pred             EEcCC
Q 008496          539 CWNKE  543 (563)
Q Consensus       539 ~w~~~  543 (563)
                      ||--.
T Consensus       260 cFgGk  264 (310)
T KOG4499|consen  260 CFGGK  264 (310)
T ss_pred             EecCC
Confidence            88644

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=92.77  E-value=8.9  Score=36.20  Aligned_cols=160  Identities=14%  Similarity=0.215  Sum_probs=99.5

Q ss_pred             ccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecc-cCeEEEecCCCceEEEEe-CCCeEEEEEcCCCc
Q 008496          312 SKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHS-GPTLDVDWRNNVSFATSS-TDNMIYVCKIGENR  389 (563)
Q Consensus       312 ~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~d~~i~~~~~~~~~  389 (563)
                      .+-+..|.++.|+|+.+.|++......-.||=-..|+++..+.... ...-.+.|..+..|+.+. .+..++++.+....
T Consensus        82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t  161 (316)
T COG3204          82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADT  161 (316)
T ss_pred             ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCc
Confidence            3445569999999999999998888888888767788887765432 122345676777776554 56677777665442


Q ss_pred             ce----------eeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCce---eeeecccC-------CCEEEEEEc
Q 008496          390 PI----------KTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKY---VHDLREHS-------KEIYTIRWS  449 (563)
Q Consensus       390 ~~----------~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~---~~~~~~~~-------~~i~~~~~~  449 (563)
                      .+          ......+...-.++|+|..+.|..+-+-.-++||.......   ++....+.       ..+.++.|.
T Consensus       162 ~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~  241 (316)
T COG3204         162 TVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFN  241 (316)
T ss_pred             cEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceec
Confidence            21          11112244577899999998888888877788776653321   11111111       123445554


Q ss_pred             cCCCCCCCCCCcEEEEEEeCCCeEEEEeCC
Q 008496          450 PTGSGTNNPNQQLILASASFDSTVKLWDVE  479 (563)
Q Consensus       450 p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~  479 (563)
                      +..        ..+|+-+..++.+.-.|..
T Consensus       242 ~~~--------~~LLVLS~ESr~l~Evd~~  263 (316)
T COG3204         242 AIT--------NSLLVLSDESRRLLEVDLS  263 (316)
T ss_pred             CCC--------CcEEEEecCCceEEEEecC
Confidence            432        2356666677777766654

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=92.54  E-value=7.4  Score=39.03  Aligned_cols=101  Identities=14%  Similarity=0.242  Sum_probs=53.4

Q ss_pred             ceeEEEECCCCCEEEEEeCCCcEEEEeCCCC-----c---eeeeecc----cCCCEEEEEEccCCCCCCCCCCcEEEEEE
Q 008496          400 EVNCVKWDPTGSLLASCSDDVTAKIWNMKQD-----K---YVHDLRE----HSKEIYTIRWSPTGSGTNNPNQQLILASA  467 (563)
Q Consensus       400 ~i~~~~~~~~~~~las~s~dg~i~iwd~~~~-----~---~~~~~~~----~~~~i~~~~~~p~~~~~~~~~~~~~l~s~  467 (563)
                      ..+.+++.+++ ++++ +.....++.|....     +   .+..+..    +......+.|.|+|.        +++..+
T Consensus        73 ~p~Gi~~~~~G-lyV~-~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~--------LYv~~G  142 (367)
T TIGR02604        73 MVTGLAVAVGG-VYVA-TPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGW--------LYFNHG  142 (367)
T ss_pred             CccceeEecCC-EEEe-CCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCC--------EEEecc
Confidence            34678888888 5554 33433334444321     1   1112221    123466788888764        344444


Q ss_pred             eC------------------CCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeC
Q 008496          468 SF------------------DSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSL  511 (563)
Q Consensus       468 s~------------------dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~  511 (563)
                      +.                  .|.|.-++...++......++.. ...++|+|+|.++++-..
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~rn-p~Gl~~d~~G~l~~tdn~  203 (367)
T TIGR02604       143 NTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGFQN-PYGHSVDSWGDVFFCDND  203 (367)
T ss_pred             cCCCceeccCCCccCcccccCceEEEEecCCCeEEEEecCcCC-CccceECCCCCEEEEccC
Confidence            21                  14455556655444333344433 478999999998876443

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=92.20  E-value=0.87  Score=41.77  Aligned_cols=64  Identities=20%  Similarity=0.310  Sum_probs=48.8

Q ss_pred             EcCCCCEEEEEeCCCcEEEEecCCCeeEEEE---------------ecCCCEEEEEEcCCCCEEEEEECCCeEEEEEeeC
Q 008496          499 FSPTGEYLASGSLDKSMHIWSLKEGKIVKTY---------------TGNGGIFEVCWNKEGDKIAACFANHTVCVLDFRM  563 (563)
Q Consensus       499 ~spdg~~lasgs~dg~v~iw~~~~~~~~~~~---------------~~~~~i~~l~w~~~g~~la~~~~~~~v~v~~~~~  563 (563)
                      +..++.+|.+-+.+|.+++||+.+++.+...               .....|..+..+.+|.-|++ .+||...+||..|
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~-lsng~~y~y~~~L   96 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVT-LSNGDSYSYSPDL   96 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEE-EeCCCEEEecccc
Confidence            4557889999999999999999998864332               13345788888988876655 5678889988654

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=91.56  E-value=11  Score=38.22  Aligned_cols=149  Identities=15%  Similarity=0.178  Sum_probs=83.6

Q ss_pred             CCCCEEE-EEeCCCcEEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC-CeEEE
Q 008496          408 PTGSLLA-SCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL-GKLLY  485 (563)
Q Consensus       408 ~~~~~la-s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~-~~~~~  485 (563)
                      .+..+|. .|..-..+.--|+..++.+.+...|...  -+.|.|..........+ .|+ |-.|..|.=-|.+. |..+.
T Consensus       477 ~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eq-tlv-GlS~~svFrIDPR~~gNKi~  552 (776)
T COG5167         477 NDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQ-TLV-GLSDYSVFRIDPRARGNKIK  552 (776)
T ss_pred             CCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccc-eEE-eecccceEEecccccCCcee
Confidence            3455544 4555556666677888888777777654  56677765432222222 233 43444454446542 32222


Q ss_pred             EecCCCCCEEEEEEcC----CCCEEEEEeCCCcEEEEecCCCeeEEEEec-CCCEEEEEEcCCCCEEEEEECCCeEEEEE
Q 008496          486 SLNGHREPVYSLAFSP----TGEYLASGSLDKSMHIWSLKEGKIVKTYTG-NGGIFEVCWNKEGDKIAACFANHTVCVLD  560 (563)
Q Consensus       486 ~~~~h~~~i~~l~~sp----dg~~lasgs~dg~v~iw~~~~~~~~~~~~~-~~~i~~l~w~~~g~~la~~~~~~~v~v~~  560 (563)
                      ... ...-++.-.||.    ...|+|.||..|-|++||.-.-.....+++ ...|-.+.-+.+|++|.+.+.+ .+-+.|
T Consensus       553 v~e-sKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~-yllL~d  630 (776)
T COG5167         553 VVE-SKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKN-YLLLTD  630 (776)
T ss_pred             eee-ehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecc-eEEEEe
Confidence            211 111122223332    346899999999999999643222222222 3457888899999977665554 666666


Q ss_pred             ee
Q 008496          561 FR  562 (563)
Q Consensus       561 ~~  562 (563)
                      ++
T Consensus       631 ~~  632 (776)
T COG5167         631 VP  632 (776)
T ss_pred             cc
Confidence            64

>PRK10115 protease 2; Provisional

Probab=91.53  E-value=25  Score=38.62  Aligned_cols=235  Identities=7%  Similarity=0.031  Sum_probs=111.8

Q ss_pred             CeEEEEECCCCCEEEEEeCC-----CeEEEEEcCCce--eEeeccCCCCEEEEEeCCCCCEEEEeeCC------CcEEEE
Q 008496          276 DVTTLDWNGEGTLLATGSYD-----GQARIWSTNGDL--KCTLSKHKGPIFSLKWNKKGDYLLTGSCD------KTAIVW  342 (563)
Q Consensus       276 ~V~~l~~s~~g~~l~sg~~d-----g~i~vw~~~~~~--~~~~~~h~~~V~~l~~~~~~~~l~s~s~D------~~v~iw  342 (563)
                      .+..+.|||||++|+.+...     -.+++-+..+..  ...+..   .-..+.|.++++.|+-...+      ..|..|
T Consensus       128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~---~~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h  204 (686)
T PRK10115        128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDN---VEPSFVWANDSWTFYYVRKHPVTLLPYQVWRH  204 (686)
T ss_pred             EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccC---cceEEEEeeCCCEEEEEEecCCCCCCCEEEEE
Confidence            46778999999988876443     257777775332  112221   11569999999877655432      357777


Q ss_pred             ECCCC--ceeEEeeecccCeEEEec-C-CCc-eEEEE--eCCCeEEEEEcC--CCcceeeecCCCcceeEEEECCCCCEE
Q 008496          343 DVKTE--EWKQQFEFHSGPTLDVDW-R-NNV-SFATS--STDNMIYVCKIG--ENRPIKTFAGHQGEVNCVKWDPTGSLL  413 (563)
Q Consensus       343 d~~~~--~~~~~~~~~~~~~~~~~~-~-~~~-~~~~~--~~d~~i~~~~~~--~~~~~~~~~~h~~~i~~~~~~~~~~~l  413 (563)
                      ++.++  +-...+........-..| . +.. .++.+  ..++.+++++..  ...+...+..-.+....+. +..+.++
T Consensus       205 ~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ly  283 (686)
T PRK10115        205 TIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HYQHRFY  283 (686)
T ss_pred             ECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eCCCEEE
Confidence            88777  333334322222221112 1 222 22222  234567777742  2222222211111111222 2223333


Q ss_pred             EEEeC-CCcEEEE--eCCCCceeeeeccc-C-CCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC-CeEEEEe
Q 008496          414 ASCSD-DVTAKIW--NMKQDKYVHDLREH-S-KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL-GKLLYSL  487 (563)
Q Consensus       414 as~s~-dg~i~iw--d~~~~~~~~~~~~~-~-~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~-~~~~~~~  487 (563)
                      +.... ....+|.  ++.....-..+..+ . ..+..+.+..+          .++++...+|.-+++-+.. +..+..+
T Consensus       284 ~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~----------~l~~~~~~~g~~~l~~~~~~~~~~~~l  353 (686)
T PRK10115        284 LRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLFTD----------WLVVEERQRGLTSLRQINRKTREVIGI  353 (686)
T ss_pred             EEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEECC----------EEEEEEEeCCEEEEEEEcCCCCceEEe
Confidence            32222 1233333  33311111233334 2 35666666522          3677777788766654432 2333443


Q ss_pred             c-CCCCCEEEEEEc--CCC-CEEEEEeC---CCcEEEEecCCCe
Q 008496          488 N-GHREPVYSLAFS--PTG-EYLASGSL---DKSMHIWSLKEGK  524 (563)
Q Consensus       488 ~-~h~~~i~~l~~s--pdg-~~lasgs~---dg~v~iw~~~~~~  524 (563)
                      . .....+..+.++  +++ .++++.+.   -+.+..+|+.+++
T Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~  397 (686)
T PRK10115        354 AFDDPAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE  397 (686)
T ss_pred             cCCCCceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence            3 222223334455  444 34444432   3678889988765

>PHA02790 Kelch-like protein; Provisional

Probab=91.50  E-value=12  Score=39.04  Aligned_cols=103  Identities=11%  Similarity=0.057  Sum_probs=49.5

Q ss_pred             CEEEEeeCC-----CcEEEEECCCCceeEEeeecccC-eEEEecCCCceEEEEeCC--CeEEEEEcCCCc--ceeeecCC
Q 008496          328 DYLLTGSCD-----KTAIVWDVKTEEWKQQFEFHSGP-TLDVDWRNNVSFATSSTD--NMIYVCKIGENR--PIKTFAGH  397 (563)
Q Consensus       328 ~~l~s~s~D-----~~v~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d--~~i~~~~~~~~~--~~~~~~~h  397 (563)
                      ..++.|+.+     .++..||+.+..|...-...... -......++..++.++.+  ..+..|+...+.  .+..+...
T Consensus       273 ~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~  352 (480)
T PHA02790        273 VVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKP  352 (480)
T ss_pred             EEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCCCCceEEEECCCCeEEECCCCCCC
Confidence            344555543     25677888887776533222111 112223355566666643  345566654331  11111111


Q ss_pred             CcceeEEEECCCCCEEEEEeCCC---cEEEEeCCCCce
Q 008496          398 QGEVNCVKWDPTGSLLASCSDDV---TAKIWNMKQDKY  432 (563)
Q Consensus       398 ~~~i~~~~~~~~~~~las~s~dg---~i~iwd~~~~~~  432 (563)
                      ......+..  +|++.+.|+.++   .+..||..+...
T Consensus       353 r~~~~~~~~--~g~IYviGG~~~~~~~ve~ydp~~~~W  388 (480)
T PHA02790        353 RCNPAVASI--NNVIYVIGGHSETDTTTEYLLPNHDQW  388 (480)
T ss_pred             CcccEEEEE--CCEEEEecCcCCCCccEEEEeCCCCEE
Confidence            111112222  577778877654   466788766554

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=91.49  E-value=0.033  Score=55.14  Aligned_cols=133  Identities=14%  Similarity=0.257  Sum_probs=91.4

Q ss_pred             EEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecCC--CceEEEEeCCCeEEEEEcCCCcceeeec
Q 008496          318 IFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN--NVSFATSSTDNMIYVCKIGENRPIKTFA  395 (563)
Q Consensus       318 V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~i~~~~~~~~~~~~~~~  395 (563)
                      .....|-|.+..++.++.+..+..||-.. +...... ..+..++++|.-  +...+.+...+.+++|++......+.-.
T Consensus        37 pi~~~w~~e~~nlavaca~tiv~~YD~ag-q~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~  114 (615)
T KOG2247|consen   37 PIIHRWRPEGHNLAVACANTIVIYYDKAG-QVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLES  114 (615)
T ss_pred             cceeeEecCCCceehhhhhhHHHhhhhhc-ceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhc
Confidence            34567889888899999999999998433 2221111 122345666643  3445667788899999997654322212


Q ss_pred             CCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEEEEEccCC
Q 008496          396 GHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTG  452 (563)
Q Consensus       396 ~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~  452 (563)
                      +-...-.-+.|++-++.++.+-..|.++|++..+.+.+..+-.|...+++++|.+.+
T Consensus       115 gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd  171 (615)
T KOG2247|consen  115 GGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLED  171 (615)
T ss_pred             cCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccc
Confidence            222222237899999999999999999999988877665555588999999998875

>PHA03098 kelch-like protein; Provisional

Probab=90.91  E-value=11  Score=39.96  Aligned_cols=144  Identities=9%  Similarity=0.070  Sum_probs=66.4

Q ss_pred             CCCEEEEEeCCC------eEEEEEcCCceeEeeccC---CCCEEEEEeCCCCCEEEEeeCC-----CcEEEEECCCCcee
Q 008496          285 EGTLLATGSYDG------QARIWSTNGDLKCTLSKH---KGPIFSLKWNKKGDYLLTGSCD-----KTAIVWDVKTEEWK  350 (563)
Q Consensus       285 ~g~~l~sg~~dg------~i~vw~~~~~~~~~~~~h---~~~V~~l~~~~~~~~l~s~s~D-----~~v~iwd~~~~~~~  350 (563)
                      ++.+++.||.++      .+..||........+...   ......+.  -++...+.|+.+     ..+..||+.+.+|.
T Consensus       294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~--~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~  371 (534)
T PHA03098        294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTV--FNNRIYVIGGIYNSISLNTVESWKPGESKWR  371 (534)
T ss_pred             CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEE--ECCEEEEEeCCCCCEecceEEEEcCCCCcee
Confidence            456667776543      456666554333222211   11111222  245566667655     35778999888776


Q ss_pred             EEeeeccc-CeEEEecCCCceEEEEeCC------CeEEEEEcCCCc--ceeeecCCCcceeEEEECCCCCEEEEEeCCC-
Q 008496          351 QQFEFHSG-PTLDVDWRNNVSFATSSTD------NMIYVCKIGENR--PIKTFAGHQGEVNCVKWDPTGSLLASCSDDV-  420 (563)
Q Consensus       351 ~~~~~~~~-~~~~~~~~~~~~~~~~~~d------~~i~~~~~~~~~--~~~~~~~h~~~i~~~~~~~~~~~las~s~dg-  420 (563)
                      ..-..... ....+...++..++.++.+      +.+..|+..+.+  .+..+........++.  .++++++.|+.++ 
T Consensus       372 ~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~  449 (534)
T PHA03098        372 EEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIY--HDGKIYVIGGISYI  449 (534)
T ss_pred             eCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEE--ECCEEEEECCccCC
Confidence            53221111 0111222344555555521      346677765432  1111111111111222  2566767776432 


Q ss_pred             -------cEEEEeCCCCce
Q 008496          421 -------TAKIWNMKQDKY  432 (563)
Q Consensus       421 -------~i~iwd~~~~~~  432 (563)
                             .+.+||..+.+.
T Consensus       450 ~~~~~~~~v~~yd~~~~~W  468 (534)
T PHA03098        450 DNIKVYNIVESYNPVTNKW  468 (534)
T ss_pred             CCCcccceEEEecCCCCce
Confidence                   267788766554

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=90.77  E-value=1.4  Score=27.85  Aligned_cols=40  Identities=20%  Similarity=0.238  Sum_probs=29.4

Q ss_pred             CCCCEEEEEe-CCCcEEEEecCCCeeEEEEecCCCEEEEEE
Q 008496          501 PTGEYLASGS-LDKSMHIWSLKEGKIVKTYTGNGGIFEVCW  540 (563)
Q Consensus       501 pdg~~lasgs-~dg~v~iw~~~~~~~~~~~~~~~~i~~l~w  540 (563)
                      |++++|.++. .+++|.++|..+++.+..+........+++
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~   41 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAV   41 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEe
Confidence            6777766554 578999999999998888766544555554

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=90.34  E-value=2.4  Score=37.35  Aligned_cols=36  Identities=28%  Similarity=0.577  Sum_probs=29.7

Q ss_pred             CEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC
Q 008496          442 EIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL  480 (563)
Q Consensus       442 ~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~  480 (563)
                      .+..++|||.|-+   ++..++||+...+|.|.||....
T Consensus        87 ~vv~~aWSP~Gl~---~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   87 QVVSAAWSPSGLG---PNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             cEEEEEECCCCCC---CCCceEEEEEcCCCeEEEEecCC
Confidence            6889999998863   34678999999999999997653

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=90.31  E-value=5.2  Score=40.59  Aligned_cols=94  Identities=12%  Similarity=0.109  Sum_probs=52.7

Q ss_pred             CEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecC
Q 008496          317 PIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAG  396 (563)
Q Consensus       317 ~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~  396 (563)
                      .|..+..++.|..++-.+.+|.+.++=.+....-..++.....+.+-.+.-+..|.+                     ..
T Consensus       105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ft---------------------ss  163 (741)
T KOG4460|consen  105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFT---------------------SS  163 (741)
T ss_pred             EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeec---------------------cC
Confidence            567788899999998888898877664332111111111111111111110111110                     01


Q ss_pred             CCcceeEEEECCCC---CEEEEEeCCCcEEEEeCCCCc
Q 008496          397 HQGEVNCVKWDPTG---SLLASCSDDVTAKIWNMKQDK  431 (563)
Q Consensus       397 h~~~i~~~~~~~~~---~~las~s~dg~i~iwd~~~~~  431 (563)
                      ..-.+..++|+|++   ..|..-+.|.+||+||+....
T Consensus       164 ~~ltl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~t  201 (741)
T KOG4460|consen  164 TSLTLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPT  201 (741)
T ss_pred             CceeeeeccccCCccCCceEEEEecCcEEEEEecCCcc
Confidence            11245678999976   567778889999999986544

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=90.11  E-value=11  Score=33.70  Aligned_cols=172  Identities=17%  Similarity=0.193  Sum_probs=80.2

Q ss_pred             CCCEEEEee--CCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEc
Q 008496          226 AGSLLASGS--GDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWST  303 (563)
Q Consensus       226 ~~~~latgs--~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~  303 (563)
                      +|.++.+.|  +.+.|++|++.+++........+...     +......-...+..+.|           .+|....+|.
T Consensus        55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~-----FgEGit~~gd~~y~LTw-----------~egvaf~~d~  118 (262)
T COG3823          55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTV-----FGEGITKLGDYFYQLTW-----------KEGVAFKYDA  118 (262)
T ss_pred             CCEEEEeccccccceeEEEeccCceEEEEeecCCccc-----cccceeeccceEEEEEe-----------ccceeEEECh
Confidence            456677666  46789999998775432111110000     00000001122333333           3566667765


Q ss_pred             CCce-eEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeee--cccC---eEEEecCCCceEEEEeCC
Q 008496          304 NGDL-KCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEF--HSGP---TLDVDWRNNVSFATSSTD  377 (563)
Q Consensus       304 ~~~~-~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~--~~~~---~~~~~~~~~~~~~~~~~d  377 (563)
                      +.-. ...+ .-.+.=++++  .++..|+.++...++..=|+.+.........  ...|   ...+.|.+...+|-.=..
T Consensus       119 ~t~~~lg~~-~y~GeGWgLt--~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~VdG~lyANVw~t  195 (262)
T COG3823         119 DTLEELGRF-SYEGEGWGLT--SDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWVDGELYANVWQT  195 (262)
T ss_pred             HHhhhhccc-ccCCcceeee--cCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeeeccEEEEeeeee
Confidence            4321 1111 1233445554  4555677666556677667766543333222  1112   233455555444433333


Q ss_pred             CeEEEEEcCCCcceeee------------cCCCcceeEEEECCCC-CEEEEE
Q 008496          378 NMIYVCKIGENRPIKTF------------AGHQGEVNCVKWDPTG-SLLASC  416 (563)
Q Consensus       378 ~~i~~~~~~~~~~~~~~------------~~h~~~i~~~~~~~~~-~~las~  416 (563)
                      ..|...+..+++.+..+            ..|.+-.+.+++.|++ ++++||
T Consensus       196 ~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG  247 (262)
T COG3823         196 TRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG  247 (262)
T ss_pred             cceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence            33333333333332221            1244567889998887 556665

>PRK10115 protease 2; Provisional

Probab=90.08  E-value=33  Score=37.65  Aligned_cols=193  Identities=9%  Similarity=0.075  Sum_probs=96.6

Q ss_pred             CceEEEEECCCCCEEEEeeCC-----CcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEE
Q 008496          216 SEVCACAWSPAGSLLASGSGD-----STARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLA  290 (563)
Q Consensus       216 ~~V~~~~~sp~~~~latgs~D-----~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~  290 (563)
                      -.+..+.|||++++||.+...     ..+++-++.++......         +          ...-..++|++|++.|+
T Consensus       127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~---------i----------~~~~~~~~w~~D~~~~~  187 (686)
T PRK10115        127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPEL---------L----------DNVEPSFVWANDSWTFY  187 (686)
T ss_pred             EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCcc---------c----------cCcceEEEEeeCCCEEE
Confidence            346678999999988875422     24667777554311000         0          00114589999998777


Q ss_pred             EEeCC------CeEEEEEcCCc---eeEeeccCCCCEE-EEEeCCCCCEEEEeeC---CCcEEEEECC--CCceeEEeee
Q 008496          291 TGSYD------GQARIWSTNGD---LKCTLSKHKGPIF-SLKWNKKGDYLLTGSC---DKTAIVWDVK--TEEWKQQFEF  355 (563)
Q Consensus       291 sg~~d------g~i~vw~~~~~---~~~~~~~h~~~V~-~l~~~~~~~~l~s~s~---D~~v~iwd~~--~~~~~~~~~~  355 (563)
                      ....+      ..|+.+++...   ....+........ .+..+.++.+++..+.   ++.+.+++..  .+.+...+..
T Consensus       188 y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~  267 (686)
T PRK10115        188 YVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPR  267 (686)
T ss_pred             EEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEEC
Confidence            66543      25666666533   2223333333333 3333447777664443   3568888842  3333222222


Q ss_pred             cccCeEEEecCCCceEEEEeC---CCeEEEEEcCCCcceeeecCC-C-cceeEEEECCCCCEEEEEeCCCcEEEEeCC
Q 008496          356 HSGPTLDVDWRNNVSFATSST---DNMIYVCKIGENRPIKTFAGH-Q-GEVNCVKWDPTGSLLASCSDDVTAKIWNMK  428 (563)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~---d~~i~~~~~~~~~~~~~~~~h-~-~~i~~~~~~~~~~~las~s~dg~i~iwd~~  428 (563)
                      .......+.-..+..++....   ...|...++........+..+ . ..|..+.+. .+.++++...+|.-+++-+.
T Consensus       268 ~~~~~~~~~~~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~  344 (686)
T PRK10115        268 RKDHEYSLDHYQHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQIN  344 (686)
T ss_pred             CCCCEEEEEeCCCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEc
Confidence            222222222112222222221   223444444421222333344 3 367778887 44566777778876666543

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=90.02  E-value=17  Score=38.91  Aligned_cols=187  Identities=11%  Similarity=0.190  Sum_probs=90.8

Q ss_pred             CcEEEEECCCCceeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCccee---eecCCCcceeEEEECCCCCEE
Q 008496          337 KTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIK---TFAGHQGEVNCVKWDPTGSLL  413 (563)
Q Consensus       337 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~---~~~~h~~~i~~~~~~~~~~~l  413 (563)
                      -.|+|++.. |..........+.++.+.|..+..+++...+|+++++++-....-.   -+......|..+.+..+|-.+
T Consensus        64 ~~I~If~~s-G~lL~~~~w~~~~lI~mgWs~~eeLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~GVav  142 (829)
T KOG2280|consen   64 PYIRIFNIS-GQLLGRILWKHGELIGMGWSDDEELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNGVAV  142 (829)
T ss_pred             eeEEEEecc-ccchHHHHhcCCCeeeecccCCceEEEEeccceEEEeecchhhhcccccccccccCceeEEEEecCceEE
Confidence            457777753 3333333333447888999999999999999999999874322111   011122234444444455333


Q ss_pred             EEEeCCCcEEEEeCCCCceeeeecc-cCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCe-EEEEecCCC
Q 008496          414 ASCSDDVTAKIWNMKQDKYVHDLRE-HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK-LLYSLNGHR  491 (563)
Q Consensus       414 as~s~dg~i~iwd~~~~~~~~~~~~-~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~-~~~~~~~h~  491 (563)
                      .  ..+|.+.+-.-........+.. ........+|.-.....   ....+|...-..+ ..+.-+..+. ....+....
T Consensus       143 l--t~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~---~~~~ll~v~~~v~-~~~~q~~~~~~q~~~~~~~~  216 (829)
T KOG2280|consen  143 L--TVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHR---QSTILLDVDVAVG-LHICQVEESRVQLHALSWPN  216 (829)
T ss_pred             E--ecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCC---cceeEEeechhhh-hcccceecccccccccCCCC
Confidence            3  3344444433222211222211 11111112332111000   0001111110000 0111111110 111121112


Q ss_pred             CCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEe
Q 008496          492 EPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYT  530 (563)
Q Consensus       492 ~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~  530 (563)
                      ..+..++.||++++||--..+|.|.+-++...+....+.
T Consensus       217 ~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~  255 (829)
T KOG2280|consen  217 SSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFN  255 (829)
T ss_pred             ceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccC
Confidence            457789999999999999999999998887666665554

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.98  E-value=12  Score=37.40  Aligned_cols=119  Identities=15%  Similarity=0.305  Sum_probs=74.5

Q ss_pred             cCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCce----eeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCC
Q 008496          395 AGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKY----VHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFD  470 (563)
Q Consensus       395 ~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~----~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~d  470 (563)
                      ....++|.++.|++|.+.||.--.|.+|.+++....+.    .++.+..+..|....|....          -+|--+..
T Consensus        63 m~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s~----------e~A~i~~~  132 (657)
T KOG2377|consen   63 MDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSST----------EIAFITDQ  132 (657)
T ss_pred             ecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecCe----------eEEEEecC
Confidence            34567899999999999999999999999998744332    22333445568889997652          23333333


Q ss_pred             CeEEEEeCCCC-eEEEEecCCCCCEEEEEEcCCCCEEEEEe--CCCcEEEEecCCCe
Q 008496          471 STVKLWDVELG-KLLYSLNGHREPVYSLAFSPTGEYLASGS--LDKSMHIWSLKEGK  524 (563)
Q Consensus       471 g~i~iwd~~~~-~~~~~~~~h~~~i~~l~~spdg~~lasgs--~dg~v~iw~~~~~~  524 (563)
                      | +-+|-+... +.+...+.|...|+--.|.|+-+.+..++  ..+++.=+.++++.
T Consensus       133 G-~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~~  188 (657)
T KOG2377|consen  133 G-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAGT  188 (657)
T ss_pred             C-eEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeece
Confidence            3 555554322 22344456777788888888877654333  23344444444443

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=89.56  E-value=1.6  Score=27.91  Aligned_cols=31  Identities=29%  Similarity=0.514  Sum_probs=26.0

Q ss_pred             cceeEEEECCCC---CEEEEEeCCCcEEEEeCCC
Q 008496          399 GEVNCVKWDPTG---SLLASCSDDVTAKIWNMKQ  429 (563)
Q Consensus       399 ~~i~~~~~~~~~---~~las~s~dg~i~iwd~~~  429 (563)
                      +.|.+++|+|..   .+|+..-.-|.+.|+|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            468899999854   4888888889999999985

It contains a characteristic DLL sequence motif.

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=89.00  E-value=26  Score=34.87  Aligned_cols=49  Identities=24%  Similarity=0.492  Sum_probs=25.8

Q ss_pred             eEEEEeCCCCeEEEE---------ecCCCC-CEEEEEEcCCCCEEE-EEeCCCcEEEEec
Q 008496          472 TVKLWDVELGKLLYS---------LNGHRE-PVYSLAFSPTGEYLA-SGSLDKSMHIWSL  520 (563)
Q Consensus       472 ~i~iwd~~~~~~~~~---------~~~h~~-~i~~l~~spdg~~la-sgs~dg~v~iw~~  520 (563)
                      -|+++++..++...-         +.++.. .=-...|||||++++ +....|...||-+
T Consensus       321 ~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v  380 (386)
T PF14583_consen  321 WIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLV  380 (386)
T ss_dssp             EEEEEETTTTEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEE
T ss_pred             EEEEeccccCceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEE
Confidence            577788887664311         121111 113579999999875 5566787777754

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=88.26  E-value=6.5  Score=39.82  Aligned_cols=142  Identities=12%  Similarity=0.160  Sum_probs=83.3

Q ss_pred             eEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCC--------CEEEEEeCCCcEEEEeCCCCc-eeeeecccC
Q 008496          370 SFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTG--------SLLASCSDDVTAKIWNMKQDK-YVHDLREHS  440 (563)
Q Consensus       370 ~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~--------~~las~s~dg~i~iwd~~~~~-~~~~~~~~~  440 (563)
                      .|..++....++-.|+.-++.+..+.-|..-  -+.|.|+.        +.|+--|+.+..| .|.+-.. .+.. ....
T Consensus       482 i~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFr-IDPR~~gNKi~v-~esK  557 (776)
T COG5167         482 IYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFR-IDPRARGNKIKV-VESK  557 (776)
T ss_pred             EEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEE-ecccccCCceee-eeeh
Confidence            3445566667888888888888888776654  47777754        3344444444434 3543221 1110 0111


Q ss_pred             CCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEec
Q 008496          441 KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSL  520 (563)
Q Consensus       441 ~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~  520 (563)
                      .-.+.-.|+..+.     ...-++|.||.-|-||+||--.-+....+.+....|..|..+.+|++|.+.+. ..+.+-|+
T Consensus       558 dY~tKn~Fss~~t-----TesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk-~yllL~d~  631 (776)
T COG5167         558 DYKTKNKFSSGMT-----TESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCK-NYLLLTDV  631 (776)
T ss_pred             hcccccccccccc-----ccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeec-ceEEEEec
Confidence            1122223332221     11237999999999999995433333445666778999999999998875553 35666665


Q ss_pred             C
Q 008496          521 K  521 (563)
Q Consensus       521 ~  521 (563)
                      +
T Consensus       632 ~  632 (776)
T COG5167         632 P  632 (776)
T ss_pred             c
Confidence            3

>PHA02790 Kelch-like protein; Provisional

Probab=87.97  E-value=37  Score=35.47  Aligned_cols=142  Identities=9%  Similarity=0.016  Sum_probs=63.3

Q ss_pred             CCCEEEEEeCCC-----eEEEEEcCCceeEeeccCCCC--EEEEEeCCCCCEEEEeeCC--CcEEEEECCCCceeEEeee
Q 008496          285 EGTLLATGSYDG-----QARIWSTNGDLKCTLSKHKGP--IFSLKWNKKGDYLLTGSCD--KTAIVWDVKTEEWKQQFEF  355 (563)
Q Consensus       285 ~g~~l~sg~~dg-----~i~vw~~~~~~~~~~~~h~~~--V~~l~~~~~~~~l~s~s~D--~~v~iwd~~~~~~~~~~~~  355 (563)
                      ++.+++.||.++     .+..||........+.....+  -.++. .-++...+.|+.+  .++..||..+.+|...-..
T Consensus       271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v-~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l  349 (480)
T PHA02790        271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGV-PANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSL  349 (480)
T ss_pred             CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEE-EECCEEEEECCcCCCCceEEEECCCCeEEECCCC
Confidence            345667777543     455666554322222211111  01121 1245555666653  4688899887777553222


Q ss_pred             cccC-eEEEecCCCceEEEEeCCC---eEEEEEcCCCcc--eeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCC
Q 008496          356 HSGP-TLDVDWRNNVSFATSSTDN---MIYVCKIGENRP--IKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQ  429 (563)
Q Consensus       356 ~~~~-~~~~~~~~~~~~~~~~~d~---~i~~~~~~~~~~--~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~  429 (563)
                      .... -..+.-.++..++.++.++   .+..|+..++.=  +..+.-.......+.  -++++.+.|+   .+.+||..+
T Consensus       350 ~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~--~~~~IYv~GG---~~e~ydp~~  424 (480)
T PHA02790        350 LKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALV--FGRRLFLVGR---NAEFYCESS  424 (480)
T ss_pred             CCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEE--ECCEEEEECC---ceEEecCCC
Confidence            2111 1122223455556655432   344555443210  000100011111222  2566666664   466788766


Q ss_pred             Cce
Q 008496          430 DKY  432 (563)
Q Consensus       430 ~~~  432 (563)
                      ++.
T Consensus       425 ~~W  427 (480)
T PHA02790        425 NTW  427 (480)
T ss_pred             CcE
Confidence            554

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=87.83  E-value=43  Score=36.01  Aligned_cols=51  Identities=20%  Similarity=0.328  Sum_probs=40.0

Q ss_pred             CCeEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCC
Q 008496          295 DGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKT  346 (563)
Q Consensus       295 dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~  346 (563)
                      --.|+|++..|.+...+.-..+++..+.|+.+. .|+....||++.+|++..
T Consensus        63 ~~~I~If~~sG~lL~~~~w~~~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~g  113 (829)
T KOG2280|consen   63 RPYIRIFNISGQLLGRILWKHGELIGMGWSDDE-ELICVQKDGTVHVYGLLG  113 (829)
T ss_pred             ceeEEEEeccccchHHHHhcCCCeeeecccCCc-eEEEEeccceEEEeecch
Confidence            356999999998776655444588899999765 567778999999999754

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=87.70  E-value=2.8  Score=26.03  Aligned_cols=31  Identities=29%  Similarity=0.354  Sum_probs=20.0

Q ss_pred             cCCCCCEEEEEEcCCCCEEEEEe-CC--CcEEEE
Q 008496          488 NGHREPVYSLAFSPTGEYLASGS-LD--KSMHIW  518 (563)
Q Consensus       488 ~~h~~~i~~l~~spdg~~lasgs-~d--g~v~iw  518 (563)
                      ..........+|||||++|+-.+ .+  |.-.||
T Consensus         5 t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    5 TNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             S-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             ccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            33445678899999999887544 44  666555

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=87.27  E-value=36  Score=34.56  Aligned_cols=142  Identities=15%  Similarity=0.162  Sum_probs=82.0

Q ss_pred             CCCEEEEEeCCCeEEEEEcCCcee-----EeeccCCCCEEEEEeCC----CCCEEEEeeCCCcEEEEECCC--Cc-----
Q 008496          285 EGTLLATGSYDGQARIWSTNGDLK-----CTLSKHKGPIFSLKWNK----KGDYLLTGSCDKTAIVWDVKT--EE-----  348 (563)
Q Consensus       285 ~g~~l~sg~~dg~i~vw~~~~~~~-----~~~~~h~~~V~~l~~~~----~~~~l~s~s~D~~v~iwd~~~--~~-----  348 (563)
                      +...|++|+..|.+|||++.+...     ..-..-+.||..+..-+    .....++.=.-+.+.+|.+..  +.     
T Consensus        36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~  115 (418)
T PF14727_consen   36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGN  115 (418)
T ss_pred             CccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCc
Confidence            346899999999999999754221     11123457888876532    222334445567788887621  11     


Q ss_pred             ---eeEEeeeccc-CeEEE---ecC---CCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeC
Q 008496          349 ---WKQQFEFHSG-PTLDV---DWR---NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD  418 (563)
Q Consensus       349 ---~~~~~~~~~~-~~~~~---~~~---~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~  418 (563)
                         +...++.+-. ....+   .+.   ....+..-+.||.+.+++-+...-...+.+ ---.-.+.|.+....|++++.
T Consensus       116 ~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsfvt~ss  194 (418)
T PF14727_consen  116 QYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSFVTASS  194 (418)
T ss_pred             EEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEEEEecC
Confidence               1111111111 11111   221   134567789999999998765432222322 112235778888888999999


Q ss_pred             CCcEEEEeC
Q 008496          419 DVTAKIWNM  427 (563)
Q Consensus       419 dg~i~iwd~  427 (563)
                      +..+..|..
T Consensus       195 s~~l~~Yky  203 (418)
T PF14727_consen  195 SWTLECYKY  203 (418)
T ss_pred             ceeEEEecH
Confidence            999998875

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=87.16  E-value=54  Score=36.45  Aligned_cols=274  Identities=13%  Similarity=0.180  Sum_probs=142.5

Q ss_pred             eEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEEeCCCe
Q 008496          218 VCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQ  297 (563)
Q Consensus       218 V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~dg~  297 (563)
                      |-.+.|--|..+|..+.+||.+.-+-+...+....         ..+.    ..-...+++--.|+..++.-+-+..|.-
T Consensus       586 Il~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~ls---------d~Kk----~~lGt~P~~Lr~f~sk~~t~vfa~sdrP  652 (1096)
T KOG1897|consen  586 ILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLS---------DRKK----VTLGTQPISLRTFSSKSRTAVFALSDRP  652 (1096)
T ss_pred             eeeEEeeccceEEEEEcCCceEEEEEEEcccceEc---------cccc----cccCCCCcEEEEEeeCCceEEEEeCCCC
Confidence            44455655678899999999988776543221000         0000    0111345566667766665566667777


Q ss_pred             EEEEEcCCceeEeeccCCCCEEEEEeCCC--CCEEEEeeCCCcEEEEECCCCc--eeEEeeecccCeEEEecCC-CceEE
Q 008496          298 ARIWSTNGDLKCTLSKHKGPIFSLKWNKK--GDYLLTGSCDKTAIVWDVKTEE--WKQQFEFHSGPTLDVDWRN-NVSFA  372 (563)
Q Consensus       298 i~vw~~~~~~~~~~~~h~~~V~~l~~~~~--~~~l~s~s~D~~v~iwd~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~  372 (563)
                      ..+|..++++..+--.-+..-....|+.+  ...|+++. .+.+++--+..-.  ..++...+. +...+++.+ ...|.
T Consensus       653 ~viY~~n~kLv~spls~kev~~~c~f~s~a~~d~l~~~~-~~~l~i~tid~iqkl~irtvpl~~-~prrI~~q~~sl~~~  730 (1096)
T KOG1897|consen  653 TVIYSSNGKLVYSPLSLKEVNHMCPFNSDAYPDSLASAN-GGALTIGTIDEIQKLHIRTVPLGE-SPRRICYQESSLTFG  730 (1096)
T ss_pred             EEEEecCCcEEEeccchHHhhhhcccccccCCceEEEec-CCceEEEEecchhhcceeeecCCC-ChhheEecccceEEE
Confidence            78888777765432211111111223322  23455544 3455555433211  122222211 222333333 22222


Q ss_pred             EEeC-----------CCe---EEEEEcCCCcceeeecCCCc-------ceeEEEECCC-CCEEEEEe----------CCC
Q 008496          373 TSST-----------DNM---IYVCKIGENRPIKTFAGHQG-------EVNCVKWDPT-GSLLASCS----------DDV  420 (563)
Q Consensus       373 ~~~~-----------d~~---i~~~~~~~~~~~~~~~~h~~-------~i~~~~~~~~-~~~las~s----------~dg  420 (563)
                      +.+.           ...   ++++|-.+   ...+..|.-       .|.++.|..| +.+++.|.          ..|
T Consensus       731 v~s~r~e~~~~~~~ee~~~s~l~vlD~nT---f~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~G  807 (1096)
T KOG1897|consen  731 VLSNRIESSAEYYGEEYEVSFLRVLDQNT---FEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNG  807 (1096)
T ss_pred             EEecccccchhhcCCcceEEEEEEecCCc---eeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccc
Confidence            2221           111   22333222   223333321       3556668776 67777764          235


Q ss_pred             cEEEEeCCCCceeeeecc--cCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEE
Q 008496          421 TAKIWNMKQDKYVHDLRE--HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLA  498 (563)
Q Consensus       421 ~i~iwd~~~~~~~~~~~~--~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~  498 (563)
                      .|.|+.+...+.+.....  -.+.++++.-- +|         .+|  ++....|++|++.+.+.++.-..|..++..+.
T Consensus       808 RIivfe~~e~~~L~~v~e~~v~Gav~aL~~f-ng---------kll--A~In~~vrLye~t~~~eLr~e~~~~~~~~aL~  875 (1096)
T KOG1897|consen  808 RIIVFEFEELNSLELVAETVVKGAVYALVEF-NG---------KLL--AGINQSVRLYEWTTERELRIECNISNPIIALD  875 (1096)
T ss_pred             eEEEEEEecCCceeeeeeeeeccceeehhhh-CC---------eEE--EecCcEEEEEEccccceehhhhcccCCeEEEE
Confidence            566665544222221111  12334444321 11         133  45678999999998877777777889999999


Q ss_pred             EcCCCCEEEEEeCCCcEEEEecC
Q 008496          499 FSPTGEYLASGSLDKSMHIWSLK  521 (563)
Q Consensus       499 ~spdg~~lasgs~dg~v~iw~~~  521 (563)
                      ..-.|..++.|..-+++.+-..+
T Consensus       876 l~v~gdeI~VgDlm~Sitll~y~  898 (1096)
T KOG1897|consen  876 LQVKGDEIAVGDLMRSITLLQYK  898 (1096)
T ss_pred             EEecCcEEEEeeccceEEEEEEe
Confidence            99999999999988877665543

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=87.01  E-value=7.7  Score=34.08  Aligned_cols=31  Identities=26%  Similarity=0.558  Sum_probs=25.0

Q ss_pred             CCeEEEEECCCC------CEEEEEeCCCeEEEEEcCC
Q 008496          275 KDVTTLDWNGEG------TLLATGSYDGQARIWSTNG  305 (563)
Q Consensus       275 ~~V~~l~~s~~g------~~l~sg~~dg~i~vw~~~~  305 (563)
                      ..|..++|||.|      .+|++-+.+|.+.||...+
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            378999999965      5788888999999997543

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=86.87  E-value=9.9  Score=38.72  Aligned_cols=70  Identities=17%  Similarity=0.305  Sum_probs=49.2

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCcEEEEec---------CCCeeEEEE----------ecCCC--EEEEEEcCCC---CEEE
Q 008496          493 PVYSLAFSPTGEYLASGSLDKSMHIWSL---------KEGKIVKTY----------TGNGG--IFEVCWNKEG---DKIA  548 (563)
Q Consensus       493 ~i~~l~~spdg~~lasgs~dg~v~iw~~---------~~~~~~~~~----------~~~~~--i~~l~w~~~g---~~la  548 (563)
                      .|..+..||.|..+|..|.+|.+.++=.         ++|+.+-+.          .....  +.-.+|+|++   .+|.
T Consensus       105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~  184 (741)
T KOG4460|consen  105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV  184 (741)
T ss_pred             EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence            3678889999999999999997666542         334322211          11111  3357899987   5888


Q ss_pred             EEECCCeEEEEEee
Q 008496          549 ACFANHTVCVLDFR  562 (563)
Q Consensus       549 ~~~~~~~v~v~~~~  562 (563)
                      .-.+|..++|||+.
T Consensus       185 iL~sdnviRiy~lS  198 (741)
T KOG4460|consen  185 LLTSDNVIRIYSLS  198 (741)
T ss_pred             EEecCcEEEEEecC
Confidence            88899999999864

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=86.71  E-value=41  Score=34.59  Aligned_cols=55  Identities=13%  Similarity=0.143  Sum_probs=37.8

Q ss_pred             CcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCc--eeeeec-----ccCCCEEEEEEccCC
Q 008496          398 QGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDK--YVHDLR-----EHSKEIYTIRWSPTG  452 (563)
Q Consensus       398 ~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~--~~~~~~-----~~~~~i~~~~~~p~~  452 (563)
                      -...+.|+|.|||++|++--..|.|++++..+..  .+..+.     ........|+++|+-
T Consensus        29 L~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF   90 (454)
T TIGR03606        29 LNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF   90 (454)
T ss_pred             CCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence            3456789999999988877667999999765432  221111     124567889999874

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=85.08  E-value=20  Score=29.60  Aligned_cols=120  Identities=16%  Similarity=0.096  Sum_probs=71.0

Q ss_pred             EEEECCCCCEEEEEeCCCcEEEEeCCCCc--------eeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEE
Q 008496          403 CVKWDPTGSLLASCSDDVTAKIWNMKQDK--------YVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVK  474 (563)
Q Consensus       403 ~~~~~~~~~~las~s~dg~i~iwd~~~~~--------~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~  474 (563)
                      .-+|......|+.++.-|.|.|.+.....        .+..+ .-...|++++-.+-..    ....-.|+.|+ ..+|.
T Consensus         3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~L-Nin~~italaaG~l~~----~~~~D~LliGt-~t~ll   76 (136)
T PF14781_consen    3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFL-NINQEITALAAGRLKP----DDGRDCLLIGT-QTSLL   76 (136)
T ss_pred             EEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEE-ECCCceEEEEEEecCC----CCCcCEEEEec-cceEE
Confidence            34566666778888888899998865332        22222 2345677776544321    01122455555 46799


Q ss_pred             EEeCCCCeEEEEecCCCCCEEEEEEcC---CCCEEEEEeCCCcEEEEecCCCeeEEEE
Q 008496          475 LWDVELGKLLYSLNGHREPVYSLAFSP---TGEYLASGSLDKSMHIWSLKEGKIVKTY  529 (563)
Q Consensus       475 iwd~~~~~~~~~~~~h~~~i~~l~~sp---dg~~lasgs~dg~v~iw~~~~~~~~~~~  529 (563)
                      .||+.....++.-.- ...|+++.+-.   ...-|+..+.+..|.-||....++..+.
T Consensus        77 aYDV~~N~d~Fyke~-~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWtV  133 (136)
T PF14781_consen   77 AYDVENNSDLFYKEV-PDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWTV  133 (136)
T ss_pred             EEEcccCchhhhhhC-ccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEEe
Confidence            999987776654332 35677777632   2233444555777888887665555543

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=84.91  E-value=66  Score=35.37  Aligned_cols=73  Identities=23%  Similarity=0.374  Sum_probs=53.5

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCeEEEE-----EcCC-----c--eeEe-e--------ccCCCCEEEEEeCCC---CCEE
Q 008496          275 KDVTTLDWNGEGTLLATGSYDGQARIW-----STNG-----D--LKCT-L--------SKHKGPIFSLKWNKK---GDYL  330 (563)
Q Consensus       275 ~~V~~l~~s~~g~~l~sg~~dg~i~vw-----~~~~-----~--~~~~-~--------~~h~~~V~~l~~~~~---~~~l  330 (563)
                      -.|..+..|++|++++..|..|.+.+.     ..++     +  ..+. +        ..+...|..+.|+|.   +.+|
T Consensus        85 f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l  164 (717)
T PF10168_consen   85 FEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL  164 (717)
T ss_pred             eeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence            468999999999999999988765543     2222     1  1121 1        234567899999997   4789


Q ss_pred             EEeeCCCcEEEEECCCC
Q 008496          331 LTGSCDKTAIVWDVKTE  347 (563)
Q Consensus       331 ~s~s~D~~v~iwd~~~~  347 (563)
                      +.-..|+++|+||+...
T Consensus       165 ~vLtsdn~lR~y~~~~~  181 (717)
T PF10168_consen  165 VVLTSDNTLRLYDISDP  181 (717)
T ss_pred             EEEecCCEEEEEecCCC
Confidence            99999999999999643

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=84.20  E-value=61  Score=34.82  Aligned_cols=72  Identities=19%  Similarity=0.332  Sum_probs=44.4

Q ss_pred             eEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEEeCCCe
Q 008496          218 VCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQ  297 (563)
Q Consensus       218 V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~dg~  297 (563)
                      ++++.-+|.+..++.|..||.+++|++.......        ..          ....+-..+.|...|  |+++..|..
T Consensus        17 ~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qsk--------i~----------~~~~p~~nlv~tnhg--l~~~tsdrr   76 (1636)
T KOG3616|consen   17 TTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSK--------IC----------EEAKPKENLVFTNHG--LVTATSDRR   76 (1636)
T ss_pred             eeeeeecCCCceEEEEecCCcEEEEeecccchhh--------hh----------hhcCCccceeeeccc--eEEEeccch
Confidence            5677778999999999999999999975432100        00          001112223333333  566677777


Q ss_pred             EEEEEcCCceeE
Q 008496          298 ARIWSTNGDLKC  309 (563)
Q Consensus       298 i~vw~~~~~~~~  309 (563)
                      +.-|..+|-...
T Consensus        77 ~la~~~dgvvqq   88 (1636)
T KOG3616|consen   77 ALAWKEDGVVQQ   88 (1636)
T ss_pred             hheeeccCcchh
Confidence            888877764433

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=83.87  E-value=11  Score=40.51  Aligned_cols=100  Identities=15%  Similarity=0.202  Sum_probs=67.3

Q ss_pred             EEEEEEeCCCeEEEEeCCC-------C-------------eEEEEecCCCCCEEEEEEc--CCCCEEEEEeCCCcEEEEe
Q 008496          462 LILASASFDSTVKLWDVEL-------G-------------KLLYSLNGHREPVYSLAFS--PTGEYLASGSLDKSMHIWS  519 (563)
Q Consensus       462 ~~l~s~s~dg~i~iwd~~~-------~-------------~~~~~~~~h~~~i~~l~~s--pdg~~lasgs~dg~v~iw~  519 (563)
                      -+|+.|..||.|.+|.++.       .             ++.+.+. ....+++++++  ...++||+++-...|.||-
T Consensus       115 EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFa  193 (717)
T PF08728_consen  115 EVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEVTVFA  193 (717)
T ss_pred             eEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCceEEEEE
Confidence            3788899999999996521       0             0112222 23468999998  7788899888888888876


Q ss_pred             cCC--Cee--EEEEecCCCEEEEEEcCCC---C---EEEEEECCCeEEEEEee
Q 008496          520 LKE--GKI--VKTYTGNGGIFEVCWNKEG---D---KIAACFANHTVCVLDFR  562 (563)
Q Consensus       520 ~~~--~~~--~~~~~~~~~i~~l~w~~~g---~---~la~~~~~~~v~v~~~~  562 (563)
                      ...  .+.  .........|.+++|-++.   .   +|++++-.|.+.+|+|+
T Consensus       194 f~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I~  246 (717)
T PF08728_consen  194 FALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKIK  246 (717)
T ss_pred             EeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEEE
Confidence            543  121  1122233457788886643   2   88889999999999883

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PRK13613 lipoprotein LpqB; Provisional

Probab=83.65  E-value=68  Score=34.47  Aligned_cols=151  Identities=13%  Similarity=0.097  Sum_probs=77.1

Q ss_pred             ceeeecCCCc-ceeEEEECCCCCEEEEEeCCC-cEEEEeCCCCce----e-eeecccCCCEEEEEEccCCCCCCCCCCcE
Q 008496          390 PIKTFAGHQG-EVNCVKWDPTGSLLASCSDDV-TAKIWNMKQDKY----V-HDLREHSKEIYTIRWSPTGSGTNNPNQQL  462 (563)
Q Consensus       390 ~~~~~~~h~~-~i~~~~~~~~~~~las~s~dg-~i~iwd~~~~~~----~-~~~~~~~~~i~~~~~~p~~~~~~~~~~~~  462 (563)
                      ++.-..++.. .+.+++.++++..+|..+.++ .+.+..+..+..    . ..+.  ...++.-.|.+.+.        .
T Consensus       353 pv~g~~g~~~~~~~s~avS~~g~~~A~v~~~~~~l~vg~~~~~~~~~~~~~~~~~--~~~Lt~PS~d~~g~--------v  422 (599)
T PRK13613        353 PVPGALGSGRVPLRRVAVSRDESRAAGISADGDSVYVGSLTPGASIGVHSWGVTA--DGRLTSPSWDGRGD--------L  422 (599)
T ss_pred             cCCCccCCCCCCccceEEcCCCceEEEEcCCCcEEEEeccCCCCccccccceeec--cCcccCCcCcCCCC--------E
Confidence            3333334444 678899999999988777665 445544322221    0 1111  12244445554442        2


Q ss_pred             EEEEEeCCC--eEEEEeCCCCeEEE-EecCCCC-CEEEEEEcCCCCEEEEEeC---CCcEEEEecC---CCe-eEEE---
Q 008496          463 ILASASFDS--TVKLWDVELGKLLY-SLNGHRE-PVYSLAFSPTGEYLASGSL---DKSMHIWSLK---EGK-IVKT---  528 (563)
Q Consensus       463 ~l~s~s~dg--~i~iwd~~~~~~~~-~~~~h~~-~i~~l~~spdg~~lasgs~---dg~v~iw~~~---~~~-~~~~---  528 (563)
                      +.+-++.++  .+++..- .|+... ......+ .|..+..|+||..+|.-..   .++|.|=-+.   .|. .+..   
T Consensus       423 Wtvd~~~~~~~vl~v~~~-~G~~~~V~~~~l~g~~I~~lrvSrDG~RvAvv~~~~g~~~v~va~V~R~~~G~~~l~~~~~  501 (599)
T PRK13613        423 WVVDRDPADPRLLWLLQG-DGEPVEVRTPELDGHRVVAVRVARDGVRVALIVEKDGRRSLQIGRIVRDAKAVVSVEEFRS  501 (599)
T ss_pred             EEecCCCCCceEEEEEcC-CCcEEEeeccccCCCEeEEEEECCCccEEEEEEecCCCcEEEEEEEEeCCCCcEEeeccEE
Confidence            222111122  2444432 233211 1112223 7999999999987765332   3556555442   232 1111   


Q ss_pred             E-ecCCCEEEEEEcCCCCEEEEEE
Q 008496          529 Y-TGNGGIFEVCWNKEGDKIAACF  551 (563)
Q Consensus       529 ~-~~~~~i~~l~w~~~g~~la~~~  551 (563)
                      . .....+.+++|..++..++.+.
T Consensus       502 l~~~l~~v~~~~W~~~~sL~Vlg~  525 (599)
T PRK13613        502 LAPELEDVTDMSWAGDSQLVVLGR  525 (599)
T ss_pred             eccCCCccceeEEcCCCEEEEEec
Confidence            1 1234578999999998777663

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=83.63  E-value=18  Score=39.01  Aligned_cols=110  Identities=11%  Similarity=0.203  Sum_probs=72.5

Q ss_pred             cCCCceEEEEeCCCeEEEEEcCC-------C-------------cceeeecCCCcceeEEEEC--CCCCEEEEEeCCCcE
Q 008496          365 WRNNVSFATSSTDNMIYVCKIGE-------N-------------RPIKTFAGHQGEVNCVKWD--PTGSLLASCSDDVTA  422 (563)
Q Consensus       365 ~~~~~~~~~~~~d~~i~~~~~~~-------~-------------~~~~~~~~h~~~i~~~~~~--~~~~~las~s~dg~i  422 (563)
                      |.+...++.|..||.|.+|.+..       .             +|...+. -...+++++++  ...++||.+++...|
T Consensus       111 lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~V  189 (717)
T PF08728_consen  111 LGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEV  189 (717)
T ss_pred             cCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCceE
Confidence            34455677888999999986521       0             1222222 23368899998  888999999999999


Q ss_pred             EEEeCCC--Cceee-eecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeC
Q 008496          423 KIWNMKQ--DKYVH-DLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDV  478 (563)
Q Consensus       423 ~iwd~~~--~~~~~-~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~  478 (563)
                      .||-+..  .+..+ .-..|...|.+|.|-++...   +++...|++++-.|.+-+|++
T Consensus       190 TVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d---~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  190 TVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLD---PNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             EEEEEeccccccccccccccccCCCeeEeecCCCC---CccceEEEEEeccCcEEEEEE
Confidence            8886543  11111 11135567888999876532   222247888999999999887

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=83.45  E-value=17  Score=33.84  Aligned_cols=145  Identities=19%  Similarity=0.276  Sum_probs=73.8

Q ss_pred             EEEEcCCCcceeeec-CCCcceeEEEECCCCCEEEEEeC-C--CcEEEEeCCCCceeeeecccCCCEEEEEEccCCCCCC
Q 008496          381 YVCKIGENRPIKTFA-GHQGEVNCVKWDPTGSLLASCSD-D--VTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTN  456 (563)
Q Consensus       381 ~~~~~~~~~~~~~~~-~h~~~i~~~~~~~~~~~las~s~-d--g~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~  456 (563)
                      .+||+.+++. +.+. ...-.+.+-.+-+||++|.+|+. +  ..+|+++...................-+|-|..  ..
T Consensus        49 ~~yD~~tn~~-rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~--~~  125 (243)
T PF07250_consen   49 VEYDPNTNTF-RPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTA--TT  125 (243)
T ss_pred             EEEecCCCcE-EeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccc--eE
Confidence            3566655432 1111 11222334456789999999887 3  347777754311011111111112233454432  12


Q ss_pred             CCCCcEEEEEEeCCCeEEEEeCCC-CeEEEE---ecC----CCCC-EEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEE
Q 008496          457 NPNQQLILASASFDSTVKLWDVEL-GKLLYS---LNG----HREP-VYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVK  527 (563)
Q Consensus       457 ~~~~~~~l~s~s~dg~i~iwd~~~-~~~~~~---~~~----h~~~-i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~  527 (563)
                      -++++.+++.|+...+..+|.-.. ......   +..    .... ---+...|||++++.+..+.  .|||..+.++++
T Consensus       126 L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s--~i~d~~~n~v~~  203 (243)
T PF07250_consen  126 LPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGS--IIYDYKTNTVVR  203 (243)
T ss_pred             CCCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCc--EEEeCCCCeEEe
Confidence            344556666666666677776532 111111   110    0011 11355689999998888654  467888887776


Q ss_pred             EEe
Q 008496          528 TYT  530 (563)
Q Consensus       528 ~~~  530 (563)
                      .+.
T Consensus       204 ~lP  206 (243)
T PF07250_consen  204 TLP  206 (243)
T ss_pred             eCC
Confidence            664

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=83.18  E-value=55  Score=33.11  Aligned_cols=143  Identities=13%  Similarity=0.146  Sum_probs=79.2

Q ss_pred             eeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC
Q 008496          401 VNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL  480 (563)
Q Consensus       401 i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~  480 (563)
                      ...+..++++.+++.+..-..++-||-........-......++.+.|.+++.         ++ ..+.+|.+. |....
T Consensus       241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~---------l~-l~g~~G~l~-~S~d~  309 (398)
T PLN00033        241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGG---------LW-LLTRGGGLY-VSKGT  309 (398)
T ss_pred             eeeEEEcCCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCC---------EE-EEeCCceEE-EecCC
Confidence            44556678888777665544444455322111111122345678888887764         33 334566653 34444


Q ss_pred             Ce-----EEEEecC--CCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEe----cCCCEEEEEEcCCCCEEEE
Q 008496          481 GK-----LLYSLNG--HREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYT----GNGGIFEVCWNKEGDKIAA  549 (563)
Q Consensus       481 ~~-----~~~~~~~--h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~----~~~~i~~l~w~~~g~~la~  549 (563)
                      ++     ....+..  -...++++.|.+++..+++| ..|.+.... ..|+--....    ....++.+.|.++++-.++
T Consensus       310 G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~  387 (398)
T PLN00033        310 GLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVL  387 (398)
T ss_pred             CCcccccceeecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEE
Confidence            43     2222221  12358999999988876655 567665543 3443211111    1245789999888877777


Q ss_pred             EECCCeEE
Q 008496          550 CFANHTVC  557 (563)
Q Consensus       550 ~~~~~~v~  557 (563)
                      | .+|.|.
T Consensus       388 G-~~G~il  394 (398)
T PLN00033        388 G-NDGVLL  394 (398)
T ss_pred             e-CCcEEE
Confidence            7 666654

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=83.14  E-value=12  Score=34.27  Aligned_cols=70  Identities=16%  Similarity=0.207  Sum_probs=51.2

Q ss_pred             ECCCCCEEEEEeCCCeEEEEEcCCceeE--------eec-------cCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCC
Q 008496          282 WNGEGTLLATGSYDGQARIWSTNGDLKC--------TLS-------KHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKT  346 (563)
Q Consensus       282 ~s~~g~~l~sg~~dg~i~vw~~~~~~~~--------~~~-------~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~  346 (563)
                      +...+.+|++-+.+|.+++||+......        .+.       .....|..+..+.+|.-+++-+ +|....|+..-
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L   96 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL   96 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence            3456888999999999999997643211        122       3556788899998888777655 57889999887


Q ss_pred             CceeEE
Q 008496          347 EEWKQQ  352 (563)
Q Consensus       347 ~~~~~~  352 (563)
                      +.|...
T Consensus        97 ~~W~~v  102 (219)
T PF07569_consen   97 GCWIRV  102 (219)
T ss_pred             ceeEEe
Confidence            777653

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>COG5290 IkappaB kinase complex, IKAP component [Transcription]

Probab=82.85  E-value=34  Score=36.97  Aligned_cols=217  Identities=14%  Similarity=0.292  Sum_probs=99.1

Q ss_pred             cCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecc------cCeEEEecCCC-ceEEEEeCCCeEEEEEc
Q 008496          313 KHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHS------GPTLDVDWRNN-VSFATSSTDNMIYVCKI  385 (563)
Q Consensus       313 ~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~------~~~~~~~~~~~-~~~~~~~~d~~i~~~~~  385 (563)
                      .-...|...+||.+.+.++....+.+|.+.+-.- ..+..+....      +.-+.+.|... ..|-.-+...     .+
T Consensus       110 ~v~nGIvaa~wS~DE~~~cvvt~~r~il~~~k~f-d~ise~~L~~~dl~ef~khi~VgWgkketqfrgk~~ra-----ql  183 (1243)
T COG5290         110 KVSNGIVAASWSADEKTWCVVTSTREILLFDKYF-DPISEYHLKKSDLVEFGKHIRVGWGKKETQFRGKGARA-----QL  183 (1243)
T ss_pred             cccCceEEEeeccCCceEEEEEcCceEEEEeccc-cccchhhcchhHHHHhccceEeeecccchhccccchhh-----hc
Confidence            3456788899999999777777788888876321 1111111111      11223444311 1111000000     00


Q ss_pred             CCCcceeeecCCCcce-------eEEEECCCCCEEEEEeCC----CcEEEEeCCCCceeeeec-ccCCCEEEEEEccCCC
Q 008496          386 GENRPIKTFAGHQGEV-------NCVKWDPTGSLLASCSDD----VTAKIWNMKQDKYVHDLR-EHSKEIYTIRWSPTGS  453 (563)
Q Consensus       386 ~~~~~~~~~~~h~~~i-------~~~~~~~~~~~las~s~d----g~i~iwd~~~~~~~~~~~-~~~~~i~~~~~~p~~~  453 (563)
                      +  .|...+.-..+.+       .-+.|.-|..+.+.+...    ..+|+|.- .+.. .... ..++.-..+.|-|.|+
T Consensus       184 r--dptmp~~vD~G~l~avd~~k~~i~wrgD~~y~~v~r~Ee~prra~rvysr-eg~l-ds~sep~~g~e~~LSWkpqgS  259 (1243)
T COG5290         184 R--DPTMPYMVDYGDLFAVDTNKKIIFWRGDTEYNLVGRSEERPRRAFRVYSR-EGQL-DSASEPVTGMEHQLSWKPQGS  259 (1243)
T ss_pred             c--CCCCcccccccceeEeeCCceEEEEccCcceeeecchhcccccceeeecc-cccc-ccccCCcccchhccccccCCc
Confidence            0  0100000011111       135566666666555432    23555541 1111 0000 1122234478999886


Q ss_pred             CCCCCCCcEEEEEEeCCC-----eEEEEeCC---CCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCee
Q 008496          454 GTNNPNQQLILASASFDS-----TVKLWDVE---LGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKI  525 (563)
Q Consensus       454 ~~~~~~~~~~l~s~s~dg-----~i~iwd~~---~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~  525 (563)
                               .+++-..||     .|.++...   -|..-..+ +...-+..++|+-....+|.+- .+.|++|-.++..-
T Consensus       260 ---------~~ati~td~~~~S~~ViFfErNGLrHGef~lr~-~~dEk~~~~~wn~~s~vlav~~-~n~~~lwttkNyhW  328 (1243)
T COG5290         260 ---------KYATIGTDGCSTSESVIFFERNGLRHGEFDLRV-GCDEKAFLENWNLLSTVLAVAE-GNLLKLWTTKNYHW  328 (1243)
T ss_pred             ---------eeeeeccCCCCCcceEEEEccCCcccCCccccC-CchhhhhhhhhhHHHHHHHHhh-cceEEEEEccceEE
Confidence                     567766554     24444321   11111111 1223356677877666666543 45799998776542


Q ss_pred             -EEEEecCCCEEEEEEcCCCC-EEEEE
Q 008496          526 -VKTYTGNGGIFEVCWNKEGD-KIAAC  550 (563)
Q Consensus       526 -~~~~~~~~~i~~l~w~~~g~-~la~~  550 (563)
                       ++.-..-.++.-+.|+|.-+ .|...
T Consensus       329 YLK~e~~ip~~s~vkwhpe~~nTl~f~  355 (1243)
T COG5290         329 YLKVERQIPGISYVKWHPEEKNTLLFR  355 (1243)
T ss_pred             EEEEeecCCCcceeeeccccCcEEEEe
Confidence             11111223466688999653 44333

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=82.55  E-value=52  Score=32.33  Aligned_cols=142  Identities=21%  Similarity=0.323  Sum_probs=78.1

Q ss_pred             cceeEEEECCCCCEEEEEeCCCc------EEEEeCCC--C--cee-----eeecccCC--------CEEEEEEccCCCCC
Q 008496          399 GEVNCVKWDPTGSLLASCSDDVT------AKIWNMKQ--D--KYV-----HDLREHSK--------EIYTIRWSPTGSGT  455 (563)
Q Consensus       399 ~~i~~~~~~~~~~~las~s~dg~------i~iwd~~~--~--~~~-----~~~~~~~~--------~i~~~~~~p~~~~~  455 (563)
                      +.++.+.+.+++..+++.|++|.      +..+++..  +  ..+     ..++...+        ..-+|++.+++.  
T Consensus        20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~--   97 (326)
T PF13449_consen   20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGS--   97 (326)
T ss_pred             CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCC--
Confidence            45678888876666777788887      54444432  1  001     01111111        112444433332  


Q ss_pred             CCCCCcEEEEEEeCC------CeEEEEeCCCCeEEEEec---------------CCCCCEEEEEEcCCCCEEEEEeC---
Q 008496          456 NNPNQQLILASASFD------STVKLWDVELGKLLYSLN---------------GHREPVYSLAFSPTGEYLASGSL---  511 (563)
Q Consensus       456 ~~~~~~~~l~s~s~d------g~i~iwd~~~~~~~~~~~---------------~h~~~i~~l~~spdg~~lasgs~---  511 (563)
                             ++++.-.+      ..|+-++.. |+.+..+.               ......-+|+++|||+.|.++..   
T Consensus        98 -------~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l  169 (326)
T PF13449_consen   98 -------FWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPL  169 (326)
T ss_pred             -------EEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccc
Confidence                   44454445      677777765 55543321               12345789999999996555432   


Q ss_pred             --CC-----------cEEEEecCC-CeeEEEE--e--------cCCCEEEEEEcCCCCEEEEE
Q 008496          512 --DK-----------SMHIWSLKE-GKIVKTY--T--------GNGGIFEVCWNKEGDKIAAC  550 (563)
Q Consensus       512 --dg-----------~v~iw~~~~-~~~~~~~--~--------~~~~i~~l~w~~~g~~la~~  550 (563)
                        |+           +|..||..+ +...+.|  .        ....|.++.+-++++.|+.-
T Consensus       170 ~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLE  232 (326)
T PF13449_consen  170 KQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLE  232 (326)
T ss_pred             cCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEE
Confidence              22           244455544 3333333  2        23568899999999987764

>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=82.36  E-value=61  Score=37.19  Aligned_cols=31  Identities=26%  Similarity=0.449  Sum_probs=26.0

Q ss_pred             CeEEEEECCCCCEEEEEeCCCeEEEEEcCCc
Q 008496          276 DVTTLDWNGEGTLLATGSYDGQARIWSTNGD  306 (563)
Q Consensus       276 ~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~  306 (563)
                      ....++|+|.-.+++.|..+|.+.++...+-
T Consensus        37 ~~~~~afD~~q~llai~t~tg~i~~yg~~~v   67 (993)
T KOG1983|consen   37 TPSALAFDPTQGLLAIGTRTGAIKIYGQPGV   67 (993)
T ss_pred             CCcceeeccccceEEEEEecccEEEecccce
Confidence            3456789999999999999999999976553

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=82.11  E-value=7  Score=41.71  Aligned_cols=72  Identities=19%  Similarity=0.210  Sum_probs=44.2

Q ss_pred             CCCCEEEEEeCCCeEEEEEcCC-----cee-Eee----------c-----------cCCCCEEEEEeCC----CCCEEEE
Q 008496          284 GEGTLLATGSYDGQARIWSTNG-----DLK-CTL----------S-----------KHKGPIFSLKWNK----KGDYLLT  332 (563)
Q Consensus       284 ~~g~~l~sg~~dg~i~vw~~~~-----~~~-~~~----------~-----------~h~~~V~~l~~~~----~~~~l~s  332 (563)
                      ++...++.+..||.+.......     ... ...          .           ...+.+..+..+.    +..+|++
T Consensus       156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t  235 (547)
T PF11715_consen  156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT  235 (547)
T ss_dssp             -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred             cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence            4666788888898887765432     111 110          0           0123455666666    6789999


Q ss_pred             eeCCCcEEEEECCCCceeEEeee
Q 008496          333 GSCDKTAIVWDVKTEEWKQQFEF  355 (563)
Q Consensus       333 ~s~D~~v~iwd~~~~~~~~~~~~  355 (563)
                      .+.|+++|+||+.++.++.....
T Consensus       236 l~~D~~LRiW~l~t~~~~~~~~~  258 (547)
T PF11715_consen  236 LSRDHTLRIWSLETGQCLATIDL  258 (547)
T ss_dssp             EETTSEEEEEETTTTCEEEEEET
T ss_pred             EeCCCeEEEEECCCCeEEEEecc
Confidence            99999999999999998665543

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PRK13684 Ycf48-like protein; Provisional

Probab=81.83  E-value=56  Score=32.23  Aligned_cols=150  Identities=9%  Similarity=0.072  Sum_probs=80.0

Q ss_pred             ccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceee-ecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeee
Q 008496          357 SGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKT-FAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHD  435 (563)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~-~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~  435 (563)
                      ...+.++...++..++..+..|.++.-.......-.. ..+-...+.++.+.+++++++.+ ..|.+++=..+.+..-..
T Consensus       172 ~g~~~~i~~~~~g~~v~~g~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW~~  250 (334)
T PRK13684        172 AGVVRNLRRSPDGKYVAVSSRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESWSK  250 (334)
T ss_pred             cceEEEEEECCCCeEEEEeCCceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCcccc
Confidence            3445666666666677777777666431111111111 12234568899999999887665 457665322233221111


Q ss_pred             ecc----cCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEec---CCCCCEEEEEEcCCCCEEEE
Q 008496          436 LRE----HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLN---GHREPVYSLAFSPTGEYLAS  508 (563)
Q Consensus       436 ~~~----~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~---~h~~~i~~l~~spdg~~las  508 (563)
                      ...    -...++++.+.|.+.         ++ .++.+|.|.. ....|+.-....   .-....+.+.|..+++.+++
T Consensus       251 ~~~~~~~~~~~l~~v~~~~~~~---------~~-~~G~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (334)
T PRK13684        251 PIIPEITNGYGYLDLAYRTPGE---------IW-AGGGNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVL  319 (334)
T ss_pred             ccCCccccccceeeEEEcCCCC---------EE-EEcCCCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEE
Confidence            111    123467788877543         33 4456676543 334343322221   22235788888877777664


Q ss_pred             EeCCCcEEEEe
Q 008496          509 GSLDKSMHIWS  519 (563)
Q Consensus       509 gs~dg~v~iw~  519 (563)
                       +..|.|..|+
T Consensus       320 -G~~G~il~~~  329 (334)
T PRK13684        320 -GQRGVLLRYV  329 (334)
T ss_pred             -CCCceEEEec
Confidence             5577777665

>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)

Probab=81.30  E-value=17  Score=35.24  Aligned_cols=91  Identities=20%  Similarity=0.337  Sum_probs=0.0

Q ss_pred             CCeEEEEeCCCCeEEEEec---------------------------CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCC
Q 008496          470 DSTVKLWDVELGKLLYSLN---------------------------GHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKE  522 (563)
Q Consensus       470 dg~i~iwd~~~~~~~~~~~---------------------------~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~  522 (563)
                      |+.+.--|+.+++.+++..                           ..---|++|...++|.+|+|.-.-..|.+.+.++
T Consensus        95 d~~~~EiDi~TgevlfeW~a~DH~~~~~~~~~~~~~~~~g~~~~~~~D~~HiNsV~~~~~G~yLiS~R~~~~i~~I~~~t  174 (299)
T PF14269_consen   95 DDVFQEIDIETGEVLFEWSASDHVDPNDSYDSQDPLPGSGGSSSFPWDYFHINSVDKDDDGDYLISSRNTSTIYKIDPST  174 (299)
T ss_pred             cceeEEeccCCCCEEEEEEhhheecccccccccccccCCCcCCCCCCCccEeeeeeecCCccEEEEecccCEEEEEECCC


Q ss_pred             CeeEEEEecC-CCEEE-----EEEcCCCCEEEEEECCCeEEEEE
Q 008496          523 GKIVKTYTGN-GGIFE-----VCWNKEGDKIAACFANHTVCVLD  560 (563)
Q Consensus       523 ~~~~~~~~~~-~~i~~-----l~w~~~g~~la~~~~~~~v~v~~  560 (563)
                      |+++..+.+. ..=+.     ++|..|-+.+-.+..++.|.|+|
T Consensus       175 G~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFD  218 (299)
T PF14269_consen  175 GKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFD  218 (299)
T ss_pred             CcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEc

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=80.88  E-value=67  Score=32.53  Aligned_cols=220  Identities=12%  Similarity=0.165  Sum_probs=96.3

Q ss_pred             CCCEEEEee-CCCcEEEEECCCC----ceeEEeee---cc----cCeEEEec-CCCceEEEE--eC----CCeEEEEEcC
Q 008496          326 KGDYLLTGS-CDKTAIVWDVKTE----EWKQQFEF---HS----GPTLDVDW-RNNVSFATS--ST----DNMIYVCKIG  386 (563)
Q Consensus       326 ~~~~l~s~s-~D~~v~iwd~~~~----~~~~~~~~---~~----~~~~~~~~-~~~~~~~~~--~~----d~~i~~~~~~  386 (563)
                      ..++|+..+ ..+.|.|.|+.+.    ++.+.++.   ..    .....+.. .+...++++  ..    -|.+.+.+-.
T Consensus        86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~  165 (461)
T PF05694_consen   86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE  165 (461)
T ss_dssp             -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred             cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence            446676666 5678999987643    33333332   11    01111212 222233332  11    2345555554


Q ss_pred             CCcceeeecCCCc---ceeEEEECCCCCEEEEEe--------------------CCCcEEEEeCCCCceeeeecccC--C
Q 008496          387 ENRPIKTFAGHQG---EVNCVKWDPTGSLLASCS--------------------DDVTAKIWNMKQDKYVHDLREHS--K  441 (563)
Q Consensus       387 ~~~~~~~~~~h~~---~i~~~~~~~~~~~las~s--------------------~dg~i~iwd~~~~~~~~~~~~~~--~  441 (563)
                      +...........+   .--.+-|.|..+.++|..                    .-.++.+||+.+.+.++++.--.  .
T Consensus       166 tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~  245 (461)
T PF05694_consen  166 TFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQ  245 (461)
T ss_dssp             T--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEE
T ss_pred             cccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCC
Confidence            4444433332111   123456677777666653                    23579999999999888776432  2


Q ss_pred             CEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeC-CCCe----EEEEecC-----C------------CCCEEEEEE
Q 008496          442 EIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDV-ELGK----LLYSLNG-----H------------REPVYSLAF  499 (563)
Q Consensus       442 ~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~-~~~~----~~~~~~~-----h------------~~~i~~l~~  499 (563)
                      ....|+|..+.      ....-++.+...++|..|-- +.++    .+..+..     -            ..-|+.|..
T Consensus       246 ~pLEvRflH~P------~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~i  319 (461)
T PF05694_consen  246 MPLEVRFLHDP------DANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILI  319 (461)
T ss_dssp             EEEEEEE-SST------T--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE
T ss_pred             ceEEEEecCCC------CccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEE
Confidence            34567776543      22233444445555555533 3332    2222211     1            123789999


Q ss_pred             cCCCCEEEEEe-CCCcEEEEecCCC---eeEEEEe-c----------------CCCEEEEEEcCCCCEEEEEE
Q 008496          500 SPTGEYLASGS-LDKSMHIWSLKEG---KIVKTYT-G----------------NGGIFEVCWNKEGDKIAACF  551 (563)
Q Consensus       500 spdg~~lasgs-~dg~v~iw~~~~~---~~~~~~~-~----------------~~~i~~l~w~~~g~~la~~~  551 (563)
                      |.|.++|.... .+|.|+-||+.+-   +++.... +                .++..=|..|.||++|.+..
T Consensus       320 SlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn  392 (461)
T PF05694_consen  320 SLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN  392 (461)
T ss_dssp             -TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred             ccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence            99999986555 6899999999764   3333221 1                12234477788999988763

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	563
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		5e-33
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		6e-29
1r5m_A	425	Crystal Structure Of The C-Terminal Wd40 Domain Of		3e-27
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		1e-25
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		9e-20
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		8e-08
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		1e-25
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		1e-19
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		8e-08
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		1e-25
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		7e-20
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		5e-08
2gnq_A	336	Structure Of Wdr5 Length = 336		1e-25
2gnq_A	336	Structure Of Wdr5 Length = 336		7e-20
2gnq_A	336	Structure Of Wdr5 Length = 336		5e-08
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		1e-25
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		8e-20
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		6e-08
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		1e-25
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		8e-20
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		7e-08
2h9l_A	329	Wdr5delta23 Length = 329		1e-25
2h9l_A	329	Wdr5delta23 Length = 329		9e-20
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		2e-25
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		9e-20
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		7e-08
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		2e-25
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		9e-20
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		6e-08
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		2e-25
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		1e-19
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		7e-08
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		2e-25
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		9e-20
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		7e-08
3fm0_A	345	Crystal Structure Of Wd40 Protein Ciao1 Length = 34		2e-25
3fm0_A	345	Crystal Structure Of Wd40 Protein Ciao1 Length = 34		2e-14
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		2e-25
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		1e-19
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		8e-08
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		2e-25
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		1e-19
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		1e-07
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		2e-25
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		1e-19
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		7e-08
2g99_A	308	Structural Basis For The Specific Recognition Of Me		2e-25
2g99_A	308	Structural Basis For The Specific Recognition Of Me		1e-19
2g99_A	308	Structural Basis For The Specific Recognition Of Me		7e-08
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		1e-24
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		4e-19
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		3e-24
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		4e-19
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		2e-08
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		5e-24
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		1e-18
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		2e-08
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		2e-21
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		2e-06
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		2e-19
2xtc_A	90	Structure Of The Tbl1 Tetramerisation Domain Length		2e-18
3mks_B	464	Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH		4e-18
2xtd_A	71	Structure Of The Tbl1 Tetramerisation Domain Length		4e-18
1nex_B	464	Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp		2e-17
2pbi_B	354	The Multifunctional Nature Of Gbeta5RGS9 REVEALED F		2e-17
2pbi_B	354	The Multifunctional Nature Of Gbeta5RGS9 REVEALED F		1e-10
2pbi_B	354	The Multifunctional Nature Of Gbeta5RGS9 REVEALED F		2e-09
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		7e-17
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		6e-12
1got_B	340	Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer		1e-16
1got_B	340	Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer		1e-10
1a0r_B	340	Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-		2e-16
1a0r_B	340	Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-		1e-10
1gg2_B	340	G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet		3e-16
1gg2_B	340	G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet		7e-11
3sn6_B	351	Crystal Structure Of The Beta2 Adrenergic Receptor-		4e-16
3sn6_B	351	Crystal Structure Of The Beta2 Adrenergic Receptor-		7e-11
2bcj_B	340	Crystal Structure Of G Protein-coupled Receptor Kin		4e-16
2bcj_B	340	Crystal Structure Of G Protein-coupled Receptor Kin		8e-11
3iz6_a	380	Localization Of The Small Subunit Ribosomal Protein		4e-16
2xzm_R	343	Crystal Structure Of The Eukaryotic 40s Ribosomal S		6e-16
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		3e-15
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		4e-15
3ow8_A	321	Crystal Structure Of The Wd Repeat-Containing Prote		5e-15
3dm0_A	694	Maltose Binding Protein Fusion With Rack1 From A. T		5e-15
3zey_7	318	High-resolution Cryo-electron Microscopy Structure		6e-15
3izb_a	319	Localization Of The Small Subunit Ribosomal Protein		2e-14
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		2e-14
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		2e-14
3rfg_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		2e-14
1trj_A	314	Homology Model Of Yeast Rack1 Protein Fitted Into 1		3e-14
3rfh_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		3e-14
3jyv_R	313	Structure Of The 40s Rrna And Proteins And PE TRNA		3e-14
3frx_A	319	Crystal Structure Of The Yeast Orthologue Of Rack1,		1e-13
4gga_A	420	Structural Analysis Of Human Cdc20 Supports Multi-S		3e-13
4ggd_A	431	Structural Analysis Of Human Cdc20 Supports Multisi		3e-13
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		4e-13
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		8e-07
3mkq_A	814	Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco		6e-13
4ggc_A	318	Structural Analysis Of Human Cdc20 Supports Multi-S		8e-13
2xyi_A	430	Crystal Structure Of Nurf55 In Complex With A H4 Pe		1e-12
2xyi_A	430	Crystal Structure Of Nurf55 In Complex With A H4 Pe		9e-09
3c99_A	432	Structural Basis Of Histone H4 Recognition By P55 L		1e-12
3c99_A	432	Structural Basis Of Histone H4 Recognition By P55 L		1e-08
2yba_A	422	Crystal Structure Of Nurf55 In Complex With Histone		1e-12
2yba_A	422	Crystal Structure Of Nurf55 In Complex With Histone		1e-08
2ynp_A	604	Yeast Betaprime Cop 1-604 With Ktktn Motif Length =		1e-12
2yno_A	310	Yeast Betaprime Cop 1-304h6 Length = 310		1e-12
2ynn_A	304	Yeast Betaprime Cop 1-304 With Ktktn Motif Length =		1e-12
2hes_X	330	Cytosolic Iron-sulphur Assembly Protein- 1 Length =		5e-12
2hes_X	330	Cytosolic Iron-sulphur Assembly Protein- 1 Length =		2e-08
3gfc_A	425	Crystal Structure Of Histone-Binding Protein Rbbp4		1e-11
3gfc_A	425	Crystal Structure Of Histone-Binding Protein Rbbp4		4e-08
3cfv_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		3e-11
3cfv_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		7e-07
3cfs_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		3e-11
3cfs_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		7e-07
1nr0_A	611	Two Seven-Bladed Beta-Propeller Domains Revealed By		4e-10
1nr0_A	611	Two Seven-Bladed Beta-Propeller Domains Revealed By		1e-09
1nr0_A	611	Two Seven-Bladed Beta-Propeller Domains Revealed By		7e-04
4aez_A	401	Crystal Structure Of Mitotic Checkpoint Complex Len		1e-09
4aez_A	401	Crystal Structure Of Mitotic Checkpoint Complex Len		4e-09
2b4e_A	402	Crystal Structure Of Murine Coronin-1: Monoclinic F		3e-09
3jrp_A	379	Sec13 With Nup145c (Aa109-179) Insertion Blade Leng		5e-08
3jro_A	753	Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice		6e-08
2pm6_B	297	Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF		1e-07
2pm9_B	297	Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT O		4e-07
3zwl_B	369	Structure Of Eukaryotic Translation Initiation Fact		1e-06
3ewe_A	349	Crystal Structure Of The Nup85SEH1 COMPLEX Length =		1e-06
3f3f_A	351	Crystal Structure Of The Nucleoporin Pair Nup85-Seh		1e-06
3f3p_A	351	Crystal Structure Of The Nucleoporin Pair Nup85-Seh		2e-06
3bg0_A	316	Architecture Of A Coat For The Nuclear Pore Membran		2e-06
3bg0_A	316	Architecture Of A Coat For The Nuclear Pore Membran		3e-04
3odt_A	313	Crystal Structure Of Wd40 Beta Propeller Domain Of		2e-06
3mmy_A	368	Structural And Functional Analysis Of The Interacti		9e-06
3mmy_A	368	Structural And Functional Analysis Of The Interacti		7e-04
3dxk_C	372	Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND IN		1e-05
3dxk_C	372	Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND IN		2e-04
4a11_B	408	Structure Of The Hsddb1-Hscsa Complex Length = 408		1e-05
1k8k_C	372	Crystal Structure Of Arp23 COMPLEX Length = 372		1e-05
1k8k_C	372	Crystal Structure Of Arp23 COMPLEX Length = 372		2e-04
2pm7_B	297	Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF		2e-05
3acp_A	417	Crystal Structure Of Yeast Rpn14, A Chaperone Of Th		3e-05
2aq5_A	402	Crystal Structure Of Murine Coronin-1 Length = 402		3e-05
3vl1_A	420	Crystal Structure Of Yeast Rpn14 Length = 420		3e-05
3ei4_B	436	Structure Of The Hsddb1-Hsddb2 Complex Length = 436		8e-05
4e5z_B	436	Damaged Dna Induced Uv-Damaged Dna-Binding Protein		9e-05
4e54_B	435	Damaged Dna Induced Uv-Damaged Dna-Binding Protein		9e-05
1gxr_A	337	Wd40 Region Of Human Groucho/tle1 Length = 337		1e-04
1gxr_A	337	Wd40 Region Of Human Groucho/tle1 Length = 337		3e-04
2pm9_A	416	Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT O		2e-04
3dwl_C	377	Crystal Structure Of Fission Yeast Arp2/3 Complex L		6e-04

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score =  139 bits (349), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 104/374 (27%), Positives = 181/374 (48%), Gaps = 35/374 (9%)
Query: 187 PEPMDIATTSASESFEIPNSDVTILE---GHTSEVCACAWSPXXXXXXXXXXDSTARIWT 243
           P+   IA+ S  ++ ++ N +  +L+   GH+S V   A+SP          D T ++W 
Sbjct: 26  PDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN 85
Query: 244 IADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWST 303
                     +NG L   +  H        S  V  + ++ +G  +A+ S D   ++W+ 
Sbjct: 86  ----------RNGQLLQTLTGH--------SSSVRGVAFSPDGQTIASASDDKTVKLWNR 127
Query: 304 NGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDV 363
           NG L  TL+ H   ++ + ++  G  + + S DKT  +W+ +  +  Q    HS     V
Sbjct: 128 NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGV 186
Query: 364 DWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAK 423
            +  +     S++D+          + ++T  GH   V  V + P G  +AS SDD T K
Sbjct: 187 AFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVK 246
Query: 424 IWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKL 483
           +WN +  + +  L  HS  +  + + P G           +ASAS D TVKLW+   G+L
Sbjct: 247 LWN-RNGQLLQTLTGHSSSVNGVAFRPDGQ---------TIASASDDKTVKLWNRN-GQL 295
Query: 484 LYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTG-NGGIFEVCWNK 542
           L +L GH   V+ +AFSP G+ +AS S DK++ +W+ + G+ ++T TG +  ++ V ++ 
Sbjct: 296 LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQHLQTLTGHSSSVWGVAFSP 354
Query: 543 EGDKIAACFANHTV 556
           +G  IA+   + TV
Sbjct: 355 DGQTIASASDDKTV 368

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score =  125 bits (314), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 86/291 (29%), Positives = 148/291 (50%), Gaps = 14/291 (4%)
Query: 267 KGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKK 326
           + R    S  V  + ++ +G  +A+ S D   ++W+ NG L  TL+ H   ++ + ++  
Sbjct: 9   RNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPD 68
Query: 327 GDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIG 386
           G  + + S DKT  +W+ +  +  Q    HS     V +  +     S++D+        
Sbjct: 69  GQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR 127
Query: 387 ENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTI 446
             + ++T  GH   V  V + P G  +AS SDD T K+WN +  + +  L  HS  ++ +
Sbjct: 128 NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGV 186
Query: 447 RWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYL 506
            +SP G           +ASAS D TVKLW+   G+LL +L GH   V  +AFSP G+ +
Sbjct: 187 AFSPDGQ---------TIASASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSPDGQTI 236
Query: 507 ASGSLDKSMHIWSLKEGKIVKTYTG-NGGIFEVCWNKEGDKIAACFANHTV 556
           AS S DK++ +W+ + G++++T TG +  +  V +  +G  IA+   + TV
Sbjct: 237 ASASDDKTVKLWN-RNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTV 286

>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2 Length = 425

Iteration: 1
 Score =  119 bits (299), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 94/378 (24%), Positives = 166/378 (43%), Gaps = 54/378 (14%)
Query: 218 VCACAWSPXXXXXXXX-XXDSTARIWTIADGTSNGGAQNGPLNVLV-LKH---VKGRTNE 272
           + +  W+P           +S AR+  I + T   G +   L ++  L+H   +   + +
Sbjct: 48  IVSSTWNPLDESILAYGEKNSVARLARIVE-TDQEGKKYWKLTIIAELRHPFALSASSGK 106
Query: 273 KSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLT 332
            +  VT L W+ +G  + TG  +G+ R+W+  G L   L+ H+ PI S+KWNK G ++++
Sbjct: 107 TTNQVTCLAWSHDGNSIVTGVENGELRLWNKTGALLNVLNFHRAPIVSVKWNKDGTHIIS 166
Query: 333 GSCDKTAIVWDVKTEEWKQQFEF------------HSGP---TLDVDWRNNVSFATSSTD 377
              +   I+W+V +    Q FE             HSG     +DV+W ++  F      
Sbjct: 167 MDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPK 226
Query: 378 NMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLR 437
             I+V +I E  P     GH G ++ ++++ T  LL S SDD T +IW+       +   
Sbjct: 227 GAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFY 286
Query: 438 EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSL 497
            HS+ I +  W          + ++I  S S D +V+LW ++   LL        P+++ 
Sbjct: 287 GHSQSIVSASWV--------GDDKVI--SCSMDGSVRLWSLKQNTLLALSIVDGVPIFAG 336
Query: 498 AFSPTGEYLASGSLDKSMHIWSLKE--GKIVKTYTGNGG--------------------- 534
             S  G+  A   +D  ++++ LK+   K    Y    G                     
Sbjct: 337 RISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDY 396
Query: 535 IFEVCWNKEGDKIAACFA 552
           IF++ WN  G+KI+  ++
Sbjct: 397 IFDLSWNCAGNKISVAYS 414

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score =  114 bits (286), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 65/231 (28%), Positives = 122/231 (52%), Gaps = 11/231 (4%)
Query: 304 NGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDV 363
           N  LK TL+ H   + S+K++  G++L + S DK   +W     ++++    H     DV
Sbjct: 15  NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 74
Query: 364 DWRNNVSFATSSTDN-MIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTA 422
            W ++ +   S++D+  + +  +   + +KT  GH   V C  ++P  +L+ S S D + 
Sbjct: 75  AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 134
Query: 423 KIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK 482
           +IW++K  K +  L  HS  +  + ++  GS         ++ S+S+D   ++WD   G+
Sbjct: 135 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS---------LIVSSSYDGLCRIWDTASGQ 185
Query: 483 LLYSL-NGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGN 532
            L +L +    PV  + FSP G+Y+ + +LD ++ +W   +GK +KTYTG+
Sbjct: 186 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 236

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 95.1 bits (235), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 59/193 (30%), Positives = 99/193 (51%), Gaps = 11/193 (5%)
Query: 371 FATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD 430
            A+SS D +I +    + +  KT +GH+  ++ V W    +LL S SDD T KIW++   
Sbjct: 41  LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 100
Query: 431 KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGH 490
           K +  L+ HS  ++   ++P         Q  ++ S SFD +V++WDV+ GK L +L  H
Sbjct: 101 KCLKTLKGHSNYVFCCNFNP---------QSNLIVSGSFDESVRIWDVKTGKCLKTLPAH 151
Query: 491 REPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYT--GNGGIFEVCWNKEGDKIA 548
            +PV ++ F+  G  + S S D    IW    G+ +KT     N  +  V ++  G  I 
Sbjct: 152 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 211
Query: 549 ACFANHTVCVLDF 561
           A   ++T+ + D+
Sbjct: 212 AATLDNTLKLWDY 224

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 55.5 bits (132), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 483 LLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNG-GIFEVCWN 541
           L ++L GH + V S+ FSP GE+LAS S DK + IW   +GK  KT +G+  GI +V W+
Sbjct: 18  LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 77
Query: 542 KEGDKIAACFANHTVCVLD 560
            + + + +   + T+ + D
Sbjct: 78  SDSNLLVSASDDKTLKIWD 96

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score =  114 bits (286), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 65/231 (28%), Positives = 122/231 (52%), Gaps = 11/231 (4%)
Query: 304 NGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDV 363
           N  LK TL+ H   + S+K++  G++L + S DK   +W     ++++    H     DV
Sbjct: 15  NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 74
Query: 364 DWRNNVSFATSSTDN-MIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTA 422
            W ++ +   S++D+  + +  +   + +KT  GH   V C  ++P  +L+ S S D + 
Sbjct: 75  AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 134
Query: 423 KIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK 482
           +IW++K  K +  L  HS  +  + ++  GS         ++ S+S+D   ++WD   G+
Sbjct: 135 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS---------LIVSSSYDGLCRIWDTASGQ 185
Query: 483 LLYSL-NGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGN 532
            L +L +    PV  + FSP G+Y+ + +LD ++ +W   +GK +KTYTG+
Sbjct: 186 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 236

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 95.1 bits (235), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 59/193 (30%), Positives = 99/193 (51%), Gaps = 11/193 (5%)
Query: 371 FATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD 430
            A+SS D +I +    + +  KT +GH+  ++ V W    +LL S SDD T KIW++   
Sbjct: 41  LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 100
Query: 431 KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGH 490
           K +  L+ HS  ++   ++P         Q  ++ S SFD +V++WDV+ GK L +L  H
Sbjct: 101 KCLKTLKGHSNYVFCCNFNP---------QSNLIVSGSFDESVRIWDVKTGKCLKTLPAH 151
Query: 491 REPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYT--GNGGIFEVCWNKEGDKIA 548
            +PV ++ F+  G  + S S D    IW    G+ +KT     N  +  V ++  G  I 
Sbjct: 152 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 211
Query: 549 ACFANHTVCVLDF 561
           A   ++T+ + D+
Sbjct: 212 AATLDNTLKLWDY 224

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 55.5 bits (132), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 483 LLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNG-GIFEVCWN 541
           L ++L GH + V S+ FSP GE+LAS S DK + IW   +GK  KT +G+  GI +V W+
Sbjct: 18  LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 77
Query: 542 KEGDKIAACFANHTVCVLD 560
            + + + +   + T+ + D
Sbjct: 78  SDSNLLVSASDDKTLKIWD 96

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score =  103 bits (256), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 81/293 (27%), Positives = 146/293 (49%), Gaps = 15/293 (5%)
Query: 249 SNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIW-STNGDL 307
           S+   Q+ P  V     +K      +K V+++ ++  G  LA+ S D   +IW + +G  
Sbjct: 20  SSSATQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF 79
Query: 308 KCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN 367
           + T+S HK  I  + W+   + L++ S DKT  +WDV + +  +  + HS      ++  
Sbjct: 80  EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP 139
Query: 368 NVSFATS-STDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWN 426
             +   S S D  + +  +   + +KT   H   V+ V ++  GSL+ S S D   +IW+
Sbjct: 140 QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 199
Query: 427 MKQDKYVHDL-REHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLY 485
               + +  L  + +  +  +++SP G        + ILA A+ D+T+KLWD   GK L 
Sbjct: 200 TASGQCLKTLIDDDNPPVSFVKFSPNG--------KYILA-ATLDNTLKLWDYSKGKCLK 250
Query: 486 SLNGHREPVYSLA--FSPTG-EYLASGSLDKSMHIWSLKEGKIVKTYTGNGGI 535
           +  GH+   Y +   FS TG +++ SGS D  ++IW+L+  +IV+   G+  +
Sbjct: 251 TYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDV 303

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 95.5 bits (236), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 59/193 (30%), Positives = 99/193 (51%), Gaps = 11/193 (5%)
Query: 371 FATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD 430
            A+SS D +I +    + +  KT +GH+  ++ V W    +LL S SDD T KIW++   
Sbjct: 60  LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 119
Query: 431 KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGH 490
           K +  L+ HS  ++   ++P         Q  ++ S SFD +V++WDV+ GK L +L  H
Sbjct: 120 KCLKTLKGHSNYVFCCNFNP---------QSNLIVSGSFDESVRIWDVKTGKCLKTLPAH 170
Query: 491 REPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYT--GNGGIFEVCWNKEGDKIA 548
            +PV ++ F+  G  + S S D    IW    G+ +KT     N  +  V ++  G  I 
Sbjct: 171 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 230
Query: 549 ACFANHTVCVLDF 561
           A   ++T+ + D+
Sbjct: 231 AATLDNTLKLWDY 243

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 56.2 bits (134), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 483 LLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNG-GIFEVCWN 541
           L ++L GH + V S+ FSP GE+LAS S DK + IW   +GK  KT +G+  GI +V W+
Sbjct: 37  LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 96
Query: 542 KEGDKIAACFANHTVCVLD 560
            + + + +   + T+ + D
Sbjct: 97  SDSNLLVSASDDKTLKIWD 115

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score =  103 bits (256), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 81/293 (27%), Positives = 146/293 (49%), Gaps = 15/293 (5%)
Query: 249 SNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIW-STNGDL 307
           S+   Q+ P  V     +K      +K V+++ ++  G  LA+ S D   +IW + +G  
Sbjct: 22  SSSATQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF 81
Query: 308 KCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN 367
           + T+S HK  I  + W+   + L++ S DKT  +WDV + +  +  + HS      ++  
Sbjct: 82  EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP 141
Query: 368 NVSFATS-STDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWN 426
             +   S S D  + +  +   + +KT   H   V+ V ++  GSL+ S S D   +IW+
Sbjct: 142 QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 201
Query: 427 MKQDKYVHDL-REHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLY 485
               + +  L  + +  +  +++SP G        + ILA A+ D+T+KLWD   GK L 
Sbjct: 202 TASGQCLKTLIDDDNPPVSFVKFSPNG--------KYILA-ATLDNTLKLWDYSKGKCLK 252
Query: 486 SLNGHREPVYSLA--FSPTG-EYLASGSLDKSMHIWSLKEGKIVKTYTGNGGI 535
           +  GH+   Y +   FS TG +++ SGS D  ++IW+L+  +IV+   G+  +
Sbjct: 253 TYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDV 305

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 95.5 bits (236), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 59/193 (30%), Positives = 99/193 (51%), Gaps = 11/193 (5%)
Query: 371 FATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD 430
            A+SS D +I +    + +  KT +GH+  ++ V W    +LL S SDD T KIW++   
Sbjct: 62  LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 121
Query: 431 KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGH 490
           K +  L+ HS  ++   ++P         Q  ++ S SFD +V++WDV+ GK L +L  H
Sbjct: 122 KCLKTLKGHSNYVFCCNFNP---------QSNLIVSGSFDESVRIWDVKTGKCLKTLPAH 172
Query: 491 REPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYT--GNGGIFEVCWNKEGDKIA 548
            +PV ++ F+  G  + S S D    IW    G+ +KT     N  +  V ++  G  I 
Sbjct: 173 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 232
Query: 549 ACFANHTVCVLDF 561
           A   ++T+ + D+
Sbjct: 233 AATLDNTLKLWDY 245

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 56.2 bits (134), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 483 LLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNG-GIFEVCWN 541
           L ++L GH + V S+ FSP GE+LAS S DK + IW   +GK  KT +G+  GI +V W+
Sbjct: 39  LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 98
Query: 542 KEGDKIAACFANHTVCVLD 560
            + + + +   + T+ + D
Sbjct: 99  SDSNLLVSASDDKTLKIWD 117

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score =  114 bits (285), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 65/231 (28%), Positives = 122/231 (52%), Gaps = 11/231 (4%)
Query: 304 NGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDV 363
           N  LK TL+ H   + S+K++  G++L + S DK   +W     ++++    H     DV
Sbjct: 18  NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 77
Query: 364 DWRNNVSFATSSTDN-MIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTA 422
            W ++ +   S++D+  + +  +   + +KT  GH   V C  ++P  +L+ S S D + 
Sbjct: 78  AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 137
Query: 423 KIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK 482
           +IW++K  K +  L  HS  +  + ++  GS         ++ S+S+D   ++WD   G+
Sbjct: 138 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS---------LIVSSSYDGLCRIWDTASGQ 188
Query: 483 LLYSL-NGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGN 532
            L +L +    PV  + FSP G+Y+ + +LD ++ +W   +GK +KTYTG+
Sbjct: 189 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 239

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 95.1 bits (235), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 59/193 (30%), Positives = 99/193 (51%), Gaps = 11/193 (5%)
Query: 371 FATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD 430
            A+SS D +I +    + +  KT +GH+  ++ V W    +LL S SDD T KIW++   
Sbjct: 44  LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 103
Query: 431 KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGH 490
           K +  L+ HS  ++   ++P         Q  ++ S SFD +V++WDV+ GK L +L  H
Sbjct: 104 KCLKTLKGHSNYVFCCNFNP---------QSNLIVSGSFDESVRIWDVKTGKCLKTLPAH 154
Query: 491 REPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYT--GNGGIFEVCWNKEGDKIA 548
            +PV ++ F+  G  + S S D    IW    G+ +KT     N  +  V ++  G  I 
Sbjct: 155 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 214
Query: 549 ACFANHTVCVLDF 561
           A   ++T+ + D+
Sbjct: 215 AATLDNTLKLWDY 227

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 483 LLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNG-GIFEVCWN 541
           L ++L GH + V S+ FSP GE+LAS S DK + IW   +GK  KT +G+  GI +V W+
Sbjct: 21  LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 80
Query: 542 KEGDKIAACFANHTVCVLD 560
            + + + +   + T+ + D
Sbjct: 81  SDSNLLVSASDDKTLKIWD 99

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score =  114 bits (285), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 65/231 (28%), Positives = 122/231 (52%), Gaps = 11/231 (4%)
Query: 304 NGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDV 363
           N  LK TL+ H   + S+K++  G++L + S DK   +W     ++++    H     DV
Sbjct: 18  NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 77
Query: 364 DWRNNVSFATSSTDN-MIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTA 422
            W ++ +   S++D+  + +  +   + +KT  GH   V C  ++P  +L+ S S D + 
Sbjct: 78  AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 137
Query: 423 KIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK 482
           +IW++K  K +  L  HS  +  + ++  GS         ++ S+S+D   ++WD   G+
Sbjct: 138 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS---------LIVSSSYDGLCRIWDTASGQ 188
Query: 483 LLYSL-NGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGN 532
            L +L +    PV  + FSP G+Y+ + +LD ++ +W   +GK +KTYTG+
Sbjct: 189 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 239

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 95.1 bits (235), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 59/193 (30%), Positives = 99/193 (51%), Gaps = 11/193 (5%)
Query: 371 FATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD 430
            A+SS D +I +    + +  KT +GH+  ++ V W    +LL S SDD T KIW++   
Sbjct: 44  LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 103
Query: 431 KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGH 490
           K +  L+ HS  ++   ++P         Q  ++ S SFD +V++WDV+ GK L +L  H
Sbjct: 104 KCLKTLKGHSNYVFCCNFNP---------QSNLIVSGSFDESVRIWDVKTGKCLKTLPAH 154
Query: 491 REPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYT--GNGGIFEVCWNKEGDKIA 548
            +PV ++ F+  G  + S S D    IW    G+ +KT     N  +  V ++  G  I 
Sbjct: 155 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 214
Query: 549 ACFANHTVCVLDF 561
           A   ++T+ + D+
Sbjct: 215 AATLDNTLKLWDY 227

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 55.8 bits (133), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 483 LLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNG-GIFEVCWN 541
           L ++L GH + V S+ FSP GE+LAS S DK + IW   +GK  KT +G+  GI +V W+
Sbjct: 21  LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 80
Query: 542 KEGDKIAACFANHTVCVLD 560
            + + + +   + T+ + D
Sbjct: 81  SDSNLLVSASDDKTLKIWD 99

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score =  114 bits (285), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 65/231 (28%), Positives = 122/231 (52%), Gaps = 11/231 (4%)
Query: 304 NGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDV 363
           N  LK TL+ H   + S+K++  G++L + S DK   +W     ++++    H     DV
Sbjct: 29  NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 88
Query: 364 DWRNNVSFATSSTDN-MIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTA 422
            W ++ +   S++D+  + +  +   + +KT  GH   V C  ++P  +L+ S S D + 
Sbjct: 89  AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 148
Query: 423 KIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK 482
           +IW++K  K +  L  HS  +  + ++  GS         ++ S+S+D   ++WD   G+
Sbjct: 149 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS---------LIVSSSYDGLCRIWDTASGQ 199
Query: 483 LLYSL-NGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGN 532
            L +L +    PV  + FSP G+Y+ + +LD ++ +W   +GK +KTYTG+
Sbjct: 200 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 250

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 95.1 bits (235), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 59/193 (30%), Positives = 99/193 (51%), Gaps = 11/193 (5%)
Query: 371 FATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD 430
            A+SS D +I +    + +  KT +GH+  ++ V W    +LL S SDD T KIW++   
Sbjct: 55  LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 114
Query: 431 KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGH 490
           K +  L+ HS  ++   ++P         Q  ++ S SFD +V++WDV+ GK L +L  H
Sbjct: 115 KCLKTLKGHSNYVFCCNFNP---------QSNLIVSGSFDESVRIWDVKTGKCLKTLPAH 165
Query: 491 REPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYT--GNGGIFEVCWNKEGDKIA 548
            +PV ++ F+  G  + S S D    IW    G+ +KT     N  +  V ++  G  I 
Sbjct: 166 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 225
Query: 549 ACFANHTVCVLDF 561
           A   ++T+ + D+
Sbjct: 226 AATLDNTLKLWDY 238

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score =  114 bits (285), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 65/231 (28%), Positives = 122/231 (52%), Gaps = 11/231 (4%)
Query: 304 NGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDV 363
           N  LK TL+ H   + S+K++  G++L + S DK   +W     ++++    H     DV
Sbjct: 18  NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 77
Query: 364 DWRNNVSFATSSTDN-MIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTA 422
            W ++ +   S++D+  + +  +   + +KT  GH   V C  ++P  +L+ S S D + 
Sbjct: 78  AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 137
Query: 423 KIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK 482
           +IW++K  K +  L  HS  +  + ++  GS         ++ S+S+D   ++WD   G+
Sbjct: 138 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS---------LIVSSSYDGLCRIWDTASGQ 188
Query: 483 LLYSL-NGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGN 532
            L +L +    PV  + FSP G+Y+ + +LD ++ +W   +GK +KTYTG+
Sbjct: 189 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 239

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 95.1 bits (235), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 59/193 (30%), Positives = 99/193 (51%), Gaps = 11/193 (5%)
Query: 371 FATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD 430
            A+SS D +I +    + +  KT +GH+  ++ V W    +LL S SDD T KIW++   
Sbjct: 44  LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 103
Query: 431 KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGH 490
           K +  L+ HS  ++   ++P         Q  ++ S SFD +V++WDV+ GK L +L  H
Sbjct: 104 KCLKTLKGHSNYVFCCNFNP---------QSNLIVSGSFDESVRIWDVKTGKCLKTLPAH 154
Query: 491 REPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYT--GNGGIFEVCWNKEGDKIA 548
            +PV ++ F+  G  + S S D    IW    G+ +KT     N  +  V ++  G  I 
Sbjct: 155 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 214
Query: 549 ACFANHTVCVLDF 561
           A   ++T+ + D+
Sbjct: 215 AATLDNTLKLWDY 227

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 55.5 bits (132), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 483 LLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNG-GIFEVCWN 541
           L ++L GH + V S+ FSP GE+LAS S DK + IW   +GK  KT +G+  GI +V W+
Sbjct: 21  LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 80
Query: 542 KEGDKIAACFANHTVCVLD 560
            + + + +   + T+ + D
Sbjct: 81  SDSNLLVSASDDKTLKIWD 99

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score =  114 bits (285), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 65/231 (28%), Positives = 122/231 (52%), Gaps = 11/231 (4%)
Query: 304 NGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDV 363
           N  LK TL+ H   + S+K++  G++L + S DK   +W     ++++    H     DV
Sbjct: 13  NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 72
Query: 364 DWRNNVSFATSSTDN-MIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTA 422
            W ++ +   S++D+  + +  +   + +KT  GH   V C  ++P  +L+ S S D + 
Sbjct: 73  AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 132
Query: 423 KIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK 482
           +IW++K  K +  L  HS  +  + ++  GS         ++ S+S+D   ++WD   G+
Sbjct: 133 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS---------LIVSSSYDGLCRIWDTASGQ 183
Query: 483 LLYSL-NGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGN 532
            L +L +    PV  + FSP G+Y+ + +LD ++ +W   +GK +KTYTG+
Sbjct: 184 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 234

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 95.1 bits (235), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 59/193 (30%), Positives = 99/193 (51%), Gaps = 11/193 (5%)
Query: 371 FATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD 430
            A+SS D +I +    + +  KT +GH+  ++ V W    +LL S SDD T KIW++   
Sbjct: 39  LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 98
Query: 431 KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGH 490
           K +  L+ HS  ++   ++P         Q  ++ S SFD +V++WDV+ GK L +L  H
Sbjct: 99  KCLKTLKGHSNYVFCCNFNP---------QSNLIVSGSFDESVRIWDVKTGKCLKTLPAH 149
Query: 491 REPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYT--GNGGIFEVCWNKEGDKIA 548
            +PV ++ F+  G  + S S D    IW    G+ +KT     N  +  V ++  G  I 
Sbjct: 150 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 209
Query: 549 ACFANHTVCVLDF 561
           A   ++T+ + D+
Sbjct: 210 AATLDNTLKLWDY 222

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 483 LLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNG-GIFEVCWN 541
           L ++L GH + V S+ FSP GE+LAS S DK + IW   +GK  KT +G+  GI +V W+
Sbjct: 16  LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 75
Query: 542 KEGDKIAACFANHTVCVLD 560
            + + + +   + T+ + D
Sbjct: 76  SDSNLLVSASDDKTLKIWD 94

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score =  114 bits (285), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 65/231 (28%), Positives = 122/231 (52%), Gaps = 11/231 (4%)
Query: 304 NGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDV 363
           N  LK TL+ H   + S+K++  G++L + S DK   +W     ++++    H     DV
Sbjct: 17  NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 76
Query: 364 DWRNNVSFATSSTDN-MIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTA 422
            W ++ +   S++D+  + +  +   + +KT  GH   V C  ++P  +L+ S S D + 
Sbjct: 77  AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 136
Query: 423 KIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK 482
           +IW++K  K +  L  HS  +  + ++  GS         ++ S+S+D   ++WD   G+
Sbjct: 137 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS---------LIVSSSYDGLCRIWDTASGQ 187
Query: 483 LLYSL-NGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGN 532
            L +L +    PV  + FSP G+Y+ + +LD ++ +W   +GK +KTYTG+
Sbjct: 188 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 238

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 95.1 bits (235), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 59/193 (30%), Positives = 99/193 (51%), Gaps = 11/193 (5%)
Query: 371 FATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD 430
            A+SS D +I +    + +  KT +GH+  ++ V W    +LL S SDD T KIW++   
Sbjct: 43  LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 102
Query: 431 KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGH 490
           K +  L+ HS  ++   ++P         Q  ++ S SFD +V++WDV+ GK L +L  H
Sbjct: 103 KCLKTLKGHSNYVFCCNFNP---------QSNLIVSGSFDESVRIWDVKTGKCLKTLPAH 153
Query: 491 REPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYT--GNGGIFEVCWNKEGDKIA 548
            +PV ++ F+  G  + S S D    IW    G+ +KT     N  +  V ++  G  I 
Sbjct: 154 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 213
Query: 549 ACFANHTVCVLDF 561
           A   ++T+ + D+
Sbjct: 214 AATLDNTLKLWDY 226

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 55.8 bits (133), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 483 LLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNG-GIFEVCWN 541
           L ++L GH + V S+ FSP GE+LAS S DK + IW   +GK  KT +G+  GI +V W+
Sbjct: 20  LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 79
Query: 542 KEGDKIAACFANHTVCVLD 560
            + + + +   + T+ + D
Sbjct: 80  SDSNLLVSASDDKTLKIWD 98

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score =  114 bits (284), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 65/231 (28%), Positives = 122/231 (52%), Gaps = 11/231 (4%)
Query: 304 NGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDV 363
           N  LK TL+ H   + S+K++  G++L + S DK   +W     ++++    H     DV
Sbjct: 12  NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 71
Query: 364 DWRNNVSFATSSTDN-MIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTA 422
            W ++ +   S++D+  + +  +   + +KT  GH   V C  ++P  +L+ S S D + 
Sbjct: 72  AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 131
Query: 423 KIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK 482
           +IW++K  K +  L  HS  +  + ++  GS         ++ S+S+D   ++WD   G+
Sbjct: 132 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS---------LIVSSSYDGLCRIWDTASGQ 182
Query: 483 LLYSL-NGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGN 532
            L +L +    PV  + FSP G+Y+ + +LD ++ +W   +GK +KTYTG+
Sbjct: 183 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 233

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 95.1 bits (235), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 59/193 (30%), Positives = 99/193 (51%), Gaps = 11/193 (5%)
Query: 371 FATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD 430
            A+SS D +I +    + +  KT +GH+  ++ V W    +LL S SDD T KIW++   
Sbjct: 38  LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 97
Query: 431 KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGH 490
           K +  L+ HS  ++   ++P         Q  ++ S SFD +V++WDV+ GK L +L  H
Sbjct: 98  KCLKTLKGHSNYVFCCNFNP---------QSNLIVSGSFDESVRIWDVKTGKCLKTLPAH 148
Query: 491 REPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYT--GNGGIFEVCWNKEGDKIA 548
            +PV ++ F+  G  + S S D    IW    G+ +KT     N  +  V ++  G  I 
Sbjct: 149 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 208
Query: 549 ACFANHTVCVLDF 561
           A   ++T+ + D+
Sbjct: 209 AATLDNTLKLWDY 221

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 55.8 bits (133), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 483 LLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNG-GIFEVCWN 541
           L ++L GH + V S+ FSP GE+LAS S DK + IW   +GK  KT +G+  GI +V W+
Sbjct: 15  LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 74
Query: 542 KEGDKIAACFANHTVCVLD 560
            + + + +   + T+ + D
Sbjct: 75  SDSNLLVSASDDKTLKIWD 93

>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345

Iteration: 1
 Score =  114 bits (284), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 82/248 (33%), Positives = 121/248 (48%), Gaps = 57/248 (22%)
Query: 280 LDWNGEGTLLATGSYDGQARIWSTNGD---LKCTLSK-HKGPIFSLKWNKKGDYLLTGSC 335
           L WN  GTLLA+   D + RIW T GD    K  LS+ H+  +  + W+  G+YL + S 
Sbjct: 22  LAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASF 81
Query: 336 DKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFA 395
           D T  +W       K Q +F                                   + T  
Sbjct: 82  DATTCIWK------KNQDDFEC---------------------------------VTTLE 102
Query: 396 GHQGEVNCVKWDPTGSLLASCSDDVTAKIWNM-KQDKY--VHDLREHSKEIYTIRWSPTG 452
           GH+ EV  V W P+G+LLA+CS D +  +W + ++D+Y  V  L  H++++  + W P+ 
Sbjct: 103 GHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPS- 161
Query: 453 SGTNNPNQQLILASASFDSTVKLWDVELGKLL--YSLNGHREPVYSLAFSPTGEYLASGS 510
                   Q +LASAS+D TVKL+  E    +   +L GH   V+SLAF P+G+ LAS S
Sbjct: 162 --------QELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCS 213
Query: 511 LDKSMHIW 518
            D+++ IW
Sbjct: 214 DDRTVRIW 221

>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345

Iteration: 1
 Score = 77.4 bits (189), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 52/169 (30%), Positives = 86/169 (50%), Gaps = 17/169 (10%)
Query: 396 GHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKY--VHDLREHSKEIYTIRWSPTGS 453
           GHQ  V  V W P G+ LAS S D T  IW   QD +  V  L  H  E+ ++ W+P+G+
Sbjct: 59  GHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGN 118
Query: 454 GTNNPNQQLILASASFDSTVKLWDVELG---KLLYSLNGHREPVYSLAFSPTGEYLASGS 510
                    +LA+ S D +V +W+V+     + +  LN H + V  + + P+ E LAS S
Sbjct: 119 ---------LLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASAS 169
Query: 511 LDKSMHIWSLKEGKIVKTYTGNG---GIFEVCWNKEGDKIAACFANHTV 556
            D ++ ++  +E   V   T  G    ++ + ++  G ++A+C  + TV
Sbjct: 170 YDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTV 218

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score =  114 bits (284), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 65/231 (28%), Positives = 122/231 (52%), Gaps = 11/231 (4%)
Query: 304 NGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDV 363
           N  LK TL+ H   + S+K++  G++L + S DK   +W     ++++    H     DV
Sbjct: 11  NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 70
Query: 364 DWRNNVSFATSSTDN-MIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTA 422
            W ++ +   S++D+  + +  +   + +KT  GH   V C  ++P  +L+ S S D + 
Sbjct: 71  AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 130
Query: 423 KIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK 482
           +IW++K  K +  L  HS  +  + ++  GS         ++ S+S+D   ++WD   G+
Sbjct: 131 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS---------LIVSSSYDGLCRIWDTASGQ 181
Query: 483 LLYSL-NGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGN 532
            L +L +    PV  + FSP G+Y+ + +LD ++ +W   +GK +KTYTG+
Sbjct: 182 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 232

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 94.7 bits (234), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 59/193 (30%), Positives = 99/193 (51%), Gaps = 11/193 (5%)
Query: 371 FATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD 430
            A+SS D +I +    + +  KT +GH+  ++ V W    +LL S SDD T KIW++   
Sbjct: 37  LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 96
Query: 431 KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGH 490
           K +  L+ HS  ++   ++P         Q  ++ S SFD +V++WDV+ GK L +L  H
Sbjct: 97  KCLKTLKGHSNYVFCCNFNP---------QSNLIVSGSFDESVRIWDVKTGKCLKTLPAH 147
Query: 491 REPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYT--GNGGIFEVCWNKEGDKIA 548
            +PV ++ F+  G  + S S D    IW    G+ +KT     N  +  V ++  G  I 
Sbjct: 148 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 207
Query: 549 ACFANHTVCVLDF 561
           A   ++T+ + D+
Sbjct: 208 AATLDNTLKLWDY 220

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 55.5 bits (132), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 483 LLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNG-GIFEVCWN 541
           L ++L GH + V S+ FSP GE+LAS S DK + IW   +GK  KT +G+  GI +V W+
Sbjct: 14  LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 73
Query: 542 KEGDKIAACFANHTVCVLD 560
            + + + +   + T+ + D
Sbjct: 74  SDSNLLVSASDDKTLKIWD 92

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score =  114 bits (284), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 65/231 (28%), Positives = 121/231 (52%), Gaps = 11/231 (4%)
Query: 304 NGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDV 363
           N  LK TL+ H   + S+K++  G++L   S DK   +W     ++++    H     DV
Sbjct: 15  NYALKFTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDV 74
Query: 364 DWRNNVSFATSSTDN-MIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTA 422
            W ++ +   S++D+  + +  +   + +KT  GH   V C  ++P  +L+ S S D + 
Sbjct: 75  AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 134
Query: 423 KIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK 482
           +IW++K  K +  L  HS  +  + ++  GS         ++ S+S+D   ++WD   G+
Sbjct: 135 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS---------LIVSSSYDGLCRIWDTASGQ 185
Query: 483 LLYSL-NGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGN 532
            L +L +    PV  + FSP G+Y+ + +LD ++ +W   +GK +KTYTG+
Sbjct: 186 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 236

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 94.4 bits (233), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 59/193 (30%), Positives = 98/193 (50%), Gaps = 11/193 (5%)
Query: 371 FATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD 430
            A SS D +I +    + +  KT +GH+  ++ V W    +LL S SDD T KIW++   
Sbjct: 41  LAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 100
Query: 431 KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGH 490
           K +  L+ HS  ++   ++P         Q  ++ S SFD +V++WDV+ GK L +L  H
Sbjct: 101 KCLKTLKGHSNYVFCCNFNP---------QSNLIVSGSFDESVRIWDVKTGKCLKTLPAH 151
Query: 491 REPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYT--GNGGIFEVCWNKEGDKIA 548
            +PV ++ F+  G  + S S D    IW    G+ +KT     N  +  V ++  G  I 
Sbjct: 152 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 211
Query: 549 ACFANHTVCVLDF 561
           A   ++T+ + D+
Sbjct: 212 AATLDNTLKLWDY 224

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 483 LLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNG-GIFEVCWN 541
           L ++L GH + V S+ FSP GE+LA+ S DK + IW   +GK  KT +G+  GI +V W+
Sbjct: 18  LKFTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 77
Query: 542 KEGDKIAACFANHTVCVLD 560
            + + + +   + T+ + D
Sbjct: 78  SDSNLLVSASDDKTLKIWD 96

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score =  114 bits (284), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 65/231 (28%), Positives = 122/231 (52%), Gaps = 11/231 (4%)
Query: 304 NGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDV 363
           N  LK TL+ H   + S+K++  G++L + S DK   +W     ++++    H     DV
Sbjct: 12  NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 71
Query: 364 DWRNNVSFATSSTDN-MIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTA 422
            W ++ +   S++D+  + +  +   + +KT  GH   V C  ++P  +L+ S S D + 
Sbjct: 72  AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 131
Query: 423 KIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK 482
           +IW++K  K +  L  HS  +  + ++  GS         ++ S+S+D   ++WD   G+
Sbjct: 132 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS---------LIVSSSYDGLCRIWDTASGQ 182
Query: 483 LLYSL-NGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGN 532
            L +L +    PV  + FSP G+Y+ + +LD ++ +W   +GK +KTYTG+
Sbjct: 183 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 233

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 94.7 bits (234), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 59/193 (30%), Positives = 99/193 (51%), Gaps = 11/193 (5%)
Query: 371 FATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD 430
            A+SS D +I +    + +  KT +GH+  ++ V W    +LL S SDD T KIW++   
Sbjct: 38  LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 97
Query: 431 KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGH 490
           K +  L+ HS  ++   ++P         Q  ++ S SFD +V++WDV+ GK L +L  H
Sbjct: 98  KCLKTLKGHSNYVFCCNFNP---------QSNLIVSGSFDESVRIWDVKTGKCLKTLPAH 148
Query: 491 REPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYT--GNGGIFEVCWNKEGDKIA 548
            +PV ++ F+  G  + S S D    IW    G+ +KT     N  +  V ++  G  I 
Sbjct: 149 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 208
Query: 549 ACFANHTVCVLDF 561
           A   ++T+ + D+
Sbjct: 209 AATLDNTLKLWDY 221

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 55.5 bits (132), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 483 LLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNG-GIFEVCWN 541
           L ++L GH + V S+ FSP GE+LAS S DK + IW   +GK  KT +G+  GI +V W+
Sbjct: 15  LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 74
Query: 542 KEGDKIAACFANHTVCVLD 560
            + + + +   + T+ + D
Sbjct: 75  SDSNLLVSASDDKTLKIWD 93

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score =  114 bits (284), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 65/231 (28%), Positives = 122/231 (52%), Gaps = 11/231 (4%)
Query: 304 NGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDV 363
           N  LK TL+ H   + S+K++  G++L + S DK   +W     ++++    H     DV
Sbjct: 8   NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 67
Query: 364 DWRNNVSFATSSTDN-MIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTA 422
            W ++ +   S++D+  + +  +   + +KT  GH   V C  ++P  +L+ S S D + 
Sbjct: 68  AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 127
Query: 423 KIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK 482
           +IW++K  K +  L  HS  +  + ++  GS         ++ S+S+D   ++WD   G+
Sbjct: 128 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS---------LIVSSSYDGLCRIWDTASGQ 178
Query: 483 LLYSL-NGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGN 532
            L +L +    PV  + FSP G+Y+ + +LD ++ +W   +GK +KTYTG+
Sbjct: 179 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 229

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 95.1 bits (235), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 59/193 (30%), Positives = 99/193 (51%), Gaps = 11/193 (5%)
Query: 371 FATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD 430
            A+SS D +I +    + +  KT +GH+  ++ V W    +LL S SDD T KIW++   
Sbjct: 34  LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 93
Query: 431 KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGH 490
           K +  L+ HS  ++   ++P         Q  ++ S SFD +V++WDV+ GK L +L  H
Sbjct: 94  KCLKTLKGHSNYVFCCNFNP---------QSNLIVSGSFDESVRIWDVKTGKCLKTLPAH 144
Query: 491 REPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYT--GNGGIFEVCWNKEGDKIA 548
            +PV ++ F+  G  + S S D    IW    G+ +KT     N  +  V ++  G  I 
Sbjct: 145 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 204
Query: 549 ACFANHTVCVLDF 561
           A   ++T+ + D+
Sbjct: 205 AATLDNTLKLWDY 217

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 55.8 bits (133), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 483 LLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNG-GIFEVCWN 541
           L ++L GH + V S+ FSP GE+LAS S DK + IW   +GK  KT +G+  GI +V W+
Sbjct: 11  LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 70
Query: 542 KEGDKIAACFANHTVCVLD 560
            + + + +   + T+ + D
Sbjct: 71  SDSNLLVSASDDKTLKIWD 89

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score =  111 bits (277), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 75/269 (27%), Positives = 127/269 (47%), Gaps = 13/269 (4%)
Query: 277 VTTLDWNGEGTLLATGSYDGQARIWS-TNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSC 335
           VT + ++   +++ + S D   ++W    GD + TL  H   +  + ++  G  L + S 
Sbjct: 111 VTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSA 170
Query: 336 DKTAIVWDVKTEEWKQQFEFHSGPTLDVD-WRNNVSFATSSTDNMIYVCKIGENRPIKTF 394
           D T  +WD +  E  +    H      V    N     ++S D  I + ++     +KTF
Sbjct: 171 DMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTF 230
Query: 395 AGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSP---- 450
            GH+  V  V+ +  G+L+ASCS+D T ++W +   +   +LREH   +  I W+P    
Sbjct: 231 TGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSY 290
Query: 451 ------TGSGTNNPNQQ-LILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTG 503
                 TGS T    +    L S S D T+K+WDV  G  L +L GH   V  + F   G
Sbjct: 291 SSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGG 350
Query: 504 EYLASGSLDKSMHIWSLKEGKIVKTYTGN 532
           +++ S + DK++ +W  K  + +KT   +
Sbjct: 351 KFILSCADDKTLRVWDYKNKRCMKTLNAH 379

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 93.2 bits (230), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 55/173 (31%), Positives = 96/173 (55%), Gaps = 12/173 (6%)
Query: 389 RPIKTFA--GHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTI 446
           RP + +A  GH+  V  V + P  S++ S S+D T K+W+ +   +   L+ H+  +  I
Sbjct: 97  RPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDI 156
Query: 447 RWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYL 506
            +  +G          +LAS S D T+KLWD +  + + +++GH   V S++  P G+++
Sbjct: 157 SFDHSGK---------LLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHI 207
Query: 507 ASGSLDKSMHIWSLKEGKIVKTYTGNGG-IFEVCWNKEGDKIAACFANHTVCV 558
            S S DK++ +W ++ G  VKT+TG+   +  V  N++G  IA+C  + TV V
Sbjct: 208 VSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRV 260

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score =  109 bits (273), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 63/231 (27%), Positives = 120/231 (51%), Gaps = 11/231 (4%)
Query: 304 NGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDV 363
           N  L  TL+ H   + S+K++  G++L + S DK   +W     ++++    H     DV
Sbjct: 15  NYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 74
Query: 364 DWRNNVSFATSSTDN-MIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTA 422
            W ++ +   S++D+  + +  +   + +KT  GH   V C  ++P  +L+ S S D + 
Sbjct: 75  AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 134
Query: 423 KIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK 482
           +IW++K    +  L  HS  +  + ++  GS         ++ S+S+D   ++WD   G+
Sbjct: 135 RIWDVKTGMCLKTLPAHSDPVSAVHFNRDGS---------LIVSSSYDGLCRIWDTASGQ 185
Query: 483 LLYSL-NGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGN 532
            L +L +    PV  + FSP G+Y+ + +LD ++ +W   +GK +KTYTG+
Sbjct: 186 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 236

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 92.8 bits (229), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 58/193 (30%), Positives = 98/193 (50%), Gaps = 11/193 (5%)
Query: 371 FATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD 430
            A+SS D +I +    + +  KT +GH+  ++ V W    +LL S SDD T KIW++   
Sbjct: 41  LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 100
Query: 431 KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGH 490
           K +  L+ HS  ++   ++P         Q  ++ S SFD +V++WDV+ G  L +L  H
Sbjct: 101 KCLKTLKGHSNYVFCCNFNP---------QSNLIVSGSFDESVRIWDVKTGMCLKTLPAH 151
Query: 491 REPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYT--GNGGIFEVCWNKEGDKIA 548
            +PV ++ F+  G  + S S D    IW    G+ +KT     N  +  V ++  G  I 
Sbjct: 152 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 211
Query: 549 ACFANHTVCVLDF 561
           A   ++T+ + D+
Sbjct: 212 AATLDNTLKLWDY 224

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 49/79 (62%), Gaps = 1/79 (1%)
Query: 483 LLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNG-GIFEVCWN 541
           L+++L GH + V S+ FSP GE+LAS S DK + IW   +GK  KT +G+  GI +V W+
Sbjct: 18  LMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 77
Query: 542 KEGDKIAACFANHTVCVLD 560
            + + + +   + T+ + D
Sbjct: 78  SDSNLLVSASDDKTLKIWD 96

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score =  108 bits (271), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 63/231 (27%), Positives = 119/231 (51%), Gaps = 11/231 (4%)
Query: 304 NGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDV 363
           N  L  TL+ H   + S+K++  G++L + S DK   +W     ++++    H     DV
Sbjct: 15  NYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 74
Query: 364 DWRNNVSFATSSTDN-MIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTA 422
            W ++ +   S++D+  + +  +   + +KT  GH   V C  ++P  +L+ S S D + 
Sbjct: 75  AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 134
Query: 423 KIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK 482
           +IW++K    +  L  HS  +  + ++  GS         ++ S+S+D   ++WD   G+
Sbjct: 135 RIWDVKTGMCLKTLPAHSDPVSAVHFNRDGS---------LIVSSSYDGLCRIWDTASGQ 185
Query: 483 LLYSL-NGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGN 532
            L +L +    PV  + FSP G+Y+ + +LD  + +W   +GK +KTYTG+
Sbjct: 186 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGH 236

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 91.3 bits (225), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 58/158 (36%), Positives = 81/158 (51%), Gaps = 10/158 (6%)
Query: 393 TFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTG 452
           T AGH   V+ VK+ P G  LAS S D   KIW     K+   +  H   I  + WS   
Sbjct: 21  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS--- 77
Query: 453 SGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLD 512
           S +N      +L SAS D T+K+WDV  GK L +L GH   V+   F+P    + SGS D
Sbjct: 78  SDSN------LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 131
Query: 513 KSMHIWSLKEGKIVKTYTGNGG-IFEVCWNKEGDKIAA 549
           +S+ IW +K G  +KT   +   +  V +N++G  I +
Sbjct: 132 ESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVS 169

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 49/79 (62%), Gaps = 1/79 (1%)
Query: 483 LLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNG-GIFEVCWN 541
           L+++L GH + V S+ FSP GE+LAS S DK + IW   +GK  KT +G+  GI +V W+
Sbjct: 18  LMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 77
Query: 542 KEGDKIAACFANHTVCVLD 560
            + + + +   + T+ + D
Sbjct: 78  SDSNLLVSASDDKTLKIWD 96

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score =  100 bits (249), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 76/262 (29%), Positives = 122/262 (46%), Gaps = 25/262 (9%)
Query: 263 LKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSL 321
           L+ +  R+ E SK V  L ++ +   + +G  D   +IW  N  + K  L+ H G +  L
Sbjct: 123 LQRIHCRS-ETSKGVYCLQYDDQK--IVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCL 179
Query: 322 KWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIY 381
           +++++   ++TGS D T  VWDV T E       H    L + + NN    T S D  I 
Sbjct: 180 QYDER--VIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRF-NNGMMVTCSKDRSIA 236
Query: 382 VCKIGENRPI---KTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLRE 438
           V  +     I   +   GH+  VN V +D     + S S D T K+WN    ++V  L  
Sbjct: 237 VWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWNTSTCEFVRTLNG 294
Query: 439 HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLA 498
           H + I  +++           +  ++ S S D+T++LWD+E G  L  L GH E V  + 
Sbjct: 295 HKRGIACLQY-----------RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIR 343
Query: 499 FSPTGEYLASGSLDKSMHIWSL 520
           F    + + SG+ D  + +W L
Sbjct: 344 FD--NKRIVSGAYDGKIKVWDL 363

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/144 (23%), Positives = 70/144 (48%), Gaps = 18/144 (12%)
Query: 392 KTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPT 451
           +   GH G V C+++D    ++ + S D T ++W++   + ++ L  H + +  +R+   
Sbjct: 167 RILTGHTGSVLCLQYDE--RVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRF--- 221
Query: 452 GSGTNNPNQQLILASASFDSTVKLWDVELGK---LLYSLNGHREPVYSLAFSPTGEYLAS 508
               NN     ++ + S D ++ +WD+       L   L GHR  V  + F    +Y+ S
Sbjct: 222 ----NNG----MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVS 271
Query: 509 GSLDKSMHIWSLKEGKIVKTYTGN 532
            S D+++ +W+    + V+T  G+
Sbjct: 272 ASGDRTIKVWNTSTCEFVRTLNGH 295

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score = 94.0 bits (232), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 62/247 (25%), Positives = 119/247 (48%), Gaps = 19/247 (7%)
Query: 286 GTLLATGSYDGQARIWS-TNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDV 344
           G  + +GS D   ++WS   G    TL  H G ++S +   + + +++GS D+T  VW+ 
Sbjct: 129 GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQ--MRDNIIISGSTDRTLKVWNA 186
Query: 345 KTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCV 404
           +T E       H+  T+     +     + S D  + V  I   + +    GH   V CV
Sbjct: 187 ETGECIHTLYGHT-STVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCV 245
Query: 405 KWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLIL 464
           ++D  G  + S + D   K+W+ + +  +H L+ H+  +Y++++             + +
Sbjct: 246 QYD--GRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDG-----------IHV 292
Query: 465 ASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGK 524
            S S D+++++WDVE G  +++L GH+     +        L SG+ D ++ IW +K G+
Sbjct: 293 VSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD--NILVSGNADSTVKIWDIKTGQ 350
Query: 525 IVKTYTG 531
            ++T  G
Sbjct: 351 CLQTLQG 357

>pdb|2XTC|A Chain A, Structure Of The Tbl1 Tetramerisation Domain Length = 90

Iteration: 1
 Score = 90.5 bits (223), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 41/73 (56%), Positives = 55/73 (75%)
Query: 3  SITSEELNYLVFRYLQESGLLHSAFVLGYEAGINKCNIDGNLVPPRALITFVQKGLQYLE 62
          SITS+E+N+LV+RYLQESG  HSAF  G E+ I++ NI+G LVPP ALI+ +QKGLQY+E
Sbjct: 2  SITSDEVNFLVYRYLQESGFSHSAFTFGIESHISQSNINGTLVPPAALISILQKGLQYVE 61
Query: 63 MEANLSNSDVDMD 75
           E +++      D
Sbjct: 62 AEISINEDGTVFD 74

>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464

Iteration: 1
 Score = 89.7 bits (221), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 77/261 (29%), Positives = 122/261 (46%), Gaps = 41/261 (15%)
Query: 285 EGTLLATGSYDGQARIW-STNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWD 343
           E   + TG+ D   R++ S N      LS H G +++LK+   G  L++GS D+T  VWD
Sbjct: 131 EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKY-AHGGILVSGSTDRTVRVWD 189
Query: 344 VKTEEWKQQFEFHSGPT--LD-VDWRNNVSFATSSTDNMIYVCKIG-------------- 386
           +K       FE H+     LD V+++N     T S DN ++V K+               
Sbjct: 190 IKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDY 249
Query: 387 -------ENRP--IKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLR 437
                  E  P  +    GH   V  V     G+++ S S D T  +W++ Q K ++ L 
Sbjct: 250 PLVFHTPEENPYFVGVLRGHMASVRTVS--GHGNIVVSGSYDNTLIVWDVAQMKCLYILS 307
Query: 438 EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSL 497
            H+  IY+         T   +++    SAS D+T+++WD+E G+L+Y+L GH   V  L
Sbjct: 308 GHTDRIYS---------TIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLL 358
Query: 498 AFSPTGEYLASGSLDKSMHIW 518
             S   ++L S + D S+  W
Sbjct: 359 RLSD--KFLVSAAADGSIRGW 377

>pdb|2XTD|A Chain A, Structure Of The Tbl1 Tetramerisation Domain Length = 71

Iteration: 1
 Score = 89.7 bits (221), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 40/66 (60%), Positives = 54/66 (81%)
Query: 3  SITSEELNYLVFRYLQESGLLHSAFVLGYEAGINKCNIDGNLVPPRALITFVQKGLQYLE 62
          SITS+E+N+LV+RYLQESG  HSAF  G E+ I++ NI+G LVPP ALI+ +QKGLQY+E
Sbjct: 2  SITSDEVNFLVYRYLQESGFSHSAFTFGIESHISQSNINGTLVPPAALISILQKGLQYVE 61
Query: 63 MEANLS 68
           E +++
Sbjct: 62 AEISIN 67

>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464

Iteration: 1
 Score = 87.8 bits (216), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 77/261 (29%), Positives = 121/261 (46%), Gaps = 41/261 (15%)
Query: 285 EGTLLATGSYDGQARIW-STNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWD 343
           E   + TG+ D   R++ S N      LS H G +++LK+   G  L++GS D+T  VWD
Sbjct: 131 EDNYVITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKY-AHGGILVSGSTDRTVRVWD 189
Query: 344 VKTEEWKQQFEFHSGPT--LD-VDWRNNVSFATSSTDNMIYVCKIG-------------- 386
           +K       FE H+     LD V+++N     T S DN ++V K+               
Sbjct: 190 IKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDY 249
Query: 387 -------ENRP--IKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLR 437
                  E  P  +    GH   V  V     G+++ S S D T  +W++ Q K ++ L 
Sbjct: 250 PLVFHTPEENPYFVGVLRGHXASVRTVS--GHGNIVVSGSYDNTLIVWDVAQXKCLYILS 307
Query: 438 EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSL 497
            H+  IY+         T   +++    SAS D+T+++WD+E G+L Y+L GH   V  L
Sbjct: 308 GHTDRIYS---------TIYDHERKRCISASXDTTIRIWDLENGELXYTLQGHTALVGLL 358
Query: 498 AFSPTGEYLASGSLDKSMHIW 518
             S   ++L S + D S+  W
Sbjct: 359 RLSD--KFLVSAAADGSIRGW 377

>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354

Iteration: 1
 Score = 87.4 bits (215), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 62/245 (25%), Positives = 110/245 (44%), Gaps = 19/245 (7%)
Query: 286 GTLLATGSYDGQARIWSTNGDL-------KCTLSKHKGPIFSLKWNKKGDYLLTGSCDKT 338
           G  +A G  D +  ++    D        K +++ H   + +  +      +LT S D T
Sbjct: 118 GCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGT 177
Query: 339 AIVWDVKTEEWKQQFEFHSGPTLDVDW---RNNVSFATSSTDNMIYVCKIGENRPIKTFA 395
             +WDV++ +  Q F  H    L +D        +F +   D    V  +   + ++ F 
Sbjct: 178 CALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFE 237
Query: 396 GHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGT 455
            H+ +VN V++ P+G   AS SDD T ++++++ D+ V         IY+      G+ +
Sbjct: 238 THESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREV--------AIYSKESIIFGASS 289
Query: 456 NNPNQQLILASASF-DSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKS 514
            + +    L  A + D T+ +WDV  G  +  L GH   V +L  SP G    SGS D +
Sbjct: 290 VDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHT 349
Query: 515 MHIWS 519
           + +W+
Sbjct: 350 LRVWA 354

>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 56/267 (20%), Positives = 109/267 (40%), Gaps = 29/267 (10%)
Query: 310 TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNV 369
           TL  H   +  + W K    +++ S D   IVWD  T   +         T+   W    
Sbjct: 59  TLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAV------TMPCTWVMAC 112
Query: 370 SFATSST-------DNM--IYVCKIGENRPI----KTFAGHQGEVNCVKWDPTGSLLASC 416
           ++A S         DN   +Y     +N  +    K+ A H   ++   +  +   + + 
Sbjct: 113 AYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTA 172
Query: 417 SDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLW 476
           S D T  +W+++  + +     H  ++  +  +P+ +G           S   D    +W
Sbjct: 173 SGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNT-------FVSGGCDKKAMVW 225
Query: 477 DVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIF 536
           D+  G+ + +   H   V S+ + P+G+  ASGS D +  ++ L+  + V  Y+    IF
Sbjct: 226 DMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIF 285
Query: 537 ---EVCWNKEGDKIAACFANHTVCVLD 560
               V ++  G  + A + ++T+ V D
Sbjct: 286 GASSVDFSLSGRLLFAGYNDYTINVWD 312

>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/213 (23%), Positives = 79/213 (37%), Gaps = 42/213 (19%)
Query: 392 KTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPT 451
           +T  GH  +V C+ W      + S S D    +W+       H +      +    ++P+
Sbjct: 58  RTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPS 117
Query: 452 G---------------------------------------SGTNNPNQQLILASASFDST 472
           G                                       S  +  N  + + +AS D T
Sbjct: 118 GCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGT 177
Query: 473 VKLWDVELGKLLYSLNGHREPVYSLAFSP--TGEYLASGSLDKSMHIWSLKEGKIVKTY- 529
             LWDVE G+LL S +GH   V  L  +P  TG    SG  DK   +W ++ G+ V+ + 
Sbjct: 178 CALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFE 237
Query: 530 TGNGGIFEVCWNKEGDKIAACFANHTVCVLDFR 562
           T    +  V +   GD  A+   + T  + D R
Sbjct: 238 THESDVNSVRYYPSGDAFASGSDDATCRLYDLR 270

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 85.5 bits (210), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 70/255 (27%), Positives = 119/255 (46%), Gaps = 39/255 (15%)
Query: 314 HKGPIFSLKWNKKGDYLLTGSCDKTAIVW-------------DVKTEEWKQQFEFHSGPT 360
           H   +  +K++  G+YL TG C+KT  V+             D    +  +     S P+
Sbjct: 63  HTSVVCCVKFSNDGEYLATG-CNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPS 121
Query: 361 LDVDWRNNVSF-------ATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLL 413
            D+  R+ V F       AT + D +I +  I   + +    GH+ ++  + + P+G  L
Sbjct: 122 SDLYIRS-VCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKL 180
Query: 414 ASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTV 473
            S S D T +IW+++  +    L      + T+  SP G G         +A+ S D  V
Sbjct: 181 VSGSGDRTVRIWDLRTGQCSLTLSIEDG-VTTVAVSP-GDGK-------YIAAGSLDRAV 231
Query: 474 KLWDVELGKLLYSLN-------GHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEG-KI 525
           ++WD E G L+  L+       GH++ VYS+ F+  G+ + SGSLD+S+ +W+L+     
Sbjct: 232 RVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNK 291
Query: 526 VKTYTGNGGIFEVCW 540
             + T N G  EV +
Sbjct: 292 SDSKTPNSGTCEVTY 306

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 69.3 bits (168), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 48/154 (31%), Positives = 80/154 (51%), Gaps = 16/154 (10%)
Query: 410 GSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIY--TIRWSPTGSGTNNPNQQLILASA 467
           GSL+A  SDD  A     K  + ++     S ++Y  ++ +SP G           LA+ 
Sbjct: 95  GSLVARLSDDSAAN----KDPENLNTSSSPSSDLYIRSVCFSPDGK---------FLATG 141
Query: 468 SFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVK 527
           + D  +++WD+E  K++  L GH + +YSL + P+G+ L SGS D+++ IW L+ G+   
Sbjct: 142 AEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSL 201
Query: 528 TYTGNGGIFEVCWNK-EGDKIAACFANHTVCVLD 560
           T +   G+  V  +  +G  IAA   +  V V D
Sbjct: 202 TLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWD 235

>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340

Iteration: 1
 Score = 84.7 bits (208), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 61/254 (24%), Positives = 111/254 (43%), Gaps = 30/254 (11%)
Query: 310 TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNV 369
           TL  H   I+++ W      LL+ S D   I+WD  T       + H+ P L   W    
Sbjct: 50  TLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTN-----KVHAIP-LRSSWVMTC 103
Query: 370 SFATS----STDNMIYVCKI-------GENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD 418
           ++A S    +   +  +C I       G  R  +  AGH G ++C ++     ++ S S 
Sbjct: 104 AYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTS-SG 162
Query: 419 DVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDV 478
           D T  +W+++  +       H+ ++ ++  +P            +  S + D++ KLWDV
Sbjct: 163 DTTCALWDIETGQQTTTFTGHTGDVMSLSLAP---------DTRLFVSGACDASAKLWDV 213
Query: 479 ELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNG---GI 535
             G    +  GH   + ++ F P G   A+GS D +  ++ L+  + + TY+ +    GI
Sbjct: 214 REGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGI 273
Query: 536 FEVCWNKEGDKIAA 549
             V ++K G  + A
Sbjct: 274 TSVSFSKSGRLLLA 287

>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340

Iteration: 1
 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 60/238 (25%), Positives = 100/238 (42%), Gaps = 40/238 (16%)
Query: 364 DWRNNVSFATSS--TDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVT 421
           D R   + AT S  T+N+  V +I + R  +T  GH  ++  + W     LL S S D  
Sbjct: 20  DARKACADATLSQITNNIDPVGRI-QMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGK 78
Query: 422 AKIWNMKQDKYVHDLREHSKEIYTIRWSPTGS--------------------GTNNPNQQ 461
             IW+      VH +   S  + T  ++P+G+                    G    +++
Sbjct: 79  LIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRE 138
Query: 462 LI----------------LASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEY 505
           L                 + ++S D+T  LWD+E G+   +  GH   V SL+ +P    
Sbjct: 139 LAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRL 198
Query: 506 LASGSLDKSMHIWSLKEGKIVKTYTGN-GGIFEVCWNKEGDKIAACFANHTVCVLDFR 562
             SG+ D S  +W ++EG   +T+TG+   I  +C+   G+  A    + T  + D R
Sbjct: 199 FVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLR 256

>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340

Iteration: 1
 Score = 84.3 bits (207), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 61/254 (24%), Positives = 111/254 (43%), Gaps = 30/254 (11%)
Query: 310 TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNV 369
           TL  H   I+++ W      LL+ S D   I+WD  T       + H+ P L   W    
Sbjct: 50  TLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTN-----KVHAIP-LRSSWVMTC 103
Query: 370 SFATS----STDNMIYVCKI-------GENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD 418
           ++A S    +   +  +C I       G  R  +  AGH G ++C ++     ++ S S 
Sbjct: 104 AYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTS-SG 162
Query: 419 DVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDV 478
           D T  +W+++  +       H+ ++ ++  +P            +  S + D++ KLWDV
Sbjct: 163 DTTCALWDIETGQQTTTFTGHTGDVMSLSLAP---------DTRLFVSGACDASAKLWDV 213
Query: 479 ELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNG---GI 535
             G    +  GH   + ++ F P G   A+GS D +  ++ L+  + + TY+ +    GI
Sbjct: 214 REGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGI 273
Query: 536 FEVCWNKEGDKIAA 549
             V ++K G  + A
Sbjct: 274 TSVSFSKSGRLLLA 287

>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340

Iteration: 1
 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 60/238 (25%), Positives = 100/238 (42%), Gaps = 40/238 (16%)
Query: 364 DWRNNVSFATSS--TDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVT 421
           D R   + AT S  T+N+  V +I + R  +T  GH  ++  + W     LL S S D  
Sbjct: 20  DARKACADATLSQITNNIDPVGRI-QMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGK 78
Query: 422 AKIWNMKQDKYVHDLREHSKEIYTIRWSPTGS--------------------GTNNPNQQ 461
             IW+      VH +   S  + T  ++P+G+                    G    +++
Sbjct: 79  LIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRE 138
Query: 462 LI----------------LASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEY 505
           L                 + ++S D+T  LWD+E G+   +  GH   V SL+ +P    
Sbjct: 139 LAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRL 198
Query: 506 LASGSLDKSMHIWSLKEGKIVKTYTGN-GGIFEVCWNKEGDKIAACFANHTVCVLDFR 562
             SG+ D S  +W ++EG   +T+TG+   I  +C+   G+  A    + T  + D R
Sbjct: 199 FVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLR 256

>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340

Iteration: 1
 Score = 83.2 bits (204), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 60/254 (23%), Positives = 111/254 (43%), Gaps = 30/254 (11%)
Query: 310 TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNV 369
           TL  H   I+++ W      L++ S D   I+WD  T       + H+ P L   W    
Sbjct: 50  TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTN-----KVHAIP-LRSSWVMTC 103
Query: 370 SFATS----STDNMIYVCKI-------GENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD 418
           ++A S    +   +  +C I       G  R  +  AGH G ++C ++     ++ S S 
Sbjct: 104 AYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTS-SG 162
Query: 419 DVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDV 478
           D T  +W+++  +       H+ ++ ++  +P            +  S + D++ KLWDV
Sbjct: 163 DTTCALWDIETGQQTTTFTGHTGDVMSLSLAP---------DTRLFVSGACDASAKLWDV 213
Query: 479 ELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNG---GI 535
             G    +  GH   + ++ F P G   A+GS D +  ++ L+  + + TY+ +    GI
Sbjct: 214 REGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGI 273
Query: 536 FEVCWNKEGDKIAA 549
             V ++K G  + A
Sbjct: 274 TSVSFSKSGRLLLA 287

>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340

Iteration: 1
 Score = 65.5 bits (158), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 60/238 (25%), Positives = 100/238 (42%), Gaps = 40/238 (16%)
Query: 364 DWRNNVSFATSS--TDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVT 421
           D R   + AT S  T+N+  V +I + R  +T  GH  ++  + W     LL S S D  
Sbjct: 20  DARKACADATLSQITNNIDPVGRI-QMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGK 78
Query: 422 AKIWNMKQDKYVHDLREHSKEIYTIRWSPTGS--------------------GTNNPNQQ 461
             IW+      VH +   S  + T  ++P+G+                    G    +++
Sbjct: 79  LIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRE 138
Query: 462 LI----------------LASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEY 505
           L                 + ++S D+T  LWD+E G+   +  GH   V SL+ +P    
Sbjct: 139 LAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRL 198
Query: 506 LASGSLDKSMHIWSLKEGKIVKTYTGN-GGIFEVCWNKEGDKIAACFANHTVCVLDFR 562
             SG+ D S  +W ++EG   +T+TG+   I  +C+   G+  A    + T  + D R
Sbjct: 199 FVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLR 256

>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351

Iteration: 1
 Score = 83.2 bits (204), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 60/254 (23%), Positives = 111/254 (43%), Gaps = 30/254 (11%)
Query: 310 TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNV 369
           TL  H   I+++ W      L++ S D   I+WD  T       + H+ P L   W    
Sbjct: 61  TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTN-----KVHAIP-LRSSWVMTC 114
Query: 370 SFATS----STDNMIYVCKI-------GENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD 418
           ++A S    +   +  +C I       G  R  +  AGH G ++C ++     ++ S S 
Sbjct: 115 AYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTS-SG 173
Query: 419 DVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDV 478
           D T  +W+++  +       H+ ++ ++  +P            +  S + D++ KLWDV
Sbjct: 174 DTTCALWDIETGQQTTTFTGHTGDVMSLSLAP---------DTRLFVSGACDASAKLWDV 224
Query: 479 ELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNG---GI 535
             G    +  GH   + ++ F P G   A+GS D +  ++ L+  + + TY+ +    GI
Sbjct: 225 REGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGI 284
Query: 536 FEVCWNKEGDKIAA 549
             V ++K G  + A
Sbjct: 285 TSVSFSKSGRLLLA 298

>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351

Iteration: 1
 Score = 65.9 bits (159), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 60/238 (25%), Positives = 100/238 (42%), Gaps = 40/238 (16%)
Query: 364 DWRNNVSFATSS--TDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVT 421
           D R   + AT S  T+N+  V +I + R  +T  GH  ++  + W     LL S S D  
Sbjct: 31  DARKACADATLSQITNNIDPVGRI-QMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGK 89
Query: 422 AKIWNMKQDKYVHDLREHSKEIYTIRWSPTGS--------------------GTNNPNQQ 461
             IW+      VH +   S  + T  ++P+G+                    G    +++
Sbjct: 90  LIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRE 149
Query: 462 LI----------------LASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEY 505
           L                 + ++S D+T  LWD+E G+   +  GH   V SL+ +P    
Sbjct: 150 LAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRL 209
Query: 506 LASGSLDKSMHIWSLKEGKIVKTYTGN-GGIFEVCWNKEGDKIAACFANHTVCVLDFR 562
             SG+ D S  +W ++EG   +T+TG+   I  +C+   G+  A    + T  + D R
Sbjct: 210 FVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLR 267

>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340

Iteration: 1
 Score = 83.2 bits (204), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 60/254 (23%), Positives = 111/254 (43%), Gaps = 30/254 (11%)
Query: 310 TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNV 369
           TL  H   I+++ W      L++ S D   I+WD  T       + H+ P L   W    
Sbjct: 50  TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTN-----KVHAIP-LRSSWVMTC 103
Query: 370 SFATS----STDNMIYVCKI-------GENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD 418
           ++A S    +   +  +C I       G  R  +  AGH G ++C ++     ++ S S 
Sbjct: 104 AYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTS-SG 162
Query: 419 DVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDV 478
           D T  +W+++  +       H+ ++ ++  +P            +  S + D++ KLWDV
Sbjct: 163 DTTCALWDIETGQQTTTFTGHTGDVMSLSLAP---------DTRLFVSGACDASAKLWDV 213
Query: 479 ELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNG---GI 535
             G    +  GH   + ++ F P G   A+GS D +  ++ L+  + + TY+ +    GI
Sbjct: 214 REGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGI 273
Query: 536 FEVCWNKEGDKIAA 549
             V ++K G  + A
Sbjct: 274 TSVSFSKSGRLLLA 287

>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340

Iteration: 1
 Score = 65.5 bits (158), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 60/238 (25%), Positives = 100/238 (42%), Gaps = 40/238 (16%)
Query: 364 DWRNNVSFATSS--TDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVT 421
           D R   + AT S  T+N+  V +I + R  +T  GH  ++  + W     LL S S D  
Sbjct: 20  DARKACADATLSQITNNIDPVGRI-QMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGK 78
Query: 422 AKIWNMKQDKYVHDLREHSKEIYTIRWSPTGS--------------------GTNNPNQQ 461
             IW+      VH +   S  + T  ++P+G+                    G    +++
Sbjct: 79  LIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRE 138
Query: 462 LI----------------LASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEY 505
           L                 + ++S D+T  LWD+E G+   +  GH   V SL+ +P    
Sbjct: 139 LAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRL 198
Query: 506 LASGSLDKSMHIWSLKEGKIVKTYTGN-GGIFEVCWNKEGDKIAACFANHTVCVLDFR 562
             SG+ D S  +W ++EG   +T+TG+   I  +C+   G+  A    + T  + D R
Sbjct: 199 FVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLR 256

>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380

Iteration: 1
 Score = 73.2 bits (178), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 54/241 (22%), Positives = 111/241 (46%), Gaps = 25/241 (10%)
Query: 306 DLKC--TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDV 363
           DL C  TL  H G ++SL W  + +++++ S D   IVW+  T +     + H    ++ 
Sbjct: 55  DLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMEC 114
Query: 364 DWR-NNVSFATSSTDNMIYVCKIGE------NRPI-KTFAGHQGEVNCVKWDP-TGSLLA 414
            +  N  S A    D+   +  +        N P+ +   GH+G  +  ++ P   + L 
Sbjct: 115 AFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLI 174
Query: 415 SCSDDVTAKIWNMKQDKYVHDLRE-----HSKEIYTIRWSPTGSGTNNPNQQLILASASF 469
           + S D T  +W++   + +          H+ ++ ++         N+ N  + + S S 
Sbjct: 175 TGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSL-------SINSLNANMFI-SGSC 226
Query: 470 DSTVKLWDVEL-GKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKT 528
           D+TV+LWD+ +  + + + +GH   + S+ F P G+   +GS D +  ++ ++ G  ++ 
Sbjct: 227 DTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQV 286
Query: 529 Y 529
           Y
Sbjct: 287 Y 287

>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343

Iteration: 1
 Score = 82.4 bits (202), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 61/213 (28%), Positives = 97/213 (45%), Gaps = 12/213 (5%)
Query: 319 FSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEF-------HSGPTLDVDWRNNVSF 371
           FS K N+    L++GS DKT ++W +  EE    F         H+    D+       F
Sbjct: 31  FSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCF 90
Query: 372 ATSST-DNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWN-MKQ 429
           A SS+ D  + +  +      K F GHQ EV  V + P    + S   +   K+WN + +
Sbjct: 91  AISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGE 150
Query: 430 DKYVHDLRE-HSKEIYTIRWSPTGSGTNNPNQ-QLILASASFDSTVKLWDVELGKLLYSL 487
            K+    +E HS  +  +R+SP     N         AS  +D  +K+W+    ++ Y+ 
Sbjct: 151 CKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF-QIRYTF 209
Query: 488 NGHREPVYSLAFSPTGEYLASGSLDKSMHIWSL 520
             H   V  L+ SP G+Y+A+G  DK + IW +
Sbjct: 210 KAHESNVNHLSISPNGKYIATGGKDKKLLIWDI 242

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 80.1 bits (196), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 71/243 (29%), Positives = 111/243 (45%), Gaps = 15/243 (6%)
Query: 307 LKCTLSKHKGPIFSLKWNKK-GDYLLTGSCDKTAIVWDVKTEEW-----KQQFEFHSGPT 360
           L+ TL  H G +  +    +  D +L+ S DKT I+W +  +E      ++    HS   
Sbjct: 30  LRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFV 89
Query: 361 LDVDWRNNVSFATS-STDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDD 419
            DV   ++  FA S S D  + +  +      + F GH  +V  V +      + S S D
Sbjct: 90  SDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRD 149
Query: 420 VTAKIWN-MKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDV 478
            T K+WN +   KY      HS+ +  +R+SP  S   NP    I+ S  +D  VK+W++
Sbjct: 150 KTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSS---NP----IIVSCGWDKLVKVWNL 202
Query: 479 ELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEV 538
              KL  +  GH   + ++  SP G   ASG  D    +W L EGK + T  G   I  +
Sbjct: 203 ANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINAL 262
Query: 539 CWN 541
           C++
Sbjct: 263 CFS 265

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 79.7 bits (195), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 71/243 (29%), Positives = 111/243 (45%), Gaps = 15/243 (6%)
Query: 307 LKCTLSKHKGPIFSLKWNKK-GDYLLTGSCDKTAIVWDVKTEEW-----KQQFEFHSGPT 360
           L+ TL  H G +  +    +  D +L+ S DKT I+W +  +E      ++    HS   
Sbjct: 7   LRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFV 66
Query: 361 LDVDWRNNVSFATS-STDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDD 419
            DV   ++  FA S S D  + +  +      + F GH  +V  V +      + S S D
Sbjct: 67  SDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRD 126
Query: 420 VTAKIWN-MKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDV 478
            T K+WN +   KY      HS+ +  +R+SP  S   NP    I+ S  +D  VK+W++
Sbjct: 127 KTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSS---NP----IIVSCGWDKLVKVWNL 179
Query: 479 ELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEV 538
              KL  +  GH   + ++  SP G   ASG  D    +W L EGK + T  G   I  +
Sbjct: 180 ANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINAL 239
Query: 539 CWN 541
           C++
Sbjct: 240 CFS 242

>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321

Iteration: 1
 Score = 79.3 bits (194), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 62/227 (27%), Positives = 105/227 (46%), Gaps = 16/227 (7%)
Query: 314 HKGPIFSLKW--NKK--GDYLLTGSCDKTAIVWDVKTEEWKQQF--EFHSGPTLDVDWRN 367
           H   I+S+ W  NKK   + ++TGS D    VW  + E    Q+  E H    + VD  +
Sbjct: 31  HDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISH 90
Query: 368 NVSFATSST-DNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWN 426
            +  A SS+ D  I +  +   + IK+      +   + + P    LA+ +      I+ 
Sbjct: 91  TLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFG 150
Query: 427 MKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYS 486
           ++  K  + L    K I +I +SP G           LAS + D  + ++D+  GKLL++
Sbjct: 151 VESGKKEYSLDTRGKFILSIAYSPDGK---------YLASGAIDGIINIFDIATGKLLHT 201
Query: 487 LNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNG 533
           L GH  P+ SL FSP  + L + S D  + I+ ++   +  T +G+ 
Sbjct: 202 LEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHA 248

>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694

Iteration: 1
 Score = 79.3 bits (194), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 63/224 (28%), Positives = 105/224 (46%), Gaps = 16/224 (7%)
Query: 327 GDYLLTGSCDKTAIVWDVKTEE-----WKQQFEFHSGPTLDVDWRNNVSFATSST-DNMI 380
            D +++ S DK+ I+W +  ++      +++   HS    DV   ++  FA S + D  +
Sbjct: 395 ADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGEL 454
Query: 381 YVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWN-MKQDKYV--HDLR 437
            +  +      + F GH  +V  V +      + S S D T K+WN + + KY       
Sbjct: 455 RLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGE 514
Query: 438 EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSL 497
            H   +  +R+SP          Q  + SAS+D TVK+W++   KL  +L GH   V ++
Sbjct: 515 GHRDWVSCVRFSPN-------TLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTV 567
Query: 498 AFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWN 541
           A SP G   ASG  D  + +W L EGK + +   N  I  +C++
Sbjct: 568 AVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHALCFS 611

>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318

Iteration: 1
 Score = 79.3 bits (194), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 65/246 (26%), Positives = 116/246 (47%), Gaps = 23/246 (9%)
Query: 311 LSKHKGPIFSLKWNKKGDY---LLTGSCDKTAIVW----DVKTEEWK-----QQFEFHSG 358
           L+ H+G + SL   +  +    +++ S DKT + W    D  + E       ++ E HS 
Sbjct: 9   LTGHRGWVTSLACPQTPETATKVVSTSRDKTLLSWGPNPDRHSSECSYGLPDRRLEGHSA 68
Query: 359 PTLDVDWRNNVSFATSST-DNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCS 417
              DV   NN +FA S++ D+ + +  +   +    F GH  +V  V + P    + S  
Sbjct: 69  FVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGG 128
Query: 418 DDVTAKIWNMKQDKYVHDLRE--HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKL 475
            D   ++WN+K +  +H L    H+  +  +R+SP+    + P    ++ S  +D+ VK+
Sbjct: 129 RDNALRVWNVKGE-CMHTLSRGAHTDWVSCVRFSPS---LDAP----VIVSGGWDNLVKV 180
Query: 476 WDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGI 535
           WD+  G+L+  L GH   V S+  SP G   AS   D    +W L +G+ +        I
Sbjct: 181 WDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEMAAGAPI 240
Query: 536 FEVCWN 541
            ++C++
Sbjct: 241 NQICFS 246

>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319

Iteration: 1
 Score = 77.0 bits (188), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 64/253 (25%), Positives = 116/253 (45%), Gaps = 11/253 (4%)
Query: 307 LKCTLSKHKGPIFSLKWNK-KGDYLLTGSCDKTAIVWDVKTEEWK-----QQFEFHSGPT 360
           L+ TL  H G + SL  +  + + LL+ S DKT I W +  ++ K     + F+ HS   
Sbjct: 9   LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV 68
Query: 361 LDVDWRNNVSFATSST-DNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDD 419
            D     + ++A S++ D  + +  +      + F GH+ +V  V  D   S++ S S D
Sbjct: 69  QDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRD 128
Query: 420 VTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVE 479
            T K+W +K  + +  L  H+  +  +R  P     ++    + + SA  D  VK W++ 
Sbjct: 129 KTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDD---SVTIISAGNDKMVKAWNLN 184
Query: 480 LGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVC 539
             ++     GH   + +L  SP G  +AS   D  + +W+L   K + T +    +F + 
Sbjct: 185 QFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLA 244
Query: 540 WNKEGDKIAACFA 552
           ++     +AA  A
Sbjct: 245 FSPNRYWLAAATA 257

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 77.0 bits (188), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 54/200 (27%), Positives = 85/200 (42%), Gaps = 21/200 (10%)
Query: 371 FATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD 430
            A+   D  + V K      +     H+ EV C  +    S +A+CS D   KIW+    
Sbjct: 637 IASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATG 696
Query: 431 KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGH 490
           K VH   EHS+++    ++       N +  L+LA+ S D  +KLWD+   +   ++ GH
Sbjct: 697 KLVHTYDEHSEQVNCCHFT-------NKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGH 749
Query: 491 REPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGG-------------IFE 537
              V    FSP  E LAS S D ++ +W ++     K+                   I +
Sbjct: 750 TNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVK 809
Query: 538 VC-WNKEGDKIAACFANHTV 556
            C W+ +GDKI     N  +
Sbjct: 810 CCSWSADGDKIIVAAKNKVL 829

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 77.0 bits (188), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 54/200 (27%), Positives = 85/200 (42%), Gaps = 21/200 (10%)
Query: 371 FATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD 430
            A+   D  + V K      +     H+ EV C  +    S +A+CS D   KIW+    
Sbjct: 630 IASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATG 689
Query: 431 KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGH 490
           K VH   EHS+++    ++       N +  L+LA+ S D  +KLWD+   +   ++ GH
Sbjct: 690 KLVHTYDEHSEQVNCCHFT-------NKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGH 742
Query: 491 REPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGG-------------IFE 537
              V    FSP  E LAS S D ++ +W ++     K+                   I +
Sbjct: 743 TNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVK 802
Query: 538 VC-WNKEGDKIAACFANHTV 556
            C W+ +GDKI     N  +
Sbjct: 803 CCSWSADGDKIIVAAKNKVL 822

>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319

Iteration: 1
 Score = 77.0 bits (188), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 64/253 (25%), Positives = 116/253 (45%), Gaps = 11/253 (4%)
Query: 307 LKCTLSKHKGPIFSLKWNK-KGDYLLTGSCDKTAIVWDVKTEEWK-----QQFEFHSGPT 360
           L+ TL  H G + SL  +  + + LL+ S DKT I W +  ++ K     + F+ HS   
Sbjct: 9   LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV 68
Query: 361 LDVDWRNNVSFATSST-DNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDD 419
            D     + ++A S++ D  + +  +      + F GH+ +V  V  D   S++ S S D
Sbjct: 69  QDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRD 128
Query: 420 VTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVE 479
            T K+W +K  + +  L  H+  +  +R  P     ++    + + SA  D  VK W++ 
Sbjct: 129 KTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDD---SVTIISAGNDKMVKAWNLN 184
Query: 480 LGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVC 539
             ++     GH   + +L  SP G  +AS   D  + +W+L   K + T +    +F + 
Sbjct: 185 QFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLA 244
Query: 540 WNKEGDKIAACFA 552
           ++     +AA  A
Sbjct: 245 FSPNRYWLAAATA 257

>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314

Iteration: 1
 Score = 77.0 bits (188), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 64/253 (25%), Positives = 116/253 (45%), Gaps = 11/253 (4%)
Query: 307 LKCTLSKHKGPIFSLKWNK-KGDYLLTGSCDKTAIVWDVKTEEWK-----QQFEFHSGPT 360
           L+ TL  H G + SL  +  + + LL+ S DKT I W +  ++ K     + F+ HS   
Sbjct: 9   LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV 68
Query: 361 LDVDWRNNVSFATSST-DNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDD 419
            D     + ++A S++ D  + +  +      + F GH+ +V  V  D   S++ S S D
Sbjct: 69  QDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRD 128
Query: 420 VTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVE 479
            T K+W +K  + +  L  H+  +  +R  P     ++    + + SA  D  VK W++ 
Sbjct: 129 KTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDD---SVTIISAGNDKMVKAWNLN 184
Query: 480 LGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVC 539
             ++     GH   + +L  SP G  +AS   D  + +W+L   K + T +    +F + 
Sbjct: 185 QFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLA 244
Query: 540 WNKEGDKIAACFA 552
           ++     +AA  A
Sbjct: 245 FSPNRYWLAAATA 257

>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319

Iteration: 1
 Score = 77.0 bits (188), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 64/253 (25%), Positives = 116/253 (45%), Gaps = 11/253 (4%)
Query: 307 LKCTLSKHKGPIFSLKWNK-KGDYLLTGSCDKTAIVWDVKTEEWK-----QQFEFHSGPT 360
           L+ TL  H G + SL  +  + + LL+ S DKT I W +  ++ K     + F+ HS   
Sbjct: 9   LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV 68
Query: 361 LDVDWRNNVSFATSST-DNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDD 419
            D     + ++A S++ D  + +  +      + F GH+ +V  V  D   S++ S S D
Sbjct: 69  QDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRD 128
Query: 420 VTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVE 479
            T K+W +K  + +  L  H+  +  +R  P     ++    + + SA  D  VK W++ 
Sbjct: 129 KTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDD---SVTIISAGNDKMVKAWNLN 184
Query: 480 LGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVC 539
             ++     GH   + +L  SP G  +AS   D  + +W+L   K + T +    +F + 
Sbjct: 185 QFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLA 244
Query: 540 WNKEGDKIAACFA 552
           ++     +AA  A
Sbjct: 245 FSPNRYWLAAATA 257

>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313

Iteration: 1
 Score = 76.6 bits (187), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 64/253 (25%), Positives = 116/253 (45%), Gaps = 11/253 (4%)
Query: 307 LKCTLSKHKGPIFSLKWNK-KGDYLLTGSCDKTAIVWDVKTEEWK-----QQFEFHSGPT 360
           L+ TL  H G + SL  +  + + LL+ S DKT I W +  ++ K     + F+ HS   
Sbjct: 3   LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV 62
Query: 361 LDVDWRNNVSFATSST-DNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDD 419
            D     + ++A S++ D  + +  +      + F GH+ +V  V  D   S++ S S D
Sbjct: 63  QDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRD 122
Query: 420 VTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVE 479
            T K+W +K  + +  L  H+  +  +R  P     ++    + + SA  D  VK W++ 
Sbjct: 123 KTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDD---SVTIISAGNDKMVKAWNLN 178
Query: 480 LGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVC 539
             ++     GH   + +L  SP G  +AS   D  + +W+L   K + T +    +F + 
Sbjct: 179 QFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLA 238
Query: 540 WNKEGDKIAACFA 552
           ++     +AA  A
Sbjct: 239 FSPNRYWLAAATA 251

>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319

Iteration: 1
 Score = 75.1 bits (183), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 64/253 (25%), Positives = 114/253 (45%), Gaps = 11/253 (4%)
Query: 307 LKCTLSKHKGPIFSLKWNK-KGDYLLTGSCDKTAIVWDVKTEEWK-----QQFEFHSGPT 360
           L+ TL  H G + SL  +  + + LL+ S DKT I W +  ++ K     + F+ HS   
Sbjct: 9   LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV 68
Query: 361 LDVDWRNNVSFATSST-DNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDD 419
            D     + ++A S++ D  + +  +      + F GH+ +V  V  D   S + S S D
Sbjct: 69  QDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRD 128
Query: 420 VTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVE 479
            T K+W +K  + +  L  H+  +  +R  P     ++    + + SA  D  VK W++ 
Sbjct: 129 KTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDD---SVTIISAGNDKXVKAWNLN 184
Query: 480 LGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVC 539
             ++     GH   + +L  SP G  +AS   D  + +W+L   K   T +    +F + 
Sbjct: 185 QFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXYTLSAQDEVFSLA 244
Query: 540 WNKEGDKIAACFA 552
           ++     +AA  A
Sbjct: 245 FSPNRYWLAAATA 257

>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420

Iteration: 1
 Score = 73.6 bits (179), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 67/253 (26%), Positives = 111/253 (43%), Gaps = 22/253 (8%)
Query: 277 VTTLDWNGEGTLLATGSYDGQARIWSTNGDLKC-TLSKHKGPIFSLKWNKKGDYLLT-GS 334
           ++++ W  EG  LA G+   + ++W      +   ++ H   + SL WN    Y+L+ GS
Sbjct: 150 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN---SYILSSGS 206
Query: 335 CDKTAIVWDVKTEEWK-QQFEFHSGPTLDVDWR-NNVSFATSSTDNMIYV--CKIGEN-- 388
                   DV+  E        HS     + W  +    A+   DN++ V     GE   
Sbjct: 207 RSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGW 266
Query: 389 RPIKTFAGHQGEVNCVKWDPTGS-LLASC--SDDVTAKIWNMKQDKYVHDLREHSKEIYT 445
            P++TF  HQG V  V W P  S +LA+   + D   +IWN+     +  +  HS ++ +
Sbjct: 267 VPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHS-QVCS 325
Query: 446 IRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEY 505
           I WSP         ++LI       + + +W       +  L GH   V SL  SP G  
Sbjct: 326 ILWSPH-------YKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGAT 378
Query: 506 LASGSLDKSMHIW 518
           +AS + D+++ +W
Sbjct: 379 VASAAADETLRLW 391

>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431

Iteration: 1
 Score = 73.6 bits (179), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 67/253 (26%), Positives = 111/253 (43%), Gaps = 22/253 (8%)
Query: 277 VTTLDWNGEGTLLATGSYDGQARIWSTNGDLKC-TLSKHKGPIFSLKWNKKGDYLLT-GS 334
           ++++ W  EG  LA G+   + ++W      +   ++ H   + SL WN    Y+L+ GS
Sbjct: 161 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN---SYILSSGS 217
Query: 335 CDKTAIVWDVKTEEWK-QQFEFHSGPTLDVDWR-NNVSFATSSTDNMIYV--CKIGENR- 389
                   DV+  E        HS     + W  +    A+   DN++ V     GE   
Sbjct: 218 RSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGW 277
Query: 390 -PIKTFAGHQGEVNCVKWDPTGS-LLASC--SDDVTAKIWNMKQDKYVHDLREHSKEIYT 445
            P++TF  HQG V  V W P  S +LA+   + D   +IWN+     +  +  HS ++ +
Sbjct: 278 VPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHS-QVCS 336
Query: 446 IRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEY 505
           I WSP         ++LI       + + +W       +  L GH   V SL  SP G  
Sbjct: 337 ILWSPH-------YKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGAT 389
Query: 506 LASGSLDKSMHIW 518
           +AS + D+++ +W
Sbjct: 390 VASAAADETLRLW 402

>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814

Iteration: 1
 Score = 72.4 bits (176), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 66/268 (24%), Positives = 121/268 (45%), Gaps = 12/268 (4%)
Query: 266 VKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKC-TLSKHKGPIFSLKWN 324
           +K   + +S  V  +D++     + T  Y G+  IW+    ++  ++   + P+ + K+ 
Sbjct: 5   IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFI 64
Query: 325 KKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCK 384
            + ++++ GS D    V++  T E    FE H      +       +  S +D++     
Sbjct: 65  ARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLW 124
Query: 385 IGENRPI--KTFAGHQGEVNCVKWDPTG-SLLASCSDDVTAKIWNMKQDKYVHDLRE-HS 440
             EN     +TF GH+  V CV ++P   S  AS   D T K+W++ Q      L     
Sbjct: 125 NWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQE 184
Query: 441 KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFS 500
           + +  + + P       P++  ++ +AS D T+K+WD +    + +L GH   V    F 
Sbjct: 185 RGVNYVDYYPL------PDKPYMI-TASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFH 237
Query: 501 PTGEYLASGSLDKSMHIWSLKEGKIVKT 528
           PT   + SGS D ++ IW+    K+ KT
Sbjct: 238 PTLPIIISGSEDGTLKIWNSSTYKVEKT 265

>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 318

Iteration: 1
 Score = 72.0 bits (175), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 66/257 (25%), Positives = 110/257 (42%), Gaps = 22/257 (8%)
Query: 277 VTTLDWNGEGTLLATGSYDGQARIWSTNGDLKC-TLSKHKGPIFSLKWNKKGDYLLT-GS 334
           ++++ W  EG  LA G+   + ++W      +   ++ H   + SL WN    Y+L+ GS
Sbjct: 70  ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNS---YILSSGS 126
Query: 335 CDKTAIVWDVKTEEWK-QQFEFHSGPTLDVDWR-NNVSFATSSTDNMIYVCKIGENR--- 389
                   DV+  E        HS     + W  +    A+   DN++ V          
Sbjct: 127 RSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGW 186
Query: 390 -PIKTFAGHQGEVNCVKWDPTGS-LLASC--SDDVTAKIWNMKQDKYVHDLREHSKEIYT 445
            P++TF  HQG V  V W P  S +LA+   + D   +IWN+     +  +  HS ++ +
Sbjct: 187 VPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHS-QVCS 245
Query: 446 IRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEY 505
           I WSP         ++LI       + + +W       +  L GH   V SL  SP G  
Sbjct: 246 ILWSPH-------YKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGAT 298
Query: 506 LASGSLDKSMHIWSLKE 522
           +AS + D+++ +W   E
Sbjct: 299 VASAAADETLRLWRCFE 315

>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430

Iteration: 1
 Score = 71.6 bits (174), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 61/217 (28%), Positives = 89/217 (41%), Gaps = 49/217 (22%)
Query: 311 LSKHKGPIFSLKWNKK-GDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNV 369
           L  H+   + L WN     YLL+ S D T  +WD+                         
Sbjct: 177 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDIN------------------------ 212
Query: 370 SFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTG-SLLASCSDDVTAKIWNMK 428
             AT     +I    I        F GH   V  V W     SL  S +DD    IW+ +
Sbjct: 213 --ATPKEHRVIDAKNI--------FTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTR 262
Query: 429 QD---KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKL-L 484
            +   K  H +  H+ E+  + +        NP  + ILA+ S D TV LWD+   KL L
Sbjct: 263 NNNTSKPSHTVDAHTAEVNCLSF--------NPYSEFILATGSADKTVALWDLRNLKLKL 314
Query: 485 YSLNGHREPVYSLAFSPTGE-YLASGSLDKSMHIWSL 520
           +S   H++ ++ + +SP  E  LAS   D+ +H+W L
Sbjct: 315 HSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 351

>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430

Iteration: 1
 Score = 58.5 bits (140), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 83/171 (48%), Gaps = 8/171 (4%)
Query: 386 GENRPIKTFAGHQGEVNCVKWDPT-GSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIY 444
           GE +P     GHQ E   + W+P     L S SDD T  +W++      H + + +K I+
Sbjct: 169 GECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVID-AKNIF 227
Query: 445 TIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVE---LGKLLYSLNGHREPVYSLAFSP 501
           T   +       +   + +  S + D  + +WD       K  ++++ H   V  L+F+P
Sbjct: 228 TGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNP 287
Query: 502 TGEY-LASGSLDKSMHIWSLKEGKI-VKTYTGNGG-IFEVCWNKEGDKIAA 549
             E+ LA+GS DK++ +W L+  K+ + ++  +   IF+V W+   + I A
Sbjct: 288 YSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILA 338

>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432

Iteration: 1
 Score = 71.6 bits (174), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 61/217 (28%), Positives = 89/217 (41%), Gaps = 49/217 (22%)
Query: 311 LSKHKGPIFSLKWNKK-GDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNV 369
           L  H+   + L WN     YLL+ S D T  +WD+                         
Sbjct: 179 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDIN------------------------ 214
Query: 370 SFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTG-SLLASCSDDVTAKIWNMK 428
             AT     +I    I        F GH   V  V W     SL  S +DD    IW+ +
Sbjct: 215 --ATPKEHRVIDAKNI--------FTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTR 264
Query: 429 QD---KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKL-L 484
            +   K  H +  H+ E+  + +        NP  + ILA+ S D TV LWD+   KL L
Sbjct: 265 NNNTSKPSHTVDAHTAEVNCLSF--------NPYSEFILATGSADKTVALWDLRNLKLKL 316
Query: 485 YSLNGHREPVYSLAFSPTGE-YLASGSLDKSMHIWSL 520
           +S   H++ ++ + +SP  E  LAS   D+ +H+W L
Sbjct: 317 HSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 353

>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 83/171 (48%), Gaps = 8/171 (4%)
Query: 386 GENRPIKTFAGHQGEVNCVKWDPT-GSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIY 444
           GE +P     GHQ E   + W+P     L S SDD T  +W++      H + + +K I+
Sbjct: 171 GECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVID-AKNIF 229
Query: 445 TIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVE---LGKLLYSLNGHREPVYSLAFSP 501
           T   +       +   + +  S + D  + +WD       K  ++++ H   V  L+F+P
Sbjct: 230 TGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNP 289
Query: 502 TGEY-LASGSLDKSMHIWSLKEGKI-VKTYTGNGG-IFEVCWNKEGDKIAA 549
             E+ LA+GS DK++ +W L+  K+ + ++  +   IF+V W+   + I A
Sbjct: 290 YSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILA 340

>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422

Iteration: 1
 Score = 71.6 bits (174), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 61/217 (28%), Positives = 89/217 (41%), Gaps = 49/217 (22%)
Query: 311 LSKHKGPIFSLKWNKK-GDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNV 369
           L  H+   + L WN     YLL+ S D T  +WD+                         
Sbjct: 181 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDIN------------------------ 216
Query: 370 SFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTG-SLLASCSDDVTAKIWNMK 428
             AT     +I    I        F GH   V  V W     SL  S +DD    IW+ +
Sbjct: 217 --ATPKEHRVIDAKNI--------FTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTR 266
Query: 429 QD---KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKL-L 484
            +   K  H +  H+ E+  + +        NP  + ILA+ S D TV LWD+   KL L
Sbjct: 267 NNNTSKPSHTVDAHTAEVNCLSF--------NPYSEFILATGSADKTVALWDLRNLKLKL 318
Query: 485 YSLNGHREPVYSLAFSPTGE-YLASGSLDKSMHIWSL 520
           +S   H++ ++ + +SP  E  LAS   D+ +H+W L
Sbjct: 319 HSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 355

>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 83/171 (48%), Gaps = 8/171 (4%)
Query: 386 GENRPIKTFAGHQGEVNCVKWDPT-GSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIY 444
           GE +P     GHQ E   + W+P     L S SDD T  +W++      H + + +K I+
Sbjct: 173 GECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVID-AKNIF 231
Query: 445 TIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVE---LGKLLYSLNGHREPVYSLAFSP 501
           T   +       +   + +  S + D  + +WD       K  ++++ H   V  L+F+P
Sbjct: 232 TGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNP 291
Query: 502 TGEY-LASGSLDKSMHIWSLKEGKI-VKTYTGNGG-IFEVCWNKEGDKIAA 549
             E+ LA+GS DK++ +W L+  K+ + ++  +   IF+V W+   + I A
Sbjct: 292 YSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILA 342

>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604

Iteration: 1
 Score = 71.2 bits (173), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 65/268 (24%), Positives = 121/268 (45%), Gaps = 12/268 (4%)
Query: 266 VKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKC-TLSKHKGPIFSLKWN 324
           +K   + +S  V  +D++     + T  Y G+  +W+    ++  ++   + P+ + K+ 
Sbjct: 5   IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFI 64
Query: 325 KKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCK 384
            + ++++ GS D    V++  T E    FE H      +       +  S +D++     
Sbjct: 65  ARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLW 124
Query: 385 IGENRPI--KTFAGHQGEVNCVKWDPTG-SLLASCSDDVTAKIWNMKQDKYVHDLRE-HS 440
             EN     +TF GH+  V CV ++P   S  AS   D T K+W++ Q      L     
Sbjct: 125 NWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQE 184
Query: 441 KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFS 500
           + +  + + P       P++  ++ +AS D T+K+WD +    + +L GH   V    F 
Sbjct: 185 RGVNYVDYYPL------PDKPYMI-TASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFH 237
Query: 501 PTGEYLASGSLDKSMHIWSLKEGKIVKT 528
           PT   + SGS D ++ IW+    K+ KT
Sbjct: 238 PTLPIIISGSEDGTLKIWNSSTYKVEKT 265

>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310

Iteration: 1
 Score = 71.2 bits (173), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 65/268 (24%), Positives = 121/268 (45%), Gaps = 12/268 (4%)
Query: 266 VKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKC-TLSKHKGPIFSLKWN 324
           +K   + +S  V  +D++     + T  Y G+  +W+    ++  ++   + P+ + K+ 
Sbjct: 5   IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFI 64
Query: 325 KKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCK 384
            + ++++ GS D    V++  T E    FE H      +       +  S +D++     
Sbjct: 65  ARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLW 124
Query: 385 IGENRPI--KTFAGHQGEVNCVKWDPTG-SLLASCSDDVTAKIWNMKQDKYVHDLRE-HS 440
             EN     +TF GH+  V CV ++P   S  AS   D T K+W++ Q      L     
Sbjct: 125 NWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQE 184
Query: 441 KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFS 500
           + +  + + P       P++  ++ +AS D T+K+WD +    + +L GH   V    F 
Sbjct: 185 RGVNYVDYYPL------PDKPYMI-TASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFH 237
Query: 501 PTGEYLASGSLDKSMHIWSLKEGKIVKT 528
           PT   + SGS D ++ IW+    K+ KT
Sbjct: 238 PTLPIIISGSEDGTLKIWNSSTYKVEKT 265

>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304

Iteration: 1
 Score = 71.2 bits (173), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 65/268 (24%), Positives = 121/268 (45%), Gaps = 12/268 (4%)
Query: 266 VKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKC-TLSKHKGPIFSLKWN 324
           +K   + +S  V  +D++     + T  Y G+  +W+    ++  ++   + P+ + K+ 
Sbjct: 5   IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFI 64
Query: 325 KKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCK 384
            + ++++ GS D    V++  T E    FE H      +       +  S +D++     
Sbjct: 65  ARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLW 124
Query: 385 IGENRPI--KTFAGHQGEVNCVKWDPTG-SLLASCSDDVTAKIWNMKQDKYVHDLRE-HS 440
             EN     +TF GH+  V CV ++P   S  AS   D T K+W++ Q      L     
Sbjct: 125 NWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQE 184
Query: 441 KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFS 500
           + +  + + P       P++  ++ +AS D T+K+WD +    + +L GH   V    F 
Sbjct: 185 RGVNYVDYYPL------PDKPYMI-TASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFH 237
Query: 501 PTGEYLASGSLDKSMHIWSLKEGKIVKT 528
           PT   + SGS D ++ IW+    K+ KT
Sbjct: 238 PTLPIIISGSEDGTLKIWNSSTYKVEKT 265

>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330

Iteration: 1
 Score = 60.5 bits (145), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 67/284 (23%), Positives = 119/284 (41%), Gaps = 48/284 (16%)
Query: 275 KDVTTLDWNGEGTLLATGSYDGQARIWSTNG--------DLKCTLSKHKGPIFSLKWNKK 326
           K + ++ W    +LLA GS+D    IW+           DL   +  H+  +  + W+  
Sbjct: 59  KAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSND 118
Query: 327 GDYLLTGSCDKTAIVWDVKTEEWKQQFEF------HSGPTLDVDWR-NNVSFATSSTDNM 379
           G YL T S DK+  +W+  T+E  +++E       HS     V W  +    A+SS D+ 
Sbjct: 119 GYYLATCSRDKSVWIWE--TDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDT 176
Query: 380 IYVCKIGEN--RPIKTFAGHQGEVNCVKWDPTGSLLASC--SDDVTAKIWNMKQDKYVHD 435
           + + K  ++    +    GH+G V    +D T  +   C  SDD T ++W    D    D
Sbjct: 177 VRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDE-DD 235
Query: 436 LRE----------HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKL-L 484
            +E          H +++Y + W   G          ++AS   D  + +++   G+  +
Sbjct: 236 QQEWVCEAILPDVHKRQVYNVAWGFNG----------LIASVGADGVLAVYEEVDGEWKV 285
Query: 485 YSLNGHREPVYSLAFSPTGEY-----LASGSLDKSMHIWSLKEG 523
           ++       VY +      E      LA+G  D  ++ WSL++ 
Sbjct: 286 FAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEKA 329

>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/127 (34%), Positives = 61/127 (48%), Gaps = 20/127 (15%)
Query: 407 DPTGSLLASCSDDVTAKIWNMKQDKY----VHDLREHSKEIYTIRWSPTGSGTNNPNQQL 462
           D +  +LA+ S D   K+ ++K D +    V D   H K I ++ W P  S         
Sbjct: 21  DFSQGILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTS--------- 71
Query: 463 ILASASFDSTVKLWDVELGK-------LLYSLNGHREPVYSLAFSPTGEYLASGSLDKSM 515
           +LA+ SFDSTV +W  E          LL  + GH   V  +A+S  G YLA+ S DKS+
Sbjct: 72  LLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSV 131
Query: 516 HIWSLKE 522
            IW   E
Sbjct: 132 WIWETDE 138

>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425

Iteration: 1
 Score = 68.2 bits (165), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 63/225 (28%), Positives = 94/225 (41%), Gaps = 53/225 (23%)
Query: 304 NGDLKCTLSKHKGPIFSLKWNKK-GDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLD 362
           N DL+  L  H+   + L WN     +LL+ S D T  +WD+                  
Sbjct: 168 NPDLR--LRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISA---------------- 209
Query: 363 VDWRNNVSFATSSTDNMIYVCKIGENRPIKT-FAGHQGEVNCVKWDPTG-SLLASCSDDV 420
                              V K G+    KT F GH   V  V W     SL  S +DD 
Sbjct: 210 -------------------VPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQ 250
Query: 421 TAKIWNMKQD---KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWD 477
              IW+ + +   K  H +  H+ E+  + +        NP  + ILA+ S D TV LWD
Sbjct: 251 KLMIWDTRSNNTSKPSHSVDAHTAEVNCLSF--------NPYSEFILATGSADKTVALWD 302
Query: 478 VELGKL-LYSLNGHREPVYSLAFSPTGE-YLASGSLDKSMHIWSL 520
           +   KL L+S   H++ ++ + +SP  E  LAS   D+ +++W L
Sbjct: 303 LRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDL 347

>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 51/176 (28%), Positives = 87/176 (49%), Gaps = 18/176 (10%)
Query: 386 GENRPIKTFAGHQGEVNCVKWDP--TGSLLASCSDDVTAKIWNM----KQDKYVHDLREH 439
           GE  P     GHQ E   + W+P  +G LL S SDD T  +W++    K+ K V      
Sbjct: 165 GECNPDLRLRGHQKEGYGLSWNPNLSGHLL-SASDDHTICLWDISAVPKEGKVVD----- 218
Query: 440 SKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVE---LGKLLYSLNGHREPVYS 496
           +K I+T   +     + +   + +  S + D  + +WD       K  +S++ H   V  
Sbjct: 219 AKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNC 278
Query: 497 LAFSPTGEY-LASGSLDKSMHIWSLKEGKI-VKTYTGNGG-IFEVCWNKEGDKIAA 549
           L+F+P  E+ LA+GS DK++ +W L+  K+ + ++  +   IF+V W+   + I A
Sbjct: 279 LSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILA 334

>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 66.6 bits (161), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 62/224 (27%), Positives = 96/224 (42%), Gaps = 51/224 (22%)
Query: 304 NGDLKCTLSKHKGPIFSLKWNKK-GDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLD 362
           N DL+  L  H+   + L WN     +LL+ S D T  +WD+            +GP   
Sbjct: 170 NPDLR--LRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDIN-----------AGPK-- 214
Query: 363 VDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTG-SLLASCSDDVT 421
                                KI + + I  F GH   V  V W     SL  S +DD  
Sbjct: 215 -------------------EGKIVDAKAI--FTGHSAVVEDVAWHLLHESLFGSVADDQK 253
Query: 422 AKIWNMKQD---KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDV 478
             IW+ + +   K  H +  H+ E+  + +        NP  + ILA+ S D TV LWD+
Sbjct: 254 LXIWDTRSNTTSKPSHLVDAHTAEVNCLSF--------NPYSEFILATGSADKTVALWDL 305
Query: 479 ELGKL-LYSLNGHREPVYSLAFSPTGE-YLASGSLDKSMHIWSL 520
              KL L++   H++ ++ + +SP  E  LAS   D+ +++W L
Sbjct: 306 RNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDL 349

>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 52.4 bits (124), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 50/176 (28%), Positives = 84/176 (47%), Gaps = 18/176 (10%)
Query: 386 GENRPIKTFAGHQGEVNCVKWDP--TGSLLASCSDDVTAKIWNM----KQDKYVHDLREH 439
           GE  P     GHQ E   + W+   +G LL S SDD T  +W++    K+ K V      
Sbjct: 167 GECNPDLRLRGHQKEGYGLSWNSNLSGHLL-SASDDHTVCLWDINAGPKEGKIVD----- 220
Query: 440 SKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVE---LGKLLYSLNGHREPVYS 496
           +K I+T   +       +   + +  S + D  + +WD       K  + ++ H   V  
Sbjct: 221 AKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNC 280
Query: 497 LAFSPTGEY-LASGSLDKSMHIWSLKEGKI-VKTYTGNGG-IFEVCWNKEGDKIAA 549
           L+F+P  E+ LA+GS DK++ +W L+  K+ + T+  +   IF+V W+   + I A
Sbjct: 281 LSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILA 336

>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 66.6 bits (161), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 62/224 (27%), Positives = 96/224 (42%), Gaps = 51/224 (22%)
Query: 304 NGDLKCTLSKHKGPIFSLKWNKK-GDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLD 362
           N DL+  L  H+   + L WN     +LL+ S D T  +WD+            +GP   
Sbjct: 170 NPDLR--LRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDIN-----------AGPK-- 214
Query: 363 VDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTG-SLLASCSDDVT 421
                                KI + + I  F GH   V  V W     SL  S +DD  
Sbjct: 215 -------------------EGKIVDAKAI--FTGHSAVVEDVAWHLLHESLFGSVADDQK 253
Query: 422 AKIWNMKQD---KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDV 478
             IW+ + +   K  H +  H+ E+  + +        NP  + ILA+ S D TV LWD+
Sbjct: 254 LMIWDTRSNTTSKPSHLVDAHTAEVNCLSF--------NPYSEFILATGSADKTVALWDL 305
Query: 479 ELGKL-LYSLNGHREPVYSLAFSPTGE-YLASGSLDKSMHIWSL 520
              KL L++   H++ ++ + +SP  E  LAS   D+ +++W L
Sbjct: 306 RNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDL 349

>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 52.4 bits (124), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 50/176 (28%), Positives = 84/176 (47%), Gaps = 18/176 (10%)
Query: 386 GENRPIKTFAGHQGEVNCVKWDP--TGSLLASCSDDVTAKIWNM----KQDKYVHDLREH 439
           GE  P     GHQ E   + W+   +G LL S SDD T  +W++    K+ K V      
Sbjct: 167 GECNPDLRLRGHQKEGYGLSWNSNLSGHLL-SASDDHTVCLWDINAGPKEGKIVD----- 220
Query: 440 SKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVE---LGKLLYSLNGHREPVYS 496
           +K I+T   +       +   + +  S + D  + +WD       K  + ++ H   V  
Sbjct: 221 AKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNC 280
Query: 497 LAFSPTGEY-LASGSLDKSMHIWSLKEGKI-VKTYTGNGG-IFEVCWNKEGDKIAA 549
           L+F+P  E+ LA+GS DK++ +W L+  K+ + T+  +   IF+V W+   + I A
Sbjct: 281 LSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILA 336

>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The Structure Of A C. Elegans Homologue Of Yeast Actin Interacting Protein 1 (Aip1). Length = 611

Iteration: 1
 Score = 63.2 bits (152), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 64/236 (27%), Positives = 98/236 (41%), Gaps = 43/236 (18%)
Query: 272 EKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGD---LKCTLSKHKGPIFSLKWNKKGD 328
           E S   T    +  G   A+G   G  RIW T      LK T+    GP+  + W+ +  
Sbjct: 57  EHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSE-- 114
Query: 329 YLLTGSCDKTAIVWDVKTEEWKQQFEFHSGP-----TLDVDWRNNVSFATSSTDNMIY-- 381
                   + A V + + E +   F F +G      T      N+V F  S    +I   
Sbjct: 115 ------SKRIAAVGEGR-ERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGS 167
Query: 382 ---VCKIGENRPIK---TFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWN--------M 427
                 I E  P K   TF  H   V+ V+++P GSL AS   D T  ++N        +
Sbjct: 168 DDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGV 227
Query: 428 KQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKL 483
            +D  + ++  HS  ++ + WSP G+          +ASAS D T+K+W+V   K+
Sbjct: 228 FEDDSLKNV-AHSGSVFGLTWSPDGTK---------IASASADKTIKIWNVATLKV 273

>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The Structure Of A C. Elegans Homologue Of Yeast Actin Interacting Protein 1 (Aip1). Length = 611

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/220 (24%), Positives = 87/220 (39%), Gaps = 22/220 (10%)
Query: 322 KWNKKGDYLLTGSCDKTAIVWDVK--TEEWKQQFEFHSGPTLDVDW---RNNVSFATSST 376
           K +  G Y  +G       +WD    T   K      SGP  D+ W      ++      
Sbjct: 66  KTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGR 125
Query: 377 DNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSL-LASCSDDVTAKIWNMKQDKYVHD 435
           +   +V             G    +N V + P+    + S SDD T  I+     K+   
Sbjct: 126 ERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKST 185
Query: 436 LREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLN------- 488
             EH+K ++++R++P GS         + AS   D T+ L++   G              
Sbjct: 186 FGEHTKFVHSVRYNPDGS---------LFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNV 236
Query: 489 GHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKT 528
            H   V+ L +SP G  +AS S DK++ IW++   K+ KT
Sbjct: 237 AHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKT 276

>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The Structure Of A C. Elegans Homologue Of Yeast Actin Interacting Protein 1 (Aip1). Length = 611

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 43/225 (19%), Positives = 85/225 (37%), Gaps = 46/225 (20%)
Query: 380 IYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYV--HDLR 437
           +Y   +G     + +  H  +    K  P+G   AS       +IW+  Q  ++    + 
Sbjct: 41  VYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIP 100
Query: 438 EHSKEIYTIRWSP----------------------TGSGTNN--------------PNQQ 461
             S  +  I W                        TG+   N              P++ 
Sbjct: 101 VFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRP 160
Query: 462 LILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLK 521
             + S S D+TV +++    K   +   H + V+S+ ++P G   AS   D ++ +++  
Sbjct: 161 FRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGV 220
Query: 522 EGK--------IVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCV 558
           +G          +K    +G +F + W+ +G KIA+  A+ T+ +
Sbjct: 221 DGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKI 265

>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex Length = 401

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 60/265 (22%), Positives = 117/265 (44%), Gaps = 20/265 (7%)
Query: 272 EKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKC-TLSKHKGPIFSLKWNKKGDYL 330
           ++S  V ++ W+ +G+ L+ G  +G   I+      K  T++ H+  +  L WN+    L
Sbjct: 132 DESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWNRH--VL 189
Query: 331 LTGSCDKTAIVWDVKTEEWK-QQFEFHSGPTLDVDWRNN-VSFATSSTDNMIYVCKIGEN 388
            +GS        DV+    +    + HS     + WR++ +  A+   DN++ +     +
Sbjct: 190 SSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSS 249
Query: 389 RPIKTFAGHQGEVNCVKWDP-TGSLLASCSDDVTAKI--WNMKQDKYVHDLREHSKEIYT 445
            P  T   H   V  V W P   +LLA+    +  +I  WN      V+ + +   ++ +
Sbjct: 250 IPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTV-DAGSQVTS 308
Query: 446 IRWSPTGSGTNNPNQQLILASASF-DSTVKLWDVELGKLLYSLN--GHREPVYSLAFSPT 502
           + WSP        + + I+++  F D+ + +W      L   ++   H   V   A SP 
Sbjct: 309 LIWSP--------HSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPD 360
Query: 503 GEYLASGSLDKSMHIWSLKEGKIVK 527
           G  L++ + D+++  W + +G  VK
Sbjct: 361 GRILSTAASDENLKFWRVYDGDHVK 385

>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex Length = 401

Iteration: 1
 Score = 59.7 bits (143), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 45/190 (23%), Positives = 83/190 (43%), Gaps = 16/190 (8%)
Query: 363 VDWRNNVSFATSSTDN-MIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVT 421
           V W ++ SF +    N ++ +  +     ++T AGHQ  V C+ W+    +L+S S    
Sbjct: 140 VKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWN--RHVLSSGSRSGA 197
Query: 422 AKIWNMK-QDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL 480
               +++  +  +  L+ HS E+  + W   G         L LAS   D+ V++WD   
Sbjct: 198 IHHHDVRIANHQIGTLQGHSSEVCGLAWRSDG---------LQLASGGNDNVVQIWDARS 248
Query: 481 GKLLYSLNGHREPVYSLAFSPTGEYLAS---GSLDKSMHIWSLKEGKIVKTYTGNGGIFE 537
               ++   H   V ++A+ P    L +   G++DK +H W+   G  V T      +  
Sbjct: 249 SIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTS 308
Query: 538 VCWNKEGDKI 547
           + W+    +I
Sbjct: 309 LIWSPHSKEI 318

>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form Length = 402

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 73/153 (47%), Gaps = 20/153 (13%)
Query: 384 KIGENRPIKTFAGHQGEVNCVKWDP-TGSLLASCSDDVTAKIWNMKQDKYVHDLRE---- 438
           ++ +N P+    GH   V  + W P   +++AS S+D T  +W +     V  LRE    
Sbjct: 69  RVDKNVPL--VCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVIT 126
Query: 439 ---HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSL--NGHREP 493
              H+K +  + W PT         Q +L SA  D+ + +WDV  G  + +L  + H + 
Sbjct: 127 LEGHTKRVGIVAWHPTA--------QNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDT 178
Query: 494 VYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIV 526
           +YS+ +S  G  + +   DK + +   ++G +V
Sbjct: 179 IYSVDWSRDGALICTSCRDKRVRVIEPRKGTVV 211

>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade Length = 379

Iteration: 1
 Score = 56.2 bits (134), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 63/254 (24%), Positives = 96/254 (37%), Gaps = 59/254 (23%)
Query: 286 GTLLATGSYDGQARIWSTNGD---LKCTLSKHKGPIFSLKWN--KKGDYLLTGSCDKTAI 340
           G  LAT S D   +I+   G+   L  TL+ H+GP++ + W   K G  L + S D   +
Sbjct: 23  GKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL 82
Query: 341 VWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGE 400
           +W  +   W Q                                       I   A H   
Sbjct: 83  IWKEENGRWSQ---------------------------------------IAVHAVHSAS 103
Query: 401 VNCVKWDP--TGSLLASCSDDVTAKIWNMKQDKYVHD--LREHSKEIYTIRWSPT----G 452
           VN V+W P   G LL   S D    +   K++       +  H+  + +  W+P      
Sbjct: 104 VNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED 163
Query: 453 SGTNNPNQQLILASASFDSTVKLW----DVELGKLLYSLNGHREPVYSLAFSPT---GEY 505
              N   +     +   D+ VK+W    D +   L  +L GH + V  +A+SPT     Y
Sbjct: 164 GEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSY 223
Query: 506 LASGSLDKSMHIWS 519
           LAS S D++  IW+
Sbjct: 224 LASVSQDRTCIIWT 237

>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice Length = 753

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 63/254 (24%), Positives = 96/254 (37%), Gaps = 59/254 (23%)
Query: 286 GTLLATGSYDGQARIWSTNGD---LKCTLSKHKGPIFSLKWN--KKGDYLLTGSCDKTAI 340
           G  LAT S D   +I+   G+   L  TL+ H+GP++ + W   K G  L + S D   +
Sbjct: 21  GKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL 80
Query: 341 VWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGE 400
           +W  +   W Q                                       I   A H   
Sbjct: 81  IWKEENGRWSQ---------------------------------------IAVHAVHSAS 101
Query: 401 VNCVKWDP--TGSLLASCSDDVTAKIWNMKQDKYVHD--LREHSKEIYTIRWSPT----G 452
           VN V+W P   G LL   S D    +   K++       +  H+  + +  W+P      
Sbjct: 102 VNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED 161
Query: 453 SGTNNPNQQLILASASFDSTVKLW----DVELGKLLYSLNGHREPVYSLAFSPT---GEY 505
              N   +     +   D+ VK+W    D +   L  +L GH + V  +A+SPT     Y
Sbjct: 162 GEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSY 221
Query: 506 LASGSLDKSMHIWS 519
           LAS S D++  IW+
Sbjct: 222 LASVSQDRTCIIWT 235

>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE Copii Vesicular Coat, Native Version Length = 297

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 63/254 (24%), Positives = 96/254 (37%), Gaps = 59/254 (23%)
Query: 286 GTLLATGSYDGQARIWSTNGD---LKCTLSKHKGPIFSLKWN--KKGDYLLTGSCDKTAI 340
           G  LAT S D   +I+   G+   L  TL+ H+GP++ + W   K G  L + S D   +
Sbjct: 21  GKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL 80
Query: 341 VWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGE 400
           +W  +   W Q                                       I   A H   
Sbjct: 81  IWKEENGRWSQ---------------------------------------IAVHAVHSAS 101
Query: 401 VNCVKWDP--TGSLLASCSDDVTAKIWNMKQDKYVHD--LREHSKEIYTIRWSPT----G 452
           VN V+W P   G LL   S D    +   K++       +  H+  + +  W+P      
Sbjct: 102 VNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED 161
Query: 453 SGTNNPNQQLILASASFDSTVKLW----DVELGKLLYSLNGHREPVYSLAFSPT---GEY 505
              N   +     +   D+ VK+W    D +   L  +L GH + V  +A+SPT     Y
Sbjct: 162 GEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSY 221
Query: 506 LASGSLDKSMHIWS 519
           LAS S D++  IW+
Sbjct: 222 LASVSQDRTCIIWT 235

>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE Copii Vesicular Coat Length = 297

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 60/254 (23%), Positives = 96/254 (37%), Gaps = 59/254 (23%)
Query: 286 GTLLATGSYDGQARIWSTNGD---LKCTLSKHKGPIFSLKWN--KKGDYLLTGSCDKTAI 340
           G  +AT S D   +I+   G+   L  TL+ H+GP++ + W   K G  L + S D   +
Sbjct: 21  GKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVM 80
Query: 341 VWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGE 400
           +W  +   W Q                                       I   A H   
Sbjct: 81  IWKEENGRWSQ---------------------------------------IAVHAVHSAS 101
Query: 401 VNCVKWDP--TGSLLASCSDDVTAKIWNMKQDKYVHD--LREHSKEIYTIRWSPT----G 452
           VN V+W P   G +L   S D    +   K++       +  H+  + +  W+P      
Sbjct: 102 VNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED 161
Query: 453 SGTNNPNQQLILASASFDSTVKLW----DVELGKLLYSLNGHREPVYSLAFSPT---GEY 505
              N   +     +   D+ VK+W    D +   L  +L GH + V  +A+SPT     Y
Sbjct: 162 GEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSY 221
Query: 506 LASGSLDKSMHIWS 519
           +AS S D++  IW+
Sbjct: 222 MASVSQDRTCIIWT 235

>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor Eif3i Complex With Eif3b C-Terminus (655-700) Length = 369

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 69/290 (23%), Positives = 115/290 (39%), Gaps = 51/290 (17%)
Query: 275 KDVTTLDWNGEGTLLATGSYDGQARIW-STNGDLKCTLSKHKGPIFSLKWNKKGDYLLTG 333
           + +T + +N EG LL + S D  A +W S NG+   TL  H G I+S+  +    Y +TG
Sbjct: 33  RPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTG 92
Query: 334 SCDKTAIVWDVKTEE----WKQQFEFHSGPTLDVDWRNNVSFATSSTDNM--------IY 381
           S D +  +WDV   +    WK        P   V++    ++  +  DN+        IY
Sbjct: 93  SADYSIKLWDVSNGQCVATWKSPV-----PVKRVEFSPCGNYFLAILDNVMKNPGSINIY 147
Query: 382 ----------VCKIGENRPIKTFAGHQG--EVNCVKWDPTGSLLASCSDDVTAKIWNMKQ 429
                     + K+ E  PI     H+G        W   G  + +   D     +++  
Sbjct: 148 EIERDSATHELTKVSE-EPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSN 206
Query: 430 D-KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLN 488
           + +YV  +  H K I  +++SP               ++S D+   L DV   ++L    
Sbjct: 207 NYEYVDSIDLHEKSISDMQFSP---------DLTYFITSSRDTNSFLVDVSTLQVLKKYE 257
Query: 489 GHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEV 538
               P+ +   +P  E++  G           +E K V T + N G FE 
Sbjct: 258 TDC-PLNTAVITPLKEFIILG---------GGQEAKDVTTTSANEGKFEA 297

>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX Length = 349

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 72/151 (47%), Gaps = 22/151 (14%)
Query: 395 AGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDL----REHSKEIYTIRWSP 450
           +GH   V+ V +D  G  +A+CS D   K++ + +D    +L    R H   I  I W+ 
Sbjct: 6   SGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWA- 64
Query: 451 TGSGTNNPNQQLILASASFDSTVKLWDVELGK---------LLYSLNGHREPVYSLAFSP 501
                 +P    I+ASAS+D TVKLW+ +  +          L +LN  +  +YS+ F+P
Sbjct: 65  ------SPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAP 118
Query: 502 T--GEYLASGSLDKSMHIWSLKEGKIVKTYT 530
              G  LA    D  + ++   E   ++++T
Sbjct: 119 AHLGLKLACLGNDGILRLYDALEPSDLRSWT 149

>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1, Space Group P21 Length = 351

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 72/151 (47%), Gaps = 22/151 (14%)
Query: 395 AGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDL----REHSKEIYTIRWSP 450
           +GH   V+ V +D  G  +A+CS D   K++ + +D    +L    R H   I  I W+ 
Sbjct: 8   SGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWA- 66
Query: 451 TGSGTNNPNQQLILASASFDSTVKLWDVELGK---------LLYSLNGHREPVYSLAFSP 501
                 +P    I+ASAS+D TVKLW+ +  +          L +LN  +  +YS+ F+P
Sbjct: 67  ------SPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAP 120
Query: 502 T--GEYLASGSLDKSMHIWSLKEGKIVKTYT 530
              G  LA    D  + ++   E   ++++T
Sbjct: 121 AHLGLKLACLGNDGILRLYDALEPSDLRSWT 151

>pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1, Space Group P21212 Length = 351

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 72/151 (47%), Gaps = 22/151 (14%)
Query: 395 AGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDL----REHSKEIYTIRWSP 450
           +GH   V+ V +D  G  +A+CS D   K++ + +D    +L    R H   I  I W+ 
Sbjct: 8   SGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWA- 66
Query: 451 TGSGTNNPNQQLILASASFDSTVKLWDVELGK---------LLYSLNGHREPVYSLAFSP 501
                 +P    I+ASAS+D TVKLW+ +  +          L +LN  +  +YS+ F+P
Sbjct: 67  ------SPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAP 120
Query: 502 T--GEYLASGSLDKSMHIWSLKEGKIVKTYT 530
              G  LA    D  + ++   E   ++++T
Sbjct: 121 AHLGLKLACLGNDGILRLYDALEPSDLRSWT 151

>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane Length = 316

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 72/274 (26%), Positives = 110/274 (40%), Gaps = 50/274 (18%)
Query: 286 GTLLATGSYDGQARIWST-NGD--LKCTLSKHKGPIFSLKWNKK--GDYLLTGSCDKTAI 340
           GT LAT S D   +I+   NG   L   L  H+GP++ + W     G+ L + S D+  I
Sbjct: 25  GTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVI 84
Query: 341 VWDVKTEEWKQQFEF--HSGPTLDVDWRNN---VSFATSSTDNMIYVCKI---GENRPIK 392
           +W  +   W++  E   H      V W  +   +  A  S+D  I +      G+    K
Sbjct: 85  IWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKK 144
Query: 393 TFAGHQGEVNCVKWDPT---GSLL--------------ASCSDDVTAKIWNMKQD---KY 432
               H    N V W P    GSL+              AS   D   K+W  ++D   K 
Sbjct: 145 INNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKE 204
Query: 433 VHDLREHSKEIYTIRWSPT-GSGTNNPNQQLILASASFDSTVKLWDVELG-------KLL 484
              L  HS  +  + W+P+ G  T+       +AS S D  V +W  +         KLL
Sbjct: 205 EQKLEAHSDWVRDVAWAPSIGLPTST------IASCSQDGRVFIWTCDDASSNTWSPKLL 258
Query: 485 YSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIW 518
           +  N   + V+ +++S T   LA    D  + +W
Sbjct: 259 HKFN---DVVWHVSWSITANILAVSGGDNKVTLW 289

>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane Length = 316

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 45/84 (53%), Gaps = 7/84 (8%)
Query: 464 LASASFDSTVKLWDVELGK--LLYSLNGHREPVYSLAFSPT--GEYLASGSLDKSMHIWS 519
           LA+ S D +VK++DV  G   L+  L GH  PV+ +A++    G  LAS S D+ + IW 
Sbjct: 28  LATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR 87
Query: 520 LKEGKIVKTYTGNG---GIFEVCW 540
            + G   K++   G    +  VCW
Sbjct: 88  EENGTWEKSHEHAGHDSSVNSVCW 111

>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1 Length = 313

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 67/275 (24%), Positives = 110/275 (40%), Gaps = 76/275 (27%)
Query: 289 LATGSYDGQARIWSTNGD-LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTE 347
           +A+ S DG  R+WS +   L   +   +G + S+ ++ + + LL G  D           
Sbjct: 32  VASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTXI-------- 83
Query: 348 EWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWD 407
                    +G  L         FATS  D            P+ T  GHQG V  + + 
Sbjct: 84  ---------NGVPL---------FATSGED------------PLYTLIGHQGNVCSLSFQ 113
Query: 408 PTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIY-------------------TIR- 447
               ++ S S D TAK+W  K+   V++L+ H+  ++                   TI+ 
Sbjct: 114 D--GVVISGSWDKTAKVW--KEGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKL 169
Query: 448 WS-----PTGSGTNNPNQQLI-------LASASFDSTVKLWDVELGKLLYSLNGHREPVY 495
           W       T SG +N   + +         S S D  +KL D   G +L +  GH   VY
Sbjct: 170 WQNDKVIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDXHTGDVLRTYEGHESFVY 229
Query: 496 SLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYT 530
            +   P G+ ++ G  D+++ IWS + G + +  T
Sbjct: 230 CIKLLPNGDIVSCGE-DRTVRIWSKENGSLKQVIT 263

>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction Between The Nucleoporin Nup98 And The Mrna Export Factor Rae1 Length = 368

Iteration: 1
 Score = 48.5 bits (114), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 6/84 (7%)
Query: 286 GTLLATGSYDGQARIWSTNGDLKCTLSK----HKGPIFSLKWNKKGDYLLTGSCDKTAIV 341
           G  L  GS+    R W    D   T+ K    H GP+  + W+  G  + T SCDKTA +
Sbjct: 54  GNFLIAGSWANDVRCWEVQ-DSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKM 112
Query: 342 WDVKTEEWKQQFEFHSGPTLDVDW 365
           WD+ + +   Q   H  P   + W
Sbjct: 113 WDLSSNQ-AIQIAQHDAPVKTIHW 135

>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction Between The Nucleoporin Nup98 And The Mrna Export Factor Rae1 Length = 368

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 8/83 (9%)
Query: 397 HQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTN 456
           H G V  V W   GS + + S D TAK+W++  ++ +  + +H   + TI W        
Sbjct: 85  HTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHW------IK 137
Query: 457 NPNQQLILASASFDSTVKLWDVE 479
            PN   ++ + S+D T+K WD  
Sbjct: 138 APNYSCVM-TGSWDKTLKFWDTR 159

>pdb|3DXK|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR Ck0944636 Length = 372

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 58/265 (21%), Positives = 101/265 (38%), Gaps = 55/265 (20%)
Query: 282 WNGEGTLLATGSYDGQARIWSTNGDLKCT---LSKHKGPIFSLKWNKKGDYLLTGSCDKT 338
           WN + T +A    + +  I+  +G+       L +H G +  + W    + ++T   D+ 
Sbjct: 16  WNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGIDWAPDSNRIVTCGTDRN 75
Query: 339 AIVWDVKTEEWKQQFEFH--SGPTLDVDWR-NNVSFATSSTDNMIYVCKIGE-------- 387
           A VW +K   WK        +     V W  N   FA  S   +I +C   +        
Sbjct: 76  AYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCK 135
Query: 388 --NRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYT 445
              +PI++       V  + W P   LLA+ S D   +I++     Y+ ++ E       
Sbjct: 136 HIKKPIRS------TVLSLDWHPNSVLLAAGSCDFKCRIFS----AYIKEVEE------- 178
Query: 446 IRWSPTGSGTNNPNQQLILASA---------------------SFDSTVKLWDVELGKLL 484
            R +PT  G+  P  +L+  S+                     S DSTV L D +    +
Sbjct: 179 -RPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAV 237
Query: 485 YSLNGHREPVYSLAFSPTGEYLASG 509
            +L     P+ ++ F      +A+G
Sbjct: 238 ATLASETLPLLAVTFITESSLVAAG 262

>pdb|3DXK|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR Ck0944636 Length = 372

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/185 (21%), Positives = 74/185 (40%), Gaps = 26/185 (14%)
Query: 397 HQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDL--REHSKEIYTIRWSPTGSG 454
           H G+V  + W P  + + +C  D  A +W +K   +   L     ++    +RW+P    
Sbjct: 51  HNGQVTGIDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKK 110
Query: 455 TNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKS 514
               +   +++   F+     W  +  K        R  V SL + P    LA+GS D  
Sbjct: 111 FAVGSGSRVISICYFEQENDWWVCKHIK-----KPIRSTVLSLDWHPNSVLLAAGSCDFK 165
Query: 515 MHIWS--LKEGK-----------------IVKTYTGNGGIFEVCWNKEGDKIAACFANHT 555
             I+S  +KE +                 + ++ +  G +  VC++  G ++A    + T
Sbjct: 166 CRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDST 225
Query: 556 VCVLD 560
           VC+ D
Sbjct: 226 VCLAD 230

>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex Length = 408

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 57/246 (23%), Positives = 93/246 (37%), Gaps = 44/246 (17%)
Query: 314 HKGPIFSLKWNK-KGDYLLTGSCDKTAIVWDVKTEEWKQQF-------------EFHSGP 359
           H G I +L     +G Y+L+G  D   +++D++    +  +             + H   
Sbjct: 42  HGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYS 101
Query: 360 TLDVDW--RNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGS---LLA 414
              V W   +   F +SS D  + V      +    F   +  V      P  +   L+A
Sbjct: 102 VETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVF-NFEETVYSHHMSPVSTKHCLVA 160
Query: 415 SCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVK 474
             +     ++ ++K     H L+ H +EI  + WSP            ILA+AS DS VK
Sbjct: 161 VGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSP--------RYDYILATASADSRVK 212
Query: 475 LWDVELGK-LLYSLN---------------GHREPVYSLAFSPTGEYLASGSLDKSMHIW 518
           LWDV      L +L+                H   V  L F+  G +L +   D  M +W
Sbjct: 213 LWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLW 272
Query: 519 SLKEGK 524
           +   G+
Sbjct: 273 NSSNGE 278

>pdb|1K8K|C Chain C, Crystal Structure Of Arp23 COMPLEX Length = 372

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 58/265 (21%), Positives = 101/265 (38%), Gaps = 55/265 (20%)
Query: 282 WNGEGTLLATGSYDGQARIWSTNGDLKCT---LSKHKGPIFSLKWNKKGDYLLTGSCDKT 338
           WN + T +A    + +  I+  +G+       L +H G +  + W    + ++T   D+ 
Sbjct: 16  WNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRN 75
Query: 339 AIVWDVKTEEWKQQFEFH--SGPTLDVDWR-NNVSFATSSTDNMIYVCKIGE-------- 387
           A VW +K   WK        +     V W  N   FA  S   +I +C   +        
Sbjct: 76  AYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCK 135
Query: 388 --NRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYT 445
              +PI++       V  + W P   LLA+ S D   +I++     Y+ ++ E       
Sbjct: 136 HIKKPIRS------TVLSLDWHPNSVLLAAGSCDFKCRIFS----AYIKEVEE------- 178
Query: 446 IRWSPTGSGTNNPNQQLILASA---------------------SFDSTVKLWDVELGKLL 484
            R +PT  G+  P  +L+  S+                     S DSTV L D +    +
Sbjct: 179 -RPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAV 237
Query: 485 YSLNGHREPVYSLAFSPTGEYLASG 509
            +L     P+ ++ F      +A+G
Sbjct: 238 ATLASETLPLLAVTFITESSLVAAG 262

>pdb|1K8K|C Chain C, Crystal Structure Of Arp23 COMPLEX Length = 372

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/185 (22%), Positives = 74/185 (40%), Gaps = 26/185 (14%)
Query: 397 HQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDL--REHSKEIYTIRWSPTGSG 454
           H G+V  V W P  + + +C  D  A +W +K   +   L     ++    +RW+P    
Sbjct: 51  HNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKK 110
Query: 455 TNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKS 514
               +   +++   F+     W  +  K        R  V SL + P    LA+GS D  
Sbjct: 111 FAVGSGSRVISICYFEQENDWWVCKHIK-----KPIRSTVLSLDWHPNSVLLAAGSCDFK 165
Query: 515 MHIWS--LKEGK-----------------IVKTYTGNGGIFEVCWNKEGDKIAACFANHT 555
             I+S  +KE +                 + ++ +  G +  VC++  G ++A    + T
Sbjct: 166 CRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDST 225
Query: 556 VCVLD 560
           VC+ D
Sbjct: 226 VCLAD 230

>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE Copii Vesicular Coat, Selenomethionine Version Length = 297

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 60/254 (23%), Positives = 92/254 (36%), Gaps = 59/254 (23%)
Query: 286 GTLLATGSYDGQARIWSTNGD---LKCTLSKHKGPIFSLKWN--KKGDYLLTGSCDKTAI 340
           G   AT S D   +I+   G+   L  TL+ H+GP++ + W   K G  L + S D    
Sbjct: 21  GKRXATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVX 80
Query: 341 VWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGE 400
           +W  +   W Q                                       I   A H   
Sbjct: 81  IWKEENGRWSQ---------------------------------------IAVHAVHSAS 101
Query: 401 VNCVKWDP--TGSLLASCSDDVTAKIWNMKQDKYVHD--LREHSKEIYTIRWSPT----G 452
           VN V+W P   G  L   S D    +   K++       +  H+  + +  W+P      
Sbjct: 102 VNSVQWAPHEYGPXLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED 161
Query: 453 SGTNNPNQQLILASASFDSTVKLW----DVELGKLLYSLNGHREPVYSLAFSPT---GEY 505
              N   +     +   D+ VK+W    D +   L  +L GH + V  +A+SPT     Y
Sbjct: 162 GEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSY 221
Query: 506 LASGSLDKSMHIWS 519
            AS S D++  IW+
Sbjct: 222 XASVSQDRTCIIWT 235

>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s Reg Particle Of The Proteasome Length = 417

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 9/93 (9%)
Query: 437 REHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYS 496
           + H  EI  +++ P+G           L S+S D  +K+W V+ G    +L GHR  V  
Sbjct: 133 QAHVSEITKLKFFPSGEA---------LISSSQDMQLKIWSVKDGSNPRTLIGHRATVTD 183
Query: 497 LAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTY 529
           +A    G  + S SLD ++ +W    G  + T+
Sbjct: 184 IAIIDRGRNVLSASLDGTIRLWECGTGTTIHTF 216

>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1 Length = 402

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/169 (24%), Positives = 73/169 (43%), Gaps = 25/169 (14%)
Query: 356 HSGPTLDVDW--RNNVSFATSSTDNMIYVCKIGE-------NRPIKTFAGHQGEVNCVKW 406
           H+ P LD+ W   N+   A+ S D  + V +I +         P+ T  GH   V  V W
Sbjct: 80  HTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAW 139
Query: 407 DPTG-SLLASCSDDVTAKIWNMKQDKYVHDLRE--HSKEIYTIRWSPTGSGTNNPNQQLI 463
            PT  ++L S   D    +W++     V  L    H   IY++ WS  G+         +
Sbjct: 140 HPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGA---------L 190
Query: 464 LASASFDSTVKLWDVELGKLLYSLNGHRE---PVYSLAFSPTGEYLASG 509
           + ++  D  V++ +   G ++   +   E   PV+++ F   G+ L +G
Sbjct: 191 ICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAV-FVSEGKILTTG 238

>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14 Length = 420

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 9/93 (9%)
Query: 437 REHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYS 496
           + H  EI  +++ P+G           L S+S D  +K+W V+ G    +L GHR  V  
Sbjct: 136 QAHVSEITKLKFFPSGEA---------LISSSQDMQLKIWSVKDGSNPRTLIGHRATVTD 186
Query: 497 LAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTY 529
           +A    G  + S SLD ++ +W    G  + T+
Sbjct: 187 IAIIDRGRNVLSASLDGTIRLWECGTGTTIHTF 219

>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex Length = 436

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 51/116 (43%), Gaps = 13/116 (11%)
Query: 411 SLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFD 470
           S +    D+V   I      K + +LR H K++  +          NP     LA+AS D
Sbjct: 222 SRMVVTGDNVGNVILLNMDGKELWNLRMHKKKVTHV--------ALNPCCDWFLATASVD 273
Query: 471 STVKLWDVEL----GKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKE 522
            TVK+WD+         LYSL  HR PV +  FSP G  L +      + ++S  +
Sbjct: 274 QTVKIWDLRQVRGKASFLYSLP-HRHPVNAACFSPDGARLLTTDQKSEIRVYSASQ 328

>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein (Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna Repair Length = 436

Iteration: 1
 Score = 45.4 bits (106), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 51/116 (43%), Gaps = 13/116 (11%)
Query: 411 SLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFD 470
           S +    D+V   I      K + +LR H K++  +          NP     LA+AS D
Sbjct: 221 SRMVVTGDNVGNVILLNMDGKELWNLRMHKKKVTHV--------ALNPCCDWFLATASVD 272
Query: 471 STVKLWDVEL----GKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKE 522
            TVK+WD+         LYSL  HR PV +  FSP G  L +      + ++S  +
Sbjct: 273 QTVKIWDLRQVRGKASFLYSLP-HRHPVNAACFSPDGARLLTTDQKSEIRVYSASQ 327

>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein (Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna Repair Length = 435

Iteration: 1
 Score = 45.4 bits (106), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 45/96 (46%), Gaps = 13/96 (13%)
Query: 431 KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL----GKLLYS 486
           K + +LR H K++  +          NP     LA+AS D TVK+WD+         LYS
Sbjct: 241 KELWNLRMHKKKVTHV--------ALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYS 292
Query: 487 LNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKE 522
           L  HR PV +  FSP G  L +      + ++S  +
Sbjct: 293 LP-HRHPVNAACFSPDGARLLTTDQKSEIRVYSASQ 327

>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1 Length = 337

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 50/215 (23%), Positives = 88/215 (40%), Gaps = 20/215 (9%)
Query: 318 IFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGP----TLDVDWRNNVSFAT 373
           I S K    G  L+ G    T  +WD+     + + E  S       L +   + V F+ 
Sbjct: 100 IRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSC 159
Query: 374 SSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYV 433
            S D  I V  +     ++ F GH    +C+     G+ L +   D T + W++++ +  
Sbjct: 160 CS-DGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGR-- 216
Query: 434 HDLREH--SKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHR 491
             L++H  + +I+++ + PTG           LA     S V++  V      Y L+ H 
Sbjct: 217 -QLQQHDFTSQIFSLGYCPTGE---------WLAVGMESSNVEVLHVNKPD-KYQLHLHE 265
Query: 492 EPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIV 526
             V SL F+  G++  S   D  ++ W    G  +
Sbjct: 266 SCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASI 300

>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1 Length = 337

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/161 (21%), Positives = 63/161 (39%), Gaps = 11/161 (6%)
Query: 401 VNCVKWDPTGSLLASCSDDVTAKIWNMKQD--KYVHDLREHSKEIYTIRWSPTGSGTNNP 458
           +   K  P G  L    +  T  IW++     +   +L   +   Y +  SP        
Sbjct: 100 IRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSK----- 154
Query: 459 NQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIW 518
               +  S   D  + +WD+    L+    GH +    +  S  G  L +G LD ++  W
Sbjct: 155 ----VCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSW 210
Query: 519 SLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVL 559
            L+EG+ ++ +     IF + +   G+ +A    +  V VL
Sbjct: 211 DLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVL 251

>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE Copii Vesicular Coat Length = 416

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 54/272 (19%), Positives = 116/272 (42%), Gaps = 38/272 (13%)
Query: 280 LDWNGEGTLLATGSYDGQARIWSTNG-----DLKCTLSKHKGPIFSLKWNKKGDYLL-TG 333
           LDW+    ++A    +G   ++STN      +     S H   + ++K+N K D +L +G
Sbjct: 73  LDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASG 132
Query: 334 SCDKTAIVWDVK--TEEWKQQFEFHSGPTL-------DVDWRNNVS--FATSSTDNMIYV 382
             +    +WD+   TE          G ++        + W  +++  FA++ + N   +
Sbjct: 133 GNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASI 192
Query: 383 CKIGENRPIKTF------AGHQGEVNCVKWDPTGSLLASCS----DDVTAKIWNMKQ-DK 431
             +   + +         +G + +++ V+W P  S   + +    +D +  IW+++  + 
Sbjct: 193 WDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANT 252
Query: 432 YVHDLRE-HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGH 490
            +  L + H K I ++ W        + ++ L+L+S   D+TV LW+ E  + L      
Sbjct: 253 PLQTLNQGHQKGILSLDWC-------HQDEHLLLSSGR-DNTVLLWNPESAEQLSQFPAR 304
Query: 491 REPVYSLAFSPTG-EYLASGSLDKSMHIWSLK 521
               +   F+P   +  A  S D  + + +L+
Sbjct: 305 GNWCFKTKFAPEAPDLFACASFDNKIEVQTLQ 336

>pdb|3DWL|C Chain C, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking The Arp2 Subunit Length = 377

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 39/161 (24%), Positives = 67/161 (41%), Gaps = 24/161 (14%)
Query: 371 FATSSTDNMIYVCKIGEN--RPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMK 428
           F T++  N + + +   N  +  +TF+ H   V CV W P  + + +CS D  A ++  +
Sbjct: 26  FVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKR 85
Query: 429 QD---KYVHDLREHSKEIYTIRWSP------TGSGTNNPNQQLILASASFDSTVKLW-DV 478
            D   K    L   ++    +RWSP       GSG        +++   F+     W   
Sbjct: 86  PDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGAR------VISVCYFEQENDWWVSK 139
Query: 479 ELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWS 519
            L + L      R  + SL + P    LA+G  D+  ++ S
Sbjct: 140 HLKRPL------RSTILSLDWHPNNVLLAAGCADRKAYVLS 174

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	563
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
2xtc_A	90	F-box-like/WD repeat-containing protein TBL1X; tra	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.98
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.98
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.98
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.98
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.97
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.97
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.97
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.97
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.97
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.96
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.96
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.95
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.95
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.94
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.94
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.94
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.93
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.93
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.93
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.93
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.93
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.92
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.92
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.92
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.91
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.91
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.91
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.91
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.9
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.9
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.89
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.89
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.89
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.89
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.89
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.88
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.87
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.87
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.87
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.86
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.86
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.86
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.85
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.84
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.82
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.81
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.81
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.81
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.8
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.79
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.79
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.79
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.78
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.78
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.76
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.76
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.76
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.75
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.74
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.73
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.73
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.7
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.7
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.69
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.69
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.69
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.68
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.67
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.64
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.63
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.63
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.63
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.62
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.62
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.6
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.6
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.6
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.6
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.56
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.56
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.56
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.56
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.55
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.54
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.54
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.52
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.51
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.5
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.46
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.45
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.44
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.42
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.4
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.39
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.39
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.39
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.38
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.36
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.35
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.34
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.33
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.31
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.3
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.28
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.25
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.25
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.24
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.23
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.21
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.21
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.19
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.19
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.15
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.05
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.05
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.98
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.95
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.95
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.94
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.92
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.88
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.86
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.8
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.79
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.79
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.78
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.77
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.74
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.72
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.71
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.71
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.7
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.67
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.66
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.66
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.64
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.62
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.6
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	98.59
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.57
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.52
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.51
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.5
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.5
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.49
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.49
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.46
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.43
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.42
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.41
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.41
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.36
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.32
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.3
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.26
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.25
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.21
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	98.18
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.16
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	98.14
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.14
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.11
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.04
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.01
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.01
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.97
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	97.93
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.91
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.87
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.87
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.75
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.74
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.74
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.71
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	97.59
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	97.57
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	97.57
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.56
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	97.54
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	97.48
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	97.45
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	97.36
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.24
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.17
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.13
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	96.95
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	96.91
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	96.87
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	96.84
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	96.79
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	96.76
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	96.56
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	96.47
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	96.06
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	95.92
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	95.79
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	95.69
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	95.68
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	95.62
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	95.19
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	95.1
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	95.02
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	95.0
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	94.97
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	94.93
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	94.86
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	94.84
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	94.68
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	94.67
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	94.46
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	94.18
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	94.18
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	93.78
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	93.47
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	93.26
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	92.4
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	91.78
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	91.75
3ott_A	758	Two-component system sensor histidine kinase; beta	91.25
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	90.55
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	89.88
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	89.75
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	89.66
3ott_A	758	Two-component system sensor histidine kinase; beta	89.13
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	88.25
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	87.78
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	87.35
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	87.33
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	87.07
4hvt_A	711	Ritya.17583.B, post-proline cleaving enzyme; ssgci	86.03
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	85.64
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	85.21
1uuj_A	88	Platelet-activating factor acetylhydrolase IB ALP	84.37
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	83.26
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	82.7

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=8.4e-51  Score=415.10  Aligned_cols=297  Identities=29%  Similarity=0.500  Sum_probs=260.5

Q ss_pred             eeEecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCC
Q 008496          208 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT  287 (563)
Q Consensus       208 ~~~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~  287 (563)
                      ...+.+|..+|++++|+|++.+|++|+.|++|+|||+.++...             ..+    ..|...|++++|+|+|+
T Consensus       101 ~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~-------------~~l----~~h~~~V~~v~~~~~~~  163 (410)
T 1vyh_C          101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFE-------------RTL----KGHTDSVQDISFDHSGK  163 (410)
T ss_dssp             SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCC-------------EEE----CCCSSCEEEEEECTTSS
T ss_pred             eEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEE-------------EEE----eccCCcEEEEEEcCCCC
Confidence            3568899999999999999999999999999999999865421             111    23567899999999999


Q ss_pred             EEEEEeCCCeEEEEEcCC-ceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecC
Q 008496          288 LLATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR  366 (563)
Q Consensus       288 ~l~sg~~dg~i~vw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~  366 (563)
                      +|++|+.||.|++||..+ .....+.+|..+|.+++|+|++++|++|+.|++|++||++++.+.                
T Consensus       164 ~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~----------------  227 (410)
T 1vyh_C          164 LLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCV----------------  227 (410)
T ss_dssp             EEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEE----------------
T ss_pred             EEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEE----------------
Confidence            999999999999999865 566788999999999999999999999999999999999876432                


Q ss_pred             CCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEEE
Q 008496          367 NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTI  446 (563)
Q Consensus       367 ~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~  446 (563)
                                               ..+.+|...|.+++|+|++++|++|+.|++|++||+.++.+...+..|...|.++
T Consensus       228 -------------------------~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~  282 (410)
T 1vyh_C          228 -------------------------KTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECI  282 (410)
T ss_dssp             -------------------------EEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEE
T ss_pred             -------------------------EEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEE
Confidence                                     3456788899999999999999999999999999999999999999999999999


Q ss_pred             EEccCCCCCC-----------CCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcE
Q 008496          447 RWSPTGSGTN-----------NPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSM  515 (563)
Q Consensus       447 ~~~p~~~~~~-----------~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v  515 (563)
                      +|+|++....           ......+|++|+.|++|++||+++++++..+.+|..+|++++|+|+|++|++|+.||.|
T Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i  362 (410)
T 1vyh_C          283 SWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTL  362 (410)
T ss_dssp             EECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEE
T ss_pred             EEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeE
Confidence            9999642100           00012378999999999999999999999999999999999999999999999999999


Q ss_pred             EEEecCCCeeEEEEecC-CCEEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496          516 HIWSLKEGKIVKTYTGN-GGIFEVCWNKEGDKIAACFANHTVCVLDFR  562 (563)
Q Consensus       516 ~iw~~~~~~~~~~~~~~-~~i~~l~w~~~g~~la~~~~~~~v~v~~~~  562 (563)
                      ++||+.+++++.++.++ ..|.+++|+|++..||+|+.|++|.||++|
T Consensus       363 ~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~r  410 (410)
T 1vyh_C          363 RVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR  410 (410)
T ss_dssp             EEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred             EEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence            99999999988888764 469999999999999999999999999986

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=6.2e-46  Score=398.78  Aligned_cols=332  Identities=23%  Similarity=0.358  Sum_probs=280.2

Q ss_pred             CceeEecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCC
Q 008496          206 SDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE  285 (563)
Q Consensus       206 ~~~~~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~  285 (563)
                      ....+|.+|...|++++|+|+|++||+|+.|++|+|||+.++...           ....+    ..+...|.+++|+|+
T Consensus        50 ~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~-----------~~~~~----~~~~~~v~~v~fs~d  114 (611)
T 1nr0_A           50 TDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHI-----------LKTTI----PVFSGPVKDISWDSE  114 (611)
T ss_dssp             SCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCC-----------EEEEE----ECSSSCEEEEEECTT
T ss_pred             ccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcce-----------eeEee----cccCCceEEEEECCC
Confidence            345678999999999999999999999999999999998643210           01111    234578999999999


Q ss_pred             CCEEEEEeCC----CeEEEEEcCCceeEeeccCCCCEEEEEeCCCCC-EEEEeeCCCcEEEEECCCCceeEEeeecccCe
Q 008496          286 GTLLATGSYD----GQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGD-YLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPT  360 (563)
Q Consensus       286 g~~l~sg~~d----g~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~-~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~  360 (563)
                      |++|++++.+    +.|++|+. +.....+.+|..+|.+++|+|++. .|++|+.|++|++||..++++...+..|...+
T Consensus       115 g~~l~~~~~~~~~~~~v~~wd~-~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V  193 (611)
T 1nr0_A          115 SKRIAAVGEGRERFGHVFLFDT-GTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFV  193 (611)
T ss_dssp             SCEEEEEECCSSCSEEEEETTT-CCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCE
T ss_pred             CCEEEEEECCCCceeEEEEeeC-CCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCce
Confidence            9999999875    47999984 455567889999999999999987 59999999999999999999888999999999


Q ss_pred             EEEecCCC-ceEEEEeCCCeEEEEEcCCCcceeeec-------CCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCce
Q 008496          361 LDVDWRNN-VSFATSSTDNMIYVCKIGENRPIKTFA-------GHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKY  432 (563)
Q Consensus       361 ~~~~~~~~-~~~~~~~~d~~i~~~~~~~~~~~~~~~-------~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~  432 (563)
                      .++.|.++ ..+++++.|++|++|++..+..+..+.       +|.+.|.+++|+|++++|++|+.|++|++||+.+++.
T Consensus       194 ~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~  273 (611)
T 1nr0_A          194 HSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKV  273 (611)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE
T ss_pred             EEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCce
Confidence            99999765 567899999999999998888877774       7999999999999999999999999999999987665


Q ss_pred             ee-------------------------------------------eecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeC
Q 008496          433 VH-------------------------------------------DLREHSKEIYTIRWSPTGSGTNNPNQQLILASASF  469 (563)
Q Consensus       433 ~~-------------------------------------------~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~  469 (563)
                      +.                                           .+.+|...|++++|+|++.         +|++++.
T Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~---------~l~s~s~  344 (611)
T 1nr0_A          274 EKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGK---------TLFSADA  344 (611)
T ss_dssp             EEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS---------EEEEEET
T ss_pred             eeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCC---------EEEEEeC
Confidence            43                                           3357889999999999886         7899999


Q ss_pred             CCeEEEEeCCCCeEEEEe-c------------------------------------------------------------
Q 008496          470 DSTVKLWDVELGKLLYSL-N------------------------------------------------------------  488 (563)
Q Consensus       470 dg~i~iwd~~~~~~~~~~-~------------------------------------------------------------  488 (563)
                      |++|++||+.++++...+ .                                                            
T Consensus       345 D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~  424 (611)
T 1nr0_A          345 EGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGD  424 (611)
T ss_dssp             TSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSS
T ss_pred             CCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCc
Confidence            999999998766543221 0                                                            


Q ss_pred             ---------------------CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCee--EEEEecCCCEEEEEEcCCCC
Q 008496          489 ---------------------GHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKI--VKTYTGNGGIFEVCWNKEGD  545 (563)
Q Consensus       489 ---------------------~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~--~~~~~~~~~i~~l~w~~~g~  545 (563)
                                           .|...+.+++|||||++||+|+.|++|++|++.++.+  +........|.+++|+|+|+
T Consensus       425 ~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~  504 (611)
T 1nr0_A          425 IAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGA  504 (611)
T ss_dssp             CEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSS
T ss_pred             EEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeeccCCCCceEEEEECCCCC
Confidence                                 1234578899999999999999999999999987754  34444566799999999999


Q ss_pred             EEEEEECCCeEEEEEee
Q 008496          546 KIAACFANHTVCVLDFR  562 (563)
Q Consensus       546 ~la~~~~~~~v~v~~~~  562 (563)
                      +||+++.|++|.+||+.
T Consensus       505 ~las~s~d~~v~~w~~~  521 (611)
T 1nr0_A          505 FLVATDQSRKVIPYSVA  521 (611)
T ss_dssp             EEEEEETTSCEEEEEGG
T ss_pred             EEEEEcCCCCEEEEEcC
Confidence            99999999999999974

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.4e-46  Score=381.15  Aligned_cols=337  Identities=27%  Similarity=0.516  Sum_probs=292.7

Q ss_pred             cCCCCceEEEEECCCCC-EEEEeeCCCcEEEEec----CCCCCcCCCCCCCceEEEEEeee-c--ccccCCCCeEEEEEC
Q 008496          212 EGHTSEVCACAWSPAGS-LLASGSGDSTARIWTI----ADGTSNGGAQNGPLNVLVLKHVK-G--RTNEKSKDVTTLDWN  283 (563)
Q Consensus       212 ~~h~~~V~~~~~sp~~~-~latgs~D~~i~iW~~----~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~V~~l~~s  283 (563)
                      ..|.+.|++++|+|+++ +||+|+.|+.|++|++    .++.....    ......+.+.. .  ....+...|++++|+
T Consensus        42 ~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  117 (425)
T 1r5m_A           42 IVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWK----LTIIAELRHPFALSASSGKTTNQVTCLAWS  117 (425)
T ss_dssp             EEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEE----EEEEEEEECCCCCC------CBCEEEEEEC
T ss_pred             eeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCcccccc----ccccccccccccccccccCCCCceEEEEEc
Confidence            34669999999999999 9999999999999999    65431000    00011111100 0  011235689999999


Q ss_pred             CCCCEEEEEeCCCeEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccC----
Q 008496          284 GEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGP----  359 (563)
Q Consensus       284 ~~g~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~----  359 (563)
                      |++++|++|+.||.|++|+..+.....+..|..+|.+++|+|++++|++++.|+.|++||+.+++....+..+...    
T Consensus       118 ~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  197 (425)
T 1r5m_A          118 HDGNSIVTGVENGELRLWNKTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSI  197 (425)
T ss_dssp             TTSSEEEEEETTSCEEEEETTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC-------
T ss_pred             CCCCEEEEEeCCCeEEEEeCCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccce
Confidence            9999999999999999999888888899999999999999999999999999999999999999988888777665    


Q ss_pred             -----------eEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCC
Q 008496          360 -----------TLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMK  428 (563)
Q Consensus       360 -----------~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~  428 (563)
                                 +..+.|.++..+++++.++.|++|++....++..+.+|...|.+++|+|++++|++++.|+.|++||+.
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~  277 (425)
T 1r5m_A          198 NAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGG  277 (425)
T ss_dssp             --------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSS
T ss_pred             eeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECC
Confidence                       778888888889999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEE
Q 008496          429 QDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLAS  508 (563)
Q Consensus       429 ~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~las  508 (563)
                      +++.+..+..|...|.+++|+|++          ++++++.||.|++||+++++.+..+..|..+|.+++|+|++++|++
T Consensus       278 ~~~~~~~~~~~~~~i~~~~~~~~~----------~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~  347 (425)
T 1r5m_A          278 NGNSQNCFYGHSQSIVSASWVGDD----------KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAV  347 (425)
T ss_dssp             SBSCSEEECCCSSCEEEEEEETTT----------EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEE
T ss_pred             CCccceEecCCCccEEEEEECCCC----------EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEE
Confidence            999888899999999999999975          5889999999999999999999999999999999999999999999


Q ss_pred             EeCCCcEEEEecCCCe--------------------eEEEEecC--C-CEEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496          509 GSLDKSMHIWSLKEGK--------------------IVKTYTGN--G-GIFEVCWNKEGDKIAACFANHTVCVLDFR  562 (563)
Q Consensus       509 gs~dg~v~iw~~~~~~--------------------~~~~~~~~--~-~i~~l~w~~~g~~la~~~~~~~v~v~~~~  562 (563)
                      |+.||.|++|++.+++                    ++..+..+  + .|.+++|+|+|++||+++.||.|.|||++
T Consensus       348 ~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~  424 (425)
T 1r5m_A          348 AFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIP  424 (425)
T ss_dssp             EETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred             EECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEeec
Confidence            9999999999999888                    88888776  5 89999999999999999999999999985

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=4.6e-45  Score=392.00  Aligned_cols=335  Identities=19%  Similarity=0.327  Sum_probs=271.8

Q ss_pred             eeEecCCCCceEEEEECCCCC-EEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCC
Q 008496          208 VTILEGHTSEVCACAWSPAGS-LLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG  286 (563)
Q Consensus       208 ~~~l~~h~~~V~~~~~sp~~~-~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g  286 (563)
                      ...+.+|...|++++|+|++. +|++|+.|++|++|+..++.             ....+    ..|...|++++|+|+|
T Consensus       140 ~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~-------------~~~~l----~~H~~~V~~v~fspdg  202 (611)
T 1nr0_A          140 NGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFK-------------FKSTF----GEHTKFVHSVRYNPDG  202 (611)
T ss_dssp             CBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBE-------------EEEEE----CCCSSCEEEEEECTTS
T ss_pred             cceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCe-------------Eeeee----ccccCceEEEEECCCC
Confidence            346789999999999999986 69999999999999975422             11122    2456789999999999


Q ss_pred             CEEEEEeCCCeEEEEEcC-CceeEeec-------cCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeec--
Q 008496          287 TLLATGSYDGQARIWSTN-GDLKCTLS-------KHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFH--  356 (563)
Q Consensus       287 ~~l~sg~~dg~i~vw~~~-~~~~~~~~-------~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~--  356 (563)
                      ++|++|+.||.|++|+.. +.....+.       +|.++|++++|+|++++|++++.|++|++||+.++++...+..+  
T Consensus       203 ~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~  282 (611)
T 1nr0_A          203 SLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTR  282 (611)
T ss_dssp             SEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSS
T ss_pred             CEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCC
Confidence            999999999999999964 55555553       79999999999999999999999999999999999888777543  


Q ss_pred             -ccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeee
Q 008496          357 -SGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHD  435 (563)
Q Consensus       357 -~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~  435 (563)
                       ......+.| ....+++++.|+.+++|+.....+...+.+|...|++++|+|++++|++++.|++|++||+.++.....
T Consensus       283 ~~~~~~~~~~-~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~  361 (611)
T 1nr0_A          283 IEDQQLGIIW-TKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRV  361 (611)
T ss_dssp             GGGCEEEEEE-CSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEC
T ss_pred             ccceeEEEEE-cCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeee
Confidence             234556667 556788999999999999988888888999999999999999999999999999999999987765443


Q ss_pred             e-cccCCCEEEEEEccCCCC------------------------------------------------------------
Q 008496          436 L-REHSKEIYTIRWSPTGSG------------------------------------------------------------  454 (563)
Q Consensus       436 ~-~~~~~~i~~~~~~p~~~~------------------------------------------------------------  454 (563)
                      + ..|...|.+++|++++..                                                            
T Consensus       362 ~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~  441 (611)
T 1nr0_A          362 FPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGK  441 (611)
T ss_dssp             SSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTE
T ss_pred             cccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCc
Confidence            3 234444444333321100                                                            


Q ss_pred             -------------CCCCCCcEEEEEEeCCCeEEEEeCCCCeE--EEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 008496          455 -------------TNNPNQQLILASASFDSTVKLWDVELGKL--LYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWS  519 (563)
Q Consensus       455 -------------~~~~~~~~~l~s~s~dg~i~iwd~~~~~~--~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~  519 (563)
                                   ...|++ .+|++|+.|++|++||+..+..  +.. .+|...|++++|||||++||+++.|++|++|+
T Consensus       442 ~~~~~~~~~v~~va~spdg-~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~  519 (611)
T 1nr0_A          442 LTEVPISYNSSCVALSNDK-QFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYS  519 (611)
T ss_dssp             EEEEECSSCEEEEEECTTS-CEEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             eeeeecCCCceEEEEeCCC-CEEEEeCCCCeEEEEEccCCceeeeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEE
Confidence                         001222 2789999999999999987654  334 67999999999999999999999999999999


Q ss_pred             cCC-CeeEEE--Ee-cCCCEEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496          520 LKE-GKIVKT--YT-GNGGIFEVCWNKEGDKIAACFANHTVCVLDFR  562 (563)
Q Consensus       520 ~~~-~~~~~~--~~-~~~~i~~l~w~~~g~~la~~~~~~~v~v~~~~  562 (563)
                      +.+ ++++..  +. +...|.+++|+|||++||+|+.|++|+|||+.
T Consensus       520 ~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~  566 (611)
T 1nr0_A          520 VANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMN  566 (611)
T ss_dssp             GGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred             cCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECC
Confidence            987 665443  23 45679999999999999999999999999974

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=5.1e-45  Score=359.46  Aligned_cols=289  Identities=19%  Similarity=0.382  Sum_probs=259.5

Q ss_pred             eEecCCCCceEEEEECCC----CCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECC
Q 008496          209 TILEGHTSEVCACAWSPA----GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG  284 (563)
Q Consensus       209 ~~l~~h~~~V~~~~~sp~----~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~  284 (563)
                      ..+.+|.+.|++++|+|+    +.+|+||+.|++|+||++..+..           .....+    ..+...|++++|++
T Consensus        26 ~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~-----------~~~~~l----~gh~~~v~~~~~~~   90 (321)
T 3ow8_A           26 KQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERL-----------DLQWSL----EGHQLGVVSVDISH   90 (321)
T ss_dssp             EETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEE-----------EEEEEE----CCCSSCEEEEEECS
T ss_pred             eecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCe-----------eeeeee----ccCCCCEEEEEECC
Confidence            456799999999999985    56999999999999999864321           111112    34567899999999


Q ss_pred             CCCEEEEEeCCCeEEEEEcC-CceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEE
Q 008496          285 EGTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDV  363 (563)
Q Consensus       285 ~g~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~  363 (563)
                      ++.++++|+.|+.|++||.. +.....+..|...+.+++|+|++++|++|+.|++|++||+.++.....+..+...+..+
T Consensus        91 ~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~  170 (321)
T 3ow8_A           91 TLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSI  170 (321)
T ss_dssp             SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEE
T ss_pred             CCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEE
Confidence            99999999999999999975 55667788899999999999999999999999999999999999888888888889999


Q ss_pred             ecCCC-ceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccCCC
Q 008496          364 DWRNN-VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKE  442 (563)
Q Consensus       364 ~~~~~-~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~  442 (563)
                      .|.++ ..+++++.|+.|++|++.+.+++..+.+|...|.+++|+|++++|++|+.|++|++||+++...+..+.+|...
T Consensus       171 ~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~  250 (321)
T 3ow8_A          171 AYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASW  250 (321)
T ss_dssp             EECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSC
T ss_pred             EECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCc
Confidence            99765 56788999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q 008496          443 IYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLK  521 (563)
Q Consensus       443 i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~  521 (563)
                      |.+++|+|++.         +|++|+.|++|+|||+.+++++..+.+|..+|++++|+|+|++|++++.||.|+|||..
T Consensus       251 v~~~~~sp~~~---------~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p  320 (321)
T 3ow8_A          251 VLNVAFCPDDT---------HFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP  320 (321)
T ss_dssp             EEEEEECTTSS---------EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred             eEEEEECCCCC---------EEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence            99999999875         79999999999999999999999999999999999999999999999999999999963

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=1.2e-44  Score=360.23  Aligned_cols=286  Identities=24%  Similarity=0.414  Sum_probs=256.2

Q ss_pred             ceeEecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCC
Q 008496          207 DVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG  286 (563)
Q Consensus       207 ~~~~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g  286 (563)
                      ....|++|...|++++|+|++++|++|+.|++|+|||+.++..             +...    ..+...|.+++|+|+|
T Consensus        47 ~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~-------------~~~~----~~~~~~v~~~~~s~~~  109 (340)
T 1got_B           47 TRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNK-------------VHAI----PLRSSWVMTCAYAPSG  109 (340)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCE-------------EEEE----ECSSSCEEEEEECTTS
T ss_pred             hheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCc-------------ceEe----ecCCccEEEEEECCCC
Confidence            4568999999999999999999999999999999999876431             1111    1245679999999999


Q ss_pred             CEEEEEeCCCeEEEEEcCC-----ceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeE
Q 008496          287 TLLATGSYDGQARIWSTNG-----DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTL  361 (563)
Q Consensus       287 ~~l~sg~~dg~i~vw~~~~-----~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~  361 (563)
                      ++|++|+.|+.+++|+...     .....+.+|.+.|.++.|++++ .+++++.|++|++||+.++.....+..|...+.
T Consensus       110 ~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~  188 (340)
T 1got_B          110 NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN-QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVM  188 (340)
T ss_dssp             SEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEE
T ss_pred             CEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCC-cEEEEECCCcEEEEECCCCcEEEEEcCCCCceE
Confidence            9999999999999999754     2445688999999999999876 489999999999999999999999999999999


Q ss_pred             EEecCCC-ceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecc--
Q 008496          362 DVDWRNN-VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLRE--  438 (563)
Q Consensus       362 ~~~~~~~-~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~--  438 (563)
                      ++.|.++ ..+++++.|+.|++|++....++..+.+|...|++++|+|++++|++|+.|++|++||++++..+..+..  
T Consensus       189 ~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~  268 (340)
T 1got_B          189 SLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDN  268 (340)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTT
T ss_pred             EEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCC
Confidence            9999765 4678999999999999999999999999999999999999999999999999999999999887766542  


Q ss_pred             cCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 008496          439 HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIW  518 (563)
Q Consensus       439 ~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw  518 (563)
                      +...|.+++|+|++.         +|++|+.||.|++||+.+++.+..+.+|..+|++++|+|+|.+||+|+.||.|+||
T Consensus       269 ~~~~v~~~~~s~~g~---------~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iW  339 (340)
T 1got_B          269 IICGITSVSFSKSGR---------LLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW  339 (340)
T ss_dssp             CCSCEEEEEECTTSS---------EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEE
T ss_pred             cccceEEEEECCCCC---------EEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEec
Confidence            335799999999886         79999999999999999999999999999999999999999999999999999999


Q ss_pred             e
Q 008496          519 S  519 (563)
Q Consensus       519 ~  519 (563)
                      |
T Consensus       340 d  340 (340)
T 1got_B          340 N  340 (340)
T ss_dssp             C
T ss_pred             C
Confidence            6

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=3.3e-44  Score=383.18  Aligned_cols=325  Identities=30%  Similarity=0.549  Sum_probs=290.3

Q ss_pred             CCCceeEecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEEC
Q 008496          204 PNSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWN  283 (563)
Q Consensus       204 ~~~~~~~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s  283 (563)
                      ....+..+.+|...|.+++|+|++++|++++.|+.+++|+....              .+..+    ..+...|++++|+
T Consensus       251 ~~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~~--------------~~~~~----~~h~~~v~~~~~~  312 (577)
T 2ymu_A          251 NGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQ--------------LLQTL----TGHSSSVWGVAFS  312 (577)
T ss_dssp             TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSC--------------EEEEE----CCCSSCEEEEEEC
T ss_pred             CCCEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCCc--------------EEEEE----ecCCCCeEEEEEC
Confidence            33456678899999999999999999999999999999996421              11112    2346789999999


Q ss_pred             CCCCEEEEEeCCCeEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEE
Q 008496          284 GEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDV  363 (563)
Q Consensus       284 ~~g~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~  363 (563)
                      |++.+|++++.||.|++|+.++.....+.+|..+|.+++|+|++++|++++.|+++++||. +++....+..|..++.++
T Consensus       313 ~~~~~l~t~~~d~~i~~w~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~  391 (577)
T 2ymu_A          313 PDGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGV  391 (577)
T ss_dssp             TTSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEE
T ss_pred             CCCCEEEEEeCCCeEEEEeCCCCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEE
Confidence            9999999999999999999998888889999999999999999999999999999999995 567778888899999999


Q ss_pred             ecCCC-ceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccCCC
Q 008496          364 DWRNN-VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKE  442 (563)
Q Consensus       364 ~~~~~-~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~  442 (563)
                      .|.++ ..+++++.|+.|++|+. ..+.+..+.+|...|.+++|+|++++|++++.|++|++||. +++.+..+..|...
T Consensus       392 ~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~  469 (577)
T 2ymu_A          392 AFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSS  469 (577)
T ss_dssp             EECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEEECCSSC
T ss_pred             EECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCC
Confidence            98754 56788999999999996 45677889999999999999999999999999999999996 45677888999999


Q ss_pred             EEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCC
Q 008496          443 IYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKE  522 (563)
Q Consensus       443 i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~  522 (563)
                      |.+++|+|++.         +|++++.|++|++||. +++++..+.+|..+|++++|+|||++||+|+.||.|+|||. +
T Consensus       470 v~~~~~spd~~---------~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~  538 (577)
T 2ymu_A          470 VRGVAFSPDGQ---------TIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-N  538 (577)
T ss_dssp             EEEEEECTTSC---------EEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-T
T ss_pred             EEEEEEcCCCC---------EEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-C
Confidence            99999999886         7999999999999995 68889999999999999999999999999999999999996 6


Q ss_pred             CeeEEEEecC-CCEEEEEEcCCCCEEEEEECCCeEEEEE
Q 008496          523 GKIVKTYTGN-GGIFEVCWNKEGDKIAACFANHTVCVLD  560 (563)
Q Consensus       523 ~~~~~~~~~~-~~i~~l~w~~~g~~la~~~~~~~v~v~~  560 (563)
                      ++++.++.++ +.|.+++|+|||++|++++.|++|.|||
T Consensus       539 ~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd  577 (577)
T 2ymu_A          539 GQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN  577 (577)
T ss_dssp             SCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             CCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence            7888888764 5799999999999999999999999997

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=1.2e-44  Score=362.08  Aligned_cols=288  Identities=24%  Similarity=0.418  Sum_probs=256.4

Q ss_pred             CceeEecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCC
Q 008496          206 SDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE  285 (563)
Q Consensus       206 ~~~~~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~  285 (563)
                      .....|.+|...|++++|+|++++||||+.|++|+|||..++...             ...    ..+...|.+++|+|+
T Consensus        55 ~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~-------------~~~----~~~~~~v~~~~~sp~  117 (354)
T 2pbi_B           55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKE-------------HAV----TMPCTWVMACAYAPS  117 (354)
T ss_dssp             CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE-------------EEE----ECSSSCCCEEEECTT
T ss_pred             EEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcc-------------eEE----ecCCCCEEEEEECCC
Confidence            345788999999999999999999999999999999997654310             111    123467999999999


Q ss_pred             CCEEEEEeCCCeEEEEEcCC-------ceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeeccc
Q 008496          286 GTLLATGSYDGQARIWSTNG-------DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSG  358 (563)
Q Consensus       286 g~~l~sg~~dg~i~vw~~~~-------~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~  358 (563)
                      |.+|++|+.|+.+++|+...       .....+..|...|.++.|+|++..|++++.|++|++||+++++....+..|..
T Consensus       118 g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~  197 (354)
T 2pbi_B          118 GCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGA  197 (354)
T ss_dssp             SSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSS
T ss_pred             CCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCC
Confidence            99999999999999998642       23456778999999999999999999999999999999999999999999999


Q ss_pred             CeEEEecCC---CceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeee
Q 008496          359 PTLDVDWRN---NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHD  435 (563)
Q Consensus       359 ~~~~~~~~~---~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~  435 (563)
                      .+..+.+..   ...+++++.|+.|++|++...+++..+.+|...|++++|+|++.+|++|+.|++|++||++..+.+..
T Consensus       198 ~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~  277 (354)
T 2pbi_B          198 DVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAI  277 (354)
T ss_dssp             CEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE
T ss_pred             CeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEE
Confidence            998888754   36899999999999999999999999999999999999999999999999999999999998877665


Q ss_pred             eccc--CCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCC
Q 008496          436 LREH--SKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDK  513 (563)
Q Consensus       436 ~~~~--~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg  513 (563)
                      +..+  ...+.+++|+|++.         +|++|+.|++|++||+.+++.+..+.+|..+|++++|+|||++||+|+.||
T Consensus       278 ~~~~~~~~~~~~~~~s~~g~---------~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~  348 (354)
T 2pbi_B          278 YSKESIIFGASSVDFSLSGR---------LLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDH  348 (354)
T ss_dssp             ECCTTCCSCEEEEEECTTSS---------EEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTS
T ss_pred             EcCCCcccceeEEEEeCCCC---------EEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCC
Confidence            5433  34789999999885         799999999999999999999999999999999999999999999999999


Q ss_pred             cEEEEe
Q 008496          514 SMHIWS  519 (563)
Q Consensus       514 ~v~iw~  519 (563)
                      +|+||+
T Consensus       349 ~v~vW~  354 (354)
T 2pbi_B          349 TLRVWA  354 (354)
T ss_dssp             EEEEEC
T ss_pred             CEEecC
Confidence            999996

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=1.5e-44  Score=353.60  Aligned_cols=290  Identities=23%  Similarity=0.353  Sum_probs=249.3

Q ss_pred             eeEecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCC
Q 008496          208 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT  287 (563)
Q Consensus       208 ~~~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~  287 (563)
                      ..+|.+|.+.|++++|+|++++||+|+.||+|++||+.++..             +..+.    .+..+|.+++|+|+++
T Consensus         6 ~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~-------------~~~~~----~~~~~v~~~~~~~~~~   68 (304)
T 2ynn_A            6 KKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVE-------------VRSIQ----VTETPVRAGKFIARKN   68 (304)
T ss_dssp             EEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEE-------------EEEEE----CCSSCEEEEEEEGGGT
T ss_pred             EEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCce-------------eEEee----ccCCcEEEEEEeCCCC
Confidence            467899999999999999999999999999999999876431             11221    2456799999999999


Q ss_pred             EEEEEeCCCeEEEEEcC-CceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecC
Q 008496          288 LLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR  366 (563)
Q Consensus       288 ~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~  366 (563)
                      +|++|+.|+.|++|+.. +.....+.+|...|.+++|+|++++|++|+.|++|++||++++..                 
T Consensus        69 ~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~-----------------  131 (304)
T 2ynn_A           69 WIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWA-----------------  131 (304)
T ss_dssp             EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTE-----------------
T ss_pred             EEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcc-----------------
Confidence            99999999999999975 567778999999999999999999999999999999999875421                 


Q ss_pred             CCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECC-CCCEEEEEeCCCcEEEEeCCCCceeeeec-ccCCCEE
Q 008496          367 NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDP-TGSLLASCSDDVTAKIWNMKQDKYVHDLR-EHSKEIY  444 (563)
Q Consensus       367 ~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~-~~~~las~s~dg~i~iwd~~~~~~~~~~~-~~~~~i~  444 (563)
                                             ....+.+|...|.+++|+| ++.+|++|+.|++|++||+++......+. .|...+.
T Consensus       132 -----------------------~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~  188 (304)
T 2ynn_A          132 -----------------------LEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVN  188 (304)
T ss_dssp             -----------------------EEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEE
T ss_pred             -----------------------hhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEE
Confidence                                   1235678999999999999 67899999999999999998777655554 4567899


Q ss_pred             EEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCe
Q 008496          445 TIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGK  524 (563)
Q Consensus       445 ~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~  524 (563)
                      .+.|+|....       .+|++|+.|++|++||+++++++..+.+|..+|.+++|+|++++|++|+.||+|+|||+.+++
T Consensus       189 ~~~~~~~~~~-------~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~  261 (304)
T 2ynn_A          189 YVDYYPLPDK-------PYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYK  261 (304)
T ss_dssp             EEEECCSTTC-------CEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCC
T ss_pred             EEEEEEcCCC-------CEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCc
Confidence            9999885321       279999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEecC-CCEEEEEEcCCCC--EEEEEECCCeEEEEEee
Q 008496          525 IVKTYTGN-GGIFEVCWNKEGD--KIAACFANHTVCVLDFR  562 (563)
Q Consensus       525 ~~~~~~~~-~~i~~l~w~~~g~--~la~~~~~~~v~v~~~~  562 (563)
                      +++++..+ ..+.+++|+|+|.  .||+|+.|| +.+|++.
T Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g-~~~~~~~  301 (304)
T 2ynn_A          262 VEKTLNVGLERSWCIATHPTGRKNYIASGFDNG-FTVLSLG  301 (304)
T ss_dssp             EEEEECCSSSSEEEEEECTTCGGGCEEEEETTE-EEEEECC
T ss_pred             eeeeccCCCccEEEEEECCCCCceEEEEecCCc-eEEEEec
Confidence            99998764 5789999999985  577777664 6677653

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=4.7e-44  Score=352.57  Aligned_cols=282  Identities=21%  Similarity=0.376  Sum_probs=259.0

Q ss_pred             cCCCCeEEEEECCC----CCEEEEEeCCCeEEEEEcCCc---eeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEEC
Q 008496          272 EKSKDVTTLDWNGE----GTLLATGSYDGQARIWSTNGD---LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDV  344 (563)
Q Consensus       272 ~~~~~V~~l~~s~~----g~~l~sg~~dg~i~vw~~~~~---~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~  344 (563)
                      .|...|++++|+|+    +.+|++|+.|+.|+||+....   ....+.+|..+|.+++|++++..+++++.|++|++||+
T Consensus        30 ~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~  109 (321)
T 3ow8_A           30 AHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDL  109 (321)
T ss_dssp             SSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEET
T ss_pred             cCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEEC
Confidence            46788999999984    679999999999999997543   33468899999999999999999999999999999999


Q ss_pred             CCCceeEEeeecccCeEEEecCCC-ceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEE
Q 008496          345 KTEEWKQQFEFHSGPTLDVDWRNN-VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAK  423 (563)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~  423 (563)
                      .+++....+..+...+..+.|.++ ..+++++.++.|++|++...+....+..|...|.+++|+|++++||+|+.|+.|+
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~  189 (321)
T 3ow8_A          110 ENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIIN  189 (321)
T ss_dssp             TTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             CCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEE
Confidence            999998888888888888888655 5678889999999999999998889999999999999999999999999999999


Q ss_pred             EEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCC
Q 008496          424 IWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTG  503 (563)
Q Consensus       424 iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg  503 (563)
                      +||+.+++.+..+.+|...|.+++|+|++.         +|++|+.|++|+|||++.++++..+.+|..+|.+++|+|++
T Consensus       190 iwd~~~~~~~~~~~~h~~~v~~l~~spd~~---------~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~  260 (321)
T 3ow8_A          190 IFDIATGKLLHTLEGHAMPIRSLTFSPDSQ---------LLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDD  260 (321)
T ss_dssp             EEETTTTEEEEEECCCSSCCCEEEECTTSC---------EEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTS
T ss_pred             EEECCCCcEEEEEcccCCceeEEEEcCCCC---------EEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCC
Confidence            999999999999999999999999999875         79999999999999999999999999999999999999999


Q ss_pred             CEEEEEeCCCcEEEEecCCCeeEEEEecC-CCEEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496          504 EYLASGSLDKSMHIWSLKEGKIVKTYTGN-GGIFEVCWNKEGDKIAACFANHTVCVLDFR  562 (563)
Q Consensus       504 ~~lasgs~dg~v~iw~~~~~~~~~~~~~~-~~i~~l~w~~~g~~la~~~~~~~v~v~~~~  562 (563)
                      ++|++|+.|++|+|||+.+++++.++.++ ..|.+++|+|+|++|++++.|+.|.|||+.
T Consensus       261 ~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p  320 (321)
T 3ow8_A          261 THFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP  320 (321)
T ss_dssp             SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred             CEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence            99999999999999999999999998654 579999999999999999999999999974

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=1.6e-43  Score=351.92  Aligned_cols=280  Identities=21%  Similarity=0.371  Sum_probs=257.1

Q ss_pred             cCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcC-CceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCc--
Q 008496          272 EKSKDVTTLDWNGEGTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEE--  348 (563)
Q Consensus       272 ~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~--  348 (563)
                      .|...|++++|+|++++|++|+.||.|++|+.. +.....+..|...|.+++|+|++++|++|+.|+.+++||+.+..  
T Consensus        53 gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~  132 (340)
T 1got_B           53 GHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGN  132 (340)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBS
T ss_pred             CCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCc
Confidence            346789999999999999999999999999965 56667888999999999999999999999999999999997653  


Q ss_pred             --eeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEe
Q 008496          349 --WKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWN  426 (563)
Q Consensus       349 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd  426 (563)
                        ....+..|...+.++.|.++..+++++.|+.|++|++.+..++..+.+|.+.|.+++|+|++++|++|+.|++|++||
T Consensus       133 ~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd  212 (340)
T 1got_B          133 VRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWD  212 (340)
T ss_dssp             CEEEEEEECCSSCEEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             ceeEEEecCCCccEEEEEECCCCcEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEE
Confidence              455677888899999998888899999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecC--CCCCEEEEEEcCCCC
Q 008496          427 MKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNG--HREPVYSLAFSPTGE  504 (563)
Q Consensus       427 ~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~--h~~~i~~l~~spdg~  504 (563)
                      ++++.++..+.+|...|.+++|+|++.         +|++|+.||+|++||++.++.+..+..  +...|++++|+|+|+
T Consensus       213 ~~~~~~~~~~~~h~~~v~~v~~~p~~~---------~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~  283 (340)
T 1got_B          213 VREGMCRQTFTGHESDINAICFFPNGN---------AFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGR  283 (340)
T ss_dssp             TTTCSEEEEECCCSSCEEEEEECTTSS---------EEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSS
T ss_pred             CCCCeeEEEEcCCcCCEEEEEEcCCCC---------EEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCC
Confidence            999999999999999999999999875         799999999999999999988877653  335799999999999


Q ss_pred             EEEEEeCCCcEEEEecCCCeeEEEEecC-CCEEEEEEcCCCCEEEEEECCCeEEEEE
Q 008496          505 YLASGSLDKSMHIWSLKEGKIVKTYTGN-GGIFEVCWNKEGDKIAACFANHTVCVLD  560 (563)
Q Consensus       505 ~lasgs~dg~v~iw~~~~~~~~~~~~~~-~~i~~l~w~~~g~~la~~~~~~~v~v~~  560 (563)
                      +|++|+.||.|++||+.+++.+..+.++ ..|.+++|+|+|+.||+|+.|+.|.|||
T Consensus       284 ~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          284 LLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             EEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence            9999999999999999999988888764 5799999999999999999999999997

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=2.2e-43  Score=347.76  Aligned_cols=289  Identities=27%  Similarity=0.469  Sum_probs=248.8

Q ss_pred             eEecCCCCceEEEEECCCC-CEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCC
Q 008496          209 TILEGHTSEVCACAWSPAG-SLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT  287 (563)
Q Consensus       209 ~~l~~h~~~V~~~~~sp~~-~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~  287 (563)
                      .+|.+|.+.|++++|+|++ ++|+||+.|++|++|++......        ....+..+    ..|...|++++|+|+|+
T Consensus        11 ~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~--------~~~~~~~~----~~h~~~v~~~~~s~dg~   78 (319)
T 3frx_A           11 GTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQK--------FGVPVRSF----KGHSHIVQDCTLTADGA   78 (319)
T ss_dssp             EEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTE--------EEEEEEEE----ECCSSCEEEEEECTTSS
T ss_pred             EEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCcc--------ccccceEE----eCCcccEEEEEECCCCC
Confidence            4689999999999999975 89999999999999998532110        01112222    24567899999999999


Q ss_pred             EEEEEeCCCeEEEEEcC-CceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecC
Q 008496          288 LLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR  366 (563)
Q Consensus       288 ~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~  366 (563)
                      +|++|+.||.|++||.. +.....+.+|..+|.+++|+|++.+|++|+.|++|++||++..                   
T Consensus        79 ~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~-------------------  139 (319)
T 3frx_A           79 YALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQ-------------------  139 (319)
T ss_dssp             EEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSC-------------------
T ss_pred             EEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-------------------
Confidence            99999999999999975 5667788999999999999999999999999999999998532                   


Q ss_pred             CCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCC------CCEEEEEeCCCcEEEEeCCCCceeeeecccC
Q 008496          367 NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT------GSLLASCSDDVTAKIWNMKQDKYVHDLREHS  440 (563)
Q Consensus       367 ~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~------~~~las~s~dg~i~iwd~~~~~~~~~~~~~~  440 (563)
                                             .+..+.+|...|.+++|+|.      +.+|++++.|++|++||+++.+....+.+|.
T Consensus       140 -----------------------~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~  196 (319)
T 3frx_A          140 -----------------------CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHN  196 (319)
T ss_dssp             -----------------------EEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCC
T ss_pred             -----------------------eEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCC
Confidence                                   12345678888999999885      4589999999999999999999988999999


Q ss_pred             CCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEec
Q 008496          441 KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSL  520 (563)
Q Consensus       441 ~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~  520 (563)
                      ..|.+++|+|++.         +|++|+.||+|+|||+.+++++..+..+ .+|.+++|+|++.+|++++.++ +++|++
T Consensus       197 ~~v~~~~~sp~g~---------~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~sp~~~~la~~~~~~-i~v~~~  265 (319)
T 3frx_A          197 SNINTLTASPDGT---------LIASAGKDGEIMLWNLAAKKAMYTLSAQ-DEVFSLAFSPNRYWLAAATATG-IKVFSL  265 (319)
T ss_dssp             SCEEEEEECTTSS---------EEEEEETTCEEEEEETTTTEEEEEEECC-SCEEEEEECSSSSEEEEEETTE-EEEEEE
T ss_pred             CcEEEEEEcCCCC---------EEEEEeCCCeEEEEECCCCcEEEEecCC-CcEEEEEEcCCCCEEEEEcCCC-cEEEEe
Confidence            9999999999886         7999999999999999999999998855 6899999999999999988665 999999


Q ss_pred             CCCeeEEEEec---------CCCEEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496          521 KEGKIVKTYTG---------NGGIFEVCWNKEGDKIAACFANHTVCVLDFR  562 (563)
Q Consensus       521 ~~~~~~~~~~~---------~~~i~~l~w~~~g~~la~~~~~~~v~v~~~~  562 (563)
                      ..+.++..+..         ...+.+++|+|||++|++|+.|+.|.|||+.
T Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~  316 (319)
T 3frx_A          266 DPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVM  316 (319)
T ss_dssp             TTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEE
T ss_pred             CcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEe
Confidence            98887777642         3458899999999999999999999999985

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=3.2e-44  Score=356.64  Aligned_cols=293  Identities=20%  Similarity=0.302  Sum_probs=234.5

Q ss_pred             CCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEE
Q 008496          213 GHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATG  292 (563)
Q Consensus       213 ~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg  292 (563)
                      .|...|.+++|+|||++|++++ |+++|+|+........ ....+...     .......+...|++++|+|++ .|++|
T Consensus        28 ~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~-~~~~~~~~-----~~~~~~~~~~~v~~~~~s~d~-~l~~~   99 (344)
T 4gqb_B           28 CMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKD-PCAAPNEG-----FCSAGVQTEAGVADLTWVGER-GILVA   99 (344)
T ss_dssp             SCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESS-GGGTTCGG-----GCSEEEEESSCEEEEEEETTT-EEEEE
T ss_pred             cccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeecc-ccccCCcc-----eeeeeeccCCCEEEEEEeCCC-eEEEE
Confidence            4667899999999999999887 8889999732100000 00000000     000001123569999999985 68899


Q ss_pred             eCCCeEEEEEcCC-ce----eEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecCC
Q 008496          293 SYDGQARIWSTNG-DL----KCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN  367 (563)
Q Consensus       293 ~~dg~i~vw~~~~-~~----~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~  367 (563)
                      +.||.|+|||... +.    ...+.+|.+.|++++|+|+|++|++|+.|++|++||+.+++.                  
T Consensus       100 s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~------------------  161 (344)
T 4gqb_B          100 SDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVV------------------  161 (344)
T ss_dssp             ETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE------------------
T ss_pred             ECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcE------------------
Confidence            9999999999763 32    234568999999999999999999999999999999987643                  


Q ss_pred             CceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCC-EEEEEeCCCcEEEEeCCCCceeeeec--ccCCCEE
Q 008496          368 NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGS-LLASCSDDVTAKIWNMKQDKYVHDLR--EHSKEIY  444 (563)
Q Consensus       368 ~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~-~las~s~dg~i~iwd~~~~~~~~~~~--~~~~~i~  444 (563)
                                             +..+.+|.+.|.+++|+|++. +|++|+.|++|++||+++++....+.  .|...+.
T Consensus       162 -----------------------~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~  218 (344)
T 4gqb_B          162 -----------------------LSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPT  218 (344)
T ss_dssp             -----------------------EEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEE
T ss_pred             -----------------------EEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccce
Confidence                                   345678999999999999984 78999999999999999998887764  4556799


Q ss_pred             EEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEecCCC
Q 008496          445 TIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTG-EYLASGSLDKSMHIWSLKEG  523 (563)
Q Consensus       445 ~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg-~~lasgs~dg~v~iw~~~~~  523 (563)
                      +++|+|.+.        .+|++|+.||+|+|||+++++++..+.+|..+|++++|+|+| ++||+|+.|++|+|||+.++
T Consensus       219 ~~~~~p~~~--------~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~  290 (344)
T 4gqb_B          219 SLAWHPQQS--------EVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLS  290 (344)
T ss_dssp             EEEECSSCT--------TEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCC
T ss_pred             eeeecCCCC--------cceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCC
Confidence            999998653        278999999999999999999999999999999999999998 68999999999999999999


Q ss_pred             eeEEEEecCCCEEEEEEcCCCC-EEEEEECCCeEEEEEee
Q 008496          524 KIVKTYTGNGGIFEVCWNKEGD-KIAACFANHTVCVLDFR  562 (563)
Q Consensus       524 ~~~~~~~~~~~i~~l~w~~~g~-~la~~~~~~~v~v~~~~  562 (563)
                      +++....+.+.|++++|+|+|+ .||+|+.|++|.+|++.
T Consensus       291 ~~~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~  330 (344)
T 4gqb_B          291 ELFRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVP  330 (344)
T ss_dssp             EEEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC
T ss_pred             cEEEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECC
Confidence            8876544567899999999986 67788999999999975

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=8e-45  Score=367.10  Aligned_cols=292  Identities=25%  Similarity=0.474  Sum_probs=253.9

Q ss_pred             ceeEecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCC
Q 008496          207 DVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG  286 (563)
Q Consensus       207 ~~~~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g  286 (563)
                      ...+|.+|.+.|++++|+|++++||||+.|++|+|||+.++..             ...+.    .+...|.+++|+|+|
T Consensus        58 ~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~-------------~~~~~----~h~~~v~~~~~s~~g  120 (380)
T 3iz6_a           58 CCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQK-------------THAIK----LHCPWVMECAFAPNG  120 (380)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEE-------------EEEEE----CCCTTCCCCEECTTS
T ss_pred             EeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcc-------------ceEEe----cCCCCEEEEEECCCC
Confidence            3467899999999999999999999999999999999875431             11121    245679999999999


Q ss_pred             CEEEEEeCCCeEEEEEcCCc--------eeEeeccCCCCEEEEEeCCCC-CEEEEeeCCCcEEEEECCCCceeEEe----
Q 008496          287 TLLATGSYDGQARIWSTNGD--------LKCTLSKHKGPIFSLKWNKKG-DYLLTGSCDKTAIVWDVKTEEWKQQF----  353 (563)
Q Consensus       287 ~~l~sg~~dg~i~vw~~~~~--------~~~~~~~h~~~V~~l~~~~~~-~~l~s~s~D~~v~iwd~~~~~~~~~~----  353 (563)
                      ++|++|+.|+.+++|+....        ....+.+|.+.|.++.|+|++ ..|++|+.|++|++||+.++.....+    
T Consensus       121 ~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~  200 (380)
T 3iz6_a          121 QSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEF  200 (380)
T ss_dssp             SEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCS
T ss_pred             CEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeeccc
Confidence            99999999999999997531        334678999999999999974 57999999999999999999888776    


Q ss_pred             -eecccCeEEEecC--CCceEEEEeCCCeEEEEEcC-CCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCC
Q 008496          354 -EFHSGPTLDVDWR--NNVSFATSSTDNMIYVCKIG-ENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQ  429 (563)
Q Consensus       354 -~~~~~~~~~~~~~--~~~~~~~~~~d~~i~~~~~~-~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~  429 (563)
                       ..|...+..+.|.  +...|++++.|+.|++|++. ...++..+.+|.+.|++++|+|++++|++|+.|++|++||+++
T Consensus       201 ~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~  280 (380)
T 3iz6_a          201 PSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRT  280 (380)
T ss_dssp             SSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTT
T ss_pred             CCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCC
Confidence             4577788888875  45788999999999999997 4577889999999999999999999999999999999999999


Q ss_pred             CceeeeecccC-------CCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEe----cCCCCCEEEEE
Q 008496          430 DKYVHDLREHS-------KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSL----NGHREPVYSLA  498 (563)
Q Consensus       430 ~~~~~~~~~~~-------~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~----~~h~~~i~~l~  498 (563)
                      +..+..+..+.       ..+++++|+|++.         +|++|+.||.|++||+..++.+..+    .+|...|++++
T Consensus       281 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~---------~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~  351 (380)
T 3iz6_a          281 GHQLQVYNREPDRNDNELPIVTSVAFSISGR---------LLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLG  351 (380)
T ss_dssp             TEEEEEECCCCSSSCCSSCSCSEEEECSSSS---------EEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEE
T ss_pred             CcEEEEecccccccccccCceEEEEECCCCC---------EEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEE
Confidence            98877765443       2488999999886         7899999999999999999988877    68999999999


Q ss_pred             EcCCCCEEEEEeCCCcEEEEecCCCe
Q 008496          499 FSPTGEYLASGSLDKSMHIWSLKEGK  524 (563)
Q Consensus       499 ~spdg~~lasgs~dg~v~iw~~~~~~  524 (563)
                      |+|||++|++||.||+|+||++..++
T Consensus       352 ~s~dg~~l~sgs~D~~i~iW~~~~~~  377 (380)
T 3iz6_a          352 LSSDGSALCTGSWDKNLKIWAFSGHR  377 (380)
T ss_dssp             ECSSSSEEEEECTTSCEEEEECCSSS
T ss_pred             ECCCCCEEEEeeCCCCEEEEecCCCc
Confidence            99999999999999999999997653

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=2e-43  Score=351.97  Aligned_cols=299  Identities=30%  Similarity=0.509  Sum_probs=244.8

Q ss_pred             eeEecCCCC-ceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCC
Q 008496          208 VTILEGHTS-EVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG  286 (563)
Q Consensus       208 ~~~l~~h~~-~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g  286 (563)
                      +..+.+|.. .|.+++|+|+|++||+|+.|++|+||++.++..            .....  ....|...|++++|+|+|
T Consensus         8 ~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~------------~~~~~--~~~~h~~~v~~~~~sp~g   73 (345)
T 3fm0_A            8 LGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSW------------ICKSV--LSEGHQRTVRKVAWSPCG   73 (345)
T ss_dssp             EEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEE------------EEEEE--ECSSCSSCEEEEEECTTS
T ss_pred             eeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcc------------eeeee--eccccCCcEEEEEECCCC
Confidence            457889987 999999999999999999999999999865421            00110  112456789999999999


Q ss_pred             CEEEEEeCCCeEEEEEcCCc---eeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCc---eeEEeeecccCe
Q 008496          287 TLLATGSYDGQARIWSTNGD---LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEE---WKQQFEFHSGPT  360 (563)
Q Consensus       287 ~~l~sg~~dg~i~vw~~~~~---~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~---~~~~~~~~~~~~  360 (563)
                      ++|++|+.|+.+++|+....   ....+.+|..+|.+++|+|++++|++|+.|++|++||+.++.   +...+..|...+
T Consensus        74 ~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v  153 (345)
T 3fm0_A           74 NYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDV  153 (345)
T ss_dssp             SEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCE
T ss_pred             CEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCe
Confidence            99999999999999997643   456788999999999999999999999999999999997753   345667788899


Q ss_pred             EEEecCCC-ceEEEEeCCCeEEEEEcCCCc--ceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCC-------
Q 008496          361 LDVDWRNN-VSFATSSTDNMIYVCKIGENR--PIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD-------  430 (563)
Q Consensus       361 ~~~~~~~~-~~~~~~~~d~~i~~~~~~~~~--~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~-------  430 (563)
                      ..+.|.++ ..+++++.|+.|++|+.....  ++..+.+|...|.+++|+|++++|++|+.|++|+||+....       
T Consensus       154 ~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~  233 (345)
T 3fm0_A          154 KHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVA  233 (345)
T ss_dssp             EEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCC
T ss_pred             EEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccce
Confidence            99999754 578899999999999998764  45788999999999999999999999999999999996321       


Q ss_pred             --------ceeeeecc-cCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCe---------EEEEecCCCC
Q 008496          431 --------KYVHDLRE-HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK---------LLYSLNGHRE  492 (563)
Q Consensus       431 --------~~~~~~~~-~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~---------~~~~~~~h~~  492 (563)
                              .++..+.+ |...|++++|+|++.         .|++++.|+.|++|+...+.         ......+|..
T Consensus       234 ~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~---------~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~  304 (345)
T 3fm0_A          234 CSGSDPSWKCICTLSGFHSRTIYDIAWCQLTG---------ALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQ  304 (345)
T ss_dssp             CC---CEEEEEEEECSSCSSCEEEEEECTTTC---------CEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSS
T ss_pred             eeccCCccceeEEecCCCCCcEEEEEEecCCC---------EEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccC
Confidence                    22334444 888999999999875         68999999999999986542         1233468999


Q ss_pred             CEEEEEEcCCC-CEEEEEeCCCcEEEEecCCCeeEEEE
Q 008496          493 PVYSLAFSPTG-EYLASGSLDKSMHIWSLKEGKIVKTY  529 (563)
Q Consensus       493 ~i~~l~~spdg-~~lasgs~dg~v~iw~~~~~~~~~~~  529 (563)
                      .|++++|+|++ .+||+||.||+|++|++.+++.+..+
T Consensus       305 ~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~~~~  342 (345)
T 3fm0_A          305 DVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGLHHH  342 (345)
T ss_dssp             CEEEEEECSSSTTEEEEEETTSCEEEEEECC-------
T ss_pred             cEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCCcccc
Confidence            99999999998 59999999999999999987765443

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.4e-43  Score=349.14  Aligned_cols=295  Identities=25%  Similarity=0.419  Sum_probs=235.7

Q ss_pred             eeEecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCC
Q 008496          208 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT  287 (563)
Q Consensus       208 ~~~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~  287 (563)
                      +..|.+|...|.+++|+|+  +||+|+.|++|+||++..+..         .  ....+.  ...|...|.+++|+|+++
T Consensus         7 ~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~---------~--~~~~~~--~~~h~~~v~~v~~sp~~~   71 (330)
T 2hes_X            7 IKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDF---------T--LIDVLD--ETAHKKAIRSVAWRPHTS   71 (330)
T ss_dssp             EEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCC---------E--EEEEEC--TTCCCSCEEEEEECTTSS
T ss_pred             ceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCe---------E--EEEEEe--cCCccCCEEEEEECCCCC
Confidence            4678899999999999998  999999999999999865321         0  111110  112567899999999999


Q ss_pred             EEEEEeCCCeEEEEEcC--------CceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccC
Q 008496          288 LLATGSYDGQARIWSTN--------GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGP  359 (563)
Q Consensus       288 ~l~sg~~dg~i~vw~~~--------~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~  359 (563)
                      +|++|+.|+.|+||+..        ......+.+|..+|.+++|+|++++|++|+.|++|++||++....          
T Consensus        72 ~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~----------  141 (330)
T 2hes_X           72 LLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGE----------  141 (330)
T ss_dssp             EEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCC----------
T ss_pred             EEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCC----------
Confidence            99999999999999974        234567889999999999999999999999999999999853210          


Q ss_pred             eEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCC--ceeeeec
Q 008496          360 TLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD--KYVHDLR  437 (563)
Q Consensus       360 ~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~--~~~~~~~  437 (563)
                                                 ...++..+.+|...|.+++|+|++.+|++|+.|++|++||..++  .++..+.
T Consensus       142 ---------------------------~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~  194 (330)
T 2hes_X          142 ---------------------------EYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLN  194 (330)
T ss_dssp             ---------------------------CCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEEC
T ss_pred             ---------------------------CeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEcc
Confidence                                       01224557789999999999999999999999999999998766  5778889


Q ss_pred             ccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC--------eEEEEecC-CCCCEEEEEEcCCCCEEEE
Q 008496          438 EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG--------KLLYSLNG-HREPVYSLAFSPTGEYLAS  508 (563)
Q Consensus       438 ~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~--------~~~~~~~~-h~~~i~~l~~spdg~~las  508 (563)
                      +|...|.+++|+|++..       .+|++|+.|++|++||+..+        .+...+.+ |..+|++++|+|++ +||+
T Consensus       195 ~h~~~v~~~~~~~~~~~-------~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s  266 (330)
T 2hes_X          195 GHEGTVWSSDFDKTEGV-------FRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIAS  266 (330)
T ss_dssp             CCSSCEEEEEECCSSSS-------CEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEE
T ss_pred             CCCCcEEEEEecCCCCe-------eEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEE
Confidence            99999999999997421       27899999999999998754        45556655 89999999999765 8999


Q ss_pred             EeCCCcEEEEecCCCe--eEEEE-ecCC--CEEEEEEcC--CCCEEEEEECCCeEEEEEee
Q 008496          509 GSLDKSMHIWSLKEGK--IVKTY-TGNG--GIFEVCWNK--EGDKIAACFANHTVCVLDFR  562 (563)
Q Consensus       509 gs~dg~v~iw~~~~~~--~~~~~-~~~~--~i~~l~w~~--~g~~la~~~~~~~v~v~~~~  562 (563)
                      |+.||.|+||+..++.  ++... ..+.  .|..++|+|  +|+.||+|+.|++|.|||++
T Consensus       267 ~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~  327 (330)
T 2hes_X          267 VGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLE  327 (330)
T ss_dssp             EETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC-
T ss_pred             EeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEec
Confidence            9999999999998874  33333 3333  699999999  78999999999999999985

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=4.9e-44  Score=357.95  Aligned_cols=288  Identities=19%  Similarity=0.312  Sum_probs=239.0

Q ss_pred             cCCCCceEEEEECCCCCEEEEeeC------CCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCC
Q 008496          212 EGHTSEVCACAWSPAGSLLASGSG------DSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE  285 (563)
Q Consensus       212 ~~h~~~V~~~~~sp~~~~latgs~------D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~  285 (563)
                      ..|...|++++|||||++||+||.      |+.+++|+..++.......             .....+...|++++|+|+
T Consensus        39 ~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~-------------~~~~~~~~~V~~~~~s~d  105 (357)
T 4g56_B           39 ACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLC-------------TAGVQTEAGVTDVAWVSE  105 (357)
T ss_dssp             -CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGC-------------SEEEECSSCEEEEEEETT
T ss_pred             ccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEe-------------cccCCCCCCEEEEEEcCC
Confidence            469999999999999999999998      6789999876543221110             111124567999999999


Q ss_pred             CCEEEEEeCCCeEEEEEcCCc-e----eEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCe
Q 008496          286 GTLLATGSYDGQARIWSTNGD-L----KCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPT  360 (563)
Q Consensus       286 g~~l~sg~~dg~i~vw~~~~~-~----~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~  360 (563)
                      +. +++++.||.|+|||.... .    .....+|.++|++++|+|++++|++|+.|++|++||+++++.           
T Consensus       106 ~~-~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~-----------  173 (357)
T 4g56_B          106 KG-ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAV-----------  173 (357)
T ss_dssp             TE-EEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEE-----------
T ss_pred             CC-EEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcE-----------
Confidence            86 556788999999997532 1    234558999999999999999999999999999999887643           


Q ss_pred             EEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCC-EEEEEeCCCcEEEEeCCCCceeeee--c
Q 008496          361 LDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGS-LLASCSDDVTAKIWNMKQDKYVHDL--R  437 (563)
Q Consensus       361 ~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~-~las~s~dg~i~iwd~~~~~~~~~~--~  437 (563)
                                                    +..+.+|...|++++|+|++. ++++++.|++|++||+++++++..+  .
T Consensus       174 ------------------------------~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~  223 (357)
T 4g56_B          174 ------------------------------LKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFC  223 (357)
T ss_dssp             ------------------------------EEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCT
T ss_pred             ------------------------------EEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeec
Confidence                                          234567889999999999875 7899999999999999988876544  4


Q ss_pred             ccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCC-CEEEEEeCCCcEE
Q 008496          438 EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTG-EYLASGSLDKSMH  516 (563)
Q Consensus       438 ~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg-~~lasgs~dg~v~  516 (563)
                      .|...+++++|+|++.        .+|++|+.|+.|++||+++++++..+.+|..+|++++|+|++ ++||+|+.|++|+
T Consensus       224 ~~~~~v~~v~~sp~~~--------~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~  295 (357)
T 4g56_B          224 ASDTIPTSVTWHPEKD--------DTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVA  295 (357)
T ss_dssp             TCCSCEEEEEECTTST--------TEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEE
T ss_pred             cccccccchhhhhccc--------ceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEE
Confidence            5677899999999753        278999999999999999999999999999999999999997 6899999999999


Q ss_pred             EEecCCCeeEEEEecCCCEEEEEEcC-CCCEEEEEECCCeEEEEEee
Q 008496          517 IWSLKEGKIVKTYTGNGGIFEVCWNK-EGDKIAACFANHTVCVLDFR  562 (563)
Q Consensus       517 iw~~~~~~~~~~~~~~~~i~~l~w~~-~g~~la~~~~~~~v~v~~~~  562 (563)
                      |||+++++++..+...+.|++++|+| ++++||+|+.|++|.|||+.
T Consensus       296 iwd~~~~~~~~~~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~  342 (357)
T 4g56_B          296 VLDADFSEVFRDLSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLP  342 (357)
T ss_dssp             EECTTSCEEEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC
T ss_pred             EEECCCCcEeEECCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECC
Confidence            99999999988877778899999998 89999999999999999985

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=1.6e-42  Score=370.02  Aligned_cols=325  Identities=31%  Similarity=0.561  Sum_probs=287.8

Q ss_pred             CCceeEecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECC
Q 008496          205 NSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG  284 (563)
Q Consensus       205 ~~~~~~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~  284 (563)
                      ...+..+.+|...|.+++|+|++.+|++|+.|+.+++|+....              .+...    ..+...|++++|+|
T Consensus       211 ~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~~~--------------~~~~~----~~~~~~v~~v~~~~  272 (577)
T 2ymu_A          211 GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQ--------------LLQTL----TGHSSSVNGVAFRP  272 (577)
T ss_dssp             SCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSC--------------EEEEE----CCCSSCEEEEEECT
T ss_pred             CcEEEEEecCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCC--------------EEEEE----ecCCCCEEEEEEcC
Confidence            3445678899999999999999999999999999999995421              11112    23457899999999


Q ss_pred             CCCEEEEEeCCCeEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEe
Q 008496          285 EGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVD  364 (563)
Q Consensus       285 ~g~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~  364 (563)
                      ++++|++++.|+.+++|+.++.....+.+|..+|++++|+|++.+|++++.|++|++||+... ....+..|...+..+.
T Consensus       273 d~~~l~~~~~d~~i~~w~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~-~~~~~~~~~~~v~~~~  351 (577)
T 2ymu_A          273 DGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ-HLQTLTGHSSSVWGVA  351 (577)
T ss_dssp             TSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSC-EEEEECCCSSCEEEEE
T ss_pred             CCCEEEEEeCCCEEEEEeCCCcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCC-eeEEEeCCCCCEEEEE
Confidence            999999999999999999999988899999999999999999999999999999999997654 4456677888888898


Q ss_pred             cCCC-ceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccCCCE
Q 008496          365 WRNN-VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEI  443 (563)
Q Consensus       365 ~~~~-~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i  443 (563)
                      +.++ ..+++++.|+.|++|+. +.+.+..+.+|...|++++|+|++++|++++.|+.|++||. +++.+..+..|...|
T Consensus       352 ~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v  429 (577)
T 2ymu_A          352 FSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSV  429 (577)
T ss_dssp             ECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCE
T ss_pred             ECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCe
Confidence            8754 56788899999999996 45677888999999999999999999999999999999995 566778889999999


Q ss_pred             EEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 008496          444 YTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEG  523 (563)
Q Consensus       444 ~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~  523 (563)
                      ++++|+|++.         +|++++.|++|++||. +++.+..+.+|..+|++++|+|||++||+|+.|+.|++|+. ++
T Consensus       430 ~~~~~s~d~~---------~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~  498 (577)
T 2ymu_A          430 WGVAFSPDDQ---------TIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NG  498 (577)
T ss_dssp             EEEEECTTSS---------EEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TS
T ss_pred             EEEEECCCCC---------EEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CC
Confidence            9999999875         7899999999999996 57788899999999999999999999999999999999995 67


Q ss_pred             eeEEEEecC-CCEEEEEEcCCCCEEEEEECCCeEEEEEe
Q 008496          524 KIVKTYTGN-GGIFEVCWNKEGDKIAACFANHTVCVLDF  561 (563)
Q Consensus       524 ~~~~~~~~~-~~i~~l~w~~~g~~la~~~~~~~v~v~~~  561 (563)
                      ++++.+.++ ..|.+++|+|+|++||+++.|+.|+|||.
T Consensus       499 ~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~  537 (577)
T 2ymu_A          499 QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR  537 (577)
T ss_dssp             CEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT
T ss_pred             CEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC
Confidence            888888764 57999999999999999999999999984

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=1.1e-41  Score=337.34  Aligned_cols=321  Identities=17%  Similarity=0.258  Sum_probs=277.0

Q ss_pred             CCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEEe
Q 008496          214 HTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGS  293 (563)
Q Consensus       214 h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~  293 (563)
                      |..+|.+++|+|+|++++++..++.+.+|.....            ......     ..+...|++++|+|++++|++++
T Consensus         8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~------------~~~~~~-----~~h~~~v~~~~~~~~~~~l~~~~   70 (337)
T 1gxr_A            8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRH------------ARQINT-----LNHGEVVCAVTISNPTRHVYTGG   70 (337)
T ss_dssp             EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSE------------EEEEEE-----ECCSSCCCEEEECSSSSEEEEEC
T ss_pred             cCCceeEEEECCCCCEEEeecCCCcEeccccCCc------------ccccee-----ccCCCceEEEEEecCCcEEEEcC
Confidence            4567999999999999999887776666643211            111111     13567899999999999999999


Q ss_pred             CCCeEEEEEcCCc----eeEeec--cCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCc--eeEEeeecccCeEEEec
Q 008496          294 YDGQARIWSTNGD----LKCTLS--KHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEE--WKQQFEFHSGPTLDVDW  365 (563)
Q Consensus       294 ~dg~i~vw~~~~~----~~~~~~--~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~--~~~~~~~~~~~~~~~~~  365 (563)
                       ||.|++|+....    ....+.  .|..+|.+++|+|++++|++++.|+.|++||+.+++  ....+..+...+.++.|
T Consensus        71 -dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~  149 (337)
T 1gxr_A           71 -KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAI  149 (337)
T ss_dssp             -BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEE
T ss_pred             -CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEE
Confidence             999999997642    222333  799999999999999999999999999999999877  55566778888999999


Q ss_pred             CCC-ceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEE
Q 008496          366 RNN-VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIY  444 (563)
Q Consensus       366 ~~~-~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~  444 (563)
                      .++ ..+++++.|+.|++|++...+++..+.+|...|.+++|+|++++|++++.|+.|++||+++++.+..+ .+...+.
T Consensus       150 ~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~-~~~~~v~  228 (337)
T 1gxr_A          150 SPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQH-DFTSQIF  228 (337)
T ss_dssp             CTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE-ECSSCEE
T ss_pred             CCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeee-cCCCceE
Confidence            755 56788999999999999999999999999999999999999999999999999999999999887765 4778899


Q ss_pred             EEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCe
Q 008496          445 TIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGK  524 (563)
Q Consensus       445 ~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~  524 (563)
                      +++|+|++.         +|++++.|+.|++||+..++. ..+..|..+|.+++|+|++++|++++.||.|++|++.+++
T Consensus       229 ~~~~s~~~~---------~l~~~~~~~~i~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~  298 (337)
T 1gxr_A          229 SLGYCPTGE---------WLAVGMESSNVEVLHVNKPDK-YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGA  298 (337)
T ss_dssp             EEEECTTSS---------EEEEEETTSCEEEEETTSSCE-EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred             EEEECCCCC---------EEEEEcCCCcEEEEECCCCCe-EEEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCe
Confidence            999999875         788999999999999998775 4677899999999999999999999999999999999999


Q ss_pred             eEEEEecCCCEEEEEEcCCCCEEEEEECCCeEEEEEeeC
Q 008496          525 IVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLDFRM  563 (563)
Q Consensus       525 ~~~~~~~~~~i~~l~w~~~g~~la~~~~~~~v~v~~~~~  563 (563)
                      .+........+.+++|+|+|++|++++.||.|.||++.+
T Consensus       299 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~  337 (337)
T 1gxr_A          299 SIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYEVIY  337 (337)
T ss_dssp             EEEEEECSSCEEEEEECTTSCEEEEEETTSCEEEEEEEC
T ss_pred             EEEEecCCCcEEEEEECCCCCEEEEecCCCeEEEEEEeC
Confidence            887777788899999999999999999999999999864

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=1.6e-41  Score=344.50  Aligned_cols=298  Identities=26%  Similarity=0.479  Sum_probs=242.2

Q ss_pred             CCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEee-ecccccCCCCeEEEEECCCCCEEEE
Q 008496          213 GHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHV-KGRTNEKSKDVTTLDWNGEGTLLAT  291 (563)
Q Consensus       213 ~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~V~~l~~s~~g~~l~s  291 (563)
                      +|...|++++|+|+|++||+|+ |++++||++.++................... ..........|++++|+|+|++|++
T Consensus        62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s  140 (393)
T 1erj_A           62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT  140 (393)
T ss_dssp             ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred             CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEE
Confidence            6999999999999999999976 7899999998764321111000000000000 0000112235999999999999999


Q ss_pred             EeCCCeEEEEEcC-CceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecCCCce
Q 008496          292 GSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVS  370 (563)
Q Consensus       292 g~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  370 (563)
                      |+.||.|++||.. +.....+.+|..+|++++|+|++.+|++|+.|++|++||+++++....+                 
T Consensus       141 ~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~-----------------  203 (393)
T 1erj_A          141 GAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTL-----------------  203 (393)
T ss_dssp             EETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE-----------------
T ss_pred             EcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEE-----------------
Confidence            9999999999986 4566788999999999999999999999999999999999887543221                 


Q ss_pred             EEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECC-CCCEEEEEeCCCcEEEEeCCCCceeeee-------cccCCC
Q 008496          371 FATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDP-TGSLLASCSDDVTAKIWNMKQDKYVHDL-------REHSKE  442 (563)
Q Consensus       371 ~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~-~~~~las~s~dg~i~iwd~~~~~~~~~~-------~~~~~~  442 (563)
                                               .+...+.+++|+| ++++|++|+.|++|++||++++..+..+       .+|...
T Consensus       204 -------------------------~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~  258 (393)
T 1erj_A          204 -------------------------SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDS  258 (393)
T ss_dssp             -------------------------ECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSC
T ss_pred             -------------------------EcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCC
Confidence                                     1334678899999 8999999999999999999998877666       578999


Q ss_pred             EEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC------------CeEEEEecCCCCCEEEEEEcCCCCEEEEEe
Q 008496          443 IYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL------------GKLLYSLNGHREPVYSLAFSPTGEYLASGS  510 (563)
Q Consensus       443 i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~------------~~~~~~~~~h~~~i~~l~~spdg~~lasgs  510 (563)
                      |++++|+|++.         +|++|+.||+|++||++.            +.+...+.+|...|.+++|+|++.+|++|+
T Consensus       259 v~~v~~~~~g~---------~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs  329 (393)
T 1erj_A          259 VYSVVFTRDGQ---------SVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGS  329 (393)
T ss_dssp             EEEEEECTTSS---------EEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEE
T ss_pred             EEEEEECCCCC---------EEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEe
Confidence            99999999875         789999999999999875            345667889999999999999999999999


Q ss_pred             CCCcEEEEecCCCeeEEEEecC-CCEEEEEEcC------CCCEEEEEECCCeEEEEEee
Q 008496          511 LDKSMHIWSLKEGKIVKTYTGN-GGIFEVCWNK------EGDKIAACFANHTVCVLDFR  562 (563)
Q Consensus       511 ~dg~v~iw~~~~~~~~~~~~~~-~~i~~l~w~~------~g~~la~~~~~~~v~v~~~~  562 (563)
                      .|+.|++||+.+++.+..+.++ ..|.+++|++      +++.||+|+.|++|.||+++
T Consensus       330 ~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~  388 (393)
T 1erj_A          330 KDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK  388 (393)
T ss_dssp             TTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred             CCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECccc
Confidence            9999999999999999888764 5699999886      78999999999999999986

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=2e-41  Score=338.72  Aligned_cols=280  Identities=20%  Similarity=0.385  Sum_probs=252.6

Q ss_pred             cCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcC-CceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCC---
Q 008496          272 EKSKDVTTLDWNGEGTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTE---  347 (563)
Q Consensus       272 ~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~---  347 (563)
                      .|...|++++|+|++++|++|+.||.|++|+.. +.....+..|...|.+++|+|+|.+|++|+.|+.+++|++...   
T Consensus        62 gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~  141 (354)
T 2pbi_B           62 GHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNE  141 (354)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTC
T ss_pred             CCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccc
Confidence            356789999999999999999999999999964 5566678889999999999999999999999999999998643   


Q ss_pred             ---ceeEEeeecccCeEEEecCCC-ceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECC--CCCEEEEEeCCCc
Q 008496          348 ---EWKQQFEFHSGPTLDVDWRNN-VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDP--TGSLLASCSDDVT  421 (563)
Q Consensus       348 ---~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~--~~~~las~s~dg~  421 (563)
                         .....+..|...+..+.|.++ ..+++++.|++|++|++...+++..+.+|...|.+++|+|  ++++|++|+.||+
T Consensus       142 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~  221 (354)
T 2pbi_B          142 NMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKK  221 (354)
T ss_dssp             CSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSC
T ss_pred             cccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCe
Confidence               344567788889999999765 4789999999999999999999999999999999999987  5789999999999


Q ss_pred             EEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCC--CCCEEEEEE
Q 008496          422 AKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGH--REPVYSLAF  499 (563)
Q Consensus       422 i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h--~~~i~~l~~  499 (563)
                      |++||+++++++..+..|...|.+++|+|++.         +|++|+.|++|++||++.++.+..+..+  ...+.+++|
T Consensus       222 v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~---------~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~  292 (354)
T 2pbi_B          222 AMVWDMRSGQCVQAFETHESDVNSVRYYPSGD---------AFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDF  292 (354)
T ss_dssp             EEEEETTTCCEEEEECCCSSCEEEEEECTTSS---------EEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEE
T ss_pred             EEEEECCCCcEEEEecCCCCCeEEEEEeCCCC---------EEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEE
Confidence            99999999999999999999999999999875         7999999999999999998887766543  457899999


Q ss_pred             cCCCCEEEEEeCCCcEEEEecCCCeeEEEEecC-CCEEEEEEcCCCCEEEEEECCCeEEEEE
Q 008496          500 SPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGN-GGIFEVCWNKEGDKIAACFANHTVCVLD  560 (563)
Q Consensus       500 spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~~-~~i~~l~w~~~g~~la~~~~~~~v~v~~  560 (563)
                      +|+|++|++|+.|+.|+|||+.+++.+..+.++ ..|.+++|+|+|++||+|+.|++|.||+
T Consensus       293 s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          293 SLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             CTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred             eCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence            999999999999999999999999988888654 5799999999999999999999999996

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.6e-44  Score=366.51  Aligned_cols=323  Identities=20%  Similarity=0.383  Sum_probs=275.2

Q ss_pred             CceEEEEECCCCC-EEEEe----------eCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECC
Q 008496          216 SEVCACAWSPAGS-LLASG----------SGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG  284 (563)
Q Consensus       216 ~~V~~~~~sp~~~-~latg----------s~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~  284 (563)
                      ..|.+++|+|+++ +||+|          +.|+.|+||++.++.....               .....+...|++++|+|
T Consensus        13 ~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~---------------~~~~~~~~~v~~~~~s~   77 (416)
T 2pm9_A           13 SRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKP---------------IASLQVDSKFNDLDWSH   77 (416)
T ss_dssp             EESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSC---------------SCCCCCSSCEEEEEECS
T ss_pred             hhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcE---------------EEEEecCCceEEEEECC
Confidence            4688999999986 99999          8999999999976532100               00112456799999999


Q ss_pred             CCCEEEEEeCCCeEEEEEcCC-----ceeEeeccCCCCEEEEEeCCC-CCEEEEeeCCCcEEEEECCCCc------eeE-
Q 008496          285 EGTLLATGSYDGQARIWSTNG-----DLKCTLSKHKGPIFSLKWNKK-GDYLLTGSCDKTAIVWDVKTEE------WKQ-  351 (563)
Q Consensus       285 ~g~~l~sg~~dg~i~vw~~~~-----~~~~~~~~h~~~V~~l~~~~~-~~~l~s~s~D~~v~iwd~~~~~------~~~-  351 (563)
                      ++.+|++|+.||.|++|+...     .....+.+|..+|++++|+|+ +++|++++.|++|++||+.++.      ... 
T Consensus        78 ~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~  157 (416)
T 2pm9_A           78 NNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLT  157 (416)
T ss_dssp             SSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBC
T ss_pred             CCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccc
Confidence            999999999999999999875     467788899999999999998 8999999999999999998876      222 


Q ss_pred             --EeeecccCeEEEecCCC--ceEEEEeCCCeEEEEEcCCCcceeeecCC------CcceeEEEECCCC-CEEEEEeCCC
Q 008496          352 --QFEFHSGPTLDVDWRNN--VSFATSSTDNMIYVCKIGENRPIKTFAGH------QGEVNCVKWDPTG-SLLASCSDDV  420 (563)
Q Consensus       352 --~~~~~~~~~~~~~~~~~--~~~~~~~~d~~i~~~~~~~~~~~~~~~~h------~~~i~~~~~~~~~-~~las~s~dg  420 (563)
                        .+..|...+.++.|.++  ..+++++.|+.|++|++...+++..+..|      ...|.+++|+|++ .+|++++.|+
T Consensus       158 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~  237 (416)
T 2pm9_A          158 PGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSD  237 (416)
T ss_dssp             CCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCS
T ss_pred             cccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCC
Confidence              23557778889999765  67899999999999999999888888776      7889999999997 6899999999


Q ss_pred             ---cEEEEeCCCC-ceeeeec-ccCCCEEEEEEcc-CCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCE
Q 008496          421 ---TAKIWNMKQD-KYVHDLR-EHSKEIYTIRWSP-TGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPV  494 (563)
Q Consensus       421 ---~i~iwd~~~~-~~~~~~~-~~~~~i~~~~~~p-~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i  494 (563)
                         .|++||+++. .++..+. .|...|++++|+| ++.         +|++++.||.|++||+++++++..+.+|..+|
T Consensus       238 ~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~---------~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v  308 (416)
T 2pm9_A          238 NDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEH---------LLLSSGRDNTVLLWNPESAEQLSQFPARGNWC  308 (416)
T ss_dssp             SSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSS---------CEEEEESSSEEEEECSSSCCEEEEEECSSSCC
T ss_pred             CCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCC---------eEEEEeCCCCEEEeeCCCCccceeecCCCCce
Confidence               9999999986 5677777 8999999999999 554         68999999999999999999999999999999


Q ss_pred             EEEEEcCCC-CEEEEEeCCCcEEEEecCCCeeEEEE---------------e---------------------cCCCEEE
Q 008496          495 YSLAFSPTG-EYLASGSLDKSMHIWSLKEGKIVKTY---------------T---------------------GNGGIFE  537 (563)
Q Consensus       495 ~~l~~spdg-~~lasgs~dg~v~iw~~~~~~~~~~~---------------~---------------------~~~~i~~  537 (563)
                      ++++|+|++ .+|++++.||.|+||++.+++.....               .                     ....+..
T Consensus       309 ~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  388 (416)
T 2pm9_A          309 FKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPA  388 (416)
T ss_dssp             CCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCC
T ss_pred             EEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccc
Confidence            999999999 89999999999999999876532111               0                     1234568


Q ss_pred             EEEcCCCCEEEEEECCCeEEEEEee
Q 008496          538 VCWNKEGDKIAACFANHTVCVLDFR  562 (563)
Q Consensus       538 l~w~~~g~~la~~~~~~~v~v~~~~  562 (563)
                      ++|+|+|++||+++.|+.|.||++.
T Consensus       389 ~~~s~dg~~la~~~~d~~v~~w~~~  413 (416)
T 2pm9_A          389 AHWAFGGKLVQITPDGKGVSITNPK  413 (416)
T ss_dssp             CEEETTTEEECBCTTSSCBCCBCCC
T ss_pred             eEEeeCCeEEEEeCCCCeEEEEEec
Confidence            9999999999999999999999874

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=5.4e-42  Score=341.43  Aligned_cols=294  Identities=22%  Similarity=0.334  Sum_probs=238.2

Q ss_pred             ceeEecCCCCceEEEEE-----CC-CCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEE
Q 008496          207 DVTILEGHTSEVCACAW-----SP-AGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTL  280 (563)
Q Consensus       207 ~~~~l~~h~~~V~~~~~-----sp-~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l  280 (563)
                      ...+|.+|.+.|++++|     +| ++++||||+.|++|++|++........      .......+    ..|...|+++
T Consensus        13 ~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~------~~~~~~~l----~~h~~~V~~~   82 (343)
T 2xzm_R           13 KRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGY------FGIPHKAL----TGHNHFVSDL   82 (343)
T ss_dssp             EEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSB------SEEEEEEE----CCCSSCEEEE
T ss_pred             eeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccc------cccccchh----ccCCCceEEE
Confidence            34678999999999999     77 899999999999999999875421110      00111222    3456789999


Q ss_pred             EECCCCCEEEEEeCCCeEEEEEcC-CceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEee---ec
Q 008496          281 DWNGEGTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFE---FH  356 (563)
Q Consensus       281 ~~s~~g~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~---~~  356 (563)
                      +|+|++.+|++|+.|+.|++||.. +.....+.+|..+|++++|+|++++|++|+.|++|++||+.... .....   .|
T Consensus        83 ~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~-~~~~~~~~~~  161 (343)
T 2xzm_R           83 ALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGEC-KFSSAEKENH  161 (343)
T ss_dssp             EECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCE-EEECCTTTSC
T ss_pred             EECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCc-eeeeecccCC
Confidence            999999999999999999999975 56677889999999999999999999999999999999997433 22222   46


Q ss_pred             ccCeEEEecCCC-----------ceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEE
Q 008496          357 SGPTLDVDWRNN-----------VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIW  425 (563)
Q Consensus       357 ~~~~~~~~~~~~-----------~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iw  425 (563)
                      ...+.++.|.+.           ..+++++.|+.|++|+. .......+.+|...|++++|+|++++|++|+.|++|++|
T Consensus       162 ~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iw  240 (343)
T 2xzm_R          162 SDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIW  240 (343)
T ss_dssp             SSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEE
T ss_pred             CceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEE
Confidence            667888888654           46899999999999994 456677889999999999999999999999999999999


Q ss_pred             eCCCCc-eeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEE--Eec-----------CCC
Q 008496          426 NMKQDK-YVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLY--SLN-----------GHR  491 (563)
Q Consensus       426 d~~~~~-~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~--~~~-----------~h~  491 (563)
                      |+.... ....+ .+...|.+++|+|++.         +++ ++.|+.|++||+.+++...  .+.           +|.
T Consensus       241 d~~~~~~~~~~~-~~~~~v~~v~~sp~~~---------~la-~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (343)
T 2xzm_R          241 DILNLTYPQREF-DAGSTINQIAFNPKLQ---------WVA-VGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKN  309 (343)
T ss_dssp             ESSCCSSCSEEE-ECSSCEEEEEECSSSC---------EEE-EEESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSC
T ss_pred             ECCCCcccceee-cCCCcEEEEEECCCCC---------EEE-EECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCC
Confidence            995433 33333 3556799999999864         454 5568899999998765432  443           688


Q ss_pred             CCEEEEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 008496          492 EPVYSLAFSPTGEYLASGSLDKSMHIWSLKEG  523 (563)
Q Consensus       492 ~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~  523 (563)
                      ..|++++|+|+|++||+|+.||.|++|++.++
T Consensus       310 ~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g  341 (343)
T 2xzm_R          310 PQCTSLAWNALGKKLFAGFTDGVIRTFSFETS  341 (343)
T ss_dssp             CCEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred             CceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence            88999999999999999999999999998654

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=6e-41  Score=332.74  Aligned_cols=293  Identities=25%  Similarity=0.383  Sum_probs=246.9

Q ss_pred             eEecCCCCceEEEEECCC-CCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCC
Q 008496          209 TILEGHTSEVCACAWSPA-GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT  287 (563)
Q Consensus       209 ~~l~~h~~~V~~~~~sp~-~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~  287 (563)
                      .+|+||++.|++++|+|+ +++|||||.|++|+||++.......        ......+    ..+...|++++|+|+|+
T Consensus        32 ~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~--------~~~~~~l----~~h~~~V~~~~~s~dg~   99 (340)
T 4aow_A           32 GTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNY--------GIPQRAL----RGHSHFVSDVVISSDGQ   99 (340)
T ss_dssp             EEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCS--------EEEEEEE----CCCSSCEEEEEECTTSS
T ss_pred             EEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCccc--------ceeeEEE----eCCCCCEEEEEECCCCC
Confidence            478999999999999998 6899999999999999987643211        1112222    23567899999999999


Q ss_pred             EEEEEeCCCeEEEEEcCCc-eeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCcee-EEeeecccCeEEEec
Q 008496          288 LLATGSYDGQARIWSTNGD-LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWK-QQFEFHSGPTLDVDW  365 (563)
Q Consensus       288 ~l~sg~~dg~i~vw~~~~~-~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~-~~~~~~~~~~~~~~~  365 (563)
                      +|++|+.||.|++|+.... .......+...+..+.+++++.+|++|+.|+.+++||+...... .....|...+..+.|
T Consensus       100 ~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~  179 (340)
T 4aow_A          100 FALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRF  179 (340)
T ss_dssp             EEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEE
T ss_pred             EEEEEcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEE
Confidence            9999999999999997654 44566778889999999999999999999999999998765433 234456667777776


Q ss_pred             CC---CceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccCCC
Q 008496          366 RN---NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKE  442 (563)
Q Consensus       366 ~~---~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~  442 (563)
                      ..   ...+++++.|+.|++|++...+.+..+.+|.+.|++++|+|++++|++|+.|++|++||+++.+.+..+..+ ..
T Consensus       180 ~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~-~~  258 (340)
T 4aow_A          180 SPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGG-DI  258 (340)
T ss_dssp             CSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECS-SC
T ss_pred             ccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCC-ce
Confidence            43   345788999999999999999999999999999999999999999999999999999999999988877654 67


Q ss_pred             EEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEec---------CCCCCEEEEEEcCCCCEEEEEeCCC
Q 008496          443 IYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLN---------GHREPVYSLAFSPTGEYLASGSLDK  513 (563)
Q Consensus       443 i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~---------~h~~~i~~l~~spdg~~lasgs~dg  513 (563)
                      +.++.|+|++.          +++++.|+.|++||++.+..+..+.         +|...|++++|+|||++||+|+.||
T Consensus       259 v~~~~~~~~~~----------~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg  328 (340)
T 4aow_A          259 INALCFSPNRY----------WLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDN  328 (340)
T ss_dssp             EEEEEECSSSS----------EEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTS
T ss_pred             EEeeecCCCCc----------eeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCC
Confidence            99999999763          5677789999999999888776653         6888999999999999999999999


Q ss_pred             cEEEEecCCCe
Q 008496          514 SMHIWSLKEGK  524 (563)
Q Consensus       514 ~v~iw~~~~~~  524 (563)
                      .|+|||+.+|+
T Consensus       329 ~v~iW~~~tGt  339 (340)
T 4aow_A          329 LVRVWQVTIGT  339 (340)
T ss_dssp             CEEEEEEEC--
T ss_pred             EEEEEeCCCcC
Confidence            99999999875

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=2.8e-42  Score=348.52  Aligned_cols=282  Identities=20%  Similarity=0.366  Sum_probs=249.4

Q ss_pred             cCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcC-CceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCc--
Q 008496          272 EKSKDVTTLDWNGEGTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEE--  348 (563)
Q Consensus       272 ~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~--  348 (563)
                      +|...|++++|+|+|++|++|+.||.|+||+.. +.....+..|...|.+++|+|+|++|++|+.|+++++||+.+..  
T Consensus        64 gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~  143 (380)
T 3iz6_a           64 GHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADR  143 (380)
T ss_dssp             CCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSC
T ss_pred             ccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccc
Confidence            356789999999999999999999999999975 56677889999999999999999999999999999999986532  


Q ss_pred             -----eeEEeeecccCeEEEecCC--CceEEEEeCCCeEEEEEcCCCcceeee-----cCCCcceeEEEECC-CCCEEEE
Q 008496          349 -----WKQQFEFHSGPTLDVDWRN--NVSFATSSTDNMIYVCKIGENRPIKTF-----AGHQGEVNCVKWDP-TGSLLAS  415 (563)
Q Consensus       349 -----~~~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~i~~~~~~~~~~~~~~-----~~h~~~i~~~~~~~-~~~~las  415 (563)
                           ....+..|.+.+..+.|.+  ...+++++.|++|++|++.++..+..+     .+|...|.+++|++ ++.+|++
T Consensus       144 ~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s  223 (380)
T 3iz6_a          144 DGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFIS  223 (380)
T ss_dssp             CCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEE
T ss_pred             cCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEE
Confidence                 3345667888888888765  456999999999999999998888777     68999999999987 8899999


Q ss_pred             EeCCCcEEEEeCC-CCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCC---
Q 008496          416 CSDDVTAKIWNMK-QDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHR---  491 (563)
Q Consensus       416 ~s~dg~i~iwd~~-~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~---  491 (563)
                      |+.|++|++||++ ....+..+.+|...|.+++|+|++.         +|++|+.||+|++||+++++++..+..+.   
T Consensus       224 gs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~---------~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~  294 (380)
T 3iz6_a          224 GSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQ---------RFGTGSDDGTCRLFDMRTGHQLQVYNREPDRN  294 (380)
T ss_dssp             EETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSS---------EEEEECSSSCEEEEETTTTEEEEEECCCCSSS
T ss_pred             EECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCC---------eEEEEcCCCeEEEEECCCCcEEEEeccccccc
Confidence            9999999999998 4567788899999999999999875         79999999999999999999988876543   


Q ss_pred             ----CCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEe-----cCCCEEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496          492 ----EPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYT-----GNGGIFEVCWNKEGDKIAACFANHTVCVLDFR  562 (563)
Q Consensus       492 ----~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~-----~~~~i~~l~w~~~g~~la~~~~~~~v~v~~~~  562 (563)
                          ..|++++|+|+|++|++|+.||.|++||+.+++.+..+.     ..+.|.+++|+|+|+.||+|+.|++|.||++.
T Consensus       295 ~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~  374 (380)
T 3iz6_a          295 DNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFS  374 (380)
T ss_dssp             CCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECC
T ss_pred             ccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecC
Confidence                248999999999999999999999999999998887762     24569999999999999999999999999975

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=1.2e-40  Score=327.17  Aligned_cols=289  Identities=28%  Similarity=0.519  Sum_probs=252.1

Q ss_pred             eeEecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCC
Q 008496          208 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT  287 (563)
Q Consensus       208 ~~~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~  287 (563)
                      ...+.+|...|++++|+|++++||+|+.|+.+++|++.++...             ..+    ..+...|++++|+|+++
T Consensus        16 ~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~-------------~~~----~~h~~~v~~~~~~~~~~   78 (312)
T 4ery_A           16 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-------------KTI----SGHKLGISDVAWSSDSN   78 (312)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEE-------------EEE----CCCSSCEEEEEECTTSS
T ss_pred             EEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccc-------------hhh----ccCCCceEEEEEcCCCC
Confidence            4678999999999999999999999999999999998764321             111    23457799999999999


Q ss_pred             EEEEEeCCCeEEEEEcC-CceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecC
Q 008496          288 LLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR  366 (563)
Q Consensus       288 ~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~  366 (563)
                      +|++|+.||.|++|+.. +.....+.+|...|.++.|+|++++|++|+.|++|++||+++++....+..|..++..+.|.
T Consensus        79 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~  158 (312)
T 4ery_A           79 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN  158 (312)
T ss_dssp             EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEC
T ss_pred             EEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEc
Confidence            99999999999999976 56677889999999999999999999999999999999999999999999999999999997


Q ss_pred             CC-ceEEEEeCCCeEEEEEcCCCcceeeec-CCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEE
Q 008496          367 NN-VSFATSSTDNMIYVCKIGENRPIKTFA-GHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIY  444 (563)
Q Consensus       367 ~~-~~~~~~~~d~~i~~~~~~~~~~~~~~~-~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~  444 (563)
                      .+ ..+++++.|+.|++|++...+.+..+. .+...+.+++|+|++++|++++.|+.|++||+.+++.+..+..|.....
T Consensus       159 ~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~  238 (312)
T 4ery_A          159 RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY  238 (312)
T ss_dssp             TTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSS
T ss_pred             CCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceE
Confidence            54 578899999999999999888776654 4567899999999999999999999999999999999888888866543


Q ss_pred             E--EEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEe--CCCcEEEEec
Q 008496          445 T--IRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGS--LDKSMHIWSL  520 (563)
Q Consensus       445 ~--~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs--~dg~v~iw~~  520 (563)
                      .  ..+++.+.        .+|++|+.||.|++||+.+++.+..+.+|..+|.+++|+|++.+|++++  .|+.|++|+.
T Consensus       239 ~~~~~~~~~~~--------~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~  310 (312)
T 4ery_A          239 CIFANFSVTGG--------KWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS  310 (312)
T ss_dssp             CCCEEEECSSS--------CEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEEC
T ss_pred             EEEEEEEeCCC--------cEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecC
Confidence            2  23333221        2789999999999999999999999999999999999999999999997  6999999986


Q ss_pred             C
Q 008496          521 K  521 (563)
Q Consensus       521 ~  521 (563)
                      .
T Consensus       311 d  311 (312)
T 4ery_A          311 D  311 (312)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=2.1e-40  Score=342.22  Aligned_cols=317  Identities=25%  Similarity=0.455  Sum_probs=281.1

Q ss_pred             eeEecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCC
Q 008496          208 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT  287 (563)
Q Consensus       208 ~~~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~  287 (563)
                      ...+.+|.+.|.. ++++++++|++|+.||+|++|++.++..             +..+    ..+...|++++|+  +.
T Consensus       111 ~~~l~~h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~~~~-------------~~~~----~~h~~~v~~~~~~--~~  170 (445)
T 2ovr_B          111 PKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKC-------------LRTL----VGHTGGVWSSQMR--DN  170 (445)
T ss_dssp             CEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCE-------------EEEC----CCCSSCEEEEEEE--TT
T ss_pred             eEEecccCCCcEE-EEEEcCCEEEEEECCCcEEEEECCCCcE-------------EEEE----cCCCCCEEEEEec--CC
Confidence            4678899987644 3566799999999999999999876532             1122    2356789999997  67


Q ss_pred             EEEEEeCCCeEEEEEcC-CceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecC
Q 008496          288 LLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR  366 (563)
Q Consensus       288 ~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~  366 (563)
                      +|++|+.||.|++|+.. +.....+.+|..+|.++.|+  ++.+++|+.|++|++||+.+++....+..|..++.++.| 
T Consensus       171 ~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~-  247 (445)
T 2ovr_B          171 IIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY-  247 (445)
T ss_dssp             EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE-
T ss_pred             EEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE-
Confidence            99999999999999975 56677889999999999995  578999999999999999999999999999999999999 


Q ss_pred             CCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEEE
Q 008496          367 NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTI  446 (563)
Q Consensus       367 ~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~  446 (563)
                      +...+++++.|+.|++|++....++..+.+|...|.+++|  ++.++++|+.|+.|++||+++++.+..+..|...+.++
T Consensus       248 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~  325 (445)
T 2ovr_B          248 DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGM  325 (445)
T ss_dssp             CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEE
T ss_pred             CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEE
Confidence            6678899999999999999999999999999999999999  78999999999999999999999999999999999999


Q ss_pred             EEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecC---CCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 008496          447 RWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNG---HREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEG  523 (563)
Q Consensus       447 ~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~---h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~  523 (563)
                      .+.+.           +|++|+.||.|++||+++++++..+.+   |..+|++++|+  +.+|++|+.||.|++||+.++
T Consensus       326 ~~~~~-----------~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~  392 (445)
T 2ovr_B          326 ELKDN-----------ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTG  392 (445)
T ss_dssp             EEETT-----------EEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTC
T ss_pred             EEeCC-----------EEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCC
Confidence            88542           789999999999999999999999876   88899999996  579999999999999999999


Q ss_pred             eeEEEE------ecCCCEEEEEEcCCCCEEEEEECCCe----EEEEEee
Q 008496          524 KIVKTY------TGNGGIFEVCWNKEGDKIAACFANHT----VCVLDFR  562 (563)
Q Consensus       524 ~~~~~~------~~~~~i~~l~w~~~g~~la~~~~~~~----v~v~~~~  562 (563)
                      +.+..+      ...+.|.+++|+|+|..||+|+.||+    +.||||+
T Consensus       393 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~  441 (445)
T 2ovr_B          393 EFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFD  441 (445)
T ss_dssp             CEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECC
T ss_pred             ceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECC
Confidence            998888      23456999999999999999999997    9999986

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=2.6e-40  Score=329.43  Aligned_cols=278  Identities=28%  Similarity=0.511  Sum_probs=238.5

Q ss_pred             CeEEEEECCCCCEEEEEeCCCeEEEEEcCCce---e-EeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCc--e
Q 008496          276 DVTTLDWNGEGTLLATGSYDGQARIWSTNGDL---K-CTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEE--W  349 (563)
Q Consensus       276 ~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~---~-~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~--~  349 (563)
                      .|.+++|+|+|++|++|+.||.|+||+..+..   . ....+|...|.+++|+|++++|++|+.|+++++||+.++.  .
T Consensus        18 ~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~   97 (345)
T 3fm0_A           18 RCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFEC   97 (345)
T ss_dssp             CEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEE
T ss_pred             cEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEE
Confidence            79999999999999999999999999986542   1 2236899999999999999999999999999999998764  4


Q ss_pred             eEEeeecccCeEEEecCCC-ceEEEEeCCCeEEEEEcCCCc---ceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEE
Q 008496          350 KQQFEFHSGPTLDVDWRNN-VSFATSSTDNMIYVCKIGENR---PIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIW  425 (563)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~i~~~~~~~~~---~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iw  425 (563)
                      ...+..|..++.++.|.++ ..+++++.|+.|++|++....   .+..+.+|...|.+++|+|++++|++|+.|++|++|
T Consensus        98 ~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w  177 (345)
T 3fm0_A           98 VTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLY  177 (345)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEE
T ss_pred             EEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEE
Confidence            6677889999999999754 578899999999999997653   456788999999999999999999999999999999


Q ss_pred             eCCCCc--eeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC---------------CeEEEEec
Q 008496          426 NMKQDK--YVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL---------------GKLLYSLN  488 (563)
Q Consensus       426 d~~~~~--~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~---------------~~~~~~~~  488 (563)
                      |..++.  +...+.+|...|++++|+|++.         +|++|+.|++|+|||...               .+++..+.
T Consensus       178 ~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~---------~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (345)
T 3fm0_A          178 REEEDDWVCCATLEGHESTVWSLAFDPSGQ---------RLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLS  248 (345)
T ss_dssp             EEETTEEEEEEEECCCSSCEEEEEECTTSS---------EEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEEC
T ss_pred             EecCCCEEEEEEecCCCCceEEEEECCCCC---------EEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEec
Confidence            998775  4467889999999999999875         799999999999999632               14455665


Q ss_pred             C-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCe--------eEEEE-e-cCCCEEEEEEcCCC-CEEEEEECCCeE
Q 008496          489 G-HREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGK--------IVKTY-T-GNGGIFEVCWNKEG-DKIAACFANHTV  556 (563)
Q Consensus       489 ~-h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~--------~~~~~-~-~~~~i~~l~w~~~g-~~la~~~~~~~v  556 (563)
                      + |...|++++|+|++.+||+++.|+.|++|+...+.        +.... . ....|.+++|+|++ ..||+|+.||+|
T Consensus       249 ~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v  328 (345)
T 3fm0_A          249 GFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEV  328 (345)
T ss_dssp             SSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCE
T ss_pred             CCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcE
Confidence            5 88899999999999999999999999999987542        11111 2 24579999999998 599999999999


Q ss_pred             EEEEee
Q 008496          557 CVLDFR  562 (563)
Q Consensus       557 ~v~~~~  562 (563)
                      .||+++
T Consensus       329 ~~W~~~  334 (345)
T 3fm0_A          329 AFWKYQ  334 (345)
T ss_dssp             EEEEEC
T ss_pred             EEEEec
Confidence            999985

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=2.1e-40  Score=361.58  Aligned_cols=293  Identities=25%  Similarity=0.443  Sum_probs=247.0

Q ss_pred             eEecCCCCceEEEEECCCC-CEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCC
Q 008496          209 TILEGHTSEVCACAWSPAG-SLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT  287 (563)
Q Consensus       209 ~~l~~h~~~V~~~~~sp~~-~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~  287 (563)
                      ..|++|++.|++++|+|++ .+|+|||.|++|+||++.......       . .....+    ..|...|++++|+|+|+
T Consensus       376 ~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~-------~-~~~~~~----~~h~~~v~~v~~s~~g~  443 (694)
T 3dm0_A          376 GTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAY-------G-VAQRRL----TGHSHFVEDVVLSSDGQ  443 (694)
T ss_dssp             EEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCS-------C-EEEEEE----ECCSSCEEEEEECTTSS
T ss_pred             hhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCccc-------c-ccccee----cCCCCcEEEEEECCCCC
Confidence            4688999999999999975 799999999999999987532110       0 111122    24567899999999999


Q ss_pred             EEEEEeCCCeEEEEEcC-CceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecC
Q 008496          288 LLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR  366 (563)
Q Consensus       288 ~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~  366 (563)
                      +|++|+.||.|+|||.. +.....+.+|..+|++++|+|++++|++|+.|++|++||+....... +             
T Consensus       444 ~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~-~-------------  509 (694)
T 3dm0_A          444 FALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYT-I-------------  509 (694)
T ss_dssp             EEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEE-E-------------
T ss_pred             EEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCccee-e-------------
Confidence            99999999999999976 45667889999999999999999999999999999999975432110 0             


Q ss_pred             CCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCC--CEEEEEeCCCcEEEEeCCCCceeeeecccCCCEE
Q 008496          367 NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTG--SLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIY  444 (563)
Q Consensus       367 ~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~--~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~  444 (563)
                                              .....+|...|.+++|+|++  .+|++|+.|++|++||+++.++...+.+|...|+
T Consensus       510 ------------------------~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~  565 (694)
T 3dm0_A          510 ------------------------SEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVS  565 (694)
T ss_dssp             ------------------------CSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEE
T ss_pred             ------------------------ccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEE
Confidence                                    01124688899999999987  6899999999999999999999999999999999


Q ss_pred             EEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCe
Q 008496          445 TIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGK  524 (563)
Q Consensus       445 ~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~  524 (563)
                      +++|+|++.         +|++|+.||+|+|||+++++++..+.. ...|.+++|+|++.+|++++ ++.|+|||+.+++
T Consensus       566 ~v~~spdg~---------~l~sg~~Dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~  634 (694)
T 3dm0_A          566 TVAVSPDGS---------LCASGGKDGVVLLWDLAEGKKLYSLEA-NSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKS  634 (694)
T ss_dssp             EEEECTTSS---------EEEEEETTSBCEEEETTTTEEEECCBC-SSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTE
T ss_pred             EEEEeCCCC---------EEEEEeCCCeEEEEECCCCceEEEecC-CCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCC
Confidence            999999875         799999999999999999999988874 46799999999999988876 4569999999999


Q ss_pred             eEEEEecC--------------------CCEEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496          525 IVKTYTGN--------------------GGIFEVCWNKEGDKIAACFANHTVCVLDFR  562 (563)
Q Consensus       525 ~~~~~~~~--------------------~~i~~l~w~~~g~~la~~~~~~~v~v~~~~  562 (563)
                      ++..+...                    ..+.+++|+|+|++|++|+.||.|+|||+.
T Consensus       635 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~  692 (694)
T 3dm0_A          635 IVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG  692 (694)
T ss_dssp             EEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred             ChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence            88776421                    126789999999999999999999999985

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=6.1e-40  Score=352.54  Aligned_cols=328  Identities=18%  Similarity=0.298  Sum_probs=273.0

Q ss_pred             ceeEecCCCCceEEEEECCCCC-EEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCC---CeEEEEE
Q 008496          207 DVTILEGHTSEVCACAWSPAGS-LLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSK---DVTTLDW  282 (563)
Q Consensus       207 ~~~~l~~h~~~V~~~~~sp~~~-~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~V~~l~~  282 (563)
                      .+..+.+|...|++++|+|+++ +|++|+.|+.+++|++.++..             ...+.    .+..   .|++++|
T Consensus       152 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~-------------~~~~~----~~~~~~~~v~~~~~  214 (615)
T 1pgu_A          152 SLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKF-------------SASDR----THHKQGSFVRDVEF  214 (615)
T ss_dssp             EEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEE-------------EEEEC----SSSCTTCCEEEEEE
T ss_pred             cceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcce-------------eeeec----ccCCCCceEEEEEE
Confidence            4567789999999999999997 899999999999999765321             11222    2344   7999999


Q ss_pred             CCC-CCEEEEEeCCCeEEEEEcC-CceeEee-c---cCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeec
Q 008496          283 NGE-GTLLATGSYDGQARIWSTN-GDLKCTL-S---KHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFH  356 (563)
Q Consensus       283 s~~-g~~l~sg~~dg~i~vw~~~-~~~~~~~-~---~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~  356 (563)
                      +|+ +++|++|+.||.|++|+.. +.....+ .   .|..+|.+++|+ ++.+|++++.|++|++||+++++....+..+
T Consensus       215 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~  293 (615)
T 1pgu_A          215 SPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLD  293 (615)
T ss_dssp             CSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred             CCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCC
Confidence            999 9999999999999999975 5566666 5   899999999999 9999999999999999999999988888776


Q ss_pred             ----ccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCC-----------------------
Q 008496          357 ----SGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT-----------------------  409 (563)
Q Consensus       357 ----~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~-----------------------  409 (563)
                          ...+..+.|.+...+++++.++.|++|++....++..+.+|.+.|.+++| |+                       
T Consensus       294 ~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~l~~~~~dg~i~~w~~~~~~~~~~  372 (615)
T 1pgu_A          294 KQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV-NPLISGSYDGRIMEWSSSSMHQDHS  372 (615)
T ss_dssp             TTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET-TTTEEEETTSCEEETTTTEEECCCC
T ss_pred             CCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cCcEEECCCCeEEEEEchhhcCccc
Confidence                35667777777788999999999999999877777777666655555554 32                       


Q ss_pred             --------------------------------------------------------------------------------
Q 008496          410 --------------------------------------------------------------------------------  409 (563)
Q Consensus       410 --------------------------------------------------------------------------------  409 (563)
                                                                                                      
T Consensus       373 ~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  452 (615)
T 1pgu_A          373 NLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAV  452 (615)
T ss_dssp             SCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEE
T ss_pred             CceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEE
Confidence                                                                                            


Q ss_pred             ---CCEEEEEeC-CCcEEEEeCCCCcee-eeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEE
Q 008496          410 ---GSLLASCSD-DVTAKIWNMKQDKYV-HDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLL  484 (563)
Q Consensus       410 ---~~~las~s~-dg~i~iwd~~~~~~~-~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~  484 (563)
                         +++|++++. |+.|++||+.++... ..+..|...|++++|+|++.         +|++++.||.|++||+.+++++
T Consensus       453 ~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~---------~l~~~~~dg~i~iw~~~~~~~~  523 (615)
T 1pgu_A          453 SLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSET---------YIAAGDVMGKILLYDLQSREVK  523 (615)
T ss_dssp             EECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSS---------EEEEEETTSCEEEEETTTTEEE
T ss_pred             EEcCCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCC---------EEEEcCCCCeEEEeeCCCCcce
Confidence               334444444 555555555554443 55667889999999999885         7999999999999999999999


Q ss_pred             EEecC-CCCCEEEEEEcC----------CCCEEEEEeCCCcEEEEecCCC-eeEEEEec-CCCEEEEEEcCCCCEEEEEE
Q 008496          485 YSLNG-HREPVYSLAFSP----------TGEYLASGSLDKSMHIWSLKEG-KIVKTYTG-NGGIFEVCWNKEGDKIAACF  551 (563)
Q Consensus       485 ~~~~~-h~~~i~~l~~sp----------dg~~lasgs~dg~v~iw~~~~~-~~~~~~~~-~~~i~~l~w~~~g~~la~~~  551 (563)
                      ..+.+ |..+|++++|+|          ++++||+|+.||.|++|++.++ +++..+.+ ...|.+++|+|+|+ |++++
T Consensus       524 ~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-l~s~~  602 (615)
T 1pgu_A          524 TSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSG  602 (615)
T ss_dssp             ECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTE-EEEEE
T ss_pred             eEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcCccceEEEEEcCCCC-eEEec
Confidence            99988 999999999999          9999999999999999999998 77777765 45799999999999 99999


Q ss_pred             CCCeEEEEEeeC
Q 008496          552 ANHTVCVLDFRM  563 (563)
Q Consensus       552 ~~~~v~v~~~~~  563 (563)
                      .|+.|.|||+..
T Consensus       603 ~d~~v~iw~~~~  614 (615)
T 1pgu_A          603 ADACIKRWNVVL  614 (615)
T ss_dssp             TTSCEEEEEEC-
T ss_pred             CCceEEEEeeec
Confidence            999999999863

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=4.1e-39  Score=316.12  Aligned_cols=282  Identities=26%  Similarity=0.483  Sum_probs=253.8

Q ss_pred             cCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcC-CceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCcee
Q 008496          272 EKSKDVTTLDWNGEGTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWK  350 (563)
Q Consensus       272 ~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~  350 (563)
                      .|...|++++|+|+|++|++|+.||.|++|+.. +.....+.+|..+|.+++|+|++++|++|+.|++|++||+.+++..
T Consensus        21 gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~  100 (312)
T 4ery_A           21 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCL  100 (312)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE
T ss_pred             ccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEE
Confidence            456789999999999999999999999999974 5677788999999999999999999999999999999999999999


Q ss_pred             EEeeecccCeEEEecCCC-ceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCC
Q 008496          351 QQFEFHSGPTLDVDWRNN-VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQ  429 (563)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~  429 (563)
                      ..+..|...+.++.|.++ ..+++++.|+.|++|++...+.+..+.+|...|.+++|+|++++|++|+.|+.|++||+++
T Consensus       101 ~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~  180 (312)
T 4ery_A          101 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS  180 (312)
T ss_dssp             EEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred             EEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Confidence            999999999999999754 5778999999999999999999999999999999999999999999999999999999999


Q ss_pred             Cceeeeec-ccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEE--EEE-cCCCCE
Q 008496          430 DKYVHDLR-EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYS--LAF-SPTGEY  505 (563)
Q Consensus       430 ~~~~~~~~-~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~--l~~-spdg~~  505 (563)
                      ++.+..+. .+...+..++|+|++.         +|++++.||.|++||+++++++..+.+|...+.+  ..| .+++.+
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~---------~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (312)
T 4ery_A          181 GQCLKTLIDDDNPPVSFVKFSPNGK---------YILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKW  251 (312)
T ss_dssp             CCEEEEECCSSCCCEEEEEECTTSS---------EEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCE
T ss_pred             CceeeEEeccCCCceEEEEECCCCC---------EEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcE
Confidence            88877654 4567899999999875         7899999999999999999999999888765332  234 467899


Q ss_pred             EEEEeCCCcEEEEecCCCeeEEEEecC-CCEEEEEEcCCCCEEEEEE--CCCeEEEEEee
Q 008496          506 LASGSLDKSMHIWSLKEGKIVKTYTGN-GGIFEVCWNKEGDKIAACF--ANHTVCVLDFR  562 (563)
Q Consensus       506 lasgs~dg~v~iw~~~~~~~~~~~~~~-~~i~~l~w~~~g~~la~~~--~~~~v~v~~~~  562 (563)
                      |++|+.||.|++||+.+++++..+.++ ..|..++|+|+++.||+++  .|++|.||+..
T Consensus       252 l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d  311 (312)
T 4ery_A          252 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD  311 (312)
T ss_dssp             EEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred             EEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence            999999999999999999999998764 5689999999999999987  58999999864

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.5e-39  Score=324.43  Aligned_cols=297  Identities=19%  Similarity=0.320  Sum_probs=255.7

Q ss_pred             eeEecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCC
Q 008496          208 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT  287 (563)
Q Consensus       208 ~~~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~  287 (563)
                      ...|.+|...|++++|+|++++|++|+.|+.|++|++.++..             ...+    ..+...|++++|+|+++
T Consensus        25 ~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~-------------~~~~----~~h~~~v~~~~~~~~~~   87 (369)
T 3zwl_B           25 AIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGER-------------LGTL----DGHTGTIWSIDVDCFTK   87 (369)
T ss_dssp             EEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCE-------------EEEE----CCCSSCEEEEEECTTSS
T ss_pred             cEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchh-------------hhhh----hhcCCcEEEEEEcCCCC
Confidence            356899999999999999999999999999999999876532             1111    23467899999999999


Q ss_pred             EEEEEeCCCeEEEEEcCC-ceeEeeccCCCCEEEEEeCCCCCEEEEeeCC-----CcEEEEECCCCceeEEeeecccCeE
Q 008496          288 LLATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCD-----KTAIVWDVKTEEWKQQFEFHSGPTL  361 (563)
Q Consensus       288 ~l~sg~~dg~i~vw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D-----~~v~iwd~~~~~~~~~~~~~~~~~~  361 (563)
                      +|++++.||.|++|+... .....+. |..+|.+++|+|++++|++++.+     +.|++||+........+..      
T Consensus        88 ~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~------  160 (369)
T 3zwl_B           88 YCVTGSADYSIKLWDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTK------  160 (369)
T ss_dssp             EEEEEETTTEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEE------
T ss_pred             EEEEEeCCCeEEEEECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecc------
Confidence            999999999999999864 4444555 89999999999999999999999     9999999876543221111      


Q ss_pred             EEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCc--ceeEEEECCCCCEEEEEeCCCcEEEEeCCC-Cceeeeecc
Q 008496          362 DVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQG--EVNCVKWDPTGSLLASCSDDVTAKIWNMKQ-DKYVHDLRE  438 (563)
Q Consensus       362 ~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~--~i~~~~~~~~~~~las~s~dg~i~iwd~~~-~~~~~~~~~  438 (563)
                                              ....++..+.+|.+  .+.+++|+|++++|++++.||.|++||+.+ ...+..+..
T Consensus       161 ------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  216 (369)
T 3zwl_B          161 ------------------------VSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDL  216 (369)
T ss_dssp             ------------------------ECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEEC
T ss_pred             ------------------------cccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEec
Confidence                                    11223445556766  899999999999999999999999999998 778888899


Q ss_pred             cCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCC-----
Q 008496          439 HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDK-----  513 (563)
Q Consensus       439 ~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg-----  513 (563)
                      |...|.+++|+|++.         +|++++.||.|++||+++++.+..+. +..++.+++|+|+++++++++.++     
T Consensus       217 ~~~~v~~~~~~~~~~---------~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  286 (369)
T 3zwl_B          217 HEKSISDMQFSPDLT---------YFITSSRDTNSFLVDVSTLQVLKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVT  286 (369)
T ss_dssp             CSSCEEEEEECTTSS---------EEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECCC-----
T ss_pred             CCCceeEEEECCCCC---------EEEEecCCceEEEEECCCCceeeeec-CCCCceeEEecCCCceEEEeecCCCceEE
Confidence            999999999999875         78999999999999999999988887 778999999999999999999988     


Q ss_pred             ---------cEEEEecCCCeeEEEEec-CCCEEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496          514 ---------SMHIWSLKEGKIVKTYTG-NGGIFEVCWNKEGDKIAACFANHTVCVLDFR  562 (563)
Q Consensus       514 ---------~v~iw~~~~~~~~~~~~~-~~~i~~l~w~~~g~~la~~~~~~~v~v~~~~  562 (563)
                               .|++||+.+++.+..+.+ ...|.+++|+|+|++|++|+.||.|.||+++
T Consensus       287 ~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~  345 (369)
T 3zwl_B          287 TTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFE  345 (369)
T ss_dssp             --------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEEC
T ss_pred             EEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcCCCeEEEEECc
Confidence                     899999999999988875 4679999999999999999999999999985

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=1.1e-39  Score=324.80  Aligned_cols=279  Identities=22%  Similarity=0.357  Sum_probs=236.7

Q ss_pred             cCCCCeEEEEE-----CC-CCCEEEEEeCCCeEEEEEcCC--------ceeEeeccCCCCEEEEEeCCCCCEEEEeeCCC
Q 008496          272 EKSKDVTTLDW-----NG-EGTLLATGSYDGQARIWSTNG--------DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDK  337 (563)
Q Consensus       272 ~~~~~V~~l~~-----s~-~g~~l~sg~~dg~i~vw~~~~--------~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~  337 (563)
                      .|...|++++|     ++ ++.+|++|+.|+.|++|+...        .....+.+|..+|.+++|+|++.+|++|+.|+
T Consensus        19 gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~   98 (343)
T 2xzm_R           19 GHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDK   98 (343)
T ss_dssp             CCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTS
T ss_pred             cchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCCC
Confidence            46778999999     77 999999999999999999753        23457889999999999999999999999999


Q ss_pred             cEEEEECCCCceeEEeeecccCeEEEecCCC-ceEEEEeCCCeEEEEEcCCCcceee--ecCCCcceeEEEECCCC----
Q 008496          338 TAIVWDVKTEEWKQQFEFHSGPTLDVDWRNN-VSFATSSTDNMIYVCKIGENRPIKT--FAGHQGEVNCVKWDPTG----  410 (563)
Q Consensus       338 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~i~~~~~~~~~~~~~--~~~h~~~i~~~~~~~~~----  410 (563)
                      +|++||+++++....+..|...+.++.|.++ ..+++++.|+.|++|++........  ..+|...|.+++|+|++    
T Consensus        99 ~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  178 (343)
T 2xzm_R           99 TLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSAN  178 (343)
T ss_dssp             EEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEEECCCCCSCS
T ss_pred             cEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceeeeeeecccccccc
Confidence            9999999999999999999999999999754 5788999999999999974432221  23788999999999987    


Q ss_pred             ------CEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC-CeE
Q 008496          411 ------SLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL-GKL  483 (563)
Q Consensus       411 ------~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~-~~~  483 (563)
                            .+|++++.|++|++|| ........+..|...|.+++|+|++.         +|++|+.||.|++||+.. ...
T Consensus       179 ~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~s~~g~---------~l~sgs~dg~v~iwd~~~~~~~  248 (343)
T 2xzm_R          179 KVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGK---------YIATGGKDKKLLIWDILNLTYP  248 (343)
T ss_dssp             CCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSSCEEEEEECTTSS---------EEEEEETTCEEEEEESSCCSSC
T ss_pred             ccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCccccceEEEECCCCC---------EEEEEcCCCeEEEEECCCCccc
Confidence                  7899999999999999 45566778889999999999999886         799999999999999953 333


Q ss_pred             EEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEE--EEe------------cCCCEEEEEEcCCCCEEEE
Q 008496          484 LYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVK--TYT------------GNGGIFEVCWNKEGDKIAA  549 (563)
Q Consensus       484 ~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~--~~~------------~~~~i~~l~w~~~g~~la~  549 (563)
                      ...+. +...|.+++|+|++++|++|+ |+.|++|++.+++...  .+.            ....+.+++|+|+|++||+
T Consensus       249 ~~~~~-~~~~v~~v~~sp~~~~la~~~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s  326 (343)
T 2xzm_R          249 QREFD-AGSTINQIAFNPKLQWVAVGT-DQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFA  326 (343)
T ss_dssp             SEEEE-CSSCEEEEEECSSSCEEEEEE-SSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEE
T ss_pred             ceeec-CCCcEEEEEECCCCCEEEEEC-CCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEE
Confidence            33443 456799999999999887654 7789999998876443  332            2245899999999999999


Q ss_pred             EECCCeEEEEEee
Q 008496          550 CFANHTVCVLDFR  562 (563)
Q Consensus       550 ~~~~~~v~v~~~~  562 (563)
                      |+.||.|.||++.
T Consensus       327 g~~Dg~v~~w~~~  339 (343)
T 2xzm_R          327 GFTDGVIRTFSFE  339 (343)
T ss_dssp             EETTSEEEEEEEE
T ss_pred             ecCCceEEEEEEE
Confidence            9999999999985

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=2e-40  Score=339.43  Aligned_cols=319  Identities=13%  Similarity=0.182  Sum_probs=262.8

Q ss_pred             ceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEEeCCC
Q 008496          217 EVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDG  296 (563)
Q Consensus       217 ~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~dg  296 (563)
                      .+++++|+|++++|++|+.|+.+++|++.++......                  .....+....|++++++|++|+.||
T Consensus        58 ~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~l~~~~~dg  119 (420)
T 3vl1_A           58 AGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKML------------------KRADYTAVDTAKLQMRRFILGTTEG  119 (420)
T ss_dssp             CCTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTS------------------CSCCEEEEEEECSSSCEEEEEETTS
T ss_pred             cccceeeeecCCeEEEEEcCCcEEEEEecccceeeEE------------------ecCCceEEEEEecCCCEEEEEECCC
Confidence            3557899999999999999999999998754321110                  0113345557899999999999999


Q ss_pred             eEEEEEcCCc-eeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecCCC-ceEEEE
Q 008496          297 QARIWSTNGD-LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNN-VSFATS  374 (563)
Q Consensus       297 ~i~vw~~~~~-~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  374 (563)
                      .|++|+.... ....+.+|.++|++++|+|++++|++|+.|++|++||+.+++....+..|...+.++.|.++ ..++++
T Consensus       120 ~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~  199 (420)
T 3vl1_A          120 DIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSA  199 (420)
T ss_dssp             CEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEE
T ss_pred             CEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEE
Confidence            9999998754 44556799999999999999999999999999999999999999999999999999999754 568899


Q ss_pred             eCCCeEEEEEcCCCcceeeecCC---C---------------------cceeEEEECCCCCEEEEEeCCCcEEEEeCCCC
Q 008496          375 STDNMIYVCKIGENRPIKTFAGH---Q---------------------GEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD  430 (563)
Q Consensus       375 ~~d~~i~~~~~~~~~~~~~~~~h---~---------------------~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~  430 (563)
                      +.|+.|++|++...+++..+..|   .                     ..+.+++|+|++++|++|+.||.|++||++++
T Consensus       200 ~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~  279 (420)
T 3vl1_A          200 SLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSK  279 (420)
T ss_dssp             ETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTC
T ss_pred             cCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCC
Confidence            99999999999999888888753   2                     34445556899999999999999999999998


Q ss_pred             ceeeeec-ccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeE-EEEecC-CCCCEEEEEEcCCCCEEE
Q 008496          431 KYVHDLR-EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKL-LYSLNG-HREPVYSLAFSPTGEYLA  507 (563)
Q Consensus       431 ~~~~~~~-~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~-~~~~~~-h~~~i~~l~~spdg~~la  507 (563)
                      +.+..+. .|...|.+++|+|++.        .+|++|+.||.|++||+++++. +..+.+ |..+|.++.| |++++|+
T Consensus       280 ~~~~~~~~~~~~~v~~~~~~~~~~--------~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~  350 (420)
T 3vl1_A          280 EQTIQLPSKFTCSCNSLTVDGNNA--------NYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFV  350 (420)
T ss_dssp             CEEEEECCTTSSCEEEEEECSSCT--------TEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEE
T ss_pred             ceeEEcccccCCCceeEEEeCCCC--------CEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEE
Confidence            8776664 5788999999999874        2789999999999999998754 566665 6778888855 5788999


Q ss_pred             EEeCCCcEEEEecCCCe----------eEEEEecCCCEEEEEEcCCCC---EEEEEECCCeEEEEEee
Q 008496          508 SGSLDKSMHIWSLKEGK----------IVKTYTGNGGIFEVCWNKEGD---KIAACFANHTVCVLDFR  562 (563)
Q Consensus       508 sgs~dg~v~iw~~~~~~----------~~~~~~~~~~i~~l~w~~~g~---~la~~~~~~~v~v~~~~  562 (563)
                      +|+.||.|++|++.+..          ........+.|.+++|+|+|+   .|++++.+|.+.+|++.
T Consensus       351 s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~  418 (420)
T 3vl1_A          351 SSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLS  418 (420)
T ss_dssp             EETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESC
T ss_pred             EecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEecc
Confidence            99999999999987632          112223356789999999999   77777789999999863

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.9e-40  Score=367.84  Aligned_cols=332  Identities=14%  Similarity=0.194  Sum_probs=260.4

Q ss_pred             EecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEE
Q 008496          210 ILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLL  289 (563)
Q Consensus       210 ~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l  289 (563)
                      ...+|...|++++|+|++++||+|+.||+|+||+......             ...     ..+...|++++|+| |++|
T Consensus        12 ~~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~-------------~~~-----~~~~~~V~~l~fsp-g~~L   72 (902)
T 2oaj_A           12 NKYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEV-------------VIK-----LEDRSAIKEMRFVK-GIYL   72 (902)
T ss_dssp             EEEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEE-------------EEE-----CSSCCCEEEEEEET-TTEE
T ss_pred             cccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEE-------------EEE-----cCCCCCEEEEEEcC-CCEE
Confidence            3468999999999999999999999999999999754211             111     12356799999999 8899


Q ss_pred             EEEeCCCeEEEEEcC-CceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeE-----------Eeeecc
Q 008496          290 ATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQ-----------QFEFHS  357 (563)
Q Consensus       290 ~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~-----------~~~~~~  357 (563)
                      ++++.|+.|++||.. +.....+. |.+.|++++|+|++++|++|+.||+|++||+.++....           .+..|.
T Consensus        73 ~S~s~D~~v~lWd~~~~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~  151 (902)
T 2oaj_A           73 VVINAKDTVYVLSLYSQKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARL  151 (902)
T ss_dssp             EEEETTCEEEEEETTTCSEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCC
T ss_pred             EEEECcCeEEEEECCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCC
Confidence            999999999999986 45555564 77899999999999999999999999999999887531           223467


Q ss_pred             cCeEEEecCCC--ceEEEEeCCCeEEEEEcCCCcceeeecCC------------------CcceeEEEECCCCCEEEEEe
Q 008496          358 GPTLDVDWRNN--VSFATSSTDNMIYVCKIGENRPIKTFAGH------------------QGEVNCVKWDPTGSLLASCS  417 (563)
Q Consensus       358 ~~~~~~~~~~~--~~~~~~~~d~~i~~~~~~~~~~~~~~~~h------------------~~~i~~~~~~~~~~~las~s  417 (563)
                      +++.++.|.++  ..+++++.|+.| +|++...+++..+.+|                  ...|++++|+|+|++||+|+
T Consensus       152 ~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs  230 (902)
T 2oaj_A          152 SPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIH  230 (902)
T ss_dssp             CCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEE
T ss_pred             CCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEE
Confidence            78999999874  578899999999 9999999888888766                  56799999999999999999


Q ss_pred             CCCcEEEEeCCCCceeee--ec---c-------------cCCCEEEEEEccCCC---------C-CC-------------
Q 008496          418 DDVTAKIWNMKQDKYVHD--LR---E-------------HSKEIYTIRWSPTGS---------G-TN-------------  456 (563)
Q Consensus       418 ~dg~i~iwd~~~~~~~~~--~~---~-------------~~~~i~~~~~~p~~~---------~-~~-------------  456 (563)
                      .||+|++||+++++++..  +.   .             |...|++++|+|...         + ..             
T Consensus       231 ~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~  310 (902)
T 2oaj_A          231 EDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDL  310 (902)
T ss_dssp             TTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEE
T ss_pred             CCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEec
Confidence            999999999998887642  21   1             345799999954210         0 00             


Q ss_pred             --------------------------------------------CC-----CCcEEEEEEeCCCeEEEEeCCCCeEEEE-
Q 008496          457 --------------------------------------------NP-----NQQLILASASFDSTVKLWDVELGKLLYS-  486 (563)
Q Consensus       457 --------------------------------------------~~-----~~~~~l~s~s~dg~i~iwd~~~~~~~~~-  486 (563)
                                                                  .|     .+...+++++.||.|++||+.++..... 
T Consensus       311 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~  390 (902)
T 2oaj_A          311 GYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKA  390 (902)
T ss_dssp             EECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCG
T ss_pred             CCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCccccc
Confidence                                                        00     0011456777889999999877643321 


Q ss_pred             ----------------------------------------ecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeE
Q 008496          487 ----------------------------------------LNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIV  526 (563)
Q Consensus       487 ----------------------------------------~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~  526 (563)
                                                              +.+|...+.+++|+|||++||+|+.|++|++||+.++.+.
T Consensus       391 ~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~  470 (902)
T 2oaj_A          391 SLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQ  470 (902)
T ss_dssp             GGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTT
T ss_pred             ccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCcccc
Confidence                                                    2334444555667899999999999999999999887531


Q ss_pred             --EEE----------ecCCCEEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496          527 --KTY----------TGNGGIFEVCWNKEGDKIAACFANHTVCVLDFR  562 (563)
Q Consensus       527 --~~~----------~~~~~i~~l~w~~~g~~la~~~~~~~v~v~~~~  562 (563)
                        ..+          .....|.+++|+|||+.||+|+.|++|.|||+.
T Consensus       471 ~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~  518 (902)
T 2oaj_A          471 DNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYE  518 (902)
T ss_dssp             TTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEE
T ss_pred             CCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEec
Confidence              111          123579999999999999999999999999985

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=6e-40  Score=331.74  Aligned_cols=285  Identities=15%  Similarity=0.249  Sum_probs=238.0

Q ss_pred             eeEecCCCCceEEEEECCCC-CEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECC-C
Q 008496          208 VTILEGHTSEVCACAWSPAG-SLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG-E  285 (563)
Q Consensus       208 ~~~l~~h~~~V~~~~~sp~~-~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~-~  285 (563)
                      ...+.+|...|++++|+|++ ++||+|+.|+.|+||++.++...          ..+     ....+...|++++|+| +
T Consensus        66 ~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~----------~~~-----~~~~h~~~v~~~~~~~~~  130 (383)
T 3ei3_B           66 HRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKT----------SFI-----QGMGPGDAITGMKFNQFN  130 (383)
T ss_dssp             EEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCE----------EEE-----CCCSTTCBEEEEEEETTE
T ss_pred             EEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccc----------eee-----ecCCcCCceeEEEeCCCC
Confidence            45678999999999999998 99999999999999999764321          010     1123567899999999 7


Q ss_pred             CCEEEEEeCCCeEEEEEcCCceeEeeccC---CCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEE
Q 008496          286 GTLLATGSYDGQARIWSTNGDLKCTLSKH---KGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLD  362 (563)
Q Consensus       286 g~~l~sg~~dg~i~vw~~~~~~~~~~~~h---~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~  362 (563)
                      +.+|++|+.||.|++|+..+.....+..|   ...|.+++|+|++++|++|+.|+.|++||++ +.              
T Consensus       131 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~--------------  195 (383)
T 3ei3_B          131 TNQLFVSSIRGATTLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD-GH--------------  195 (383)
T ss_dssp             EEEEEEEETTTEEEEEETTSCEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT-SC--------------
T ss_pred             CCEEEEEeCCCEEEEEECCCCceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC-CC--------------
Confidence            89999999999999999988766666544   4889999999999999999999999999984 22              


Q ss_pred             EecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCC-EEEEEeCCCcEEEEeCCC----Cceeeeec
Q 008496          363 VDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGS-LLASCSDDVTAKIWNMKQ----DKYVHDLR  437 (563)
Q Consensus       363 ~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~-~las~s~dg~i~iwd~~~----~~~~~~~~  437 (563)
                                                 ++..+.+|.+.|.+++|+|+++ +|++|+.|+.|++||+++    ..++..+ 
T Consensus       196 ---------------------------~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-  247 (383)
T 3ei3_B          196 ---------------------------EIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-  247 (383)
T ss_dssp             ---------------------------EEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-
T ss_pred             ---------------------------EEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-
Confidence                                       2234567889999999999999 999999999999999987    5556555 


Q ss_pred             ccCCCEEEEEEcc-CCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCC-----------------CCEEEEEE
Q 008496          438 EHSKEIYTIRWSP-TGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHR-----------------EPVYSLAF  499 (563)
Q Consensus       438 ~~~~~i~~~~~~p-~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~-----------------~~i~~l~~  499 (563)
                      .|...|++++|+| ++.         +|++++.|+.|++||+++++.+..+.+|.                 ..+..++|
T Consensus       248 ~~~~~v~~~~~s~~~~~---------~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~  318 (383)
T 3ei3_B          248 PHEKPVNAAYFNPTDST---------KLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGR  318 (383)
T ss_dssp             ECSSCEEEEEECTTTSC---------EEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEEC
T ss_pred             cCCCceEEEEEcCCCCC---------EEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEe
Confidence            7999999999999 775         78999999999999999877665555442                 34555777


Q ss_pred             cCCCCEEEEEeCCCcEEEEecCCCeeEEEEec---CCCEEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496          500 SPTGEYLASGSLDKSMHIWSLKEGKIVKTYTG---NGGIFEVCWNKEGDKIAACFANHTVCVLDFR  562 (563)
Q Consensus       500 spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~---~~~i~~l~w~~~g~~la~~~~~~~v~v~~~~  562 (563)
                      +|||++  +|+.||.|+|||+.+++++..+.+   .+.+..++|+|+|+.||+|+ |+.|.|||++
T Consensus       319 s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~  381 (383)
T 3ei3_B          319 YPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRE  381 (383)
T ss_dssp             BCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC
T ss_pred             cCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEecC
Confidence            788777  788999999999999999999875   33456679999999999996 8999999985

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=4.1e-39  Score=346.11  Aligned_cols=345  Identities=17%  Similarity=0.261  Sum_probs=281.4

Q ss_pred             CceeEecCCCCc-eEEEEECC--CCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEE
Q 008496          206 SDVTILEGHTSE-VCACAWSP--AGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDW  282 (563)
Q Consensus       206 ~~~~~l~~h~~~-V~~~~~sp--~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~  282 (563)
                      .....+.+|... |++++|+|  ++++||+|+.||.|++|++.++....     .........+    ..+...|.+++|
T Consensus        54 ~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~-----~~~~~~~~~~----~~~~~~v~~~~~  124 (615)
T 1pgu_A           54 PPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESN-----SVEVNVKSEF----QVLAGPISDISW  124 (615)
T ss_dssp             CSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGT-----EEEEEEEEEE----ECCSSCEEEEEE
T ss_pred             ccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccc-----cccccccchh----hcccccEEEEEE
Confidence            356788999999 99999999  99999999999999999985431000     0001111112    234578999999


Q ss_pred             CCCCCEEEEEeCC----CeEEEEEcCCceeEeeccCCCCEEEEEeCCCCC-EEEEeeCCCcEEEEECCCCceeEEeeecc
Q 008496          283 NGEGTLLATGSYD----GQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGD-YLLTGSCDKTAIVWDVKTEEWKQQFEFHS  357 (563)
Q Consensus       283 s~~g~~l~sg~~d----g~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~-~l~s~s~D~~v~iwd~~~~~~~~~~~~~~  357 (563)
                      +|+|++|++++.+    +.|++|+ .+.....+.+|...|.+++|+|++. .|++++.|+.|++||+.+++....+..|.
T Consensus       125 s~~~~~l~~~~~~~~~~~~v~~~d-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~  203 (615)
T 1pgu_A          125 DFEGRRLCVVGEGRDNFGVFISWD-SGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHH  203 (615)
T ss_dssp             CTTSSEEEEEECCSSCSEEEEETT-TCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSS
T ss_pred             eCCCCEEEEeccCCCCccEEEEEE-CCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccC
Confidence            9999999999988    7999999 5667778899999999999999998 79999999999999999999999998888


Q ss_pred             c---CeEEEecCCC--ceEEEEeCCCeEEEEEcCCCcceeee-c---CCCcceeEEEECCCCCEEEEEeCCCcEEEEeCC
Q 008496          358 G---PTLDVDWRNN--VSFATSSTDNMIYVCKIGENRPIKTF-A---GHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMK  428 (563)
Q Consensus       358 ~---~~~~~~~~~~--~~~~~~~~d~~i~~~~~~~~~~~~~~-~---~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~  428 (563)
                      .   .+.++.|.++  ..+++++.|+.|++|++...+++..+ .   +|...|.+++|+ ++++|++++.|+.|++||+.
T Consensus       204 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~  282 (615)
T 1pgu_A          204 KQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVT  282 (615)
T ss_dssp             CTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETT
T ss_pred             CCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECC
Confidence            8   8999999765  56788999999999999999998888 6   899999999999 99999999999999999998


Q ss_pred             CCceeeeec---------------------------------------------ccCCCEEEEEEccC------------
Q 008496          429 QDKYVHDLR---------------------------------------------EHSKEIYTIRWSPT------------  451 (563)
Q Consensus       429 ~~~~~~~~~---------------------------------------------~~~~~i~~~~~~p~------------  451 (563)
                      +++.+..+.                                             .|...|.+++| |+            
T Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~l~~~~~dg~i~~  361 (615)
T 1pgu_A          283 TSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV-NPLISGSYDGRIME  361 (615)
T ss_dssp             TTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET-TTTEEEETTSCEEE
T ss_pred             CCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cCcEEECCCCeEEE
Confidence            765443332                                             33344444444 22            


Q ss_pred             ---------------------CCCC-----------CC----------------C-------------------CC----
Q 008496          452 ---------------------GSGT-----------NN----------------P-------------------NQ----  460 (563)
Q Consensus       452 ---------------------~~~~-----------~~----------------~-------------------~~----  460 (563)
                                           +...           .+                |                   ..    
T Consensus       362 w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~  441 (615)
T 1pgu_A          362 WSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIK  441 (615)
T ss_dssp             TTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEE
T ss_pred             EEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceee
Confidence                                 1100           00                0                   00    


Q ss_pred             --------------cEEEEEEeC-CCeEEEEeCCCCeEE-EEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCe
Q 008496          461 --------------QLILASASF-DSTVKLWDVELGKLL-YSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGK  524 (563)
Q Consensus       461 --------------~~~l~s~s~-dg~i~iwd~~~~~~~-~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~  524 (563)
                                    ..+|++++. ||.|++||+..++.. ..+.+|..+|++++|+|+|++|++|+.||.|++|++.+++
T Consensus       442 ~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~  521 (615)
T 1pgu_A          442 SVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSRE  521 (615)
T ss_dssp             EEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE
T ss_pred             ecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCc
Confidence                          125677777 888888888876655 6677899999999999999999999999999999999999


Q ss_pred             eEEEEe--cCCCEEEEEEcC----------CCCEEEEEECCCeEEEEEee
Q 008496          525 IVKTYT--GNGGIFEVCWNK----------EGDKIAACFANHTVCVLDFR  562 (563)
Q Consensus       525 ~~~~~~--~~~~i~~l~w~~----------~g~~la~~~~~~~v~v~~~~  562 (563)
                      ++..+.  ....|.+++|+|          +|++||+|+.|+.|.|||++
T Consensus       522 ~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~  571 (615)
T 1pgu_A          522 VKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVK  571 (615)
T ss_dssp             EEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESS
T ss_pred             ceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECC
Confidence            988876  456799999999          99999999999999999975

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=6.9e-39  Score=332.63  Aligned_cols=317  Identities=23%  Similarity=0.363  Sum_probs=265.0

Q ss_pred             eeEecCCCCce-EEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCC
Q 008496          208 VTILEGHTSEV-CACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG  286 (563)
Q Consensus       208 ~~~l~~h~~~V-~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g  286 (563)
                      ...+.+|...| .+++|  ++++|++|+.||+|++||+.++..             +..+    ..+...|++++|++++
T Consensus       114 ~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~-------------~~~~----~~h~~~V~~l~~~~~~  174 (464)
T 3v7d_B          114 RTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKF-------------LLQL----SGHDGGVWALKYAHGG  174 (464)
T ss_dssp             EEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEE-------------EEEE----CCCSSCEEEEEECSTT
T ss_pred             eEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcE-------------EEEE----eCCCcCEEEEEEcCCC
Confidence            45788999886 55555  678999999999999999876531             1122    2456789999999988


Q ss_pred             CEEEEEeCCCeEEEEEcC-CceeEeeccCCCCEEEEEeC--CCCCEEEEeeCCCcEEEEECCCCce--------------
Q 008496          287 TLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWN--KKGDYLLTGSCDKTAIVWDVKTEEW--------------  349 (563)
Q Consensus       287 ~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~--~~~~~l~s~s~D~~v~iwd~~~~~~--------------  349 (563)
                       +|++|+.||.|++|+.. +.....+.+|.++|.+++|+  +++.+|++|+.|++|++||+.++..              
T Consensus       175 -~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~  253 (464)
T 3v7d_B          175 -ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVF  253 (464)
T ss_dssp             -EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEE
T ss_pred             -EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEe
Confidence             99999999999999976 55677888999999999998  5778999999999999999987653              


Q ss_pred             ---------eEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCC
Q 008496          350 ---------KQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDV  420 (563)
Q Consensus       350 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg  420 (563)
                               ...+..|...+..+.. +...+++++.|+.|++|++.+.+++..+.+|...|.+++|+|++++|++|+.||
T Consensus       254 ~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg  332 (464)
T 3v7d_B          254 HTPEENPYFVGVLRGHMASVRTVSG-HGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDT  332 (464)
T ss_dssp             SCGGGCTTEEEEECCCSSCEEEEEE-ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTS
T ss_pred             eccCCCeEEEEEccCccceEEEEcC-CCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCC
Confidence                     3344556666666643 345788999999999999999999999999999999999999999999999999


Q ss_pred             cEEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEc
Q 008496          421 TAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFS  500 (563)
Q Consensus       421 ~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s  500 (563)
                      .|++||+.+++++..+.+|...|.++.|++.           +|++++.||+|++||+.++....... |...+..++|+
T Consensus       333 ~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~-----------~l~s~s~dg~v~vwd~~~~~~~~~~~-~~~~~~~~~~~  400 (464)
T 3v7d_B          333 TIRIWDLENGELMYTLQGHTALVGLLRLSDK-----------FLVSAAADGSIRGWDANDYSRKFSYH-HTNLSAITTFY  400 (464)
T ss_dssp             CEEEEETTTTEEEEEECCCSSCEEEEEECSS-----------EEEEEETTSEEEEEETTTCCEEEEEE-CTTCCCEEEEE
T ss_pred             cEEEEECCCCcEEEEEeCCCCcEEEEEEcCC-----------EEEEEeCCCcEEEEECCCCceeeeec-CCCCccEEEEE
Confidence            9999999999999999999999999999742           79999999999999999988776664 66678889999


Q ss_pred             CCCCEEEEEeCCCcEEEEecCCCeeEEEE--ecCCCEEEEEEcCCCCEEEEEECCCeEEEE
Q 008496          501 PTGEYLASGSLDKSMHIWSLKEGKIVKTY--TGNGGIFEVCWNKEGDKIAACFANHTVCVL  559 (563)
Q Consensus       501 pdg~~lasgs~dg~v~iw~~~~~~~~~~~--~~~~~i~~l~w~~~g~~la~~~~~~~v~v~  559 (563)
                      |++++|++|+ ||.|++||+.+++++..+  ...+.|.+++|+ ....++++..++.+.++
T Consensus       401 ~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~-~~~l~~~~~~~g~~~i~  459 (464)
T 3v7d_B          401 VSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFK-GKTLVAAVEKDGQSFLE  459 (464)
T ss_dssp             ECSSEEEEEE-TTEEEEEETTTCCEEESCTTTTCSEEEEEEEE-TTEEEEEEEETTEEEEE
T ss_pred             eCCCEEEEec-CCeEEEEECCCCcEEehhhccCCCcEEEEEec-CCEEEEEEEeCCeEEEE
Confidence            9999999999 899999999999998763  345679999997 33344455566655443

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=3e-39  Score=359.08  Aligned_cols=327  Identities=22%  Similarity=0.329  Sum_probs=281.2

Q ss_pred             eeEecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCC
Q 008496          208 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT  287 (563)
Q Consensus       208 ~~~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~  287 (563)
                      ...+.+|.+.|.+++|||++++||+|+.||.|+||++.++..             ...+.    .+...|++++|+|+|+
T Consensus         6 ~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~-------------~~~~~----~~~~~v~~~~~s~~~~   68 (814)
T 3mkq_A            6 KKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVE-------------VRSIQ----VTETPVRAGKFIARKN   68 (814)
T ss_dssp             EEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEE-------------EEEEE----CCSSCEEEEEEEGGGT
T ss_pred             ceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCce-------------EEEEe----cCCCcEEEEEEeCCCC
Confidence            467889999999999999999999999999999999876431             11121    3457899999999999


Q ss_pred             EEEEEeCCCeEEEEEcC-CceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCC-ceeEEeeecccCeEEEec
Q 008496          288 LLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTE-EWKQQFEFHSGPTLDVDW  365 (563)
Q Consensus       288 ~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~-~~~~~~~~~~~~~~~~~~  365 (563)
                      +|++|+.||.|++|+.. +.....+.+|.++|++++|+|++++|++++.|++|++||+.++ .....+..|..++.++.|
T Consensus        69 ~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~  148 (814)
T 3mkq_A           69 WIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAF  148 (814)
T ss_dssp             EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEE
T ss_pred             EEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEE
Confidence            99999999999999975 5667788999999999999999999999999999999999886 667778888999999999


Q ss_pred             CC--CceEEEEeCCCeEEEEEcCCCcceeeecCCC-cceeEEEECC--CCCEEEEEeCCCcEEEEeCCCCceeeeecccC
Q 008496          366 RN--NVSFATSSTDNMIYVCKIGENRPIKTFAGHQ-GEVNCVKWDP--TGSLLASCSDDVTAKIWNMKQDKYVHDLREHS  440 (563)
Q Consensus       366 ~~--~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~-~~i~~~~~~~--~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~  440 (563)
                      .+  ...+++++.|+.|++|++....+...+..+. ..+.+++|+|  ++.+|++|+.||.|++||+.++..+..+..|.
T Consensus       149 ~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~  228 (814)
T 3mkq_A          149 NPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHM  228 (814)
T ss_dssp             ETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCS
T ss_pred             EcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCC
Confidence            76  4578999999999999998887777776655 8899999999  99999999999999999999999999999999


Q ss_pred             CCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCC--EEEEEeCCCcEEEE
Q 008496          441 KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGE--YLASGSLDKSMHIW  518 (563)
Q Consensus       441 ~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~--~lasgs~dg~v~iw  518 (563)
                      ..|.+++|+|++.         +|++++.||.|++||+.+++.+..+..|..+|.+++|+|+|.  ++++++ ++.+.+|
T Consensus       229 ~~v~~~~~~~~~~---------~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~  298 (814)
T 3mkq_A          229 SNVSFAVFHPTLP---------IIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGF-DNGFTVL  298 (814)
T ss_dssp             SCEEEEEECSSSS---------EEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEE-TTEEEEE
T ss_pred             CCEEEEEEcCCCC---------EEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEe-CCCEEEE
Confidence            9999999999875         799999999999999999999999999999999999999997  455555 6668899


Q ss_pred             ecCCCeeEEEEe--------------------------------------------cCCCEEEEEEcCCCCEEEEEECCC
Q 008496          519 SLKEGKIVKTYT--------------------------------------------GNGGIFEVCWNKEGDKIAACFANH  554 (563)
Q Consensus       519 ~~~~~~~~~~~~--------------------------------------------~~~~i~~l~w~~~g~~la~~~~~~  554 (563)
                      ++..+.....+.                                            ....+..++|+|+|+.||+++ ++
T Consensus       299 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~-~~  377 (814)
T 3mkq_A          299 SLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG-DG  377 (814)
T ss_dssp             ECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE-TT
T ss_pred             EcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECCCCCEEEEec-CC
Confidence            876533211111                                            011356899999999999997 88


Q ss_pred             eEEEEEee
Q 008496          555 TVCVLDFR  562 (563)
Q Consensus       555 ~v~v~~~~  562 (563)
                      .+.||+++
T Consensus       378 ~~~i~~~~  385 (814)
T 3mkq_A          378 EYVIYTAL  385 (814)
T ss_dssp             EEEEEETT
T ss_pred             EEEEEECc
Confidence            99999854

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=1.2e-39  Score=330.77  Aligned_cols=295  Identities=21%  Similarity=0.322  Sum_probs=252.8

Q ss_pred             eeEecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCC--
Q 008496          208 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE--  285 (563)
Q Consensus       208 ~~~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~--  285 (563)
                      ..++.+|...|++++|+|  ++|++|+.||+|++|++.++......    ...   ..+    ..+...|++++|+|+  
T Consensus         9 ~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~----~~~---~~~----~~h~~~v~~~~~~~~~~   75 (397)
T 1sq9_A            9 ANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPK----DKS---YSH----FVHKSGLHHVDVLQAIE   75 (397)
T ss_dssp             EEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGG----GGE---EEE----ECCTTCEEEEEEEEEEE
T ss_pred             hhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCC----Ccc---eEE----ecCCCcEEEEEEecccc
Confidence            357889999999999999  89999999999999999765421100    001   111    134678999999999  


Q ss_pred             --C---CEEEEEeCCCeEEEEEcCCce------eEeeccC-----CCCEEEEEeC----CCCCE-EEEeeCCCcEEEEEC
Q 008496          286 --G---TLLATGSYDGQARIWSTNGDL------KCTLSKH-----KGPIFSLKWN----KKGDY-LLTGSCDKTAIVWDV  344 (563)
Q Consensus       286 --g---~~l~sg~~dg~i~vw~~~~~~------~~~~~~h-----~~~V~~l~~~----~~~~~-l~s~s~D~~v~iwd~  344 (563)
                        |   .+|++++.||.|++|+.....      ...+..|     ..+|.+++|+    |++++ |++++.|+.|++||+
T Consensus        76 ~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~  155 (397)
T 1sq9_A           76 RDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKF  155 (397)
T ss_dssp             TTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEE
T ss_pred             cCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeC
Confidence              9   999999999999999976433      6778888     5999999999    99999 999999999999999


Q ss_pred             CC------CceeE-----Eee-------ecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecC---C---Ccc
Q 008496          345 KT------EEWKQ-----QFE-------FHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAG---H---QGE  400 (563)
Q Consensus       345 ~~------~~~~~-----~~~-------~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~---h---~~~  400 (563)
                      .+      +....     .+.       .+...+.++.|.++..+++++.|+.|++|++...+++..+.+   |   ...
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~  235 (397)
T 1sq9_A          156 HPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNS  235 (397)
T ss_dssp             ESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCC
T ss_pred             CccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCceEEEEeCCCcEEEEECCCCceeEEEeccccccccCCc
Confidence            88      66555     553       367788899997655788899999999999999999999998   9   999


Q ss_pred             eeEEEECCCCCEEEEEeCC---CcEEEEeCCCCceeeeecc-------------cCCCEEEEEEccCCCCCCCCCCcEEE
Q 008496          401 VNCVKWDPTGSLLASCSDD---VTAKIWNMKQDKYVHDLRE-------------HSKEIYTIRWSPTGSGTNNPNQQLIL  464 (563)
Q Consensus       401 i~~~~~~~~~~~las~s~d---g~i~iwd~~~~~~~~~~~~-------------~~~~i~~~~~~p~~~~~~~~~~~~~l  464 (563)
                      |.+++|+|++++|++++.|   +.|++||+++++.+..+..             |...|.+++|+|++.         +|
T Consensus       236 i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---------~l  306 (397)
T 1sq9_A          236 IRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGE---------TL  306 (397)
T ss_dssp             EEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSS---------EE
T ss_pred             cceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCC---------EE
Confidence            9999999999999999999   9999999999999999988             999999999999875         79


Q ss_pred             EEEeCCCeEEEEeCCCCeEEEEec------CC---------------CCCEEEEEEcCCC----------CEEEEEeCCC
Q 008496          465 ASASFDSTVKLWDVELGKLLYSLN------GH---------------REPVYSLAFSPTG----------EYLASGSLDK  513 (563)
Q Consensus       465 ~s~s~dg~i~iwd~~~~~~~~~~~------~h---------------~~~i~~l~~spdg----------~~lasgs~dg  513 (563)
                      ++++.||.|++||+.+++++..+.      +|               ..+|++++|+|+|          ++|++|+.||
T Consensus       307 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg  386 (397)
T 1sq9_A          307 CSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDR  386 (397)
T ss_dssp             EEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTT
T ss_pred             EEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCC
Confidence            999999999999999999999998      88               9999999999999          7999999999


Q ss_pred             cEEEEecCCCe
Q 008496          514 SMHIWSLKEGK  524 (563)
Q Consensus       514 ~v~iw~~~~~~  524 (563)
                      .|++|++.+|+
T Consensus       387 ~i~iw~~~~g~  397 (397)
T 1sq9_A          387 SIRWFREAGGK  397 (397)
T ss_dssp             EEEEEEEEC--
T ss_pred             cEEEEEcCCCC
Confidence            99999998764

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=1.7e-39  Score=322.60  Aligned_cols=253  Identities=19%  Similarity=0.266  Sum_probs=207.5

Q ss_pred             cCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEE
Q 008496          212 EGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLAT  291 (563)
Q Consensus       212 ~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~s  291 (563)
                      ..|...|++++|+|++ .|++|+.||+|+|||+.++....          ....   ....|...|++++|+|+|++|++
T Consensus        79 ~~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~----------~~~~---~~~~H~~~V~~v~~spdg~~l~s  144 (344)
T 4gqb_B           79 VQTEAGVADLTWVGER-GILVASDSGAVELWELDENETLI----------VSKF---CKYEHDDIVSTVSVLSSGTQAVS  144 (344)
T ss_dssp             EEESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCE----------EEEE---EEECCSSCEEEEEECTTSSEEEE
T ss_pred             eccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCcee----------Eeec---cccCCCCCEEEEEECCCCCEEEE
Confidence            3466789999999985 67899999999999998754311          1111   11245678999999999999999


Q ss_pred             EeCCCeEEEEEcC-CceeEeeccCCCCEEEEEeCCCCC-EEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecCCCc
Q 008496          292 GSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGD-YLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNV  369 (563)
Q Consensus       292 g~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~-~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  369 (563)
                      |+.||.|++||.. +.....+.+|.+.|++++|+|++. .|++|+.|++|++||+++++....+.               
T Consensus       145 gs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~---------------  209 (344)
T 4gqb_B          145 GSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIG---------------  209 (344)
T ss_dssp             EETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC---------------
T ss_pred             EeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeee---------------
Confidence            9999999999976 567778999999999999999984 78999999999999998876544321               


Q ss_pred             eEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCC-CCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEEEEE
Q 008496          370 SFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT-GSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRW  448 (563)
Q Consensus       370 ~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~-~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~  448 (563)
                                              ...|...+.+++|+|+ +++|++|+.||+|+|||+++++++..+.+|...|++++|
T Consensus       210 ------------------------~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~f  265 (344)
T 4gqb_B          210 ------------------------CSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVF  265 (344)
T ss_dssp             ----------------------------CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEE
T ss_pred             ------------------------cceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEE
Confidence                                    1234556889999985 578999999999999999999999999999999999999


Q ss_pred             ccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEecCCCeeE
Q 008496          449 SPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGE-YLASGSLDKSMHIWSLKEGKIV  526 (563)
Q Consensus       449 ~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~-~lasgs~dg~v~iw~~~~~~~~  526 (563)
                      +|++.        .+|++|+.|++|+|||+.+++++ .+.+|...|++++|||++. +|++||.|++|++|++.+..+.
T Consensus       266 sp~g~--------~~lasgs~D~~i~vwd~~~~~~~-~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~~~  335 (344)
T 4gqb_B          266 SPHSV--------PFLASLSEDCSLAVLDSSLSELF-RSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEPLP  335 (344)
T ss_dssp             CSSSS--------CCEEEEETTSCEEEECTTCCEEE-EECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC----
T ss_pred             ccCCC--------eEEEEEeCCCeEEEEECCCCcEE-EEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCCCC
Confidence            99874        26899999999999999988764 5789999999999999986 5779999999999999876543

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=1.5e-38  Score=369.36  Aligned_cols=336  Identities=21%  Similarity=0.345  Sum_probs=284.9

Q ss_pred             eeEecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCC
Q 008496          208 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT  287 (563)
Q Consensus       208 ~~~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~  287 (563)
                      ...+.+|.+.|++++|+|++++||+|+.||+|++|++.++..             +..+    ..+...|++++|+|+|+
T Consensus       608 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~-------------~~~~----~~h~~~v~~~~~s~~~~  670 (1249)
T 3sfz_A          608 RLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEK-------------LLDI----KAHEDEVLCCAFSSDDS  670 (1249)
T ss_dssp             SEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE-------------EEEE----CCCSSCEEEEEECTTSS
T ss_pred             eEEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCE-------------EEEe----ccCCCCEEEEEEecCCC
Confidence            457889999999999999999999999999999999976532             1112    23567899999999999


Q ss_pred             EEEEEeCCCeEEEEEcC-CceeEeeccCCCCEEEEEeCC--CCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEe
Q 008496          288 LLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNK--KGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVD  364 (563)
Q Consensus       288 ~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~--~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~  364 (563)
                      +|++|+.||.|++|+.. +.....+.+|..+|.+++|+|  ++..+++|+.|++|++||+.++.....+..|..++.++.
T Consensus       671 ~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~  750 (1249)
T 3sfz_A          671 YIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCR  750 (1249)
T ss_dssp             EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEE
T ss_pred             EEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEE
Confidence            99999999999999975 567778899999999999999  556899999999999999999999999999999999999


Q ss_pred             cCCC-ceEEEEeCCCeEEEEEcCCCcceeee-------------------------------------------------
Q 008496          365 WRNN-VSFATSSTDNMIYVCKIGENRPIKTF-------------------------------------------------  394 (563)
Q Consensus       365 ~~~~-~~~~~~~~d~~i~~~~~~~~~~~~~~-------------------------------------------------  394 (563)
                      |.++ ..+++++.|+.|++|++........+                                                 
T Consensus       751 ~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~  830 (1249)
T 3sfz_A          751 FSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSG  830 (1249)
T ss_dssp             ECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCC
T ss_pred             EecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCC
Confidence            9754 57889999999999998654322211                                                 


Q ss_pred             ------cCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEEEEEccCCCCC-------------
Q 008496          395 ------AGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGT-------------  455 (563)
Q Consensus       395 ------~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~-------------  455 (563)
                            .+|...|.+++|+|+++++++++.||.|++||+.++..+..+.+|...|++++|+|++...             
T Consensus       831 ~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~  910 (1249)
T 3sfz_A          831 LLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWE  910 (1249)
T ss_dssp             EEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             ceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEE
Confidence                  2678889999999999999999999999999999999999999999999999999987410             


Q ss_pred             ----------------------------------------------------------CCCCCcEEEEEEeCCCeEEEEe
Q 008496          456 ----------------------------------------------------------NNPNQQLILASASFDSTVKLWD  477 (563)
Q Consensus       456 ----------------------------------------------------------~~~~~~~~l~s~s~dg~i~iwd  477 (563)
                                                                                ..|+. .++++|+.||.|++||
T Consensus       911 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g-~~l~~g~~~g~i~i~d  989 (1249)
T 3sfz_A          911 TKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHL-EYVAFGDEDGAIKIIE  989 (1249)
T ss_dssp             HHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTS-SEEEEEETTSCCEEEE
T ss_pred             ccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCC-CEEEEEcCCCCEEEEE
Confidence                                                                      01111 1355666666666666


Q ss_pred             CCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEecCCCEEEEEEcCCCCEEEEEECCCeEE
Q 008496          478 VELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVC  557 (563)
Q Consensus       478 ~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~~~~i~~l~w~~~g~~la~~~~~~~v~  557 (563)
                      +.+++.+..+.+|..+|++++|+|+|++|++|+.||.|++|++.+++.+........|.+++|++++ .+++++.++.+.
T Consensus       990 ~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~v~ 1068 (1249)
T 3sfz_A          990 LPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDS-RLLSWSFDGTVK 1068 (1249)
T ss_dssp             TTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEECCBCCSSCEEEEEECSSS-EEEEEESSSEEE
T ss_pred             cCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEEEecCCCcEEEEEEcCCC-cEEEEECCCcEE
Confidence            6677777778889999999999999999999999999999999999887666667789999999976 567778999999


Q ss_pred             EEEee
Q 008496          558 VLDFR  562 (563)
Q Consensus       558 v~~~~  562 (563)
                      |||++
T Consensus      1069 vwd~~ 1073 (1249)
T 3sfz_A         1069 VWNVI 1073 (1249)
T ss_dssp             EEETT
T ss_pred             EEECC
Confidence            99974

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=1.8e-39  Score=325.34  Aligned_cols=293  Identities=19%  Similarity=0.343  Sum_probs=243.2

Q ss_pred             eEecCCCCceEEEEECCC----CCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECC
Q 008496          209 TILEGHTSEVCACAWSPA----GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG  284 (563)
Q Consensus       209 ~~l~~h~~~V~~~~~sp~----~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~  284 (563)
                      .++.+|...|++++|+|+    ...+++++.++.|++|++.++...          ..+....  ...+...|++++|+|
T Consensus        12 ~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~----------~~~~~~~--~~~~~~~v~~~~~~~   79 (366)
T 3k26_A           12 SLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEI----------RLLQSYV--DADADENFYTCAWTY   79 (366)
T ss_dssp             EEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCE----------EEEEEEE--CSCTTCCEEEEEEEE
T ss_pred             EeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEE----------Eeeeecc--ccCCCCcEEEEEecc
Confidence            355799999999999994    456777777789999998754321          1111111  122457799999999


Q ss_pred             C----CCEEEEEeCCCeEEEEEcC-CceeEeeccCCCCEEEEEeCC-CCCEEEEeeCCCcEEEEECCCCceeEEeeeccc
Q 008496          285 E----GTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNK-KGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSG  358 (563)
Q Consensus       285 ~----g~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~  358 (563)
                      +    |.+|++|+.||.|++|+.. +.....+.+|..+|.+++|+| ++++|++|+.|++|++||+++++....+     
T Consensus        80 ~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-----  154 (366)
T 3k26_A           80 DSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIF-----  154 (366)
T ss_dssp             CTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEE-----
T ss_pred             CCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEe-----
Confidence            9    6799999999999999976 567778889999999999999 8999999999999999999876543322     


Q ss_pred             CeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecc
Q 008496          359 PTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLRE  438 (563)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~  438 (563)
                                                       ..+.+|...|.+++|+|++++|++++.||.|++||+++++....+..
T Consensus       155 ---------------------------------~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  201 (366)
T 3k26_A          155 ---------------------------------GGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKE  201 (366)
T ss_dssp             ---------------------------------CSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHH
T ss_pred             ---------------------------------cccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccce
Confidence                                             11357889999999999999999999999999999988765544433


Q ss_pred             ----------------------------cCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCe--------
Q 008496          439 ----------------------------HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK--------  482 (563)
Q Consensus       439 ----------------------------~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~--------  482 (563)
                                                  |...|.+++|+  +.         +|++++.||.|++||+.++.        
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~---------~l~~~~~d~~i~~wd~~~~~~~~~~~~~  270 (366)
T 3k26_A          202 SYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GD---------LILSKSCENAIVCWKPGKMEDDIDKIKP  270 (366)
T ss_dssp             HHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TT---------EEEEECSSSEEEEEEESSTTCCGGGCCT
T ss_pred             eEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CC---------EEEEEecCCEEEEEeCCCcccccccccc
Confidence                                        88999999998  22         78999999999999988763        


Q ss_pred             ------EEEEecCCCCCEEEEEEcCC--CCEEEEEeCCCcEEEEecCCCe----eEEEEecC---CCEEEEEEcCCCCEE
Q 008496          483 ------LLYSLNGHREPVYSLAFSPT--GEYLASGSLDKSMHIWSLKEGK----IVKTYTGN---GGIFEVCWNKEGDKI  547 (563)
Q Consensus       483 ------~~~~~~~h~~~i~~l~~spd--g~~lasgs~dg~v~iw~~~~~~----~~~~~~~~---~~i~~l~w~~~g~~l  547 (563)
                            .+..+.+|..+|++++|+|+  +++|++|+.||.|++||+.+++    ....+..+   ..|.+++|+|+|++|
T Consensus       271 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  350 (366)
T 3k26_A          271 SESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSIL  350 (366)
T ss_dssp             TCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEE
T ss_pred             CCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeE
Confidence                  47788899999999999999  9999999999999999999875    44466654   689999999999999


Q ss_pred             EEEECCCeEEEEEee
Q 008496          548 AACFANHTVCVLDFR  562 (563)
Q Consensus       548 a~~~~~~~v~v~~~~  562 (563)
                      ++|+.||.|.|||+.
T Consensus       351 ~s~~~dg~i~iwd~~  365 (366)
T 3k26_A          351 IAVCDDASIWRWDRL  365 (366)
T ss_dssp             EEEETTSEEEEEEC-
T ss_pred             EEEeCCCEEEEEEec
Confidence            999999999999985

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.7e-39  Score=356.89  Aligned_cols=332  Identities=9%  Similarity=0.088  Sum_probs=248.8

Q ss_pred             eEecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeee---cccccCCCCeEEEEECCC
Q 008496          209 TILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVK---GRTNEKSKDVTTLDWNGE  285 (563)
Q Consensus       209 ~~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~V~~l~~s~~  285 (563)
                      ..+. |...|++++|+|++++|++|+.||+|++||+.++...         .+......   .....+...|++++|+|+
T Consensus        93 ~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~---------~~~i~~~~~~~~~~~~h~~~V~sl~~sp~  162 (902)
T 2oaj_A           93 TTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLS---------SFKLDNLQKSSFFPAARLSPIVSIQWNPR  162 (902)
T ss_dssp             EEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEE---------EEEECCHHHHHTCSSSCCCCCCEEEEETT
T ss_pred             EEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccc---------cceeccccccccccccCCCCeEEEEEccC
Confidence            3443 6788999999999999999999999999999764310         00000000   112345678999999996


Q ss_pred             -CCEEEEEeCCCeEEEEEcCC-ceeEeeccC------------------CCCEEEEEeCCCCCEEEEeeCCCcEEEEECC
Q 008496          286 -GTLLATGSYDGQARIWSTNG-DLKCTLSKH------------------KGPIFSLKWNKKGDYLLTGSCDKTAIVWDVK  345 (563)
Q Consensus       286 -g~~l~sg~~dg~i~vw~~~~-~~~~~~~~h------------------~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~  345 (563)
                       +..|++|+.||.| +||... .....+..|                  ...|++++|+|+|.+|++|+.|++|++||++
T Consensus       163 ~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~  241 (902)
T 2oaj_A          163 DIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDAN  241 (902)
T ss_dssp             EEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETT
T ss_pred             CCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Confidence             5789999999999 999864 344455444                  5789999999999999999999999999998


Q ss_pred             CCceeEE--ee---e-------------cccCeEEEecC----CC--ce-------------------------------
Q 008496          346 TEEWKQQ--FE---F-------------HSGPTLDVDWR----NN--VS-------------------------------  370 (563)
Q Consensus       346 ~~~~~~~--~~---~-------------~~~~~~~~~~~----~~--~~-------------------------------  370 (563)
                      +++.+..  +.   .             +..++..+.|.    ++  ..                               
T Consensus       242 ~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~  321 (902)
T 2oaj_A          242 SGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSY  321 (902)
T ss_dssp             TCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCH
T ss_pred             CCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccch
Confidence            8776542  10   0             12235555552    11  11                               


Q ss_pred             ---------------------------------------------EEEEeCCCeEEEEEcCCCccee-------------
Q 008496          371 ---------------------------------------------FATSSTDNMIYVCKIGENRPIK-------------  392 (563)
Q Consensus       371 ---------------------------------------------~~~~~~d~~i~~~~~~~~~~~~-------------  392 (563)
                                                                   +++.+.|+.|++|++.++.+..             
T Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~  401 (902)
T 2oaj_A          322 EGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLR  401 (902)
T ss_dssp             HHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBT
T ss_pred             hhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccC
Confidence                                                         2233334556666654332211             


Q ss_pred             ----------------------------eecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceee----e--ec-
Q 008496          393 ----------------------------TFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVH----D--LR-  437 (563)
Q Consensus       393 ----------------------------~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~----~--~~-  437 (563)
                                                  .+.||...+.+++|+|++++||||+.|++||+||+.++....    .  +. 
T Consensus       402 ~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~  481 (902)
T 2oaj_A          402 PLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSR  481 (902)
T ss_dssp             TBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHH
T ss_pred             CCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechh
Confidence                                        123344445556678999999999999999999998764211    1  11 


Q ss_pred             ----ccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC--------------------------------
Q 008496          438 ----EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG--------------------------------  481 (563)
Q Consensus       438 ----~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~--------------------------------  481 (563)
                          +|...|++++|+|++.         +||+|+.||+|+|||+.++                                
T Consensus       482 ~~~~~h~~~V~svafspdg~---------~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  552 (902)
T 2oaj_A          482 TLNKAKELAVDKISFAAETL---------ELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVD  552 (902)
T ss_dssp             HTTCSSSCCEEEEEEETTTT---------EEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEE
T ss_pred             hcCCCCCCceeEEEecCCCC---------eEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCcccccc
Confidence                7888999999999986         8999999999999998765                                


Q ss_pred             -------------eEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEe------c-CCCEEEEEEc
Q 008496          482 -------------KLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYT------G-NGGIFEVCWN  541 (563)
Q Consensus       482 -------------~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~------~-~~~i~~l~w~  541 (563)
                                   +++..+.+|..+|++|+||||| +||+|+.|++|+|||++++.++....      + ...|++++|+
T Consensus       553 ~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs  631 (902)
T 2oaj_A          553 VRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFV  631 (902)
T ss_dssp             CGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEE
T ss_pred             ccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEE
Confidence                         3477888999999999999999 99999999999999999887765321      2 3459999999


Q ss_pred             -----CCC---CEEEEEECCCeEEEEEe
Q 008496          542 -----KEG---DKIAACFANHTVCVLDF  561 (563)
Q Consensus       542 -----~~g---~~la~~~~~~~v~v~~~  561 (563)
                           |||   .+|++|+.|++|.+||+
T Consensus       632 ~~~~~~Dg~~~~~l~sgs~D~tv~~wd~  659 (902)
T 2oaj_A          632 IMEYGDDGYSSILMVCGTDMGEVITYKI  659 (902)
T ss_dssp             EEECTTSSSEEEEEEEEETTSEEEEEEE
T ss_pred             EEecCCCCCcceEEEEEecCCcEEEEEE
Confidence                 886   89999999999999998

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.9e-38  Score=310.67  Aligned_cols=287  Identities=26%  Similarity=0.363  Sum_probs=249.7

Q ss_pred             ceeEecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCC
Q 008496          207 DVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG  286 (563)
Q Consensus       207 ~~~~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g  286 (563)
                      ....+.+|.+.|++++| |++.+|++|+.||.|++|++.++..             ....    ..+...|++++|+|++
T Consensus        10 ~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~-------------~~~~----~~~~~~v~~~~~~~~~   71 (313)
T 3odt_A           10 LSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWL-------------GTVV----YTGQGFLNSVCYDSEK   71 (313)
T ss_dssp             EEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEE-------------EEEE----EECSSCEEEEEEETTT
T ss_pred             HHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEE-------------EEEe----ecCCccEEEEEECCCC
Confidence            45678999999999999 9999999999999999999865321             1111    1235789999999999


Q ss_pred             CEEEEEeCCCeEEEEEcCC----ceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEE
Q 008496          287 TLLATGSYDGQARIWSTNG----DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLD  362 (563)
Q Consensus       287 ~~l~sg~~dg~i~vw~~~~----~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~  362 (563)
                      ++|++|+.||.+++|+...    .....+..|..+|.++.|  ++++|++++.|+.|++||  .+.....+..|..++..
T Consensus        72 ~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~  147 (313)
T 3odt_A           72 ELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWD  147 (313)
T ss_dssp             TEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEE
T ss_pred             CEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeE
Confidence            9999999999999999653    345678899999999999  578999999999999999  66777788888899988


Q ss_pred             EecC--CCceEEEEeCCCeEEEEEcCCCcceeeecC-CCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeccc
Q 008496          363 VDWR--NNVSFATSSTDNMIYVCKIGENRPIKTFAG-HQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREH  439 (563)
Q Consensus       363 ~~~~--~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~-h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~  439 (563)
                      +.|.  +...+++++.|+.|++|+  ...++..+.. |...|.+++|+|++. +++++.|+.|++||+++++.+..+..|
T Consensus       148 ~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~  224 (313)
T 3odt_A          148 AKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGH  224 (313)
T ss_dssp             EEEEETTTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred             EEEccCCCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcC
Confidence            8875  467889999999999999  4556677777 899999999999998 899999999999999999999999999


Q ss_pred             CCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 008496          440 SKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWS  519 (563)
Q Consensus       440 ~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~  519 (563)
                      ...|++++|+|++          .|++++.||.|++||+.+++++..+..|..+|.+++|+|+++ +++++.||.|++|+
T Consensus       225 ~~~i~~~~~~~~~----------~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~  293 (313)
T 3odt_A          225 ESFVYCIKLLPNG----------DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFS  293 (313)
T ss_dssp             SSCEEEEEECTTS----------CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEE
T ss_pred             CceEEEEEEecCC----------CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEe
Confidence            9999999999986          278999999999999999999999999999999999999998 56799999999999


Q ss_pred             cCCCeeEEEE
Q 008496          520 LKEGKIVKTY  529 (563)
Q Consensus       520 ~~~~~~~~~~  529 (563)
                      +.+++.+...
T Consensus       294 ~~~~~~~~~~  303 (313)
T 3odt_A          294 QEKSRWASED  303 (313)
T ss_dssp             SCGGGCCC--
T ss_pred             CCCCceeehh
Confidence            9988765543

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=2.9e-40  Score=383.79  Aligned_cols=342  Identities=21%  Similarity=0.296  Sum_probs=290.9

Q ss_pred             eeEecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCC--------ce-----------EEEEEe-ee
Q 008496          208 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGP--------LN-----------VLVLKH-VK  267 (563)
Q Consensus       208 ~~~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~--------~~-----------~~~~~~-~~  267 (563)
                      +..+.+|...|.+++|+|++++|++++.|+++++|++.+...........        ..           ...... ..
T Consensus       875 ~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  954 (1249)
T 3sfz_A          875 VADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTG  954 (1249)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSC
T ss_pred             eeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcc
Confidence            45678999999999999999999999999999999975421110000000        00           000000 00


Q ss_pred             cccccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcC-CceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCC
Q 008496          268 GRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKT  346 (563)
Q Consensus       268 ~~~~~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~  346 (563)
                      .........|++++|+|+|+++++|+.+|.|++|+.. +.....+.+|..+|++++|+|+|++|++++.|++|++||+.+
T Consensus       955 ~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~ 1034 (1249)
T 3sfz_A          955 QIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQT 1034 (1249)
T ss_dssp             CEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTT
T ss_pred             eEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCC
Confidence            0011224579999999999999999999999999975 566677889999999999999999999999999999999999


Q ss_pred             CceeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEe
Q 008496          347 EEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWN  426 (563)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd  426 (563)
                      +.... +..|...+.++.|.++..+++++.|+.|++|++.+++.+..+.+|.+.|.+++|+|++++|++++.|++|++||
T Consensus      1035 ~~~~~-~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd 1113 (1249)
T 3sfz_A         1035 GDYVF-LQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWS 1113 (1249)
T ss_dssp             TEEEC-CBCCSSCEEEEEECSSSEEEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEEC
T ss_pred             CceEE-EecCCCcEEEEEEcCCCcEEEEECCCcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEE
Confidence            87664 45677889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEe---------cCCCCCEEEE
Q 008496          427 MKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSL---------NGHREPVYSL  497 (563)
Q Consensus       427 ~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~---------~~h~~~i~~l  497 (563)
                      +.++.++..+.+|...|++++|+|++.         +|++|+.||.|++||+.+++++..+         .+|..+|+++
T Consensus      1114 ~~~~~~~~~l~~h~~~v~~~~~s~dg~---------~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l 1184 (1249)
T 3sfz_A         1114 FDLLSPLHELKGHNGCVRCSAFSLDGI---------LLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDV 1184 (1249)
T ss_dssp             SSSSSCSBCCCCCSSCEEEEEECSSSS---------EEEEEETTSCCCEEESSSSCCCCCCCCCC-------CCSCCCEE
T ss_pred             CCCcceeeeeccCCCcEEEEEECCCCC---------EEEEEeCCCEEEEEECCCCceEEEeccccccccccccCceEEEE
Confidence            999999999999999999999999886         7999999999999999998876654         6788999999


Q ss_pred             EEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEec-CCCEEEEEEcCCCCEEEEEECCCeEEEEEe
Q 008496          498 AFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTG-NGGIFEVCWNKEGDKIAACFANHTVCVLDF  561 (563)
Q Consensus       498 ~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~-~~~i~~l~w~~~g~~la~~~~~~~v~v~~~  561 (563)
                      +|||||++|++++  |.|++||+.+++.+..+.. ...|.+++|+|+|+.|++++.+|.+.||++
T Consensus      1185 ~fs~dg~~l~s~~--g~v~vwd~~~g~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~v~vw~l 1247 (1249)
T 3sfz_A         1185 CFSPDSKTLVSAG--GYLKWWNVATGDSSQTFYTNGTNLKKIHVSPDFRTYVTVDNLGILYILQV 1247 (1249)
T ss_dssp             EECTTSSCEEEES--SSEEEBCSSSCBCCCCCCCSSCCCCCCEECSSSCCEEEECTTCCEEEECC
T ss_pred             EECCCCCEEEECC--CeEEEEECCCCceeeeeeccCCcccEEEECCCCCEEEEecCCcEEEEEee
Confidence            9999999999886  8999999999998877764 446889999999999999999999999986

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=1.2e-38  Score=310.44  Aligned_cols=254  Identities=25%  Similarity=0.407  Sum_probs=208.1

Q ss_pred             eeEecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCC--
Q 008496          208 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE--  285 (563)
Q Consensus       208 ~~~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~--  285 (563)
                      +.++.+|...|++++|+|+|++||||+.|++|+||++......      .     +..+    ..|...|++++|+++  
T Consensus         2 ~~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~------~-----~~~l----~gH~~~V~~v~~s~~~~   66 (297)
T 2pm7_B            2 VVIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHK------L-----IDTL----TGHEGPVWRVDWAHPKF   66 (297)
T ss_dssp             CEECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBC------C-----CEEE----CCCSSCEEEEEECCGGG
T ss_pred             ceeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcE------E-----EEEE----ccccCCeEEEEecCCCc
Confidence            3567899999999999999999999999999999998642110      0     1111    245678999999874  


Q ss_pred             CCEEEEEeCCCeEEEEEcCCc---eeEeeccCCCCEEEEEeCCC--CCEEEEeeCCCcEEEEECCCCceeEEeeecccCe
Q 008496          286 GTLLATGSYDGQARIWSTNGD---LKCTLSKHKGPIFSLKWNKK--GDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPT  360 (563)
Q Consensus       286 g~~l~sg~~dg~i~vw~~~~~---~~~~~~~h~~~V~~l~~~~~--~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~  360 (563)
                      |++|++|+.||+|++|+....   ....+..|..+|.+++|+|+  +.+|++|+.|++|++||++++...          
T Consensus        67 g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~----------  136 (297)
T 2pm7_B           67 GTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTT----------  136 (297)
T ss_dssp             CSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCB----------
T ss_pred             CCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCce----------
Confidence            899999999999999998643   44567889999999999997  899999999999999998764210          


Q ss_pred             EEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCC-------------CCEEEEEeCCCcEEEEeC
Q 008496          361 LDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT-------------GSLLASCSDDVTAKIWNM  427 (563)
Q Consensus       361 ~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~-------------~~~las~s~dg~i~iwd~  427 (563)
                                                   ....+.+|...|.+++|+|+             +++||+|+.|++|+|||+
T Consensus       137 -----------------------------~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~  187 (297)
T 2pm7_B          137 -----------------------------SPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKY  187 (297)
T ss_dssp             -----------------------------CCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEE
T ss_pred             -----------------------------eeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEE
Confidence                                         01234567888888888886             579999999999999999


Q ss_pred             CCCc----eeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCe---EEEEe--cCCCCCEEEEE
Q 008496          428 KQDK----YVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK---LLYSL--NGHREPVYSLA  498 (563)
Q Consensus       428 ~~~~----~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~---~~~~~--~~h~~~i~~l~  498 (563)
                      +++.    ....+.+|...|.+++|+|++.      ...+|++|+.|++|+|||++.+.   ....+  ..|...|++++
T Consensus       188 ~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~------~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~  261 (297)
T 2pm7_B          188 NSDAQTYVLESTLEGHSDWVRDVAWSPTVL------LRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRAS  261 (297)
T ss_dssp             ETTTTEEEEEEEECCCSSCEEEEEECCCCS------SSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEE
T ss_pred             cCCCceEEEEEEecCCCCceEEEEECCCCC------CceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEE
Confidence            8765    5667889999999999999751      11379999999999999987642   22233  56888999999


Q ss_pred             EcCCCCEEEEEeCCCcEEEEecC
Q 008496          499 FSPTGEYLASGSLDKSMHIWSLK  521 (563)
Q Consensus       499 ~spdg~~lasgs~dg~v~iw~~~  521 (563)
                      |+|+|++||+|+.||.|+||+..
T Consensus       262 ~s~~g~~las~~~D~~v~lw~~~  284 (297)
T 2pm7_B          262 WSLSGNVLALSGGDNKVTLWKEN  284 (297)
T ss_dssp             ECSSSCCEEEEETTSCEEEEEEC
T ss_pred             ECCCCCEEEEEcCCCcEEEEEEC
Confidence            99999999999999999999976

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.7e-40  Score=346.52  Aligned_cols=310  Identities=14%  Similarity=0.129  Sum_probs=230.0

Q ss_pred             CCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCC------CCEEEEEeCCCeEEE
Q 008496          227 GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE------GTLLATGSYDGQARI  300 (563)
Q Consensus       227 ~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~------g~~l~sg~~dg~i~v  300 (563)
                      +++||+|+.|++|+||++.++...         ......+    ..+...|.+++|+|+      +.+||+|+.||+|+|
T Consensus       173 ~~~laS~s~D~tI~iWd~~~~~~~---------~~~~~~l----~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~Dgtvrl  239 (524)
T 2j04_B          173 LEMFDKEKHSSCIQIFKMNTSTLH---------CVKVQTI----VHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINF  239 (524)
T ss_dssp             ---------CEEEEEEEEETTTCC---------EEEEEEE----EECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEE
T ss_pred             hhhhccCCCCceEEEEEccCCCCC---------ceEEEEE----EecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEE
Confidence            334555678899999998654321         0000011    123467999999997      579999999999999


Q ss_pred             EEcCCce------------eEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCc-eeEEeeecccCeEEE--ec
Q 008496          301 WSTNGDL------------KCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEE-WKQQFEFHSGPTLDV--DW  365 (563)
Q Consensus       301 w~~~~~~------------~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~-~~~~~~~~~~~~~~~--~~  365 (563)
                      |++....            ...+.+|..+|++++|+++ ..|++|+.||+|++||++++. ....+..|..++.++  .|
T Consensus       240 Wd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~  318 (524)
T 2j04_B          240 LEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP-TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAY  318 (524)
T ss_dssp             EECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS-SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEEC
T ss_pred             EEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC-CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEc
Confidence            9986431            2367789999999999986 489999999999999998764 445678899999998  56


Q ss_pred             CCC--ceEEEEeCCCeEEEEEcCCCcceeeecCCCc--ceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccCC
Q 008496          366 RNN--VSFATSSTDNMIYVCKIGENRPIKTFAGHQG--EVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSK  441 (563)
Q Consensus       366 ~~~--~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~--~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~  441 (563)
                      .++  ..|++++.|++|++|++...+++..+.+|..  .|.+++|+|+++.|++++.|++|++||++++.++..+.+|..
T Consensus       319 s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~  398 (524)
T 2j04_B          319 SDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRET  398 (524)
T ss_dssp             CTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSS
T ss_pred             CCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCC
Confidence            654  5789999999999999998887777777764  488999999999999999999999999999988888999999


Q ss_pred             CEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecC-----CCCCEEEEEEcCCCCEEEEEeCCCcEE
Q 008496          442 EIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNG-----HREPVYSLAFSPTGEYLASGSLDKSMH  516 (563)
Q Consensus       442 ~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-----h~~~i~~l~~spdg~~lasgs~dg~v~  516 (563)
                      .|++++|+|++.         +|++|+.||+|+|||+..+ .+..++.     +...|++++|+|+|..+.. . | .+.
T Consensus       399 ~V~sva~Sp~g~---------~l~Sgs~Dgtv~lwd~~~~-~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~-~-~-~~~  465 (524)
T 2j04_B          399 TITAIGVSRLHP---------MVLAGSADGSLIITNAARR-LLHGIKNSSATQKSLRLWKWDYSIKDDKYRI-D-S-SYE  465 (524)
T ss_dssp             CEEEEECCSSCC---------BCEEEETTTEEECCBSCSS-TTTCC------CCCCEEEECBCCSSSCEEEE-C-C-CCC
T ss_pred             ceEEEEeCCCCC---------eEEEEECCCEEEEEechHh-hccccccCccceeeeEEEEeccCCCCCeEEc-c-C-Cce
Confidence            999999999875         6899999999999998643 2111111     1125789999999986632 2 2 234


Q ss_pred             EEecC-CCeeEEEEec-CCCEEEEEEcCCCC---EEEEEECCCeEEEEEeeC
Q 008496          517 IWSLK-EGKIVKTYTG-NGGIFEVCWNKEGD---KIAACFANHTVCVLDFRM  563 (563)
Q Consensus       517 iw~~~-~~~~~~~~~~-~~~i~~l~w~~~g~---~la~~~~~~~v~v~~~~~  563 (563)
                      +|+.. ++.++.++.+ ...|++|+|+|++.   .||+|+.+|.|+||+++.
T Consensus       466 ~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~  517 (524)
T 2j04_B          466 VYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSL  517 (524)
T ss_dssp             CCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSC
T ss_pred             ecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEEccc
Confidence            44433 4555555554 46799999999964   999999999999999873

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=2.4e-37  Score=306.71  Aligned_cols=281  Identities=25%  Similarity=0.423  Sum_probs=244.8

Q ss_pred             ccCCCCeEEEEECCC-CCEEEEEeCCCeEEEEEcCCc------eeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEE
Q 008496          271 NEKSKDVTTLDWNGE-GTLLATGSYDGQARIWSTNGD------LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWD  343 (563)
Q Consensus       271 ~~~~~~V~~l~~s~~-g~~l~sg~~dg~i~vw~~~~~------~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd  343 (563)
                      .+|.+.|++|+|+|+ +++|+||+.||+|+||+....      ....+.+|..+|.+++|+|++++|++++.|+.|++|+
T Consensus        35 ~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~  114 (340)
T 4aow_A           35 KGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWD  114 (340)
T ss_dssp             CCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             CCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEe
Confidence            356788999999997 689999999999999997532      3457889999999999999999999999999999999


Q ss_pred             CCCCceeEEeeecccCeEEEecC-CCceEEEEeCCCeEEEEEcCCCcc-eeeecCCCcceeEEEECCCC--CEEEEEeCC
Q 008496          344 VKTEEWKQQFEFHSGPTLDVDWR-NNVSFATSSTDNMIYVCKIGENRP-IKTFAGHQGEVNCVKWDPTG--SLLASCSDD  419 (563)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~i~~~~~~~~~~-~~~~~~h~~~i~~~~~~~~~--~~las~s~d  419 (563)
                      ............+...+....+. ....+++++.|+.+++|+...... ...+.+|...+.+++|++++  .++++++.|
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d  194 (340)
T 4aow_A          115 LTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWD  194 (340)
T ss_dssp             TTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETT
T ss_pred             ecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCC
Confidence            99888777777777766666664 456788999999999999876543 44567899999999998865  578999999


Q ss_pred             CcEEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEE
Q 008496          420 VTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAF  499 (563)
Q Consensus       420 g~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~  499 (563)
                      +.|++||+.+++.+..+.+|...|++++|+|++.         +|++|+.||.|++||+++++++..+..+ ..|.+++|
T Consensus       195 ~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~---------~l~s~s~Dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~  264 (340)
T 4aow_A          195 KLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGS---------LCASGGKDGQAMLWDLNEGKHLYTLDGG-DIINALCF  264 (340)
T ss_dssp             SCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS---------EEEEEETTCEEEEEETTTTEEEEEEECS-SCEEEEEE
T ss_pred             CEEEEEECCCCceeeEecCCCCcEEEEEECCCCC---------EEEEEeCCCeEEEEEeccCceeeeecCC-ceEEeeec
Confidence            9999999999999999999999999999999875         7999999999999999999999888854 68999999


Q ss_pred             cCCCCEEEEEeCCCcEEEEecCCCeeEEEEec----------CCCEEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496          500 SPTGEYLASGSLDKSMHIWSLKEGKIVKTYTG----------NGGIFEVCWNKEGDKIAACFANHTVCVLDFR  562 (563)
Q Consensus       500 spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~----------~~~i~~l~w~~~g~~la~~~~~~~v~v~~~~  562 (563)
                      +|++.+++ ++.|+.|+|||++++.++..+..          ...|++++|+|+|++||+|+.||.|+|||++
T Consensus       265 ~~~~~~~~-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~  336 (340)
T 4aow_A          265 SPNRYWLC-AATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVT  336 (340)
T ss_dssp             CSSSSEEE-EEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEE
T ss_pred             CCCCceee-ccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCC
Confidence            99987655 56699999999999888777642          3568999999999999999999999999986

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=2.6e-38  Score=321.03  Aligned_cols=280  Identities=18%  Similarity=0.309  Sum_probs=252.6

Q ss_pred             ccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCc-------eeEeeccCCCCEEEEEeCCC----C---CEEEEeeCC
Q 008496          271 NEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGD-------LKCTLSKHKGPIFSLKWNKK----G---DYLLTGSCD  336 (563)
Q Consensus       271 ~~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~-------~~~~~~~h~~~V~~l~~~~~----~---~~l~s~s~D  336 (563)
                      ..|...|++++|+|  ++|++|+.||.|++|+....       ....+.+|..+|++++|+|+    +   ++|++++.|
T Consensus        13 ~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~d   90 (397)
T 1sq9_A           13 KAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFS   90 (397)
T ss_dssp             SCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETT
T ss_pred             hhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCC
Confidence            35678899999999  89999999999999998654       47788899999999999999    9   999999999


Q ss_pred             CcEEEEECCCCce-----eEEeeec-----ccCeEEEecC----C-Cce-EEEEeCCCeEEEEEcCC------Cccee--
Q 008496          337 KTAIVWDVKTEEW-----KQQFEFH-----SGPTLDVDWR----N-NVS-FATSSTDNMIYVCKIGE------NRPIK--  392 (563)
Q Consensus       337 ~~v~iwd~~~~~~-----~~~~~~~-----~~~~~~~~~~----~-~~~-~~~~~~d~~i~~~~~~~------~~~~~--  392 (563)
                      +.|++||+.++..     ...+..+     ...+.++.|.    + ... +++++.|+.|++|++..      ...+.  
T Consensus        91 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  170 (397)
T 1sq9_A           91 GDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWS  170 (397)
T ss_dssp             SCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCC
T ss_pred             CCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeecc
Confidence            9999999988876     7777777     5889999998    4 445 88899999999999988      66655  


Q ss_pred             ---ee-------cCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecc---c---CCCEEEEEEccCCCCCC
Q 008496          393 ---TF-------AGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLRE---H---SKEIYTIRWSPTGSGTN  456 (563)
Q Consensus       393 ---~~-------~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~---~---~~~i~~~~~~p~~~~~~  456 (563)
                         .+       ..|...|.+++|+|++ +|++|+.|+.|++||+++++.+..+..   |   ...|.+++|+|++.   
T Consensus       171 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~---  246 (397)
T 1sq9_A          171 PTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGS---  246 (397)
T ss_dssp             CEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTT---
T ss_pred             CcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCC---
Confidence               67       4488899999999999 999999999999999999999999988   8   99999999999875   


Q ss_pred             CCCCcEEEEEEeCC---CeEEEEeCCCCeEEEEecC-------------CCCCEEEEEEcCCCCEEEEEeCCCcEEEEec
Q 008496          457 NPNQQLILASASFD---STVKLWDVELGKLLYSLNG-------------HREPVYSLAFSPTGEYLASGSLDKSMHIWSL  520 (563)
Q Consensus       457 ~~~~~~~l~s~s~d---g~i~iwd~~~~~~~~~~~~-------------h~~~i~~l~~spdg~~lasgs~dg~v~iw~~  520 (563)
                            +|++++.|   |.|++||+++++.+..+.+             |..+|.+++|+|++++|++|+.||.|+|||+
T Consensus       247 ------~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~  320 (397)
T 1sq9_A          247 ------LLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDV  320 (397)
T ss_dssp             ------EEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEET
T ss_pred             ------EEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEc
Confidence                  78999999   9999999999999999998             9999999999999999999999999999999


Q ss_pred             CCCeeEEEEe------c----------------CCCEEEEEEcCCC----------CEEEEEECCCeEEEEEee
Q 008496          521 KEGKIVKTYT------G----------------NGGIFEVCWNKEG----------DKIAACFANHTVCVLDFR  562 (563)
Q Consensus       521 ~~~~~~~~~~------~----------------~~~i~~l~w~~~g----------~~la~~~~~~~v~v~~~~  562 (563)
                      .+++++..+.      .                ...|.+++|+|+|          +.|++|+.|+.|.|||++
T Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~  394 (397)
T 1sq9_A          321 KTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREA  394 (397)
T ss_dssp             TTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEE
T ss_pred             CCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcC
Confidence            9999999988      4                5679999999999          799999999999999986

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=1.1e-38  Score=320.58  Aligned_cols=291  Identities=16%  Similarity=0.241  Sum_probs=242.7

Q ss_pred             EecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEE
Q 008496          210 ILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLL  289 (563)
Q Consensus       210 ~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l  289 (563)
                      ++..|..+|++++|+|++++||+|+.|+.|++|++.++..           .....+    ..+...|++++|+|++++|
T Consensus         3 ~~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~-----------~~~~~~----~~h~~~v~~~~~~~~~~~l   67 (372)
T 1k8k_C            3 YHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKW-----------VQVHEL----KEHNGQVTGVDWAPDSNRI   67 (372)
T ss_dssp             EEESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEE-----------EEEEEE----ECCSSCEEEEEEETTTTEE
T ss_pred             eecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcE-----------Eeeeee----cCCCCcccEEEEeCCCCEE
Confidence            3456899999999999999999999999999999875420           011222    2346789999999999999


Q ss_pred             EEEeCCCeEEEEEcCCce---eEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecC
Q 008496          290 ATGSYDGQARIWSTNGDL---KCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR  366 (563)
Q Consensus       290 ~sg~~dg~i~vw~~~~~~---~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~  366 (563)
                      ++|+.||.|++|+.....   ...+..|...|.+++|+|++++|++++.|+.|++||+.++......             
T Consensus        68 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~-------------  134 (372)
T 1k8k_C           68 VTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVC-------------  134 (372)
T ss_dssp             EEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEE-------------
T ss_pred             EEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceee-------------
Confidence            999999999999986542   3345779999999999999999999999999999998765421100             


Q ss_pred             CCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeC------------------C
Q 008496          367 NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNM------------------K  428 (563)
Q Consensus       367 ~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~------------------~  428 (563)
                                              .....+|...|.+++|+|++++|++|+.|+.|++||+                  .
T Consensus       135 ------------------------~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~  190 (372)
T 1k8k_C          135 ------------------------KHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMP  190 (372)
T ss_dssp             ------------------------EEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCC
T ss_pred             ------------------------eeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccc
Confidence                                    1123467889999999999999999999999999995                  3


Q ss_pred             CCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEE
Q 008496          429 QDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLAS  508 (563)
Q Consensus       429 ~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~las  508 (563)
                      .+..+..+..|...|.+++|+|++.         +|++++.||.|++||+++++++..+..|..+|.+++|+|++.+|++
T Consensus       191 ~~~~~~~~~~~~~~v~~~~~~~~~~---------~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  261 (372)
T 1k8k_C          191 FGELMFESSSSCGWVHGVCFSANGS---------RVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAA  261 (372)
T ss_dssp             TTCEEEECCCCSSCEEEEEECSSSS---------EEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEE
T ss_pred             hhhheEecCCCCCeEEEEEECCCCC---------EEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEE
Confidence            6678888889999999999999875         7899999999999999999999999999999999999999999988


Q ss_pred             EeCCCcEEEEecCC--Cee--E------------------------------------EEE--ecCCCEEEEEEc-CCC-
Q 008496          509 GSLDKSMHIWSLKE--GKI--V------------------------------------KTY--TGNGGIFEVCWN-KEG-  544 (563)
Q Consensus       509 gs~dg~v~iw~~~~--~~~--~------------------------------------~~~--~~~~~i~~l~w~-~~g-  544 (563)
                      | .|+.|++|++.+  ++.  +                                    ..+  .....|.+++|. ++| 
T Consensus       262 ~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~  340 (372)
T 1k8k_C          262 G-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKA  340 (372)
T ss_dssp             E-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTT
T ss_pred             E-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCc
Confidence            8 899999999987  531  0                                    111  224579999977 677 


Q ss_pred             --CEEEEEECCCeEEEEEee
Q 008496          545 --DKIAACFANHTVCVLDFR  562 (563)
Q Consensus       545 --~~la~~~~~~~v~v~~~~  562 (563)
                        ++|++|+.||.|.|||++
T Consensus       341 ~~~~l~s~~~Dg~i~~W~~~  360 (372)
T 1k8k_C          341 KCSQFCTTGMDGGMSIWDVR  360 (372)
T ss_dssp             SCSEEEEEETTSEEEEEEHH
T ss_pred             ceeeEEEecCCCceEEEEec
Confidence              999999999999999975

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=9.8e-39  Score=318.91  Aligned_cols=292  Identities=20%  Similarity=0.343  Sum_probs=240.3

Q ss_pred             eEecCCCCceEEEEECCCCC-EEEEeeC---CCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECC
Q 008496          209 TILEGHTSEVCACAWSPAGS-LLASGSG---DSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG  284 (563)
Q Consensus       209 ~~l~~h~~~V~~~~~sp~~~-~latgs~---D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~  284 (563)
                      .++.+|...|++++|+|++. ++++|+.   |+.|+||++.++...           ....     ..+...|++++|+|
T Consensus        12 ~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~-----------~~~~-----~~~~~~v~~~~~~~   75 (357)
T 3i2n_A           12 HIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLK-----------LLRE-----IEKAKPIKCGTFGA   75 (357)
T ss_dssp             EEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEE-----------EEEE-----EEESSCEEEEECTT
T ss_pred             hhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCccc-----------ceee-----ecccCcEEEEEEcC
Confidence            46688999999999999986 5556665   999999998764311           0111     12356899999999


Q ss_pred             C---CCEEEEEeCCCeEEEEEcCC-c-eeEeeccCCCCEEEEE------eCCCCCEEEEeeCCCcEEEEECCCCc-eeEE
Q 008496          285 E---GTLLATGSYDGQARIWSTNG-D-LKCTLSKHKGPIFSLK------WNKKGDYLLTGSCDKTAIVWDVKTEE-WKQQ  352 (563)
Q Consensus       285 ~---g~~l~sg~~dg~i~vw~~~~-~-~~~~~~~h~~~V~~l~------~~~~~~~l~s~s~D~~v~iwd~~~~~-~~~~  352 (563)
                      +   |.+|++|+.||.|++|+... . ....+.+|..+|.++.      |+|++++|++++.|++|++||++++. ....
T Consensus        76 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~  155 (357)
T 3i2n_A           76 TSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVAN  155 (357)
T ss_dssp             CCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEE
T ss_pred             CCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCccee
Confidence            8   79999999999999999864 3 5678889999999995      57899999999999999999999876 5666


Q ss_pred             eeeccc----CeEEEe----cC-CCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECC---CCCEEEEEeCCC
Q 008496          353 FEFHSG----PTLDVD----WR-NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDP---TGSLLASCSDDV  420 (563)
Q Consensus       353 ~~~~~~----~~~~~~----~~-~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~---~~~~las~s~dg  420 (563)
                      +..+.+    .+.++.    |. +...+++++.|+.|++|++....... ...|...|.+++|+|   ++.+|++|+.||
T Consensus       156 ~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg  234 (357)
T 3i2n_A          156 MEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRW-ETNIKNGVCSLEFDRKDISMNKLVATSLEG  234 (357)
T ss_dssp             ECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEESCSSSSCCEEEEEESTT
T ss_pred             ccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceee-ecCCCCceEEEEcCCCCCCCCEEEEECCCC
Confidence            665544    666776    43 45678889999999999998887644 466889999999999   999999999999


Q ss_pred             cEEEEeCCCCceeeeec-----ccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC--------------
Q 008496          421 TAKIWNMKQDKYVHDLR-----EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG--------------  481 (563)
Q Consensus       421 ~i~iwd~~~~~~~~~~~-----~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~--------------  481 (563)
                      .|++||++++.....+.     .|...|++++|+|++.        .+|++|+.||.|++||++.+              
T Consensus       235 ~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~  306 (357)
T 3i2n_A          235 KFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNR--------ELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMG  306 (357)
T ss_dssp             EEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEE--------EEEEEEETTSEEEEEEEECCSCC--CCTTSCCCC
T ss_pred             eEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCC--------cEEEEEeCCCcEEEeecCCCcccccccCCCCccc
Confidence            99999998776655444     8999999999999763        37999999999999998753              


Q ss_pred             -----eEEEEecCCCCCEEEEEEcCCCCEEE-EEeCCCcEEEEecCCCee
Q 008496          482 -----KLLYSLNGHREPVYSLAFSPTGEYLA-SGSLDKSMHIWSLKEGKI  525 (563)
Q Consensus       482 -----~~~~~~~~h~~~i~~l~~spdg~~la-sgs~dg~v~iw~~~~~~~  525 (563)
                           +++..+.+|..+|++++|+|+|++|+ +|+.||.|+||++.+.+.
T Consensus       307 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~~  356 (357)
T 3i2n_A          307 VAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLNK  356 (357)
T ss_dssp             CCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC---
T ss_pred             cccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCccc
Confidence                 46778899999999999999999998 899999999999987653

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=3.6e-37  Score=304.78  Aligned_cols=285  Identities=18%  Similarity=0.336  Sum_probs=249.0

Q ss_pred             ecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEE
Q 008496          211 LEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLA  290 (563)
Q Consensus       211 l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~  290 (563)
                      ..+|...|++++|+|++++|++++ |+.+++|++.++.....     .  ..+.     ...+...|++++|+|++++|+
T Consensus        47 ~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~-----~--~~~~-----~~~~~~~v~~~~~~~~~~~l~  113 (337)
T 1gxr_A           47 TLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSP-----V--SQLD-----CLNRDNYIRSCKLLPDGCTLI  113 (337)
T ss_dssp             EECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSC-----S--EEEE-----CSCTTSBEEEEEECTTSSEEE
T ss_pred             eccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceee-----e--eccc-----ccCCCCcEEEEEEcCCCCEEE
Confidence            357999999999999999999998 99999999976532110     0  0111     113457899999999999999


Q ss_pred             EEeCCCeEEEEEcCCc---eeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecCC
Q 008496          291 TGSYDGQARIWSTNGD---LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN  367 (563)
Q Consensus       291 sg~~dg~i~vw~~~~~---~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~  367 (563)
                      +++.||.|++|+....   ....+..|...|.+++|+|++++|++++.|+.|++||+++++....+..|...+.++.|.+
T Consensus       114 ~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~  193 (337)
T 1gxr_A          114 VGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISN  193 (337)
T ss_dssp             EEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT
T ss_pred             EEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECC
Confidence            9999999999998753   4556788999999999999999999999999999999999999888988999999999975


Q ss_pred             C-ceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEEE
Q 008496          368 N-VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTI  446 (563)
Q Consensus       368 ~-~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~  446 (563)
                      + ..+++++.|+.|++|++...+++..+. |...+.+++|+|++++|++++.|+.|++||+.+.... .+..|...|.++
T Consensus       194 ~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~-~~~~~~~~v~~~  271 (337)
T 1gxr_A          194 DGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLHLHESCVLSL  271 (337)
T ss_dssp             TSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EECCCSSCEEEE
T ss_pred             CCCEEEEEecCCcEEEEECCCCceEeeec-CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeE-EEcCCccceeEE
Confidence            4 578889999999999999888777764 7788999999999999999999999999999887654 577899999999


Q ss_pred             EEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEec
Q 008496          447 RWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSL  520 (563)
Q Consensus       447 ~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~  520 (563)
                      +|+|++.         +|++++.||.|++||+.+++.+... .|..+|.+++|+|++++|++++.||.|++|++
T Consensus       272 ~~~~~~~---------~l~~~~~dg~i~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~  335 (337)
T 1gxr_A          272 KFAYCGK---------WFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             EECTTSS---------EEEEEETTSEEEEEETTTCCEEEEE-ECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             EECCCCC---------EEEEecCCCcEEEEECCCCeEEEEe-cCCCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence            9999875         7899999999999999999888554 47889999999999999999999999999996

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=2.1e-37  Score=314.96  Aligned_cols=342  Identities=17%  Similarity=0.226  Sum_probs=242.8

Q ss_pred             ceeEecCCCCceEEEEECC-CCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECC-
Q 008496          207 DVTILEGHTSEVCACAWSP-AGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG-  284 (563)
Q Consensus       207 ~~~~l~~h~~~V~~~~~sp-~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~-  284 (563)
                      ...++.+|.+.|++++|+| ++++||+|+.||.|++|++.++.........    ............+...|++++|+| 
T Consensus        35 ~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~v~~~~~~~~  110 (408)
T 4a11_B           35 DRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCK----AVCSIGRDHPDVHRYSVETVQWYPH  110 (408)
T ss_dssp             TEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEEC----EEEEECTTCTTCCSSCEEEEEECTT
T ss_pred             ceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEecc----ccccccccccccCCCcEEEEEEccC
Confidence            3467789999999999999 9999999999999999999875432211000    000111122234678899999999 


Q ss_pred             CCCEEEEEeCCCeEEEEEcCCceeEeeccCCCCEEEEEeCCCC---CEEEEeeCCCcEEEEECCCCceeEEeeecccCeE
Q 008496          285 EGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKG---DYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTL  361 (563)
Q Consensus       285 ~g~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~---~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~  361 (563)
                      ++.+|++++.||.|++|+...........+...+.++.|+|.+   .++++++.|+.|++||++++.....+..|..++.
T Consensus       111 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~  190 (408)
T 4a11_B          111 DTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEIL  190 (408)
T ss_dssp             CTTCEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEE
T ss_pred             CCcEEEEEeCCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEE
Confidence            7889999999999999998765544444588899999999854   4999999999999999999999999999999999


Q ss_pred             EEecCCCc--eEEEEeCCCeEEEEEcCCCc-ceeee---------------cCCCcceeEEEECCCCCEEEEEeCCCcEE
Q 008496          362 DVDWRNNV--SFATSSTDNMIYVCKIGENR-PIKTF---------------AGHQGEVNCVKWDPTGSLLASCSDDVTAK  423 (563)
Q Consensus       362 ~~~~~~~~--~~~~~~~d~~i~~~~~~~~~-~~~~~---------------~~h~~~i~~~~~~~~~~~las~s~dg~i~  423 (563)
                      ++.|.++.  .+++++.|+.|++|++.... ++..+               .+|...|.+++|+|++++|++++.||.|+
T Consensus       191 ~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  270 (408)
T 4a11_B          191 AVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMR  270 (408)
T ss_dssp             EEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             EEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEE
Confidence            99997664  48899999999999997654 33333               57889999999999999999999999999


Q ss_pred             EEeCCCCceeeeecccCC----CEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEE
Q 008496          424 IWNMKQDKYVHDLREHSK----EIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAF  499 (563)
Q Consensus       424 iwd~~~~~~~~~~~~~~~----~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~  499 (563)
                      +||+.+++....+..+..    ......+....        ...++.++.|+.|++||+.+++++..+.+|..+|++++|
T Consensus       271 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~  342 (408)
T 4a11_B          271 LWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGC--------SSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVF  342 (408)
T ss_dssp             EEETTTCCBCCCCCCCCCCCCSSCCCCEECCSS--------SSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEE
T ss_pred             EEECCCCccceeccccccccccccceeEEecCC--------CceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEE
Confidence            999998876544332211    01111111111        113566778999999999999999999999999999999


Q ss_pred             cCCCCEEEEEeCCCcEEEEecCCCeeEEEEecCCCEEEEEEcCC-CCEEEEEECCCeEEEEEee
Q 008496          500 SPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKE-GDKIAACFANHTVCVLDFR  562 (563)
Q Consensus       500 spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~~~~i~~l~w~~~-g~~la~~~~~~~v~v~~~~  562 (563)
                      +|++++|++|+.||.|++|++.+++.+........  ...+++. ....+.+..++.+.||+..
T Consensus       343 s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~W~~~  404 (408)
T 4a11_B          343 QSNFQELYSGSRDCNILAWVPSLYEPVPDDDETTT--KSQLNPAFEDAWSSSDEEGGTSAWSHP  404 (408)
T ss_dssp             ETTTTEEEEEETTSCEEEEEECC-----------------------------------------
T ss_pred             cCCCCEEEEECCCCeEEEEeCCCCCccCCCCceEe--ccccccccceeecccCccCceeecCCc
Confidence            99999999999999999999999887765433221  2234442 2344455677889999754

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=9.1e-38  Score=305.36  Aligned_cols=249  Identities=19%  Similarity=0.333  Sum_probs=224.8

Q ss_pred             ceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecCC-CceEEEEeCCCeEEEEE
Q 008496          306 DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN-NVSFATSSTDNMIYVCK  384 (563)
Q Consensus       306 ~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~i~~~~  384 (563)
                      .+..++.+|.+.|++++|+|++++|++|+.||+|++||+.++.....+..|..++..+.|.. ...+++++.|+.|++|+
T Consensus         4 ~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd   83 (304)
T 2ynn_A            4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFN   83 (304)
T ss_dssp             CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEE
T ss_pred             eeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEE
Confidence            34567889999999999999999999999999999999999999999999999999998865 45688999999999999


Q ss_pred             cCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCC-ceeeeecccCCCEEEEEEccCCCCCCCCCCcEE
Q 008496          385 IGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD-KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLI  463 (563)
Q Consensus       385 ~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~-~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~  463 (563)
                      +.+.+.+..+.+|.+.|++++|+|++++|++|+.|++|++||++++ .....+.+|...|.+++|+|.+.        .+
T Consensus        84 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~--------~~  155 (304)
T 2ynn_A           84 YNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDP--------ST  155 (304)
T ss_dssp             TTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCT--------TE
T ss_pred             CCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCC--------CE
Confidence            9999999999999999999999999999999999999999999877 45567889999999999999532        27


Q ss_pred             EEEEeCCCeEEEEeCCCCeEEEEe-cCCCCCEEEEEEcC--CCCEEEEEeCCCcEEEEecCCCeeEEEEecC-CCEEEEE
Q 008496          464 LASASFDSTVKLWDVELGKLLYSL-NGHREPVYSLAFSP--TGEYLASGSLDKSMHIWSLKEGKIVKTYTGN-GGIFEVC  539 (563)
Q Consensus       464 l~s~s~dg~i~iwd~~~~~~~~~~-~~h~~~i~~l~~sp--dg~~lasgs~dg~v~iw~~~~~~~~~~~~~~-~~i~~l~  539 (563)
                      |++|+.|++|++||++.+.....+ .+|...|..++|+|  ++.+|++|+.|++|+|||+++++++.++.++ ..|..++
T Consensus       156 l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~  235 (304)
T 2ynn_A          156 FASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAV  235 (304)
T ss_dssp             EEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEE
T ss_pred             EEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEE
Confidence            999999999999999887765555 45668899999987  7889999999999999999999999998865 5689999


Q ss_pred             EcCCCCEEEEEECCCeEEEEEee
Q 008496          540 WNKEGDKIAACFANHTVCVLDFR  562 (563)
Q Consensus       540 w~~~g~~la~~~~~~~v~v~~~~  562 (563)
                      |+|++..||+|+.|++|.|||++
T Consensus       236 ~~p~~~~l~s~s~Dg~i~iWd~~  258 (304)
T 2ynn_A          236 FHPTLPIIISGSEDGTLKIWNSS  258 (304)
T ss_dssp             ECSSSSEEEEEETTSCEEEEETT
T ss_pred             ECCCCCEEEEEcCCCeEEEEECC
Confidence            99999999999999999999975

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=4.8e-38  Score=320.69  Aligned_cols=246  Identities=27%  Similarity=0.475  Sum_probs=231.4

Q ss_pred             eEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecCCC-ceEEEEeCCCeEEEEEcC
Q 008496          308 KCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNN-VSFATSSTDNMIYVCKIG  386 (563)
Q Consensus       308 ~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~i~~~~~~  386 (563)
                      ...+.+|.++|++++|+|++.+|++|+.|++|++||+.+++....+..|...+.++.|.++ ..+++++.|+.|++|++.
T Consensus       101 ~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~  180 (410)
T 1vyh_C          101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQ  180 (410)
T ss_dssp             SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETT
T ss_pred             eEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Confidence            3457789999999999999999999999999999999999999999999999999999754 578899999999999999


Q ss_pred             CCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEE
Q 008496          387 ENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILAS  466 (563)
Q Consensus       387 ~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s  466 (563)
                      ....+..+.+|...|.+++|+|++++|++|+.|++|++||+.++.++..+.+|...|.++.|+|++.         +|++
T Consensus       181 ~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~---------~l~s  251 (410)
T 1vyh_C          181 GFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGT---------LIAS  251 (410)
T ss_dssp             SSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSS---------EEEE
T ss_pred             CCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCC---------EEEE
Confidence            9999999999999999999999999999999999999999999999999999999999999999875         7999


Q ss_pred             EeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCC--------------------CCEEEEEeCCCcEEEEecCCCeeE
Q 008496          467 ASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPT--------------------GEYLASGSLDKSMHIWSLKEGKIV  526 (563)
Q Consensus       467 ~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spd--------------------g~~lasgs~dg~v~iw~~~~~~~~  526 (563)
                      |+.|++|++||+.++++...+.+|..+|.+++|+|+                    |.+|++|+.|+.|++||+.+++++
T Consensus       252 ~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~  331 (410)
T 1vyh_C          252 CSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCL  331 (410)
T ss_dssp             EETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEE
T ss_pred             EcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceE
Confidence            999999999999999999999999999999999997                    678999999999999999999999


Q ss_pred             EEEecC-CCEEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496          527 KTYTGN-GGIFEVCWNKEGDKIAACFANHTVCVLDFR  562 (563)
Q Consensus       527 ~~~~~~-~~i~~l~w~~~g~~la~~~~~~~v~v~~~~  562 (563)
                      .++.++ ..|.+++|+|+|++|++|+.|+.|.|||++
T Consensus       332 ~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~  368 (410)
T 1vyh_C          332 MTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYK  368 (410)
T ss_dssp             EEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCT
T ss_pred             EEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC
Confidence            988765 468999999999999999999999999975

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=1.9e-38  Score=327.36  Aligned_cols=301  Identities=14%  Similarity=0.280  Sum_probs=232.0

Q ss_pred             CCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccc--------cCCCCeEEEEECCC
Q 008496          214 HTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTN--------EKSKDVTTLDWNGE  285 (563)
Q Consensus       214 h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~V~~l~~s~~  285 (563)
                      |.+.|++++|+|+|++||+|+.||.|+||++.++..........  ......+.++..        .....|++++|+|+
T Consensus        27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~--~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~  104 (447)
T 3dw8_B           27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGE--YNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQ  104 (447)
T ss_dssp             GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCC--EEEEEEEECCCCEEEGGGTEEECCCCCEEEECCC
T ss_pred             ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccc--eeEecccccccccccccccccccCceEEEEEcCC
Confidence            67889999999999999999999999999998654211111111  111222222210        00167999999999


Q ss_pred             C--CEEEEEeCCCeEEEEEcCCcee-----------------------------------------EeeccCCCCEEEEE
Q 008496          286 G--TLLATGSYDGQARIWSTNGDLK-----------------------------------------CTLSKHKGPIFSLK  322 (563)
Q Consensus       286 g--~~l~sg~~dg~i~vw~~~~~~~-----------------------------------------~~~~~h~~~V~~l~  322 (563)
                      +  .+|++|+.||.|++|+......                                         ....+|..+|++++
T Consensus       105 ~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~  184 (447)
T 3dw8_B          105 KNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSIS  184 (447)
T ss_dssp             CSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEE
T ss_pred             CCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEE
Confidence            8  8999999999999999753211                                         11367999999999


Q ss_pred             eCCCCCEEEEeeCCCcEEEEECCCCc-eeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcce
Q 008496          323 WNKKGDYLLTGSCDKTAIVWDVKTEE-WKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEV  401 (563)
Q Consensus       323 ~~~~~~~l~s~s~D~~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i  401 (563)
                      |+|++++|++| .|++|++||+++.. ...                              +.++.    ...+.+|...|
T Consensus       185 ~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~------------------------------~~~~~----~~~~~~~~~~v  229 (447)
T 3dw8_B          185 INSDYETYLSA-DDLRINLWHLEITDRSFN------------------------------IVDIK----PANMEELTEVI  229 (447)
T ss_dssp             ECTTSSEEEEE-CSSEEEEEETTEEEEEEE------------------------------EEECC----CSSGGGCCCCE
T ss_pred             EcCCCCEEEEe-CCCeEEEEECCCCCceee------------------------------eeecc----cccccccCcce
Confidence            99999999998 79999999997422 111                              11111    12466899999


Q ss_pred             eEEEECCCC-CEEEEEeCCCcEEEEeCCCCce----eeeecccCC------------CEEEEEEccCCCCCCCCCCcEEE
Q 008496          402 NCVKWDPTG-SLLASCSDDVTAKIWNMKQDKY----VHDLREHSK------------EIYTIRWSPTGSGTNNPNQQLIL  464 (563)
Q Consensus       402 ~~~~~~~~~-~~las~s~dg~i~iwd~~~~~~----~~~~~~~~~------------~i~~~~~~p~~~~~~~~~~~~~l  464 (563)
                      ++++|+|++ ++|++|+.||+|++||++++..    +..+..|..            .|.+++|+|++.         +|
T Consensus       230 ~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~---------~l  300 (447)
T 3dw8_B          230 TAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGR---------YM  300 (447)
T ss_dssp             EEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSS---------EE
T ss_pred             EEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCC---------EE
Confidence            999999998 9999999999999999998886    677777776            899999999875         78


Q ss_pred             EEEeCCCeEEEEeCCC-CeEEEEecCCCCC---------------EEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEE
Q 008496          465 ASASFDSTVKLWDVEL-GKLLYSLNGHREP---------------VYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKT  528 (563)
Q Consensus       465 ~s~s~dg~i~iwd~~~-~~~~~~~~~h~~~---------------i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~  528 (563)
                      ++++. +.|++||++. ++++..+.+|...               ++.++|+|+|++|++|+.||.|+|||+.+++.+..
T Consensus       301 ~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~  379 (447)
T 3dw8_B          301 MTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITL  379 (447)
T ss_dssp             EEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEE
T ss_pred             EEeeC-CeEEEEeCCCCccccceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceee
Confidence            88888 9999999997 8888888888532               33599999999999999999999999999887642


Q ss_pred             Ee---------------------------------cCCCEEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496          529 YT---------------------------------GNGGIFEVCWNKEGDKIAACFANHTVCVLDFR  562 (563)
Q Consensus       529 ~~---------------------------------~~~~i~~l~w~~~g~~la~~~~~~~v~v~~~~  562 (563)
                      ..                                 ....|..++|+|+|+.||+++.|+ +.+|.-+
T Consensus       380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~~  445 (447)
T 3dw8_B          380 EASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQDK  445 (447)
T ss_dssp             ECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEECC
T ss_pred             eecccccccccccCCccccccCCcccccccccccccCCceeEEEECCCCCEEEEEecce-eeeeccc
Confidence            21                                 123578899999999999998775 7788654

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=1.9e-37  Score=305.26  Aligned_cols=246  Identities=26%  Similarity=0.402  Sum_probs=216.1

Q ss_pred             ccCCCCeEEEEECCCC-CEEEEEeCCCeEEEEEcCC------ceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEE
Q 008496          271 NEKSKDVTTLDWNGEG-TLLATGSYDGQARIWSTNG------DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWD  343 (563)
Q Consensus       271 ~~~~~~V~~l~~s~~g-~~l~sg~~dg~i~vw~~~~------~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd  343 (563)
                      ..|...|++++|+|++ ++|++|+.|+.|++|+..+      .....+.+|..+|.+++|+|++.+|++|+.|++|++||
T Consensus        14 ~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd   93 (319)
T 3frx_A           14 EGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWD   93 (319)
T ss_dssp             CCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             ccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEE
Confidence            4567889999999965 8999999999999999753      23457889999999999999999999999999999999


Q ss_pred             CCCCceeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEE
Q 008496          344 VKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAK  423 (563)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~  423 (563)
                      +.+++..                                         ..+.+|...|.+++|+|++.+|++|+.|++|+
T Consensus        94 ~~~~~~~-----------------------------------------~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~  132 (319)
T 3frx_A           94 VATGETY-----------------------------------------QRFVGHKSDVMSVDIDKKASMIISGSRDKTIK  132 (319)
T ss_dssp             TTTTEEE-----------------------------------------EEEECCSSCEEEEEECTTSCEEEEEETTSCEE
T ss_pred             CCCCCee-----------------------------------------EEEccCCCcEEEEEEcCCCCEEEEEeCCCeEE
Confidence            9876432                                         34567999999999999999999999999999


Q ss_pred             EEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCC
Q 008496          424 IWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTG  503 (563)
Q Consensus       424 iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg  503 (563)
                      +||++. ..+..+.+|...|.+++|.|.....   ....+|++++.|+.|++||++.++....+.+|..+|++++|+|+|
T Consensus       133 vwd~~~-~~~~~~~~h~~~v~~~~~~~~~~~~---~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g  208 (319)
T 3frx_A          133 VWTIKG-QCLATLLGHNDWVSQVRVVPNEKAD---DDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDG  208 (319)
T ss_dssp             EEETTS-CEEEEECCCSSCEEEEEECCC---------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTS
T ss_pred             EEECCC-CeEEEEeccCCcEEEEEEccCCCCC---CCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCC
Confidence            999974 5677888999999999999865321   122378999999999999999999999999999999999999999


Q ss_pred             CEEEEEeCCCcEEEEecCCCeeEEEEecCCCEEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496          504 EYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLDFR  562 (563)
Q Consensus       504 ~~lasgs~dg~v~iw~~~~~~~~~~~~~~~~i~~l~w~~~g~~la~~~~~~~v~v~~~~  562 (563)
                      ++||+|+.||.|+|||+.+++.+.++.....|.+++|+|+|..||++..+ .+.||++.
T Consensus       209 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~-~i~v~~~~  266 (319)
T 3frx_A          209 TLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATAT-GIKVFSLD  266 (319)
T ss_dssp             SEEEEEETTCEEEEEETTTTEEEEEEECCSCEEEEEECSSSSEEEEEETT-EEEEEEET
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEcCCCCEEEEEcCC-CcEEEEeC
Confidence            99999999999999999999999999888899999999999999998765 58898864

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=1e-38  Score=328.46  Aligned_cols=301  Identities=19%  Similarity=0.262  Sum_probs=232.2

Q ss_pred             eEecCCCCceEEEEECCC-CCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECC-CC
Q 008496          209 TILEGHTSEVCACAWSPA-GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG-EG  286 (563)
Q Consensus       209 ~~l~~h~~~V~~~~~sp~-~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~-~g  286 (563)
                      ..+.+|...|+|++|||. +++||+|+.||+|+|||+..+...           ...    ....|...|++|+|+| ++
T Consensus       113 ~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~-----------~~~----~~~gH~~~V~~l~f~p~~~  177 (435)
T 4e54_B          113 QKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKP-----------TFI----KGIGAGGSITGLKFNPLNT  177 (435)
T ss_dssp             CEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCC-----------EEE----CCCSSSCCCCEEEECSSCT
T ss_pred             ccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCce-----------eEE----EccCCCCCEEEEEEeCCCC
Confidence            355679999999999995 679999999999999998754321           011    1124567899999998 78


Q ss_pred             CEEEEEeCCCeEEEEEcCCceeEeecc---CCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEE
Q 008496          287 TLLATGSYDGQARIWSTNGDLKCTLSK---HKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDV  363 (563)
Q Consensus       287 ~~l~sg~~dg~i~vw~~~~~~~~~~~~---h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~  363 (563)
                      .+|++|+.||+|++||..+.....+..   +...+.+++|+|++.+|++|+.||+|++||++.. .+..+..|...+.++
T Consensus       178 ~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~-~~~~~~~h~~~v~~v  256 (435)
T 4e54_B          178 NQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGK-ELWNLRMHKKKVTHV  256 (435)
T ss_dssp             TEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSC-BCCCSBCCSSCEEEE
T ss_pred             CEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcc-eeEEEecccceEEee
Confidence            999999999999999998765544433   3446789999999999999999999999998754 455677888999999


Q ss_pred             ecCCC--ceEEEEeCCCeEEEEEcCCCccee---eecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecc
Q 008496          364 DWRNN--VSFATSSTDNMIYVCKIGENRPIK---TFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLRE  438 (563)
Q Consensus       364 ~~~~~--~~~~~~~~d~~i~~~~~~~~~~~~---~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~  438 (563)
                      .|.+.  ..+++++.|+.|++|++.......   ...+|...|++++|+|+|++|++|+.||+|+|||+.++.....+..
T Consensus       257 ~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~  336 (435)
T 4e54_B          257 ALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIP  336 (435)
T ss_dssp             EECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECC
T ss_pred             eecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEec
Confidence            99654  467889999999999998765433   3467999999999999999999999999999999999887776665


Q ss_pred             cCC------CEEEEEEccCCCCC---CCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEec-CCCCCEEEE-EEcCCCCEEE
Q 008496          439 HSK------EIYTIRWSPTGSGT---NNPNQQLILASASFDSTVKLWDVELGKLLYSLN-GHREPVYSL-AFSPTGEYLA  507 (563)
Q Consensus       439 ~~~------~i~~~~~~p~~~~~---~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~h~~~i~~l-~~spdg~~la  507 (563)
                      |..      .+....|+|.+...   ..++...+++++..++.|++||..+++++..+. +|...|.++ +|||+|++||
T Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~la  416 (435)
T 4e54_B          337 HPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLA  416 (435)
T ss_dssp             CCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEE
T ss_pred             ccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEE
Confidence            542      23345666655310   011111222233345689999999999988864 688889887 6999999999


Q ss_pred             EEeCCCcEEEEecCCCeeE
Q 008496          508 SGSLDKSMHIWSLKEGKIV  526 (563)
Q Consensus       508 sgs~dg~v~iw~~~~~~~~  526 (563)
                      +|+ |+.|+||++++|+..
T Consensus       417 sg~-d~~i~iW~~~~gk~r  434 (435)
T 4e54_B          417 SAM-GYHILIWSQQEARTR  434 (435)
T ss_dssp             EEC-SSEEEECCCC-----
T ss_pred             EEc-CCcEEEEECCcCeee
Confidence            886 789999999988753

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=5e-38  Score=314.30  Aligned_cols=252  Identities=21%  Similarity=0.289  Sum_probs=206.5

Q ss_pred             EecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEE
Q 008496          210 ILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLL  289 (563)
Q Consensus       210 ~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l  289 (563)
                      ...+|...|++++|+|++.+ ++++.||+|+|||+.++......             ......|...|++++|+|+|++|
T Consensus        89 ~~~~~~~~V~~~~~s~d~~~-l~~s~dg~v~lWd~~~~~~~~~~-------------~~~~~~h~~~V~~v~~spdg~~l  154 (357)
T 4g56_B           89 AGVQTEAGVTDVAWVSEKGI-LVASDSGAVELWEILEKESLLVN-------------KFAKYEHDDIVKTLSVFSDGTQA  154 (357)
T ss_dssp             EEEECSSCEEEEEEETTTEE-EEEETTSCEEEC--------CCC-------------CEEECCCSSCEEEEEECSSSSEE
T ss_pred             ccCCCCCCEEEEEEcCCCCE-EEEECCCEEEEeeccccceeEEE-------------eeccCCCCCCEEEEEECCCCCEE
Confidence            34578999999999999765 56788999999998765421100             00112356789999999999999


Q ss_pred             EEEeCCCeEEEEEcC-CceeEeeccCCCCEEEEEeCCCCC-EEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecCC
Q 008496          290 ATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGD-YLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN  367 (563)
Q Consensus       290 ~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~-~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~  367 (563)
                      ++|+.||.|++||.. +.....+.+|...|++++|+|++. .+++++.|++|++||+++++....+              
T Consensus       155 ~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~--------------  220 (357)
T 4g56_B          155 VSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRI--------------  220 (357)
T ss_dssp             EEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBC--------------
T ss_pred             EEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeee--------------
Confidence            999999999999976 566778899999999999999885 7899999999999999876533211              


Q ss_pred             CceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCC-CCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEEE
Q 008496          368 NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT-GSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTI  446 (563)
Q Consensus       368 ~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~-~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~  446 (563)
                                               .+..|...+.+++|+|+ +.+|++|+.|+.|++||+++++.+..+..|...|+++
T Consensus       221 -------------------------~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l  275 (357)
T 4g56_B          221 -------------------------DFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGL  275 (357)
T ss_dssp             -------------------------CCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEE
T ss_pred             -------------------------eeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEE
Confidence                                     22346677899999997 5689999999999999999999999999999999999


Q ss_pred             EEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEecCCC
Q 008496          447 RWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSP-TGEYLASGSLDKSMHIWSLKEG  523 (563)
Q Consensus       447 ~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp-dg~~lasgs~dg~v~iw~~~~~  523 (563)
                      +|+|++.        .+|++|+.|++|+|||+++++++..+ +|..+|++|+||| |+.+||+||.||+|++|++...
T Consensus       276 ~~sp~~~--------~~lasgs~D~~i~iwd~~~~~~~~~~-~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~  344 (357)
T 4g56_B          276 AYSYHSS--------PFLASISEDCTVAVLDADFSEVFRDL-SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSE  344 (357)
T ss_dssp             EECSSSS--------CCEEEEETTSCEEEECTTSCEEEEEC-CCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC--
T ss_pred             EEcCCCC--------CEEEEEeCCCEEEEEECCCCcEeEEC-CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCC
Confidence            9999864        27899999999999999999887655 7999999999999 7999999999999999999653

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.3e-37  Score=299.02  Aligned_cols=273  Identities=23%  Similarity=0.316  Sum_probs=243.9

Q ss_pred             cCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCC-ceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCC---
Q 008496          272 EKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTE---  347 (563)
Q Consensus       272 ~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~---  347 (563)
                      .|...|++++| +++.+|++|+.||.|++|+... .....+..|..+|.+++|+|++++|++++.|+.+++|++...   
T Consensus        16 ~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~   94 (313)
T 3odt_A           16 GHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGE   94 (313)
T ss_dssp             CCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTS
T ss_pred             CCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCC
Confidence            45678999999 9999999999999999999764 456678889999999999999999999999999999998654   


Q ss_pred             ceeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECC-CCCEEEEEeCCCcEEEEe
Q 008496          348 EWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDP-TGSLLASCSDDVTAKIWN  426 (563)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~-~~~~las~s~dg~i~iwd  426 (563)
                      .....+..|..++.++.| +...+++++.|+.|++|+  ...++..+.+|...+.+++|+| ++++|++++.|+.|++||
T Consensus        95 ~~~~~~~~~~~~i~~~~~-~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d  171 (313)
T 3odt_A           95 DPLYTLIGHQGNVCSLSF-QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQ  171 (313)
T ss_dssp             CC-CEECCCSSCEEEEEE-ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred             CcccchhhcccCEEEEEe-cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEe
Confidence            456667788889999999 566889999999999999  6677888899999999999988 899999999999999999


Q ss_pred             CCCCceeeeecc-cCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCE
Q 008496          427 MKQDKYVHDLRE-HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEY  505 (563)
Q Consensus       427 ~~~~~~~~~~~~-~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~  505 (563)
                        .......+.. |...+.+++|+|++          .+++++.||.|++||+++++.+..+.+|..+|++++|+|++ .
T Consensus       172 --~~~~~~~~~~~~~~~i~~~~~~~~~----------~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~  238 (313)
T 3odt_A          172 --NDKVIKTFSGIHNDVVRHLAVVDDG----------HFISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-D  238 (313)
T ss_dssp             --TTEEEEEECSSCSSCEEEEEEEETT----------EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-C
T ss_pred             --cCceEEEEeccCcccEEEEEEcCCC----------eEEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-C
Confidence              4555666666 89999999999976          38899999999999999999999999999999999999999 6


Q ss_pred             EEEEeCCCcEEEEecCCCeeEEEEecCC-CEEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496          506 LASGSLDKSMHIWSLKEGKIVKTYTGNG-GIFEVCWNKEGDKIAACFANHTVCVLDFR  562 (563)
Q Consensus       506 lasgs~dg~v~iw~~~~~~~~~~~~~~~-~i~~l~w~~~g~~la~~~~~~~v~v~~~~  562 (563)
                      |++|+.||.|++||+.+++++..+..+. .|..++|+|+|+ +++++.|+.|.|||++
T Consensus       239 l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~  295 (313)
T 3odt_A          239 IVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQE  295 (313)
T ss_dssp             EEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESC
T ss_pred             EEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCC
Confidence            8999999999999999999998887654 799999999998 5568899999999975

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=1.7e-37  Score=302.42  Aligned_cols=252  Identities=24%  Similarity=0.436  Sum_probs=207.7

Q ss_pred             cCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCC---ceeEeeccCCCCEEEEEeCCC--CCEEEEeeCCCcEEEEECCC
Q 008496          272 EKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNG---DLKCTLSKHKGPIFSLKWNKK--GDYLLTGSCDKTAIVWDVKT  346 (563)
Q Consensus       272 ~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~---~~~~~~~~h~~~V~~l~~~~~--~~~l~s~s~D~~v~iwd~~~  346 (563)
                      .|...|++++|+|+|++|++|+.||.|+||+..+   ....++.+|.++|++++|++.  +++|++|+.|++|++||+.+
T Consensus         7 ~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~   86 (297)
T 2pm7_B            7 AHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEEN   86 (297)
T ss_dssp             SCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSS
T ss_pred             CCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCC
Confidence            4567899999999999999999999999999863   456788999999999999863  89999999999999999876


Q ss_pred             CceeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCC--CCEEEEEeCCCcEEE
Q 008496          347 EEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT--GSLLASCSDDVTAKI  424 (563)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~--~~~las~s~dg~i~i  424 (563)
                      +.+.                                       .+..+.+|...|++++|+|+  +.+|++|+.|++|++
T Consensus        87 ~~~~---------------------------------------~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~  127 (297)
T 2pm7_B           87 GRWS---------------------------------------QIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSV  127 (297)
T ss_dssp             SCBC---------------------------------------CCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEE
T ss_pred             CceE---------------------------------------EEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEE
Confidence            5311                                       12345678899999999998  899999999999999


Q ss_pred             EeCCCCce--eeeecccCCCEEEEEEccCCCCCC----CCCCcEEEEEEeCCCeEEEEeCCCCe----EEEEecCCCCCE
Q 008496          425 WNMKQDKY--VHDLREHSKEIYTIRWSPTGSGTN----NPNQQLILASASFDSTVKLWDVELGK----LLYSLNGHREPV  494 (563)
Q Consensus       425 wd~~~~~~--~~~~~~~~~~i~~~~~~p~~~~~~----~~~~~~~l~s~s~dg~i~iwd~~~~~----~~~~~~~h~~~i  494 (563)
                      ||+++...  ...+.+|...|.+++|+|++....    .+....+|++|+.|++|+|||++.++    +...+.+|..+|
T Consensus       128 wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V  207 (297)
T 2pm7_B          128 VEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWV  207 (297)
T ss_dssp             EEBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCE
T ss_pred             EEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCce
Confidence            99987632  356678999999999999742100    00112379999999999999998765    667889999999


Q ss_pred             EEEEEcCCC---CEEEEEeCCCcEEEEecCCCe--eE-EEE---ecCCCEEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496          495 YSLAFSPTG---EYLASGSLDKSMHIWSLKEGK--IV-KTY---TGNGGIFEVCWNKEGDKIAACFANHTVCVLDFR  562 (563)
Q Consensus       495 ~~l~~spdg---~~lasgs~dg~v~iw~~~~~~--~~-~~~---~~~~~i~~l~w~~~g~~la~~~~~~~v~v~~~~  562 (563)
                      .+++|+|++   .+||+|+.|++|+|||+.++.  .. ..+   .....|++++|+|+|++||+++.|+.|.||+.+
T Consensus       208 ~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~  284 (297)
T 2pm7_B          208 RDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN  284 (297)
T ss_dssp             EEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred             EEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence            999999995   899999999999999997643  11 222   124579999999999999999999999999875

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=3e-39  Score=325.75  Aligned_cols=288  Identities=16%  Similarity=0.186  Sum_probs=225.5

Q ss_pred             EecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEE
Q 008496          210 ILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLL  289 (563)
Q Consensus       210 ~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l  289 (563)
                      ++..|..+|++++|+|++++||+|+.|+.|+||++.++..               ........+...|++++|+|++++|
T Consensus         6 ~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~---------------~~~~~~~~h~~~v~~~~~s~~~~~l   70 (377)
T 3dwl_C            6 VLHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGW---------------KHARTFSDHDKIVTCVDWAPKSNRI   70 (377)
T ss_dssp             EEEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEE---------------EECCCBCCCSSCEEEEEECTTTCCE
T ss_pred             eEecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCce---------------EEEEEEecCCceEEEEEEeCCCCEE
Confidence            3445678899999999999999999999999999875410               0111123456789999999999999


Q ss_pred             EEEeCCCeEEEEEcCCce----eEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEec
Q 008496          290 ATGSYDGQARIWSTNGDL----KCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDW  365 (563)
Q Consensus       290 ~sg~~dg~i~vw~~~~~~----~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~  365 (563)
                      ++|+.||.|++|+.....    ...+..|..+|++++|+|++++|++|+.|++|++||++++...               
T Consensus        71 ~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~---------------  135 (377)
T 3dwl_C           71 VTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDW---------------  135 (377)
T ss_dssp             EEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----C---------------
T ss_pred             EEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccc---------------
Confidence            999999999999986543    5677889999999999999999999999999999998765310               


Q ss_pred             CCCceEEEEeCCCeEEEEEcCCCcceeeecC-CCcceeEEEECCCCCEEEEEeCCCcEEEEeCC----------------
Q 008496          366 RNNVSFATSSTDNMIYVCKIGENRPIKTFAG-HQGEVNCVKWDPTGSLLASCSDDVTAKIWNMK----------------  428 (563)
Q Consensus       366 ~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~-h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~----------------  428 (563)
                                             .....+.+ |...|.+++|+|++++|++|+.|++|++||+.                
T Consensus       136 -----------------------~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~  192 (377)
T 3dwl_C          136 -----------------------WVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSR  192 (377)
T ss_dssp             -----------------------CCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSC
T ss_pred             -----------------------eeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccc
Confidence                                   01234455 88999999999999999999999999999985                


Q ss_pred             --CCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeE----EEEecCCCCCEEEEEEcCC
Q 008496          429 --QDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKL----LYSLNGHREPVYSLAFSPT  502 (563)
Q Consensus       429 --~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~----~~~~~~h~~~i~~l~~spd  502 (563)
                        .+.++..+ .|...|++++|+|++.         +|++++.||.|++||+.++++    +..+.+|..+|.+++|+|+
T Consensus       193 ~~~~~~~~~~-~~~~~v~~~~~sp~~~---------~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  262 (377)
T 3dwl_C          193 LPFNTVCAEY-PSGGWVHAVGFSPSGN---------ALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANE  262 (377)
T ss_dssp             CCEEEEEECC-CCSSSEEEEEECTTSS---------CEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEET
T ss_pred             cchhhhhhcc-cCCceEEEEEECCCCC---------EEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCC
Confidence              34456666 8999999999999875         689999999999999998876    7788899999999999999


Q ss_pred             CCEEEEEeCCCcEEEEecCCCe--e-------------------------E---------EEEe----------------
Q 008496          503 GEYLASGSLDKSMHIWSLKEGK--I-------------------------V---------KTYT----------------  530 (563)
Q Consensus       503 g~~lasgs~dg~v~iw~~~~~~--~-------------------------~---------~~~~----------------  530 (563)
                      |++|++|+.++.+ +|+...+.  .                         .         ..+.                
T Consensus       263 ~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  341 (377)
T 3dwl_C          263 SAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPT  341 (377)
T ss_dssp             TEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-------------------------CCCSS
T ss_pred             CCEEEEEcCCcEE-EEEeCCCceEEEeeecccccccccccccccccccccccccccccccccccchhhccccccccccCc
Confidence            9999999877766 66654211  0                         0         1111                


Q ss_pred             -cCCCEEEEEEcCCC-C---EEEEEECCCeEEEEEe
Q 008496          531 -GNGGIFEVCWNKEG-D---KIAACFANHTVCVLDF  561 (563)
Q Consensus       531 -~~~~i~~l~w~~~g-~---~la~~~~~~~v~v~~~  561 (563)
                       +...|.+++|.+.+ .   .|++|+.||.|+|||+
T Consensus       342 ~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl  377 (377)
T 3dwl_C          342 VHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL  377 (377)
T ss_dssp             SCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred             cccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence             33568899876543 3   6999999999999986

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.1e-38  Score=322.38  Aligned_cols=310  Identities=14%  Similarity=0.211  Sum_probs=248.6

Q ss_pred             EECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECC-CCCEEEEEeCCCeEEE
Q 008496          222 AWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG-EGTLLATGSYDGQARI  300 (563)
Q Consensus       222 ~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~-~g~~l~sg~~dg~i~v  300 (563)
                      .|+|++..+++++      .|+... .             .+..+   ...|...|++++|+| ++.+|++|+.||.|+|
T Consensus        34 ~f~~~~~~~~~~~------~w~~~g-~-------------~~~~~---~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~v   90 (437)
T 3gre_A           34 EFGPIQEIVRSPN------MGNLRG-K-------------LIATL---MENEPNSITSSAVSPGETPYLITGSDQGVIKI   90 (437)
T ss_dssp             GGCCCCCCCCCCC------GGGCCC-C-------------EEEEE---CTTTTSCEEEEEEECSSSCEEEEEETTSEEEE
T ss_pred             hcCCccccccccc------cccccc-e-------------EEeee---ccCCCCceEEEEECCCCCCEEEEecCCceEEE
Confidence            4788888877765      376331 1             11122   123567899999999 9999999999999999


Q ss_pred             EEcCC---c--eeEee-ccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECC---CCceeEEeeec------------ccC
Q 008496          301 WSTNG---D--LKCTL-SKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVK---TEEWKQQFEFH------------SGP  359 (563)
Q Consensus       301 w~~~~---~--~~~~~-~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~---~~~~~~~~~~~------------~~~  359 (563)
                      |+...   .  ....+ ..|.++|++++|+|++++|++|+.|++|++||+.   ++.....+..+            ...
T Consensus        91 wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  170 (437)
T 3gre_A           91 WNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEY  170 (437)
T ss_dssp             EEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCC
T ss_pred             eECcccccCcccceeeeccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccC
Confidence            99643   1  11112 2599999999999999999999999999999994   55544433322            223


Q ss_pred             eEEEe--c-CCCceEEEEeCCCeEEEEEcCCCcceeeecC--CCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceee
Q 008496          360 TLDVD--W-RNNVSFATSSTDNMIYVCKIGENRPIKTFAG--HQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVH  434 (563)
Q Consensus       360 ~~~~~--~-~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~--h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~  434 (563)
                      +.++.  + .+...+++++.|+.|++|++...+++..+.+  |.+.|++++|+|++++|++|+.||+|++||+++++++.
T Consensus       171 ~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~  250 (437)
T 3gre_A          171 AVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIR  250 (437)
T ss_dssp             EEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEE
T ss_pred             ceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEE
Confidence            33333  2 2356789999999999999999999999988  88999999999999999999999999999999999988


Q ss_pred             eec-ccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecC------------------------
Q 008496          435 DLR-EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNG------------------------  489 (563)
Q Consensus       435 ~~~-~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~------------------------  489 (563)
                      .+. .|...|.+++|+|...    ++ ..+|++|+.||.|++||+++++++..+.+                        
T Consensus       251 ~~~~~~~~~v~~~~~~~~~s----~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  325 (437)
T 3gre_A          251 SWSFGDHAPITHVEVCQFYG----KN-SVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCG  325 (437)
T ss_dssp             EEBCTTCEEEEEEEECTTTC----TT-EEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCC
T ss_pred             EEecCCCCceEEEEeccccC----CC-ccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecc
Confidence            876 7888999999987532    11 24789999999999999999998887764                        


Q ss_pred             --CCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEe-------------------------------------
Q 008496          490 --HREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYT-------------------------------------  530 (563)
Q Consensus       490 --h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~-------------------------------------  530 (563)
                        |..+|++++|+ ++++|++|+.||.|++||+.+++.+..+.                                     
T Consensus       326 ~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  404 (437)
T 3gre_A          326 IRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSL  404 (437)
T ss_dssp             CCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-----------
T ss_pred             cccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCccc
Confidence              44568888999 77999999999999999999988666554                                     


Q ss_pred             -cCCCEEEEEEcCC--CCEEEEEECCCeEEEEE
Q 008496          531 -GNGGIFEVCWNKE--GDKIAACFANHTVCVLD  560 (563)
Q Consensus       531 -~~~~i~~l~w~~~--g~~la~~~~~~~v~v~~  560 (563)
                       ....|.+++|+++  +.+|++|..||.|.||+
T Consensus       405 ~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~  437 (437)
T 3gre_A          405 YHHDIINSISTCEVDETPLLVACDNSGLIGIFQ  437 (437)
T ss_dssp             --CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred             ccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence             3457899999998  77999999999999995

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=4e-38  Score=309.67  Aligned_cols=255  Identities=24%  Similarity=0.369  Sum_probs=200.5

Q ss_pred             eEecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECC--CC
Q 008496          209 TILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG--EG  286 (563)
Q Consensus       209 ~~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~--~g  286 (563)
                      .++.+|.+.|++++|+|+|++||||+.|++|+|||+.++..           ..+..+.    .|...|++++|++  ++
T Consensus         7 ~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~-----------~~~~~l~----gH~~~V~~v~~~~~~~~   71 (316)
T 3bg1_A            7 TVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQ-----------ILIADLR----GHEGPVWQVAWAHPMYG   71 (316)
T ss_dssp             -------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEE-----------EEEEEEE----CCSSCEEEEEECCGGGS
T ss_pred             eecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCc-----------EEEEEEc----CCCccEEEEEeCCCCCC
Confidence            35679999999999999999999999999999999865321           1112222    3567899999986  48


Q ss_pred             CEEEEEeCCCeEEEEEcCCc---eeEeeccCCCCEEEEEeCCC--CCEEEEeeCCCcEEEEECCCCceeEEeeecccCeE
Q 008496          287 TLLATGSYDGQARIWSTNGD---LKCTLSKHKGPIFSLKWNKK--GDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTL  361 (563)
Q Consensus       287 ~~l~sg~~dg~i~vw~~~~~---~~~~~~~h~~~V~~l~~~~~--~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~  361 (563)
                      ++|++|+.|+.|++|+....   ....+.+|..+|.+++|+|+  +.+|++|+.|++|++||++++....          
T Consensus        72 ~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~----------  141 (316)
T 3bg1_A           72 NILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWE----------  141 (316)
T ss_dssp             SCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEE----------
T ss_pred             CEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcc----------
Confidence            99999999999999998642   45567899999999999998  7899999999999999987542100          


Q ss_pred             EEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCC-----------------CCEEEEEeCCCcEEE
Q 008496          362 DVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT-----------------GSLLASCSDDVTAKI  424 (563)
Q Consensus       362 ~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~-----------------~~~las~s~dg~i~i  424 (563)
                                                  ....+.+|...|.+++|+|+                 +++|++|+.|++|++
T Consensus       142 ----------------------------~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~l  193 (316)
T 3bg1_A          142 ----------------------------VKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKL  193 (316)
T ss_dssp             ----------------------------ECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCE
T ss_pred             ----------------------------eeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEE
Confidence                                        01234567777777777776                 478999999999999


Q ss_pred             EeCCCC---ceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC---e-EEEEecCCCCCEEEE
Q 008496          425 WNMKQD---KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG---K-LLYSLNGHREPVYSL  497 (563)
Q Consensus       425 wd~~~~---~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~---~-~~~~~~~h~~~i~~l  497 (563)
                      ||++..   ..+..+.+|...|.+++|+|++..     ...+|++|+.||+|+|||+...   . ....+..|..+|+++
T Consensus       194 Wd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~-----~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v  268 (316)
T 3bg1_A          194 WKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGL-----PTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHV  268 (316)
T ss_dssp             EEECTTSCEEEEECCBCCSSCEEEEECCCCSSC-----SCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEE
T ss_pred             EEeCCCCccceeeecccCCCceEEEEecCCCCC-----CCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEE
Confidence            999755   466788899999999999998621     0127999999999999998762   1 123345688999999


Q ss_pred             EEcCCCCEEEEEeCCCcEEEEecC
Q 008496          498 AFSPTGEYLASGSLDKSMHIWSLK  521 (563)
Q Consensus       498 ~~spdg~~lasgs~dg~v~iw~~~  521 (563)
                      +|+|+|++||+|+.|+.|+||+..
T Consensus       269 ~~sp~g~~las~~~D~~v~lw~~~  292 (316)
T 3bg1_A          269 SWSITANILAVSGGDNKVTLWKES  292 (316)
T ss_dssp             EECTTTCCEEEEESSSCEEEEEEC
T ss_pred             EEcCCCCEEEEEcCCCeEEEEEEC
Confidence            999999999999999999999975

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.9e-37  Score=304.52  Aligned_cols=251  Identities=27%  Similarity=0.505  Sum_probs=197.2

Q ss_pred             CCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEE
Q 008496          213 GHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATG  292 (563)
Q Consensus       213 ~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg  292 (563)
                      +|...|++++|+|++++||+|+.|++|+||++.......      .....+..+    ..|...|++++|+|+|++|++|
T Consensus        56 ~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~------~~~~~~~~~----~~h~~~V~~v~~sp~g~~las~  125 (330)
T 2hes_X           56 AHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRT------FEMDLLAII----EGHENEVKGVAWSNDGYYLATC  125 (330)
T ss_dssp             CCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------------CCCEEEEEE----C----CEEEEEECTTSCEEEEE
T ss_pred             CccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCcc------ccceeEEEE----cCCCCcEEEEEECCCCCEEEEE
Confidence            399999999999999999999999999999985421100      000111122    2356789999999999999999


Q ss_pred             eCCCeEEEEEcC-C----ceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecCC
Q 008496          293 SYDGQARIWSTN-G----DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN  367 (563)
Q Consensus       293 ~~dg~i~vw~~~-~----~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~  367 (563)
                      +.|+.|++|+.. .    .....+.+|..+|.+++|+|++.+|++|+.|++|++||+.++..                  
T Consensus       126 s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~------------------  187 (330)
T 2hes_X          126 SRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDW------------------  187 (330)
T ss_dssp             ETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEE------------------
T ss_pred             eCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCe------------------
Confidence            999999999983 2    24557889999999999999999999999999999999765421                  


Q ss_pred             CceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCC--CCEEEEEeCCCcEEEEeCCCC--------ceeeeec
Q 008496          368 NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT--GSLLASCSDDVTAKIWNMKQD--------KYVHDLR  437 (563)
Q Consensus       368 ~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~--~~~las~s~dg~i~iwd~~~~--------~~~~~~~  437 (563)
                                           .++..+.+|.+.|.+++|+|+  +.+|++|+.|++|++||+..+        .+...+.
T Consensus       188 ---------------------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~  246 (330)
T 2hes_X          188 ---------------------ECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILP  246 (330)
T ss_dssp             ---------------------EEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECC
T ss_pred             ---------------------eEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecc
Confidence                                 124567889999999999998  778999999999999998654        3344454


Q ss_pred             c-cCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCe--EEEE-ecCCCC-CEEEEEEcC--CCCEEEEEe
Q 008496          438 E-HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK--LLYS-LNGHRE-PVYSLAFSP--TGEYLASGS  510 (563)
Q Consensus       438 ~-~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~--~~~~-~~~h~~-~i~~l~~sp--dg~~lasgs  510 (563)
                      . |...|++++|++.+          +|++++.||.|+|||...+.  .+.. +.+|.. .|++++|+|  ++++||+|+
T Consensus       247 ~~h~~~v~~v~~s~~~----------~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s  316 (330)
T 2hes_X          247 DVHKRQVYNVAWGFNG----------LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGG  316 (330)
T ss_dssp             SCCSSCEEEEEECTTS----------CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEE
T ss_pred             cccccceEEEEEcCCC----------EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEec
Confidence            4 88999999998654          58999999999999998774  3333 467877 899999999  789999999


Q ss_pred             CCCcEEEEecCC
Q 008496          511 LDKSMHIWSLKE  522 (563)
Q Consensus       511 ~dg~v~iw~~~~  522 (563)
                      .||+|+||++.+
T Consensus       317 ~Dg~v~~W~~~~  328 (330)
T 2hes_X          317 DDGIVNFWSLEK  328 (330)
T ss_dssp             TTSEEEEEEC--
T ss_pred             CCCcEEEEEecc
Confidence            999999999864

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=5.3e-38  Score=315.05  Aligned_cols=289  Identities=14%  Similarity=0.134  Sum_probs=221.9

Q ss_pred             CceEEEEECCCCCEEEEeeCCC-------cEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCE
Q 008496          216 SEVCACAWSPAGSLLASGSGDS-------TARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTL  288 (563)
Q Consensus       216 ~~V~~~~~sp~~~~latgs~D~-------~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~  288 (563)
                      .+|++++|+|++++||+||.|.       .|++|++.........     .......  .....+...|.+++++  +..
T Consensus        15 ~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~-----~~~~~~~--~~l~~~~~~v~s~~~~--~~~   85 (365)
T 4h5i_A           15 YPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKE-----QFHILSE--FALEDNDDSPTAIDAS--KGI   85 (365)
T ss_dssp             SCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHH-----HEEEEEE--EECCTTSCCCCEEEEE--TTE
T ss_pred             CCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceee-----eeeeeeE--EEccCCCCceEEEEeC--CCE
Confidence            4799999999999999998754       4999998754321100     0001111  1112344567777765  456


Q ss_pred             EEEE-----------eCCCeEEEEEcCCc--eeE---e-----eccCCCCEEEEEeCCCCCEEEE--eeCCCcEEEEECC
Q 008496          289 LATG-----------SYDGQARIWSTNGD--LKC---T-----LSKHKGPIFSLKWNKKGDYLLT--GSCDKTAIVWDVK  345 (563)
Q Consensus       289 l~sg-----------~~dg~i~vw~~~~~--~~~---~-----~~~h~~~V~~l~~~~~~~~l~s--~s~D~~v~iwd~~  345 (563)
                      +++|           +.|+.+|+|+....  ...   .     ...+...+.+++|+|+|+++++  ++.|++|+|||+.
T Consensus        86 ~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~  165 (365)
T 4h5i_A           86 ILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPS  165 (365)
T ss_dssp             EEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETT
T ss_pred             EEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECC
Confidence            6665           45678999986432  111   1     1234456899999999999764  4578999999999


Q ss_pred             CCceeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcce--eeecCCCcceeEEEECCCCCEEEEEeCCC---
Q 008496          346 TEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPI--KTFAGHQGEVNCVKWDPTGSLLASCSDDV---  420 (563)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~--~~~~~h~~~i~~~~~~~~~~~las~s~dg---  420 (563)
                      +++.+..+. |...+.++.|.++..+++++.++.+.+|+...+..+  ....+|...|.+++|+|+++++++++.|+   
T Consensus       166 ~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~  244 (365)
T 4h5i_A          166 DLTEKFEIE-TRGEVKDLHFSTDGKVVAYITGSSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKG  244 (365)
T ss_dssp             TTEEEEEEE-CSSCCCEEEECTTSSEEEEECSSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCC
T ss_pred             CCcEEEEeC-CCCceEEEEEccCCceEEeccceeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcce
Confidence            999888775 667799999987766655555667777777666544  34567888999999999999999999887   


Q ss_pred             -cEEEEeCCCCce----eeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEe-cCCCCCE
Q 008496          421 -TAKIWNMKQDKY----VHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSL-NGHREPV  494 (563)
Q Consensus       421 -~i~iwd~~~~~~----~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~~h~~~i  494 (563)
                       .+++|++.....    ...+..|...|++++|+|++.         +||+|+.|++|+|||+++++++..+ .+|..+|
T Consensus       245 ~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~---------~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V  315 (365)
T 4h5i_A          245 IVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGE---------LAVLASNDNSIALVKLKDLSMSKIFKQAHSFAI  315 (365)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSC---------EEEEEETTSCEEEEETTTTEEEEEETTSSSSCE
T ss_pred             eEEeecccccceecceeeeeecCCCCCeEeEEECCCCC---------ceEEEcCCCEEEEEECCCCcEEEEecCcccCCE
Confidence             688898876543    345678999999999999986         8999999999999999999999875 7899999


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 008496          495 YSLAFSPTGEYLASGSLDKSMHIWSLKEG  523 (563)
Q Consensus       495 ~~l~~spdg~~lasgs~dg~v~iw~~~~~  523 (563)
                      ++|+|||||++|||||.|++|+||++...
T Consensus       316 ~~v~fSpdg~~laS~S~D~tvrvw~ip~~  344 (365)
T 4h5i_A          316 TEVTISPDSTYVASVSAANTIHIIKLPLN  344 (365)
T ss_dssp             EEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred             EEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence            99999999999999999999999999643

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=4.9e-37  Score=304.92  Aligned_cols=282  Identities=14%  Similarity=0.121  Sum_probs=244.0

Q ss_pred             EecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCC-E
Q 008496          210 ILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT-L  288 (563)
Q Consensus       210 ~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~-~  288 (563)
                      +..+|.+.|++++|+|++.+|++|+.|+.|++|++..+...          .......    .+...|++++|+|+++ +
T Consensus         6 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~----------~~~~~~~----~~~~~v~~~~~~~~~~~~   71 (342)
T 1yfq_A            6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKN----------VDLLQSL----RYKHPLLCCNFIDNTDLQ   71 (342)
T ss_dssp             CSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTE----------EEEEEEE----ECSSCEEEEEEEESSSEE
T ss_pred             cccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCcc----------ccceeee----ecCCceEEEEECCCCCcE
Confidence            44689999999999999999999999999999998754310          0111111    3457899999999999 9


Q ss_pred             EEEEeCCCeEEEEEc-CCceeEeecc--CCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCC---------CceeEEeeec
Q 008496          289 LATGSYDGQARIWST-NGDLKCTLSK--HKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKT---------EEWKQQFEFH  356 (563)
Q Consensus       289 l~sg~~dg~i~vw~~-~~~~~~~~~~--h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~---------~~~~~~~~~~  356 (563)
                      |++|+.||.|++|+. .......+.+  |..+|.+++|+| +.+|++++.|+.|++||+++         ++....+. +
T Consensus        72 l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~  149 (342)
T 1yfq_A           72 IYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-V  149 (342)
T ss_dssp             EEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-S
T ss_pred             EEEEcCCCeEEEEEeccCCceEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-e
Confidence            999999999999999 8777788888  999999999999 99999999999999999987         66565555 7


Q ss_pred             ccCeEEEecCCCceEEEEeCCCeEEEEEcCC-Cc--ceeeecCCCcceeEEEECC-CCCEEEEEeCCCcEEEEeCCCC--
Q 008496          357 SGPTLDVDWRNNVSFATSSTDNMIYVCKIGE-NR--PIKTFAGHQGEVNCVKWDP-TGSLLASCSDDVTAKIWNMKQD--  430 (563)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~-~~--~~~~~~~h~~~i~~~~~~~-~~~~las~s~dg~i~iwd~~~~--  430 (563)
                      ...+.++.|.++. +++++.++.|++|++.. ..  .......|...|.+++|+| ++++|++++.||.|++|+++..  
T Consensus       150 ~~~v~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~  228 (342)
T 1yfq_A          150 KNKIFTMDTNSSR-LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGD  228 (342)
T ss_dssp             CCCEEEEEECSSE-EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCC
T ss_pred             CCceEEEEecCCc-EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCc
Confidence            7788999998777 99999999999999987 43  3345567888999999999 9999999999999999999876  


Q ss_pred             ----ceeeeecccCC---------CEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCC-CCCEEE
Q 008496          431 ----KYVHDLREHSK---------EIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGH-REPVYS  496 (563)
Q Consensus       431 ----~~~~~~~~~~~---------~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h-~~~i~~  496 (563)
                          .....+..|..         .|.+++|+|++.         +|++++.||.|++||+.+++++..+.+| ..+|++
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~---------~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~  299 (342)
T 1yfq_A          229 DYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHK---------FLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVK  299 (342)
T ss_dssp             STTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTC---------CEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEE
T ss_pred             ccccccceeeecccccccccccceeEEEEEEcCCCC---------EEEEecCCceEEEEcCccHhHhhhhhcccCCCceE
Confidence                67777877765         999999999875         6899999999999999999999999998 999999


Q ss_pred             EEEcCCCCEEEEEeCCCc-EEEEe
Q 008496          497 LAFSPTGEYLASGSLDKS-MHIWS  519 (563)
Q Consensus       497 l~~spdg~~lasgs~dg~-v~iw~  519 (563)
                      ++  |+|++|++|+.||. .+.|.
T Consensus       300 ~~--~~~~~l~s~s~Dg~~~~~~~  321 (342)
T 1yfq_A          300 IA--CSDNILCLATSDDTFKTNAA  321 (342)
T ss_dssp             EE--ECSSEEEEEEECTHHHHCSS
T ss_pred             ec--CCCCeEEEEecCCccccccc
Confidence            99  99999999999998 55555

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=1.1e-36  Score=338.37  Aligned_cols=324  Identities=20%  Similarity=0.283  Sum_probs=271.7

Q ss_pred             ceeEecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCC
Q 008496          207 DVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG  286 (563)
Q Consensus       207 ~~~~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g  286 (563)
                      .+..+.+|...|.+++|+|++++|++|+.||.|++|++.++..             ....    ..+...|++++|+|++
T Consensus        47 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~-------------~~~~----~~~~~~v~~~~~s~~~  109 (814)
T 3mkq_A           47 EVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEK-------------VVDF----EAHPDYIRSIAVHPTK  109 (814)
T ss_dssp             EEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCE-------------EEEE----ECCSSCEEEEEECSSS
T ss_pred             eEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcE-------------EEEE----ecCCCCEEEEEEeCCC
Confidence            3567789999999999999999999999999999999876532             1111    2345789999999999


Q ss_pred             CEEEEEeCCCeEEEEEcCC--ceeEeeccCCCCEEEEEeCC-CCCEEEEeeCCCcEEEEECCCCceeEEeeecc-cCeEE
Q 008496          287 TLLATGSYDGQARIWSTNG--DLKCTLSKHKGPIFSLKWNK-KGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHS-GPTLD  362 (563)
Q Consensus       287 ~~l~sg~~dg~i~vw~~~~--~~~~~~~~h~~~V~~l~~~~-~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~-~~~~~  362 (563)
                      .+|++|+.||.|++|+...  .....+.+|..+|.+++|+| ++..|++++.|++|++||+.++.....+..+. ..+..
T Consensus       110 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~  189 (814)
T 3mkq_A          110 PYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNY  189 (814)
T ss_dssp             SEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCE
T ss_pred             CEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEE
Confidence            9999999999999999764  45667889999999999999 88999999999999999998887777666554 67778


Q ss_pred             EecC---CCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeccc
Q 008496          363 VDWR---NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREH  439 (563)
Q Consensus       363 ~~~~---~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~  439 (563)
                      +.|.   +...+++++.|+.|++|++....++..+.+|.+.|.+++|+|++++|++|+.||.|++||+.+++.+..+..|
T Consensus       190 ~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~  269 (814)
T 3mkq_A          190 VDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVG  269 (814)
T ss_dssp             EEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCS
T ss_pred             EEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecC
Confidence            8886   4567889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC----------eEEEE-----------------------
Q 008496          440 SKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG----------KLLYS-----------------------  486 (563)
Q Consensus       440 ~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~----------~~~~~-----------------------  486 (563)
                      ...+.+++|+|++..       .+++++ .|+.+.+|++..+          +.+..                       
T Consensus       270 ~~~v~~~~~~~~~~~-------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (814)
T 3mkq_A          270 LERSWCIATHPTGRK-------NYIASG-FDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQ  341 (814)
T ss_dssp             SSSEEEEEECTTCGG-------GEEEEE-ETTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCS
T ss_pred             CCcEEEEEEccCCCc-------eEEEEE-eCCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeeccccccccc
Confidence            999999999998741       235554 4677888887542          22221                       


Q ss_pred             ----------ecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEecCCCEEEEEEcCCCCEEEEEECCCeE
Q 008496          487 ----------LNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTV  556 (563)
Q Consensus       487 ----------~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~~~~i~~l~w~~~g~~la~~~~~~~v  556 (563)
                                +..+...+.+++|+|+|++|++++ |+.+.+|++.......    .+.+.+++|+|+|+.||++..++.+
T Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~~~~~~~~----~~~i~~~~~spdg~~la~~~~~g~v  416 (814)
T 3mkq_A          342 DEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTALAWRNKA----FGKCQDFVWGPDSNSYALIDETGQI  416 (814)
T ss_dssp             SSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE-TTEEEEEETTTTEEEE----EEECSEEEECTTSSCEEEECTTCCE
T ss_pred             CccceeeeecCCCCccCCceeEECCCCCEEEEec-CCEEEEEECccccccC----CCceEEEEEeCCCCeEEEEeCCCcE
Confidence                      123445678999999999999998 8999999987655433    2346789999999999999999999


Q ss_pred             EEEE
Q 008496          557 CVLD  560 (563)
Q Consensus       557 ~v~~  560 (563)
                      .+|+
T Consensus       417 ~l~~  420 (814)
T 3mkq_A          417 KYYK  420 (814)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9885

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.2e-36  Score=309.64  Aligned_cols=275  Identities=19%  Similarity=0.390  Sum_probs=243.2

Q ss_pred             CeEEEEECCCCCEEEEEeCCCeEEEEEcCC-ceeEeecc-CCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEe
Q 008496          276 DVTTLDWNGEGTLLATGSYDGQARIWSTNG-DLKCTLSK-HKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQF  353 (563)
Q Consensus       276 ~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~-~~~~~~~~-h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~  353 (563)
                      .+.+++|++  ..+++++.||.|++|+... .....+.. |...|++++|+|++++|++|+.||.|++||+.+++....+
T Consensus        95 ~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  172 (401)
T 4aez_A           95 YLNLLDWSN--LNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTM  172 (401)
T ss_dssp             TCBCEEECT--TSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred             eEEEEeecC--CCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEe
Confidence            466788886  4477888999999999864 44444443 8999999999999999999999999999999999999999


Q ss_pred             eecccCeEEEecCCCceEEEEeCCCeEEEEEcC-CCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCce
Q 008496          354 EFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIG-ENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKY  432 (563)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~-~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~  432 (563)
                      ..|...+.++.| +...+++++.|+.|++|++. ....+..+.+|.+.|.+++|+|++++|++|+.|+.|++||++++..
T Consensus       173 ~~~~~~v~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~  251 (401)
T 4aez_A          173 AGHQARVGCLSW-NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIP  251 (401)
T ss_dssp             CCCSSCEEEEEE-ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSE
T ss_pred             cCCCCceEEEEE-CCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCc
Confidence            999999999999 45688999999999999998 5667888999999999999999999999999999999999999999


Q ss_pred             eeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEe--CCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEE-
Q 008496          433 VHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASAS--FDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASG-  509 (563)
Q Consensus       433 ~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s--~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasg-  509 (563)
                      +..+..|...|.+++|+|++.        .++++|+  .|+.|++||+.+++++..+. +...|.+++|+|++++|+++ 
T Consensus       252 ~~~~~~~~~~v~~~~~~p~~~--------~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~  322 (401)
T 4aez_A          252 KFTKTNHNAAVKAVAWCPWQS--------NLLATGGGTMDKQIHFWNAATGARVNTVD-AGSQVTSLIWSPHSKEIMSTH  322 (401)
T ss_dssp             EEEECCCSSCCCEEEECTTST--------TEEEEECCTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEE
T ss_pred             cEEecCCcceEEEEEECCCCC--------CEEEEecCCCCCEEEEEECCCCCEEEEEe-CCCcEEEEEECCCCCeEEEEe
Confidence            999999999999999999764        2677766  89999999999999988886 56789999999999999995 


Q ss_pred             -eCCCcEEEEecCCCeeEEEE--e-cCCCEEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496          510 -SLDKSMHIWSLKEGKIVKTY--T-GNGGIFEVCWNKEGDKIAACFANHTVCVLDFR  562 (563)
Q Consensus       510 -s~dg~v~iw~~~~~~~~~~~--~-~~~~i~~l~w~~~g~~la~~~~~~~v~v~~~~  562 (563)
                       +.||.|+||++.+++.....  . ....|.+++|+|+|++|++++.||.|.|||+.
T Consensus       323 g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~  379 (401)
T 4aez_A          323 GFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVY  379 (401)
T ss_dssp             CTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECC
T ss_pred             ecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECC
Confidence             48999999999998766553  3 34579999999999999999999999999985

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=6.7e-37  Score=303.74  Aligned_cols=303  Identities=19%  Similarity=0.302  Sum_probs=222.9

Q ss_pred             eEecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECC--CC
Q 008496          209 TILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG--EG  286 (563)
Q Consensus       209 ~~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~--~g  286 (563)
                      .++.+|...|++++|+|++++||+|+.||.|++|++.++...         ......+    ..+...|++++|+|  ++
T Consensus         5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~---------~~~~~~~----~~~~~~v~~~~~~~~~d~   71 (351)
T 3f3f_A            5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSN---------WELSDSW----RAHDSSIVAIDWASPEYG   71 (351)
T ss_dssp             CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCC---------EEEEEEE----ECCSSCEEEEEECCGGGC
T ss_pred             ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCc---------ceeccee----ccCCCcEEEEEEcCCCCC
Confidence            567899999999999999999999999999999998754211         0111112    23567899999999  69


Q ss_pred             CEEEEEeCCCeEEEEEcCC----------ceeEeeccCCCCEEEEEeCCC--CCEEEEeeCCCcEEEEECCCCceeEEee
Q 008496          287 TLLATGSYDGQARIWSTNG----------DLKCTLSKHKGPIFSLKWNKK--GDYLLTGSCDKTAIVWDVKTEEWKQQFE  354 (563)
Q Consensus       287 ~~l~sg~~dg~i~vw~~~~----------~~~~~~~~h~~~V~~l~~~~~--~~~l~s~s~D~~v~iwd~~~~~~~~~~~  354 (563)
                      .+|++|+.||.|++|+...          .....+..|..+|.+++|+|+  +.+|++++.|++|++||+++++....+.
T Consensus        72 ~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~  151 (351)
T 3f3f_A           72 RIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWT  151 (351)
T ss_dssp             SEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCE
T ss_pred             CEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccc
Confidence            9999999999999999865          346678899999999999999  9999999999999999998876554433


Q ss_pred             -------------ecccCeEEEecCC----CceEEEEeCCCeEEEEEcCCCcc--eeeecCCCcceeEEEECCCC----C
Q 008496          355 -------------FHSGPTLDVDWRN----NVSFATSSTDNMIYVCKIGENRP--IKTFAGHQGEVNCVKWDPTG----S  411 (563)
Q Consensus       355 -------------~~~~~~~~~~~~~----~~~~~~~~~d~~i~~~~~~~~~~--~~~~~~h~~~i~~~~~~~~~----~  411 (563)
                                   .+...+.++.|.+    ...+++++.++.+.+|.......  +..+.+|...|++++|+|++    +
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~  231 (351)
T 3f3f_A          152 LTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQ  231 (351)
T ss_dssp             EEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSE
T ss_pred             ccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcce
Confidence                         3445677788865    56788999999998777766654  77888999999999999998    8


Q ss_pred             EEEEEeCCCcEEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCC
Q 008496          412 LLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHR  491 (563)
Q Consensus       412 ~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~  491 (563)
                      +|++|+.||.|++||++.+........+........+.+......     .....+.....+.+|+....+.+..+.+|.
T Consensus       232 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  306 (351)
T 3f3f_A          232 LIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDA-----QGRSDSNTEEKAELQSNLQVELLSEHDDHN  306 (351)
T ss_dssp             EEEEEETTSCEEEEEEEECC--------------------------------------------CCSEEEEEEEEECTTS
T ss_pred             EEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCccccccc-----ccccccccceeeeecccccccEEEEEeccc
Confidence            999999999999999987654433332222222222222211000     012233445667778777788889999999


Q ss_pred             CCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEE
Q 008496          492 EPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTY  529 (563)
Q Consensus       492 ~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~  529 (563)
                      .+|++++|+|+|++|++|+.||.|+||++.+++.+..+
T Consensus       307 ~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~  344 (351)
T 3f3f_A          307 GEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCM  344 (351)
T ss_dssp             SCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEEE
T ss_pred             ccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchhhe
Confidence            99999999999999999999999999999988655443

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.1e-38  Score=319.80  Aligned_cols=279  Identities=19%  Similarity=0.359  Sum_probs=245.0

Q ss_pred             CeEEEEECCCCC-EEEEE----------eCCCeEEEEEcCCce---eEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEE
Q 008496          276 DVTTLDWNGEGT-LLATG----------SYDGQARIWSTNGDL---KCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIV  341 (563)
Q Consensus       276 ~V~~l~~s~~g~-~l~sg----------~~dg~i~vw~~~~~~---~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~i  341 (563)
                      .|.+++|+|+|+ +|++|          +.||.|++|+.....   ......|..+|++++|+|++.+|++|+.|+.|++
T Consensus        14 ~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~v   93 (416)
T 2pm9_A           14 RTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGSLEL   93 (416)
T ss_dssp             ESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESSSCEEE
T ss_pred             hcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccCCeEEE
Confidence            378899999997 99999          889999999987542   2223368999999999999999999999999999


Q ss_pred             EECCC----CceeEEeeecccCeEEEecCC--CceEEEEeCCCeEEEEEcCCCc------ce---eeecCCCcceeEEEE
Q 008496          342 WDVKT----EEWKQQFEFHSGPTLDVDWRN--NVSFATSSTDNMIYVCKIGENR------PI---KTFAGHQGEVNCVKW  406 (563)
Q Consensus       342 wd~~~----~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~i~~~~~~~~~------~~---~~~~~h~~~i~~~~~  406 (563)
                      ||+.+    ......+..|..++.++.|.+  ...+++++.|+.|++|++....      ..   ..+.+|...|.+++|
T Consensus        94 w~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  173 (416)
T 2pm9_A           94 YSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAW  173 (416)
T ss_dssp             ECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEE
T ss_pred             eecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEe
Confidence            99987    447777888999999999975  4678999999999999998765      22   234679999999999


Q ss_pred             CCC-CCEEEEEeCCCcEEEEeCCCCceeeeeccc------CCCEEEEEEccCCCCCCCCCCcEEEEEEeCCC---eEEEE
Q 008496          407 DPT-GSLLASCSDDVTAKIWNMKQDKYVHDLREH------SKEIYTIRWSPTGSGTNNPNQQLILASASFDS---TVKLW  476 (563)
Q Consensus       407 ~~~-~~~las~s~dg~i~iwd~~~~~~~~~~~~~------~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg---~i~iw  476 (563)
                      +|+ +.+|++++.|+.|++||+++++.+..+..|      ...|.+++|+|++.        .++++++.|+   .|++|
T Consensus       174 ~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--------~~l~~~~~d~~~~~i~~~  245 (416)
T 2pm9_A          174 NQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNS--------TRVATATGSDNDPSILIW  245 (416)
T ss_dssp             CSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCT--------TEEEEEECCSSSCCCCEE
T ss_pred             CCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCC--------CEEEEEECCCCCceEEEE
Confidence            999 789999999999999999999988888776      78899999999863        2789999999   99999


Q ss_pred             eCCCC-eEEEEec-CCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEecCCCeeEEEEec-CCCEEEEEEcCCC-CEEEEEE
Q 008496          477 DVELG-KLLYSLN-GHREPVYSLAFSP-TGEYLASGSLDKSMHIWSLKEGKIVKTYTG-NGGIFEVCWNKEG-DKIAACF  551 (563)
Q Consensus       477 d~~~~-~~~~~~~-~h~~~i~~l~~sp-dg~~lasgs~dg~v~iw~~~~~~~~~~~~~-~~~i~~l~w~~~g-~~la~~~  551 (563)
                      |++++ ..+..+. +|..+|++++|+| ++.+|++|+.||.|++||+.+++.+..+.. ...|.+++|+|+| ..|++++
T Consensus       246 d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~  325 (416)
T 2pm9_A          246 DLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACAS  325 (416)
T ss_dssp             ETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECC
T ss_pred             eCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEe
Confidence            99986 5667777 8999999999999 999999999999999999999999998876 4568999999999 8999999


Q ss_pred             CCCeEEEEEee
Q 008496          552 ANHTVCVLDFR  562 (563)
Q Consensus       552 ~~~~v~v~~~~  562 (563)
                      .|+.|.|||++
T Consensus       326 ~d~~i~iw~~~  336 (416)
T 2pm9_A          326 FDNKIEVQTLQ  336 (416)
T ss_dssp             SSSEEEEEESC
T ss_pred             cCCcEEEEEcc
Confidence            99999999985

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.8e-37  Score=316.94  Aligned_cols=289  Identities=18%  Similarity=0.229  Sum_probs=236.4

Q ss_pred             CceeEe-cCCCCceEEEEECC-CCCEEEEeeCCCcEEEEecCC---CCCcCCCCCCCceEEEEEeeecccccCCCCeEEE
Q 008496          206 SDVTIL-EGHTSEVCACAWSP-AGSLLASGSGDSTARIWTIAD---GTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTL  280 (563)
Q Consensus       206 ~~~~~l-~~h~~~V~~~~~sp-~~~~latgs~D~~i~iW~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l  280 (563)
                      ..+..+ .+|.+.|++++|+| ++.+||+|+.|++|+||++.+   +....     .  ....        .+...|+++
T Consensus        53 ~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~-----~--~~~~--------~h~~~v~~~  117 (437)
T 3gre_A           53 KLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYS-----S--SLTY--------DCSSTVTQI  117 (437)
T ss_dssp             CEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCS-----C--SEEE--------ECSSCEEEE
T ss_pred             eEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccc-----e--eeec--------cCCCCEEEE
Confidence            345566 89999999999999 999999999999999999865   21100     0  0111        245789999


Q ss_pred             EECCCCCEEEEEeCCCeEEEEEc----CCceeEeecc------------CCCCEEEEE--eCCCCCEEEEeeCCCcEEEE
Q 008496          281 DWNGEGTLLATGSYDGQARIWST----NGDLKCTLSK------------HKGPIFSLK--WNKKGDYLLTGSCDKTAIVW  342 (563)
Q Consensus       281 ~~s~~g~~l~sg~~dg~i~vw~~----~~~~~~~~~~------------h~~~V~~l~--~~~~~~~l~s~s~D~~v~iw  342 (563)
                      +|+|++.+|++|+.||.|++|+.    .+.....+..            +...+.++.  +++++.+|++|+.|++|++|
T Consensus       118 ~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw  197 (437)
T 3gre_A          118 TMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIF  197 (437)
T ss_dssp             EECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEE
T ss_pred             EEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEE
Confidence            99999999999999999999997    3433332221            456677776  66889999999999999999


Q ss_pred             ECCCCceeEEeee--cccCeEEEecCCC-ceEEEEeCCCeEEEEEcCCCcceeeec-CCCcceeEEEECC----CCCEEE
Q 008496          343 DVKTEEWKQQFEF--HSGPTLDVDWRNN-VSFATSSTDNMIYVCKIGENRPIKTFA-GHQGEVNCVKWDP----TGSLLA  414 (563)
Q Consensus       343 d~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~d~~i~~~~~~~~~~~~~~~-~h~~~i~~~~~~~----~~~~la  414 (563)
                      |+++++....+..  |...+.++.|.++ ..+++++.|+.|++|++....++..+. +|...|.+++|+|    ++.+|+
T Consensus       198 d~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~  277 (437)
T 3gre_A          198 DIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVV  277 (437)
T ss_dssp             ETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEE
T ss_pred             eCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEE
Confidence            9999999998887  7889999999754 567889999999999999999888886 7888999996664    678999


Q ss_pred             EEeCCCcEEEEeCCCCceeeeecccC--------------------------CCEEEEEEccCCCCCCCCCCcEEEEEEe
Q 008496          415 SCSDDVTAKIWNMKQDKYVHDLREHS--------------------------KEIYTIRWSPTGSGTNNPNQQLILASAS  468 (563)
Q Consensus       415 s~s~dg~i~iwd~~~~~~~~~~~~~~--------------------------~~i~~~~~~p~~~~~~~~~~~~~l~s~s  468 (563)
                      +|+.||.|++||+++++++..+..|.                          ..|++++|+ ++         .+|++|+
T Consensus       278 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~---------~~l~s~~  347 (437)
T 3gre_A          278 GGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-ND---------KILLTDE  347 (437)
T ss_dssp             EESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TT---------EEEEEEG
T ss_pred             EEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-Cc---------eEEEecC
Confidence            99999999999999998877776554                          345555655 22         3799999


Q ss_pred             CCCeEEEEeCCCCeEEEEecC-------------------------------------CCCCEEEEEEcCC--CCEEEEE
Q 008496          469 FDSTVKLWDVELGKLLYSLNG-------------------------------------HREPVYSLAFSPT--GEYLASG  509 (563)
Q Consensus       469 ~dg~i~iwd~~~~~~~~~~~~-------------------------------------h~~~i~~l~~spd--g~~lasg  509 (563)
                      .||.|++||+.+++++..+.+                                     |...|++++|+++  +.+|++|
T Consensus       348 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~  427 (437)
T 3gre_A          348 ATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVAC  427 (437)
T ss_dssp             GGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEE
T ss_pred             CCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEE
Confidence            999999999998876666554                                     8899999999998  7899999


Q ss_pred             eCCCcEEEEe
Q 008496          510 SLDKSMHIWS  519 (563)
Q Consensus       510 s~dg~v~iw~  519 (563)
                      +.||.|+||+
T Consensus       428 ~~dG~I~iw~  437 (437)
T 3gre_A          428 DNSGLIGIFQ  437 (437)
T ss_dssp             ETTSCEEEEC
T ss_pred             cCCceEEEeC
Confidence            9999999995

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=1.2e-35  Score=304.04  Aligned_cols=275  Identities=24%  Similarity=0.479  Sum_probs=239.6

Q ss_pred             CeEEEEECCCCCEEEEEeCCCeEEEEEcC-CceeEe--eccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEE
Q 008496          276 DVTTLDWNGEGTLLATGSYDGQARIWSTN-GDLKCT--LSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQ  352 (563)
Q Consensus       276 ~V~~l~~s~~g~~l~sg~~dg~i~vw~~~-~~~~~~--~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~  352 (563)
                      .+..|+||++ ++|++|. |++|+|||.. |.....  +.+|...|++|+|+|+|++|++|+.|++|++||+.+++.+..
T Consensus       107 y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~  184 (420)
T 4gga_A          107 YLNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRN  184 (420)
T ss_dssp             TCBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE
T ss_pred             cceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEE
Confidence            4678999986 5777765 9999999976 444443  457888999999999999999999999999999999999999


Q ss_pred             eeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCC-cceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCc
Q 008496          353 FEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGEN-RPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDK  431 (563)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~-~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~  431 (563)
                      +..|...+.++.|. ...+++++.|+.+++|+.... ..+..+.+|...+.++.|+|+++++++++.|+.+++|+..++.
T Consensus       185 ~~~h~~~v~~~s~~-~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~  263 (420)
T 4gga_A          185 MTSHSARVGSLSWN-SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGE  263 (420)
T ss_dssp             ECCCSSCEEEEEEE-TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCS
T ss_pred             EeCCCCceEEEeeC-CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeecccc
Confidence            99999999998885 457889999999999998764 4567889999999999999999999999999999999998764


Q ss_pred             ----eeeeecccCCCEEEEEEccCCCCCCCCCCcEEEE--EEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCE
Q 008496          432 ----YVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILA--SASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEY  505 (563)
Q Consensus       432 ----~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~--s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~  505 (563)
                          .+.....|...|.+++|+|.+..        +++  +|+.|++|++||+.+++++..+..| ..+.++.|+|+++.
T Consensus       264 ~~~~~~~~~~~~~~~V~~~~~~p~~~~--------~la~~~gs~D~~I~iwd~~t~~~~~~~~~~-~~v~~~~~~~~~~~  334 (420)
T 4gga_A          264 GGWVPLQTFTQHQGAVKAVAWCPWQSN--------VLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKE  334 (420)
T ss_dssp             SCSCCSEEECCCSSCEEEEEECTTCTT--------EEEEEECTTTCEEEEEETTTTEEEEEEECS-SCEEEEEEETTTTE
T ss_pred             ccceeeeeecccCCceeeeeeCCCccc--------EEEEEeecCCCEEEEEeCCccccceeeccc-cceeeeeecCCCCe
Confidence                34566789999999999997642        444  4568999999999999999888865 57899999999999


Q ss_pred             EEEEe--CCCcEEEEecCCCeeEEEEecC-CCEEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496          506 LASGS--LDKSMHIWSLKEGKIVKTYTGN-GGIFEVCWNKEGDKIAACFANHTVCVLDFR  562 (563)
Q Consensus       506 lasgs--~dg~v~iw~~~~~~~~~~~~~~-~~i~~l~w~~~g~~la~~~~~~~v~v~~~~  562 (563)
                      |++++  .|+.|+|||+.+++++.++.++ +.|++++|+|||++||+|+.|++|+|||+.
T Consensus       335 lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~  394 (420)
T 4gga_A          335 LISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCF  394 (420)
T ss_dssp             EEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCS
T ss_pred             EEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECC
Confidence            98765  7899999999999999999874 579999999999999999999999999974

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=1.7e-36  Score=302.57  Aligned_cols=280  Identities=14%  Similarity=0.241  Sum_probs=235.4

Q ss_pred             CCCCeEEEEECCCCCEE-EEEeC---CCeEEEEEcCCce-e-EeeccCCCCEEEEEeCCC---CCEEEEeeCCCcEEEEE
Q 008496          273 KSKDVTTLDWNGEGTLL-ATGSY---DGQARIWSTNGDL-K-CTLSKHKGPIFSLKWNKK---GDYLLTGSCDKTAIVWD  343 (563)
Q Consensus       273 ~~~~V~~l~~s~~g~~l-~sg~~---dg~i~vw~~~~~~-~-~~~~~h~~~V~~l~~~~~---~~~l~s~s~D~~v~iwd  343 (563)
                      |...|++++|+|++..+ ++|+.   ||.|++|+..... . ....+|..+|.+++|+|+   +.+|++|+.|+.|++||
T Consensus        17 h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd   96 (357)
T 3i2n_A           17 FNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWN   96 (357)
T ss_dssp             CSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEEC
T ss_pred             CCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEe
Confidence            56789999999999655 56665   9999999987543 2 233479999999999998   69999999999999999


Q ss_pred             CCCCc-eeEEeeecccCeEEEecC-------CCceEEEEeCCCeEEEEEcCCCc-ceeeecCCCc----ceeEEE----E
Q 008496          344 VKTEE-WKQQFEFHSGPTLDVDWR-------NNVSFATSSTDNMIYVCKIGENR-PIKTFAGHQG----EVNCVK----W  406 (563)
Q Consensus       344 ~~~~~-~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~d~~i~~~~~~~~~-~~~~~~~h~~----~i~~~~----~  406 (563)
                      +.++. ....+..|...+.++.|.       +...+++++.|+.|++|++.... ++..+..|.+    .+.+++    |
T Consensus        97 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  176 (357)
T 3i2n_A           97 LEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAY  176 (357)
T ss_dssp             TTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCC
T ss_pred             CCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEecc
Confidence            99887 788888899999998663       34578999999999999998876 7788876655    788888    7


Q ss_pred             CCCCCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEEEEEcc---CCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeE
Q 008496          407 DPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSP---TGSGTNNPNQQLILASASFDSTVKLWDVELGKL  483 (563)
Q Consensus       407 ~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p---~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~  483 (563)
                      +|++++|++++.|+.|++||+++++... ...|...|.+++|+|   ++.         +|++++.||.|++||+++++.
T Consensus       177 ~~~~~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~---------~l~~~~~dg~i~i~d~~~~~~  246 (357)
T 3i2n_A          177 NQEERVVCAGYDNGDIKLFDLRNMALRW-ETNIKNGVCSLEFDRKDISMN---------KLVATSLEGKFHVFDMRTQHP  246 (357)
T ss_dssp             C-CCCEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEESCSSSSCC---------EEEEEESTTEEEEEEEEEEET
T ss_pred             CCCCCEEEEEccCCeEEEEECccCceee-ecCCCCceEEEEcCCCCCCCC---------EEEEECCCCeEEEEeCcCCCc
Confidence            8999999999999999999999988754 466889999999999   553         789999999999999987654


Q ss_pred             EEE-----ecCCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEecCCC-------------------eeEEEEec-CCCEEE
Q 008496          484 LYS-----LNGHREPVYSLAFSPTGE-YLASGSLDKSMHIWSLKEG-------------------KIVKTYTG-NGGIFE  537 (563)
Q Consensus       484 ~~~-----~~~h~~~i~~l~~spdg~-~lasgs~dg~v~iw~~~~~-------------------~~~~~~~~-~~~i~~  537 (563)
                      +..     +.+|..+|++++|+|+++ +|++|+.||.|++||+.++                   +.+..+.. ...|.+
T Consensus       247 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~  326 (357)
T 3i2n_A          247 TKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISS  326 (357)
T ss_dssp             TTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEE
T ss_pred             ccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeE
Confidence            333     348999999999999998 8999999999999999754                   34555554 457999


Q ss_pred             EEEcCCCCEEE-EEECCCeEEEEEee
Q 008496          538 VCWNKEGDKIA-ACFANHTVCVLDFR  562 (563)
Q Consensus       538 l~w~~~g~~la-~~~~~~~v~v~~~~  562 (563)
                      ++|+|+|+.|+ +|+.|+.|.|||+.
T Consensus       327 ~~~s~~~~~l~~s~~~d~~i~iw~~~  352 (357)
T 3i2n_A          327 LDWSPDKRGLCVCSSFDQTVRVLIVT  352 (357)
T ss_dssp             EEECSSSTTEEEEEETTSEEEEEEEC
T ss_pred             EEEcCCCCeEEEEecCCCcEEEEECC
Confidence            99999999998 78999999999986

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=3e-36  Score=301.88  Aligned_cols=292  Identities=18%  Similarity=0.306  Sum_probs=238.4

Q ss_pred             CCCceeEecCCCCceEEEEECCC---CCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEE
Q 008496          204 PNSDVTILEGHTSEVCACAWSPA---GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTL  280 (563)
Q Consensus       204 ~~~~~~~l~~h~~~V~~~~~sp~---~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l  280 (563)
                      |...+.++.+|...|++++|+|+   |++|++|+.||.|+||++.+...           ......    ..+...|+++
T Consensus        28 ~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~-----------~~~~~~----~~h~~~v~~~   92 (368)
T 3mmy_A           28 PMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQ-----------TIPKAQ----QMHTGPVLDV   92 (368)
T ss_dssp             TTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSC-----------EEEEEE----EECSSCEEEE
T ss_pred             CcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCc-----------eeEEEe----ccccCCEEEE
Confidence            44556788999999999999999   69999999999999999875211           011111    1346789999


Q ss_pred             EECCCCCEEEEEeCCCeEEEEEcCCceeEeeccCCCCEEEEEe--CCCCCEEEEeeCCCcEEEEECCCCceeEEeeeccc
Q 008496          281 DWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKW--NKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSG  358 (563)
Q Consensus       281 ~~s~~g~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~--~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~  358 (563)
                      +|+|++++|++|+.||.|++|+........+..|..+|.+++|  +|++.+|++++.|++|++||+++++....+..+. 
T Consensus        93 ~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-  171 (368)
T 3mmy_A           93 CWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE-  171 (368)
T ss_dssp             EECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS-
T ss_pred             EECcCCCEEEEEcCCCcEEEEEcCCCCceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC-
Confidence            9999999999999999999999987766677889999999999  9999999999999999999999998888777654 


Q ss_pred             CeEEEecCCCceEEEEeCCCeEEEEEcCCCcceee-e-cCCCcceeEEEECCCCCE----EEEEeCCCcEEEEeCCCC--
Q 008496          359 PTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKT-F-AGHQGEVNCVKWDPTGSL----LASCSDDVTAKIWNMKQD--  430 (563)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~-~-~~h~~~i~~~~~~~~~~~----las~s~dg~i~iwd~~~~--  430 (563)
                      .+..+.+... .+++++.++.+.+|++........ + ..+...+.++++.++...    +++|+.||.|++|+++..  
T Consensus       172 ~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~  250 (368)
T 3mmy_A          172 RCYCADVIYP-MAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNP  250 (368)
T ss_dssp             CEEEEEEETT-EEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCH
T ss_pred             CceEEEecCC-eeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCc
Confidence            4556666544 566777889999999976543222 2 123345566666555544    999999999999999887  


Q ss_pred             -ceeeeecccCC------------CEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEE
Q 008496          431 -KYVHDLREHSK------------EIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSL  497 (563)
Q Consensus       431 -~~~~~~~~~~~------------~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l  497 (563)
                       ..+..+..|..            .|.+++|+|++.         +|++|+.||.|++||+.+++++..+.+|..+|+++
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~---------~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~  321 (368)
T 3mmy_A          251 AKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHG---------TLATVGSDGRFSFWDKDARTKLKTSEQLDQPISAC  321 (368)
T ss_dssp             HHHSEEEECSEEC----CCCEEECCEEEEEECTTTC---------CEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEE
T ss_pred             cccceeeeeeecccccccccccccceEEEEEecCCC---------EEEEEccCCeEEEEECCCCcEEEEecCCCCCceEE
Confidence             45666777765            799999999875         68999999999999999999999999999999999


Q ss_pred             EEcCCCCEEEEEeCCCcEEEEecC
Q 008496          498 AFSPTGEYLASGSLDKSMHIWSLK  521 (563)
Q Consensus       498 ~~spdg~~lasgs~dg~v~iw~~~  521 (563)
                      +|+|+|++||+|+.|+..+.|++.
T Consensus       322 ~~s~~g~~l~~~s~d~~~~~~~~~  345 (368)
T 3mmy_A          322 CFNHNGNIFAYASSYDWSKGHEFY  345 (368)
T ss_dssp             EECTTSSCEEEEECCCSTTCGGGC
T ss_pred             EECCCCCeEEEEeccccccccccc
Confidence            999999999999999865555543

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=6.2e-36  Score=304.34  Aligned_cols=292  Identities=22%  Similarity=0.403  Sum_probs=240.0

Q ss_pred             eeEecCCCCce--EEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCC
Q 008496          208 VTILEGHTSEV--CACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE  285 (563)
Q Consensus       208 ~~~l~~h~~~V--~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~  285 (563)
                      +....+|...+  .+++|++  ..+++++.|+.|++|++.++...             ....   ..+...|++++|+|+
T Consensus        84 ~~~~~~~~~~~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~-------------~~~~---~~~~~~v~~v~~s~~  145 (401)
T 4aez_A           84 VLDAPGIIDDYYLNLLDWSN--LNVVAVALERNVYVWNADSGSVS-------------ALAE---TDESTYVASVKWSHD  145 (401)
T ss_dssp             EEECTTCCCCTTCBCEEECT--TSEEEEEETTEEEEEETTTCCEE-------------EEEE---CCTTCCEEEEEECTT
T ss_pred             eeeCCCCcCCceEEEEeecC--CCEEEEECCCeEEEeeCCCCcEe-------------Eeee---cCCCCCEEEEEECCC
Confidence            33445777664  4566664  56788899999999999765421             1111   124678999999999


Q ss_pred             CCEEEEEeCCCeEEEEEcC-CceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECC-CCceeEEeeecccCeEEE
Q 008496          286 GTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVK-TEEWKQQFEFHSGPTLDV  363 (563)
Q Consensus       286 g~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~-~~~~~~~~~~~~~~~~~~  363 (563)
                      |.+|++|+.||.|++|+.. +.....+.+|...|.+++|  ++++|++|+.|+.|++||++ .......+..|...+.++
T Consensus       146 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~  223 (401)
T 4aez_A          146 GSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGL  223 (401)
T ss_dssp             SSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEE
T ss_pred             CCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEE
Confidence            9999999999999999976 5667788899999999999  46799999999999999998 566677888899999999


Q ss_pred             ecCCC-ceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCC-CEEEEEe--CCCcEEEEeCCCCceeeeeccc
Q 008496          364 DWRNN-VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTG-SLLASCS--DDVTAKIWNMKQDKYVHDLREH  439 (563)
Q Consensus       364 ~~~~~-~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~-~~las~s--~dg~i~iwd~~~~~~~~~~~~~  439 (563)
                      .|..+ ..+++++.|+.|++|++....++..+.+|...|.+++|+|++ .++++|+  .|+.|++||+.+++.+..+. +
T Consensus       224 ~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~  302 (401)
T 4aez_A          224 AWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD-A  302 (401)
T ss_dssp             EECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE-C
T ss_pred             EEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe-C
Confidence            99754 578899999999999999999999999999999999999976 5666665  79999999999999888775 6


Q ss_pred             CCCEEEEEEccCCCCCCCCCCcEEEEE--EeCCCeEEEEeCCCCeEE--EEecCCCCCEEEEEEcCCCCEEEEEeCCCcE
Q 008496          440 SKEIYTIRWSPTGSGTNNPNQQLILAS--ASFDSTVKLWDVELGKLL--YSLNGHREPVYSLAFSPTGEYLASGSLDKSM  515 (563)
Q Consensus       440 ~~~i~~~~~~p~~~~~~~~~~~~~l~s--~s~dg~i~iwd~~~~~~~--~~~~~h~~~i~~l~~spdg~~lasgs~dg~v  515 (563)
                      ...|.+++|+|++.         ++++  |+.||.|++||+.+++..  ..+.+|..+|.+++|+|+|++|++|+.||.|
T Consensus       303 ~~~v~~~~~s~~~~---------~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i  373 (401)
T 4aez_A          303 GSQVTSLIWSPHSK---------EIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENL  373 (401)
T ss_dssp             SSCEEEEEECSSSS---------EEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEE
T ss_pred             CCcEEEEEECCCCC---------eEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcE
Confidence            67899999999875         5555  458999999999986654  4577899999999999999999999999999


Q ss_pred             EEEecCCCeeEEEE
Q 008496          516 HIWSLKEGKIVKTY  529 (563)
Q Consensus       516 ~iw~~~~~~~~~~~  529 (563)
                      ++|++.+++.+...
T Consensus       374 ~iw~~~~~~~~~~~  387 (401)
T 4aez_A          374 KFWRVYDGDHVKRP  387 (401)
T ss_dssp             EEEECCC-------
T ss_pred             EEEECCCCcccccc
Confidence            99999998876553

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.9e-36  Score=308.15  Aligned_cols=277  Identities=21%  Similarity=0.363  Sum_probs=245.8

Q ss_pred             CCCeEEEEECCCCC-EEEEEeCCCeEEEEEc----CCce-------eEeecc----------CCCCEEEEEeCCCCCEEE
Q 008496          274 SKDVTTLDWNGEGT-LLATGSYDGQARIWST----NGDL-------KCTLSK----------HKGPIFSLKWNKKGDYLL  331 (563)
Q Consensus       274 ~~~V~~l~~s~~g~-~l~sg~~dg~i~vw~~----~~~~-------~~~~~~----------h~~~V~~l~~~~~~~~l~  331 (563)
                      ...|++++|+|+|+ +|++|+.||.|++|+.    ....       ...+..          |.++|++++|+|++++|+
T Consensus        45 ~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  124 (425)
T 1r5m_A           45 LDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIV  124 (425)
T ss_dssp             CSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEEE
T ss_pred             cCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCEEE
Confidence            46799999999999 9999999999999998    5332       333333          688999999999999999


Q ss_pred             EeeCCCcEEEEECCCCceeEEeeecccCeEEEecCCC-ceEEEEeCCCeEEEEEcCCCcceeeecCCCcc----------
Q 008496          332 TGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNN-VSFATSSTDNMIYVCKIGENRPIKTFAGHQGE----------  400 (563)
Q Consensus       332 s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~----------  400 (563)
                      +|+.|+.|++|| .++.....+..|..++.++.|.++ ..+++++.|+.|++|++...+.+..+..+...          
T Consensus       125 ~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (425)
T 1r5m_A          125 TGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHS  203 (425)
T ss_dssp             EEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC-------------
T ss_pred             EEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeecccc
Confidence            999999999999 677788888889999999999754 56888999999999999999988888888776          


Q ss_pred             -----eeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEE
Q 008496          401 -----VNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKL  475 (563)
Q Consensus       401 -----i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~i  475 (563)
                           +.+++|+|++ .+++++.|+.|++||+.++..+..+..|...|.+++|+|++.         +|++++.||.|++
T Consensus       204 ~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~---------~l~~~~~d~~i~i  273 (425)
T 1r5m_A          204 GDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNK---------LLLSASDDGTLRI  273 (425)
T ss_dssp             --CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTT---------EEEEEETTSCEEE
T ss_pred             CCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCC---------EEEEEcCCCEEEE
Confidence                 9999999875 578899999999999999998888999999999999999875         7899999999999


Q ss_pred             EeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEec-CCCEEEEEEcCCCCEEEEEECCC
Q 008496          476 WDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTG-NGGIFEVCWNKEGDKIAACFANH  554 (563)
Q Consensus       476 wd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~-~~~i~~l~w~~~g~~la~~~~~~  554 (563)
                      ||+++++.+..+.+|..+|.+++|+|++ +|++++.|+.|++||+.+++.+..+.. ...|..++|+|+|+.||+++.|+
T Consensus       274 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg  352 (425)
T 1r5m_A          274 WHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDG  352 (425)
T ss_dssp             ECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTS
T ss_pred             EECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCC
Confidence            9999999989999999999999999999 999999999999999999999888876 56799999999999999999999


Q ss_pred             eEEEEEee
Q 008496          555 TVCVLDFR  562 (563)
Q Consensus       555 ~v~v~~~~  562 (563)
                      .|.|||++
T Consensus       353 ~i~i~~~~  360 (425)
T 1r5m_A          353 QVNVYDLK  360 (425)
T ss_dssp             CEEEEECH
T ss_pred             eEEEEECC
Confidence            99999985

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=5.6e-36  Score=303.71  Aligned_cols=249  Identities=26%  Similarity=0.424  Sum_probs=207.3

Q ss_pred             CCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEEe
Q 008496          214 HTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGS  293 (563)
Q Consensus       214 h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~  293 (563)
                      +...|.+++|+|++++||+|+.|++|+|||+.++..             ...+    ..|...|++++|+|++.+|++|+
T Consensus       122 ~~~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~-------------~~~~----~~h~~~v~~~~~~p~~~~l~s~s  184 (393)
T 1erj_A          122 SDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKI-------------VMIL----QGHEQDIYSLDYFPSGDKLVSGS  184 (393)
T ss_dssp             CCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEE-------------EEEE----CCCSSCEEEEEECTTSSEEEEEE
T ss_pred             CceeEEEEEECCCCCEEEEEcCCCeEEEEECCCCcE-------------EEEE----ccCCCCEEEEEEcCCCCEEEEec
Confidence            344599999999999999999999999999875431             1112    23567899999999999999999


Q ss_pred             CCCeEEEEEcCCceeEeeccCCCCEEEEEeCC-CCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecCCCceEE
Q 008496          294 YDGQARIWSTNGDLKCTLSKHKGPIFSLKWNK-KGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFA  372 (563)
Q Consensus       294 ~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  372 (563)
                      .|+.|++||...........+...|.+++|+| ++.+|++|+.|++|++||++++.....+..                 
T Consensus       185 ~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~-----------------  247 (393)
T 1erj_A          185 GDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDS-----------------  247 (393)
T ss_dssp             TTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------------------
T ss_pred             CCCcEEEEECCCCeeEEEEEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecc-----------------
Confidence            99999999986543333334677899999999 899999999999999999988765543321                 


Q ss_pred             EEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCC------------ceeeeecccC
Q 008496          373 TSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD------------KYVHDLREHS  440 (563)
Q Consensus       373 ~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~------------~~~~~~~~~~  440 (563)
                                       ......+|...|.+++|+|++++|++|+.|++|++||+.+.            .+...+.+|.
T Consensus       248 -----------------~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~  310 (393)
T 1erj_A          248 -----------------ENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHK  310 (393)
T ss_dssp             ----------------------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCS
T ss_pred             -----------------cccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEeccc
Confidence                             01123578999999999999999999999999999998753            3455677899


Q ss_pred             CCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcC------CCCEEEEEeCCCc
Q 008496          441 KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSP------TGEYLASGSLDKS  514 (563)
Q Consensus       441 ~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp------dg~~lasgs~dg~  514 (563)
                      ..|.+++|+|++.         +|++|+.|+.|++||+.+++++..+.+|...|.+++|+|      ++.+||+|+.||+
T Consensus       311 ~~v~~~~~~~~~~---------~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~  381 (393)
T 1erj_A          311 DFVLSVATTQNDE---------YILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCK  381 (393)
T ss_dssp             SCEEEEEECGGGC---------EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSE
T ss_pred             CcEEEEEECCCCC---------EEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCc
Confidence            9999999999875         799999999999999999999999999999999999986      6889999999999


Q ss_pred             EEEEecCC
Q 008496          515 MHIWSLKE  522 (563)
Q Consensus       515 v~iw~~~~  522 (563)
                      |+||++.+
T Consensus       382 i~iW~~~~  389 (393)
T 1erj_A          382 ARIWKYKK  389 (393)
T ss_dssp             EEEEEEEE
T ss_pred             EEECcccc
Confidence            99999864

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=5.4e-37  Score=301.60  Aligned_cols=252  Identities=25%  Similarity=0.420  Sum_probs=205.6

Q ss_pred             cCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCc---eeEeeccCCCCEEEEEeCC--CCCEEEEeeCCCcEEEEECCC
Q 008496          272 EKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGD---LKCTLSKHKGPIFSLKWNK--KGDYLLTGSCDKTAIVWDVKT  346 (563)
Q Consensus       272 ~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~---~~~~~~~h~~~V~~l~~~~--~~~~l~s~s~D~~v~iwd~~~  346 (563)
                      .|...|++++|+|+|++|++|+.|+.|+||+....   ....+.+|.++|++++|++  ++++|++|+.|++|++||+++
T Consensus        11 ~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~   90 (316)
T 3bg1_A           11 SHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREEN   90 (316)
T ss_dssp             ---CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSS
T ss_pred             cccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCC
Confidence            45678999999999999999999999999997542   3567889999999999986  489999999999999999876


Q ss_pred             CceeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCC--CCEEEEEeCCCcEEE
Q 008496          347 EEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT--GSLLASCSDDVTAKI  424 (563)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~--~~~las~s~dg~i~i  424 (563)
                      +.+.                                       ++..+.+|...|++++|+|+  +.+|++|+.|++|++
T Consensus        91 ~~~~---------------------------------------~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~l  131 (316)
T 3bg1_A           91 GTWE---------------------------------------KSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISL  131 (316)
T ss_dssp             SCCC---------------------------------------EEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEE
T ss_pred             Ccce---------------------------------------EEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEE
Confidence            5321                                       12346689999999999998  789999999999999


Q ss_pred             EeCCCCce---eeeecccCCCEEEEEEccCCCCC--------CCCCCcEEEEEEeCCCeEEEEeCCCC---eEEEEecCC
Q 008496          425 WNMKQDKY---VHDLREHSKEIYTIRWSPTGSGT--------NNPNQQLILASASFDSTVKLWDVELG---KLLYSLNGH  490 (563)
Q Consensus       425 wd~~~~~~---~~~~~~~~~~i~~~~~~p~~~~~--------~~~~~~~~l~s~s~dg~i~iwd~~~~---~~~~~~~~h  490 (563)
                      ||++....   ...+..|...+.++.|+|+....        ..+....+|++|+.|++|+|||++.+   +++..+.+|
T Consensus       132 wd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h  211 (316)
T 3bg1_A          132 LTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAH  211 (316)
T ss_dssp             EEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCC
T ss_pred             EecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccC
Confidence            99987532   34567899999999999974210        00111236899999999999999755   567788999


Q ss_pred             CCCEEEEEEcCCC----CEEEEEeCCCcEEEEecCCC---e-eEEEE-ecCCCEEEEEEcCCCCEEEEEECCCeEEEEEe
Q 008496          491 REPVYSLAFSPTG----EYLASGSLDKSMHIWSLKEG---K-IVKTY-TGNGGIFEVCWNKEGDKIAACFANHTVCVLDF  561 (563)
Q Consensus       491 ~~~i~~l~~spdg----~~lasgs~dg~v~iw~~~~~---~-~~~~~-~~~~~i~~l~w~~~g~~la~~~~~~~v~v~~~  561 (563)
                      ..+|.+++|+|++    .+||+|+.|++|+||++.+.   . ....+ .....|++++|+|+|+.||+|+.|+.|.||+.
T Consensus       212 ~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~  291 (316)
T 3bg1_A          212 SDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKE  291 (316)
T ss_dssp             SSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEE
T ss_pred             CCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEE
Confidence            9999999999997    89999999999999998762   1 11112 23567999999999999999999999999986


Q ss_pred             e
Q 008496          562 R  562 (563)
Q Consensus       562 ~  562 (563)
                      .
T Consensus       292 ~  292 (316)
T 3bg1_A          292 S  292 (316)
T ss_dssp             C
T ss_pred             C
Confidence            4

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=9.8e-37  Score=313.69  Aligned_cols=279  Identities=18%  Similarity=0.259  Sum_probs=225.6

Q ss_pred             CCCCeEEEEECC-CCCEEEEEeCCCeEEEEEcCCc---eeEeeccCCCCEEEEEeCC-CCCEEEEeeCCCcEEEEECCCC
Q 008496          273 KSKDVTTLDWNG-EGTLLATGSYDGQARIWSTNGD---LKCTLSKHKGPIFSLKWNK-KGDYLLTGSCDKTAIVWDVKTE  347 (563)
Q Consensus       273 ~~~~V~~l~~s~-~g~~l~sg~~dg~i~vw~~~~~---~~~~~~~h~~~V~~l~~~~-~~~~l~s~s~D~~v~iwd~~~~  347 (563)
                      +...|++|+|+| ++++||+|+.||.|+|||....   ....+.+|.++|++|+|+| ++++|++|+.|++|++||++++
T Consensus       118 ~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~  197 (435)
T 4e54_B          118 FDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGN  197 (435)
T ss_dssp             CSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSC
T ss_pred             CCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCC
Confidence            356799999999 5789999999999999997532   3345678999999999998 6889999999999999999876


Q ss_pred             ceeEEeeecc--cCeEEEecCC-CceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCC-EEEEEeCCCcEE
Q 008496          348 EWKQQFEFHS--GPTLDVDWRN-NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGS-LLASCSDDVTAK  423 (563)
Q Consensus       348 ~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~-~las~s~dg~i~  423 (563)
                      ........+.  ..+.++.|.. ...+++++.|+.|++|++.. +.+..+.+|...|++++|+|++. +|++|+.|++|+
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~-~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~  276 (435)
T 4e54_B          198 ILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG-KELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVK  276 (435)
T ss_dssp             EEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS-CBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCC
T ss_pred             ceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc-ceeEEEecccceEEeeeecCCCceEEEEecCcceee
Confidence            5443333322  2345666654 45788899999999999864 56778899999999999999986 788999999999


Q ss_pred             EEeCCCCceeee---ecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCC------CE
Q 008496          424 IWNMKQDKYVHD---LREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHRE------PV  494 (563)
Q Consensus       424 iwd~~~~~~~~~---~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~------~i  494 (563)
                      |||+++.+....   ...|...|++++|+|++.         +|++++.||+|+|||+.++.+...+..|..      .+
T Consensus       277 iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~---------~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  347 (435)
T 4e54_B          277 IWDLRQVRGKASFLYSLPHRHPVNAACFSPDGA---------RLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTP  347 (435)
T ss_dssp             EEETTTCCSSSCCSBCCBCSSCEEECCBCTTSS---------EEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCC
T ss_pred             EEecccccccceEEEeeeccccccceeECCCCC---------eeEEEcCCCEEEEEECCCCccceEEeccccccccccee
Confidence            999987664433   357899999999999875         799999999999999999888877766542      23


Q ss_pred             EEEEEcCCCCEEEEEeC------------CCcEEEEecCCCeeEEEEec--CCCEEEE-EEcCCCCEEEEEECCCeEEEE
Q 008496          495 YSLAFSPTGEYLASGSL------------DKSMHIWSLKEGKIVKTYTG--NGGIFEV-CWNKEGDKIAACFANHTVCVL  559 (563)
Q Consensus       495 ~~l~~spdg~~lasgs~------------dg~v~iw~~~~~~~~~~~~~--~~~i~~l-~w~~~g~~la~~~~~~~v~v~  559 (563)
                      ..+.|+|++.++++++.            ++.|++||..+++++..+..  ...|.++ +|+|+|++||+|+ |+.|.||
T Consensus       348 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW  426 (435)
T 4e54_B          348 IKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILIW  426 (435)
T ss_dssp             CBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEEC
T ss_pred             EEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEE
Confidence            45677888777776643            35799999999999887643  3457776 6999999999885 7799999


Q ss_pred             Eee
Q 008496          560 DFR  562 (563)
Q Consensus       560 ~~~  562 (563)
                      |++
T Consensus       427 ~~~  429 (435)
T 4e54_B          427 SQQ  429 (435)
T ss_dssp             CCC
T ss_pred             ECC
Confidence            975

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=5.7e-35  Score=299.09  Aligned_cols=284  Identities=25%  Similarity=0.470  Sum_probs=232.8

Q ss_pred             eEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEEeCCCe
Q 008496          218 VCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQ  297 (563)
Q Consensus       218 V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~dg~  297 (563)
                      .+.++||++ ++||+| .|++|+|||+.++...             ..+.  ...+...|++|+|+|+|++|++|+.||.
T Consensus       108 ~~~l~wS~~-n~lAvg-ld~tV~lWd~~tg~~~-------------~~~~--~~~~~~~V~sv~fspdg~~lasgs~Dg~  170 (420)
T 4gga_A          108 LNLVDWSSG-NVLAVA-LDNSVYLWSASSGDIL-------------QLLQ--MEQPGEYISSVAWIKEGNYLAVGTSSAE  170 (420)
T ss_dssp             CBCEEECTT-SEEEEE-ETTEEEEEETTTCCEE-------------EEEE--CCSTTCCEEEEEECTTSSEEEEEETTSC
T ss_pred             ceeEEECCC-CEEEEE-eCCEEEEEECCCCCEE-------------EEEE--ecCCCCcEEEEEECCCCCEEEEEECCCe
Confidence            578999975 577776 5999999999876421             1111  1234567999999999999999999999


Q ss_pred             EEEEEcC-CceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCC-ceeEEeeecccCeEEEecCC-CceEEEE
Q 008496          298 ARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTE-EWKQQFEFHSGPTLDVDWRN-NVSFATS  374 (563)
Q Consensus       298 i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~  374 (563)
                      |+||+.. +.....+.+|...|.++.|+  +..|++|+.|+.+++||.... .....+..|...+..+.|.. ...++++
T Consensus       171 v~iWd~~~~~~~~~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~  248 (420)
T 4gga_A          171 VQLWDVQQQKRLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASG  248 (420)
T ss_dssp             EEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred             EEEEEcCCCcEEEEEeCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeee
Confidence            9999976 56677889999999998875  579999999999999998764 44567788888888888865 4577899


Q ss_pred             eCCCeEEEEEcCCCc----ceeeecCCCcceeEEEECCCCC-EEEE--EeCCCcEEEEeCCCCceeeeecccCCCEEEEE
Q 008496          375 STDNMIYVCKIGENR----PIKTFAGHQGEVNCVKWDPTGS-LLAS--CSDDVTAKIWNMKQDKYVHDLREHSKEIYTIR  447 (563)
Q Consensus       375 ~~d~~i~~~~~~~~~----~~~~~~~h~~~i~~~~~~~~~~-~las--~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~  447 (563)
                      +.|+.+++|+.....    ++..+..|.+.|.+++|+|.+. ++++  |+.|++|++||+.++.+...+..| ..+.++.
T Consensus       249 ~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~-~~v~~~~  327 (420)
T 4gga_A          249 GNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSIL  327 (420)
T ss_dssp             ETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECS-SCEEEEE
T ss_pred             eccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccc-cceeeee
Confidence            999999999997654    4567788999999999999764 5554  457999999999999988877655 5688999


Q ss_pred             EccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEE
Q 008496          448 WSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVK  527 (563)
Q Consensus       448 ~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~  527 (563)
                      |+|++.       .++.++|+.|+.|+|||+.+++++.++.+|..+|++++|||||++|||||.|++|+|||+.+....+
T Consensus       328 ~~~~~~-------~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~~~  400 (420)
T 4gga_A          328 WSPHYK-------ELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPAR  400 (420)
T ss_dssp             EETTTT-------EEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSSCC-
T ss_pred             ecCCCC-------eEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCccc
Confidence            999875       1233334579999999999999999999999999999999999999999999999999997655443


Q ss_pred             E
Q 008496          528 T  528 (563)
Q Consensus       528 ~  528 (563)
                      .
T Consensus       401 ~  401 (420)
T 4gga_A          401 R  401 (420)
T ss_dssp             -
T ss_pred             h
Confidence            3

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=9.3e-36  Score=306.45  Aligned_cols=292  Identities=22%  Similarity=0.405  Sum_probs=237.3

Q ss_pred             ecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEE
Q 008496          211 LEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLA  290 (563)
Q Consensus       211 l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~  290 (563)
                      ..+|...|.+++|  ++++|++|+.||+|++||+.++..             ...+    ..+...|++++|  ++++|+
T Consensus       129 ~~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~-------------~~~~----~~h~~~v~~l~~--~~~~l~  187 (435)
T 1p22_A          129 RSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLEC-------------KRIL----TGHTGSVLCLQY--DERVII  187 (435)
T ss_dssp             CCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCE-------------EEEE----CCCSSCEEEEEC--CSSEEE
T ss_pred             ccCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeE-------------EEEE----cCCCCcEEEEEE--CCCEEE
Confidence            3467788998877  789999999999999999876432             1112    235678999999  788999


Q ss_pred             EEeCCCeEEEEEcC-CceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCcee---EEeeecccCeEEEecC
Q 008496          291 TGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWK---QQFEFHSGPTLDVDWR  366 (563)
Q Consensus       291 sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~---~~~~~~~~~~~~~~~~  366 (563)
                      +|+.||.|++|+.. +.....+.+|..+|.+++|++  .+|++|+.|++|++||+.++...   ..+..|...+..+.| 
T Consensus       188 sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~-  264 (435)
T 1p22_A          188 TGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF-  264 (435)
T ss_dssp             EEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE-
T ss_pred             EEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe-
Confidence            99999999999975 567778899999999999974  59999999999999999887655   566778888999998 


Q ss_pred             CCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEEE
Q 008496          367 NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTI  446 (563)
Q Consensus       367 ~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~  446 (563)
                      +...+++++.|+.|++|++.+..++..+.+|...|.+++|  ++++|++|+.||.|++||++++.++..+.+|...|.++
T Consensus       265 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~  342 (435)
T 1p22_A          265 DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCI  342 (435)
T ss_dssp             ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEE
T ss_pred             CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEE
Confidence            6678899999999999999999999999999999999999  47899999999999999999999999999999999999


Q ss_pred             EEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCe---------EEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEE
Q 008496          447 RWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK---------LLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHI  517 (563)
Q Consensus       447 ~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~---------~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~i  517 (563)
                      +|.  +.         +|++|+.||.|++||+..+.         ++..+.+|..+|++++|  ++.+|++|+.||.|++
T Consensus       343 ~~~--~~---------~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~i  409 (435)
T 1p22_A          343 RFD--NK---------RIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILI  409 (435)
T ss_dssp             ECC--SS---------EEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEE
T ss_pred             Eec--CC---------EEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEE
Confidence            983  22         79999999999999987665         88899999999999999  7889999999999999


Q ss_pred             EecCCCeeEEEEecCCCEEEEEEc
Q 008496          518 WSLKEGKIVKTYTGNGGIFEVCWN  541 (563)
Q Consensus       518 w~~~~~~~~~~~~~~~~i~~l~w~  541 (563)
                      ||+.+...............+.|.
T Consensus       410 wd~~~~~~~~~~~~~~~~~~~~~~  433 (435)
T 1p22_A          410 WDFLNDPAAQAEPPRSPSRTYTYI  433 (435)
T ss_dssp             EC----------------------
T ss_pred             EECCCCCCcccCCCCCCccceeee
Confidence            999887655444333344444443

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=4.7e-35  Score=303.71  Aligned_cols=269  Identities=28%  Similarity=0.437  Sum_probs=242.3

Q ss_pred             eEEEEECCCCCEEEEEeCCCeEEEEEcC-CceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeee
Q 008496          277 VTTLDWNGEGTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEF  355 (563)
Q Consensus       277 V~~l~~s~~g~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~  355 (563)
                      ++++.+  ++++|++|+.||.|++|+.. +.....+.+|.++|++++|+|++ +|++|+.||+|++||+.+++....+..
T Consensus       125 ~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~  201 (464)
T 3v7d_B          125 ITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEG  201 (464)
T ss_dssp             EEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred             EEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECC
Confidence            566666  56799999999999999965 56777889999999999999988 999999999999999999999999999


Q ss_pred             cccCeEEEecC---CCceEEEEeCCCeEEEEEcCCCcc-----------------------eeeecCCCcceeEEEECCC
Q 008496          356 HSGPTLDVDWR---NNVSFATSSTDNMIYVCKIGENRP-----------------------IKTFAGHQGEVNCVKWDPT  409 (563)
Q Consensus       356 ~~~~~~~~~~~---~~~~~~~~~~d~~i~~~~~~~~~~-----------------------~~~~~~h~~~i~~~~~~~~  409 (563)
                      |..++.++.|.   +...+++++.|+.|++|++.....                       +..+.+|...|.++  +++
T Consensus       202 h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~  279 (464)
T 3v7d_B          202 HNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGH  279 (464)
T ss_dssp             CSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEE
T ss_pred             CCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCC
Confidence            99999988875   446789999999999999976542                       45678898888887  567


Q ss_pred             CCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecC
Q 008496          410 GSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNG  489 (563)
Q Consensus       410 ~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~  489 (563)
                      +++|++|+.|+.|++||+.+++.+..+.+|...|++++|+|++.         +|++|+.||.|++||+++++++..+.+
T Consensus       280 ~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~---------~l~sg~~dg~i~vwd~~~~~~~~~~~~  350 (464)
T 3v7d_B          280 GNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERK---------RCISASMDTTIRIWDLENGELMYTLQG  350 (464)
T ss_dssp             TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTT---------EEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred             CCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCC---------EEEEEeCCCcEEEEECCCCcEEEEEeC
Confidence            89999999999999999999999999999999999999999875         789999999999999999999999999


Q ss_pred             CCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEecCCCEEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496          490 HREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLDFR  562 (563)
Q Consensus       490 h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~~~~i~~l~w~~~g~~la~~~~~~~v~v~~~~  562 (563)
                      |..+|.+++|+  +.+|++|+.||.|++||+.++.....+.....+..++|+++|+.|++|+ ++.|.|||++
T Consensus       351 h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~  420 (464)
T 3v7d_B          351 HTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLR  420 (464)
T ss_dssp             CSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEECTTCCCEEEEEECSSEEEEEE-TTEEEEEETT
T ss_pred             CCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeecCCCCccEEEEEeCCCEEEEec-CCeEEEEECC
Confidence            99999999997  5799999999999999999988877777667778899999999999998 8999999975

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=1.5e-34  Score=283.71  Aligned_cols=276  Identities=23%  Similarity=0.465  Sum_probs=236.1

Q ss_pred             eEEEEECCCCCEEEEEeCCCeEEEEEcC-CceeEee--ccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEe
Q 008496          277 VTTLDWNGEGTLLATGSYDGQARIWSTN-GDLKCTL--SKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQF  353 (563)
Q Consensus       277 V~~l~~s~~g~~l~sg~~dg~i~vw~~~-~~~~~~~--~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~  353 (563)
                      ..+|+||+++ +|++| .|++|+|||.. ++....+  .+|...|++++|+|++++|++|+.|++|++||+++++.+..+
T Consensus        28 ~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~  105 (318)
T 4ggc_A           28 LNLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM  105 (318)
T ss_dssp             CBCEEECTTS-EEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred             ceEEEECCCC-EEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEe
Confidence            5679999986 67665 59999999976 5555444  578889999999999999999999999999999999999999


Q ss_pred             eecccCeEEEecCCCceEEEEeCCCeEEEEEcCCC-cceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCce
Q 008496          354 EFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGEN-RPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKY  432 (563)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~-~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~  432 (563)
                      ..|...+..+.+.+ ..+++++.++.+.+|+.... ..+..+.+|...+.++.+++++++|++++.|++|++||+.+++.
T Consensus       106 ~~h~~~~~~~~~~~-~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~  184 (318)
T 4ggc_A          106 TSHSARVGSLSWNS-YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEG  184 (318)
T ss_dssp             ECCSSCEEEEEEET-TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTT
T ss_pred             cCccceEEEeecCC-CEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcc
Confidence            99988887776654 46888999999999998765 45677889999999999999999999999999999999987653


Q ss_pred             ----eeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEE
Q 008496          433 ----VHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLAS  508 (563)
Q Consensus       433 ----~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~las  508 (563)
                          ......|...|.++.+.|.+..      -..+++++.+++|++||........... +...+..+.|+|++..+++
T Consensus       185 ~~~~~~~~~~~~~~v~~~~~~~~~~~------~~~~~~~~~~~~i~lwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~  257 (318)
T 4ggc_A          185 GWVPLQTFTQHQGAVKAVAWCPWQSN------VLATGGGTSDRHIRIWNVCSGACLSAVD-AHSQVCSILWSPHYKELIS  257 (318)
T ss_dssp             BSCCSEEECCCCSCEEEEEECTTSTT------EEEEEECTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEEETTTTEEEE
T ss_pred             cccceeeecccCCceEEEEecCCCCc------EEEEEecCCCCEEEEEeccccccccccc-ceeeeeeeeecccccceEE
Confidence                3445567889999999987642      2345678889999999999888776655 6678999999999998877


Q ss_pred             Ee--CCCcEEEEecCCCeeEEEEecC-CCEEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496          509 GS--LDKSMHIWSLKEGKIVKTYTGN-GGIFEVCWNKEGDKIAACFANHTVCVLDFR  562 (563)
Q Consensus       509 gs--~dg~v~iw~~~~~~~~~~~~~~-~~i~~l~w~~~g~~la~~~~~~~v~v~~~~  562 (563)
                      ++  .|+.|+|||+.+++++.++.++ +.|++++|+|+|++||+|+.|++|+|||+.
T Consensus       258 ~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~  314 (318)
T 4ggc_A          258 GHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCF  314 (318)
T ss_dssp             EECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCS
T ss_pred             EEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECC
Confidence            65  7999999999999999999874 579999999999999999999999999974

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=4.7e-35  Score=301.16  Aligned_cols=268  Identities=29%  Similarity=0.537  Sum_probs=240.9

Q ss_pred             CCCCeEEEEECCCCCEEEEEeCCCeEEEEEcC-CceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeE
Q 008496          273 KSKDVTTLDWNGEGTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQ  351 (563)
Q Consensus       273 ~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~  351 (563)
                      +...|++++|  ++++|++|+.||.|++|+.. +.....+.+|.++|++++|  ++++|++|+.||+|++||+.+++...
T Consensus       132 ~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~  207 (435)
T 1p22_A          132 TSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLN  207 (435)
T ss_dssp             SCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEE
T ss_pred             CCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEE
Confidence            3467888887  78999999999999999975 5667788999999999999  77899999999999999999999999


Q ss_pred             EeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcce---eeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCC
Q 008496          352 QFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPI---KTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMK  428 (563)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~---~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~  428 (563)
                      .+..|...+.++.|.+ ..+++++.|+.|++|++.....+   ..+.+|...|.+++|  ++++|++|+.||.|++||++
T Consensus       208 ~~~~h~~~v~~l~~~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~  284 (435)
T 1p22_A          208 TLIHHCEAVLHLRFNN-GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTS  284 (435)
T ss_dssp             EECCCCSCEEEEECCT-TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETT
T ss_pred             EEcCCCCcEEEEEEcC-CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECC
Confidence            9999999999999964 58899999999999999877655   678899999999999  78999999999999999999


Q ss_pred             CCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEE
Q 008496          429 QDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLAS  508 (563)
Q Consensus       429 ~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~las  508 (563)
                      +++.+..+..|...|.++.|.+.           ++++|+.||.|++||+++++++..+.+|..+|.+++|  ++.+|++
T Consensus       285 ~~~~~~~~~~~~~~v~~~~~~~~-----------~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~s  351 (435)
T 1p22_A          285 TCEFVRTLNGHKRGIACLQYRDR-----------LVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVS  351 (435)
T ss_dssp             TCCEEEEEECCSSCEEEEEEETT-----------EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEE
T ss_pred             cCcEEEEEcCCCCcEEEEEeCCC-----------EEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEE
Confidence            99999999999999999999532           7899999999999999999999999999999999999  7889999


Q ss_pred             EeCCCcEEEEecCCCe---------eEEEEec-CCCEEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496          509 GSLDKSMHIWSLKEGK---------IVKTYTG-NGGIFEVCWNKEGDKIAACFANHTVCVLDFR  562 (563)
Q Consensus       509 gs~dg~v~iw~~~~~~---------~~~~~~~-~~~i~~l~w~~~g~~la~~~~~~~v~v~~~~  562 (563)
                      |+.||.|++||+.++.         .+..+.+ .+.|.+++|  +|+.|++|+.||.|.|||+.
T Consensus       352 g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~  413 (435)
T 1p22_A          352 GAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFL  413 (435)
T ss_dssp             EETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC--
T ss_pred             EeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECC
Confidence            9999999999997665         6777765 456889999  78899999999999999985

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=2.7e-36  Score=308.72  Aligned_cols=283  Identities=13%  Similarity=0.127  Sum_probs=239.8

Q ss_pred             eEEEEECCCCCEEEEEeCCCeEEEEEcCCce-eEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeee
Q 008496          277 VTTLDWNGEGTLLATGSYDGQARIWSTNGDL-KCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEF  355 (563)
Q Consensus       277 V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~-~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~  355 (563)
                      +++++|+|+|++|++|+.||.+++|+..... ...+..| ..+....|+|++++|++|+.|+.|++||+.++.....+..
T Consensus        59 ~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  137 (420)
T 3vl1_A           59 GKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQA  137 (420)
T ss_dssp             CTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTS
T ss_pred             ccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeeccc
Confidence            5578999999999999999999999986532 2233444 4455557899999999999999999999999988888888


Q ss_pred             cccCeEEEecCCC-ceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceee
Q 008496          356 HSGPTLDVDWRNN-VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVH  434 (563)
Q Consensus       356 ~~~~~~~~~~~~~-~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~  434 (563)
                      |...+.++.|.++ ..+++++.|+.|++|++...+.+..+.+|.+.|.+++|+|++++|++|+.|++|++||+++++.+.
T Consensus       138 h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~  217 (420)
T 3vl1_A          138 HVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIH  217 (420)
T ss_dssp             SSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEE
T ss_pred             ccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeE
Confidence            9999999999754 578899999999999999999999999999999999999999999999999999999999999888


Q ss_pred             eecc---cCCCEEEEEEccCCCC-------------CCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEec-CCCCCEEEE
Q 008496          435 DLRE---HSKEIYTIRWSPTGSG-------------TNNPNQQLILASASFDSTVKLWDVELGKLLYSLN-GHREPVYSL  497 (563)
Q Consensus       435 ~~~~---~~~~i~~~~~~p~~~~-------------~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~h~~~i~~l  497 (563)
                      .+..   |...+.+++|.|.+..             ..+|+. .+|++|+.||.|++||+++++.+..+. +|..+|+++
T Consensus       218 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~  296 (420)
T 3vl1_A          218 TFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYG-KYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSL  296 (420)
T ss_dssp             EECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTT-EEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEE
T ss_pred             EeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCC-CEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeE
Confidence            8774   5677888888664321             123433 468999999999999999998877764 588899999


Q ss_pred             EEcCCCC-EEEEEeCCCcEEEEecCCCee-EEEEec--CCCEEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496          498 AFSPTGE-YLASGSLDKSMHIWSLKEGKI-VKTYTG--NGGIFEVCWNKEGDKIAACFANHTVCVLDFR  562 (563)
Q Consensus       498 ~~spdg~-~lasgs~dg~v~iw~~~~~~~-~~~~~~--~~~i~~l~w~~~g~~la~~~~~~~v~v~~~~  562 (563)
                      +|+|++. +|++|+.||.|++||+++++. +..+..  ...+..+.| ++|+.|++++.|+.|.|||++
T Consensus       297 ~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~  364 (420)
T 3vl1_A          297 TVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVSSGFDTSIKLDIIS  364 (420)
T ss_dssp             EECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEEETTTEEEEEEEEC
T ss_pred             EEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEEecCCccEEEEecc
Confidence            9999998 999999999999999998753 566654  345777755 588899999999999999975

>2xtc_A F-box-like/WD repeat-containing protein TBL1X; transcription; 2.22A {Homo sapiens} PDB: 2xte_A 2xtd_A

Probab=100.00  E-value=1.1e-39  Score=239.21  Aligned_cols=86  Identities=50%  Similarity=0.825  Sum_probs=70.2

Q ss_pred             CcCccchhhhhHHHHHhcCCceehhccccccCCccCCCCCCCCCchhHHHHHHhhheeeeeeeccCCCCCCCcccccccc
Q 008496            3 SITSEELNYLVFRYLQESGLLHSAFVLGYEAGINKCNIDGNLVPPRALITFVQKGLQYLEMEANLSNSDVDMDEDFSFLQ   82 (563)
Q Consensus         3 ~its~evN~Li~rYlqE~g~~~sA~~~~~E~~~~~~~~~~~~ip~gaLv~~~qKgl~y~~~e~~~~~~~~~~~~~~~~~~   82 (563)
                      ||||+||||||||||||+||.||||+|++||+|.++++++.+|||||||+||||||||+++|.++++++...+..  ++.
T Consensus         2 sitsdevN~LI~RYLqEsGf~hsAf~f~~Es~i~~~~~~~~~VppgaLVsllQKGL~Y~~~E~~~~~~g~~~~~~--~~~   79 (90)
T 2xtc_A            2 SITSDEVNFLVYRYLQESGFSHSAFTFGIESHISQSNINGTLVPPAALISILQKGLQYVEAEISINEDGTVFDGR--PIE   79 (90)
T ss_dssp             CCCHHHHHHHHHHHHHHTTCHHHHHHHHHHTTGGGSCCCGGGSCTTHHHHHHHHHHHHHHHHHHTTSSCCTTCC------
T ss_pred             CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhcCCccccccccCCcchHHHHHHHHHHHHHHHHHhcCCCCccCCC--CCC
Confidence            799999999999999999999999999999999999998889999999999999999999999999887765543  345


Q ss_pred             cccccccc
Q 008496           83 PMDLITKD   90 (563)
Q Consensus        83 ~~~~~~~~   90 (563)
                      ++++...+
T Consensus        80 ~~~ll~~~   87 (90)
T 2xtc_A           80 SLSLIDAV   87 (90)
T ss_dssp             --------
T ss_pred             chhhhhhc
Confidence            55555444

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.6e-35  Score=295.39  Aligned_cols=255  Identities=25%  Similarity=0.410  Sum_probs=211.0

Q ss_pred             eeEecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCC--
Q 008496          208 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE--  285 (563)
Q Consensus       208 ~~~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~--  285 (563)
                      +.++.+|...|++++|+|++++||+|+.|+.|+||++.....           .....+    ..+...|++++|+++  
T Consensus         4 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~-----------~~~~~~----~~h~~~v~~~~~~~~~~   68 (379)
T 3jrp_A            4 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH-----------KLIDTL----TGHEGPVWRVDWAHPKF   68 (379)
T ss_dssp             -CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEE-----------EEEEEE----CCCSSCEEEEEECCGGG
T ss_pred             cEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcc-----------eeeeEe----cCCCCcEEEEEeCCCCC
Confidence            457889999999999999999999999999999999863210           111222    235678999999987  


Q ss_pred             CCEEEEEeCCCeEEEEEcCCc---eeEeeccCCCCEEEEEeCCC--CCEEEEeeCCCcEEEEECCCCceeEEeeecccCe
Q 008496          286 GTLLATGSYDGQARIWSTNGD---LKCTLSKHKGPIFSLKWNKK--GDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPT  360 (563)
Q Consensus       286 g~~l~sg~~dg~i~vw~~~~~---~~~~~~~h~~~V~~l~~~~~--~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~  360 (563)
                      +++|++|+.||.|++|+....   ....+..|..+|.+++|+|+  +.+|++++.|++|++||+++....          
T Consensus        69 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~----------  138 (379)
T 3jrp_A           69 GTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTT----------  138 (379)
T ss_dssp             CSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCC----------
T ss_pred             CCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCce----------
Confidence            999999999999999998654   55677889999999999999  999999999999999999765321          


Q ss_pred             EEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECC-------------CCCEEEEEeCCCcEEEEeC
Q 008496          361 LDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDP-------------TGSLLASCSDDVTAKIWNM  427 (563)
Q Consensus       361 ~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~-------------~~~~las~s~dg~i~iwd~  427 (563)
                                                   ....+.+|...|.+++|+|             ++.+|++|+.|+.|++||+
T Consensus       139 -----------------------------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~  189 (379)
T 3jrp_A          139 -----------------------------SPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKY  189 (379)
T ss_dssp             -----------------------------CEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEE
T ss_pred             -----------------------------eeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEe
Confidence                                         1123456888899999999             6999999999999999999


Q ss_pred             CCCc----eeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCe-----EEEEecCCCCCEEEEE
Q 008496          428 KQDK----YVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK-----LLYSLNGHREPVYSLA  498 (563)
Q Consensus       428 ~~~~----~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~-----~~~~~~~h~~~i~~l~  498 (563)
                      +++.    ....+..|...|.+++|+|++.      ...+|++++.||.|++||++.+.     .+.....|..+|++++
T Consensus       190 ~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~------~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~  263 (379)
T 3jrp_A          190 NSDAQTYVLESTLEGHSDWVRDVAWSPTVL------LRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRAS  263 (379)
T ss_dssp             ETTTTEEEEEEEECCCSSCEEEEEECCCCS------SSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEE
T ss_pred             cCCCcceeeEEEEecccCcEeEEEECCCCC------CCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEE
Confidence            7654    4467788999999999999831      01389999999999999998763     2223344888999999


Q ss_pred             EcCCCCEEEEEeCCCcEEEEecCC
Q 008496          499 FSPTGEYLASGSLDKSMHIWSLKE  522 (563)
Q Consensus       499 ~spdg~~lasgs~dg~v~iw~~~~  522 (563)
                      |+|+|++|++++.||.|++|++..
T Consensus       264 ~s~~g~~l~~~~~dg~i~iw~~~~  287 (379)
T 3jrp_A          264 WSLSGNVLALSGGDNKVTLWKENL  287 (379)
T ss_dssp             ECSSSCCEEEEESSSSEEEEEEEE
T ss_pred             EcCCCCEEEEecCCCcEEEEeCCC
Confidence            999999999999999999999874

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.6e-36  Score=313.85  Aligned_cols=294  Identities=12%  Similarity=0.084  Sum_probs=218.7

Q ss_pred             eEecCCCCceEEEEECCC------CCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEE
Q 008496          209 TILEGHTSEVCACAWSPA------GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDW  282 (563)
Q Consensus       209 ~~l~~h~~~V~~~~~sp~------~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~  282 (563)
                      .++.+|.+.|.+++|+|+      +.+||+|+.||+|+||++..+......      .............+...|++++|
T Consensus       201 ~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~------~~~~~~p~~~l~~h~~~v~sv~~  274 (524)
T 2j04_B          201 QTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHV------FKMCEKPSLTLSLADSLITTFDF  274 (524)
T ss_dssp             EEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSE------EECCCSCSEEECCTTTCEEEEEE
T ss_pred             EEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCcccccc------ceeecCceEEEEcCCCCEEEEEe
Confidence            346778899999999997      579999999999999999765321100      00000000011235678999999


Q ss_pred             CCCCCEEEEEeCCCeEEEEEcCC--ceeEeeccCCCCEEEE--EeCCCC-CEEEEeeCCCcEEEEECCCCceeEEeeecc
Q 008496          283 NGEGTLLATGSYDGQARIWSTNG--DLKCTLSKHKGPIFSL--KWNKKG-DYLLTGSCDKTAIVWDVKTEEWKQQFEFHS  357 (563)
Q Consensus       283 s~~g~~l~sg~~dg~i~vw~~~~--~~~~~~~~h~~~V~~l--~~~~~~-~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~  357 (563)
                      ++++ .|++|+.||+|++||+..  .....+.+|..+|+++  .|+|++ .+|+||+.|++|+|||+++++....+..|.
T Consensus       275 s~~~-~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~  353 (524)
T 2j04_B          275 LSPT-TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRF  353 (524)
T ss_dssp             SSSS-EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEEC
T ss_pred             cCCC-eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCccccccccc
Confidence            9864 899999999999999873  3345688999999999  678888 899999999999999999887766666554


Q ss_pred             c--CeEEEecCC-CceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceee
Q 008496          358 G--PTLDVDWRN-NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVH  434 (563)
Q Consensus       358 ~--~~~~~~~~~-~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~  434 (563)
                      .  .+..+.|.+ ...+++++.|++|++|++.....+..+.+|.+.|++++|+|++++|++|+.|++|++||.... ..+
T Consensus       354 ~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~-~~~  432 (524)
T 2j04_B          354 RGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARR-LLH  432 (524)
T ss_dssp             SCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSS-TTT
T ss_pred             ccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHh-hcc
Confidence            3  466788876 457888999999999999998888889999999999999999999999999999999998654 222


Q ss_pred             eecc-----cCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCC-CCeEEEEecCCCCCEEEEEEcCCC---CE
Q 008496          435 DLRE-----HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVE-LGKLLYSLNGHREPVYSLAFSPTG---EY  505 (563)
Q Consensus       435 ~~~~-----~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~-~~~~~~~~~~h~~~i~~l~~spdg---~~  505 (563)
                      .++.     +...+++++|+|++.         ++ ...  +.+++|+.. ++.++..+.+|..+|++|+|||++   .+
T Consensus       433 ~~~~~~~~~~~~~v~~v~~sp~g~---------~~-~~~--~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~  500 (524)
T 2j04_B          433 GIKNSSATQKSLRLWKWDYSIKDD---------KY-RID--SSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKC  500 (524)
T ss_dssp             CC------CCCCEEEECBCCSSSC---------EE-EEC--CCCCCCC-------------CCCSCCCEEECCSTTTTTE
T ss_pred             ccccCccceeeeEEEEeccCCCCC---------eE-Ecc--CCceecccccCCcceeeecCCCceEEEEECCCCCCccHH
Confidence            2211     112467889988774         22 222  234455443 477888899999999999999996   49


Q ss_pred             EEEEeCCCcEEEEecCC
Q 008496          506 LASGSLDKSMHIWSLKE  522 (563)
Q Consensus       506 lasgs~dg~v~iw~~~~  522 (563)
                      ||+|+.||.|+||++..
T Consensus       501 lAsg~~~g~vrlw~l~~  517 (524)
T 2j04_B          501 YAFSNSAGLLTLEYLSL  517 (524)
T ss_dssp             EEEECTTSEEEEEECSC
T ss_pred             HHhhccCceEEEEEccc
Confidence            99999999999999864

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.3e-37  Score=311.78  Aligned_cols=299  Identities=12%  Similarity=0.136  Sum_probs=238.2

Q ss_pred             CCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEee-------------e---cccccCCCCe
Q 008496          214 HTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHV-------------K---GRTNEKSKDV  277 (563)
Q Consensus       214 h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~-------------~---~~~~~~~~~V  277 (563)
                      -...|.+++|||||+++||++.|++|+  +...+...   ..++..+..+...             .   .....+...|
T Consensus        14 ~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~l---~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~~~~~~~V   88 (588)
T 2j04_A           14 FEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAKDI---NCNSKNLFHVKEFPLEFENKLDFELAQQNGLLNSQPVCYP   88 (588)
T ss_dssp             CSSSSCCEEECTTSCEEEECSSSEEEE--EECCCSCC---SSBGGGTEEEEEECCCCCCTTTTSCCCSSCSSTTSCSCCE
T ss_pred             hhccEEEEEECCCCCEEEEEcCCceee--ccccccee---cCCCccEEEEEECCCCCcceEEEEeCCCceEeecCCCCcE
Confidence            347899999999999999999999999  64444322   1222222222110             0   0011235779


Q ss_pred             EEEEECCCCCEEEEEeCCCeEEEEEcCCceeEeeccCCC-----CEEEEEeCCCCCEEEEeeCCCcEEEEECCCCce---
Q 008496          278 TTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKG-----PIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEW---  349 (563)
Q Consensus       278 ~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~-----~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~---  349 (563)
                      ++++|||+|.+||+++.||.|++|+..+ +...+. |..     .|.+++|||+|++|++|+.||+|++||+.++..   
T Consensus        89 ~~vawSPdG~~LAs~s~dg~V~iwd~~~-~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~  166 (588)
T 2j04_A           89 RVCKPSPIDDWMAVLSNNGNVSVFKDNK-MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTP  166 (588)
T ss_dssp             EEEEECSSSSCEEEEETTSCEEEEETTE-EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCC
T ss_pred             EEEEECCCCCEEEEEeCCCcEEEEeCCc-eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccc
Confidence            9999999999999999999999999766 555566 666     499999999999999999999999999998753   


Q ss_pred             ----eEEe----eecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcc---eeee-cCCCcceeEEEECCCCCEEEEEe
Q 008496          350 ----KQQF----EFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRP---IKTF-AGHQGEVNCVKWDPTGSLLASCS  417 (563)
Q Consensus       350 ----~~~~----~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~---~~~~-~~h~~~i~~~~~~~~~~~las~s  417 (563)
                          ...+    ..|...+.+++|.++. +++++.|++|++|++.....   .+++ .+|...|.+++|+  ++.||+++
T Consensus       167 ~~i~l~ti~~~~~gh~~~V~sVawSPdg-Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~  243 (588)
T 2j04_A          167 EFYFESSIRLSDAGSKDWVTHIVWYEDV-LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTC  243 (588)
T ss_dssp             CCEEEEEEECSCTTCCCCEEEEEEETTE-EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEEC
T ss_pred             cceeeeeeecccccccccEEEEEEcCCc-EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--CCEEEEEe
Confidence                4555    4455789999999888 99999999999999987763   3456 4888999999999  68999988


Q ss_pred             CCCcEEEEeCCCCceeeeecccCCCEEEEEE--ccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEE
Q 008496          418 DDVTAKIWNMKQDKYVHDLREHSKEIYTIRW--SPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVY  495 (563)
Q Consensus       418 ~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~--~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~  495 (563)
                       +++|++||+.+++......+|...++.+.|  +|++.         .|++++.||+ ++|...                
T Consensus       244 -~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~---------~La~a~edG~-klw~~d----------------  296 (588)
T 2j04_A          244 -PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKEST---------ILLMSNKTSY-KVLLED----------------  296 (588)
T ss_dssp             -SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCE---------EEEECSSCEE-EEEESS----------------
T ss_pred             -CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCC---------EEEEEcCCCC-EEEeec----------------
Confidence             699999999988874444489999999999  88774         7899999999 999876                


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEecCCCEEEEEEcCCCCEEEEEEC
Q 008496          496 SLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFA  552 (563)
Q Consensus       496 ~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~~~~i~~l~w~~~g~~la~~~~  552 (563)
                      .++|+||+..+|+.  |+++++|+...+. ...+.+...|++++|+|||+.||+++.
T Consensus       297 ~~~~spd~~l~a~~--d~~v~lW~~~g~~-l~~~~~~~~I~~va~SPdG~~lA~~~~  350 (588)
T 2j04_A          297 ELHVTADNIIAPYL--EKKFKKWSTIWNE-FNNYETTLVIHGISLSPDGYSIAIVYD  350 (588)
T ss_dssp             SEEEECCCSSHHHH--HHHHHHTTTTTTS-SSSSCCEEEEEEEEECTTSSEEEEEEE
T ss_pred             cEEECCCceEEEEc--CCEEEEEECCCCc-eeeeccceEEEEEEECCCCCEEEEEEe
Confidence            26699999998875  9999999985544 334455556899999999999999864

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=1.9e-35  Score=293.44  Aligned_cols=269  Identities=14%  Similarity=0.197  Sum_probs=236.9

Q ss_pred             cCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCce----eEeeccCCCCEEEEEeCCCCC-EEEEeeCCCcEEEEEC-C
Q 008496          272 EKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDL----KCTLSKHKGPIFSLKWNKKGD-YLLTGSCDKTAIVWDV-K  345 (563)
Q Consensus       272 ~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~----~~~~~~h~~~V~~l~~~~~~~-~l~s~s~D~~v~iwd~-~  345 (563)
                      .|...|++++|+|++.+|++|+.||.|++|+.....    ...+..|..+|++++|+|+++ +|++|+.|+.|++||+ .
T Consensus         9 ~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~   88 (342)
T 1yfq_A            9 APKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIG   88 (342)
T ss_dssp             CCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSS
T ss_pred             CCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEecc
Confidence            456789999999999999999999999999976543    455668999999999999999 9999999999999999 8


Q ss_pred             CCceeEEeee--cccCeEEEecCCCceEEEEeCCCeEEEEEcCC---------CcceeeecCCCcceeEEEECCCCCEEE
Q 008496          346 TEEWKQQFEF--HSGPTLDVDWRNNVSFATSSTDNMIYVCKIGE---------NRPIKTFAGHQGEVNCVKWDPTGSLLA  414 (563)
Q Consensus       346 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~---------~~~~~~~~~h~~~i~~~~~~~~~~~la  414 (563)
                      ++.. ..+..  |...+.++.|.+...+++++.|+.|++|++..         .+++..+. |...|.+++|+|++  ++
T Consensus        89 ~~~~-~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~--l~  164 (342)
T 1yfq_A           89 SPSF-QALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNSSR--LI  164 (342)
T ss_dssp             SSSE-EECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECSSE--EE
T ss_pred             CCce-EeccccCCCCceEEEEeCCCCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecCCc--EE
Confidence            7765 56667  88899999997777889999999999999987         67777776 88999999999987  89


Q ss_pred             EEeCCCcEEEEeCCC-Cc--eeeeecccCCCEEEEEEcc-CCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC------eEE
Q 008496          415 SCSDDVTAKIWNMKQ-DK--YVHDLREHSKEIYTIRWSP-TGSGTNNPNQQLILASASFDSTVKLWDVELG------KLL  484 (563)
Q Consensus       415 s~s~dg~i~iwd~~~-~~--~~~~~~~~~~~i~~~~~~p-~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~------~~~  484 (563)
                      +++.|+.|++||+++ ..  .......|...+.+++|+| ++.         ++++++.||.|++|+++..      +.+
T Consensus       165 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~---------~l~~~~~dg~i~i~~~~~~~~~~~~~~~  235 (342)
T 1yfq_A          165 VGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQE---------GYACSSIDGRVAVEFFDDQGDDYNSSKR  235 (342)
T ss_dssp             EEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGC---------EEEEEETTSEEEEEECCTTCCSTTCTTC
T ss_pred             EEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCC---------EEEEEecCCcEEEEEEcCCCcccccccc
Confidence            999999999999987 44  2334456888999999999 875         7899999999999999876      777


Q ss_pred             EEecCCCC---------CEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEec--CCCEEEEEEcCCCCEEEEEECC
Q 008496          485 YSLNGHRE---------PVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTG--NGGIFEVCWNKEGDKIAACFAN  553 (563)
Q Consensus       485 ~~~~~h~~---------~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~--~~~i~~l~w~~~g~~la~~~~~  553 (563)
                      ..+..|..         +|++++|+|++++|++|+.||.|++||+.+++++..+..  ...|.+++  |+|++|++|+.|
T Consensus       236 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~D  313 (342)
T 1yfq_A          236 FAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLATSD  313 (342)
T ss_dssp             EEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEEEEEC
T ss_pred             eeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--CCCCeEEEEecC
Confidence            78887765         999999999999999999999999999999999998876  45688998  999999999999


Q ss_pred             Ce
Q 008496          554 HT  555 (563)
Q Consensus       554 ~~  555 (563)
                      |.
T Consensus       314 g~  315 (342)
T 1yfq_A          314 DT  315 (342)
T ss_dssp             TH
T ss_pred             Cc
Confidence            87

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=4.3e-34  Score=280.48  Aligned_cols=279  Identities=24%  Similarity=0.442  Sum_probs=227.3

Q ss_pred             eEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEEeCCCe
Q 008496          218 VCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQ  297 (563)
Q Consensus       218 V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~dg~  297 (563)
                      .++++|||++ +||+| .|++|+|||+.++...             +.+.  ...+...|++++|+|+|++|++|+.||.
T Consensus        28 ~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~-------------~~~~--~~~~~~~V~~v~~~~~~~~l~sgs~Dg~   90 (318)
T 4ggc_A           28 LNLVDWSSGN-VLAVA-LDNSVYLWSASSGDIL-------------QLLQ--MEQPGEYISSVAWIKEGNYLAVGTSSAE   90 (318)
T ss_dssp             CBCEEECTTS-EEEEE-ETTEEEEEETTTCCEE-------------EEEE--CCSTTCCEEEEEECTTSSEEEEEETTSE
T ss_pred             ceEEEECCCC-EEEEE-eCCEEEEEECCCCCEE-------------EEEE--ecCCCCeEEEEEECCCCCEEEEEECCCc
Confidence            4689999886 77765 5999999999876421             1111  1234577999999999999999999999


Q ss_pred             EEEEEcC-CceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCc-eeEEeeecccCeEEEecCC-CceEEEE
Q 008496          298 ARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEE-WKQQFEFHSGPTLDVDWRN-NVSFATS  374 (563)
Q Consensus       298 i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~  374 (563)
                      |++|+.. ++....+.+|...+.++.+  ++..+++++.++.+++|+..+.. ....+..|...+..+.+.. ...++++
T Consensus        91 v~iw~~~~~~~~~~~~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~  168 (318)
T 4ggc_A           91 VQLWDVQQQKRLRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASG  168 (318)
T ss_dssp             EEEEETTTTEEEEEEECCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred             EEEeecCCceeEEEecCccceEEEeec--CCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEE
Confidence            9999976 5667788899999887654  56799999999999999987654 4556777888888877754 4578899


Q ss_pred             eCCCeEEEEEcCCCcc----eeeecCCCcceeEEEECCCCCE---EEEEeCCCcEEEEeCCCCceeeeecccCCCEEEEE
Q 008496          375 STDNMIYVCKIGENRP----IKTFAGHQGEVNCVKWDPTGSL---LASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIR  447 (563)
Q Consensus       375 ~~d~~i~~~~~~~~~~----~~~~~~h~~~i~~~~~~~~~~~---las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~  447 (563)
                      +.|+.|++|++...+.    ......|.+.|.+++++|++..   +++++.+++|++||......... ..+...+..+.
T Consensus       169 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~-~~~~~~v~~~~  247 (318)
T 4ggc_A          169 GNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSA-VDAHSQVCSIL  247 (318)
T ss_dssp             ETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEE-EECSSCEEEEE
T ss_pred             ecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccc-ccceeeeeeee
Confidence            9999999999976542    3455678889999999998753   34677899999999988876654 34667899999


Q ss_pred             EccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 008496          448 WSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEG  523 (563)
Q Consensus       448 ~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~  523 (563)
                      |+|.+.       .+++++|+.|+.|+|||+++++++.++.+|..+|++++|+|||++|||||.||+|+|||+.+.
T Consensus       248 ~~~~~~-------~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~  316 (318)
T 4ggc_A          248 WSPHYK-------ELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFEL  316 (318)
T ss_dssp             EETTTT-------EEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCC
T ss_pred             eccccc-------ceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence            999764       233445568999999999999999999999999999999999999999999999999999754

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=3.5e-34  Score=295.59  Aligned_cols=279  Identities=24%  Similarity=0.444  Sum_probs=247.4

Q ss_pred             ceeEecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCC
Q 008496          207 DVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG  286 (563)
Q Consensus       207 ~~~~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g  286 (563)
                      .+..+.+|...|.+++|+  +.+|++|+.||+|++|++.++..             ...+    ..+...|.+++|+  +
T Consensus       151 ~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~-------------~~~~----~~h~~~v~~~~~~--~  209 (445)
T 2ovr_B          151 CLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGEC-------------IHTL----YGHTSTVRCMHLH--E  209 (445)
T ss_dssp             EEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEE-------------EEEE----CCCSSCEEEEEEE--T
T ss_pred             EEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcE-------------EEEE----CCCCCcEEEEEec--C
Confidence            456788999999999997  67999999999999999876531             1112    2346789999995  5


Q ss_pred             CEEEEEeCCCeEEEEEcC-CceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEec
Q 008496          287 TLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDW  365 (563)
Q Consensus       287 ~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~  365 (563)
                      ..+++|+.||.|++|+.. +.....+.+|..+|.++.|  ++.++++|+.|+.|++||+++++....+..|...+.++.|
T Consensus       210 ~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~  287 (445)
T 2ovr_B          210 KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF  287 (445)
T ss_dssp             TEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE
T ss_pred             CEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE
Confidence            789999999999999976 5667788899999999999  6789999999999999999999999999999999999999


Q ss_pred             CCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecc---cCCC
Q 008496          366 RNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLRE---HSKE  442 (563)
Q Consensus       366 ~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~---~~~~  442 (563)
                       +...+++++.|+.|++|++.+.+++..+.+|...+.++.++  +++|++|+.||.|++||+++++.+..+..   |...
T Consensus       288 -~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~  364 (445)
T 2ovr_B          288 -DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSA  364 (445)
T ss_dssp             -CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSC
T ss_pred             -CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEe--CCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCC
Confidence             67788999999999999999999999999999999988874  67999999999999999999999888876   8889


Q ss_pred             EEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEe-----cCCCCCEEEEEEcCCCCEEEEEeCCCc---
Q 008496          443 IYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSL-----NGHREPVYSLAFSPTGEYLASGSLDKS---  514 (563)
Q Consensus       443 i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-----~~h~~~i~~l~~spdg~~lasgs~dg~---  514 (563)
                      |++++|++.           +|++|+.||.|++||+.+++.+..+     .+|..+|++++|+|+|.+||+|+.||+   
T Consensus       365 v~~~~~~~~-----------~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~  433 (445)
T 2ovr_B          365 VTCLQFNKN-----------FVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEET  433 (445)
T ss_dssp             EEEEEECSS-----------EEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCC
T ss_pred             EEEEEECCC-----------EEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCcc
Confidence            999999642           7999999999999999999998887     468889999999999999999999998   


Q ss_pred             -EEEEecCC
Q 008496          515 -MHIWSLKE  522 (563)
Q Consensus       515 -v~iw~~~~  522 (563)
                       |.|||+..
T Consensus       434 ~l~v~df~~  442 (445)
T 2ovr_B          434 KLLVLDFDV  442 (445)
T ss_dssp             EEEEEECCC
T ss_pred             EEEEEECCC
Confidence             99999864

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=5.9e-35  Score=292.84  Aligned_cols=276  Identities=14%  Similarity=0.174  Sum_probs=216.6

Q ss_pred             CCCeEEEEECCCCCEEEEEeCCC-------eEEEEEcCCce-----------eEeeccCCCCEEEEEeCCCCCEEEEe--
Q 008496          274 SKDVTTLDWNGEGTLLATGSYDG-------QARIWSTNGDL-----------KCTLSKHKGPIFSLKWNKKGDYLLTG--  333 (563)
Q Consensus       274 ~~~V~~l~~s~~g~~l~sg~~dg-------~i~vw~~~~~~-----------~~~~~~h~~~V~~l~~~~~~~~l~s~--  333 (563)
                      ..+|++++|+|||++|++|+.+.       .|++|+.+...           ...+..|...|++++++  ++.+++|  
T Consensus        14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~g~~   91 (365)
T 4h5i_A           14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIILVGCN   91 (365)
T ss_dssp             SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEEEECC
T ss_pred             CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEEEEEC
Confidence            35799999999999999998643       59999975321           12467888888888764  4566655  


Q ss_pred             ---------eCCCcEEEEECCCCceeEEe----ee-----cccCeEEEecCCCce-E--EEEeCCCeEEEEEcCCCccee
Q 008496          334 ---------SCDKTAIVWDVKTEEWKQQF----EF-----HSGPTLDVDWRNNVS-F--ATSSTDNMIYVCKIGENRPIK  392 (563)
Q Consensus       334 ---------s~D~~v~iwd~~~~~~~~~~----~~-----~~~~~~~~~~~~~~~-~--~~~~~d~~i~~~~~~~~~~~~  392 (563)
                               +.|+++++|++.+......+    ..     +...+..+.|.++.. +  ++++.|++|++|++.+..++.
T Consensus        92 ~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~  171 (365)
T 4h5i_A           92 ENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKF  171 (365)
T ss_dssp             CCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEE
T ss_pred             CCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEE
Confidence                     45788999988654322111    11     112355667765543 3  345578999999999998888


Q ss_pred             eecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceee--eecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCC
Q 008496          393 TFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVH--DLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFD  470 (563)
Q Consensus       393 ~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~--~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~d  470 (563)
                      .+. |.+.|.+++|+|+|++|++++.++ +++|+..++..+.  ....|...|.+++|+|++.         ++++++.|
T Consensus       172 ~~~-~~~~V~~v~fspdg~~l~s~s~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~---------~l~~~s~d  240 (365)
T 4h5i_A          172 EIE-TRGEVKDLHFSTDGKVVAYITGSS-LEVISTVTGSCIARKTDFDKNWSLSKINFIADDT---------VLIAASLK  240 (365)
T ss_dssp             EEE-CSSCCCEEEECTTSSEEEEECSSC-EEEEETTTCCEEEEECCCCTTEEEEEEEEEETTE---------EEEEEEES
T ss_pred             EeC-CCCceEEEEEccCCceEEecccee-EEEEEeccCcceeeeecCCCCCCEEEEEEcCCCC---------EEEEEecC
Confidence            875 778899999999999999998665 5666666665543  3456888999999999875         78888888


Q ss_pred             C----eEEEEeCCCCeE----EEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEE-ec-CCCEEEEEE
Q 008496          471 S----TVKLWDVELGKL----LYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTY-TG-NGGIFEVCW  540 (563)
Q Consensus       471 g----~i~iwd~~~~~~----~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~-~~-~~~i~~l~w  540 (563)
                      +    .+++|++..+..    ...+.+|..+|++++|||||++||+|+.|++|+|||+.+++++.++ .+ ...|++|+|
T Consensus       241 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~f  320 (365)
T 4h5i_A          241 KGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTI  320 (365)
T ss_dssp             SSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEE
T ss_pred             CcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEE
Confidence            7    688999876653    3467789999999999999999999999999999999999999887 43 467999999


Q ss_pred             cCCCCEEEEEECCCeEEEEEee
Q 008496          541 NKEGDKIAACFANHTVCVLDFR  562 (563)
Q Consensus       541 ~~~g~~la~~~~~~~v~v~~~~  562 (563)
                      +|||++||+|+.|++|+|||+.
T Consensus       321 Spdg~~laS~S~D~tvrvw~ip  342 (365)
T 4h5i_A          321 SPDSTYVASVSAANTIHIIKLP  342 (365)
T ss_dssp             CTTSCEEEEEETTSEEEEEECC
T ss_pred             CCCCCEEEEEeCCCeEEEEEcC
Confidence            9999999999999999999984

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=1.2e-33  Score=287.37  Aligned_cols=281  Identities=16%  Similarity=0.293  Sum_probs=232.7

Q ss_pred             cCCCCeEEEEECC-CCCEEEEEeCCCeEEEEEcCCce-eEee-------------ccCCCCEEEEEeCC-CCCEEEEeeC
Q 008496          272 EKSKDVTTLDWNG-EGTLLATGSYDGQARIWSTNGDL-KCTL-------------SKHKGPIFSLKWNK-KGDYLLTGSC  335 (563)
Q Consensus       272 ~~~~~V~~l~~s~-~g~~l~sg~~dg~i~vw~~~~~~-~~~~-------------~~h~~~V~~l~~~~-~~~~l~s~s~  335 (563)
                      .|...|++++|+| ++++|++|+.||.|++|+..... ...+             .+|..+|.+++|+| ++.+|++++.
T Consensus        41 ~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~  120 (408)
T 4a11_B           41 IHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSF  120 (408)
T ss_dssp             CCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEET
T ss_pred             ccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeC
Confidence            3567899999999 99999999999999999986432 1111             25999999999999 7789999999


Q ss_pred             CCcEEEEECCCCceeEEeeecccCeEEEecCC----CceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCC
Q 008496          336 DKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN----NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGS  411 (563)
Q Consensus       336 D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~  411 (563)
                      |+.|++||+.+++....+. +...+..+.|..    ...+++++.++.|++|++....++..+.+|.+.|.+++|+|+++
T Consensus       121 d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~  199 (408)
T 4a11_B          121 DKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYD  199 (408)
T ss_dssp             TSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCT
T ss_pred             CCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCC
Confidence            9999999999998877766 455666666653    33688999999999999999999999999999999999999998


Q ss_pred             -EEEEEeCCCcEEEEeCCCCc-eeeee---------------cccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEE
Q 008496          412 -LLASCSDDVTAKIWNMKQDK-YVHDL---------------REHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVK  474 (563)
Q Consensus       412 -~las~s~dg~i~iwd~~~~~-~~~~~---------------~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~  474 (563)
                       +|++|+.||.|++||+++.. .+..+               ..|...|.+++|+|++.         +|++++.||.|+
T Consensus       200 ~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---------~l~~~~~dg~i~  270 (408)
T 4a11_B          200 YILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGL---------HLLTVGTDNRMR  270 (408)
T ss_dssp             TEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSS---------EEEEEETTSCEE
T ss_pred             cEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCC---------EEEEecCCCeEE
Confidence             58999999999999997664 23333               56889999999999875         789999999999


Q ss_pred             EEeCCCCeEEEEecCCC-----CCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEecC-CCEEEEEEcCCCCEEE
Q 008496          475 LWDVELGKLLYSLNGHR-----EPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGN-GGIFEVCWNKEGDKIA  548 (563)
Q Consensus       475 iwd~~~~~~~~~~~~h~-----~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~~-~~i~~l~w~~~g~~la  548 (563)
                      +||+.+++....+..+.     ..+........+..+++++.|+.|++||+.+++.+..+.++ ..|.+++|+|+|++|+
T Consensus       271 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  350 (408)
T 4a11_B          271 LWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELY  350 (408)
T ss_dssp             EEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEE
T ss_pred             EEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEE
Confidence            99999887655443221     12222222334566777788999999999999999998754 5799999999999999


Q ss_pred             EEECCCeEEEEEee
Q 008496          549 ACFANHTVCVLDFR  562 (563)
Q Consensus       549 ~~~~~~~v~v~~~~  562 (563)
                      +|+.||.|.|||++
T Consensus       351 s~~~dg~i~iw~~~  364 (408)
T 4a11_B          351 SGSRDCNILAWVPS  364 (408)
T ss_dssp             EEETTSCEEEEEEC
T ss_pred             EECCCCeEEEEeCC
Confidence            99999999999986

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=4e-34  Score=311.90  Aligned_cols=243  Identities=26%  Similarity=0.408  Sum_probs=213.5

Q ss_pred             ccCCCCeEEEEECCCC-CEEEEEeCCCeEEEEEcCC------ceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEE
Q 008496          271 NEKSKDVTTLDWNGEG-TLLATGSYDGQARIWSTNG------DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWD  343 (563)
Q Consensus       271 ~~~~~~V~~l~~s~~g-~~l~sg~~dg~i~vw~~~~------~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd  343 (563)
                      ..|...|++++|+|++ .+|+||+.||.|++|+...      .....+.+|...|.+++|+|++++|++|+.|++|++||
T Consensus       379 ~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd  458 (694)
T 3dm0_A          379 RAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWD  458 (694)
T ss_dssp             ECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             ccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEE
Confidence            3567889999999864 7999999999999999753      23457889999999999999999999999999999999


Q ss_pred             CCCCceeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEE
Q 008496          344 VKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAK  423 (563)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~  423 (563)
                      +.++..                                         +..+.+|...|.+++|+|++++|+||+.|++|+
T Consensus       459 ~~~~~~-----------------------------------------~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~  497 (694)
T 3dm0_A          459 LAAGVS-----------------------------------------TRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIK  497 (694)
T ss_dssp             TTTTEE-----------------------------------------EEEEECCSSCEEEEEECTTSSCEEEEETTSCEE
T ss_pred             CCCCcc-----------------------------------------eeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEE
Confidence            987642                                         234567999999999999999999999999999


Q ss_pred             EEeCCCCceeee---ecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEc
Q 008496          424 IWNMKQDKYVHD---LREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFS  500 (563)
Q Consensus       424 iwd~~~~~~~~~---~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s  500 (563)
                      +||.........   ..+|...|.+++|+|++..       .+|++|+.|++|++||+++++++..+.+|...|++++|+
T Consensus       498 iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-------~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~s  570 (694)
T 3dm0_A          498 LWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQ-------PTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVS  570 (694)
T ss_dssp             EECTTSCEEEEECSSTTSCSSCEEEEEECSCSSS-------CEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEC
T ss_pred             EEECCCCcceeeccCCCCCCCcEEEEEEeCCCCc-------ceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEe
Confidence            999876543322   2468889999999997631       278999999999999999999999999999999999999


Q ss_pred             CCCCEEEEEeCCCcEEEEecCCCeeEEEEecCCCEEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496          501 PTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLDFR  562 (563)
Q Consensus       501 pdg~~lasgs~dg~v~iw~~~~~~~~~~~~~~~~i~~l~w~~~g~~la~~~~~~~v~v~~~~  562 (563)
                      |+|++|++|+.||.|+|||+.+++.+..+..+..|..++|+|++..|+++. ++.|.|||++
T Consensus       571 pdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~  631 (694)
T 3dm0_A          571 PDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHALCFSPNRYWLCAAT-EHGIKIWDLE  631 (694)
T ss_dssp             TTSSEEEEEETTSBCEEEETTTTEEEECCBCSSCEEEEEECSSSSEEEEEE-TTEEEEEETT
T ss_pred             CCCCEEEEEeCCCeEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEEc-CCCEEEEECC
Confidence            999999999999999999999999998888888899999999999998885 4569999975

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.7e-33  Score=290.81  Aligned_cols=299  Identities=13%  Similarity=0.054  Sum_probs=230.4

Q ss_pred             CceEEEEECCCCCEEEEeeCCCcEEEEecCCCC---CcCCCCCCCc------e-----------EE-----EEE------
Q 008496          216 SEVCACAWSPAGSLLASGSGDSTARIWTIADGT---SNGGAQNGPL------N-----------VL-----VLK------  264 (563)
Q Consensus       216 ~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~---~~~~~~~~~~------~-----------~~-----~~~------  264 (563)
                      .++.+++|+|+|++|+++ .++.|++|++.++.   ..........      .           ..     ..+      
T Consensus         5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (450)
T 2vdu_B            5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS   83 (450)
T ss_dssp             CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred             ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence            468899999999976665 57899999998776   2111000000      0           00     000      


Q ss_pred             ---------eeecccccCCCCeEEEEECCCCCEE-EEEeCCCeEEEEEcC---CceeEeec--cCCCCEEEEEeCCCCCE
Q 008496          265 ---------HVKGRTNEKSKDVTTLDWNGEGTLL-ATGSYDGQARIWSTN---GDLKCTLS--KHKGPIFSLKWNKKGDY  329 (563)
Q Consensus       265 ---------~~~~~~~~~~~~V~~l~~s~~g~~l-~sg~~dg~i~vw~~~---~~~~~~~~--~h~~~V~~l~~~~~~~~  329 (563)
                               ........+...|++++|+|+|++| ++|+.||.|++|+..   +.....+.  .|...|.+++|+|++++
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~  163 (450)
T 2vdu_B           84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTT  163 (450)
T ss_dssp             ----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSE
T ss_pred             ccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCE
Confidence                     0000011344579999999999996 899999999999976   44555554  67789999999999999


Q ss_pred             EEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCC
Q 008496          330 LLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT  409 (563)
Q Consensus       330 l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~  409 (563)
                      |++|+.|+.+++|++.++....                                     .++..+.+|.+.|++++|+|+
T Consensus       164 l~~~~~~g~v~~~~~~~~~~~~-------------------------------------~~~~~~~~h~~~v~~~~~sp~  206 (450)
T 2vdu_B          164 VIIADKFGDVYSIDINSIPEEK-------------------------------------FTQEPILGHVSMLTDVHLIKD  206 (450)
T ss_dssp             EEEEETTSEEEEEETTSCCCSS-------------------------------------CCCCCSEECSSCEEEEEEEEC
T ss_pred             EEEEeCCCcEEEEecCCccccc-------------------------------------ccceeeecccCceEEEEEcCC
Confidence            9999999999999987654211                                     022355678999999999999


Q ss_pred             ---CCEEEEEeCCCcEEEEeCCCCceeee-ecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEE
Q 008496          410 ---GSLLASCSDDVTAKIWNMKQDKYVHD-LREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLY  485 (563)
Q Consensus       410 ---~~~las~s~dg~i~iwd~~~~~~~~~-~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~  485 (563)
                         +++|++|+.|++|++||+.++..+.. +.+|...|.+++|+ ++.         +|++|+.|+.|++||+.+++++.
T Consensus       207 ~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~---------~l~s~~~d~~v~vwd~~~~~~~~  276 (450)
T 2vdu_B          207 SDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDY---------LLLSAGGDDKIFAWDWKTGKNLS  276 (450)
T ss_dssp             TTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STT---------EEEEEESSSEEEEEETTTCCEEE
T ss_pred             CCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCC---------EEEEEeCCCeEEEEECCCCcEee
Confidence               99999999999999999999888777 56899999999999 765         78999999999999999999888


Q ss_pred             EecC-------------------------CCCCEEEEEEcCCCCEEEEEe-CCCcEEEEec--CCC---eeEEEEecCCC
Q 008496          486 SLNG-------------------------HREPVYSLAFSPTGEYLASGS-LDKSMHIWSL--KEG---KIVKTYTGNGG  534 (563)
Q Consensus       486 ~~~~-------------------------h~~~i~~l~~spdg~~lasgs-~dg~v~iw~~--~~~---~~~~~~~~~~~  534 (563)
                      .+..                         ....|.+++|+|++++|++++ .|+.|+||++  .++   +.+..+..++.
T Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~~~  356 (450)
T 2vdu_B          277 TFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFPYN  356 (450)
T ss_dssp             EEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECSSC
T ss_pred             eecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccCCc
Confidence            7753                         235699999999999999999 8999999999  665   67777877788


Q ss_pred             EEEEEEcCCCCEEEEEEC------CCeEEEEEee
Q 008496          535 IFEVCWNKEGDKIAACFA------NHTVCVLDFR  562 (563)
Q Consensus       535 i~~l~w~~~g~~la~~~~------~~~v~v~~~~  562 (563)
                      |.+++|+|++..++++..      +..|.||.++
T Consensus       357 v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~  390 (450)
T 2vdu_B          357 VISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYN  390 (450)
T ss_dssp             EEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEE
T ss_pred             eEEEEecCCcEEEEEecccCCCCCCcceEEEEEE
Confidence            999999996534443332      3447888764

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=7.5e-34  Score=285.26  Aligned_cols=241  Identities=20%  Similarity=0.385  Sum_probs=213.4

Q ss_pred             CCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCc---eeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCce
Q 008496          273 KSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGD---LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEW  349 (563)
Q Consensus       273 ~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~---~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~  349 (563)
                      +..+|++++|+|+|++|++|+.||.|++|+....   ....+.+|..+|.+++|+|++++|++++.|+.|++||+.++++
T Consensus         7 ~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~   86 (372)
T 1k8k_C            7 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTW   86 (372)
T ss_dssp             CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEE
T ss_pred             cCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCee
Confidence            4577999999999999999999999999998765   6778889999999999999999999999999999999876643


Q ss_pred             eEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCC
Q 008496          350 KQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQ  429 (563)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~  429 (563)
                      ...                                       ..+.+|...|.+++|+|++++|++|+.|+.|++||+..
T Consensus        87 ~~~---------------------------------------~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~  127 (372)
T 1k8k_C           87 KPT---------------------------------------LVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQ  127 (372)
T ss_dssp             EEE---------------------------------------EECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEET
T ss_pred             eee---------------------------------------EEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecC
Confidence            221                                       22346788899999999999999999999999999987


Q ss_pred             Cce----eeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeC------------------CCCeEEEEe
Q 008496          430 DKY----VHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDV------------------ELGKLLYSL  487 (563)
Q Consensus       430 ~~~----~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~------------------~~~~~~~~~  487 (563)
                      ...    ......|...|.+++|+|++.         +|++++.||.|++||+                  ..++++..+
T Consensus       128 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~---------~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (372)
T 1k8k_C          128 ENDWWVCKHIKKPIRSTVLSLDWHPNSV---------LLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFES  198 (372)
T ss_dssp             TTTEEEEEEECTTCCSCEEEEEECTTSS---------EEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEEC
T ss_pred             CCcceeeeeeecccCCCeeEEEEcCCCC---------EEEEEcCCCCEEEEEcccccccccccccccccccchhhheEec
Confidence            762    233357889999999999875         7899999999999995                  467889999


Q ss_pred             cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEecCC-CEEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496          488 NGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNG-GIFEVCWNKEGDKIAACFANHTVCVLDFR  562 (563)
Q Consensus       488 ~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~~~-~i~~l~w~~~g~~la~~~~~~~v~v~~~~  562 (563)
                      .+|..+|.+++|+|++++|++|+.||.|++||+++++.+..+..+. .|..++|+|+|+.|++| .|+.+.||+++
T Consensus       199 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~  273 (372)
T 1k8k_C          199 SSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYD  273 (372)
T ss_dssp             CCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEE
T ss_pred             CCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEcc
Confidence            9999999999999999999999999999999999999998887654 79999999999999888 89999999986

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5e-34  Score=287.04  Aligned_cols=257  Identities=25%  Similarity=0.400  Sum_probs=215.6

Q ss_pred             ceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECC--CCceeEEeeecccCeEEEecCC---CceEEEEeCCCeE
Q 008496          306 DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVK--TEEWKQQFEFHSGPTLDVDWRN---NVSFATSSTDNMI  380 (563)
Q Consensus       306 ~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~--~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~d~~i  380 (563)
                      .+...+.+|.++|++++|+|++++|++|+.|++|++||+.  +......+..|..++.++.|..   ...+++++.|+.|
T Consensus         2 ~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v   81 (379)
T 3jrp_A            2 SMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKV   81 (379)
T ss_dssp             ---CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred             CccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEE
Confidence            4456788999999999999999999999999999999998  5566677888999999999953   5788999999999


Q ss_pred             EEEEcCCCc--ceeeecCCCcceeEEEECCC--CCEEEEEeCCCcEEEEeCCCCc--eeeeecccCCCEEEEEEccCCCC
Q 008496          381 YVCKIGENR--PIKTFAGHQGEVNCVKWDPT--GSLLASCSDDVTAKIWNMKQDK--YVHDLREHSKEIYTIRWSPTGSG  454 (563)
Q Consensus       381 ~~~~~~~~~--~~~~~~~h~~~i~~~~~~~~--~~~las~s~dg~i~iwd~~~~~--~~~~~~~~~~~i~~~~~~p~~~~  454 (563)
                      ++|++....  .+..+.+|...|.+++|+|+  +.+|++++.|+.|++||+.+..  ....+..|...|.+++|+|....
T Consensus        82 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  161 (379)
T 3jrp_A           82 LIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIE  161 (379)
T ss_dssp             EEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC--
T ss_pred             EEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCcccc
Confidence            999998886  77888899999999999999  9999999999999999998773  34456789999999999994210


Q ss_pred             CCC----CCCcEEEEEEeCCCeEEEEeCCCCe----EEEEecCCCCCEEEEEEcCC---CCEEEEEeCCCcEEEEecCCC
Q 008496          455 TNN----PNQQLILASASFDSTVKLWDVELGK----LLYSLNGHREPVYSLAFSPT---GEYLASGSLDKSMHIWSLKEG  523 (563)
Q Consensus       455 ~~~----~~~~~~l~s~s~dg~i~iwd~~~~~----~~~~~~~h~~~i~~l~~spd---g~~lasgs~dg~v~iw~~~~~  523 (563)
                      ...    ..+..+|++|+.||.|++||++.+.    .+..+.+|..+|++++|+|+   +.+|++|+.||.|+|||+.++
T Consensus       162 ~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~  241 (379)
T 3jrp_A          162 EDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNE  241 (379)
T ss_dssp             --------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESST
T ss_pred             ccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCC
Confidence            000    0011278999999999999997653    55678899999999999999   899999999999999999887


Q ss_pred             e---eEEEEe---cCCCEEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496          524 K---IVKTYT---GNGGIFEVCWNKEGDKIAACFANHTVCVLDFR  562 (563)
Q Consensus       524 ~---~~~~~~---~~~~i~~l~w~~~g~~la~~~~~~~v~v~~~~  562 (563)
                      .   ....+.   ....|.+++|+|+|++|++++.||.|.||+++
T Consensus       242 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~  286 (379)
T 3jrp_A          242 QGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN  286 (379)
T ss_dssp             TSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEE
T ss_pred             CccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCC
Confidence            4   222222   34679999999999999999999999999986

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=100.00  E-value=2.9e-33  Score=279.63  Aligned_cols=272  Identities=15%  Similarity=0.230  Sum_probs=216.3

Q ss_pred             cCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEE-EEeeCCCcEEEEECCCCcee
Q 008496          272 EKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYL-LTGSCDKTAIVWDVKTEEWK  350 (563)
Q Consensus       272 ~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l-~s~s~D~~v~iwd~~~~~~~  350 (563)
                      .+...|++++|+|+|++|++|+.+| ++||+.+..... ...+...+..+.|.++++.+ ++++.|++|++||+.+++.+
T Consensus        17 ~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~   94 (355)
T 3vu4_A           17 HVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHI-MSQEMRHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDV   94 (355)
T ss_dssp             --CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEE-EEEECSCCCEEEECTTSSEEEEECSSTTEEEEEETTTTEEE
T ss_pred             cCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCccee-eeeecCCeEEEEEcCCCCEEEEEECCccEEEEEECCCCcEE
Confidence            4567899999999999999998775 789997754322 22222357788889888887 57888999999999999988


Q ss_pred             EEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCC-cceeeecCCCcceeEEEECCCCCEEEE--EeCCCcEEEEeC
Q 008496          351 QQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGEN-RPIKTFAGHQGEVNCVKWDPTGSLLAS--CSDDVTAKIWNM  427 (563)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~-~~~~~~~~h~~~i~~~~~~~~~~~las--~s~dg~i~iwd~  427 (563)
                      ..+. +..++.++.+..+..+++  .++.|++|++... +.+..+..   ....+++++  .+++.  |+.||.|++||+
T Consensus        95 ~~~~-~~~~v~~v~~~~~~~~~~--~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~--~~la~~sg~~~g~v~iwd~  166 (355)
T 3vu4_A           95 SRIK-VDAPVKDLFLSREFIVVS--YGDVISVFKFGNPWKRITDDIR---FGGVCEFSN--GLLVYSNEFNLGQIHITKL  166 (355)
T ss_dssp             EEEE-CSSCEEEEEECSSEEEEE--ETTEEEEEESSTTCCBSSCCEE---EEEEEEEET--TEEEEEESSCTTCEEEEEC
T ss_pred             EEEE-CCCceEEEEEcCCEEEEE--EcCEEEEEECCCCceeeEEecc---CCceEEEEc--cEEEEeCCCcCcEEEEEEC
Confidence            8776 455788888876654443  4789999999887 66666554   444556666  56665  688999999999


Q ss_pred             CCCc----------------eeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCe-EEEEeCCCCeEEEEec-C
Q 008496          428 KQDK----------------YVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDST-VKLWDVELGKLLYSLN-G  489 (563)
Q Consensus       428 ~~~~----------------~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~-i~iwd~~~~~~~~~~~-~  489 (563)
                      .++.                .+..+.+|...|++++|+|++.         +|++|+.||+ |+|||+++++++..+. +
T Consensus       167 ~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~---------~l~s~s~d~~~v~iwd~~~~~~~~~~~~g  237 (355)
T 3vu4_A          167 QSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSD---------MVATCSQDGTIIRVFKTEDGVLVREFRRG  237 (355)
T ss_dssp             CC------------------CCEEECCCSSCEEEEEECTTSS---------EEEEEETTCSEEEEEETTTCCEEEEEECT
T ss_pred             CCCCccccccccccccccCcccEEEEccCCceEEEEECCCCC---------EEEEEeCCCCEEEEEECCCCcEEEEEEcC
Confidence            8765                2677899999999999999885         8999999998 9999999999999998 5


Q ss_pred             -CCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEE--E------------------E--ec--CCCEEEEEEcCCC
Q 008496          490 -HREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVK--T------------------Y--TG--NGGIFEVCWNKEG  544 (563)
Q Consensus       490 -h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~--~------------------~--~~--~~~i~~l~w~~~g  544 (563)
                       |..+|++++|+|||++|++|+.|++|+|||+.++...+  .                  +  ..  ......++|+++|
T Consensus       238 ~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~  317 (355)
T 3vu4_A          238 LDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISES  317 (355)
T ss_dssp             TCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSS
T ss_pred             CCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCC
Confidence             99999999999999999999999999999997653111  0                  0  00  1123568999999


Q ss_pred             CEEEEEECCCeEEEEEee
Q 008496          545 DKIAACFANHTVCVLDFR  562 (563)
Q Consensus       545 ~~la~~~~~~~v~v~~~~  562 (563)
                      +.|+++..||.+.+|+++
T Consensus       318 ~~l~~~~~dg~~~~~~~~  335 (355)
T 3vu4_A          318 SLVVVWPHTRMIETFKVV  335 (355)
T ss_dssp             EEEEEETTTTEEEEEEEE
T ss_pred             CEEEEEeCCCeEEEEEEE
Confidence            999999999999999875

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=3.1e-35  Score=296.33  Aligned_cols=239  Identities=19%  Similarity=0.274  Sum_probs=198.9

Q ss_pred             CCCeEEEEECCCCCEEEEEeCCCeEEEEEcCC---ceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCcee
Q 008496          274 SKDVTTLDWNGEGTLLATGSYDGQARIWSTNG---DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWK  350 (563)
Q Consensus       274 ~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~---~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~  350 (563)
                      ...|++++|+|+|++|++|+.||.|++|+...   .....+.+|..+|++++|+|++++|++++.|++|++||+.++.. 
T Consensus        11 ~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~-   89 (377)
T 3dwl_C           11 PKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGT-   89 (377)
T ss_dssp             SSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------C-
T ss_pred             CCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCc-
Confidence            45799999999999999999999999999875   45667889999999999999999999999999999999876530 


Q ss_pred             EEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCC
Q 008496          351 QQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD  430 (563)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~  430 (563)
                                                           ..+...+.+|...|.+++|+|++++|++|+.|+.|++||++++
T Consensus        90 -------------------------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~  132 (377)
T 3dwl_C           90 -------------------------------------WKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQE  132 (377)
T ss_dssp             -------------------------------------CCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC---
T ss_pred             -------------------------------------eeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCc
Confidence                                                 1123456678999999999999999999999999999999987


Q ss_pred             c---eeeeecc-cCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCC------------------CCeEEEEec
Q 008496          431 K---YVHDLRE-HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVE------------------LGKLLYSLN  488 (563)
Q Consensus       431 ~---~~~~~~~-~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~------------------~~~~~~~~~  488 (563)
                      .   ....+.. |...|++++|+|++.         +|++++.|+.|++||+.                  .++++..+ 
T Consensus       133 ~~~~~~~~~~~~h~~~v~~~~~~~~~~---------~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  202 (377)
T 3dwl_C          133 NDWWVSKHLKRPLRSTILSLDWHPNNV---------LLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-  202 (377)
T ss_dssp             --CCCCEEECSSCCSCEEEEEECTTSS---------EEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-
T ss_pred             ccceeeeEeecccCCCeEEEEEcCCCC---------EEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-
Confidence            6   3667777 999999999999875         79999999999999985                  35667777 


Q ss_pred             CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCee----EEEEecC-CCEEEEEEcCCCCEEEEEECCCeEEEEEe
Q 008496          489 GHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKI----VKTYTGN-GGIFEVCWNKEGDKIAACFANHTVCVLDF  561 (563)
Q Consensus       489 ~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~----~~~~~~~-~~i~~l~w~~~g~~la~~~~~~~v~v~~~  561 (563)
                      +|..+|++++|+|+|++||+|+.||.|++||+.+++.    +..+..+ ..|.+++|+|+|++|++|+.++ +.+|+.
T Consensus       203 ~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~-~~~~~~  279 (377)
T 3dwl_C          203 PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYS-PILLQG  279 (377)
T ss_dssp             CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSS-EEEECC
T ss_pred             cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCc-EEEEEe
Confidence            8999999999999999999999999999999999876    5666554 4699999999999999987665 447764

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=1.4e-33  Score=284.98  Aligned_cols=253  Identities=20%  Similarity=0.292  Sum_probs=201.1

Q ss_pred             cCCCCceEEEEECC-CCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEE
Q 008496          212 EGHTSEVCACAWSP-AGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLA  290 (563)
Q Consensus       212 ~~h~~~V~~~~~sp-~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~  290 (563)
                      .+|...|.+++|+| ++.+|++|+.|+.|++||+.+..           .   ..... ...+...|++++|+|++++|+
T Consensus       115 ~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-----------~---~~~~~-~~~~~~~v~~~~~~~~~~~l~  179 (383)
T 3ei3_B          115 MGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSV-----------I---QVFAK-TDSWDYWYCCVDVSVSRQMLA  179 (383)
T ss_dssp             CSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSCE-----------E---EEEEC-CCCSSCCEEEEEEETTTTEEE
T ss_pred             CCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCc-----------e---EEEec-cCCCCCCeEEEEECCCCCEEE
Confidence            47999999999999 68999999999999999986421           1   11111 122346799999999999999


Q ss_pred             EEeCCCeEEEEEcCCceeEeeccCCCCEEEEEeCCCCC-EEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecCCCc
Q 008496          291 TGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGD-YLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNV  369 (563)
Q Consensus       291 sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~-~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  369 (563)
                      +|+.||.|++|+..+.....+..|...|.+++|+|++. +|++|+.|++|++||+++....                   
T Consensus       180 ~~~~d~~i~i~d~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~-------------------  240 (383)
T 3ei3_B          180 TGDSTGRLLLLGLDGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDK-------------------  240 (383)
T ss_dssp             EEETTSEEEEEETTSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCST-------------------
T ss_pred             EECCCCCEEEEECCCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcc-------------------
Confidence            99999999999999888889999999999999999999 8999999999999999764210                   


Q ss_pred             eEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECC-CCCEEEEEeCCCcEEEEeCCCCceeeeecccC-------C
Q 008496          370 SFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDP-TGSLLASCSDDVTAKIWNMKQDKYVHDLREHS-------K  441 (563)
Q Consensus       370 ~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~-~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~-------~  441 (563)
                                        ...+..+ +|...|.+++|+| ++++|++++.|+.|++||++++.....+..|.       .
T Consensus       241 ------------------~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  301 (383)
T 3ei3_B          241 ------------------NSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLT  301 (383)
T ss_dssp             ------------------TCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSC
T ss_pred             ------------------cceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccccccccccccccccc
Confidence                              1112223 5888999999999 99999999999999999999887766665443       2


Q ss_pred             CEEEEEEccCCCC---CCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecC--CCCCEEEEEEcCCCCEEEEEeCCCcEE
Q 008496          442 EIYTIRWSPTGSG---TNNPNQQLILASASFDSTVKLWDVELGKLLYSLNG--HREPVYSLAFSPTGEYLASGSLDKSMH  516 (563)
Q Consensus       442 ~i~~~~~~p~~~~---~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~--h~~~i~~l~~spdg~~lasgs~dg~v~  516 (563)
                      .+. +.|+|++..   ...|+.. +  +|+.||.|+|||+.+++++..+.+  |...+..++|+|+|++||+|+ ||.|+
T Consensus       302 ~~~-~~~~p~~~~~~~~~s~dg~-~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~  376 (383)
T 3ei3_B          302 PIK-ATWHPMYDLIVAGRYPDDQ-L--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNIL  376 (383)
T ss_dssp             CCC-CEECSSSSEEEEECBCCTT-T--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEE
T ss_pred             ceE-EeccCCCCceEEEecCCcc-c--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEE
Confidence            222 344443320   0011111 1  677999999999999999999987  457788889999999999998 99999


Q ss_pred             EEecCC
Q 008496          517 IWSLKE  522 (563)
Q Consensus       517 iw~~~~  522 (563)
                      ||++.+
T Consensus       377 iw~~~~  382 (383)
T 3ei3_B          377 IWNRED  382 (383)
T ss_dssp             EEECC-
T ss_pred             EEecCC
Confidence            999874

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=7.9e-34  Score=288.90  Aligned_cols=275  Identities=17%  Similarity=0.252  Sum_probs=233.1

Q ss_pred             eEEEEECCCCCEEE-EEeCCCeEEEEEcCCc-----eeEeeccCCCCEEEEEeCC-CCCEEEEeeCCCcEEEEECCCC--
Q 008496          277 VTTLDWNGEGTLLA-TGSYDGQARIWSTNGD-----LKCTLSKHKGPIFSLKWNK-KGDYLLTGSCDKTAIVWDVKTE--  347 (563)
Q Consensus       277 V~~l~~s~~g~~l~-sg~~dg~i~vw~~~~~-----~~~~~~~h~~~V~~l~~~~-~~~~l~s~s~D~~v~iwd~~~~--  347 (563)
                      ...++++|+...++ +|+.||.|+||+....     ....+.+|.++|++++|+| ++++|++|+.|++|++||+.++  
T Consensus        37 ~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~  116 (402)
T 2aq5_A           37 SGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGL  116 (402)
T ss_dssp             SCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCC
T ss_pred             CCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCC
Confidence            44578888765444 5789999999997542     3345788999999999999 9999999999999999999887  


Q ss_pred             -----ceeEEeeecccCeEEEecCCC--ceEEEEeCCCeEEEEEcCCCcceeee--cCCCcceeEEEECCCCCEEEEEeC
Q 008496          348 -----EWKQQFEFHSGPTLDVDWRNN--VSFATSSTDNMIYVCKIGENRPIKTF--AGHQGEVNCVKWDPTGSLLASCSD  418 (563)
Q Consensus       348 -----~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~d~~i~~~~~~~~~~~~~~--~~h~~~i~~~~~~~~~~~las~s~  418 (563)
                           .....+..|...+.++.|.++  ..+++++.|+.|++|++...+++..+  .+|.+.|.+++|+|++++|++++.
T Consensus       117 ~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  196 (402)
T 2aq5_A          117 VLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCR  196 (402)
T ss_dssp             SSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEET
T ss_pred             ccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEec
Confidence                 556778889999999999876  47899999999999999999999999  899999999999999999999999


Q ss_pred             CCcEEEEeCCCCceeeee-cccCCC-EEEEEEccCCCCCCCCCCcEEEEEE---eCCCeEEEEeCCCCeE-EEEe-cCCC
Q 008496          419 DVTAKIWNMKQDKYVHDL-REHSKE-IYTIRWSPTGSGTNNPNQQLILASA---SFDSTVKLWDVELGKL-LYSL-NGHR  491 (563)
Q Consensus       419 dg~i~iwd~~~~~~~~~~-~~~~~~-i~~~~~~p~~~~~~~~~~~~~l~s~---s~dg~i~iwd~~~~~~-~~~~-~~h~  491 (563)
                      |+.|++||+++++.+..+ ..|... +.++.|+|++.         +|++|   +.|+.|++||+++++. +... ..|.
T Consensus       197 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~  267 (402)
T 2aq5_A          197 DKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGK---------ILTTGFSRMSERQVALWDTKHLEEPLSLQELDTS  267 (402)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTE---------EEEEEECTTCCEEEEEEETTBCSSCSEEEECCCC
T ss_pred             CCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCc---------EEEEeccCCCCceEEEEcCccccCCceEEeccCC
Confidence            999999999999998888 678766 89999999864         78888   7899999999987654 2222 2467


Q ss_pred             CCEEEEEEcCCCCEEEE-EeCCCcEEEEecCCCe----eEEEEecCCCEEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496          492 EPVYSLAFSPTGEYLAS-GSLDKSMHIWSLKEGK----IVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLDFR  562 (563)
Q Consensus       492 ~~i~~l~~spdg~~las-gs~dg~v~iw~~~~~~----~~~~~~~~~~i~~l~w~~~g~~la~~~~~~~v~v~~~~  562 (563)
                      ..|.+++|+|++++|++ |+.||.|++|++.+++    .+..+.....|.+++|+|+|..+++  .++.+.+|++.
T Consensus       268 ~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~  341 (402)
T 2aq5_A          268 SGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEIARFYKLH  341 (402)
T ss_dssp             SSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEEEEEEEEE
T ss_pred             CceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--cceeEEEEEcC
Confidence            78999999999999975 5579999999999887    3344444578999999999998775  46689999874

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=2.6e-34  Score=296.40  Aligned_cols=275  Identities=20%  Similarity=0.384  Sum_probs=209.2

Q ss_pred             CCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCc------------eeEeeccCC------------CCEEEEEeCCCC-
Q 008496          273 KSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGD------------LKCTLSKHK------------GPIFSLKWNKKG-  327 (563)
Q Consensus       273 ~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~------------~~~~~~~h~------------~~V~~l~~~~~~-  327 (563)
                      +...|++++|+|+|++|++|+.||.|+||+....            ....+.+|.            .+|++++|+|++ 
T Consensus        27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~  106 (447)
T 3dw8_B           27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKN  106 (447)
T ss_dssp             GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCS
T ss_pred             ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCC
Confidence            3568999999999999999999999999997643            366788998            889999999998 


Q ss_pred             -CEEEEeeCCCcEEEEECCCCceeEEe-e--ecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeee-cCCCccee
Q 008496          328 -DYLLTGSCDKTAIVWDVKTEEWKQQF-E--FHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTF-AGHQGEVN  402 (563)
Q Consensus       328 -~~l~s~s~D~~v~iwd~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~-~~h~~~i~  402 (563)
                       .+|++++.|++|++||+.++...... .  .+.+............+......+    +.. ...+...+ .+|...|.
T Consensus       107 ~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~----~~~-~~~~~~~~~~~h~~~v~  181 (447)
T 3dw8_B          107 AAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMD----LMV-EASPRRIFANAHTYHIN  181 (447)
T ss_dssp             SSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEE----EEE-EEEEEEEECSCCSSCCC
T ss_pred             cceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchh----eee-eccceEEeccCCCcceE
Confidence             79999999999999998765433210 0  000000000000000000000000    000 11223343 68999999


Q ss_pred             EEEECCCCCEEEEEeCCCcEEEEeCCC-Cceee-------eecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEE
Q 008496          403 CVKWDPTGSLLASCSDDVTAKIWNMKQ-DKYVH-------DLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVK  474 (563)
Q Consensus       403 ~~~~~~~~~~las~s~dg~i~iwd~~~-~~~~~-------~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~  474 (563)
                      +++|+|++++|++| .|+.|++||+.+ ...+.       .+..|...|++++|+|++.        .+|++|+.||.|+
T Consensus       182 ~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~--------~~l~s~~~dg~i~  252 (447)
T 3dw8_B          182 SISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSC--------NTFVYSSSKGTIR  252 (447)
T ss_dssp             EEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCT--------TEEEEEETTSCEE
T ss_pred             EEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCC--------cEEEEEeCCCeEE
Confidence            99999999999999 899999999984 43433       3668999999999999872        1799999999999


Q ss_pred             EEeCCCCeE----EEEecCCCC------------CEEEEEEcCCCCEEEEEeCCCcEEEEecCC-CeeEEEEecCCC---
Q 008496          475 LWDVELGKL----LYSLNGHRE------------PVYSLAFSPTGEYLASGSLDKSMHIWSLKE-GKIVKTYTGNGG---  534 (563)
Q Consensus       475 iwd~~~~~~----~~~~~~h~~------------~i~~l~~spdg~~lasgs~dg~v~iw~~~~-~~~~~~~~~~~~---  534 (563)
                      +||+++++.    +..+.+|..            +|.+++|+|+|++|++|+. +.|+|||+++ ++++..+..+..   
T Consensus       253 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~  331 (447)
T 3dw8_B          253 LCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRS  331 (447)
T ss_dssp             EEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTT
T ss_pred             EEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccc
Confidence            999998886    678888876            8999999999999999999 9999999997 888877776543   


Q ss_pred             -------------EEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496          535 -------------IFEVCWNKEGDKIAACFANHTVCVLDFR  562 (563)
Q Consensus       535 -------------i~~l~w~~~g~~la~~~~~~~v~v~~~~  562 (563)
                                   ++.++|+|+|++|++|+.|+.|.|||++
T Consensus       332 ~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~  372 (447)
T 3dw8_B          332 KLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRN  372 (447)
T ss_dssp             THHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETT
T ss_pred             cccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcC
Confidence                         3449999999999999999999999975

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=3.3e-33  Score=279.74  Aligned_cols=276  Identities=19%  Similarity=0.333  Sum_probs=228.6

Q ss_pred             cCCCCeEEEEECCC---CCEEEEEeCCCeEEEEEcCC--cee-EeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECC
Q 008496          272 EKSKDVTTLDWNGE---GTLLATGSYDGQARIWSTNG--DLK-CTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVK  345 (563)
Q Consensus       272 ~~~~~V~~l~~s~~---g~~l~sg~~dg~i~vw~~~~--~~~-~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~  345 (563)
                      .|...|++++|+|+   |++|++|+.||.|++|+...  ... ..+.+|..+|++++|+|++++|++++.|++|++||+.
T Consensus        37 ~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~  116 (368)
T 3mmy_A           37 SPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLS  116 (368)
T ss_dssp             CCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred             CCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcC
Confidence            45678999999999   69999999999999999863  333 6788999999999999999999999999999999999


Q ss_pred             CCceeEEeeecccCeEEEec--CCC-ceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcE
Q 008496          346 TEEWKQQFEFHSGPTLDVDW--RNN-VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTA  422 (563)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i  422 (563)
                      ++.... +..|..++.++.|  ..+ ..+++++.|+.|++|++...+++..+..|. .+.++.+.  ...+++++.++.+
T Consensus       117 ~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~i  192 (368)
T 3mmy_A          117 SNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE-RCYCADVI--YPMAVVATAERGL  192 (368)
T ss_dssp             TTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS-CEEEEEEE--TTEEEEEEGGGCE
T ss_pred             CCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC-CceEEEec--CCeeEEEeCCCcE
Confidence            988766 5568889999998  544 568899999999999999999888888765 55566665  4578899999999


Q ss_pred             EEEeCCCCceeeee--cccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC---eEEEEecCCCC-----
Q 008496          423 KIWNMKQDKYVHDL--REHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG---KLLYSLNGHRE-----  492 (563)
Q Consensus       423 ~iwd~~~~~~~~~~--~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~---~~~~~~~~h~~-----  492 (563)
                      ++|++.........  ..+...+.++.+.+....     ....+++++.||.|++||++..   ..+..+.+|..     
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~  267 (368)
T 3mmy_A          193 IVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQN-----KPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNT  267 (368)
T ss_dssp             EEEECSSSCEEEEECCCSCSSCEEEEEEEECTTS-----CEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----
T ss_pred             EEEEeccccchhhhccccccCCCceEEEcccCCC-----CCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccc
Confidence            99999876543222  123344556665554321     1234899999999999999887   55677777766     


Q ss_pred             -------CEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEec-CCCEEEEEEcCCCCEEEEEECCCeE
Q 008496          493 -------PVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTG-NGGIFEVCWNKEGDKIAACFANHTV  556 (563)
Q Consensus       493 -------~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~-~~~i~~l~w~~~g~~la~~~~~~~v  556 (563)
                             +|++++|+|++++|++|+.||.|+|||+.+++++..+.. ...|.+++|+|+|++||+|+.++..
T Consensus       268 ~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~  339 (368)
T 3mmy_A          268 SAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWS  339 (368)
T ss_dssp             CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCCST
T ss_pred             cccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEeccccc
Confidence                   799999999999999999999999999999999988876 5679999999999999999988743

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=8.1e-33  Score=274.25  Aligned_cols=248  Identities=19%  Similarity=0.365  Sum_probs=215.6

Q ss_pred             EeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCC----ceeEEeeecccCeEEEecCC---CceEEEEeCCCeEE
Q 008496          309 CTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTE----EWKQQFEFHSGPTLDVDWRN---NVSFATSSTDNMIY  381 (563)
Q Consensus       309 ~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~----~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~d~~i~  381 (563)
                      ..+.+|.++|++++|+|++++|++|+.||+|++||+.++    .....+..|..++.++.|.+   ...+++++.|+.|+
T Consensus         5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~   84 (351)
T 3f3f_A            5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVK   84 (351)
T ss_dssp             CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred             ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEE
Confidence            456799999999999999999999999999999999876    45666778999999999976   67889999999999


Q ss_pred             EEEcCCC---------cceeeecCCCcceeEEEECCC--CCEEEEEeCCCcEEEEeCCCCceeeeec-------------
Q 008496          382 VCKIGEN---------RPIKTFAGHQGEVNCVKWDPT--GSLLASCSDDVTAKIWNMKQDKYVHDLR-------------  437 (563)
Q Consensus       382 ~~~~~~~---------~~~~~~~~h~~~i~~~~~~~~--~~~las~s~dg~i~iwd~~~~~~~~~~~-------------  437 (563)
                      +|++...         +++..+.+|.+.|.+++|+|+  +.+|++++.||.|++||+++++.+..+.             
T Consensus        85 vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~  164 (351)
T 3f3f_A           85 LWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPA  164 (351)
T ss_dssp             EEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCS
T ss_pred             EEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccC
Confidence            9999876         557888899999999999999  9999999999999999998877554332             


Q ss_pred             ccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeE--EEEecCCCCCEEEEEEcCCC----CEEEEEeC
Q 008496          438 EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKL--LYSLNGHREPVYSLAFSPTG----EYLASGSL  511 (563)
Q Consensus       438 ~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~--~~~~~~h~~~i~~l~~spdg----~~lasgs~  511 (563)
                      .|...+.++.|+|+...      ..++++++.|+.+.+|+...++.  +..+.+|..+|++++|+|++    ++|++|+.
T Consensus       165 ~~~~~~~~~~~~p~~~~------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~  238 (351)
T 3f3f_A          165 NHLQSDFCLSWCPSRFS------PEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCK  238 (351)
T ss_dssp             SCSCCCEEEEECCCSSS------CCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEET
T ss_pred             CcccceeEEEeccCCCC------CcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcC
Confidence            57788999999997211      12789999999999998887765  67788999999999999998    89999999


Q ss_pred             CCcEEEEecCCC----------------------------------------------eeEEEEec-CCCEEEEEEcCCC
Q 008496          512 DKSMHIWSLKEG----------------------------------------------KIVKTYTG-NGGIFEVCWNKEG  544 (563)
Q Consensus       512 dg~v~iw~~~~~----------------------------------------------~~~~~~~~-~~~i~~l~w~~~g  544 (563)
                      ||.|++||+.++                                              +++..+.+ ...|.+++|+|+|
T Consensus       239 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~  318 (351)
T 3f3f_A          239 DGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTG  318 (351)
T ss_dssp             TSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSS
T ss_pred             CCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCC
Confidence            999999999875                                              45555554 4579999999999


Q ss_pred             CEEEEEECCCeEEEEEee
Q 008496          545 DKIAACFANHTVCVLDFR  562 (563)
Q Consensus       545 ~~la~~~~~~~v~v~~~~  562 (563)
                      ++||+|+.|+.|.|||+.
T Consensus       319 ~~l~s~~~dg~v~iw~~~  336 (351)
T 3f3f_A          319 TILSSAGDDGKVRLWKAT  336 (351)
T ss_dssp             CCEEEEETTSCEEEEEEC
T ss_pred             CEEEEecCCCcEEEEecC
Confidence            999999999999999985

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=1.2e-33  Score=287.52  Aligned_cols=286  Identities=18%  Similarity=0.307  Sum_probs=234.3

Q ss_pred             ceEEEEECCCCC-EEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECC-CCCEEEEEeC
Q 008496          217 EVCACAWSPAGS-LLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG-EGTLLATGSY  294 (563)
Q Consensus       217 ~V~~~~~sp~~~-~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~-~g~~l~sg~~  294 (563)
                      ....|+++|+.. ++++|+.||.|+||++.......             ........|...|++++|+| ++++|++|+.
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~-------------~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~  102 (402)
T 2aq5_A           36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVD-------------KNVPLVCGHTAPVLDIAWCPHNDNVIASGSE  102 (402)
T ss_dssp             SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECC-------------TTCCCBCCCSSCEEEEEECTTCTTEEEEEET
T ss_pred             CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCC-------------CCCceEecCCCCEEEEEeCCCCCCEEEEEeC
Confidence            345689999865 55678999999999986432110             00011234567899999999 9999999999


Q ss_pred             CCeEEEEEcCC--------ceeEeeccCCCCEEEEEeCCCC-CEEEEeeCCCcEEEEECCCCceeEEe--eecccCeEEE
Q 008496          295 DGQARIWSTNG--------DLKCTLSKHKGPIFSLKWNKKG-DYLLTGSCDKTAIVWDVKTEEWKQQF--EFHSGPTLDV  363 (563)
Q Consensus       295 dg~i~vw~~~~--------~~~~~~~~h~~~V~~l~~~~~~-~~l~s~s~D~~v~iwd~~~~~~~~~~--~~~~~~~~~~  363 (563)
                      ||.|++|+...        .....+.+|...|.+++|+|++ ++|++++.|++|++||+.+++....+  ..|...+.++
T Consensus       103 dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~  182 (402)
T 2aq5_A          103 DCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSV  182 (402)
T ss_dssp             TSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEE
T ss_pred             CCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEE
Confidence            99999999764        3456788999999999999998 69999999999999999999988888  6788899999


Q ss_pred             ecCC-CceEEEEeCCCeEEEEEcCCCcceeee-cCCCcc-eeEEEECCCCCEEEEE---eCCCcEEEEeCCCCce-eeee
Q 008496          364 DWRN-NVSFATSSTDNMIYVCKIGENRPIKTF-AGHQGE-VNCVKWDPTGSLLASC---SDDVTAKIWNMKQDKY-VHDL  436 (563)
Q Consensus       364 ~~~~-~~~~~~~~~d~~i~~~~~~~~~~~~~~-~~h~~~-i~~~~~~~~~~~las~---s~dg~i~iwd~~~~~~-~~~~  436 (563)
                      .|.. ...+++++.|+.|++|++.....+..+ .+|.+. +.++.|+|++++|++|   +.|+.|++||+++... +...
T Consensus       183 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~  262 (402)
T 2aq5_A          183 DWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQ  262 (402)
T ss_dssp             EECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEE
T ss_pred             EECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEE
Confidence            9975 457889999999999999999988888 788876 8999999999999999   7999999999988654 2222


Q ss_pred             -cccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeE-EEEecC--CCCCEEEEEEcCCCCEEEEEeCC
Q 008496          437 -REHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKL-LYSLNG--HREPVYSLAFSPTGEYLASGSLD  512 (563)
Q Consensus       437 -~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~-~~~~~~--h~~~i~~l~~spdg~~lasgs~d  512 (563)
                       ..|...+.+++|+|++.        .++++|+.||.|++||+.+++. +..+..  |..+|.+++|+|++.++++  .+
T Consensus       263 ~~~~~~~v~~~~~s~~~~--------~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~  332 (402)
T 2aq5_A          263 ELDTSSGVLLPFFDPDTN--------IVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KC  332 (402)
T ss_dssp             ECCCCSSCEEEEEETTTT--------EEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GT
T ss_pred             eccCCCceeEEEEcCCCC--------EEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--cc
Confidence             24677899999999875        3445677899999999998773 334333  5689999999999999875  56


Q ss_pred             CcEEEEecCCCee
Q 008496          513 KSMHIWSLKEGKI  525 (563)
Q Consensus       513 g~v~iw~~~~~~~  525 (563)
                      +.+++|++.++++
T Consensus       333 ~~~~~~~l~~~~~  345 (402)
T 2aq5_A          333 EIARFYKLHERKC  345 (402)
T ss_dssp             EEEEEEEEETTEE
T ss_pred             eeEEEEEcCCCcE
Confidence            6999999988764

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=4.7e-33  Score=285.70  Aligned_cols=260  Identities=24%  Similarity=0.500  Sum_probs=214.5

Q ss_pred             eEecCCCCceEEEEECCC-CCEEEEeeCCCcEEEEecCCCCCcCCC--CCCCceEEEEEeeecccccCCCCeEEEEECCC
Q 008496          209 TILEGHTSEVCACAWSPA-GSLLASGSGDSTARIWTIADGTSNGGA--QNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE  285 (563)
Q Consensus       209 ~~l~~h~~~V~~~~~sp~-~~~latgs~D~~i~iW~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~  285 (563)
                      ..+.+|.+.|++++|+|+ +.+||+|+.||.|++|++.........  ...+.     ..+    ..+...|++++|+|+
T Consensus       122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~-----~~~----~~h~~~v~~l~~~~~  192 (430)
T 2xyi_A          122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPD-----LRL----RGHQKEGYGLSWNPN  192 (430)
T ss_dssp             EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCS-----EEE----ECCSSCCCCEEECTT
T ss_pred             EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCc-----EEe----cCCCCCeEEEEeCCC
Confidence            445689999999999997 789999999999999999753211110  01111     111    234567999999999


Q ss_pred             CC-EEEEEeCCCeEEEEEcCCc--------eeEeeccCCCCEEEEEeCC-CCCEEEEeeCCCcEEEEECCCCceeEEeee
Q 008496          286 GT-LLATGSYDGQARIWSTNGD--------LKCTLSKHKGPIFSLKWNK-KGDYLLTGSCDKTAIVWDVKTEEWKQQFEF  355 (563)
Q Consensus       286 g~-~l~sg~~dg~i~vw~~~~~--------~~~~~~~h~~~V~~l~~~~-~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~  355 (563)
                      +. +|++|+.||.|++|+....        ....+.+|...|.+++|+| ++..|++++.|+.|++||++++..      
T Consensus       193 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~------  266 (430)
T 2xyi_A          193 LNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNT------  266 (430)
T ss_dssp             STTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCS------
T ss_pred             CCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCC------
Confidence            98 9999999999999998651        1345678999999999999 678899999999999999986521      


Q ss_pred             cccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCC-EEEEEeCCCcEEEEeCCC-Ccee
Q 008496          356 HSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGS-LLASCSDDVTAKIWNMKQ-DKYV  433 (563)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~-~las~s~dg~i~iwd~~~-~~~~  433 (563)
                                                      .+++..+.+|...|++++|+|+++ +|++|+.||.|++||+++ ..++
T Consensus       267 --------------------------------~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~  314 (430)
T 2xyi_A          267 --------------------------------SKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKL  314 (430)
T ss_dssp             --------------------------------SSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCS
T ss_pred             --------------------------------CcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCe
Confidence                                            123345567889999999999987 689999999999999997 5667


Q ss_pred             eeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC--------------CeEEEEecCCCCCEEEEEE
Q 008496          434 HDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL--------------GKLLYSLNGHREPVYSLAF  499 (563)
Q Consensus       434 ~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~--------------~~~~~~~~~h~~~i~~l~~  499 (563)
                      ..+..|...|++++|+|++.        .+|++++.||.|+|||+..              .+++..+.+|...|++++|
T Consensus       315 ~~~~~h~~~v~~i~~sp~~~--------~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  386 (430)
T 2xyi_A          315 HSFESHKDEIFQVQWSPHNE--------TILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSW  386 (430)
T ss_dssp             EEEECCSSCEEEEEECSSCT--------TEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEE
T ss_pred             EEeecCCCCEEEEEECCCCC--------CEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEE
Confidence            88889999999999999874        2789999999999999986              3678888999999999999


Q ss_pred             cCCCC-EEEEEeCCCcEEEEecCCC
Q 008496          500 SPTGE-YLASGSLDKSMHIWSLKEG  523 (563)
Q Consensus       500 spdg~-~lasgs~dg~v~iw~~~~~  523 (563)
                      +|+++ +|++++.||.|+||++.+.
T Consensus       387 ~p~~~~~l~s~s~dg~i~iw~~~~~  411 (430)
T 2xyi_A          387 NPNEPWIICSVSEDNIMQVWQMAEN  411 (430)
T ss_dssp             CSSSTTEEEEEETTSEEEEEEECHH
T ss_pred             CCCCCCEEEEEECCCCEEEeEcccc
Confidence            99999 8999999999999998754

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.6e-34  Score=312.76  Aligned_cols=254  Identities=25%  Similarity=0.405  Sum_probs=208.8

Q ss_pred             eEecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCC--C
Q 008496          209 TILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE--G  286 (563)
Q Consensus       209 ~~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~--g  286 (563)
                      .++.+|.+.|++++|+|++++|++|+.||+|+||++.++..           .....+    ..|...|++++|+++  +
T Consensus         3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~-----------~~~~~l----~~h~~~V~~l~~s~~~~~   67 (753)
T 3jro_A            3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH-----------KLIDTL----TGHEGPVWRVDWAHPKFG   67 (753)
T ss_dssp             -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEE-----------EEEEEE----CCCSSCEEEEEECCTTSC
T ss_pred             eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCC-----------ccceec----cCCcCceEEEEecCCCCC
Confidence            46789999999999999999999999999999999863210           111222    245678999999988  9


Q ss_pred             CEEEEEeCCCeEEEEEcCCc---eeEeeccCCCCEEEEEeCCC--CCEEEEeeCCCcEEEEECCCCceeEEeeecccCeE
Q 008496          287 TLLATGSYDGQARIWSTNGD---LKCTLSKHKGPIFSLKWNKK--GDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTL  361 (563)
Q Consensus       287 ~~l~sg~~dg~i~vw~~~~~---~~~~~~~h~~~V~~l~~~~~--~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~  361 (563)
                      ++|++|+.||.|++|+....   ....+..|..+|++++|+|+  ++.|++|+.||+|++||++++...           
T Consensus        68 ~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~-----------  136 (753)
T 3jro_A           68 TILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTT-----------  136 (753)
T ss_dssp             SEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCC-----------
T ss_pred             CEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCc-----------
Confidence            99999999999999998654   55677889999999999999  999999999999999999765321           


Q ss_pred             EEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECC-------------CCCEEEEEeCCCcEEEEeCC
Q 008496          362 DVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDP-------------TGSLLASCSDDVTAKIWNMK  428 (563)
Q Consensus       362 ~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~-------------~~~~las~s~dg~i~iwd~~  428 (563)
                                                  ....+.+|...|.+++|+|             ++.+|++|+.||+|++||++
T Consensus       137 ----------------------------~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~  188 (753)
T 3jro_A          137 ----------------------------SPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYN  188 (753)
T ss_dssp             ----------------------------CCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEE
T ss_pred             ----------------------------ceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEecc
Confidence                                        1123456888899999999             58999999999999999998


Q ss_pred             CC----ceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCe-----EEEEecCCCCCEEEEEE
Q 008496          429 QD----KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK-----LLYSLNGHREPVYSLAF  499 (563)
Q Consensus       429 ~~----~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~-----~~~~~~~h~~~i~~l~~  499 (563)
                      ++    .....+..|...|++++|+|++.      ...+|++|+.||.|++||+.++.     .+.....|..+|++++|
T Consensus       189 ~~~~~~~~~~~~~~h~~~V~~l~~sp~~~------~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~  262 (753)
T 3jro_A          189 SDAQTYVLESTLEGHSDWVRDVAWSPTVL------LRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASW  262 (753)
T ss_dssp             TTTTEEEEEEEECCCSSCEEEEEECCCCS------SSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEE
T ss_pred             CCcccceeeeeecCCCCcEEEEEeccCCC------CCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEE
Confidence            76    45667889999999999999820      01379999999999999998764     33344568889999999


Q ss_pred             cCCCCEEEEEeCCCcEEEEecCC
Q 008496          500 SPTGEYLASGSLDKSMHIWSLKE  522 (563)
Q Consensus       500 spdg~~lasgs~dg~v~iw~~~~  522 (563)
                      +|+|++|++|+.||.|+||++..
T Consensus       263 spdg~~l~s~s~Dg~I~vwd~~~  285 (753)
T 3jro_A          263 SLSGNVLALSGGDNKVTLWKENL  285 (753)
T ss_dssp             CTTTCCEEEECSSSCEECCBCCS
T ss_pred             cCCCCEEEEEcCCCEEEEEecCC
Confidence            99999999999999999999874

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.8e-32  Score=272.04  Aligned_cols=240  Identities=21%  Similarity=0.350  Sum_probs=212.9

Q ss_pred             cCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcC-CceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCcee
Q 008496          272 EKSKDVTTLDWNGEGTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWK  350 (563)
Q Consensus       272 ~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~  350 (563)
                      .|...|++++|+|+|++|++|+.||.|++|+.. +.....+.+|..+|++++|+|++++|++++.|++|++||+.+++..
T Consensus        30 ~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  109 (369)
T 3zwl_B           30 GHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCV  109 (369)
T ss_dssp             CCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEE
T ss_pred             EeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEE
Confidence            356789999999999999999999999999965 5677788999999999999999999999999999999999876543


Q ss_pred             EEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCC-----CcEEEE
Q 008496          351 QQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDD-----VTAKIW  425 (563)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~d-----g~i~iw  425 (563)
                      ..                                         +. |...|.+++|+|++++|++++.+     +.|++|
T Consensus       110 ~~-----------------------------------------~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~  147 (369)
T 3zwl_B          110 AT-----------------------------------------WK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIY  147 (369)
T ss_dssp             EE-----------------------------------------EE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEE
T ss_pred             EE-----------------------------------------ee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEE
Confidence            32                                         22 55678899999999999999999     999999


Q ss_pred             eCCCCc-----------eeeeecccCC--CEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC-CeEEEEecCCC
Q 008496          426 NMKQDK-----------YVHDLREHSK--EIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL-GKLLYSLNGHR  491 (563)
Q Consensus       426 d~~~~~-----------~~~~~~~~~~--~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~-~~~~~~~~~h~  491 (563)
                      |+....           .+..+..|..  .+.+++|+|++.         +|++++.||.|++||+++ ++.+..+..|.
T Consensus       148 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  218 (369)
T 3zwl_B          148 EIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGK---------YIIAGHKDGKISKYDVSNNYEYVDSIDLHE  218 (369)
T ss_dssp             EEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGC---------EEEEEETTSEEEEEETTTTTEEEEEEECCS
T ss_pred             EecCCccceeecccccceeeeccCCcCccceeEEEEcCCCC---------EEEEEcCCCEEEEEECCCCcEeEEEEecCC
Confidence            987653           2334445555  899999999875         789999999999999998 78889999999


Q ss_pred             CCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEecCCCEEEEEEcCCCCEEEEEECCC--------------eEE
Q 008496          492 EPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANH--------------TVC  557 (563)
Q Consensus       492 ~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~~~~i~~l~w~~~g~~la~~~~~~--------------~v~  557 (563)
                      .+|.+++|+|++++|++++.||.|++||+.+++.+..+.....+..++|+|+|+.++++..++              .+.
T Consensus       219 ~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~  298 (369)
T 3zwl_B          219 KSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEAR  298 (369)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECCC-------------CEEE
T ss_pred             CceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeecCCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeE
Confidence            999999999999999999999999999999999999999888999999999999999999888              788


Q ss_pred             EEEee
Q 008496          558 VLDFR  562 (563)
Q Consensus       558 v~~~~  562 (563)
                      +||++
T Consensus       299 ~~d~~  303 (369)
T 3zwl_B          299 FYHKI  303 (369)
T ss_dssp             EEETT
T ss_pred             EEecC
Confidence            88764

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=100.00  E-value=4.1e-32  Score=278.83  Aligned_cols=277  Identities=13%  Similarity=0.109  Sum_probs=237.8

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCeEEEEEcC-CceeE-----eeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCc
Q 008496          275 KDVTTLDWNGEGTLLATGSYDGQARIWSTN-GDLKC-----TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEE  348 (563)
Q Consensus       275 ~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~-~~~~~-----~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~  348 (563)
                      ..+.+++|+|++.++++++.++.|++|+.. +....     .+.+|.+.|.+++|+|++..+++++.|+.|++||+.+++
T Consensus       123 ~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~  202 (433)
T 3bws_A          123 FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLA  202 (433)
T ss_dssp             SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCC
T ss_pred             CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCce
Confidence            346689999988888888889999999987 44444     345789999999999999999999999999999999999


Q ss_pred             eeEEeeecccCeEEEecCCCc--eEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEe--------C
Q 008496          349 WKQQFEFHSGPTLDVDWRNNV--SFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCS--------D  418 (563)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s--------~  418 (563)
                      ....+..+...+..+.|.++.  .+++++.++.|++|++...+.+..+..+ ..+.+++|+|++++|++++        .
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~~~~~~~  281 (433)
T 3bws_A          203 YKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKI-GLPRGLLLSKDGKELYIAQFSASNQESG  281 (433)
T ss_dssp             EEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCC-SEEEEEEECTTSSEEEEEEEESCTTCSC
T ss_pred             EEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCC-CCceEEEEcCCCCEEEEEECCCCccccC
Confidence            888888888888888887543  3456668999999999988888777664 4589999999999999888        5


Q ss_pred             CCcEEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEE
Q 008496          419 DVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLA  498 (563)
Q Consensus       419 dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~  498 (563)
                      |+.|++||+.+++.+..+ .|...+.+++|+|++.        .++++++.|+.|++||+.+++.+..+. +...+.+++
T Consensus       282 dg~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~--------~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~  351 (433)
T 3bws_A          282 GGRLGIYSMDKEKLIDTI-GPPGNKRHIVSGNTEN--------KIYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIA  351 (433)
T ss_dssp             CEEEEEEETTTTEEEEEE-EEEECEEEEEECSSTT--------EEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEE
T ss_pred             CCeEEEEECCCCcEEeec-cCCCCcceEEECCCCC--------EEEEEecCCCEEEEEECCCCcEEEEec-CCCCCCeEE
Confidence            899999999988776654 4566889999999874        467888999999999999999888776 667899999


Q ss_pred             EcCCCCEEEEEeC---------------CCcEEEEecCCCeeEEEEecCCCEEEEEEcCCCCEEEEEEC-CCeEEEEEee
Q 008496          499 FSPTGEYLASGSL---------------DKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFA-NHTVCVLDFR  562 (563)
Q Consensus       499 ~spdg~~lasgs~---------------dg~v~iw~~~~~~~~~~~~~~~~i~~l~w~~~g~~la~~~~-~~~v~v~~~~  562 (563)
                      |+|+|++|++++.               ||.|++||+.+++++..+.....+..++|+|+|+.|+++.. ++.|.||++.
T Consensus       352 ~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~  431 (433)
T 3bws_A          352 LSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAGNQPTGLDVSPDNRYLVISDFLDHQIRVYRRD  431 (433)
T ss_dssp             ECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECSSSEEEEEECTTSCEEEEEETTTTEEEEEEET
T ss_pred             EcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCCCCCceEEEcCCCCEEEEEECCCCeEEEEEec
Confidence            9999999988876               57999999999999999988888999999999999998875 9999999975

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.2e-34  Score=282.70  Aligned_cols=263  Identities=10%  Similarity=0.061  Sum_probs=204.2

Q ss_pred             EECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEEeCCCeEEEE
Q 008496          222 AWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIW  301 (563)
Q Consensus       222 ~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw  301 (563)
                      .+.+++.+|++|+.||+|++||+.++....          .+.         ...|.++.|+|+   +++|+.|+.|++|
T Consensus        43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~----------~~~---------~~~v~~~~~~~~---~~s~s~D~~i~~w  100 (343)
T 3lrv_A           43 SMYYDKWVCMCRCEDGALHFTQLKDSKTIT----------TIT---------TPNPRTGGEHPA---IISRGPCNRLLLL  100 (343)
T ss_dssp             SSSEEEEEEEEEEETTEEEEEEESSSSCEE----------EEE---------EECCCTTCCCCS---EEEECSTTEEEEE
T ss_pred             hhcCCCCEEEEECCCCcEEEEECCCCcEEE----------EEe---------cCCceeeeeCCc---eEEecCCCeEEEE
Confidence            455688899999999999999998654311          111         134677788888   9999999999999


Q ss_pred             EcCCce----------eE-eeccCCCCEEEEEeCC--CCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecCCC
Q 008496          302 STNGDL----------KC-TLSKHKGPIFSLKWNK--KGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNN  368 (563)
Q Consensus       302 ~~~~~~----------~~-~~~~h~~~V~~l~~~~--~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  368 (563)
                      +..+..          .. ....|.++|.+++|+|  ++++|++|+.|++|++||+++++....+               
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~---------------  165 (343)
T 3lrv_A          101 YPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVH---------------  165 (343)
T ss_dssp             ETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEE---------------
T ss_pred             EccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEE---------------
Confidence            876432          22 2236778999999999  9999999999999999999877542211               


Q ss_pred             ceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCcee-eeecc-cCCCEEEE
Q 008496          369 VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYV-HDLRE-HSKEIYTI  446 (563)
Q Consensus       369 ~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~-~~~~~-~~~~i~~~  446 (563)
                                               ...|...|++++|+|++.+||+|+.||.|++||+++++.+ ..+.. |...|+++
T Consensus       166 -------------------------~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l  220 (343)
T 3lrv_A          166 -------------------------SAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEV  220 (343)
T ss_dssp             -------------------------CCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEE
T ss_pred             -------------------------ecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEE
Confidence                                     0124556899999999999999999999999999999887 77887 99999999


Q ss_pred             EEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecC---CCCCEE--EEEEcCCCCEEEEEeC-CCcEEEEec
Q 008496          447 RWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNG---HREPVY--SLAFSPTGEYLASGSL-DKSMHIWSL  520 (563)
Q Consensus       447 ~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~---h~~~i~--~l~~spdg~~lasgs~-dg~v~iw~~  520 (563)
                      +|+|++.         +|++++ |+.|++||+++++.+..+..   |..++.  +++|+|+|++|++|+. |+.|+||++
T Consensus       221 ~fs~~g~---------~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~  290 (343)
T 3lrv_A          221 KFADNGY---------WMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKF  290 (343)
T ss_dssp             EECTTSS---------EEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             EEeCCCC---------EEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEE
Confidence            9999875         788888 55999999998876554443   444444  6999999999999998 999999999


Q ss_pred             CCCeeEEEEecCCCEEEEEEcC---CCCEEEEEECCCeEEEE
Q 008496          521 KEGKIVKTYTGNGGIFEVCWNK---EGDKIAACFANHTVCVL  559 (563)
Q Consensus       521 ~~~~~~~~~~~~~~i~~l~w~~---~g~~la~~~~~~~v~v~  559 (563)
                      .++......   ..+..++|++   +++.|++++.|+.+.++
T Consensus       291 ~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~  329 (343)
T 3lrv_A          291 DKKTKNWTK---DEESALCLQSDTADFTDMDVVCGDGGIAAI  329 (343)
T ss_dssp             CTTTCSEEE---EEEEECCC----CCCCEEEEEEETTEEEEE
T ss_pred             cccccceEe---cCceeEecCccccccceeEEEecCCceEEE
Confidence            765432222   4467788988   88899988888888765

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=2.3e-33  Score=280.82  Aligned_cols=266  Identities=20%  Similarity=0.332  Sum_probs=210.4

Q ss_pred             CCCceEEEEECCC----CCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECC-CCCE
Q 008496          214 HTSEVCACAWSPA----GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG-EGTL  288 (563)
Q Consensus       214 h~~~V~~~~~sp~----~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~-~g~~  288 (563)
                      |...|++++|+|+    +.+|++|+.||.|++|++.++..             +..+    ..+...|++++|+| ++.+
T Consensus        68 ~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~-------------~~~~----~~~~~~i~~~~~~~~~~~~  130 (366)
T 3k26_A           68 ADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQC-------------IKHY----VGHGNAINELKFHPRDPNL  130 (366)
T ss_dssp             TTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCE-------------EEEE----ESCCSCEEEEEECSSCTTE
T ss_pred             CCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceE-------------eeee----cCCCCcEEEEEECCCCCCE
Confidence            6688999999999    67999999999999999876431             1112    23467899999999 9999


Q ss_pred             EEEEeCCCeEEEEEcC-CceeEee---ccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEe
Q 008496          289 LATGSYDGQARIWSTN-GDLKCTL---SKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVD  364 (563)
Q Consensus       289 l~sg~~dg~i~vw~~~-~~~~~~~---~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~  364 (563)
                      |++|+.||.|++|+.. +.....+   ..|...|.+++|+|++++|++++.|+.|++||+++++....+....      .
T Consensus       131 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~------~  204 (366)
T 3k26_A          131 LLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESY------D  204 (366)
T ss_dssp             EEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHH------T
T ss_pred             EEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeE------E
Confidence            9999999999999986 4455555   6899999999999999999999999999999998876544332210      0


Q ss_pred             cCCCce-EEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCce-----------
Q 008496          365 WRNNVS-FATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKY-----------  432 (563)
Q Consensus       365 ~~~~~~-~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~-----------  432 (563)
                      +..+.. +....    .   . ..........+|...|.+++|+  +++|++++.|+.|++||+.+...           
T Consensus       205 ~~~~~~~~~~~~----~---~-~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~  274 (366)
T 3k26_A          205 YNPNKTNRPFIS----Q---K-IHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESN  274 (366)
T ss_dssp             CCGGGCSSCCCC----E---E-ECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCC
T ss_pred             ecCCCCcccccc----e---e-eccCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcc
Confidence            100000 00000    0   0 0112234556799999999998  77999999999999999887643           


Q ss_pred             ---eeeecccCCCEEEEEEccC--CCCCCCCCCcEEEEEEeCCCeEEEEeCCCCe----EEEEecCC--CCCEEEEEEcC
Q 008496          433 ---VHDLREHSKEIYTIRWSPT--GSGTNNPNQQLILASASFDSTVKLWDVELGK----LLYSLNGH--REPVYSLAFSP  501 (563)
Q Consensus       433 ---~~~~~~~~~~i~~~~~~p~--~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~----~~~~~~~h--~~~i~~l~~sp  501 (563)
                         +..+..|...|++++|+|+  +.         +|++|+.||.|++||+..++    ....+.+|  ..+|++++|+|
T Consensus       275 ~~~~~~~~~~~~~v~~~~~s~~~~~~---------~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  345 (366)
T 3k26_A          275 VTILGRFDYSQCDIWYMRFSMDFWQK---------MLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSR  345 (366)
T ss_dssp             EEEEEEEECSSCCSSCCCCEECTTSS---------EEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECT
T ss_pred             hheeccccccCCcEEEEEEcCCCCCc---------EEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCC
Confidence               6677788889999999998  54         79999999999999999875    45577777  78999999999


Q ss_pred             CCCEEEEEeCCCcEEEEecC
Q 008496          502 TGEYLASGSLDKSMHIWSLK  521 (563)
Q Consensus       502 dg~~lasgs~dg~v~iw~~~  521 (563)
                      ++++|++|+.||.|+|||+.
T Consensus       346 ~~~~l~s~~~dg~i~iwd~~  365 (366)
T 3k26_A          346 DSSILIAVCDDASIWRWDRL  365 (366)
T ss_dssp             TSSEEEEEETTSEEEEEEC-
T ss_pred             CCCeEEEEeCCCEEEEEEec
Confidence            99999999999999999985

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=100.00  E-value=9.2e-33  Score=275.94  Aligned_cols=277  Identities=12%  Similarity=0.151  Sum_probs=210.2

Q ss_pred             eEecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCE
Q 008496          209 TILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTL  288 (563)
Q Consensus       209 ~~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~  288 (563)
                      ..+.+|...|++++|+|+|++||+|+.|+ ++||++..+..           .....        ...+..++|.++++.
T Consensus        13 ~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~-----------~~~~~--------~~~~~~~~~~~~~~~   72 (355)
T 3vu4_A           13 VPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAH-----------IMSQE--------MRHLSKVRMLHRTNY   72 (355)
T ss_dssp             ------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEE-----------EEEEE--------CSCCCEEEECTTSSE
T ss_pred             cccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcce-----------eeeee--------cCCeEEEEEcCCCCE
Confidence            34578999999999999999999998775 78999764221           11111        124778889998887


Q ss_pred             E-EEEeCCCeEEEEEcC-CceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCC-ceeEEeeecccCeEEEec
Q 008496          289 L-ATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTE-EWKQQFEFHSGPTLDVDW  365 (563)
Q Consensus       289 l-~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~-~~~~~~~~~~~~~~~~~~  365 (563)
                      + ++|+.|+.|++||.. +.....+. |..+|.+++|+++.  ++++ .|+.|++||+.++ +.+..+.. ...+..+.+
T Consensus        73 ~~~~~~~d~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~-~~~~~~~s~  147 (355)
T 3vu4_A           73 VAFVTGVKEVVHIWDDVKKQDVSRIK-VDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDIR-FGGVCEFSN  147 (355)
T ss_dssp             EEEECSSTTEEEEEETTTTEEEEEEE-CSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCEE-EEEEEEEET
T ss_pred             EEEEECCccEEEEEECCCCcEEEEEE-CCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEecc-CCceEEEEc
Confidence            7 567888999999975 45555554 67799999999864  4433 4889999999887 55555544 222333443


Q ss_pred             CCCceEEE--EeCCCeEEEEEcCCCc---------------c-eeeecCCCcceeEEEECCCCCEEEEEeCCCc-EEEEe
Q 008496          366 RNNVSFAT--SSTDNMIYVCKIGENR---------------P-IKTFAGHQGEVNCVKWDPTGSLLASCSDDVT-AKIWN  426 (563)
Q Consensus       366 ~~~~~~~~--~~~d~~i~~~~~~~~~---------------~-~~~~~~h~~~i~~~~~~~~~~~las~s~dg~-i~iwd  426 (563)
                         ..++.  ++.++.|++|++....               | +..+.+|.+.|++++|+|++++||+|+.|++ |+|||
T Consensus       148 ---~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd  224 (355)
T 3vu4_A          148 ---GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFK  224 (355)
T ss_dssp             ---TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEE
T ss_pred             ---cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEE
Confidence               34444  5789999999998754               3 7889999999999999999999999999998 99999


Q ss_pred             CCCCceeeeec-c-cCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeE--EEEec--------------
Q 008496          427 MKQDKYVHDLR-E-HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKL--LYSLN--------------  488 (563)
Q Consensus       427 ~~~~~~~~~~~-~-~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~--~~~~~--------------  488 (563)
                      +++++++..+. + |...|++++|+|++.         +|++++.|++|+|||++.+..  ...+.              
T Consensus       225 ~~~~~~~~~~~~g~h~~~v~~~~~s~~~~---------~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (355)
T 3vu4_A          225 TEDGVLVREFRRGLDRADVVDMKWSTDGS---------KLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSL  295 (355)
T ss_dssp             TTTCCEEEEEECTTCCSCEEEEEECTTSC---------EEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCS
T ss_pred             CCCCcEEEEEEcCCCCCcEEEEEECCCCC---------EEEEEECCCEEEEEEccCCCCcccccccceeeccccccccce
Confidence            99999999998 5 999999999999885         799999999999999975421  11111              


Q ss_pred             -------CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCC
Q 008496          489 -------GHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKE  522 (563)
Q Consensus       489 -------~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~  522 (563)
                             .+..+...++|+|||++|++++.||.+++|++..
T Consensus       296 ~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~  336 (355)
T 3vu4_A          296 CNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVF  336 (355)
T ss_dssp             EEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEE
T ss_pred             eEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEc
Confidence                   1122346799999999999999999999999754

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=2.3e-32  Score=280.60  Aligned_cols=246  Identities=24%  Similarity=0.448  Sum_probs=213.7

Q ss_pred             EeeccCCCCEEEEEeCCC-CCEEEEeeCCCcEEEEECCC----------CceeEEeeecccCeEEEecCCCc--eEEEEe
Q 008496          309 CTLSKHKGPIFSLKWNKK-GDYLLTGSCDKTAIVWDVKT----------EEWKQQFEFHSGPTLDVDWRNNV--SFATSS  375 (563)
Q Consensus       309 ~~~~~h~~~V~~l~~~~~-~~~l~s~s~D~~v~iwd~~~----------~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~  375 (563)
                      .....|.++|++++|+|+ +.+|++++.||.|++||+.+          ......+..|...+.++.|....  .+++++
T Consensus       122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~  201 (430)
T 2xyi_A          122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS  201 (430)
T ss_dssp             EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred             EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence            345679999999999997 67899999999999999976          56667788899999999997653  689999


Q ss_pred             CCCeEEEEEcCCCc-------ceeeecCCCcceeEEEECC-CCCEEEEEeCCCcEEEEeCCCC---ceeeeecccCCCEE
Q 008496          376 TDNMIYVCKIGENR-------PIKTFAGHQGEVNCVKWDP-TGSLLASCSDDVTAKIWNMKQD---KYVHDLREHSKEIY  444 (563)
Q Consensus       376 ~d~~i~~~~~~~~~-------~~~~~~~h~~~i~~~~~~~-~~~~las~s~dg~i~iwd~~~~---~~~~~~~~~~~~i~  444 (563)
                      .|+.|++|++....       +...+.+|...|.+++|+| ++.+|++|+.|+.|++||+++.   ..+..+..|...|.
T Consensus       202 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~  281 (430)
T 2xyi_A          202 DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVN  281 (430)
T ss_dssp             TTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEE
T ss_pred             CCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeE
Confidence            99999999998732       2466779999999999999 6789999999999999999977   56777889999999


Q ss_pred             EEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC-CeEEEEecCCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEecCC
Q 008496          445 TIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL-GKLLYSLNGHREPVYSLAFSPTGE-YLASGSLDKSMHIWSLKE  522 (563)
Q Consensus       445 ~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~-~~~~~~~~~h~~~i~~l~~spdg~-~lasgs~dg~v~iw~~~~  522 (563)
                      +++|+|++.        .+|++|+.||.|++||++. +..+..+.+|..+|++++|+|+++ +|++|+.||.|+|||+..
T Consensus       282 ~i~~~p~~~--------~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~  353 (430)
T 2xyi_A          282 CLSFNPYSE--------FILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK  353 (430)
T ss_dssp             EEEECSSCT--------TEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGG
T ss_pred             EEEeCCCCC--------CEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCC
Confidence            999999764        3789999999999999997 567888889999999999999995 699999999999999986


Q ss_pred             --------------CeeEEEEecC-CCEEEEEEcCCCC-EEEEEECCCeEEEEEee
Q 008496          523 --------------GKIVKTYTGN-GGIFEVCWNKEGD-KIAACFANHTVCVLDFR  562 (563)
Q Consensus       523 --------------~~~~~~~~~~-~~i~~l~w~~~g~-~la~~~~~~~v~v~~~~  562 (563)
                                    ..++..+.++ ..|.+++|+|+++ .|++++.|+.|.||+++
T Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~  409 (430)
T 2xyi_A          354 IGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMA  409 (430)
T ss_dssp             TTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEEC
T ss_pred             CccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcc
Confidence                          2556666554 4699999999999 89999999999999985

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.3e-33  Score=303.11  Aligned_cols=251  Identities=25%  Similarity=0.432  Sum_probs=209.4

Q ss_pred             cCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcC---CceeEeeccCCCCEEEEEeCCC--CCEEEEeeCCCcEEEEECCC
Q 008496          272 EKSKDVTTLDWNGEGTLLATGSYDGQARIWSTN---GDLKCTLSKHKGPIFSLKWNKK--GDYLLTGSCDKTAIVWDVKT  346 (563)
Q Consensus       272 ~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~---~~~~~~~~~h~~~V~~l~~~~~--~~~l~s~s~D~~v~iwd~~~  346 (563)
                      .|...|++++|+|+|++|++|+.||.|+||+..   +.....+.+|.++|++++|+|+  +++|++|+.||+|++||+.+
T Consensus         7 gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~   86 (753)
T 3jro_A            7 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEEN   86 (753)
T ss_dssp             -CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEET
T ss_pred             cCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCC
Confidence            457889999999999999999999999999975   3455678899999999999988  99999999999999999876


Q ss_pred             CceeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCC--CCEEEEEeCCCcEEE
Q 008496          347 EEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT--GSLLASCSDDVTAKI  424 (563)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~--~~~las~s~dg~i~i  424 (563)
                      +...                                       .+..+.+|...|.+++|+|+  ++++++|+.||.|++
T Consensus        87 ~~~~---------------------------------------~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~v  127 (753)
T 3jro_A           87 GRWS---------------------------------------QIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSV  127 (753)
T ss_dssp             TEEE---------------------------------------EEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEE
T ss_pred             Cccc---------------------------------------ccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEE
Confidence            5321                                       23445678999999999999  999999999999999


Q ss_pred             EeCCCCc--eeeeecccCCCEEEEEEccCCCCC-----CCCCCcEEEEEEeCCCeEEEEeCCCC----eEEEEecCCCCC
Q 008496          425 WNMKQDK--YVHDLREHSKEIYTIRWSPTGSGT-----NNPNQQLILASASFDSTVKLWDVELG----KLLYSLNGHREP  493 (563)
Q Consensus       425 wd~~~~~--~~~~~~~~~~~i~~~~~~p~~~~~-----~~~~~~~~l~s~s~dg~i~iwd~~~~----~~~~~~~~h~~~  493 (563)
                      ||++++.  ....+..|...|.++.|+|.....     ..+ +..+|++|+.||.|++||++++    .++..+.+|..+
T Consensus       128 wdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~-d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~  206 (753)
T 3jro_A          128 VEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTK-ESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDW  206 (753)
T ss_dssp             EECCSSSCCCCEEEECCSSCEEEEEECCCC---------CG-GGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSC
T ss_pred             EEeecCCCcceeEeecCCCceEEEEecCcccccccccccCC-CCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCc
Confidence            9998773  345567899999999999952100     000 1126899999999999999876    667788899999


Q ss_pred             EEEEEEcCC---CCEEEEEeCCCcEEEEecCCCee-----E-EEEecCCCEEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496          494 VYSLAFSPT---GEYLASGSLDKSMHIWSLKEGKI-----V-KTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLDFR  562 (563)
Q Consensus       494 i~~l~~spd---g~~lasgs~dg~v~iw~~~~~~~-----~-~~~~~~~~i~~l~w~~~g~~la~~~~~~~v~v~~~~  562 (563)
                      |++++|+|+   +.+|++|+.||.|++||+.++..     + ......+.|++++|+|+|+.|++|+.||.|.|||++
T Consensus       207 V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~  284 (753)
T 3jro_A          207 VRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN  284 (753)
T ss_dssp             EEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCC
T ss_pred             EEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecC
Confidence            999999999   99999999999999999988631     1 111234568899999999999999999999999975

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=100.00  E-value=1.6e-32  Score=278.16  Aligned_cols=242  Identities=14%  Similarity=0.124  Sum_probs=180.5

Q ss_pred             EEEEECCCCCEEEEEeCCCeEEEEEcCCce------eEeeccCCCCEEEEEeCC--------CCCEEEEeeCCCcEEEEE
Q 008496          278 TTLDWNGEGTLLATGSYDGQARIWSTNGDL------KCTLSKHKGPIFSLKWNK--------KGDYLLTGSCDKTAIVWD  343 (563)
Q Consensus       278 ~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~------~~~~~~h~~~V~~l~~~~--------~~~~l~s~s~D~~v~iwd  343 (563)
                      ....+++++.+|++|+.|++|+||+.....      ...+.+|.+.|.+++|+|        ++++|+||+.|++|+|||
T Consensus        93 ~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd  172 (393)
T 4gq1_A           93 NVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWR  172 (393)
T ss_dssp             ----CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEE
T ss_pred             ceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEE
Confidence            334445567889999999999999976532      234679999999999998        789999999999999999


Q ss_pred             CCCCceeEEeeecccCeEEEecCCC--ceEEEEeCCCeEEEEEcCCCccee-------------------------eecC
Q 008496          344 VKTEEWKQQFEFHSGPTLDVDWRNN--VSFATSSTDNMIYVCKIGENRPIK-------------------------TFAG  396 (563)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~d~~i~~~~~~~~~~~~-------------------------~~~~  396 (563)
                      +.++.....+..|..++.++.|.++  ..+++++.|++|++|++...+...                         ...+
T Consensus       173 ~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~  252 (393)
T 4gq1_A          173 LTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSG  252 (393)
T ss_dssp             EETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------C
T ss_pred             CCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeeccc
Confidence            9988888888888899999999765  368999999999999997654322                         1246


Q ss_pred             CCcceeEEEEC-CCCCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEEEEEccCCCC-----------CCCCCCcEEE
Q 008496          397 HQGEVNCVKWD-PTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSG-----------TNNPNQQLIL  464 (563)
Q Consensus       397 h~~~i~~~~~~-~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~-----------~~~~~~~~~l  464 (563)
                      |...+.++.|+ |+++.|++++.|+++++||+..+.....+..|...+..+.+.|+...           ...+....++
T Consensus       253 ~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (393)
T 4gq1_A          253 IASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFA  332 (393)
T ss_dssp             CSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEE
T ss_pred             ccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEE
Confidence            77889999986 89999999999999999999988877777777777777766665321           0112345678


Q ss_pred             EEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEec
Q 008496          465 ASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSL  520 (563)
Q Consensus       465 ~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~  520 (563)
                      ++|+.||+|+|||+.+++++..+.+|..+|.+++|||||++||+++.+| +.+|.+
T Consensus       333 ~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~G-v~lvrL  387 (393)
T 4gq1_A          333 TAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGS-VLLTRL  387 (393)
T ss_dssp             EEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSE-EEEEEE
T ss_pred             EEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEE
Confidence            8999999999999999988888888999999999999999999999877 556654

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.7e-33  Score=282.74  Aligned_cols=258  Identities=14%  Similarity=0.084  Sum_probs=211.6

Q ss_pred             CCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEe
Q 008496          274 SKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQF  353 (563)
Q Consensus       274 ~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~  353 (563)
                      ...|.+++|+|||+++|+++.|++|+  +  +.....+.+|...|++++|+|+|       .++++.+|+....... .+
T Consensus        15 ~~~v~sv~~SpDG~~iASas~D~TV~--d--~~~~~~l~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~~~~~-~~   82 (588)
T 2j04_A           15 EDWKNNLTWARDGTLYLTTFPDISIG--Q--PKYAKDINCNSKNLFHVKEFPLE-------FENKLDFELAQQNGLL-NS   82 (588)
T ss_dssp             SSSSCCEEECTTSCEEEECSSSEEEE--E--ECCCSCCSSBGGGTEEEEEECCC-------CCCTTTTSCCCSSCSS-TT
T ss_pred             hccEEEEEECCCCCEEEEEcCCceee--c--ccccceecCCCccEEEEEECCCC-------CcceEEEEeCCCceEe-ec
Confidence            46799999999999999999999999  5  44444568999999999999999       5777777765433222 11


Q ss_pred             eecccCeEEEecCCC-ceEEEEeCCCeEEEEEcCCCcceeeecCCCc-----ceeEEEECCCCCEEEEEeCCCcEEEEeC
Q 008496          354 EFHSGPTLDVDWRNN-VSFATSSTDNMIYVCKIGENRPIKTFAGHQG-----EVNCVKWDPTGSLLASCSDDVTAKIWNM  427 (563)
Q Consensus       354 ~~~~~~~~~~~~~~~-~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~-----~i~~~~~~~~~~~las~s~dg~i~iwd~  427 (563)
                       .+...+.++.|.++ ..+|+++.||.+++|+...  .+..+. |..     .+.+++|||||++||+|+.||+|+|||+
T Consensus        83 -~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~  158 (588)
T 2j04_A           83 -QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSI  158 (588)
T ss_dssp             -SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEEC
T ss_pred             -CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEEC
Confidence             33677999999765 4589999999999999544  556666 665     4999999999999999999999999999


Q ss_pred             CCCce-------eeee----cccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeE---EEEe-cCCCC
Q 008496          428 KQDKY-------VHDL----REHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKL---LYSL-NGHRE  492 (563)
Q Consensus       428 ~~~~~-------~~~~----~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~---~~~~-~~h~~  492 (563)
                      .++..       +.++    .+|...|.+++|+|+|           +++++.|++|++||+..+..   ..++ .+|..
T Consensus       159 ~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg-----------Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~  227 (588)
T 2j04_A          159 RKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV-----------LVAALSNNSVFSMTVSASSHQPVSRMIQNASRR  227 (588)
T ss_dssp             CCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE-----------EEEEETTCCEEEECCCSSSSCCCEEEEECCCSS
T ss_pred             CCCccccccceeeeeeecccccccccEEEEEEcCCc-----------EEEEeCCCeEEEEECCCCccccceeeecccccC
Confidence            98753       5665    5677899999999963           67889999999999987763   3566 47889


Q ss_pred             CEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeE-EEEecCCCEEEEEE--cCCCCEEEEEECCCeEEEEEee
Q 008496          493 PVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIV-KTYTGNGGIFEVCW--NKEGDKIAACFANHTVCVLDFR  562 (563)
Q Consensus       493 ~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~-~~~~~~~~i~~l~w--~~~g~~la~~~~~~~v~v~~~~  562 (563)
                      .|.+++|+  |++||+++ +++|++||+.+++.. ..+.....+++++|  +|+|+.|++++.+|+ .||.++
T Consensus       228 ~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d  296 (588)
T 2j04_A          228 KITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED  296 (588)
T ss_dssp             CCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS
T ss_pred             cEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec
Confidence            99999999  68999997 699999999988873 33344567899999  999999999999999 898763

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.98  E-value=1.8e-31  Score=265.47  Aligned_cols=235  Identities=9%  Similarity=0.055  Sum_probs=192.8

Q ss_pred             EECCCCCEEEEEeCCCeEEEEEcC-CceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccC
Q 008496          281 DWNGEGTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGP  359 (563)
Q Consensus       281 ~~s~~g~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~  359 (563)
                      .+.+++.+|++|+.||.|++|+.. +.....+.  ..+|.++.|+|.   +++++.|++|++|+...             
T Consensus        43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~-------------  104 (343)
T 3lrv_A           43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGN-------------  104 (343)
T ss_dssp             SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTT-------------
T ss_pred             hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccC-------------
Confidence            345678899999999999999975 44444554  567888889998   99999999999999754             


Q ss_pred             eEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeec-CCCcceeEEEECC--CCCEEEEEeCCCcEEEEeCCCCceeeee
Q 008496          360 TLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFA-GHQGEVNCVKWDP--TGSLLASCSDDVTAKIWNMKQDKYVHDL  436 (563)
Q Consensus       360 ~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~-~h~~~i~~~~~~~--~~~~las~s~dg~i~iwd~~~~~~~~~~  436 (563)
                                         .+.+|+......+..+. +|.+.|.+++|+|  ++++|++|+.||+|++||+++++.+..+
T Consensus       105 -------------------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~  165 (343)
T 3lrv_A          105 -------------------QITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVH  165 (343)
T ss_dssp             -------------------EEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEE
T ss_pred             -------------------ceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEE
Confidence                               24456666655444444 7788999999999  9999999999999999999999886655


Q ss_pred             c-ccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEE-EEecC-CCCCEEEEEEcCCCCEEEEEeCCC
Q 008496          437 R-EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLL-YSLNG-HREPVYSLAFSPTGEYLASGSLDK  513 (563)
Q Consensus       437 ~-~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~-~~~~~-h~~~i~~l~~spdg~~lasgs~dg  513 (563)
                      . .|...+.+++|+|++.         +|++|+.||.|+|||+++++.+ ..+.. |..+|++++|+|+|.+|++|+ |+
T Consensus       166 ~~~~~~~i~~~~~~pdg~---------~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~  235 (343)
T 3lrv_A          166 SAKSDVEYSSGVLHKDSL---------LLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQ  235 (343)
T ss_dssp             CCCSSCCCCEEEECTTSC---------EEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SS
T ss_pred             ecCCCCceEEEEECCCCC---------EEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CC
Confidence            3 3455899999999875         8999999999999999999887 78887 999999999999999999999 55


Q ss_pred             cEEEEecCCCeeEEEEec---C-CCE--EEEEEcCCCCEEEEEEC-CCeEEEEEee
Q 008496          514 SMHIWSLKEGKIVKTYTG---N-GGI--FEVCWNKEGDKIAACFA-NHTVCVLDFR  562 (563)
Q Consensus       514 ~v~iw~~~~~~~~~~~~~---~-~~i--~~l~w~~~g~~la~~~~-~~~v~v~~~~  562 (563)
                      .|++||+++++.+..+..   + ..+  ..++|+|+|++||+|+. ++.+.||++.
T Consensus       236 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~  291 (343)
T 3lrv_A          236 TVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFD  291 (343)
T ss_dssp             BEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             eEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEc
Confidence            999999998876544332   1 112  36999999999999988 9999999874

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.98  E-value=3.9e-30  Score=265.67  Aligned_cols=237  Identities=14%  Similarity=0.126  Sum_probs=199.3

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCeEEEEEcC-Cc---eeEeec--------------------------------------
Q 008496          275 KDVTTLDWNGEGTLLATGSYDGQARIWSTN-GD---LKCTLS--------------------------------------  312 (563)
Q Consensus       275 ~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~-~~---~~~~~~--------------------------------------  312 (563)
                      .++++++|+++|++|+++ .++.|++|+.. |.   ....+.                                      
T Consensus         5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (450)
T 2vdu_B            5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS   83 (450)
T ss_dssp             CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred             ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence            468899999999966655 57899999954 44   333332                                      


Q ss_pred             ----------------cCCCCEEEEEeCCCCCEE-EEeeCCCcEEEEECC--CCceeEEeeecccCeEEEecCCCceEEE
Q 008496          313 ----------------KHKGPIFSLKWNKKGDYL-LTGSCDKTAIVWDVK--TEEWKQQFEFHSGPTLDVDWRNNVSFAT  373 (563)
Q Consensus       313 ----------------~h~~~V~~l~~~~~~~~l-~s~s~D~~v~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (563)
                                      .|.+.|++++|+|++++| ++|+.|++|++||+.  ++.....+..                  
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~------------------  145 (450)
T 2vdu_B           84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKR------------------  145 (450)
T ss_dssp             ----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEE------------------
T ss_pred             ccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeec------------------
Confidence                            344479999999999996 889999999999987  5544332211                  


Q ss_pred             EeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceee----eecccCCCEEEEEEc
Q 008496          374 SSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVH----DLREHSKEIYTIRWS  449 (563)
Q Consensus       374 ~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~----~~~~~~~~i~~~~~~  449 (563)
                                           .+|...|++++|+|++++|++|+.||.+++|++.+.....    .+.+|...|++++|+
T Consensus       146 ---------------------~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s  204 (450)
T 2vdu_B          146 ---------------------FCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLI  204 (450)
T ss_dssp             ---------------------EECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEE
T ss_pred             ---------------------ccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEc
Confidence                                 1356789999999999999999999999999998776544    778899999999999


Q ss_pred             cC---CCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEE-ecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCee
Q 008496          450 PT---GSGTNNPNQQLILASASFDSTVKLWDVELGKLLYS-LNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKI  525 (563)
Q Consensus       450 p~---~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~-~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~  525 (563)
                      |+   +.         +|++|+.|+.|++||+.+++++.. +.+|..+|++++|+ +|++|++|+.|+.|++||+.++++
T Consensus       205 p~~~~~~---------~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~  274 (450)
T 2vdu_B          205 KDSDGHQ---------FIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKN  274 (450)
T ss_dssp             ECTTSCE---------EEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCE
T ss_pred             CCCCCCc---------EEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcE
Confidence            98   53         799999999999999999988877 66899999999999 999999999999999999999998


Q ss_pred             EEEEec--------------------------CCCEEEEEEcCCCCEEEEEE-CCCeEEEEEe
Q 008496          526 VKTYTG--------------------------NGGIFEVCWNKEGDKIAACF-ANHTVCVLDF  561 (563)
Q Consensus       526 ~~~~~~--------------------------~~~i~~l~w~~~g~~la~~~-~~~~v~v~~~  561 (563)
                      +..+..                          ...|..++|+|+|+.|++++ .++.|.||++
T Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~  337 (450)
T 2vdu_B          275 LSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEM  337 (450)
T ss_dssp             EEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEE
T ss_pred             eeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEe
Confidence            888752                          23588999999999999998 8999999998

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.98  E-value=1.4e-28  Score=248.80  Aligned_cols=273  Identities=12%  Similarity=0.138  Sum_probs=219.7

Q ss_pred             CEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEE-EEEeCCCeEEEEEcC-C
Q 008496          228 SLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLL-ATGSYDGQARIWSTN-G  305 (563)
Q Consensus       228 ~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l-~sg~~dg~i~vw~~~-~  305 (563)
                      .++++++.|+.|++||+.++..             +.....     ...+.+++|+|+|+++ ++++.|+.|++|+.. +
T Consensus         3 ~l~vs~~~d~~v~v~d~~~~~~-------------~~~~~~-----~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~   64 (391)
T 1l0q_A            3 FAYIANSESDNISVIDVTSNKV-------------TATIPV-----GSNPMGAVISPDGTKVYVANAHSNDVSIIDTATN   64 (391)
T ss_dssp             EEEEEETTTTEEEEEETTTTEE-------------EEEEEC-----SSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTT
T ss_pred             EEEEEcCCCCEEEEEECCCCeE-------------EEEeec-----CCCcceEEECCCCCEEEEECCCCCeEEEEECCCC
Confidence            4688899999999999876531             111111     2458999999999976 677799999999975 4


Q ss_pred             ceeEeeccCCCCEEEEEeCCCCCEEE-EeeCCCcEEEEECCCCceeEEeeecccCeEEEecCCCc--eEEEEeCCCeEEE
Q 008496          306 DLKCTLSKHKGPIFSLKWNKKGDYLL-TGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNV--SFATSSTDNMIYV  382 (563)
Q Consensus       306 ~~~~~~~~h~~~V~~l~~~~~~~~l~-s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~i~~  382 (563)
                      +....+..+. .+.+++|+|++++|+ +++.|+.|++||+.+++....+..+. .+..+.|..+.  .+++++.++.|++
T Consensus        65 ~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~v~~  142 (391)
T 1l0q_A           65 NVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGK-SPLGLALSPDGKKLYVTNNGDKTVSV  142 (391)
T ss_dssp             EEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred             eEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCC-CcceEEECCCCCEEEEEeCCCCEEEE
Confidence            5555555544 899999999999885 45567999999999998877766543 56788887554  3467788999999


Q ss_pred             EEcCCCcceeeecCCCcceeEEEECCCCCEE-EEEeCCCcEEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCc
Q 008496          383 CKIGENRPIKTFAGHQGEVNCVKWDPTGSLL-ASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQ  461 (563)
Q Consensus       383 ~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l-as~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~  461 (563)
                      |++.+.+.+..+..|. .+.+++|+|+++.| ++++.|+.|++||+++++.+..+. +...+.+++|+|++.        
T Consensus       143 ~d~~~~~~~~~~~~~~-~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~--------  212 (391)
T 1l0q_A          143 INTVTKAVINTVSVGR-SPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK-VEAAPSGIAVNPEGT--------  212 (391)
T ss_dssp             EETTTTEEEEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CSSEEEEEEECTTSS--------
T ss_pred             EECCCCcEEEEEecCC-CcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe-cCCCccceEECCCCC--------
Confidence            9999988888887654 56899999999877 677889999999999988776665 456789999999875        


Q ss_pred             EEEEEEe---CCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEE-EEEeCCCcEEEEecCCCeeEEEEecC
Q 008496          462 LILASAS---FDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYL-ASGSLDKSMHIWSLKEGKIVKTYTGN  532 (563)
Q Consensus       462 ~~l~s~s---~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l-asgs~dg~v~iw~~~~~~~~~~~~~~  532 (563)
                       .|++++   .++.|++||+.+++.+..+..|. .+.+++|+|+|++| ++++.|+.|++||+.+++++..+..+
T Consensus       213 -~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~  285 (391)
T 1l0q_A          213 -KAYVTNVDKYFNTVSMIDTGTNKITARIPVGP-DPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMAVG  285 (391)
T ss_dssp             -EEEEEEECSSCCEEEEEETTTTEEEEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS
T ss_pred             -EEEEEecCcCCCcEEEEECCCCeEEEEEecCC-CccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEECC
Confidence             455555   79999999999999988888765 47899999999987 67788999999999999998887643

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.98  E-value=1.2e-29  Score=243.08  Aligned_cols=274  Identities=14%  Similarity=0.132  Sum_probs=189.4

Q ss_pred             CCeEEEEECCCCC---EEEEEeCCCeEEEEEcC-C---ceeEeeccCCCCEEEEEeCCCCCEEEE---------------
Q 008496          275 KDVTTLDWNGEGT---LLATGSYDGQARIWSTN-G---DLKCTLSKHKGPIFSLKWNKKGDYLLT---------------  332 (563)
Q Consensus       275 ~~V~~l~~s~~g~---~l~sg~~dg~i~vw~~~-~---~~~~~~~~h~~~V~~l~~~~~~~~l~s---------------  332 (563)
                      -+|.++-|-..|-   .+++++. ..|++|+.. +   ++.+++..|..+|..+.+.|+...|+.               
T Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~-~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla  118 (356)
T 2w18_A           40 VDVSAMFWERAGCKEPCIITACE-DVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALF  118 (356)
T ss_dssp             EEEEEEEEC----CEEEEEEEES-SEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEEC
T ss_pred             EEEeeeeeccCCCCccEEEEecc-ceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEE
Confidence            4577888877654   5666664 699999975 3   456778888887777777764322221               


Q ss_pred             -eeCCCcEEEEECCCCceeEEeeecccCeEEEecCCCceEEEEe---CCCeEEEEEcCC-CcceeeecCCCcceeEEEEC
Q 008496          333 -GSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSS---TDNMIYVCKIGE-NRPIKTFAGHQGEVNCVKWD  407 (563)
Q Consensus       333 -~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~d~~i~~~~~~~-~~~~~~~~~h~~~i~~~~~~  407 (563)
                       +..|+++..|.+..+        +...+..+   ....++.++   .|+.|++|++.. ++.+..+.+|...++.++|+
T Consensus       119 ~spd~~~~~~~l~s~g--------~~~~v~~l---~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs  187 (356)
T 2w18_A          119 CSSDDESEKQVLLKSG--------NIKAVLGL---TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFA  187 (356)
T ss_dssp             C------CCEEEEEEE--------EEEEEEEE---TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEE
T ss_pred             ECCCccccccEEEeCC--------CeEEEEec---CCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEee
Confidence             111111111111111        11111111   233444443   489999999954 66777888999999999999


Q ss_pred             C---CCCEEEEEeCCCcEEEEeCCCCceeeeecccC---CCEEEEEEccCCCCC---CCCCCcEEEEEEeCCCeEEEEeC
Q 008496          408 P---TGSLLASCSDDVTAKIWNMKQDKYVHDLREHS---KEIYTIRWSPTGSGT---NNPNQQLILASASFDSTVKLWDV  478 (563)
Q Consensus       408 ~---~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~---~~i~~~~~~p~~~~~---~~~~~~~~l~s~s~dg~i~iwd~  478 (563)
                      |   ++.+||+||.|++|||||++++++++++.+|.   ..+.+++|+|++...   ..+.....+++|+.|++|++||.
T Consensus       188 ~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~  267 (356)
T 2w18_A          188 EVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINP  267 (356)
T ss_dssp             EEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEET
T ss_pred             ccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEEC
Confidence            9   78999999999999999999999999998654   357778999987411   01111123588999999999999


Q ss_pred             CCCeEEEEe-----cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEecCC-CE-EEEEEcCCCCEEEEEE
Q 008496          479 ELGKLLYSL-----NGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNG-GI-FEVCWNKEGDKIAACF  551 (563)
Q Consensus       479 ~~~~~~~~~-----~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~~~-~i-~~l~w~~~g~~la~~~  551 (563)
                      .+++++..+     .+|...+.+..++  +.++|+|+.|++|+|||+.+|+++.++.++. .+ ..++|+|||++||+|+
T Consensus       268 ~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS  345 (356)
T 2w18_A          268 KTTLSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQ  345 (356)
T ss_dssp             TTTEEEEEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEEC
T ss_pred             CCCEEEEEEEeeccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEE
Confidence            999987765     4777666555554  8899999999999999999999999998653 34 4689999999999999


Q ss_pred             CCCeEEEEEee
Q 008496          552 ANHTVCVLDFR  562 (563)
Q Consensus       552 ~~~~v~v~~~~  562 (563)
                      .|++|+|||+.
T Consensus       346 ~D~TIklWd~~  356 (356)
T 2w18_A          346 KDGNIFVYHYS  356 (356)
T ss_dssp             TTSCEEEEEEC
T ss_pred             CCCcEEEecCC
Confidence            99999999974

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.97  E-value=1.2e-28  Score=249.33  Aligned_cols=263  Identities=13%  Similarity=0.112  Sum_probs=221.7

Q ss_pred             CEEEEEeCCCeEEEEEcC-CceeEeeccCCCCEEEEEeCCCCCEE-EEeeCCCcEEEEECCCCceeEEeeecccCeEEEe
Q 008496          287 TLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYL-LTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVD  364 (563)
Q Consensus       287 ~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l-~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~  364 (563)
                      .++++++.|+.|++|+.. ++....+..|. .+.+++|+|+++++ ++++.|++|++||+.+++....+..+. .+..+.
T Consensus         3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~   80 (391)
T 1l0q_A            3 FAYIANSESDNISVIDVTSNKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVA   80 (391)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEE
T ss_pred             EEEEEcCCCCEEEEEECCCCeEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceE
Confidence            468889999999999986 45555666664 58999999999987 677799999999999999888777655 778888


Q ss_pred             cCCCce-E-EEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEE-EEEeCCCcEEEEeCCCCceeeeecccCC
Q 008496          365 WRNNVS-F-ATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLL-ASCSDDVTAKIWNMKQDKYVHDLREHSK  441 (563)
Q Consensus       365 ~~~~~~-~-~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l-as~s~dg~i~iwd~~~~~~~~~~~~~~~  441 (563)
                      |.++.. + ++++.++.|++|++...+.+..+..| ..+.+++|+|+++.| ++++.|+.|++||+.+++.+..+..+ .
T Consensus        81 ~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~  158 (391)
T 1l0q_A           81 VSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-R  158 (391)
T ss_dssp             ECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-S
T ss_pred             ECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC-C
Confidence            876543 3 55667799999999998888777755 468999999999977 78888999999999999888777665 4


Q ss_pred             CEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEe---CCCcEEEE
Q 008496          442 EIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGS---LDKSMHIW  518 (563)
Q Consensus       442 ~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs---~dg~v~iw  518 (563)
                      .+.+++|+|++.        .++++++.|+.|++||+++++.+..+. +...+.+++|+|+|++|++++   .++.|++|
T Consensus       159 ~~~~~~~~~dg~--------~l~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~  229 (391)
T 1l0q_A          159 SPKGIAVTPDGT--------KVYVANFDSMSISVIDTVTNSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMI  229 (391)
T ss_dssp             SEEEEEECTTSS--------EEEEEETTTTEEEEEETTTTEEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEE
T ss_pred             CcceEEECCCCC--------EEEEEeCCCCEEEEEECCCCeEEEEEe-cCCCccceEECCCCCEEEEEecCcCCCcEEEE
Confidence            569999999875        355788899999999999999887776 456789999999999999888   68999999


Q ss_pred             ecCCCeeEEEEecCCCEEEEEEcCCCCEE-EEEECCCeEEEEEee
Q 008496          519 SLKEGKIVKTYTGNGGIFEVCWNKEGDKI-AACFANHTVCVLDFR  562 (563)
Q Consensus       519 ~~~~~~~~~~~~~~~~i~~l~w~~~g~~l-a~~~~~~~v~v~~~~  562 (563)
                      |+.+++.+..+..+..+..++|+|+|++| +++..++.|.|||++
T Consensus       230 d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~  274 (391)
T 1l0q_A          230 DTGTNKITARIPVGPDPAGIAVTPDGKKVYVALSFXNTVSVIDTA  274 (391)
T ss_dssp             ETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred             ECCCCeEEEEEecCCCccEEEEccCCCEEEEEcCCCCEEEEEECC
Confidence            99999999998888889999999999988 455779999999974

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.97  E-value=3.1e-30  Score=261.38  Aligned_cols=276  Identities=14%  Similarity=0.159  Sum_probs=191.7

Q ss_pred             CeEEEEEC---CCCCEEEEEeCCCeEEEEEcCCc-------e---eEeeccCCCCEEEEEeC------------------
Q 008496          276 DVTTLDWN---GEGTLLATGSYDGQARIWSTNGD-------L---KCTLSKHKGPIFSLKWN------------------  324 (563)
Q Consensus       276 ~V~~l~~s---~~g~~l~sg~~dg~i~vw~~~~~-------~---~~~~~~h~~~V~~l~~~------------------  324 (563)
                      ...++.|.   +++..++.++.++.|++|+....       .   ......|..++..+.|+                  
T Consensus        17 ~p~~~~w~~~~~~~~~l~a~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (393)
T 4gq1_A           17 RPYTTTWCSQSPSCSNLLAIGHDTGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSSCSYSENLHDGDGNVNS   96 (393)
T ss_dssp             CEEEEEECTTSGGGTTEEEEEESSEEEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEECTTCEEECC----------
T ss_pred             CCeEEEEeCCCCCCCCEEEEECCCCEEEEECCCCCcccccccceeeeEEEecCCCeeeEeecCCccccccccCCCcceee
Confidence            45667774   34444455556888999974211       0   01112234444444443                  


Q ss_pred             --CCCCEEEEeeCCCcEEEEECCCCceeE-----EeeecccCeEEEecC---------CCceEEEEeCCCeEEEEEcCCC
Q 008496          325 --KKGDYLLTGSCDKTAIVWDVKTEEWKQ-----QFEFHSGPTLDVDWR---------NNVSFATSSTDNMIYVCKIGEN  388 (563)
Q Consensus       325 --~~~~~l~s~s~D~~v~iwd~~~~~~~~-----~~~~~~~~~~~~~~~---------~~~~~~~~~~d~~i~~~~~~~~  388 (563)
                        +++.+|++++.|++|+|||++++....     .+..|.+.+.++.|.         +...+++++.|++|++|++...
T Consensus        97 ~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~  176 (393)
T 4gq1_A           97 SPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDE  176 (393)
T ss_dssp             CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETT
T ss_pred             cCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCC
Confidence              455679999999999999998886543     245688999999996         3467899999999999999988


Q ss_pred             cceeeecCCCcceeEEEECCCCC-EEEEEeCCCcEEEEeCCCCceeeee-------------------------cccCCC
Q 008496          389 RPIKTFAGHQGEVNCVKWDPTGS-LLASCSDDVTAKIWNMKQDKYVHDL-------------------------REHSKE  442 (563)
Q Consensus       389 ~~~~~~~~h~~~i~~~~~~~~~~-~las~s~dg~i~iwd~~~~~~~~~~-------------------------~~~~~~  442 (563)
                      .++..+.+|...+.+++|+|++. +|++|+.|++|++||+++++.....                         .+|...
T Consensus       177 ~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~  256 (393)
T 4gq1_A          177 GPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASS  256 (393)
T ss_dssp             EEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSS
T ss_pred             ceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeeccccccc
Confidence            88888889999999999999874 7999999999999999876543221                         346667


Q ss_pred             EEEEEEc-cCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcC--------------------
Q 008496          443 IYTIRWS-PTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSP--------------------  501 (563)
Q Consensus       443 i~~~~~~-p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp--------------------  501 (563)
                      +.++.|. |++.         .|++++.|+++++||+..++....+..|...+..+.++|                    
T Consensus       257 v~~v~~~~~dg~---------~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (393)
T 4gq1_A          257 LANVRWIGSDGS---------GILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRY  327 (393)
T ss_dssp             CSEEEEETTTTC---------EEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSC
T ss_pred             ceeeeeecCCCC---------EEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCC
Confidence            7788876 5553         689999999999999998877776666655554444333                    


Q ss_pred             CCCEEEEEeCCCcEEEEecCCCeeEEEE-ecCCCEEEEEEcCCCCEEEEEECCCeEEEEEe
Q 008496          502 TGEYLASGSLDKSMHIWSLKEGKIVKTY-TGNGGIFEVCWNKEGDKIAACFANHTVCVLDF  561 (563)
Q Consensus       502 dg~~lasgs~dg~v~iw~~~~~~~~~~~-~~~~~i~~l~w~~~g~~la~~~~~~~v~v~~~  561 (563)
                      ++.++++|+.||.|+|||+.+++.+... .....|.+++|+|||++||+++.+| +.+|.+
T Consensus       328 ~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~G-v~lvrL  387 (393)
T 4gq1_A          328 MDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGS-VLLTRL  387 (393)
T ss_dssp             TTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSE-EEEEEE
T ss_pred             CCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEE
Confidence            3456788999999999999998776554 4456799999999999999998765 555543

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.97  E-value=5.3e-30  Score=245.40  Aligned_cols=187  Identities=17%  Similarity=0.198  Sum_probs=140.9

Q ss_pred             CCCEEEEEe--CCCeEEEEEc--CCceeEeeccCCCCEEEEEeCC---CCCEEEEeeCCCcEEEEECCCCceeEEeeecc
Q 008496          285 EGTLLATGS--YDGQARIWST--NGDLKCTLSKHKGPIFSLKWNK---KGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHS  357 (563)
Q Consensus       285 ~g~~l~sg~--~dg~i~vw~~--~~~~~~~~~~h~~~V~~l~~~~---~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~  357 (563)
                      +|+++.+++  .|+.|++|+.  +|+.+..+..|...+..++|++   ++..|++|+.|++|+|||+.+++++.++..+.
T Consensus       144 ~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~  223 (356)
T 2w18_A          144 KRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDD  223 (356)
T ss_dssp             TTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC
T ss_pred             CCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCC
Confidence            455555543  5889999986  3566777888999999999999   77999999999999999999988777664322


Q ss_pred             cCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEE------------EEEeCCCcEEEE
Q 008496          358 GPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLL------------ASCSDDVTAKIW  425 (563)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l------------as~s~dg~i~iw  425 (563)
                      .                                      |...+.+++|+|+|+++            ++|+.|++|++|
T Consensus       224 ~--------------------------------------~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklW  265 (356)
T 2w18_A          224 S--------------------------------------YQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVI  265 (356)
T ss_dssp             -----------------------------------------CCCEEEEEEETTEEEEEEC------------CCEEEEEE
T ss_pred             c--------------------------------------ceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEE
Confidence            1                                      11234455666666554            788999999999


Q ss_pred             eCCCCceeeee-----cccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEE-EEEE
Q 008496          426 NMKQDKYVHDL-----REHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVY-SLAF  499 (563)
Q Consensus       426 d~~~~~~~~~~-----~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~-~l~~  499 (563)
                      |..+++.+..+     .+|...+.+..++  +.         ++++|+.|++|+|||+.+++++.++.+|...+. +++|
T Consensus       266 d~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~---------~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vaf  334 (356)
T 2w18_A          266 NPKTTLSVGVMLYCLPPGQAGRFLEGDVK--DH---------CAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKW  334 (356)
T ss_dssp             ETTTTEEEEEEEECCCTTCCCCEEEEEEE--TT---------EEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEE
T ss_pred             ECCCCEEEEEEEeeccCCCcceeEccccC--CC---------EEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEE
Confidence            99999877554     2455444444433  21         689999999999999999999999999987655 5899


Q ss_pred             cCCCCEEEEEeCCCcEEEEec
Q 008496          500 SPTGEYLASGSLDKSMHIWSL  520 (563)
Q Consensus       500 spdg~~lasgs~dg~v~iw~~  520 (563)
                      ||||++||+|+.|++|+|||+
T Consensus       335 SPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          335 SGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             CSSSSEEEEECTTSCEEEEEE
T ss_pred             CCCCCEEEEEECCCcEEEecC
Confidence            999999999999999999985

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.97  E-value=9.9e-29  Score=253.58  Aligned_cols=282  Identities=13%  Similarity=0.103  Sum_probs=225.9

Q ss_pred             CceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEEeCC
Q 008496          216 SEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYD  295 (563)
Q Consensus       216 ~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~d  295 (563)
                      ..+.+++|+|++.++++++.|+.|++||+.++....            .........+...|.+++|++++.++++++.|
T Consensus       123 ~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~------------~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d  190 (433)
T 3bws_A          123 FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVR------------LSPPEKYKKKLGFVETISIPEHNELWVSQMQA  190 (433)
T ss_dssp             SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEE------------ECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGG
T ss_pred             CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEee------------ecCcccccccCCceeEEEEcCCCEEEEEECCC
Confidence            446689999987888888899999999987654210            00001122456689999999999999999999


Q ss_pred             CeEEEEEcCC-ceeEeeccCCCCEEEEEeCCCCCEEE-EeeCCCcEEEEECCCCceeEEeeecccCeEEEecCCCc-eEE
Q 008496          296 GQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLL-TGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNV-SFA  372 (563)
Q Consensus       296 g~i~vw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~-s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  372 (563)
                      +.|++|+... .....+..|...+.+++|+|++++++ +++.|+.|++||+++++....+..+. .+..+.|.++. .++
T Consensus       191 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~g~~l~  269 (433)
T 3bws_A          191 NAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIG-LPRGLLLSKDGKELY  269 (433)
T ss_dssp             TEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCS-EEEEEEECTTSSEEE
T ss_pred             CEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCC-CceEEEEcCCCCEEE
Confidence            9999999764 56677788999999999999999885 55579999999999998877666543 46777886554 555


Q ss_pred             EEe--------CCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCC-EEEEEeCCCcEEEEeCCCCceeeeecccCCCE
Q 008496          373 TSS--------TDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGS-LLASCSDDVTAKIWNMKQDKYVHDLREHSKEI  443 (563)
Q Consensus       373 ~~~--------~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~-~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i  443 (563)
                      +++        .|+.|++|++...+.+..+ .|...+.+++|+|+++ ++++++.|+.|++||+.+++.+..+. +...+
T Consensus       270 ~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~  347 (433)
T 3bws_A          270 IAQFSASNQESGGGRLGIYSMDKEKLIDTI-GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKP  347 (433)
T ss_dssp             EEEEESCTTCSCCEEEEEEETTTTEEEEEE-EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSE
T ss_pred             EEECCCCccccCCCeEEEEECCCCcEEeec-cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec-CCCCC
Confidence            555        4889999999887766554 4566889999999997 45777899999999999988877665 67789


Q ss_pred             EEEEEccCCCCCCCCCCcEEEEEEeC---------------CCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEE
Q 008496          444 YTIRWSPTGSGTNNPNQQLILASASF---------------DSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLAS  508 (563)
Q Consensus       444 ~~~~~~p~~~~~~~~~~~~~l~s~s~---------------dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~las  508 (563)
                      .+++|+|++.         +|++++.               ||.|++||+.+++.+..+..+ ..+.+++|+|||++|++
T Consensus       348 ~~~~~s~dg~---------~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~  417 (433)
T 3bws_A          348 NTIALSPDGK---------YLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAG-NQPTGLDVSPDNRYLVI  417 (433)
T ss_dssp             EEEEECTTSS---------EEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECS-SSEEEEEECTTSCEEEE
T ss_pred             CeEEEcCCCC---------EEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCC-CCCceEEEcCCCCEEEE
Confidence            9999999875         4555544               679999999999998888764 57899999999999998


Q ss_pred             EeC-CCcEEEEecCC
Q 008496          509 GSL-DKSMHIWSLKE  522 (563)
Q Consensus       509 gs~-dg~v~iw~~~~  522 (563)
                      ++. |+.|++|++..
T Consensus       418 ~~~~d~~i~v~~~~~  432 (433)
T 3bws_A          418 SDFLDHQIRVYRRDG  432 (433)
T ss_dssp             EETTTTEEEEEEETT
T ss_pred             EECCCCeEEEEEecC
Confidence            875 99999999863

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.97  E-value=1.6e-27  Score=250.51  Aligned_cols=312  Identities=12%  Similarity=0.106  Sum_probs=242.1

Q ss_pred             EECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEEeCCCeEEEE
Q 008496          222 AWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIW  301 (563)
Q Consensus       222 ~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw  301 (563)
                      +|+|++.++++++.|++|++||..+++..             ..+..     ...+..++|+|+|++|++++.|+.|++|
T Consensus       144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~-------------~~i~~-----g~~~~~v~~spdg~~l~v~~~d~~V~v~  205 (543)
T 1nir_A          144 DLDLPNLFSVTLRDAGQIALVDGDSKKIV-------------KVIDT-----GYAVHISRMSASGRYLLVIGRDARIDMI  205 (543)
T ss_dssp             CCCGGGEEEEEEGGGTEEEEEETTTCCEE-------------EEEEC-----STTEEEEEECTTSCEEEEEETTSEEEEE
T ss_pred             ccCCCCEEEEEEcCCCeEEEEECCCceEE-------------EEEec-----CcccceEEECCCCCEEEEECCCCeEEEE
Confidence            38899999999999999999998765421             11111     1228899999999999999999999999


Q ss_pred             Ec--C-CceeEeeccCCCCEEEEEeCC----CCCEEEEee-CCCcEEEEECCCCceeEEeeec----------cc-CeEE
Q 008496          302 ST--N-GDLKCTLSKHKGPIFSLKWNK----KGDYLLTGS-CDKTAIVWDVKTEEWKQQFEFH----------SG-PTLD  362 (563)
Q Consensus       302 ~~--~-~~~~~~~~~h~~~V~~l~~~~----~~~~l~s~s-~D~~v~iwd~~~~~~~~~~~~~----------~~-~~~~  362 (563)
                      |.  . +....++. +...+..++|+|    +|++|++++ .+++|.+||..+++++..+..+          .. .+..
T Consensus       206 D~~~~t~~~~~~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~  284 (543)
T 1nir_A          206 DLWAKEPTKVAEIK-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAA  284 (543)
T ss_dssp             ETTSSSCEEEEEEE-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEE
T ss_pred             ECcCCCCcEEEEEe-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEE
Confidence            98  3 45555665 445679999999    999999887 4899999999999988877642          22 3455


Q ss_pred             EecCC--CceEEEEeCCCeEEEEEcCCCccee--eecCCCcceeEEEECCCCCEEEE-EeCCCcEEEEeCCCCceeeeec
Q 008496          363 VDWRN--NVSFATSSTDNMIYVCKIGENRPIK--TFAGHQGEVNCVKWDPTGSLLAS-CSDDVTAKIWNMKQDKYVHDLR  437 (563)
Q Consensus       363 ~~~~~--~~~~~~~~~d~~i~~~~~~~~~~~~--~~~~h~~~i~~~~~~~~~~~las-~s~dg~i~iwd~~~~~~~~~~~  437 (563)
                      +.+..  ...+++...++.|.+|+....+.+.  .+ .+...+..+.|+|+|++|++ +..+++|.+||..+++++..+.
T Consensus       285 i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i-~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~  363 (543)
T 1nir_A          285 IIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSI-GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVD  363 (543)
T ss_dssp             EEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEE-ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEE
T ss_pred             EEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEe-ccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeec
Confidence            55543  3456777889999999998755433  33 35566888999999997655 4568999999999999887765


Q ss_pred             c----cCCCEEEEEEccCCCCCCCCCCcEEEEEEe-CCCeEEEEeCCC-------CeEEEEecCCCCCEEEEEEcCCCCE
Q 008496          438 E----HSKEIYTIRWSPTGSGTNNPNQQLILASAS-FDSTVKLWDVEL-------GKLLYSLNGHREPVYSLAFSPTGEY  505 (563)
Q Consensus       438 ~----~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s-~dg~i~iwd~~~-------~~~~~~~~~h~~~i~~l~~spdg~~  505 (563)
                      .    |.+....+ ++|++.        .++++++ .|++|++||+.+       .+++.++.+|...+..++|||||++
T Consensus       364 ~g~~ph~g~g~~~-~~p~~g--------~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~  434 (543)
T 1nir_A          364 VGKTPHPGRGANF-VHPKYG--------PVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSH  434 (543)
T ss_dssp             CSSSBCCTTCEEE-EETTTE--------EEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCE
T ss_pred             cCCCCCCCCCccc-CCCCCc--------cEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCc
Confidence            4    54433333 345432        3677776 689999999998       8999999999888899999999999


Q ss_pred             EEEEe-------CCCcEEEEecCCCeeE-EEE---------ecCCCEEEEEEcCCCCEEEEEEC-----CCeEEEEEee
Q 008496          506 LASGS-------LDKSMHIWSLKEGKIV-KTY---------TGNGGIFEVCWNKEGDKIAACFA-----NHTVCVLDFR  562 (563)
Q Consensus       506 lasgs-------~dg~v~iw~~~~~~~~-~~~---------~~~~~i~~l~w~~~g~~la~~~~-----~~~v~v~~~~  562 (563)
                      |++++       .+++|.|||+.+++.+ ..+         .+...+..+.|+|+|+.|.++..     ++.|.|||.+
T Consensus       435 l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~  513 (543)
T 1nir_A          435 LYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDK  513 (543)
T ss_dssp             EEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETT
T ss_pred             EEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECC
Confidence            99987       2679999999999876 554         22456889999999999998743     6899999864

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.96  E-value=6.3e-28  Score=245.91  Aligned_cols=299  Identities=15%  Similarity=0.159  Sum_probs=224.5

Q ss_pred             CceEEEEECCCC-CEEEEee----CCC----cEEEEec--CCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECC
Q 008496          216 SEVCACAWSPAG-SLLASGS----GDS----TARIWTI--ADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG  284 (563)
Q Consensus       216 ~~V~~~~~sp~~-~~latgs----~D~----~i~iW~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~  284 (563)
                      ..|...+|++.| .++++|+    .||    .++|||+  .++...           ....+.+    +...+..+++++
T Consensus        63 ~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~-----------~~~~~~~----~~~~~~~~~~~~  127 (415)
T 2hqs_A           63 QEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVL-----------AQNSYKV----NKQWLRYAGHTA  127 (415)
T ss_dssp             GGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEE-----------EEEEEEE----CGGGHHHHHHHH
T ss_pred             cCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEE-----------eeeEEEc----ChhHHHHHHHHH
Confidence            456778899987 4777887    567    8999999  665421           0011111    112233344432


Q ss_pred             --------------CCCEEEEEeCC------CeEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEEEeeCCC---cEEE
Q 008496          285 --------------EGTLLATGSYD------GQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDK---TAIV  341 (563)
Q Consensus       285 --------------~g~~l~sg~~d------g~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~---~v~i  341 (563)
                                    .+..++.++.+      +.|++||.++.....+..|...|.+++|+|+|++|++++.|+   .|++
T Consensus       128 ~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~  207 (415)
T 2hqs_A          128 SDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVI  207 (415)
T ss_dssp             HHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEE
T ss_pred             HHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCCCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEE
Confidence                          25666666654      799999999877788889999999999999999999999885   9999


Q ss_pred             EECCCCceeEEeeecccCeEEEecCCCce-EE-EEeCCC--eEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEe
Q 008496          342 WDVKTEEWKQQFEFHSGPTLDVDWRNNVS-FA-TSSTDN--MIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCS  417 (563)
Q Consensus       342 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~d~--~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s  417 (563)
                      ||+.+++.. .+..+...+..+.|.++.. ++ +++.++  .|++|++.+.+. ..+..|...+.+++|+|+|+.|++++
T Consensus       208 ~d~~tg~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s  285 (415)
T 2hqs_A          208 QTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTS  285 (415)
T ss_dssp             EETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEE
T ss_pred             EECCCCcEE-EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEE
Confidence            999998765 4555667788999987654 44 455444  599999987654 56778888999999999999998888


Q ss_pred             C-CC--cEEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCC---CeEEEEeCCCCeEEEEecCCC
Q 008496          418 D-DV--TAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFD---STVKLWDVELGKLLYSLNGHR  491 (563)
Q Consensus       418 ~-dg--~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~d---g~i~iwd~~~~~~~~~~~~h~  491 (563)
                      . ++  .|.+||+.++.. ..+..+...+.+++|+|+|.         +|++++.+   ..|++||+.+++.. .+..+.
T Consensus       286 ~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdG~---------~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~  354 (415)
T 2hqs_A          286 DQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGK---------FMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTF  354 (415)
T ss_dssp             CTTSSCEEEEEETTSSCC-EECCCSSSEEEEEEECTTSS---------EEEEEEECSSCEEEEEEETTTCCEE-ECCCSS
T ss_pred             CCCCCcEEEEEECCCCCE-EEEecCCCcccCeEECCCCC---------EEEEEECcCCceEEEEEECCCCCEE-EecCCC
Confidence            6 45  577778887764 34556777899999999986         45555543   58999999988774 566554


Q ss_pred             CCEEEEEEcCCCCEEEEEeCCC---cEEEEecCCCeeEEEEec-CCCEEEEEEcCCC
Q 008496          492 EPVYSLAFSPTGEYLASGSLDK---SMHIWSLKEGKIVKTYTG-NGGIFEVCWNKEG  544 (563)
Q Consensus       492 ~~i~~l~~spdg~~lasgs~dg---~v~iw~~~~~~~~~~~~~-~~~i~~l~w~~~g  544 (563)
                       .+.+++|+|||++|++++.++   .|++||+..+. +..+.. .+.|.+++|+|.-
T Consensus       355 -~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~-~~~l~~~~~~v~~~~~~~~~  409 (415)
T 2hqs_A          355 -LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRF-KARLPATDGQVKFPAWSPYL  409 (415)
T ss_dssp             -SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCC-EEECCCSSSEEEEEEECCCC
T ss_pred             -CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCCc-EEEeeCCCCCCcCCcccccc
Confidence             899999999999999988877   79999987544 455544 4679999999964

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.96  E-value=1.5e-27  Score=262.11  Aligned_cols=333  Identities=15%  Similarity=0.141  Sum_probs=239.6

Q ss_pred             CceEEEEECCCCCEEEEeeC-CC-----cEEEEecCCCCCcCCCCCCCce----EEEE--Eeeecccc-cCCCCeEEEEE
Q 008496          216 SEVCACAWSPAGSLLASGSG-DS-----TARIWTIADGTSNGGAQNGPLN----VLVL--KHVKGRTN-EKSKDVTTLDW  282 (563)
Q Consensus       216 ~~V~~~~~sp~~~~latgs~-D~-----~i~iW~~~~~~~~~~~~~~~~~----~~~~--~~~~~~~~-~~~~~V~~l~~  282 (563)
                      ..|.+++|||||++|++++. |+     .|++|++.++............    .+..  ........ .....|.+++|
T Consensus        37 ~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  116 (741)
T 2ecf_A           37 PTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQW  116 (741)
T ss_dssp             CCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEE
T ss_pred             CCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEE
Confidence            45889999999999999998 88     8999999876421100000000    0000  00000000 00023788999


Q ss_pred             CCCCCEEEEEeCCCeEEEEEcCCc---eeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccC
Q 008496          283 NGEGTLLATGSYDGQARIWSTNGD---LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGP  359 (563)
Q Consensus       283 s~~g~~l~sg~~dg~i~vw~~~~~---~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~  359 (563)
                      ||||++|++++. +.|++|+..+.   ....+..|...+..++|+|+|++|++++ ++.|++||+.+++.......+...
T Consensus       117 SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~~~~~~  194 (741)
T 2ecf_A          117 SPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLTADGSTT  194 (741)
T ss_dssp             CTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECCCCCCSS
T ss_pred             CCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEeccCCccc
Confidence            999999999987 99999998876   6667788889999999999999999887 569999999988765544333221


Q ss_pred             ----------------eEEEecCCCc-eEEEEeCCC---------------------------------eEEEEEcCC-C
Q 008496          360 ----------------TLDVDWRNNV-SFATSSTDN---------------------------------MIYVCKIGE-N  388 (563)
Q Consensus       360 ----------------~~~~~~~~~~-~~~~~~~d~---------------------------------~i~~~~~~~-~  388 (563)
                                      +..+.|.++. .++.++.|+                                 .|++|++.+ .
T Consensus       195 ~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~  274 (741)
T 2ecf_A          195 IGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQA  274 (741)
T ss_dssp             EEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTC
T ss_pred             eeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCC
Confidence                            3557787554 455555443                                 788888877 6


Q ss_pred             cceeeec--CCCcceeEEEECCCCCEEEEEeC-----CCcEEEEeCCCCceeeeecccCC----CEEEEEEccCCCCCCC
Q 008496          389 RPIKTFA--GHQGEVNCVKWDPTGSLLASCSD-----DVTAKIWNMKQDKYVHDLREHSK----EIYTIRWSPTGSGTNN  457 (563)
Q Consensus       389 ~~~~~~~--~h~~~i~~~~~~~~~~~las~s~-----dg~i~iwd~~~~~~~~~~~~~~~----~i~~~~~~p~~~~~~~  457 (563)
                      +......  .|...+..++| |||+.|++++.     +..|++||+.+++....+..+..    .+..+.|+|+|.    
T Consensus       275 ~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~----  349 (741)
T 2ecf_A          275 QTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGS----  349 (741)
T ss_dssp             CCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSC----
T ss_pred             ceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCe----
Confidence            6544433  47788999999 99999887653     67899999999887666655543    345789999875    


Q ss_pred             CCCcEEEEEEeCCCeEEEEeCC-CCeEEEEecCCCCCEEEE-EEcCCCCEEEE-EeCCC--cEEEEecCC-CeeEEEEec
Q 008496          458 PNQQLILASASFDSTVKLWDVE-LGKLLYSLNGHREPVYSL-AFSPTGEYLAS-GSLDK--SMHIWSLKE-GKIVKTYTG  531 (563)
Q Consensus       458 ~~~~~~l~s~s~dg~i~iwd~~-~~~~~~~~~~h~~~i~~l-~~spdg~~las-gs~dg--~v~iw~~~~-~~~~~~~~~  531 (563)
                           ++++++.||.++||.+. .++ ...+..|...|.++ +|||||+.|+. ++.++  .++||++.. ++.+..+..
T Consensus       350 -----~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~  423 (741)
T 2ecf_A          350 -----ILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLSK  423 (741)
T ss_dssp             -----EEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECCC
T ss_pred             -----EEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeeccc
Confidence                 67888999988888765 355 77888888889887 59999997754 55555  899999864 555666666


Q ss_pred             CCCEEEEEEcCCCCEEEEEECC----CeEEEEEe
Q 008496          532 NGGIFEVCWNKEGDKIAACFAN----HTVCVLDF  561 (563)
Q Consensus       532 ~~~i~~l~w~~~g~~la~~~~~----~~v~v~~~  561 (563)
                      ...+..++|+|||++|++.+.+    ..+.+++.
T Consensus       424 ~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~  457 (741)
T 2ecf_A          424 APGMHSASFARNASVYVDSWSNNSTPPQIELFRA  457 (741)
T ss_dssp             SCSEEEEEECTTSSEEEEEEEETTEEEEEEEEET
T ss_pred             CCCceEEEECCCCCEEEEEecCCCCCCeEEEEEc
Confidence            6778999999999999987654    34566653

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.95  E-value=9.5e-26  Score=256.58  Aligned_cols=323  Identities=11%  Similarity=0.086  Sum_probs=236.8

Q ss_pred             CCceeEecCCCCceEEEEECCCCCEEEEeeCC------CcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCe-
Q 008496          205 NSDVTILEGHTSEVCACAWSPAGSLLASGSGD------STARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDV-  277 (563)
Q Consensus       205 ~~~~~~l~~h~~~V~~~~~sp~~~~latgs~D------~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V-  277 (563)
                      ......|.+|...|.+++|||||++||+++.+      ..|++|++.++..              ..+.    .+...+ 
T Consensus        42 gg~~~~lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~~--------------~~lt----~~~~~~~  103 (1045)
T 1k32_A           42 SGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEI--------------KRIT----YFSGKST  103 (1045)
T ss_dssp             TCCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEE--------------EECC----CCCEEEE
T ss_pred             CCcEEEeeeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCCe--------------EEcc----cCCCccc
Confidence            33456778899999999999999999988643      4789999865431              1111    112334 


Q ss_pred             ------EEEEECCCCCEEEEEeCC------CeEEEEEcCCceeE------------------------------------
Q 008496          278 ------TTLDWNGEGTLLATGSYD------GQARIWSTNGDLKC------------------------------------  309 (563)
Q Consensus       278 ------~~l~~s~~g~~l~sg~~d------g~i~vw~~~~~~~~------------------------------------  309 (563)
                            ..++|+|||+++++++.+      ..|++|+..+....                                    
T Consensus       104 ~~~~~~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~  183 (1045)
T 1k32_A          104 GRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGT  183 (1045)
T ss_dssp             TTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTT
T ss_pred             ccccccccccCCCCCEEEEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCC
Confidence                  889999999977887754      35777775432211                                    


Q ss_pred             --------------eeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCC-CceeEEeeecccCeEEEecCCCce-EEE
Q 008496          310 --------------TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKT-EEWKQQFEFHSGPTLDVDWRNNVS-FAT  373 (563)
Q Consensus       310 --------------~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~  373 (563)
                                    .+.+|...+.++.|+++ ..+++++.|+++.||.+.. +.....+..+. .+....|.++.. ++.
T Consensus       184 ~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~~~~SpDG~~la~  261 (1045)
T 1k32_A          184 RGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYPRHLNTDGRRILF  261 (1045)
T ss_dssp             CCEEEEEEETTEEEEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCEEEEEESSSCEEE
T ss_pred             cCCEEEECCCCCeEECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCC-CcceeeEcCCCCEEEE
Confidence                          22456777888889887 5666778889999997643 22333333333 233445654443 444


Q ss_pred             EeCCCeEEEEEcCCCcceeeecC-----------CCcceeEEEEC-CCCCEEEEEeCCCcEEEEeCCCCceeeeecccCC
Q 008496          374 SSTDNMIYVCKIGENRPIKTFAG-----------HQGEVNCVKWD-PTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSK  441 (563)
Q Consensus       374 ~~~d~~i~~~~~~~~~~~~~~~~-----------h~~~i~~~~~~-~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~  441 (563)
                      + .++.|++|++.. ..+..+.+           |...+.+++|+ |+|+.|++++ ++.+.+|+...+... .+..|..
T Consensus       262 ~-~~~~i~~~d~~~-~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~-~~~~~~~  337 (1045)
T 1k32_A          262 S-KGGSIYIFNPDT-EKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVL-KVPEPLR  337 (1045)
T ss_dssp             E-ETTEEEEECTTT-CCEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEE-ECSCCSC
T ss_pred             E-eCCEEEEecCCc-eEeeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceE-EccCCCc
Confidence            3 589999999843 33445544           34578999999 9999999888 789999999877644 4566777


Q ss_pred             -CEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEE-EEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 008496          442 -EIYTIRWSPTGSGTNNPNQQLILASASFDSTVK-LWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWS  519 (563)
Q Consensus       442 -~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~-iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~  519 (563)
                       .+..++|+ ++.         .|++++.++.|. +||+..++.. .+.+|...+..++|||||++||+++.++.|++||
T Consensus       338 ~~~~~~~~s-dg~---------~l~~~s~~~~l~~~~d~~~~~~~-~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d  406 (1045)
T 1k32_A          338 IRYVRRGGD-TKV---------AFIHGTREGDFLGIYDYRTGKAE-KFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVD  406 (1045)
T ss_dssp             EEEEEECSS-SEE---------EEEEEETTEEEEEEEETTTCCEE-ECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             ceEEeeeEc-CCC---------eEEEEECCCceEEEEECCCCCce-EecCCccceeeeEECCCCCEEEEECCCCeEEEEE
Confidence             88999998 764         577777788898 9999877654 4447888899999999999999999999999999


Q ss_pred             cCCCeeEEEEec-CCCEEEEEEcCCCCEEEEEECCC----------eEEEEEee
Q 008496          520 LKEGKIVKTYTG-NGGIFEVCWNKEGDKIAACFANH----------TVCVLDFR  562 (563)
Q Consensus       520 ~~~~~~~~~~~~-~~~i~~l~w~~~g~~la~~~~~~----------~v~v~~~~  562 (563)
                      +.++++...... .+.+..++|+|||++||++..++          .|.+||+.
T Consensus       407 ~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~  460 (1045)
T 1k32_A          407 LETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDME  460 (1045)
T ss_dssp             TTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETT
T ss_pred             CCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECC
Confidence            999998777744 45678999999999999887654          89999864

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.95  E-value=2.3e-25  Score=253.41  Aligned_cols=337  Identities=13%  Similarity=0.125  Sum_probs=247.1

Q ss_pred             ceeEecCCCCce-------EEEEECCCCCEEEEeeCC------CcEEEEecCCCCCcCCCCCC-----------------
Q 008496          207 DVTILEGHTSEV-------CACAWSPAGSLLASGSGD------STARIWTIADGTSNGGAQNG-----------------  256 (563)
Q Consensus       207 ~~~~l~~h~~~V-------~~~~~sp~~~~latgs~D------~~i~iW~~~~~~~~~~~~~~-----------------  256 (563)
                      ....|.+|...+       .+++|||||+++++++.+      ..+.+|++.++....-....                 
T Consensus        91 ~~~~lt~~~~~~~~~~~~~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~  170 (1045)
T 1k32_A           91 EIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNT  170 (1045)
T ss_dssp             EEEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESC
T ss_pred             CeEEcccCCCcccccccccccccCCCCCEEEEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccC
Confidence            345677888888       999999999988888755      35777777554321100000                 


Q ss_pred             -------------CceEEEEEe--eecccccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEc--CCceeEeeccCCCCEE
Q 008496          257 -------------PLNVLVLKH--VKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWST--NGDLKCTLSKHKGPIF  319 (563)
Q Consensus       257 -------------~~~~~~~~~--~~~~~~~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~--~~~~~~~~~~h~~~V~  319 (563)
                                   ....+....  .......+...+.++.|+++ .++++++.+|.++||..  .+.....+..|. .+.
T Consensus       171 ~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~  248 (1045)
T 1k32_A          171 FELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYY  248 (1045)
T ss_dssp             SCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSC
T ss_pred             CCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCC-Ccc
Confidence                         000000000  00011245677899999998 67778888899999974  355555666665 356


Q ss_pred             EEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeee-----------cccCeEEEecC-CCce-EEEEeCCCeEEEEEcC
Q 008496          320 SLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEF-----------HSGPTLDVDWR-NNVS-FATSSTDNMIYVCKIG  386 (563)
Q Consensus       320 ~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~-----------~~~~~~~~~~~-~~~~-~~~~~~d~~i~~~~~~  386 (563)
                      .++|+|+|++|+++ .++.|.+||+...... .+..           +...+..+.|. ++.. ++.++ ++.+++|+..
T Consensus       249 ~~~~SpDG~~la~~-~~~~i~~~d~~~~~l~-~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~  325 (1045)
T 1k32_A          249 PRHLNTDGRRILFS-KGGSIYIFNPDTEKIE-KIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVS  325 (1045)
T ss_dssp             EEEEEESSSCEEEE-ETTEEEEECTTTCCEE-ECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTT
T ss_pred             eeeEcCCCCEEEEE-eCCEEEEecCCceEee-eeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCC
Confidence            77999999998887 5899999998554433 3332           22346678887 6654 44444 8899999987


Q ss_pred             CCcceeeecCCCc-ceeEEEECCCCCEEEEEeCCCcEE-EEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEE
Q 008496          387 ENRPIKTFAGHQG-EVNCVKWDPTGSLLASCSDDVTAK-IWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLIL  464 (563)
Q Consensus       387 ~~~~~~~~~~h~~-~i~~~~~~~~~~~las~s~dg~i~-iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l  464 (563)
                      ..... .+..|.+ .+.+++|+ +|+.|++++.++.+. +|++.++... .+..|...+..++|+|+|.         .|
T Consensus       326 ~~~~~-~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~-~l~~~~~~~~~~~~SpDG~---------~l  393 (1045)
T 1k32_A          326 GTYVL-KVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAE-KFEENLGNVFAMGVDRNGK---------FA  393 (1045)
T ss_dssp             SSBEE-ECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEE-ECCCCCCSEEEEEECTTSS---------EE
T ss_pred             CCceE-EccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCce-EecCCccceeeeEECCCCC---------EE
Confidence            66543 4667777 89999999 999999999988888 9998877654 3447778899999999986         78


Q ss_pred             EEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCC----------cEEEEecCCCeeEEEEecCCC
Q 008496          465 ASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDK----------SMHIWSLKEGKIVKTYTGNGG  534 (563)
Q Consensus       465 ~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg----------~v~iw~~~~~~~~~~~~~~~~  534 (563)
                      ++++.++.|++||+.+++....+.+|...|.+++|||||++||+++.++          .|++||+.+++..........
T Consensus       394 a~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l~~~~~~  473 (1045)
T 1k32_A          394 VVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSH  473 (1045)
T ss_dssp             EEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSB
T ss_pred             EEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcEEEeeCCCcc
Confidence            8999999999999999998877778999999999999999999887654          899999999884333233456


Q ss_pred             EEEEEEcCCCCEEEEEECCCeEEEEE
Q 008496          535 IFEVCWNKEGDKIAACFANHTVCVLD  560 (563)
Q Consensus       535 i~~l~w~~~g~~la~~~~~~~v~v~~  560 (563)
                      +..++|+|||++|++++.++...+|+
T Consensus       474 ~~~~~~spdG~~l~~~s~~~~~~~~~  499 (1045)
T 1k32_A          474 DYAPAFDADSKNLYYLSYRSLDPSPD  499 (1045)
T ss_dssp             EEEEEECTTSCEEEEEESCCCCCEEC
T ss_pred             cCCceEcCCCCEEEEEecccCCcCcc
Confidence            78899999999999998876655554

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.94  E-value=1.1e-24  Score=237.89  Aligned_cols=319  Identities=14%  Similarity=0.161  Sum_probs=225.8

Q ss_pred             eEEEEECCCCCEEEEeeCCCcEEEEecCCCCCc-CCCCCCCceEEEEEeeec---------ccccCCCCeEEEEECCCCC
Q 008496          218 VCACAWSPAGSLLASGSGDSTARIWTIADGTSN-GGAQNGPLNVLVLKHVKG---------RTNEKSKDVTTLDWNGEGT  287 (563)
Q Consensus       218 V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~-~~~~~~~~~~~~~~~~~~---------~~~~~~~~V~~l~~s~~g~  287 (563)
                      +..+.|.  |..+++++.|+ | +||+.++... .        .+ ..+...         ........|.+++|||| .
T Consensus        28 ~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~--------~l-~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~   93 (706)
T 2z3z_A           28 VVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQT--------TR-FSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-G   93 (706)
T ss_dssp             CTTCEEE--TTEEEEEETTE-E-EEEC-------C--------EE-EEHHHHHTTC-----------CCCEEEEETTT-T
T ss_pred             CCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeE--------Ee-echhHhhhhccchhccccccccCceeEEECCC-C
Confidence            4557888  67777888888 7 9999876531 0        00 000000         00011246999999999 6


Q ss_pred             EEEEEeCCCeEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCC-----CceeEEeeecccC---
Q 008496          288 LLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKT-----EEWKQQFEFHSGP---  359 (563)
Q Consensus       288 ~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~-----~~~~~~~~~~~~~---  359 (563)
                      .++.+ .++.+++|+..+.....+..+...+.+++|+|+|++|+++ .|+.|++||+.+     ++..+........   
T Consensus        94 ~~~~~-~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~  171 (706)
T 2z3z_A           94 LVVLF-TQGGLVGFDMLARKVTYLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVY  171 (706)
T ss_dssp             EEEEE-ETTEEEEEETTTTEEEEEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEE
T ss_pred             eEEEE-ECCEEEEEECCCCceEEccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEc
Confidence            66555 4599999999876666666777888999999999999985 789999999998     7765544333332   


Q ss_pred             -----------eEEEecCCCc-eEEEEe---------------------------------CCCeEEEEEcCCCcceeee
Q 008496          360 -----------TLDVDWRNNV-SFATSS---------------------------------TDNMIYVCKIGENRPIKTF  394 (563)
Q Consensus       360 -----------~~~~~~~~~~-~~~~~~---------------------------------~d~~i~~~~~~~~~~~~~~  394 (563)
                                 +..+.|.++. .++.++                                 .+..|++|++.++......
T Consensus       172 g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~  251 (706)
T 2z3z_A          172 GQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQ  251 (706)
T ss_dssp             SSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECC
T ss_pred             ccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeec
Confidence                       3577887654 455554                                 3467999999887654443


Q ss_pred             c--CCCcceeEEEECCCCCEEEEEeCCC-----cEEEEeCCCCceeeeec-c-cCC---CEEEEEEcc--CCCCCCCCCC
Q 008496          395 A--GHQGEVNCVKWDPTGSLLASCSDDV-----TAKIWNMKQDKYVHDLR-E-HSK---EIYTIRWSP--TGSGTNNPNQ  460 (563)
Q Consensus       395 ~--~h~~~i~~~~~~~~~~~las~s~dg-----~i~iwd~~~~~~~~~~~-~-~~~---~i~~~~~~p--~~~~~~~~~~  460 (563)
                      .  .|...+.+++|+|||+.|++++.++     .|++||+.++.....+. . +..   .+..+.|+|  +|.       
T Consensus       252 ~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~-------  324 (706)
T 2z3z_A          252 TGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQ-------  324 (706)
T ss_dssp             CCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSE-------
T ss_pred             cCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCE-------
Confidence            2  4667899999999999999887765     89999999883333332 1 121   235678998  764       


Q ss_pred             cEEEEEEeCCCeEEEEeCC-CCeEEEEecCCCCCEEE-EEEcCCCCEEEEEeC-CC----cEEEEecCCCeeEEEEecCC
Q 008496          461 QLILASASFDSTVKLWDVE-LGKLLYSLNGHREPVYS-LAFSPTGEYLASGSL-DK----SMHIWSLKEGKIVKTYTGNG  533 (563)
Q Consensus       461 ~~~l~s~s~dg~i~iwd~~-~~~~~~~~~~h~~~i~~-l~~spdg~~lasgs~-dg----~v~iw~~~~~~~~~~~~~~~  533 (563)
                        ++++++.||.++||.+. .+..+..+..|...+.+ ++|+|||+.|+.++. ++    .|..|++.+++ +..+....
T Consensus       325 --~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~-~~~l~~~~  401 (706)
T 2z3z_A          325 --FIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK-TKDLTPES  401 (706)
T ss_dssp             --EEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC-CEESCCSS
T ss_pred             --EEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC-ceeccCCC
Confidence              67888999999999876 67778888888888887 799999998866554 44    67777877776 34444566


Q ss_pred             CEEEEEEcCCCCEEEEEECC----CeEEEEEee
Q 008496          534 GIFEVCWNKEGDKIAACFAN----HTVCVLDFR  562 (563)
Q Consensus       534 ~i~~l~w~~~g~~la~~~~~----~~v~v~~~~  562 (563)
                      .+..++|+|||++|++.+.+    +.+.+||++
T Consensus       402 ~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~  434 (706)
T 2z3z_A          402 GMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIG  434 (706)
T ss_dssp             SEEEEEECTTSSEEEEEEECSSCSCEEEEEESS
T ss_pred             ceEEEEECCCCCEEEEEecCCCCCcEEEEEECC
Confidence            78999999999999887554    458898864

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.94  E-value=1.3e-24  Score=221.39  Aligned_cols=272  Identities=13%  Similarity=0.110  Sum_probs=210.8

Q ss_pred             CeEEEEECCCCC-EEEEEe----CCC----eEEEEEc--C-Ccee--EeeccCCCCEEEEEeCC--------------CC
Q 008496          276 DVTTLDWNGEGT-LLATGS----YDG----QARIWST--N-GDLK--CTLSKHKGPIFSLKWNK--------------KG  327 (563)
Q Consensus       276 ~V~~l~~s~~g~-~l~sg~----~dg----~i~vw~~--~-~~~~--~~~~~h~~~V~~l~~~~--------------~~  327 (563)
                      .|...+|++.|. ++++|+    .+|    .++|||.  . ++..  ..+.+|...+..+++++              .+
T Consensus        64 ~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~  143 (415)
T 2hqs_A           64 EVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFR  143 (415)
T ss_dssp             GCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTT
T ss_pred             CcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCC
Confidence            466778888774 666776    467    8999998  4 4544  45778888777777664              15


Q ss_pred             CEEEEeeCC------CcEEEEECCCCceeEEeeecccCeEEEecCCCc-eEEEEeCCC---eEEEEEcCCCcceeeecCC
Q 008496          328 DYLLTGSCD------KTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNV-SFATSSTDN---MIYVCKIGENRPIKTFAGH  397 (563)
Q Consensus       328 ~~l~s~s~D------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~---~i~~~~~~~~~~~~~~~~h  397 (563)
                      ..++.++.+      ++|++||+... ....+..|...+..+.|.++. .++.++.++   .|++|++.+++.. .+..|
T Consensus       144 ~~l~~~s~~~~~~~~~~i~i~d~~g~-~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~  221 (415)
T 2hqs_A          144 TRIAYVVQTNGGQFPYELRVSDYDGY-NQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASF  221 (415)
T ss_dssp             CEEEEEEECSSSSCCEEEEEEETTSC-SCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECC
T ss_pred             CEEEEEEecCCCCccceEEEEcCCCC-CCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-EeecC
Confidence            677766654      79999999754 456677788889999998654 567777664   9999999887664 56778


Q ss_pred             CcceeEEEECCCCCEEE-EEeCCCc--EEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeC-CC--
Q 008496          398 QGEVNCVKWDPTGSLLA-SCSDDVT--AKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASF-DS--  471 (563)
Q Consensus       398 ~~~i~~~~~~~~~~~la-s~s~dg~--i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~-dg--  471 (563)
                      .+.+.+++|+|||+.|+ +++.|+.  |++||+.+++. ..+..|...+.+++|+|+|.         .|++++. ++  
T Consensus       222 ~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~---------~l~~~s~~~g~~  291 (415)
T 2hqs_A          222 PRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQ---------NLAFTSDQAGRP  291 (415)
T ss_dssp             SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSS---------EEEEEECTTSSC
T ss_pred             CCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCC---------EEEEEECCCCCc
Confidence            88999999999999887 6776665  99999988765 56777888999999999986         4565554 45  


Q ss_pred             eEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCC---CcEEEEecCCCeeEEEEecCCCEEEEEEcCCCCEEE
Q 008496          472 TVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLD---KSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIA  548 (563)
Q Consensus       472 ~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~d---g~v~iw~~~~~~~~~~~~~~~~i~~l~w~~~g~~la  548 (563)
                      .|.+||+.+++. ..+..+...+.+++|||||++|++++.+   ..|++||+.++++. .+.....+..++|+|+|+.|+
T Consensus       292 ~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~~~~~~~~spdg~~l~  369 (415)
T 2hqs_A          292 QVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTFLDETPSLAPNGTMVI  369 (415)
T ss_dssp             EEEEEETTSSCC-EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCSSSCEEEEECTTSSEEE
T ss_pred             EEEEEECCCCCE-EEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-EecCCCCcCCeEEcCCCCEEE
Confidence            678889987764 4455677789999999999999988764   58999999998874 344445789999999999999


Q ss_pred             EEECCC---eEEEEEe
Q 008496          549 ACFANH---TVCVLDF  561 (563)
Q Consensus       549 ~~~~~~---~v~v~~~  561 (563)
                      +++.++   .+.+||+
T Consensus       370 ~~s~~~~~~~l~~~d~  385 (415)
T 2hqs_A          370 YSSSQGMGSVLNLVST  385 (415)
T ss_dssp             EEEEETTEEEEEEEET
T ss_pred             EEEcCCCccEEEEEEC
Confidence            887766   6888875

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.94  E-value=3.9e-25  Score=242.23  Aligned_cols=313  Identities=11%  Similarity=0.091  Sum_probs=217.6

Q ss_pred             eEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEEeCC--
Q 008496          218 VCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYD--  295 (563)
Q Consensus       218 V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~d--  295 (563)
                      +.+++|+|+|+++++ +.|++|++|++.++...             .....+ ......|.+++|||||++|++++.+  
T Consensus        19 ~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~-------------~~~~~~-~~~~~~v~~~~~SpDg~~l~~~~~~~~   83 (723)
T 1xfd_A           19 DPEAKWISDTEFIYR-EQKGTVRLWNVETNTST-------------VLIEGK-KIESLRAIRYEISPDREYALFSYNVEP   83 (723)
T ss_dssp             CCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCE-------------EEECTT-TTTTTTCSEEEECTTSSEEEEEESCCC
T ss_pred             ccccEEcCCCcEEEE-eCCCCEEEEECCCCcEE-------------EEeccc-cccccccceEEECCCCCEEEEEecCcc
Confidence            567899999998776 78999999998765421             011111 0111248999999999999999875  


Q ss_pred             -------CeEEEEEcCCceeEeec---cCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCe-----
Q 008496          296 -------GQARIWSTNGDLKCTLS---KHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPT-----  360 (563)
Q Consensus       296 -------g~i~vw~~~~~~~~~~~---~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~-----  360 (563)
                             +.+++|+..+.....+.   .|...+..++|+|+|++|++++. +.|++||+.+++..+....+...+     
T Consensus        84 ~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~  162 (723)
T 1xfd_A           84 IYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGL  162 (723)
T ss_dssp             CSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEE
T ss_pred             ceeecceeeEEEEECCCCceEeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcc
Confidence                   78889998765434343   34455889999999999998875 799999999887766554433322     


Q ss_pred             -------------EEEecCCCc-eEEEEeCCC----------------------------------eEEEEEcCCCccee
Q 008496          361 -------------LDVDWRNNV-SFATSSTDN----------------------------------MIYVCKIGENRPIK  392 (563)
Q Consensus       361 -------------~~~~~~~~~-~~~~~~~d~----------------------------------~i~~~~~~~~~~~~  392 (563)
                                   ..+.|.++. .++.++.++                                  .|++|++.......
T Consensus       163 ~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~  242 (723)
T 1xfd_A          163 SDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDL  242 (723)
T ss_dssp             CCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCE
T ss_pred             cceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeE
Confidence                         568887664 455554332                                  78999998776555


Q ss_pred             eecCC------CcceeEEEECCCCCEEEEEeC----CCcEEEEeCCCCceeeeeccc-CCCE----EEEEEccCCCCCCC
Q 008496          393 TFAGH------QGEVNCVKWDPTGSLLASCSD----DVTAKIWNMKQDKYVHDLREH-SKEI----YTIRWSPTGSGTNN  457 (563)
Q Consensus       393 ~~~~h------~~~i~~~~~~~~~~~las~s~----dg~i~iwd~~~~~~~~~~~~~-~~~i----~~~~~~p~~~~~~~  457 (563)
                      .+..+      ...+.+++|+|||++|++.+.    +..|++||+.+++....+..+ ...+    ..++|+|+|..   
T Consensus       243 ~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~---  319 (723)
T 1xfd_A          243 EMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRK---  319 (723)
T ss_dssp             ECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCS---
T ss_pred             EeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCe---
Confidence            55554      567899999999999877653    367999999988876554433 3333    37899998852   


Q ss_pred             CCCcEEEEEEeCCC------eEEEEe-CCCCe--EEEEecCCCCCEEE-EEEcCCCCEEEEEeCC---CcEEEEecCCCe
Q 008496          458 PNQQLILASASFDS------TVKLWD-VELGK--LLYSLNGHREPVYS-LAFSPTGEYLASGSLD---KSMHIWSLKEGK  524 (563)
Q Consensus       458 ~~~~~~l~s~s~dg------~i~iwd-~~~~~--~~~~~~~h~~~i~~-l~~spdg~~lasgs~d---g~v~iw~~~~~~  524 (563)
                          ++++++..++      .|.+|| ...+.  +...+..+...+.. ++|||||++|+..+.+   +.++||++....
T Consensus       320 ----l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~  395 (723)
T 1xfd_A          320 ----FFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVG  395 (723)
T ss_dssp             ----EEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSST
T ss_pred             ----EEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCC
Confidence                2333466777      577777 34443  14455544444554 6999999999866655   789999986421


Q ss_pred             --eEEEEec----CCCEEEEEEcCCCCEEEEEECC
Q 008496          525 --IVKTYTG----NGGIFEVCWNKEGDKIAACFAN  553 (563)
Q Consensus       525 --~~~~~~~----~~~i~~l~w~~~g~~la~~~~~  553 (563)
                        ....+..    ...+..++|+|||++|++.+.+
T Consensus       396 ~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~~~  430 (723)
T 1xfd_A          396 NFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCEG  430 (723)
T ss_dssp             TCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECCS
T ss_pred             CCCcceecccccCCCCeEEEEECCCCCEEEEEccC
Confidence              2233332    3457899999999999886543

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.93  E-value=1.9e-23  Score=219.48  Aligned_cols=294  Identities=14%  Similarity=0.147  Sum_probs=222.1

Q ss_pred             eeEec-CCCCceEEEEECCCCCEEEEeeCCCcEEEEec--CCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECC
Q 008496          208 VTILE-GHTSEVCACAWSPAGSLLASGSGDSTARIWTI--ADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG  284 (563)
Q Consensus       208 ~~~l~-~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~  284 (563)
                      +.++. +|.  +++++|+|+|++|++++.|++|++||+  .++.             .+..+.     ....+..++|+|
T Consensus       172 ~~~i~~g~~--~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~-------------~~~~i~-----~g~~p~~va~sp  231 (543)
T 1nir_A          172 VKVIDTGYA--VHISRMSASGRYLLVIGRDARIDMIDLWAKEPT-------------KVAEIK-----IGIEARSVESSK  231 (543)
T ss_dssp             EEEEECSTT--EEEEEECTTSCEEEEEETTSEEEEEETTSSSCE-------------EEEEEE-----CCSEEEEEEECC
T ss_pred             EEEEecCcc--cceEEECCCCCEEEEECCCCeEEEEECcCCCCc-------------EEEEEe-----cCCCcceEEeCC
Confidence            34455 443  889999999999999999999999998  4322             111121     134578999999


Q ss_pred             ----CCCEEEEEeC-CCeEEEEEcC-CceeEeecc----------CCC-CEEEEEeCCCCCE-EEEeeCCCcEEEEECCC
Q 008496          285 ----EGTLLATGSY-DGQARIWSTN-GDLKCTLSK----------HKG-PIFSLKWNKKGDY-LLTGSCDKTAIVWDVKT  346 (563)
Q Consensus       285 ----~g~~l~sg~~-dg~i~vw~~~-~~~~~~~~~----------h~~-~V~~l~~~~~~~~-l~s~s~D~~v~iwd~~~  346 (563)
                          +|++++++++ ++.|.+||.. ++...++..          |.. .+.++.++|++.. +++...+++|.+||..+
T Consensus       232 ~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~  311 (543)
T 1nir_A          232 FKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKD  311 (543)
T ss_dssp             STTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTT
T ss_pred             CcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecC
Confidence                9999999885 8999999975 344444443          333 6899999998765 55677789999999987


Q ss_pred             CceeE--EeeecccCeEEEecCCCce--EEEEeCCCeEEEEEcCCCcceeeecC----CCcceeEEEECCC-CCEEEEEe
Q 008496          347 EEWKQ--QFEFHSGPTLDVDWRNNVS--FATSSTDNMIYVCKIGENRPIKTFAG----HQGEVNCVKWDPT-GSLLASCS  417 (563)
Q Consensus       347 ~~~~~--~~~~~~~~~~~~~~~~~~~--~~~~~~d~~i~~~~~~~~~~~~~~~~----h~~~i~~~~~~~~-~~~las~s  417 (563)
                      .+...  .+. +...+.++.|..+..  ++++..++.|.+||..+++.+..+..    |.+....+ ++|+ +.++++++
T Consensus       312 ~~~l~~~~i~-~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~  389 (543)
T 1nir_A          312 IDNLTVTSIG-AAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSH  389 (543)
T ss_dssp             SSSCEEEEEE-CCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEB
T ss_pred             CCcceeEEec-cCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEecc
Confidence            65443  222 333455667765543  34566789999999999988877764    55444333 4677 67778876


Q ss_pred             -CCCcEEEEeCCC-------CceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEe-------CCCeEEEEeCCCCe
Q 008496          418 -DDVTAKIWNMKQ-------DKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASAS-------FDSTVKLWDVELGK  482 (563)
Q Consensus       418 -~dg~i~iwd~~~-------~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s-------~dg~i~iwd~~~~~  482 (563)
                       .|++|.+||+.+       .+++.++..|...+..++++|++.         .|.+++       .+++|.+||+.+++
T Consensus       390 ~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~---------~l~v~~~~~~~~~~~~~v~v~d~~~~~  460 (543)
T 1nir_A          390 LGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSS---------HLYVDTTFNPDARISQSVAVFDLKNLD  460 (543)
T ss_dssp             SSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCC---------EEEECCTTCSSHHHHTCEEEEETTCTT
T ss_pred             CCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCC---------cEEEecCCCCCcccCceEEEEECCCCC
Confidence             689999999988       888999999988889999999986         566665       27799999999887


Q ss_pred             EE-EEe--------cCCCCCEEEEEEcCCCCEEEEEe-----CCCcEEEEecCCCeeEEEEecC
Q 008496          483 LL-YSL--------NGHREPVYSLAFSPTGEYLASGS-----LDKSMHIWSLKEGKIVKTYTGN  532 (563)
Q Consensus       483 ~~-~~~--------~~h~~~i~~l~~spdg~~lasgs-----~dg~v~iw~~~~~~~~~~~~~~  532 (563)
                      .. ..+        ..+...+..+.|+|||++|.++.     .|+.|.|||.++++++++++..
T Consensus       461 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~~~  524 (543)
T 1nir_A          461 AKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKDP  524 (543)
T ss_dssp             SCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECCT
T ss_pred             CCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEEEeecCC
Confidence            76 333        34567899999999999988652     4799999999999999998753

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.93  E-value=4.4e-24  Score=234.48  Aligned_cols=277  Identities=13%  Similarity=0.107  Sum_probs=208.6

Q ss_pred             CCCeEEEEECCCCCEEEEEeC-CC-----eEEEEEcCCc-eeEeeccCCC------------------------CEEEEE
Q 008496          274 SKDVTTLDWNGEGTLLATGSY-DG-----QARIWSTNGD-LKCTLSKHKG------------------------PIFSLK  322 (563)
Q Consensus       274 ~~~V~~l~~s~~g~~l~sg~~-dg-----~i~vw~~~~~-~~~~~~~h~~------------------------~V~~l~  322 (563)
                      ...|.+++|||||++|++++. ||     .|++|+..+. ....+..+..                        .|.+++
T Consensus        36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  115 (741)
T 2ecf_A           36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ  115 (741)
T ss_dssp             CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred             CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence            356899999999999999998 88     8999998654 4444444332                        378899


Q ss_pred             eCCCCCEEEEeeCCCcEEEEECCCCc--eeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcc
Q 008496          323 WNKKGDYLLTGSCDKTAIVWDVKTEE--WKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGE  400 (563)
Q Consensus       323 ~~~~~~~l~s~s~D~~v~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~  400 (563)
                      |+|+|++|++++. ++|++||+.++.  ....+..+...+..+.|.++...+....++.|++|++..+........+...
T Consensus       116 ~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~~~i~~~d~~~g~~~~~~~~~~~~  194 (741)
T 2ecf_A          116 WSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRGRNLWVIDLASGRQMQLTADGSTT  194 (741)
T ss_dssp             ECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEETTEEEEEETTTTEEEECCCCCCSS
T ss_pred             ECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeCCcEEEEecCCCCEEEeccCCccc
Confidence            9999999999886 999999998872  2334555667788899987766544445679999999887765554444332


Q ss_pred             ----------------eeEEEECCCCCEEEEEeCCC---------------------------------cEEEEeCCC-C
Q 008496          401 ----------------VNCVKWDPTGSLLASCSDDV---------------------------------TAKIWNMKQ-D  430 (563)
Q Consensus       401 ----------------i~~~~~~~~~~~las~s~dg---------------------------------~i~iwd~~~-~  430 (563)
                                      +.+++|+|||+.|++++.|+                                 .|.+||+.+ +
T Consensus       195 ~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~  274 (741)
T 2ecf_A          195 IGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQA  274 (741)
T ss_dssp             EEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTC
T ss_pred             eeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCC
Confidence                            47899999999999988765                                 788999988 7


Q ss_pred             ceeeeec--ccCCCEEEEEEccCCCCCCCCCCcEEEEEEe-----CCCeEEEEeCCCCeEEEEecCCCC----CEEEEEE
Q 008496          431 KYVHDLR--EHSKEIYTIRWSPTGSGTNNPNQQLILASAS-----FDSTVKLWDVELGKLLYSLNGHRE----PVYSLAF  499 (563)
Q Consensus       431 ~~~~~~~--~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s-----~dg~i~iwd~~~~~~~~~~~~h~~----~i~~l~~  499 (563)
                      +......  .|...+..++| |+|.         .|+.++     .+..|++||+.++++...+..+..    .+.+++|
T Consensus       275 ~~~~~~~~~~~~~~~~~~~~-pDg~---------~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~  344 (741)
T 2ecf_A          275 QTQWIDLGKEQDIYLARVNW-RDPQ---------HLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRF  344 (741)
T ss_dssp             CCEEECCCSCSSEEEEEEEE-EETT---------EEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEE
T ss_pred             ceEEecCCCCcceEEEEEEe-CCCC---------EEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEE
Confidence            6544332  47778999999 9986         344443     357899999999988766655443    4568999


Q ss_pred             cCCCCEEEEEeCCCcEEEEecC-CCeeEEEEec-CCCEEEE-EEcCCCCEEEEEEC-CC--eEEEEEee
Q 008496          500 SPTGEYLASGSLDKSMHIWSLK-EGKIVKTYTG-NGGIFEV-CWNKEGDKIAACFA-NH--TVCVLDFR  562 (563)
Q Consensus       500 spdg~~lasgs~dg~v~iw~~~-~~~~~~~~~~-~~~i~~l-~w~~~g~~la~~~~-~~--~v~v~~~~  562 (563)
                      +|||+++++++.||.++||.+. +++ ...+.. ...+..+ +|+|+|+.|+++.. ++  .+.||++.
T Consensus       345 spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~  412 (741)
T 2ecf_A          345 LDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVP  412 (741)
T ss_dssp             CTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEE
T ss_pred             CCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEE
Confidence            9999999999999988888765 445 555543 4457776 59999998876654 44  78888874

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.93  E-value=1.1e-22  Score=202.16  Aligned_cols=268  Identities=12%  Similarity=0.134  Sum_probs=210.8

Q ss_pred             CCeEEEEECCCCCEEEEEeC-------CCeEEEEEcCC-ceeEeeccCCCCEEEEEeCCCCCEEEE-eeCCCcEEEEECC
Q 008496          275 KDVTTLDWNGEGTLLATGSY-------DGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLT-GSCDKTAIVWDVK  345 (563)
Q Consensus       275 ~~V~~l~~s~~g~~l~sg~~-------dg~i~vw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s-~s~D~~v~iwd~~  345 (563)
                      ..+..++|+|+|+++++++.       ++.|.+||... .....+.. ...+.+++|+|+|++++. ...++.|.+||+.
T Consensus        41 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~  119 (353)
T 3vgz_A           41 KGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN-DLKPFGATINNTTQTLWFGNTVNSAVTAIDAK  119 (353)
T ss_dssp             SSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE-SSCCCSEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             cCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec-CCCcceEEECCCCCEEEEEecCCCEEEEEeCC
Confidence            45789999999999888875       46899999764 44444443 344678999999996654 5557999999999


Q ss_pred             CCceeEEeeecccC---------eEEEecCCC-c-eEEEE-eCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEE
Q 008496          346 TEEWKQQFEFHSGP---------TLDVDWRNN-V-SFATS-STDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLL  413 (563)
Q Consensus       346 ~~~~~~~~~~~~~~---------~~~~~~~~~-~-~~~~~-~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l  413 (563)
                      +++....+..+...         +..+.|.++ . .+++. +.++.|++|+..+.+.+..+..+...+.+++|+|+++.|
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l  199 (353)
T 3vgz_A          120 TGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRL  199 (353)
T ss_dssp             TCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEE
T ss_pred             CCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEE
Confidence            99988777664322         455666543 2 34444 357899999999888888887666678899999999999


Q ss_pred             EEEeCCCcEEEEeCCCCceeeeecc----cCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecC
Q 008496          414 ASCSDDVTAKIWNMKQDKYVHDLRE----HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNG  489 (563)
Q Consensus       414 as~s~dg~i~iwd~~~~~~~~~~~~----~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~  489 (563)
                      ++++.++.|.+||..+++.+..+..    +...+..++|+|++.        .++++...++.|.+||+.+++.+..+..
T Consensus       200 ~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~--------~l~~~~~~~~~v~~~d~~~~~~~~~~~~  271 (353)
T 3vgz_A          200 YTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQ--------RAFITDSKAAEVLVVDTRNGNILAKVAA  271 (353)
T ss_dssp             EEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTT--------EEEEEESSSSEEEEEETTTCCEEEEEEC
T ss_pred             EEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCC--------EEEEEeCCCCEEEEEECCCCcEEEEEEc
Confidence            9999999999999999988776654    455678899999875        3455555669999999999998877764


Q ss_pred             CCCCEEEEEEcCCCCEEEEEe-CCCcEEEEecCCCeeEEEEecCCCEEEEEEcCCCCEEEEEECC
Q 008496          490 HREPVYSLAFSPTGEYLASGS-LDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFAN  553 (563)
Q Consensus       490 h~~~i~~l~~spdg~~lasgs-~dg~v~iw~~~~~~~~~~~~~~~~i~~l~w~~~g~~la~~~~~  553 (563)
                      .. + ..++|+|||+++++++ .++.|.+||+.+++++..+.....+..++|+|+|++|+++..+
T Consensus       272 ~~-~-~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~  334 (353)
T 3vgz_A          272 PE-S-LAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPTHPNSLALSADGKTLYVSVKQ  334 (353)
T ss_dssp             SS-C-CCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECCSEEEEEEECTTSCEEEEEEEC
T ss_pred             CC-C-ceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecCCCCCeEEEcCCCCEEEEEEcc
Confidence            43 2 5799999999665555 6899999999999999988877788999999999988777655

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.93  E-value=9.6e-23  Score=200.96  Aligned_cols=270  Identities=11%  Similarity=0.108  Sum_probs=198.6

Q ss_pred             ECCCC-CEEEEEeCCCeEEEEEcC-CceeEeeccCCCCEEEEEeCCCCCEEEEeeC-CCcEEEEECCCCce-eEEeeecc
Q 008496          282 WNGEG-TLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSC-DKTAIVWDVKTEEW-KQQFEFHS  357 (563)
Q Consensus       282 ~s~~g-~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~-D~~v~iwd~~~~~~-~~~~~~~~  357 (563)
                      |.+++ ..+++++.++.|++||.. ++....+..+..++ .++|+|+|+++++++. ++.|.+||+.+++. ...+..+.
T Consensus         5 ~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~   83 (331)
T 3u4y_A            5 FQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQ   83 (331)
T ss_dssp             --CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECS
T ss_pred             EcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCC
Confidence            44444 457788889999999976 55555666666667 9999999997776665 88999999999887 66666666


Q ss_pred             cCeEEEecCCCce-EEEEeCC-C--eEEEEEcCCCcceeeecCCCcceeEEEECCCCCE-EEEEeCCCc-EEEEeCCCCc
Q 008496          358 GPTLDVDWRNNVS-FATSSTD-N--MIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSL-LASCSDDVT-AKIWNMKQDK  431 (563)
Q Consensus       358 ~~~~~~~~~~~~~-~~~~~~d-~--~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~-las~s~dg~-i~iwd~~~~~  431 (563)
                      .+...+.|.++.. ++++..+ +  .|++|++...+.+..+..+ ....+++|+|+|++ ++++..++. |.+|++....
T Consensus        84 ~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g  162 (331)
T 3u4y_A           84 SSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGIAISPNGNGLILIDRSSANTVRRFKIDADG  162 (331)
T ss_dssp             SCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTC
T ss_pred             CCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccceEECCCCCEEEEEecCCCceEEEEEECCCC
Confidence            6655477765544 4443333 2  8999999988887777644 34689999999985 455566688 9999987644


Q ss_pred             eee----eecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeE---EEEecCCCCCEEEEEEcCCCC
Q 008496          432 YVH----DLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKL---LYSLNGHREPVYSLAFSPTGE  504 (563)
Q Consensus       432 ~~~----~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~---~~~~~~h~~~i~~l~~spdg~  504 (563)
                      .+.    ...........++|+|++.        .+++++..++.|++||+.+++.   +..+..+ ..+..++|+|||+
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~spdg~--------~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~-~~~~~~~~spdg~  233 (331)
T 3u4y_A          163 VLFDTGQEFISGGTRPFNITFTPDGN--------FAFVANLIGNSIGILETQNPENITLLNAVGTN-NLPGTIVVSRDGS  233 (331)
T ss_dssp             CEEEEEEEEECSSSSEEEEEECTTSS--------EEEEEETTTTEEEEEECSSTTSCEEEEEEECS-SCCCCEEECTTSS
T ss_pred             cEeecCCccccCCCCccceEECCCCC--------EEEEEeCCCCeEEEEECCCCcccceeeeccCC-CCCceEEECCCCC
Confidence            331    1123345678999999875        3566677899999999998887   7777644 5668999999999


Q ss_pred             EEEEEe-CCCcEEEEecCCCee--EEEEecC--------CCEEEEEEcCCCCEEEEEEC-CCeEEEEEee
Q 008496          505 YLASGS-LDKSMHIWSLKEGKI--VKTYTGN--------GGIFEVCWNKEGDKIAACFA-NHTVCVLDFR  562 (563)
Q Consensus       505 ~lasgs-~dg~v~iw~~~~~~~--~~~~~~~--------~~i~~l~w~~~g~~la~~~~-~~~v~v~~~~  562 (563)
                      +|++++ .++.|.+||+.++++  +..+...        .....++|+|||++|+++.. ++.|.|||+.
T Consensus       234 ~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~  303 (331)
T 3u4y_A          234 TVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTIS  303 (331)
T ss_dssp             EEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred             EEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEec
Confidence            776654 578899999999987  4444322        12245899999998876655 5699999974

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.93  E-value=8.2e-24  Score=204.28  Aligned_cols=253  Identities=16%  Similarity=0.203  Sum_probs=191.7

Q ss_pred             EEeCCCeEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCC-CceeEEeeecc-cCeEEEecCCC
Q 008496          291 TGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKT-EEWKQQFEFHS-GPTLDVDWRNN  368 (563)
Q Consensus       291 sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~-~~~~~~~~~~~-~~~~~~~~~~~  368 (563)
                      +++.++.|++|+..+.....+..|...|.+++|+|+|++|++++ ++.|.+||+.+ ++.......+. ..+.++.|.++
T Consensus        17 ~~~~~~~i~~~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spd   95 (297)
T 2ojh_A           17 GGSMRSSIEIFNIRTRKMRVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPD   95 (297)
T ss_dssp             -CCCCEEEEEEETTTTEEEEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTT
T ss_pred             CCCcceeEEEEeCCCCceeeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCC
Confidence            34678999999988776667778999999999999999999876 88999999998 77766554442 45667788765


Q ss_pred             c-eEEEEe--C--CCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEE-EEeCCCcEEEEeCCC-CceeeeecccCC
Q 008496          369 V-SFATSS--T--DNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLA-SCSDDVTAKIWNMKQ-DKYVHDLREHSK  441 (563)
Q Consensus       369 ~-~~~~~~--~--d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~la-s~s~dg~i~iwd~~~-~~~~~~~~~~~~  441 (563)
                      . .++.++  .  ...|+.++..... ...+..+. .+.+++|+|+++.|+ +++.|+.++||++.. ......+..+..
T Consensus        96 g~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~-~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  173 (297)
T 2ojh_A           96 GALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKNL-PSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEG  173 (297)
T ss_dssp             SSEEEEEECTTTSSCEEEEEETTCCC-CEECCSSS-SEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSS
T ss_pred             CCEEEEEEeCCCCcceEEEEECCCCc-eEEeecCC-CccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCC
Confidence            4 455555  2  3456666655544 33444333 488999999999877 788899999998632 233456667888


Q ss_pred             CEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCC-CCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCC--------
Q 008496          442 EIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVE-LGKLLYSLNGHREPVYSLAFSPTGEYLASGSLD--------  512 (563)
Q Consensus       442 ~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~-~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~d--------  512 (563)
                      .+.++.|+|++.        .+++++..++.++||++. .+..+..+..|...+.+++|+|+|++|++++.+        
T Consensus       174 ~~~~~~~s~dg~--------~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~  245 (297)
T 2ojh_A          174 RNDGPDYSPDGR--------WIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPR  245 (297)
T ss_dssp             CEEEEEECTTSS--------EEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCS
T ss_pred             ccccceECCCCC--------EEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccc
Confidence            899999999875        344455569999999986 456667788888889999999999999988766        


Q ss_pred             ---CcEEEEecCCCeeEEEE---ecCCCEEEEEEcCCCCEEEEEECCC
Q 008496          513 ---KSMHIWSLKEGKIVKTY---TGNGGIFEVCWNKEGDKIAACFANH  554 (563)
Q Consensus       513 ---g~v~iw~~~~~~~~~~~---~~~~~i~~l~w~~~g~~la~~~~~~  554 (563)
                         +.|.+||+.+++.....   .....+..++|+|+|+.|++++.+.
T Consensus       246 ~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~  293 (297)
T 2ojh_A          246 DLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP  293 (297)
T ss_dssp             SEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred             cCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence               56999999988754333   2345688899999999999886653

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.92  E-value=1.8e-22  Score=199.58  Aligned_cols=292  Identities=12%  Similarity=0.175  Sum_probs=196.2

Q ss_pred             EEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEEeCC-CeEEEEEcC---
Q 008496          229 LLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYD-GQARIWSTN---  304 (563)
Q Consensus       229 ~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~d-g~i~vw~~~---  304 (563)
                      ++++++.|+.|++|++.....        ..  .+...     .+...+.+++|+|+|++|++++.+ +.|++|+.+   
T Consensus         7 l~~~~~~~~~v~~~~~~~~~~--------~~--~~~~~-----~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~   71 (343)
T 1ri6_A            7 VYIASPESQQIHVWNLNHEGA--------LT--LTQVV-----DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDD   71 (343)
T ss_dssp             EEEEEGGGTEEEEEEECTTSC--------EE--EEEEE-----ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTT
T ss_pred             EEEeCCCCCeEEEEEECCCCc--------EE--EeeeE-----ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCC
Confidence            455557899999999853110        00  11111     123467889999999999998887 999999986   


Q ss_pred             Ccee--EeeccCCCCEEEEEeCCCCCEEEEeeC-CCcEEEEECC---CCceeEEeeecccCeEEEecCCCc-eEEEEe-C
Q 008496          305 GDLK--CTLSKHKGPIFSLKWNKKGDYLLTGSC-DKTAIVWDVK---TEEWKQQFEFHSGPTLDVDWRNNV-SFATSS-T  376 (563)
Q Consensus       305 ~~~~--~~~~~h~~~V~~l~~~~~~~~l~s~s~-D~~v~iwd~~---~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~  376 (563)
                      +...  ..+..+. .+..++|+|++++|++++. ++.|.+||+.   +......+... ..+..+.|.++. .+++++ .
T Consensus        72 ~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~  149 (343)
T 1ri6_A           72 GALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANISPDNRTLWVPALK  149 (343)
T ss_dssp             CCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEECTTSSEEEEEEGG
T ss_pred             CceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCC-CCceEEEECCCCCEEEEecCC
Confidence            2322  2344333 7789999999998876665 8899999994   33333333322 345667776553 344444 8


Q ss_pred             CCeEEEEEcCC-Cccee----eecC-CCcceeEEEECCCCCEEEE-EeCCCcEEEEeCCC--Cce--eeeec---cc---
Q 008496          377 DNMIYVCKIGE-NRPIK----TFAG-HQGEVNCVKWDPTGSLLAS-CSDDVTAKIWNMKQ--DKY--VHDLR---EH---  439 (563)
Q Consensus       377 d~~i~~~~~~~-~~~~~----~~~~-h~~~i~~~~~~~~~~~las-~s~dg~i~iwd~~~--~~~--~~~~~---~~---  439 (563)
                      ++.|++|++.. .+...    .+.. ....+.+++|+|+++++++ +..++.|++|++..  +..  ...+.   ..   
T Consensus       150 ~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~  229 (343)
T 1ri6_A          150 QDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSD  229 (343)
T ss_dssp             GTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCS
T ss_pred             CCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccc
Confidence            89999999986 43321    2232 2346889999999997654 45799999999953  332  22221   11   


Q ss_pred             CCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCC--C--CeEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCCc
Q 008496          440 SKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVE--L--GKLLYSLNGHREPVYSLAFSPTGEYLASGS-LDKS  514 (563)
Q Consensus       440 ~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~--~--~~~~~~~~~h~~~i~~l~~spdg~~lasgs-~dg~  514 (563)
                      ...+..++|+|++.        .+++++..++.|++||+.  .  .+.+..+..+.. +.+++|+|+|++|++++ .++.
T Consensus       230 ~~~~~~i~~s~dg~--------~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~  300 (343)
T 1ri6_A          230 TRWAADIHITPDGR--------HLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHH  300 (343)
T ss_dssp             CCCEEEEEECTTSS--------EEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCE
T ss_pred             cCCccceEECCCCC--------EEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEecCCCCe
Confidence            23567899999875        355577789999999998  3  344555554444 88999999999988887 6899


Q ss_pred             EEEEe--cCCCe--eEEEEecCCCEEEEEEcCCCCE
Q 008496          515 MHIWS--LKEGK--IVKTYTGNGGIFEVCWNKEGDK  546 (563)
Q Consensus       515 v~iw~--~~~~~--~~~~~~~~~~i~~l~w~~~g~~  546 (563)
                      |.+|+  ..+++  .+..+........++|.++-+.
T Consensus       301 v~v~~~d~~~g~~~~~~~~~~g~~p~~i~~~~~~~~  336 (343)
T 1ri6_A          301 ISVYEIVGEQGLLHEKGRYAVGQGPMWVVVNAHEGG  336 (343)
T ss_dssp             EEEEEEETTTTEEEEEEEEECSSSCCEEEEEEEC--
T ss_pred             EEEEEEcCCCceeeEccccccCCCCeeEEEEcccCC
Confidence            99994  45664  3455555456678888876543

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.92  E-value=1.8e-22  Score=199.62  Aligned_cols=265  Identities=11%  Similarity=0.187  Sum_probs=189.2

Q ss_pred             EEEEEeCCCeEEEEEcC--Ccee-EeeccCCCCEEEEEeCCCCCEEEEeeCC-CcEEEEECC--CCcee--EEeeecccC
Q 008496          288 LLATGSYDGQARIWSTN--GDLK-CTLSKHKGPIFSLKWNKKGDYLLTGSCD-KTAIVWDVK--TEEWK--QQFEFHSGP  359 (563)
Q Consensus       288 ~l~sg~~dg~i~vw~~~--~~~~-~~~~~h~~~V~~l~~~~~~~~l~s~s~D-~~v~iwd~~--~~~~~--~~~~~~~~~  359 (563)
                      ++++++.++.|++|+.+  +... .....|...+.+++|+|+|++|++++.+ +.|.+|++.  ++...  ..+.... .
T Consensus         7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~   85 (343)
T 1ri6_A            7 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-S   85 (343)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-C
T ss_pred             EEEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-C
Confidence            44555789999999985  3322 2234577788999999999999988887 999999987  55543  3333333 5


Q ss_pred             eEEEecCCCce-E-EEEeCCCeEEEEEcC---CCcceeeecCCCcceeEEEECCCCCEEEEEe-CCCcEEEEeCCC-Cce
Q 008496          360 TLDVDWRNNVS-F-ATSSTDNMIYVCKIG---ENRPIKTFAGHQGEVNCVKWDPTGSLLASCS-DDVTAKIWNMKQ-DKY  432 (563)
Q Consensus       360 ~~~~~~~~~~~-~-~~~~~d~~i~~~~~~---~~~~~~~~~~h~~~i~~~~~~~~~~~las~s-~dg~i~iwd~~~-~~~  432 (563)
                      +..+.|.++.. + +++..++.|.+|++.   ....+..+..+ ..+.+++|+|++++|++++ .++.|++||+.+ ++.
T Consensus        86 ~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~  164 (343)
T 1ri6_A           86 LTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHL  164 (343)
T ss_dssp             CSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCE
T ss_pred             CcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCC-CCceEEEECCCCCEEEEecCCCCEEEEEEecCCCce
Confidence            66777765543 4 444568899999994   33444555443 3588999999999888777 899999999987 543


Q ss_pred             ee----eecc-cCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC--CeE--EEEec----CC--CCCEEEE
Q 008496          433 VH----DLRE-HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL--GKL--LYSLN----GH--REPVYSL  497 (563)
Q Consensus       433 ~~----~~~~-~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~--~~~--~~~~~----~h--~~~i~~l  497 (563)
                      ..    .+.. ....+..++|+|++.        .+++++..++.|++|++..  ++.  ...+.    ++  ...+..+
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~pdg~--------~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i  236 (343)
T 1ri6_A          165 VAQDPAEVTTVEGAGPRHMVFHPNEQ--------YAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADI  236 (343)
T ss_dssp             EEEEEEEEECSTTCCEEEEEECTTSS--------EEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEE
T ss_pred             eeecccccccCCCCCcceEEECCCCC--------EEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccce
Confidence            22    2222 334678899999875        3555666899999999953  432  22222    11  2356789


Q ss_pred             EEcCCCCEEE-EEeCCCcEEEEecC--C--CeeEEEEecCCCEEEEEEcCCCCEEEEEE-CCCeEEEEEee
Q 008496          498 AFSPTGEYLA-SGSLDKSMHIWSLK--E--GKIVKTYTGNGGIFEVCWNKEGDKIAACF-ANHTVCVLDFR  562 (563)
Q Consensus       498 ~~spdg~~la-sgs~dg~v~iw~~~--~--~~~~~~~~~~~~i~~l~w~~~g~~la~~~-~~~~v~v~~~~  562 (563)
                      +|+|||++|+ ++..++.|.+|++.  +  .+.+..+.....+..++|+|+|+.|+++. .++.+.||++.
T Consensus       237 ~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d  307 (343)
T 1ri6_A          237 HITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIV  307 (343)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred             EECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCccceEEECCCCCEEEEecCCCCeEEEEEEc
Confidence            9999998887 45578999999998  3  34555565555688999999999988887 57899999664

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.92  E-value=3.8e-22  Score=196.69  Aligned_cols=276  Identities=9%  Similarity=0.056  Sum_probs=196.0

Q ss_pred             EECCCC-CEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEEeC-CCeEE
Q 008496          222 AWSPAG-SLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSY-DGQAR  299 (563)
Q Consensus       222 ~~sp~~-~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~-dg~i~  299 (563)
                      .|.+++ .++++++.++.|++||+.+++..             ....    .....+ .++|+|+|+++++++. ++.|+
T Consensus         4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~-------------~~~~----~~~~~~-~~~~s~dg~~l~~~~~~~~~i~   65 (331)
T 3u4y_A            4 MFQTTSNFGIVVEQHLRRISFFSTDTLEIL-------------NQIT----LGYDFV-DTAITSDCSNVVVTSDFCQTLV   65 (331)
T ss_dssp             ---CCCCEEEEEEGGGTEEEEEETTTCCEE-------------EEEE----CCCCEE-EEEECSSSCEEEEEESTTCEEE
T ss_pred             eEcCCCCEEEEEecCCCeEEEEeCccccee-------------eeEE----ccCCcc-eEEEcCCCCEEEEEeCCCCeEE
Confidence            456654 45788889999999998765421             1111    113345 9999999997776665 89999


Q ss_pred             EEEcCC-ce-eEeeccCCCCEEEEEeCCCCCEEEEeeCCC---cEEEEECCCCceeEEeeecccCeEEEecCCCc--eEE
Q 008496          300 IWSTNG-DL-KCTLSKHKGPIFSLKWNKKGDYLLTGSCDK---TAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNV--SFA  372 (563)
Q Consensus       300 vw~~~~-~~-~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~---~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~  372 (563)
                      +|+... .. ...+..+..+..+++|+|+|++|+++..++   .|.+||+.+++....+.... ....+.|.++.  .++
T Consensus        66 ~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~-~~~~~~~spdg~~l~~  144 (331)
T 3u4y_A           66 QIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPY-DAVGIAISPNGNGLIL  144 (331)
T ss_dssp             EEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCT-TEEEEEECTTSSCEEE
T ss_pred             EEECCCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCC-CccceEECCCCCEEEE
Confidence            999864 44 556666777766699999999999665553   89999999998877766543 34677776653  455


Q ss_pred             EEeCCCe-EEEEEcCCCccee----eecCCCcceeEEEECCCCCEE-EEEeCCCcEEEEeCCCCce---eeeecccCCCE
Q 008496          373 TSSTDNM-IYVCKIGENRPIK----TFAGHQGEVNCVKWDPTGSLL-ASCSDDVTAKIWNMKQDKY---VHDLREHSKEI  443 (563)
Q Consensus       373 ~~~~d~~-i~~~~~~~~~~~~----~~~~h~~~i~~~~~~~~~~~l-as~s~dg~i~iwd~~~~~~---~~~~~~~~~~i  443 (563)
                      +...++. |.+|++.....+.    ........+.+++|+|+|+++ +++..++.|++||+.+++.   +..+.. ...+
T Consensus       145 ~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~-~~~~  223 (331)
T 3u4y_A          145 IDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGT-NNLP  223 (331)
T ss_dssp             EEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEEC-SSCC
T ss_pred             EecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccC-CCCC
Confidence            6666677 9999987544321    111234457899999999955 5555789999999998887   666654 3566


Q ss_pred             EEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeE--EEEecCC----CCC---EEEEEEcCCCCEEEEEe-CCC
Q 008496          444 YTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKL--LYSLNGH----REP---VYSLAFSPTGEYLASGS-LDK  513 (563)
Q Consensus       444 ~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~--~~~~~~h----~~~---i~~l~~spdg~~lasgs-~dg  513 (563)
                      ..++|+|++.        .++++...++.|.+||+.+++.  +..+..+    ..+   +..++|+|||++|++++ .++
T Consensus       224 ~~~~~spdg~--------~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~  295 (331)
T 3u4y_A          224 GTIVVSRDGS--------TVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISR  295 (331)
T ss_dssp             CCEEECTTSS--------EEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTT
T ss_pred             ceEEECCCCC--------EEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCC
Confidence            7899999875        3445555688999999999887  4443322    222   35589999999886655 467


Q ss_pred             cEEEEecCCCee
Q 008496          514 SMHIWSLKEGKI  525 (563)
Q Consensus       514 ~v~iw~~~~~~~  525 (563)
                      .|.+||+.+..+
T Consensus       296 ~v~v~d~~~~~~  307 (331)
T 3u4y_A          296 ELKVFTISGKVV  307 (331)
T ss_dssp             EEEEEETTSCEE
T ss_pred             cEEEEEecCCcc
Confidence            999999986543

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.91  E-value=7.8e-23  Score=197.39  Aligned_cols=241  Identities=18%  Similarity=0.279  Sum_probs=178.2

Q ss_pred             CceeEecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCC-CCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECC
Q 008496          206 SDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIAD-GTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG  284 (563)
Q Consensus       206 ~~~~~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~  284 (563)
                      .....+..|...|.+++|+|++++|++++ ++.|++|++.+ +....             ...   ......|.+++|+|
T Consensus        32 ~~~~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~-------------~~~---~~~~~~~~~~~~sp   94 (297)
T 2ojh_A           32 RKMRVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEK-------------VDT---GFATICNNDHGISP   94 (297)
T ss_dssp             TEEEEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEE-------------CCC---TTCCCBCSCCEECT
T ss_pred             CceeeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceE-------------ecc---ccccccccceEECC
Confidence            34455667889999999999999999986 88999999876 43211             000   11235678899999


Q ss_pred             CCCEEEEEeC--CCeEEEE--EcCCceeEeeccCCCCEEEEEeCCCCCEEE-EeeCCCcEEEEECCCCceeEEeeecccC
Q 008496          285 EGTLLATGSY--DGQARIW--STNGDLKCTLSKHKGPIFSLKWNKKGDYLL-TGSCDKTAIVWDVKTEEWKQQFEFHSGP  359 (563)
Q Consensus       285 ~g~~l~sg~~--dg~i~vw--~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~-s~s~D~~v~iwd~~~~~~~~~~~~~~~~  359 (563)
                      +|++|++++.  ++..+||  +..+.....+..+. .+..++|+|++++|+ +++.|+.+++|++....           
T Consensus        95 dg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~-----------  162 (297)
T 2ojh_A           95 DGALYAISDKVEFGKSAIYLLPSTGGTPRLMTKNL-PSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDS-----------  162 (297)
T ss_dssp             TSSEEEEEECTTTSSCEEEEEETTCCCCEECCSSS-SEEEEEECTTSSEEEEEEEETTEEEEEEEETTT-----------
T ss_pred             CCCEEEEEEeCCCCcceEEEEECCCCceEEeecCC-CccceEECCCCCEEEEEECCCCceEEEEEECCC-----------
Confidence            9999999993  3455555  55554444554444 489999999999887 78889999999753211           


Q ss_pred             eEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEe-CCCcEEEEeCC-CCceeeeec
Q 008496          360 TLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCS-DDVTAKIWNMK-QDKYVHDLR  437 (563)
Q Consensus       360 ~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s-~dg~i~iwd~~-~~~~~~~~~  437 (563)
                                                   .....+..|...+.+++|+|++++|+.++ .++.++||++. .+..+..+.
T Consensus       163 -----------------------------~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~  213 (297)
T 2ojh_A          163 -----------------------------GVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERIT  213 (297)
T ss_dssp             -----------------------------CCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECC
T ss_pred             -----------------------------CcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEe
Confidence                                         01122334667789999999999887766 59999999986 455667777


Q ss_pred             ccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCC-----------CeEEEEeCCCCeE--EEEecCCCCCEEEEEEcCCCC
Q 008496          438 EHSKEIYTIRWSPTGSGTNNPNQQLILASASFD-----------STVKLWDVELGKL--LYSLNGHREPVYSLAFSPTGE  504 (563)
Q Consensus       438 ~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~d-----------g~i~iwd~~~~~~--~~~~~~h~~~i~~l~~spdg~  504 (563)
                      .|...+..+.|+|++.         +|++++.+           +.|++||+.+++.  +..+.+|...|.+++|+|||+
T Consensus       214 ~~~~~~~~~~~s~dg~---------~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~  284 (297)
T 2ojh_A          214 DSAYGDWFPHPSPSGD---------KVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGD  284 (297)
T ss_dssp             CCSEEEEEEEECTTSS---------EEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSS
T ss_pred             cCCcccCCeEECCCCC---------EEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCC
Confidence            7888899999999885         45555544           5799999988754  455557888899999999999


Q ss_pred             EEEEEeCCC
Q 008496          505 YLASGSLDK  513 (563)
Q Consensus       505 ~lasgs~dg  513 (563)
                      +|++++.+.
T Consensus       285 ~l~~~~~~~  293 (297)
T 2ojh_A          285 EFAYVRYFP  293 (297)
T ss_dssp             EEEEEEECC
T ss_pred             EEEEEEecc
Confidence            998887653

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.91  E-value=1.3e-23  Score=230.15  Aligned_cols=274  Identities=13%  Similarity=0.177  Sum_probs=198.1

Q ss_pred             eEEEEECCCCCEEEEEeCCCeEEEEEcCC-ceeEeeccCCC---CEEEEEeCCCCCEEEEeeCC---------CcEEEEE
Q 008496          277 VTTLDWNGEGTLLATGSYDGQARIWSTNG-DLKCTLSKHKG---PIFSLKWNKKGDYLLTGSCD---------KTAIVWD  343 (563)
Q Consensus       277 V~~l~~s~~g~~l~sg~~dg~i~vw~~~~-~~~~~~~~h~~---~V~~l~~~~~~~~l~s~s~D---------~~v~iwd  343 (563)
                      +.+++|+|||+++++ +.||.|++|+..+ .....+..|..   .|.+++|+|+|++|++++.+         +.+.+||
T Consensus        19 ~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d   97 (723)
T 1xfd_A           19 DPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSK   97 (723)
T ss_dssp             CCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEE
T ss_pred             ccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEE
Confidence            567899999998776 7899999999764 45555666654   48999999999999998775         6788999


Q ss_pred             CCCCceeEEeee---cccCeEEEecCCCc-eEEEEeCCCeEEEEEcCCCcceeeecCCCcce------------------
Q 008496          344 VKTEEWKQQFEF---HSGPTLDVDWRNNV-SFATSSTDNMIYVCKIGENRPIKTFAGHQGEV------------------  401 (563)
Q Consensus       344 ~~~~~~~~~~~~---~~~~~~~~~~~~~~-~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i------------------  401 (563)
                      +.+++. ..+..   +...+..+.|.++. .++.++ ++.|++|++..+........+...+                  
T Consensus        98 ~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~  175 (723)
T 1xfd_A           98 IPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTH  175 (723)
T ss_dssp             SSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSS
T ss_pred             CCCCce-EeccCCccccccccccEECCCCCEEEEEE-CCeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCc
Confidence            998876 22322   22235677887665 445444 4899999998877666555544333                  


Q ss_pred             eEEEECCCCCEEEEEeCCC----------------------------------cEEEEeCCCCceeeeeccc------CC
Q 008496          402 NCVKWDPTGSLLASCSDDV----------------------------------TAKIWNMKQDKYVHDLREH------SK  441 (563)
Q Consensus       402 ~~~~~~~~~~~las~s~dg----------------------------------~i~iwd~~~~~~~~~~~~~------~~  441 (563)
                      .+++|+|||+.|++++.|+                                  .|++||+.+++....+..+      ..
T Consensus       176 ~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~  255 (723)
T 1xfd_A          176 IAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREY  255 (723)
T ss_dssp             EEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSE
T ss_pred             ceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccc
Confidence            7899999999999987653                                  7999999888765555543      56


Q ss_pred             CEEEEEEccCCCCCCCCCCcEEEEEEe----CCCeEEEEeCCCCeEEEEecC-CCCCEE----EEEEcCCCCEEEE--Ee
Q 008496          442 EIYTIRWSPTGSGTNNPNQQLILASAS----FDSTVKLWDVELGKLLYSLNG-HREPVY----SLAFSPTGEYLAS--GS  510 (563)
Q Consensus       442 ~i~~~~~~p~~~~~~~~~~~~~l~s~s----~dg~i~iwd~~~~~~~~~~~~-h~~~i~----~l~~spdg~~las--gs  510 (563)
                      .+..+.|+|+|.         +|++.+    .+..|++||+.++++...+.. +...+.    .++|||||++|+.  +.
T Consensus       256 ~~~~~~~SpDg~---------~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~  326 (723)
T 1xfd_A          256 YITMVKWATSTK---------VAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAI  326 (723)
T ss_dssp             EEEEEEESSSSE---------EEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEE
T ss_pred             eeEEEEEeCCCe---------EEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEec
Confidence            789999999885         454443    236799999999887665543 333343    7899999998775  45


Q ss_pred             CCC------cEEEEe-cCCCe--eEEEEe-cCCCEEE-EEEcCCCCEEEEEECC---CeEEEEEee
Q 008496          511 LDK------SMHIWS-LKEGK--IVKTYT-GNGGIFE-VCWNKEGDKIAACFAN---HTVCVLDFR  562 (563)
Q Consensus       511 ~dg------~v~iw~-~~~~~--~~~~~~-~~~~i~~-l~w~~~g~~la~~~~~---~~v~v~~~~  562 (563)
                      .++      .|.+|| ..++.  ....+. +...+.. ++|+|||+.|++...+   +.+.||++.
T Consensus       327 ~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~  392 (723)
T 1xfd_A          327 PQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSAN  392 (723)
T ss_dssp             CCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEEC
T ss_pred             ccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEe
Confidence            677      577777 34444  033333 3344554 6999999999877665   678888874

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.91  E-value=3.9e-23  Score=220.40  Aligned_cols=260  Identities=13%  Similarity=0.093  Sum_probs=197.3

Q ss_pred             CCeEEEEECCCCCEEEEEeC-CCeEEEEEcCCceeEeeccCC-CCEEEEEeCCCCCEEEEeeC---CCcEEEEECCC---
Q 008496          275 KDVTTLDWNGEGTLLATGSY-DGQARIWSTNGDLKCTLSKHK-GPIFSLKWNKKGDYLLTGSC---DKTAIVWDVKT---  346 (563)
Q Consensus       275 ~~V~~l~~s~~g~~l~sg~~-dg~i~vw~~~~~~~~~~~~h~-~~V~~l~~~~~~~~l~s~s~---D~~v~iwd~~~---  346 (563)
                      .+|.+++|+|||+.|++++. ||.++||++++.....+..|. ..|.++.|+|+ +.+++++.   +....+|.+..   
T Consensus        22 ~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~  100 (582)
T 3o4h_A           22 VEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRP  100 (582)
T ss_dssp             SCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTST
T ss_pred             cchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccCC
Confidence            46999999999999999887 999999998877666676666 68999999999 67776665   45566665433   


Q ss_pred             CceeEEeeec-ccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCC----Cc
Q 008496          347 EEWKQQFEFH-SGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDD----VT  421 (563)
Q Consensus       347 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~d----g~  421 (563)
                      +... .+... ...+..+.+..+..++++..++.+.+|++.++++......+.   .+++|+|||++||+++.+    +.
T Consensus       101 g~~~-~l~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~~~~~~~~~~  176 (582)
T 3o4h_A          101 GEEQ-RLEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG---FGFVSDIRGDLIAGLGFFGGGRVS  176 (582)
T ss_dssp             TCCE-ECTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS---CEEEEEEETTEEEEEEEEETTEEE
T ss_pred             Cccc-cccCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC---ceEEECCCCCEEEEEEEcCCCCeE
Confidence            2222 22111 112334444444444444444555599998776554443332   789999999999988877    78


Q ss_pred             EEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCC--eEEEEeCCCCeEEEEecCCCCCEEEEE-
Q 008496          422 AKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDS--TVKLWDVELGKLLYSLNGHREPVYSLA-  498 (563)
Q Consensus       422 i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg--~i~iwd~~~~~~~~~~~~h~~~i~~l~-  498 (563)
                      |++||+.+++.. .+..|...+..++|+|+|.         .|++++.++  .|++||+.+++.. .+.+|...+..++ 
T Consensus       177 i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~---------~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~  245 (582)
T 3o4h_A          177 LFTSNLSSGGLR-VFDSGEGSFSSASISPGMK---------VTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRP  245 (582)
T ss_dssp             EEEEETTTCCCE-EECCSSCEEEEEEECTTSC---------EEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCC
T ss_pred             EEEEcCCCCCce-EeecCCCccccceECCCCC---------EEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhh
Confidence            999999887754 6778888899999999986         567888888  8999999998887 7777877777777 


Q ss_pred             -------EcCCCCEEEEEeCCCcEEEEecCCCeeEEEEecCCCEEEEEEcCCCCEEEEEECCCe
Q 008496          499 -------FSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHT  555 (563)
Q Consensus       499 -------~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~~~~i~~l~w~~~g~~la~~~~~~~  555 (563)
                             |||||.++++++.|+++++|++  |+....  ..+.+.+++|+ +|+.+++++.+.+
T Consensus       246 ~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~~--~~~~v~~~~~s-dg~~l~~~s~~~~  304 (582)
T 3o4h_A          246 TAITWLGYLPDGRLAVVARREGRSAVFID--GERVEA--PQGNHGRVVLW-RGKLVTSHTSLST  304 (582)
T ss_dssp             SEEEEEEECTTSCEEEEEEETTEEEEEET--TEEECC--CSSEEEEEEEE-TTEEEEEEEETTE
T ss_pred             ccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeecc--CCCceEEEEec-CCEEEEEEcCCCC
Confidence                   9999999999999999999999  776652  33568899999 9998888777644

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.91  E-value=1.8e-22  Score=220.50  Aligned_cols=278  Identities=10%  Similarity=0.102  Sum_probs=201.4

Q ss_pred             CceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEEeCC
Q 008496          216 SEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYD  295 (563)
Q Consensus       216 ~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~d  295 (563)
                      ..|.+++|||+ ..++.+ .|+.+++||+.++..           .   ...    .....+.+++|||||++|+++ .+
T Consensus        82 ~~v~~~~~spd-~~~~~~-~~~~i~~~d~~~~~~-----------~---~l~----~~~~~~~~~~~SpdG~~la~~-~~  140 (706)
T 2z3z_A           82 FPSFRTLDAGR-GLVVLF-TQGGLVGFDMLARKV-----------T---YLF----DTNEETASLDFSPVGDRVAYV-RN  140 (706)
T ss_dssp             CCCEEEEETTT-TEEEEE-ETTEEEEEETTTTEE-----------E---EEE----CCTTCCTTCEECTTSSEEEEE-ET
T ss_pred             cCceeEEECCC-CeEEEE-ECCEEEEEECCCCce-----------E---Ecc----CCcccccCCcCCCCCCEEEEE-EC
Confidence            56899999999 655554 469999999875431           0   111    113457788999999999995 68


Q ss_pred             CeEEEEEcCC-----c-eeEeeccCCCC--------------EEEEEeCCCCCEEEEee---------------------
Q 008496          296 GQARIWSTNG-----D-LKCTLSKHKGP--------------IFSLKWNKKGDYLLTGS---------------------  334 (563)
Q Consensus       296 g~i~vw~~~~-----~-~~~~~~~h~~~--------------V~~l~~~~~~~~l~s~s---------------------  334 (563)
                      +.|++|+..+     . .......+...              +.++.|+|+|++|++++                     
T Consensus       141 ~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~  220 (706)
T 2z3z_A          141 HNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAES  220 (706)
T ss_dssp             TEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEE
T ss_pred             CeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCce
Confidence            9999999865     3 33333333333              47899999999999987                     


Q ss_pred             ------------CCCcEEEEECCCCceeEEee--ecccCeEEEecCCCce-EEEEeCCC-----eEEEEEcCCCcceeee
Q 008496          335 ------------CDKTAIVWDVKTEEWKQQFE--FHSGPTLDVDWRNNVS-FATSSTDN-----MIYVCKIGENRPIKTF  394 (563)
Q Consensus       335 ------------~D~~v~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~d~-----~i~~~~~~~~~~~~~~  394 (563)
                                  .+..|.+||+.+++......  .+...+..+.|.++.. +++++.+.     .|++|+..++.....+
T Consensus       221 ~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~  300 (706)
T 2z3z_A          221 KPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTL  300 (706)
T ss_dssp             EEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEE
T ss_pred             EEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEE
Confidence                        44679999999887654432  2344577889976654 56655554     8999999887333332


Q ss_pred             c--CCCc---ceeEEEECC--CCCEEEEEeCCCcEEEEeCC-CCceeeeecccCCCEEE-EEEccCCCCCCCCCCcEEEE
Q 008496          395 A--GHQG---EVNCVKWDP--TGSLLASCSDDVTAKIWNMK-QDKYVHDLREHSKEIYT-IRWSPTGSGTNNPNQQLILA  465 (563)
Q Consensus       395 ~--~h~~---~i~~~~~~~--~~~~las~s~dg~i~iwd~~-~~~~~~~~~~~~~~i~~-~~~~p~~~~~~~~~~~~~l~  465 (563)
                      .  .+..   .+.+++|+|  +|+++++++.|+.++||++. ++..+..+..+...+.. +.|+|++.        .+++
T Consensus       301 ~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~--------~l~~  372 (706)
T 2z3z_A          301 FVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGT--------RLYF  372 (706)
T ss_dssp             EEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSS--------EEEE
T ss_pred             EEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCC--------EEEE
Confidence            2  2222   246789999  99999999999999999876 56667777778777877 79999875        3555


Q ss_pred             EEeCCC----eEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCC----CcEEEEecCCCe
Q 008496          466 SASFDS----TVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLD----KSMHIWSLKEGK  524 (563)
Q Consensus       466 s~s~dg----~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~d----g~v~iw~~~~~~  524 (563)
                      +++.++    .|..||+.+++ +..+. |...+.+++|||||++|+.+..+    +.|++||+.+++
T Consensus       373 ~~~~~~~~~~~l~~~d~~~~~-~~~l~-~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~  437 (706)
T 2z3z_A          373 ESTEASPLERHFYCIDIKGGK-TKDLT-PESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS  437 (706)
T ss_dssp             EESSSCTTCBEEEEEETTCCC-CEESC-CSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred             EecCCCCceEEEEEEEcCCCC-ceecc-CCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence            666665    67777877765 33444 66779999999999998876433    569999998887

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.90  E-value=1.2e-21  Score=193.18  Aligned_cols=270  Identities=13%  Similarity=0.097  Sum_probs=196.9

Q ss_pred             CEEEEEeCCCeEEEEEcCC-ceeEeecc-CCC-CEEEEEeCCCCCEEE-EeeCCCcEEEEECCCCceeEEeeecc-----
Q 008496          287 TLLATGSYDGQARIWSTNG-DLKCTLSK-HKG-PIFSLKWNKKGDYLL-TGSCDKTAIVWDVKTEEWKQQFEFHS-----  357 (563)
Q Consensus       287 ~~l~sg~~dg~i~vw~~~~-~~~~~~~~-h~~-~V~~l~~~~~~~~l~-s~s~D~~v~iwd~~~~~~~~~~~~~~-----  357 (563)
                      .+|++++.++.|++||... .....+.. +.. .+..++|+|+|++++ +++.++.|.+||+.+++....+....     
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~   81 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV   81 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred             cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccccc
Confidence            4789999999999999864 44444432 221 478899999998764 55667899999999988877665422     


Q ss_pred             cCeEEEecCCCc-eEEEEe------------CCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEE
Q 008496          358 GPTLDVDWRNNV-SFATSS------------TDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKI  424 (563)
Q Consensus       358 ~~~~~~~~~~~~-~~~~~~------------~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~i  424 (563)
                      ..+..+.|.++. .++++.            .++.|++|++...+.+..+.. ...+.+++|+|++++|+++  ++.|.+
T Consensus        82 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~  158 (337)
T 1pby_B           82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL--GRDLHV  158 (337)
T ss_dssp             ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEE
T ss_pred             ccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--CCeEEE
Confidence            134456676554 444443            579999999988877776654 3457889999999988877  689999


Q ss_pred             EeCCCCceeeeecccCCCEEEEEEccCCCCCCCC--CCcE---EEEEEeCCC----------eEEEEeCCCCeEE-EEec
Q 008496          425 WNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNP--NQQL---ILASASFDS----------TVKLWDVELGKLL-YSLN  488 (563)
Q Consensus       425 wd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~--~~~~---~l~s~s~dg----------~i~iwd~~~~~~~-~~~~  488 (563)
                      ||+.+++.+..+..+... ..+.|+|++......  ....   ....+..++          .|.+||+.+++.. ..+.
T Consensus       159 ~d~~~~~~~~~~~~~~~~-~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~  237 (337)
T 1pby_B          159 MDPEAGTLVEDKPIQSWE-AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVR  237 (337)
T ss_dssp             EETTTTEEEEEECSTTTT-TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEE
T ss_pred             EECCCCcEeeeeeccccC-CCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecC
Confidence            999998877666544310 122667776421100  0000   111122222          5899999988764 3344


Q ss_pred             CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEecCCCEEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496          489 GHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLDFR  562 (563)
Q Consensus       489 ~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~~~~i~~l~w~~~g~~la~~~~~~~v~v~~~~  562 (563)
                      .+...+.+++|+|||++|+++  ++.|.+||+.+++.+..+.....+.+++|+|+|++|+++..++.|.|||++
T Consensus       238 ~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~  309 (337)
T 1pby_B          238 IMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAE  309 (337)
T ss_dssp             ECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEESBSSEEEEEETT
T ss_pred             CCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCCCceeeEEECCCCCEEEEEcCCCcEEEEECc
Confidence            566678999999999999988  789999999999998888777778999999999999999889999999974

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.90  E-value=3.5e-21  Score=196.83  Aligned_cols=253  Identities=15%  Similarity=0.164  Sum_probs=172.1

Q ss_pred             CceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEE----E
Q 008496          216 SEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLA----T  291 (563)
Q Consensus       216 ~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~----s  291 (563)
                      ..++.++|++++.++++|+.|+ +++|+..................  .............|++++|+|+|++|+    +
T Consensus        37 ~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~v~~l~~spdg~~lav~~~s  113 (434)
T 2oit_A           37 ERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIV--DKVQGLLVPMKFPIHHLALSCDNLTLSACMMS  113 (434)
T ss_dssp             SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEE--ECCCCEEECCSSCEEEEEECTTSCEEEEEEEE
T ss_pred             CCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCccccc--ccCccccccCCCcccEEEEcCCCCEEEEEEec
Confidence            4578899999999999999988 88887542111000000001110  000011112346799999999999999    7


Q ss_pred             EeCCCeEEEEEcCCc------------eeEeeccCCCCEEEEEeCCC-CCEEEEeeCCCcEEEEECCCCceeEEeeeccc
Q 008496          292 GSYDGQARIWSTNGD------------LKCTLSKHKGPIFSLKWNKK-GDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSG  358 (563)
Q Consensus       292 g~~dg~i~vw~~~~~------------~~~~~~~h~~~V~~l~~~~~-~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~  358 (563)
                      |+.|+.|+||+....            ....+.+|..+|.+++|+|+ +++|++++.||+|++||++++...        
T Consensus       114 gs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~--------  185 (434)
T 2oit_A          114 SEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKV--------  185 (434)
T ss_dssp             TTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEE--------
T ss_pred             cCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcce--------
Confidence            889999999996422            13456779999999999998 789999999999999999875321        


Q ss_pred             CeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecc
Q 008496          359 PTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLRE  438 (563)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~  438 (563)
                                                       ....+|...|.+++|+|+|++|++|+.||+|++||.+ +.....+..
T Consensus       186 ---------------------------------~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~  231 (434)
T 2oit_A          186 ---------------------------------CATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPC  231 (434)
T ss_dssp             ---------------------------------EEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECC
T ss_pred             ---------------------------------eeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccC
Confidence                                             1223577889999999999999999999999999998 444444433


Q ss_pred             c-------CCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCe------EEEEeCCCCe----EE-EEec-------CCCCC
Q 008496          439 H-------SKEIYTIRWSPTGSGTNNPNQQLILASASFDST------VKLWDVELGK----LL-YSLN-------GHREP  493 (563)
Q Consensus       439 ~-------~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~------i~iwd~~~~~----~~-~~~~-------~h~~~  493 (563)
                      |       ...+.++.|++++.        +++++++.||.      +++|++++..    .. ..+.       +.+.+
T Consensus       232 ~~~~~~~~~~~v~~v~w~~~~~--------~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~  303 (434)
T 2oit_A          232 PPFYESDHPVRVLDVLWIGTYV--------FAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQH  303 (434)
T ss_dssp             CTTCCTTSCEEEEEEEEEETTE--------EEEEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCC
T ss_pred             CcccCCCCceeEEEEEEecCce--------EEEEEccCCCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCc
Confidence            3       33799999998653        34445556643      8999998542    11 1111       23334


Q ss_pred             EEEEEEcCCCCEEEEEeC-CCcEEEEecC
Q 008496          494 VYSLAFSPTGEYLASGSL-DKSMHIWSLK  521 (563)
Q Consensus       494 i~~l~~spdg~~lasgs~-dg~v~iw~~~  521 (563)
                      -..+.+-++.+++++++. .+.|.|....
T Consensus       304 ~~~~~~l~dw~l~~v~s~~s~dv~vl~~~  332 (434)
T 2oit_A          304 HYYLSYIEEWDLVLAASAASTEVSILARQ  332 (434)
T ss_dssp             CEEEEEEGGGTEEEEEETTCSBCEEEEEC
T ss_pred             ceeeehhccCCEEEEecCCCCceeEEEec
Confidence            444444477777665554 4556666643

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.89  E-value=2.2e-21  Score=191.24  Aligned_cols=273  Identities=10%  Similarity=0.030  Sum_probs=198.3

Q ss_pred             CEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCC-CeEEEEECCCCCEE-EEEeCCCeEEEEEcC-
Q 008496          228 SLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSK-DVTTLDWNGEGTLL-ATGSYDGQARIWSTN-  304 (563)
Q Consensus       228 ~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~V~~l~~s~~g~~l-~sg~~dg~i~vw~~~-  304 (563)
                      .+|++++.++.|++||+.++..             +.....   .... .+..++|+|+|+++ ++++.++.|.+|+.. 
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~-------------~~~~~~---~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~   65 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAV-------------DKVITI---ADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVT   65 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEE-------------EEEEEC---TTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred             cEEEEcCCCCeEEEEECCCCcE-------------EEEEEc---CCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCC
Confidence            4789999999999999876432             111111   1111 36789999999766 455667899999975 


Q ss_pred             CceeEeecc-C----CCCEEEEEeCCCCCEEEEee------------CCCcEEEEECCCCceeEEeeecccCeEEEecCC
Q 008496          305 GDLKCTLSK-H----KGPIFSLKWNKKGDYLLTGS------------CDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN  367 (563)
Q Consensus       305 ~~~~~~~~~-h----~~~V~~l~~~~~~~~l~s~s------------~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~  367 (563)
                      +.....+.. +    ...+.+++|+|+|++|++++            .++.|.+||+.+++....+.. ...+..+.|.+
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~  144 (337)
T 1pby_B           66 GETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWAR  144 (337)
T ss_dssp             CCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECT
T ss_pred             CCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECC
Confidence            444444432 2    22567899999999998886            579999999999887776654 33455666765


Q ss_pred             Cce-EEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeC-CC-----------------------cE
Q 008496          368 NVS-FATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD-DV-----------------------TA  422 (563)
Q Consensus       368 ~~~-~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~-dg-----------------------~i  422 (563)
                      +.. ++++  ++.|++|++...+.+..+..+... ..+.|+|+++.++..+. ++                       .|
T Consensus       145 dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  221 (337)
T 1pby_B          145 DGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWE-AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGL  221 (337)
T ss_dssp             TSSCEEEE--SSSEEEEETTTTEEEEEECSTTTT-TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEE
T ss_pred             CCCEEEEe--CCeEEEEECCCCcEeeeeeccccC-CCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccce
Confidence            543 4444  688999999988877666544311 12378999987655443 32                       46


Q ss_pred             EEEeCCCCcee-eeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcC
Q 008496          423 KIWNMKQDKYV-HDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSP  501 (563)
Q Consensus       423 ~iwd~~~~~~~-~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp  501 (563)
                      .+||+.+++.. ..+..+...+.+++|+|++.         +++++  ++.|++||+.+++.+..+..+ ..+.+++|+|
T Consensus       222 ~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~---------~l~~~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~  289 (337)
T 1pby_B          222 LTMDLETGEMAMREVRIMDVFYFSTAVNPAKT---------RAFGA--YNVLESFDLEKNASIKRVPLP-HSYYSVNVST  289 (337)
T ss_dssp             EEEETTTCCEEEEEEEECSSCEEEEEECTTSS---------EEEEE--ESEEEEEETTTTEEEEEEECS-SCCCEEEECT
T ss_pred             EEEeCCCCCceEeecCCCCCceeeEEECCCCC---------EEEEe--CCeEEEEECCCCcCcceecCC-CceeeEEECC
Confidence            89999988764 23345566788999999875         45555  799999999999988777643 4578999999


Q ss_pred             CCCEEEEEeCCCcEEEEecCCCeeEEEEecC
Q 008496          502 TGEYLASGSLDKSMHIWSLKEGKIVKTYTGN  532 (563)
Q Consensus       502 dg~~lasgs~dg~v~iw~~~~~~~~~~~~~~  532 (563)
                      ||++|++++.++.|.+||+.+++.+..+...
T Consensus       290 dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~~  320 (337)
T 1pby_B          290 DGSTVWLGGALGDLAAYDAETLEKKGQVDLP  320 (337)
T ss_dssp             TSCEEEEESBSSEEEEEETTTCCEEEEEECG
T ss_pred             CCCEEEEEcCCCcEEEEECcCCcEEEEEEcC
Confidence            9999999999999999999999998887643

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.89  E-value=1.3e-20  Score=187.13  Aligned_cols=270  Identities=10%  Similarity=0.055  Sum_probs=201.8

Q ss_pred             CCceEEEEECCCCCEEEEeeC-------CCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCC
Q 008496          215 TSEVCACAWSPAGSLLASGSG-------DSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT  287 (563)
Q Consensus       215 ~~~V~~~~~sp~~~~latgs~-------D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~  287 (563)
                      ...+..++|+|++++|++++.       ++.|.+||..++...             .....     ...+..++|+|+|+
T Consensus        40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~-------------~~~~~-----~~~~~~~~~s~dg~  101 (353)
T 3vgz_A           40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVT-------------QAIHN-----DLKPFGATINNTTQ  101 (353)
T ss_dssp             ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEE-------------EEEEE-----SSCCCSEEEETTTT
T ss_pred             ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEE-------------EEEec-----CCCcceEEECCCCC
Confidence            356789999999998887774       568999998765321             11111     12366789999999


Q ss_pred             EEEE-EeCCCeEEEEEcC-CceeEeeccCCCC---------EEEEEeCCCCCEEEEee--CCCcEEEEECCCCceeEEee
Q 008496          288 LLAT-GSYDGQARIWSTN-GDLKCTLSKHKGP---------IFSLKWNKKGDYLLTGS--CDKTAIVWDVKTEEWKQQFE  354 (563)
Q Consensus       288 ~l~s-g~~dg~i~vw~~~-~~~~~~~~~h~~~---------V~~l~~~~~~~~l~s~s--~D~~v~iwd~~~~~~~~~~~  354 (563)
                      +++. +..++.|.+||.. ++....+..+...         +.++.|+|+|+++++++  .++.|.+||+.+++....+.
T Consensus       102 ~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~  181 (353)
T 3vgz_A          102 TLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQ  181 (353)
T ss_dssp             EEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEEC
T ss_pred             EEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEec
Confidence            5554 5557999999975 4555555544322         68899999999887766  47899999999998887776


Q ss_pred             ecccCeEEEecCCC-ceEEEEeCCCeEEEEEcCCCcceeeecC----CCcceeEEEECCCCCEEEEEe-CCCcEEEEeCC
Q 008496          355 FHSGPTLDVDWRNN-VSFATSSTDNMIYVCKIGENRPIKTFAG----HQGEVNCVKWDPTGSLLASCS-DDVTAKIWNMK  428 (563)
Q Consensus       355 ~~~~~~~~~~~~~~-~~~~~~~~d~~i~~~~~~~~~~~~~~~~----h~~~i~~~~~~~~~~~las~s-~dg~i~iwd~~  428 (563)
                      .+...+..+.|..+ ..++++..++.|++|+..+.+.+..+..    +...+.+++|+|+++.++.++ .++.|.+||..
T Consensus       182 ~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~  261 (353)
T 3vgz_A          182 NTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTR  261 (353)
T ss_dssp             CCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETT
T ss_pred             CCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECC
Confidence            44444556666543 4566777799999999998887766653    555688899999999766555 45999999999


Q ss_pred             CCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEE
Q 008496          429 QDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLAS  508 (563)
Q Consensus       429 ~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~las  508 (563)
                      +++.+..+.....  ..++|+|++.        .++++...++.|.+||+.+++.+..+... ..+.+++|+|||++|++
T Consensus       262 ~~~~~~~~~~~~~--~~~~~s~dg~--------~l~v~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~v  330 (353)
T 3vgz_A          262 NGNILAKVAAPES--LAVLFNPARN--------EAYVTHRQAGKVSVIDAKSYKVVKTFDTP-THPNSLALSADGKTLYV  330 (353)
T ss_dssp             TCCEEEEEECSSC--CCEEEETTTT--------EEEEEETTTTEEEEEETTTTEEEEEEECC-SEEEEEEECTTSCEEEE
T ss_pred             CCcEEEEEEcCCC--ceEEECCCCC--------EEEEEECCCCeEEEEECCCCeEEEEEecC-CCCCeEEEcCCCCEEEE
Confidence            9988776664432  5688999875        35666668999999999999988887654 46799999999998776


Q ss_pred             EeCCC
Q 008496          509 GSLDK  513 (563)
Q Consensus       509 gs~dg  513 (563)
                      +..++
T Consensus       331 ~~~~~  335 (353)
T 3vgz_A          331 SVKQK  335 (353)
T ss_dssp             EEECC
T ss_pred             EEccc
Confidence            66553

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.89  E-value=1e-21  Score=200.76  Aligned_cols=245  Identities=19%  Similarity=0.197  Sum_probs=176.5

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCeEEEEEcCC------------ceeE----eeccCCCCEEEEEeCCCCCEEE----Eee
Q 008496          275 KDVTTLDWNGEGTLLATGSYDGQARIWSTNG------------DLKC----TLSKHKGPIFSLKWNKKGDYLL----TGS  334 (563)
Q Consensus       275 ~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~------------~~~~----~~~~h~~~V~~l~~~~~~~~l~----s~s  334 (563)
                      ..+..+++++++.++++|+.+| +++|+...            ....    ....|..+|.+++|+|+|++|+    +|+
T Consensus        37 ~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs  115 (434)
T 2oit_A           37 ERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSE  115 (434)
T ss_dssp             SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEETT
T ss_pred             CCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEeccC
Confidence            3478899999999999999988 88887421            1110    1123567899999999999999    889


Q ss_pred             CCCcEEEEECCCCceeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCC-CCEE
Q 008496          335 CDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT-GSLL  413 (563)
Q Consensus       335 ~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~-~~~l  413 (563)
                      .|++|++||+.+.....     ....                         ..-..+..+.+|...|.+++|+|+ +.+|
T Consensus       116 ~d~~v~iwd~~~~~~~~-----~~~~-------------------------~~~~~~~~~~~h~~~V~~v~~~p~~~~~l  165 (434)
T 2oit_A          116 YGSIIAFFDVRTFSNEA-----KQQK-------------------------RPFAYHKLLKDAGGMVIDMKWNPTVPSMV  165 (434)
T ss_dssp             TEEEEEEEEHHHHHCTT-----CSSC-------------------------CCSEEEECCCSGGGSEEEEEECSSCTTEE
T ss_pred             CCceEEEEEccccccCC-----cCCc-------------------------ceeeeeeccCCCCCceEEEEECCCCCCEE
Confidence            99999999986531000     0000                         000113456789999999999998 8899


Q ss_pred             EEEeCCCcEEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCC---
Q 008496          414 ASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGH---  490 (563)
Q Consensus       414 as~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h---  490 (563)
                      ++|+.||+|++||++++..+.....|...|++++|+|+|.         +|++|+.||+|++||++ ++....+..|   
T Consensus       166 as~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~---------~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~  235 (434)
T 2oit_A          166 AVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGK---------QLAVGKQNGTVVQYLPT-LQEKKVIPCPPFY  235 (434)
T ss_dssp             EEEETTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSS---------CEEEEETTSCEEEECTT-CCEEEEECCCTTC
T ss_pred             EEEECCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCC---------EEEEEcCCCcEEEEccC-CcccccccCCccc
Confidence            9999999999999998877766777889999999999875         68999999999999998 6665555443   


Q ss_pred             ----CCCEEEEEEcCCCCEEEE-EeCCCc------EEEEecCCCe-----eEEEEec--------CCCEEEEEEcCCCCE
Q 008496          491 ----REPVYSLAFSPTGEYLAS-GSLDKS------MHIWSLKEGK-----IVKTYTG--------NGGIFEVCWNKEGDK  546 (563)
Q Consensus       491 ----~~~i~~l~~spdg~~las-gs~dg~------v~iw~~~~~~-----~~~~~~~--------~~~i~~l~w~~~g~~  546 (563)
                          ...|.+++|++++.++++ ++.||.      +++|++.+.+     ....+..        ...-+.+.+-++.+.
T Consensus       236 ~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l  315 (434)
T 2oit_A          236 ESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDL  315 (434)
T ss_dssp             CTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTE
T ss_pred             CCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCE
Confidence                237999999999988865 344543      8999997642     1122211        112234555577777


Q ss_pred             EEEEEC-CCeEEEEE
Q 008496          547 IAACFA-NHTVCVLD  560 (563)
Q Consensus       547 la~~~~-~~~v~v~~  560 (563)
                      +.+++. ...|.|+.
T Consensus       316 ~~v~s~~s~dv~vl~  330 (434)
T 2oit_A          316 VLAASAASTEVSILA  330 (434)
T ss_dssp             EEEEETTCSBCEEEE
T ss_pred             EEEecCCCCceeEEE
Confidence            776655 44566664

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.89  E-value=5.2e-22  Score=217.23  Aligned_cols=314  Identities=12%  Similarity=0.063  Sum_probs=213.6

Q ss_pred             EEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEEeC-----
Q 008496          220 ACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSY-----  294 (563)
Q Consensus       220 ~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~-----  294 (563)
                      .++|+|+|++++++ .|+.|++|++.++...           .+  ...+. .....|.+++|||||++|++++.     
T Consensus        20 ~~~~s~dg~~~~~~-~d~~i~~~~~~~g~~~-----------~~--~~~~~-~~~~~~~~~~~SpDg~~la~~~~~~~~~   84 (719)
T 1z68_A           20 FPNWISGQEYLHQS-ADNNIVLYNIETGQSY-----------TI--LSNRT-MKSVNASNYGLSPDRQFVYLESDYSKLW   84 (719)
T ss_dssp             CCEESSSSEEEEEC-TTSCEEEEESSSCCEE-----------EE--ECHHH-HHTTTCSEEEECTTSSEEEEEEEEEECS
T ss_pred             ccEECCCCeEEEEc-CCCCEEEEEcCCCcEE-----------EE--Ecccc-ccccceeeEEECCCCCeEEEEecCceeE
Confidence            57899999766654 6999999998765421           11  11110 00124789999999999999876     


Q ss_pred             ----CCeEEEEEcCCcee---EeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEee-ecccCe------
Q 008496          295 ----DGQARIWSTNGDLK---CTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFE-FHSGPT------  360 (563)
Q Consensus       295 ----dg~i~vw~~~~~~~---~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~-~~~~~~------  360 (563)
                          ++.|++|+..+...   ..+   ...+..++|+|+|++|++++ |+.|++||+.+++..+... .+...+      
T Consensus        85 ~~s~~~~i~~~d~~~g~~~~~~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~  160 (719)
T 1z68_A           85 RYSYTATYYIYDLSNGEFVRGNEL---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPD  160 (719)
T ss_dssp             SSCEEEEEEEEETTTTEECCSSCC---CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCC
T ss_pred             EeecceEEEEEECCCCccccceec---CcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEccccc
Confidence                78999999876544   233   35688899999999999885 7899999998887654321 111111      


Q ss_pred             -----------EEEecCCCc-eEEEEeCCC----------------------------------eEEEEEcCCCcce---
Q 008496          361 -----------LDVDWRNNV-SFATSSTDN----------------------------------MIYVCKIGENRPI---  391 (563)
Q Consensus       361 -----------~~~~~~~~~-~~~~~~~d~----------------------------------~i~~~~~~~~~~~---  391 (563)
                                 ..+.|.++. .++.++.|.                                  .|++|++......   
T Consensus       161 ~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~  240 (719)
T 1z68_A          161 WVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQ  240 (719)
T ss_dssp             HHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCE
T ss_pred             ceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCcccee
Confidence                       367887664 555555331                                  7889998876542   


Q ss_pred             -----eeecCCCcceeEEEECCCCCEEEEEeCC----CcEEEEe----CCCCceeeee----cccCCCEE-----EEEEc
Q 008496          392 -----KTFAGHQGEVNCVKWDPTGSLLASCSDD----VTAKIWN----MKQDKYVHDL----REHSKEIY-----TIRWS  449 (563)
Q Consensus       392 -----~~~~~h~~~i~~~~~~~~~~~las~s~d----g~i~iwd----~~~~~~~~~~----~~~~~~i~-----~~~~~  449 (563)
                           ..+.+|...+.+++|+||++++++....    ..|.+||    ..+++....+    ..|...+.     .+.|+
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~s  320 (719)
T 1z68_A          241 EVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFS  320 (719)
T ss_dssp             ECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEEC
T ss_pred             EccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEEC
Confidence                 2245788889999999998888775433    2488899    7777665444    35666665     78999


Q ss_pred             cCCCCCCCCCCcEEEEEEeCCC--eEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCC-----CcEEEEecCC
Q 008496          450 PTGSGTNNPNQQLILASASFDS--TVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLD-----KSMHIWSLKE  522 (563)
Q Consensus       450 p~~~~~~~~~~~~~l~s~s~dg--~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~d-----g~v~iw~~~~  522 (563)
                      |+|..       ++++++..+|  .|.+||+..++ ...+..+...|..+.++ +++.|+..+.+     +.+++|.+..
T Consensus       321 pdg~~-------l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~  391 (719)
T 1z68_A          321 YDAIS-------YYKIFSDKDGYKHIHYIKDTVEN-AIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISI  391 (719)
T ss_dssp             TTSSC-------EEEEEECTTSCEEEEEESSCSTT-CEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEEC
T ss_pred             CCCCe-------EEEEEEccCCceEEEEEECCCCc-eEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeC
Confidence            98852       3344555666  57777877666 45666666678888888 88877766654     7888998753


Q ss_pred             --Cee-EEEEe-----cCCCEEEEEEcCCCCEEEEEECC---CeEEEEEe
Q 008496          523 --GKI-VKTYT-----GNGGIFEVCWNKEGDKIAACFAN---HTVCVLDF  561 (563)
Q Consensus       523 --~~~-~~~~~-----~~~~i~~l~w~~~g~~la~~~~~---~~v~v~~~  561 (563)
                        +.. ...+.     ....+..++|+|+|+.|+..+.+   ..+.+||+
T Consensus       392 ~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~  441 (719)
T 1z68_A          392 GSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDG  441 (719)
T ss_dssp             SSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECS
T ss_pred             CCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEEC
Confidence              421 23332     22457889999999988865432   24556654

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.89  E-value=4.3e-20  Score=183.34  Aligned_cols=249  Identities=11%  Similarity=0.144  Sum_probs=171.3

Q ss_pred             CCeEEEEECCCCCEEEEEeC---CCeEEEEEcCCce---eEeeccCCCCEEEEEeCCCCCEEEEee-CCCcEEEEECCC-
Q 008496          275 KDVTTLDWNGEGTLLATGSY---DGQARIWSTNGDL---KCTLSKHKGPIFSLKWNKKGDYLLTGS-CDKTAIVWDVKT-  346 (563)
Q Consensus       275 ~~V~~l~~s~~g~~l~sg~~---dg~i~vw~~~~~~---~~~~~~h~~~V~~l~~~~~~~~l~s~s-~D~~v~iwd~~~-  346 (563)
                      ..+..++|+|+|+ |++++.   ++.|++|+..+..   ...+..+...+..++|+|+|++|++++ .++++.+||+.. 
T Consensus        40 ~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~  118 (347)
T 3hfq_A           40 QNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAAD  118 (347)
T ss_dssp             SCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTT
T ss_pred             CCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCC
Confidence            4467799999999 555443   6899999985432   233445677788999999999988887 679999999853 


Q ss_pred             CceeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEe
Q 008496          347 EEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWN  426 (563)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd  426 (563)
                      +.... +..                           .......|.  ...+...+.+++|+|+|++++++..++.|++|+
T Consensus       119 g~~~~-~~~---------------------------~~~~~~~p~--~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~  168 (347)
T 3hfq_A          119 GALTL-TDT---------------------------VQHSGHGPR--PEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYN  168 (347)
T ss_dssp             SCEEE-EEE---------------------------EECCCCCSS--TTCSSCCEEEEEECTTSCEEEEETTTTEEEEEE
T ss_pred             CCeee-cce---------------------------eecCCCCCC--ccccCCCceEEEECCCCcEEEEeCCCCEEEEEE
Confidence            22111 100                           000000010  112344588999999999777777799999999


Q ss_pred             CC-CCcee--eeeccc-CCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC--CeE--EEEecCCC------C
Q 008496          427 MK-QDKYV--HDLREH-SKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL--GKL--LYSLNGHR------E  492 (563)
Q Consensus       427 ~~-~~~~~--~~~~~~-~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~--~~~--~~~~~~h~------~  492 (563)
                      +. ++...  ..+..+ ......++|+|+|.        .+++++..++.|++|++..  ++.  +..+....      .
T Consensus       169 ~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~--------~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~  240 (347)
T 3hfq_A          169 VSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQ--------YAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHN  240 (347)
T ss_dssp             ECTTSCEEEEEEEECCTTCCEEEEEECTTSS--------EEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCC
T ss_pred             ECCCCcEEEeeeEEcCCCCCCceEEECCCCC--------EEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCC
Confidence            98 44332  122222 23577899999875        3556677889999999874  553  22333222      3


Q ss_pred             CEEEEEEcCCCCEE-EEEeCCCcEEEEecCC-C--eeEEEEec-CCCEEEEEEcCCCCEEEEEEC-CCeEEEEEee
Q 008496          493 PVYSLAFSPTGEYL-ASGSLDKSMHIWSLKE-G--KIVKTYTG-NGGIFEVCWNKEGDKIAACFA-NHTVCVLDFR  562 (563)
Q Consensus       493 ~i~~l~~spdg~~l-asgs~dg~v~iw~~~~-~--~~~~~~~~-~~~i~~l~w~~~g~~la~~~~-~~~v~v~~~~  562 (563)
                      .+..++|+|||++| ++...++.|.+|++.. +  +.+..+.. ...+..++|+|||++|+++.. ++.+.||++.
T Consensus       241 ~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d  316 (347)
T 3hfq_A          241 GAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARD  316 (347)
T ss_dssp             EEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             cceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEe
Confidence            48899999999987 5566789999999972 2  45555554 335789999999999888865 4889999653

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.88  E-value=7.8e-21  Score=202.59  Aligned_cols=268  Identities=12%  Similarity=0.134  Sum_probs=193.7

Q ss_pred             CCceEEEEECCCCCEEEEeeC-CCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEEe
Q 008496          215 TSEVCACAWSPAGSLLASGSG-DSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGS  293 (563)
Q Consensus       215 ~~~V~~~~~sp~~~~latgs~-D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~  293 (563)
                      ..+|++++|+|||+.||+++. ||+++||++.++..              ..+   ...+...|..++|+|| +++++++
T Consensus        21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~--------------~~l---t~~~~~~~~~~~~spd-~~l~~~~   82 (582)
T 3o4h_A           21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGET--------------VKL---NREPINSVLDPHYGVG-RVILVRD   82 (582)
T ss_dssp             HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEE--------------EEC---CSSCCSEECEECTTCS-EEEEEEE
T ss_pred             ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCc--------------Eee---ecccccccccccCCCC-eEEEEec
Confidence            356999999999999999887 99999999754321              111   1112246889999999 7888777


Q ss_pred             C---CCeEEEE--Ec--CCceeEeeccCCCCEEEEEeCCCCCE-EEEeeCCCcEEEEECCCCceeEEeeecccCeEEEec
Q 008496          294 Y---DGQARIW--ST--NGDLKCTLSKHKGPIFSLKWNKKGDY-LLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDW  365 (563)
Q Consensus       294 ~---dg~i~vw--~~--~~~~~~~~~~h~~~V~~l~~~~~~~~-l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~  365 (563)
                      .   +...++|  +.  .+... .+..+. .+...+|+|+|+. +++.+.++.+.+||+.+++.........   .++.|
T Consensus        83 ~~~g~~~~~l~~~~~~~~g~~~-~l~~~~-~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~---~~~~~  157 (582)
T 3o4h_A           83 VSKGAEQHALFKVNTSRPGEEQ-RLEAVK-PMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG---FGFVS  157 (582)
T ss_dssp             CSTTSCCEEEEEEETTSTTCCE-ECTTSC-SBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS---CEEEE
T ss_pred             cCCCCcceEEEEEeccCCCccc-cccCCC-CceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC---ceEEE
Confidence            5   4555565  45  55444 333222 2345688888853 3333444455599999887665444332   55666


Q ss_pred             CCC-ceEEEEeCC----CeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCC--cEEEEeCCCCceeeeecc
Q 008496          366 RNN-VSFATSSTD----NMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDV--TAKIWNMKQDKYVHDLRE  438 (563)
Q Consensus       366 ~~~-~~~~~~~~d----~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg--~i~iwd~~~~~~~~~~~~  438 (563)
                      .++ ..++.++.+    ..|++|++.++.. ..+.+|.+.+..++|+|||+.|+++..++  .|++||+.+++.. .+..
T Consensus       158 spDG~~la~~~~~~~~~~~i~~~d~~~g~~-~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~  235 (582)
T 3o4h_A          158 DIRGDLIAGLGFFGGGRVSLFTSNLSSGGL-RVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLEL  235 (582)
T ss_dssp             EEETTEEEEEEEEETTEEEEEEEETTTCCC-EEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCC
T ss_pred             CCCCCEEEEEEEcCCCCeEEEEEcCCCCCc-eEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccC
Confidence            544 445555555    6799999877664 46778888999999999999999888898  8999999988877 6677


Q ss_pred             cCCCEEEEE--------EccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEe
Q 008496          439 HSKEIYTIR--------WSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGS  510 (563)
Q Consensus       439 ~~~~i~~~~--------~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs  510 (563)
                      |...+..+.        |+|+|.         ++++++.|++++||++  |+.+.   .+...|.+++|+ ||+++++++
T Consensus       236 ~~~~~~~~~~~~~~~~~~spdg~---------~~~~~~~~g~~~l~~~--g~~~~---~~~~~v~~~~~s-dg~~l~~~s  300 (582)
T 3o4h_A          236 PSKDFSSYRPTAITWLGYLPDGR---------LAVVARREGRSAVFID--GERVE---APQGNHGRVVLW-RGKLVTSHT  300 (582)
T ss_dssp             SCSHHHHHCCSEEEEEEECTTSC---------EEEEEEETTEEEEEET--TEEEC---CCSSEEEEEEEE-TTEEEEEEE
T ss_pred             CCcChhhhhhccccceeEcCCCc---------EEEEEEcCCcEEEEEE--CCeec---cCCCceEEEEec-CCEEEEEEc
Confidence            776666666        999884         7889999999999999  77654   234678999999 999999888


Q ss_pred             CCC---cEEEEecCC
Q 008496          511 LDK---SMHIWSLKE  522 (563)
Q Consensus       511 ~dg---~v~iw~~~~  522 (563)
                      .+.   .|.+|+..+
T Consensus       301 ~~~~p~~l~~~d~~~  315 (582)
T 3o4h_A          301 SLSTPPRIVSLPSGE  315 (582)
T ss_dssp             ETTEEEEEEEETTCC
T ss_pred             CCCCCCeEEEEcCCC
Confidence            774   477777653

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.87  E-value=1.7e-19  Score=180.03  Aligned_cols=268  Identities=12%  Similarity=0.132  Sum_probs=180.6

Q ss_pred             CCEEEEEeC----CCeEEEEEcC---CceeEeeccCCCCEEEEEeCCCCCEEEEeeCC----CcEEEEECCC--CceeE-
Q 008496          286 GTLLATGSY----DGQARIWSTN---GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCD----KTAIVWDVKT--EEWKQ-  351 (563)
Q Consensus       286 g~~l~sg~~----dg~i~vw~~~---~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D----~~v~iwd~~~--~~~~~-  351 (563)
                      ..+++.|++    ++.|.+|..+   +.+......+...+..++|+|+|++|++++.+    +.|.+|++..  +.+.. 
T Consensus        13 ~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~   92 (361)
T 3scy_A           13 ELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLL   92 (361)
T ss_dssp             EEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEE
T ss_pred             ceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEe
Confidence            345666654    4689998753   33332222266777889999999999998886    7999998765  44332 


Q ss_pred             -EeeecccCeEEEecCCCc-eEEEEeCCCeEEEEEcCCCcceeee------cC--------CCcceeEEEECCCCCEEEE
Q 008496          352 -QFEFHSGPTLDVDWRNNV-SFATSSTDNMIYVCKIGENRPIKTF------AG--------HQGEVNCVKWDPTGSLLAS  415 (563)
Q Consensus       352 -~~~~~~~~~~~~~~~~~~-~~~~~~~d~~i~~~~~~~~~~~~~~------~~--------h~~~i~~~~~~~~~~~las  415 (563)
                       ....+......+.+ +.. .+++...++.+.+|++.....+..+      .+        +...+.+++|+|+|++|++
T Consensus        93 ~~~~~~~~~p~~~~~-dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~  171 (361)
T 3scy_A           93 NTQKTMGADPCYLTT-NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLA  171 (361)
T ss_dssp             EEEECSSSCEEEEEE-CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEE
T ss_pred             eEeccCCCCcEEEEE-CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEE
Confidence             22223344556666 444 4455557899999999754332211      11        1233578999999996655


Q ss_pred             E-eCCCcEEEEeCCCCce------e-------eeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC
Q 008496          416 C-SDDVTAKIWNMKQDKY------V-------HDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG  481 (563)
Q Consensus       416 ~-s~dg~i~iwd~~~~~~------~-------~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~  481 (563)
                      + ..++.|++|++.....      +       .....+......++|+|++.        .+++++..++.|++|++.++
T Consensus       172 ~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~--------~l~v~~~~~~~v~v~~~~~g  243 (361)
T 3scy_A          172 DDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGK--------FAYLINEIGGTVIAFRYADG  243 (361)
T ss_dssp             EETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSS--------EEEEEETTTCEEEEEEEETT
T ss_pred             EeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCC--------EEEEEcCCCCeEEEEEecCC
Confidence            4 4588999998875431      1       11223345678899999885        24444447999999999877


Q ss_pred             eE--EEEec---CCCCCEEEEEEcCCCCEEEEEeC--CCcEEEEecC--CCe--eEEEEecCCCEEEEEEcCCCCEEEEE
Q 008496          482 KL--LYSLN---GHREPVYSLAFSPTGEYLASGSL--DKSMHIWSLK--EGK--IVKTYTGNGGIFEVCWNKEGDKIAAC  550 (563)
Q Consensus       482 ~~--~~~~~---~h~~~i~~l~~spdg~~lasgs~--dg~v~iw~~~--~~~--~~~~~~~~~~i~~l~w~~~g~~la~~  550 (563)
                      +.  +..+.   .+......++|||||++|+++..  ++.|.+|++.  +++  .+..+.....+.+++|+|||++|+++
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~g~~~~~~~~spdg~~l~~~  323 (361)
T 3scy_A          244 MLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLTGIHPRNFIITPNGKYLLVA  323 (361)
T ss_dssp             EEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEECSSCCCEEEECTTSCEEEEE
T ss_pred             ceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecCCCCCceEEECCCCCEEEEE
Confidence            54  33332   23345789999999999876665  4899999995  455  44455444457899999999998888


Q ss_pred             E-CCCeEEEEEee
Q 008496          551 F-ANHTVCVLDFR  562 (563)
Q Consensus       551 ~-~~~~v~v~~~~  562 (563)
                      . .++.+.||.+.
T Consensus       324 ~~~~~~v~v~~~d  336 (361)
T 3scy_A          324 CRDTNVIQIFERD  336 (361)
T ss_dssp             ETTTTEEEEEEEC
T ss_pred             ECCCCCEEEEEEE
Confidence            7 57889997654

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.87  E-value=1e-19  Score=180.63  Aligned_cols=253  Identities=13%  Similarity=0.161  Sum_probs=171.4

Q ss_pred             CCCCceEEEEECCCCCEEEEeeC--CCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEE
Q 008496          213 GHTSEVCACAWSPAGSLLASGSG--DSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLA  290 (563)
Q Consensus       213 ~h~~~V~~~~~sp~~~~latgs~--D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~  290 (563)
                      .+...+..++|+|+|++++++..  ++.|++|++.++..           ..+....    .+...+..++|+|+|++|+
T Consensus        37 ~~~~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~-----------~~~~~~~----~~~~~p~~~a~spdg~~l~  101 (347)
T 3hfq_A           37 AATQNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTA-----------HKLNTVV----APGTPPAYVAVDEARQLVY  101 (347)
T ss_dssp             EECSCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTEE-----------EEEEEEE----EESCCCSEEEEETTTTEEE
T ss_pred             eccCCcceEEEccCCeEEEEEecCCCceEEEEEecCCcE-----------EEeeeee----cCCCCCEEEEECCCCCEEE
Confidence            34466778999999994444432  68999999864321           0111111    1234578899999999988


Q ss_pred             EEe-CCCeEEEEEcC--Ccee--Eeecc---------CCCCEEEEEeCCCCCEEEEeeCCCcEEEEECC-CCceeEEeee
Q 008496          291 TGS-YDGQARIWSTN--GDLK--CTLSK---------HKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVK-TEEWKQQFEF  355 (563)
Q Consensus       291 sg~-~dg~i~vw~~~--~~~~--~~~~~---------h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~-~~~~~~~~~~  355 (563)
                      +++ .++.+++|+..  +...  ..+..         +...+.+++|+|+|+.+++...++.|.+||+. ++.+....  
T Consensus       102 ~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~--  179 (347)
T 3hfq_A          102 SANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQS--  179 (347)
T ss_dssp             EEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEE--
T ss_pred             EEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEee--
Confidence            888 67999999975  2222  12211         12348899999999966666678899999987 44322110  


Q ss_pred             cccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecC-CCcceeEEEECCCCCEEEE-EeCCCcEEEEeCCC--Cc
Q 008496          356 HSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAG-HQGEVNCVKWDPTGSLLAS-CSDDVTAKIWNMKQ--DK  431 (563)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~-h~~~i~~~~~~~~~~~las-~s~dg~i~iwd~~~--~~  431 (563)
                                                           .+.. ....+..++|+|+|+++++ +..++.|++|++..  +.
T Consensus       180 -------------------------------------~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~  222 (347)
T 3hfq_A          180 -------------------------------------VLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGA  222 (347)
T ss_dssp             -------------------------------------EEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTE
T ss_pred             -------------------------------------eEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCc
Confidence                                                 0000 1124567999999996554 56789999999874  43


Q ss_pred             e--eeeecccC------CCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCC---CCeEEEEecCCCCCEEEEEEc
Q 008496          432 Y--VHDLREHS------KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVE---LGKLLYSLNGHREPVYSLAFS  500 (563)
Q Consensus       432 ~--~~~~~~~~------~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~---~~~~~~~~~~h~~~i~~l~~s  500 (563)
                      .  +..+....      ..+..++|+|+|.        .+++++..++.|.+|++.   ..+.+..+..+...+..++|+
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~i~~spdG~--------~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~s  294 (347)
T 3hfq_A          223 FTQLGIVKTIPADYTAHNGAAAIRLSHDGH--------FLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLD  294 (347)
T ss_dssp             EEEEEEEESSCTTCCSCCEEEEEEECTTSC--------EEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEEC
T ss_pred             eEEeeeeeecCCCCCCCCcceeEEECCCCC--------EEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEEC
Confidence            2  22222222      3478899999885        355677789999999987   225566666666678899999


Q ss_pred             CCCCEEEEEeCC-CcEEEE--ecCCCeeEE
Q 008496          501 PTGEYLASGSLD-KSMHIW--SLKEGKIVK  527 (563)
Q Consensus       501 pdg~~lasgs~d-g~v~iw--~~~~~~~~~  527 (563)
                      |||++|++++.+ +.|.+|  |..+|++..
T Consensus       295 pdg~~l~v~~~~~~~v~v~~~d~~tg~l~~  324 (347)
T 3hfq_A          295 PTEAFVVVVNQNTDNATLYARDLTSGKLSL  324 (347)
T ss_dssp             TTSSEEEEEETTTTEEEEEEECTTTCCEEE
T ss_pred             CCCCEEEEEEcCCCcEEEEEEeCCCCeEEe
Confidence            999999888764 899999  556777653

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.87  E-value=9.5e-20  Score=180.54  Aligned_cols=269  Identities=12%  Similarity=0.053  Sum_probs=184.3

Q ss_pred             EEEECCCCCEEEEEeCCCeEEEEEcCC-ceeEeeccCC-CCEEEEEeCCCCCEEE-EeeCCCcEEEEECCCCceeEEeee
Q 008496          279 TLDWNGEGTLLATGSYDGQARIWSTNG-DLKCTLSKHK-GPIFSLKWNKKGDYLL-TGSCDKTAIVWDVKTEEWKQQFEF  355 (563)
Q Consensus       279 ~l~~s~~g~~l~sg~~dg~i~vw~~~~-~~~~~~~~h~-~~V~~l~~~~~~~~l~-s~s~D~~v~iwd~~~~~~~~~~~~  355 (563)
                      .+++++++.++++++.++.|++||... .....+..+. ..+..++|+|+|++++ ++..++.|.+||+.+++....+..
T Consensus         4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~   83 (349)
T 1jmx_B            4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANL   83 (349)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred             cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEc
Confidence            346788899999999999999999764 4555554433 2567899999998765 556789999999999887776654


Q ss_pred             ccc------CeEEEecCCCc-eEEEEeC------------CCeEEEEEcCCCc---ceeeecCCCcceeEEEECCCCCEE
Q 008496          356 HSG------PTLDVDWRNNV-SFATSST------------DNMIYVCKIGENR---PIKTFAGHQGEVNCVKWDPTGSLL  413 (563)
Q Consensus       356 ~~~------~~~~~~~~~~~-~~~~~~~------------d~~i~~~~~~~~~---~~~~~~~h~~~i~~~~~~~~~~~l  413 (563)
                      ...      .+..+.|.++. .+++++.            ++.|++|++.+.+   .+..+.. ...+.+++|+|+|+ +
T Consensus        84 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~s~dg~-l  161 (349)
T 1jmx_B           84 SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPM-PRQVYLMRAADDGS-L  161 (349)
T ss_dssp             CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEEC-CSSCCCEEECTTSC-E
T ss_pred             ccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccC-CCcccceeECCCCc-E
Confidence            321      24556666543 4555553            4899999997743   3334433 33688999999999 5


Q ss_pred             EEEeCCCcEEEEeCCCCceeeeecccCC------------------------CEEEEEEccCCCCCCCC--CCcEEEEEE
Q 008496          414 ASCSDDVTAKIWNMKQDKYVHDLREHSK------------------------EIYTIRWSPTGSGTNNP--NQQLILASA  467 (563)
Q Consensus       414 as~s~dg~i~iwd~~~~~~~~~~~~~~~------------------------~i~~~~~~p~~~~~~~~--~~~~~l~s~  467 (563)
                      ++++.  .|.+||..+++.+..+..+..                        ....+.+++++......  ....++...
T Consensus       162 ~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  239 (349)
T 1jmx_B          162 YVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVD  239 (349)
T ss_dssp             EEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEE
T ss_pred             EEccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEe
Confidence            45544  499999998887766543320                        22334554433210000  000111122


Q ss_pred             eCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEecCCCeeEEEEecCCCEEEEEEcCCCCE
Q 008496          468 SFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSP-TGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDK  546 (563)
Q Consensus       468 s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp-dg~~lasgs~dg~v~iw~~~~~~~~~~~~~~~~i~~l~w~~~g~~  546 (563)
                      ..++.+++|++         ..+...+.+++|+| ||++|+++  ++.|.+||+.+++.++.+.....+..++|+|+|++
T Consensus       240 ~~~~~~~~~~~---------~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~  308 (349)
T 1jmx_B          240 LKTGKTHTQEF---------ADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDK  308 (349)
T ss_dssp             TTTCCEEEEEE---------EECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECSSSSC
T ss_pred             ccCCcEEeccc---------ccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCCCCccceEECCCCCE
Confidence            22333443332         33556789999999 99999988  88999999999999888877667889999999999


Q ss_pred             EEEEECCCeEEEEEee
Q 008496          547 IAACFANHTVCVLDFR  562 (563)
Q Consensus       547 la~~~~~~~v~v~~~~  562 (563)
                      |+++..++.|.|||.+
T Consensus       309 l~~~~~~~~v~v~d~~  324 (349)
T 1jmx_B          309 LYLGGTFNDLAVFNPD  324 (349)
T ss_dssp             EEEESBSSEEEEEETT
T ss_pred             EEEecCCCeEEEEecc
Confidence            9988888999999974

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.86  E-value=1.1e-19  Score=179.95  Aligned_cols=275  Identities=11%  Similarity=0.062  Sum_probs=187.4

Q ss_pred             EEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEE-EEeCCCeE
Q 008496          220 ACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLA-TGSYDGQA  298 (563)
Q Consensus       220 ~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~-sg~~dg~i  298 (563)
                      .+++++++.++++++.++.|++||+.+++.             ......   .....+..++|+|+|++++ ++..++.|
T Consensus         4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~-------------~~~~~~---~~~~~~~~~~~s~dg~~~~v~~~~~~~i   67 (349)
T 1jmx_B            4 GPALKAGHEYMIVTNYPNNLHVVDVASDTV-------------YKSCVM---PDKFGPGTAMMAPDNRTAYVLNNHYGDI   67 (349)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETTTTEE-------------EEEEEC---SSCCSSCEEEECTTSSEEEEEETTTTEE
T ss_pred             cccccCCCEEEEEeCCCCeEEEEECCCCcE-------------EEEEec---CCCCCCceeEECCCCCEEEEEeCCCCcE
Confidence            456888899999999999999999876532             111111   1112467899999998654 55578999


Q ss_pred             EEEEcCC-ceeEeeccCC------CCEEEEEeCCCCCEEEEeeCC------------CcEEEEECCCCcee---EEeeec
Q 008496          299 RIWSTNG-DLKCTLSKHK------GPIFSLKWNKKGDYLLTGSCD------------KTAIVWDVKTEEWK---QQFEFH  356 (563)
Q Consensus       299 ~vw~~~~-~~~~~~~~h~------~~V~~l~~~~~~~~l~s~s~D------------~~v~iwd~~~~~~~---~~~~~~  356 (563)
                      .+|+... .....+..+.      ..+.+++|+|+|++|++++.+            +.|.+||+.+++..   ..+.. 
T Consensus        68 ~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-  146 (349)
T 1jmx_B           68 YGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPM-  146 (349)
T ss_dssp             EEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEEC-
T ss_pred             EEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccC-
Confidence            9999864 4444443222      236789999999999998865            89999999885433   22322 


Q ss_pred             ccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCC-c-----------------------ceeEEEECCCCCE
Q 008496          357 SGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQ-G-----------------------EVNCVKWDPTGSL  412 (563)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~-~-----------------------~i~~~~~~~~~~~  412 (563)
                      ...+..+.|..+..+++++  +.|++|+..+.+.+..+..+. +                       ...++++++++..
T Consensus       147 ~~~~~~~~~s~dg~l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  224 (349)
T 1jmx_B          147 PRQVYLMRAADDGSLYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQ  224 (349)
T ss_dssp             CSSCCCEEECTTSCEEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-----
T ss_pred             CCcccceeECCCCcEEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcC
Confidence            2235566676554454443  349999998877766654332 0                       2345666655421


Q ss_pred             -----------EEEEeCCCcEEEEeCCCCceeeeecccCCCEEEEEEcc-CCCCCCCCCCcEEEEEEeCCCeEEEEeCCC
Q 008496          413 -----------LASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSP-TGSGTNNPNQQLILASASFDSTVKLWDVEL  480 (563)
Q Consensus       413 -----------las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p-~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~  480 (563)
                                 +.....++.+++|++         ..+...+..++|+| ++.         +++++  ++.|.+||+.+
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~sp~dg~---------~l~~~--~~~v~~~d~~~  284 (349)
T 1jmx_B          225 DPATADLLYGYLSVDLKTGKTHTQEF---------ADLTELYFTGLRSPKDPN---------QIYGV--LNRLAKYDLKQ  284 (349)
T ss_dssp             --CCCEEEEEEEEEETTTCCEEEEEE---------EECSSCEEEEEECSSCTT---------EEEEE--ESEEEEEETTT
T ss_pred             CccccccceeEEEEeccCCcEEeccc---------ccCCCcceeeEecCCCCC---------EEEEE--cCeEEEEECcc
Confidence                       112223344444443         23556788999999 875         45555  88999999999


Q ss_pred             CeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEecCCC
Q 008496          481 GKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGG  534 (563)
Q Consensus       481 ~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~~~~  534 (563)
                      ++.+..+... ..+.+++|+|||++|++++.++.|.+||+.+++.+..+...++
T Consensus       285 ~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~~~~~  337 (349)
T 1jmx_B          285 RKLIKAANLD-HTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLPGG  337 (349)
T ss_dssp             TEEEEEEECS-SCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEECSSS
T ss_pred             CeEEEEEcCC-CCccceEECCCCCEEEEecCCCeEEEEeccccceeeeeecCCC
Confidence            9988777633 3467999999999998888899999999999999888765443

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.86  E-value=4.5e-20  Score=202.25  Aligned_cols=278  Identities=12%  Similarity=0.094  Sum_probs=181.5

Q ss_pred             ceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccc-cCCCCeEEEEECCCCCEEEEEeCC
Q 008496          217 EVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTN-EKSKDVTTLDWNGEGTLLATGSYD  295 (563)
Q Consensus       217 ~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~V~~l~~s~~g~~l~sg~~d  295 (563)
                      ....++|+|+|.+|+++  |+.|++|++.++...             ..+.++.. ........++|||||++|+.++.+
T Consensus        18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~   82 (740)
T 4a5s_A           18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSS-------------VFLENSTFDEFGHSINDYSISPDGQFILLEYNY   82 (740)
T ss_dssp             CCCCEEECSSSEEEEEE--TTEEEEEETTTCCEE-------------EEECTTTTTTCCSCCCEEEECTTSSEEEEEEEE
T ss_pred             cccccEECCCCcEEEEc--CCcEEEEECCCCceE-------------EEEechhhhhhcccccceEECCCCCEEEEEECC
Confidence            35678999999999986  999999999876421             11111111 111123458999999999999876


Q ss_pred             ---------CeEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEee-ecccCeEEEec
Q 008496          296 ---------GQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFE-FHSGPTLDVDW  365 (563)
Q Consensus       296 ---------g~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~-~~~~~~~~~~~  365 (563)
                               +.+.+||..+.....+..|.+.+...+|||+|+.|+.+ .|+.|.+||+.++...+... .+...+     
T Consensus        83 ~~~~r~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~-----  156 (740)
T 4a5s_A           83 VKQWRHSYTASYDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDII-----  156 (740)
T ss_dssp             EECSSSCEEEEEEEEETTTTEECCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTE-----
T ss_pred             eeeEEEccceEEEEEECCCCcEEEcccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceEEEcCCCCccce-----
Confidence                     56779999877666778888899999999999999887 57899999998876443211 111001     


Q ss_pred             CCCceEEEEeCCCeEEEEEcCCCcceeeecCCC---------cceeEEEECCCCCEEEEEeCC-----------------
Q 008496          366 RNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQ---------GEVNCVKWDPTGSLLASCSDD-----------------  419 (563)
Q Consensus       366 ~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~---------~~i~~~~~~~~~~~las~s~d-----------------  419 (563)
                                                  +.|+.         +....+.|||||+.||.++.|                 
T Consensus       157 ----------------------------~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~  208 (740)
T 4a5s_A          157 ----------------------------YNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESL  208 (740)
T ss_dssp             ----------------------------EESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTC
T ss_pred             ----------------------------ecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCC
Confidence                                        11111         112235566666655554321                 


Q ss_pred             -------------------CcEEEEeCCC---Cc--eeeeec------ccCCCEEEEEEccCCCCCCCCCCcEEEEEE-e
Q 008496          420 -------------------VTAKIWNMKQ---DK--YVHDLR------EHSKEIYTIRWSPTGSGTNNPNQQLILASA-S  468 (563)
Q Consensus       420 -------------------g~i~iwd~~~---~~--~~~~~~------~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~-s  468 (563)
                                         .+|++||+.+   +.  ....+.      .|...+..++|+|+|.         +++.. .
T Consensus       209 ~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~---------~~~~~~~  279 (740)
T 4a5s_A          209 QYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQER---------ISLQWLR  279 (740)
T ss_dssp             SSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTE---------EEEEEEE
T ss_pred             CCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCe---------EEEEEeC
Confidence                               2588899988   63  222333      3777799999999974         23332 2


Q ss_pred             ---CCCeEEEEeCCCCe----EEE--Ee--cCCCCCEE-----EEEEcCCCCEEE-EEeC-C--CcEEEEecCCCeeEEE
Q 008496          469 ---FDSTVKLWDVELGK----LLY--SL--NGHREPVY-----SLAFSPTGEYLA-SGSL-D--KSMHIWSLKEGKIVKT  528 (563)
Q Consensus       469 ---~dg~i~iwd~~~~~----~~~--~~--~~h~~~i~-----~l~~spdg~~la-sgs~-d--g~v~iw~~~~~~~~~~  528 (563)
                         .+..|++||+.+++    +..  .+  .+|...|.     .++|||||+.|+ ..+. +  ..|.+|++.++.....
T Consensus       280 r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~l  359 (740)
T 4a5s_A          280 RIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFI  359 (740)
T ss_dssp             SSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEES
T ss_pred             CCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEec
Confidence               23479999998886    321  11  34555444     789999999887 6664 3  4688889887766554


Q ss_pred             EecCCCEEEEEEcCCCCEEEEEECC
Q 008496          529 YTGNGGIFEVCWNKEGDKIAACFAN  553 (563)
Q Consensus       529 ~~~~~~i~~l~w~~~g~~la~~~~~  553 (563)
                      ..+.-.+..+.+ +||+.|++....
T Consensus       360 T~g~~~v~~~~~-~d~~~i~f~~~~  383 (740)
T 4a5s_A          360 TKGTWEVIGIEA-LTSDYLYYISNE  383 (740)
T ss_dssp             CCSSSCEEEEEE-ECSSEEEEEESC
T ss_pred             ccCCEEEEEEEE-EeCCEEEEEEec
Confidence            445445655432 447777766543

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.86  E-value=4e-21  Score=210.22  Aligned_cols=272  Identities=13%  Similarity=0.131  Sum_probs=189.1

Q ss_pred             EEEECCCCCEEEEEeCCCeEEEEEcCCcee-EeeccCCC---CEEEEEeCCCCCEEEEeeC---------CCcEEEEECC
Q 008496          279 TLDWNGEGTLLATGSYDGQARIWSTNGDLK-CTLSKHKG---PIFSLKWNKKGDYLLTGSC---------DKTAIVWDVK  345 (563)
Q Consensus       279 ~l~~s~~g~~l~sg~~dg~i~vw~~~~~~~-~~~~~h~~---~V~~l~~~~~~~~l~s~s~---------D~~v~iwd~~  345 (563)
                      .++|+|+|+++++ +.|+.|++|+..+... ..+..|..   .|.+++|||+|++|++++.         |++|++||+.
T Consensus        20 ~~~~s~dg~~~~~-~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~   98 (719)
T 1z68_A           20 FPNWISGQEYLHQ-SADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLS   98 (719)
T ss_dssp             CCEESSSSEEEEE-CTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred             ccEECCCCeEEEE-cCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECC
Confidence            6789999965554 5699999999876443 34444433   4899999999999998876         7899999999


Q ss_pred             CCceeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeee-cCCCcce-----------------eEEEEC
Q 008496          346 TEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTF-AGHQGEV-----------------NCVKWD  407 (563)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~-~~h~~~i-----------------~~~~~~  407 (563)
                      +++....... ...+..+.|.++...++...++.|++|++..+...... .++...|                 .+++|+
T Consensus        99 ~g~~~~~~~l-~~~~~~~~~SPDG~~la~~~~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wS  177 (719)
T 1z68_A           99 NGEFVRGNEL-PRPIQYLCWSPVGSKLAYVYQNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWS  177 (719)
T ss_dssp             TTEECCSSCC-CSSBCCEEECSSTTCEEEEETTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEEC
T ss_pred             CCccccceec-CcccccceECCCCCEEEEEECCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEEC
Confidence            8876211111 23466788887665444445889999999776654332 2332222                 589999


Q ss_pred             CCCCEEEEEeCCC----------------------------------cEEEEeCCCCcee--------eeecccCCCEEE
Q 008496          408 PTGSLLASCSDDV----------------------------------TAKIWNMKQDKYV--------HDLREHSKEIYT  445 (563)
Q Consensus       408 ~~~~~las~s~dg----------------------------------~i~iwd~~~~~~~--------~~~~~~~~~i~~  445 (563)
                      |||+.||+++.|.                                  .|++||+.++...        ..+..|...+.+
T Consensus       178 PDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (719)
T 1z68_A          178 PNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSW  257 (719)
T ss_dssp             TTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEE
T ss_pred             CCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEE
Confidence            9999999988652                                  7889999887642        223457788999


Q ss_pred             EEEccCCCCCCCCCCcEEEEEEeCC----CeEEEEe----CCCCeEEEEe----cCCCCCEE-----EEEEcCCCCEEEE
Q 008496          446 IRWSPTGSGTNNPNQQLILASASFD----STVKLWD----VELGKLLYSL----NGHREPVY-----SLAFSPTGEYLAS  508 (563)
Q Consensus       446 ~~~~p~~~~~~~~~~~~~l~s~s~d----g~i~iwd----~~~~~~~~~~----~~h~~~i~-----~l~~spdg~~las  508 (563)
                      ++|+|++.         ++++....    ..|.+||    +.++++...+    .+|...+.     .++|||||+.|+.
T Consensus       258 ~~~SpD~~---------~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~  328 (719)
T 1z68_A          258 LTWVTDER---------VCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYK  328 (719)
T ss_dssp             EEESSSSE---------EEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEE
T ss_pred             eEEeCCCe---------EEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEE
Confidence            99999863         45553322    2488899    8777765444    36666666     8899999996654


Q ss_pred             --EeCCC--cEEEEecCCCeeEEEEecCCCEEEEEEcCCCCEEEEEECC-----CeEEEEEee
Q 008496          509 --GSLDK--SMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFAN-----HTVCVLDFR  562 (563)
Q Consensus       509 --gs~dg--~v~iw~~~~~~~~~~~~~~~~i~~l~w~~~g~~la~~~~~-----~~v~v~~~~  562 (563)
                        ...+|  .|.+|++.+++......+...+..+.|. +|+.|++...+     +...||.+.
T Consensus       329 ~~~~~~g~~~l~~~~~~~~~~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~  390 (719)
T 1z68_A          329 IFSDKDGYKHIHYIKDTVENAIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRIS  390 (719)
T ss_dssp             EEECTTSCEEEEEESSCSTTCEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEE
T ss_pred             EEEccCCceEEEEEECCCCceEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEe
Confidence              44555  5777788777643222234457777766 89888887765     677787654

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.85  E-value=1.9e-19  Score=181.45  Aligned_cols=274  Identities=13%  Similarity=0.106  Sum_probs=183.5

Q ss_pred             EEECCCCCEEEEEeC-CC--eEEEEEcCCceeE-eeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeee
Q 008496          280 LDWNGEGTLLATGSY-DG--QARIWSTNGDLKC-TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEF  355 (563)
Q Consensus       280 l~~s~~g~~l~sg~~-dg--~i~vw~~~~~~~~-~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~  355 (563)
                      .+|||||++|+.++. +|  .|.+|+..+.... ....+...+..+.|+|+|++|+.++.++.+++||+.+++....+..
T Consensus        41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~  120 (388)
T 3pe7_A           41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQV  120 (388)
T ss_dssp             CCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEEC
T ss_pred             ccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeec
Confidence            689999999999887 66  4888887655443 4445555555778999999999999999999999999887666555


Q ss_pred             cccCeEEEec--CCCc-eEEE----------------------EeCCCeEEEEEcCCCcceeeecCCCcceeEEEECC-C
Q 008496          356 HSGPTLDVDW--RNNV-SFAT----------------------SSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDP-T  409 (563)
Q Consensus       356 ~~~~~~~~~~--~~~~-~~~~----------------------~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~-~  409 (563)
                      +...+....|  ..+. .++.                      ...+..|+++++.++... .+..+...+..++|+| +
T Consensus       121 ~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~-~l~~~~~~~~~~~~sp~d  199 (388)
T 3pe7_A          121 PAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGEST-VILQENQWLGHPIYRPYD  199 (388)
T ss_dssp             CTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEE-EEEEESSCEEEEEEETTE
T ss_pred             hhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceE-EeecCCccccccEECCCC
Confidence            4443322333  2332 3321                      123467899998877543 4445666789999999 9


Q ss_pred             CCEEEEEeCC------CcEEEEeCCCCceeeeecccC--CCEEEEEEccCCCCCCCCCCcEEEEEEeCCC---eEEEEeC
Q 008496          410 GSLLASCSDD------VTAKIWNMKQDKYVHDLREHS--KEIYTIRWSPTGSGTNNPNQQLILASASFDS---TVKLWDV  478 (563)
Q Consensus       410 ~~~las~s~d------g~i~iwd~~~~~~~~~~~~~~--~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg---~i~iwd~  478 (563)
                      |+.|+.++.+      ..|.++|...+.. ..+..+.  ..+..+.|+|+|..       +++++...++   .|++||+
T Consensus       200 g~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~spdg~~-------l~~~~~~~~~~~~~l~~~d~  271 (388)
T 3pe7_A          200 DSTVAFCHEGPHDLVDARMWLINEDGTNM-RKVKTHAEGESCTHEFWVPDGSA-------LVYVSYLKGSPDRFIYSADP  271 (388)
T ss_dssp             EEEEEEEECSCTTTSSCSEEEEETTSCCC-EESCCCCTTEEEEEEEECTTSSC-------EEEEEEETTCCCEEEEEECT
T ss_pred             CCEEEEEEecCCCCCcceEEEEeCCCCce-EEeeeCCCCcccccceECCCCCE-------EEEEecCCCCCcceEEEEec
Confidence            9999887764      3677788766543 3344343  35778899999862       2222322222   3999999


Q ss_pred             CCCeE--EEEecCCCCC---EEEEEEcCCCCEEEEE---------eCCCcEEEEecCCCeeEEEEecCC-----------
Q 008496          479 ELGKL--LYSLNGHREP---VYSLAFSPTGEYLASG---------SLDKSMHIWSLKEGKIVKTYTGNG-----------  533 (563)
Q Consensus       479 ~~~~~--~~~~~~h~~~---i~~l~~spdg~~lasg---------s~dg~v~iw~~~~~~~~~~~~~~~-----------  533 (563)
                      .+++.  +..+.++...   ...++|||||++|+..         ..+..|++||+.++++........           
T Consensus       272 ~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~  351 (388)
T 3pe7_A          272 ETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQHRVARHDTSWKVFEGDRQV  351 (388)
T ss_dssp             TTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEEEEEEECCCCCCCBTTBSST
T ss_pred             CCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceEEeccccCccccccccccc
Confidence            98874  3333331100   1123799999988753         456789999999887654443333           


Q ss_pred             CEEEEEEcCCCCEEEEEEC-CCeEEEEEee
Q 008496          534 GIFEVCWNKEGDKIAACFA-NHTVCVLDFR  562 (563)
Q Consensus       534 ~i~~l~w~~~g~~la~~~~-~~~v~v~~~~  562 (563)
                      .+..++|+|||+.|++++. ++...||.+.
T Consensus       352 ~~~~~~~spDg~~l~~~s~~~g~~~l~~~~  381 (388)
T 3pe7_A          352 THPHPSFTPDDKQILFTSDVHGKPALYLAT  381 (388)
T ss_dssp             TCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred             CCCCccCCCCCCEEEEEecCCCceeEEEEE
Confidence            3678899999999987754 5666666543

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.84  E-value=5.6e-18  Score=169.02  Aligned_cols=256  Identities=12%  Similarity=0.080  Sum_probs=171.7

Q ss_pred             CCeEEEEECCCCCEEEEEeCC----CeEEEEEcCC---cee--EeeccCCCCEEEEEeCCCCCEEEEee-CCCcEEEEEC
Q 008496          275 KDVTTLDWNGEGTLLATGSYD----GQARIWSTNG---DLK--CTLSKHKGPIFSLKWNKKGDYLLTGS-CDKTAIVWDV  344 (563)
Q Consensus       275 ~~V~~l~~s~~g~~l~sg~~d----g~i~vw~~~~---~~~--~~~~~h~~~V~~l~~~~~~~~l~s~s-~D~~v~iwd~  344 (563)
                      ..+..++|+|+|++|++++.+    +.+.+|+.+.   .+.  .....+......+++  ++++|++++ .++++.+|++
T Consensus        50 ~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~  127 (361)
T 3scy_A           50 ANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPI  127 (361)
T ss_dssp             SCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEB
T ss_pred             CCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEe
Confidence            456779999999999999886    7999998653   222  233345556777887  788777666 5889999998


Q ss_pred             CCCceeEEe---eecc-----------cCeEEEecCCCc--eEEEEeCCCeEEEEEcCCCcc------e-------eeec
Q 008496          345 KTEEWKQQF---EFHS-----------GPTLDVDWRNNV--SFATSSTDNMIYVCKIGENRP------I-------KTFA  395 (563)
Q Consensus       345 ~~~~~~~~~---~~~~-----------~~~~~~~~~~~~--~~~~~~~d~~i~~~~~~~~~~------~-------~~~~  395 (563)
                      ........+   ..+.           ..+..+.|.++.  .+++...++.|++|++.....      +       ....
T Consensus       128 ~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~  207 (361)
T 3scy_A          128 GQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKV  207 (361)
T ss_dssp             CTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEEC
T ss_pred             CCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceec
Confidence            754322111   1111           123557776654  345555688999998875431      1       1122


Q ss_pred             CCCcceeEEEECCCCCEEEEEe-CCCcEEEEeCCCCce--eeee---cccCCCEEEEEEccCCCCCCCCCCcEEEEEEeC
Q 008496          396 GHQGEVNCVKWDPTGSLLASCS-DDVTAKIWNMKQDKY--VHDL---REHSKEIYTIRWSPTGSGTNNPNQQLILASASF  469 (563)
Q Consensus       396 ~h~~~i~~~~~~~~~~~las~s-~dg~i~iwd~~~~~~--~~~~---~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~  469 (563)
                      .+...+..++|+|+|+++++++ .++.|.+|++.++..  +..+   ..+......++|+|+|.        .++++...
T Consensus       208 ~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~--------~l~v~~~~  279 (361)
T 3scy_A          208 APGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGK--------YLYASNRL  279 (361)
T ss_dssp             CTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSS--------EEEEEECS
T ss_pred             CCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCC--------EEEEECCC
Confidence            3345578999999999887766 689999999986654  2222   22334568999999985        23344545


Q ss_pred             -CCeEEEEeCC--CCe--EEEEecCCCCCEEEEEEcCCCCEEEEEe-CCCcEEEE--ecCCCeeEEEEe--cCCCEEEEE
Q 008496          470 -DSTVKLWDVE--LGK--LLYSLNGHREPVYSLAFSPTGEYLASGS-LDKSMHIW--SLKEGKIVKTYT--GNGGIFEVC  539 (563)
Q Consensus       470 -dg~i~iwd~~--~~~--~~~~~~~h~~~i~~l~~spdg~~lasgs-~dg~v~iw--~~~~~~~~~~~~--~~~~i~~l~  539 (563)
                       ++.|.+|++.  +++  .+..+.. ...+.+++|+|||++|++++ .++.|.+|  |..+|++.....  ....+.++.
T Consensus       280 ~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~  358 (361)
T 3scy_A          280 KADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDKPVCLK  358 (361)
T ss_dssp             SSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECSSEEEEE
T ss_pred             CCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCCCCeEEE
Confidence             6899999985  444  3444444 45678999999999998887 67899996  555777654321  224577787


Q ss_pred             Ec
Q 008496          540 WN  541 (563)
Q Consensus       540 w~  541 (563)
                      |.
T Consensus       359 ~~  360 (361)
T 3scy_A          359 FV  360 (361)
T ss_dssp             EE
T ss_pred             Ec
Confidence            75

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.82  E-value=2.4e-17  Score=164.83  Aligned_cols=265  Identities=14%  Similarity=0.133  Sum_probs=177.2

Q ss_pred             EEEEEeCC--CeEEEEEc--C-CceeEe--ec-cCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECC-CCceeEEeeec-c
Q 008496          288 LLATGSYD--GQARIWST--N-GDLKCT--LS-KHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVK-TEEWKQQFEFH-S  357 (563)
Q Consensus       288 ~l~sg~~d--g~i~vw~~--~-~~~~~~--~~-~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~-~~~~~~~~~~~-~  357 (563)
                      ++++|++.  +.|.+|+.  . +.+...  .. .....+..++|+|+|++|++++.+ +|.+||+. +++........ .
T Consensus         4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~   82 (365)
T 1jof_A            4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIG   82 (365)
T ss_dssp             EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECC
T ss_pred             EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecC
Confidence            35556654  46777654  2 333211  11 233467789999999999999888 99999997 77665433321 1


Q ss_pred             cCeEEEecCCCce--EE-EEe-------------CCCeEEEEEcCC-Ccceeeec----CCCcceeEEEECCCCCEEEEE
Q 008496          358 GPTLDVDWRNNVS--FA-TSS-------------TDNMIYVCKIGE-NRPIKTFA----GHQGEVNCVKWDPTGSLLASC  416 (563)
Q Consensus       358 ~~~~~~~~~~~~~--~~-~~~-------------~d~~i~~~~~~~-~~~~~~~~----~h~~~i~~~~~~~~~~~las~  416 (563)
                      +.+..+.|.++..  ++ ++.             .++.+.+|++.. +.....+.    .+...+.+++|+|+|++|+++
T Consensus        83 g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~  162 (365)
T 1jof_A           83 GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSA  162 (365)
T ss_dssp             SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEE
T ss_pred             CCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEE
Confidence            2344466766655  33 332             688999999974 33332222    245678999999999988776


Q ss_pred             eC-CCcEEEEeCC-CCcee--eeec--ccCCCEEEEEEccCCCCCCCCCCcEEEEEEe-CCCeEEEEeCC--CCeEEE--
Q 008496          417 SD-DVTAKIWNMK-QDKYV--HDLR--EHSKEIYTIRWSPTGSGTNNPNQQLILASAS-FDSTVKLWDVE--LGKLLY--  485 (563)
Q Consensus       417 s~-dg~i~iwd~~-~~~~~--~~~~--~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s-~dg~i~iwd~~--~~~~~~--  485 (563)
                      .. ++.|++|++. +++..  ..+.  .|...+..++|+|+|.         +|++++ .++.|.+|++.  +++...  
T Consensus       163 ~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~---------~l~v~~~~~~~v~v~~~~~~~g~~~~~~  233 (365)
T 1jof_A          163 DLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGN---------YLYALMEAGNRICEYVIDPATHMPVYTH  233 (365)
T ss_dssp             ETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSS---------EEEEEETTTTEEEEEEECTTTCCEEEEE
T ss_pred             cCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCC---------EEEEEECCCCeEEEEEEeCCCCcEEEcc
Confidence            54 6799999998 66542  2333  2356689999999885         444444 57899999765  565432  


Q ss_pred             -Eec-------CCCC------CEEEEE-EcCCCCEEEEEeCC-C-----cEEEEecC-CCeeEEE---Eec-CCCEEEEE
Q 008496          486 -SLN-------GHRE------PVYSLA-FSPTGEYLASGSLD-K-----SMHIWSLK-EGKIVKT---YTG-NGGIFEVC  539 (563)
Q Consensus       486 -~~~-------~h~~------~i~~l~-~spdg~~lasgs~d-g-----~v~iw~~~-~~~~~~~---~~~-~~~i~~l~  539 (563)
                       .+.       +|..      .+..++ |||||++|++++.+ .     .|.+|++. +|++...   ... ...+..++
T Consensus       234 ~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a  313 (365)
T 1jof_A          234 HSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNA  313 (365)
T ss_dssp             EEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCC
T ss_pred             ceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccce
Confidence             221       1222      478999 99999998876543 2     89999996 6775542   222 23456789


Q ss_pred             EcC---CCCEEEEEEC-CCeEEEEEee
Q 008496          540 WNK---EGDKIAACFA-NHTVCVLDFR  562 (563)
Q Consensus       540 w~~---~g~~la~~~~-~~~v~v~~~~  562 (563)
                      |+|   ||++|+++.. ++.|.||++.
T Consensus       314 ~sp~~~dg~~l~v~~~~~~~v~v~~~~  340 (365)
T 1jof_A          314 VSPCPWSDEWMAITDDQEGWLEIYRWK  340 (365)
T ss_dssp             EEECTTCTTEEEEECSSSCEEEEEEEE
T ss_pred             ecCCCcCCCEEEEEEcCCCeEEEEEEc
Confidence            999   8999999876 4899999874

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.81  E-value=1.6e-18  Score=174.93  Aligned_cols=271  Identities=12%  Similarity=0.050  Sum_probs=179.2

Q ss_pred             eEEEEECCCCCEEEEEeCC---CeEEEEEcCCceeEeeccCCCCEE-EEEeCCCCCEEEEeeCCCcEEEEECCCCceeEE
Q 008496          277 VTTLDWNGEGTLLATGSYD---GQARIWSTNGDLKCTLSKHKGPIF-SLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQ  352 (563)
Q Consensus       277 V~~l~~s~~g~~l~sg~~d---g~i~vw~~~~~~~~~~~~h~~~V~-~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~  352 (563)
                      +..++|||||++|+.....   ..+.+|+..+.....+..+...+. .+.|+|+|++|+.++.++.|.+||+.+++....
T Consensus        38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~  117 (396)
T 3c5m_A           38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQVI  117 (396)
T ss_dssp             TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEE
T ss_pred             eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEEE
Confidence            5567899999998877543   478888987665555544444333 378999999999999999999999998876655


Q ss_pred             eeecccCeEE-------------------EecCCCce-EEEE-----eCCCeEEEEEcCCCcceeeecCCCcceeEEEEC
Q 008496          353 FEFHSGPTLD-------------------VDWRNNVS-FATS-----STDNMIYVCKIGENRPIKTFAGHQGEVNCVKWD  407 (563)
Q Consensus       353 ~~~~~~~~~~-------------------~~~~~~~~-~~~~-----~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~  407 (563)
                      +..+.....+                   ..|.++.. ++..     ..+..|++|++..++..... .+...+..+.|+
T Consensus       118 ~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~s  196 (396)
T 3c5m_A          118 YTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH-QDTAWLGHPIYR  196 (396)
T ss_dssp             EECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE-EESSCEEEEEEE
T ss_pred             EecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeec-cCCcccccceEC
Confidence            4433321111                   12222211 1111     34567899998876654443 466678899999


Q ss_pred             C-CCCEEEEEeCC------CcEEEEeCCCCceeeeeccc--CCCEEEEEEccCCCCCCCCCCcEEEEEEeCC-----CeE
Q 008496          408 P-TGSLLASCSDD------VTAKIWNMKQDKYVHDLREH--SKEIYTIRWSPTGSGTNNPNQQLILASASFD-----STV  473 (563)
Q Consensus       408 ~-~~~~las~s~d------g~i~iwd~~~~~~~~~~~~~--~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~d-----g~i  473 (563)
                      | +++.|+.++.+      ..|.+||+.++... .+..+  ...+..+.|+|+|.         .|+.++.+     +.|
T Consensus       197 p~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~spdg~---------~l~~~~~~~~~~~~~l  266 (396)
T 3c5m_A          197 PFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVR-KIKEHAEGESCTHEFWIPDGS---------AMAYVSYFKGQTDRVI  266 (396)
T ss_dssp             TTEEEEEEEEECSCSSSCSCCCEEEETTSCCCE-ESSCCCTTEEEEEEEECTTSS---------CEEEEEEETTTCCEEE
T ss_pred             CCCCCEEEEEecCCCCCCCceEEEEECCCCcee-EeeccCCCccccceEECCCCC---------EEEEEecCCCCccceE
Confidence            9 78877776653      35888888765533 23323  23578899999885         23333332     459


Q ss_pred             EEEeCCCCeEEEEecCCCCCEEEEEEcC-CCCEEEEEe----------------CCCcEEEEecCCCeeEEEEecCC---
Q 008496          474 KLWDVELGKLLYSLNGHREPVYSLAFSP-TGEYLASGS----------------LDKSMHIWSLKEGKIVKTYTGNG---  533 (563)
Q Consensus       474 ~iwd~~~~~~~~~~~~h~~~i~~l~~sp-dg~~lasgs----------------~dg~v~iw~~~~~~~~~~~~~~~---  533 (563)
                      ++||+.+++...... .. ... ++|+| ||++|++++                .++.|++||+.++++........   
T Consensus       267 ~~~d~~~g~~~~l~~-~~-~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~  343 (396)
T 3c5m_A          267 YKANPETLENEEVMV-MP-PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQKLCKHSTSWD  343 (396)
T ss_dssp             EEECTTTCCEEEEEE-CC-SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCCEEEECCCCCC
T ss_pred             EEEECCCCCeEEeee-CC-CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceEEccCCCCccc
Confidence            999998886543222 11 233 89999 999988765                34789999998887543333322   


Q ss_pred             --------CEEEEEEcCCCCEEEEEEC-CCeEEEEEe
Q 008496          534 --------GIFEVCWNKEGDKIAACFA-NHTVCVLDF  561 (563)
Q Consensus       534 --------~i~~l~w~~~g~~la~~~~-~~~v~v~~~  561 (563)
                              .+..++|+|||+.|++++. ++...||-+
T Consensus       344 ~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~  380 (396)
T 3c5m_A          344 VLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIA  380 (396)
T ss_dssp             CBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred             cccccccCCCCCceEccCCCeEEEEecCCCCceEEEE
Confidence                    1567899999999988765 455555543

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.81  E-value=4.5e-18  Score=184.12  Aligned_cols=285  Identities=9%  Similarity=0.043  Sum_probs=185.9

Q ss_pred             EecCCCCceEEEEECCCCCEEEEe--eCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeE---------
Q 008496          210 ILEGHTSEVCACAWSPAGSLLASG--SGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVT---------  278 (563)
Q Consensus       210 ~l~~h~~~V~~~~~sp~~~~latg--s~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~---------  278 (563)
                      .+.+|...|..++|++++-+++++  +.++..+||....+...             +.+..    +...|.         
T Consensus        18 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------------~~l~~----~~~~~~~~~~~~~~~   80 (662)
T 3azo_A           18 LVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAE-------------ESALP----APWNVRNRVFEYSGF   80 (662)
T ss_dssp             HHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCE-------------EESSC----TTCCBCCCGGGTCCC
T ss_pred             HHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCc-------------ceeCC----CCccccccccccCCc
Confidence            467889999999999887777777  56889999986332110             01100    111222         


Q ss_pred             EEEEC--CCCCE-EEEEeC-CCeEEEEEcC--C-ceeEeecc-----CCCCEEEEEeCCCCCEEEEeeCC----------
Q 008496          279 TLDWN--GEGTL-LATGSY-DGQARIWSTN--G-DLKCTLSK-----HKGPIFSLKWNKKGDYLLTGSCD----------  336 (563)
Q Consensus       279 ~l~~s--~~g~~-l~sg~~-dg~i~vw~~~--~-~~~~~~~~-----h~~~V~~l~~~~~~~~l~s~s~D----------  336 (563)
                      ...|+  |||+. |+.++. +..|.+|+..  + .....+..     |...+.+++|+|+|++|++++.|          
T Consensus        81 ~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~  160 (662)
T 3azo_A           81 PWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVR  160 (662)
T ss_dssp             CEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEE
T ss_pred             cceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCce
Confidence            34455  99998 776654 5677788876  3 44445555     67788999999999999988866          


Q ss_pred             CcEEEEECCCCceeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCC-Ccceeeec-CCCcceeEEEECCCCCEEE
Q 008496          337 KTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGE-NRPIKTFA-GHQGEVNCVKWDPTGSLLA  414 (563)
Q Consensus       337 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~-~~~~~~~~-~h~~~i~~~~~~~~~~~la  414 (563)
                      .+|.+||+.+....                                    . .. ...+. .+...+..++|+|||+.|+
T Consensus       161 ~~i~~~~~~~~~~~------------------------------------~~~~-~~~l~~~~~~~~~~~~~SpDG~~la  203 (662)
T 3azo_A          161 RFLAAVPLDGSAAA------------------------------------DRSA-VRELSDDAHRFVTGPRLSPDGRQAV  203 (662)
T ss_dssp             EEEEEEETTSTTTT------------------------------------CGGG-SEESSCSCSSEECCCEECTTSSEEE
T ss_pred             eEEEEEECCCCccc------------------------------------cCCc-eeEEEecCCCcccCceECCCCCEEE
Confidence            34555555441000                                    0 11 22233 4445677899999999999


Q ss_pred             EEeCC--------CcEEEEeCC-CC---ceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCC--eEEEEeCCC
Q 008496          415 SCSDD--------VTAKIWNMK-QD---KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDS--TVKLWDVEL  480 (563)
Q Consensus       415 s~s~d--------g~i~iwd~~-~~---~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg--~i~iwd~~~  480 (563)
                      .++.+        ..|++||+. ++   ........|...+..+.|+|+|.         ++++++.++  .|.+||+.+
T Consensus       204 ~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~---------l~~~~~~~~~~~l~~~~~~~  274 (662)
T 3azo_A          204 WLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGS---------LIVATDRTGWWNLHRVDPAT  274 (662)
T ss_dssp             EEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSC---------EEEEECTTSSCEEEEECTTT
T ss_pred             EEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCe---------EEEEECCCCCeEEEEEECCC
Confidence            88755        479999998 46   33333344567899999999885         677788888  677777766


Q ss_pred             CeEEEEecCCCCC--------EEEEEEcCCCCEEEEEeCCCcEEEE--ecCCCeeEEEEecCC-CEEEEEEcCCCCEEEE
Q 008496          481 GKLLYSLNGHREP--------VYSLAFSPTGEYLASGSLDKSMHIW--SLKEGKIVKTYTGNG-GIFEVCWNKEGDKIAA  549 (563)
Q Consensus       481 ~~~~~~~~~h~~~--------i~~l~~spdg~~lasgs~dg~v~iw--~~~~~~~~~~~~~~~-~i~~l~w~~~g~~la~  549 (563)
                      ++.......+...        +.+++|+|+++++++++. +.++||  |+.+++ ++.+.... .+..+ |+++|+.++.
T Consensus       275 ~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~-~~~l~~~~~~~~~~-~s~~~~~~~~  351 (662)
T 3azo_A          275 GAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE-LVDAAGPWTEWAAT-LTVSGTRAVG  351 (662)
T ss_dssp             CCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE-EEECCSSCCEEEEE-EEEETTEEEE
T ss_pred             CceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc-EEEecCCCCeEEEE-EecCCCEEEE
Confidence            7654333333222        567899999999999998 999999  555565 45554433 34444 3566665543


Q ss_pred             --EECCCeEEEEE
Q 008496          550 --CFANHTVCVLD  560 (563)
Q Consensus       550 --~~~~~~v~v~~  560 (563)
                        ++.+....||.
T Consensus       352 ~~~~~~~~~~i~~  364 (662)
T 3azo_A          352 VAASPRTAYEVVE  364 (662)
T ss_dssp             EEEETTEEEEEEE
T ss_pred             EEcCCCCCCEEEE
Confidence              34444444543

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.81  E-value=1e-17  Score=168.81  Aligned_cols=285  Identities=12%  Similarity=-0.000  Sum_probs=182.2

Q ss_pred             eeEecCCCCceEE-----EEECCCCCEEEEeeC-CCc--EEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEE
Q 008496          208 VTILEGHTSEVCA-----CAWSPAGSLLASGSG-DST--ARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTT  279 (563)
Q Consensus       208 ~~~l~~h~~~V~~-----~~~sp~~~~latgs~-D~~--i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~  279 (563)
                      +..|..|...+..     .+|||||++||.++. ++.  +.+|++.++...              ..   ...+...+..
T Consensus        23 ~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~--------------~l---t~~~~~~~~~   85 (388)
T 3pe7_A           23 VTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVAT--------------QL---TEGRGDNTFG   85 (388)
T ss_dssp             EEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEE--------------EC---CCSSCBCSSS
T ss_pred             eEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceE--------------Ee---eeCCCCCccc
Confidence            3455566655555     789999999998887 674  777777654311              00   0111222335


Q ss_pred             EEECCCCCEEEEEeCCCeEEEEEcCCce-eEeeccCCCCEEEEE--eCCCCCEEEEe----------------------e
Q 008496          280 LDWNGEGTLLATGSYDGQARIWSTNGDL-KCTLSKHKGPIFSLK--WNKKGDYLLTG----------------------S  334 (563)
Q Consensus       280 l~~s~~g~~l~sg~~dg~i~vw~~~~~~-~~~~~~h~~~V~~l~--~~~~~~~l~s~----------------------s  334 (563)
                      +.|+|||+.|+.++.++.+++|+..+.. ......+...+....  ++|++.+++..                      .
T Consensus        86 ~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (388)
T 3pe7_A           86 GFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTK  165 (388)
T ss_dssp             CEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGC
T ss_pred             eEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccC
Confidence            6899999999999999999999987543 334444555454444  48999988742                      2


Q ss_pred             CCCcEEEEECCCCceeEEeeecccCeEEEecCC-Cc-eEEEEeC------CCeEEEEEcCCCcceeeecCCC--cceeEE
Q 008496          335 CDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN-NV-SFATSST------DNMIYVCKIGENRPIKTFAGHQ--GEVNCV  404 (563)
Q Consensus       335 ~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~------d~~i~~~~~~~~~~~~~~~~h~--~~i~~~  404 (563)
                      .+..|.+||+.+++.... ..+...+..+.|.+ +. .++.+..      ...|++++....... .+..+.  ..+..+
T Consensus       166 ~~~~l~~~d~~~g~~~~l-~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~  243 (388)
T 3pe7_A          166 PCCRLMRVDLKTGESTVI-LQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMR-KVKTHAEGESCTHE  243 (388)
T ss_dssp             CCEEEEEEETTTCCEEEE-EEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCE-ESCCCCTTEEEEEE
T ss_pred             CcceEEEEECCCCceEEe-ecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceE-EeeeCCCCcccccc
Confidence            446899999998875543 33445567778876 54 3444443      337888887655443 333333  357789


Q ss_pred             EECCCCCEEEEEeC-C----CcEEEEeCCCCcee--eeecccCCC---EEEEEEccCCCCCCCCCCcEEEEE--------
Q 008496          405 KWDPTGSLLASCSD-D----VTAKIWNMKQDKYV--HDLREHSKE---IYTIRWSPTGSGTNNPNQQLILAS--------  466 (563)
Q Consensus       405 ~~~~~~~~las~s~-d----g~i~iwd~~~~~~~--~~~~~~~~~---i~~~~~~p~~~~~~~~~~~~~l~s--------  466 (563)
                      +|+|||+.|+..+. +    +.|.+||+.+++..  ..+..+...   ...+.|+|+|..        ++++        
T Consensus       244 ~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~--------l~~~~~~~~~~~  315 (388)
T 3pe7_A          244 FWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSD--------APVDVQDDSGYK  315 (388)
T ss_dssp             EECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECC--------C-----------
T ss_pred             eECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCc--------ceeEeeeccccc
Confidence            99999997765443 2    23999999888642  222221000   011267887752        2222        


Q ss_pred             EeCCCeEEEEeCCCCeEEEEecCCCC-----------CEEEEEEcCCCCEEEEEe-CCCcEEEEec
Q 008496          467 ASFDSTVKLWDVELGKLLYSLNGHRE-----------PVYSLAFSPTGEYLASGS-LDKSMHIWSL  520 (563)
Q Consensus       467 ~s~dg~i~iwd~~~~~~~~~~~~h~~-----------~i~~l~~spdg~~lasgs-~dg~v~iw~~  520 (563)
                      ...+..|++||+.+++. ..+..+..           .+.+++|||||++|+.++ .+|...||.+
T Consensus       316 ~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~  380 (388)
T 3pe7_A          316 IENDPFLYVFNMKNGTQ-HRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLA  380 (388)
T ss_dssp             -CCCCEEEEEETTTTEE-EEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred             cCCCCEEEEEeccCCce-EEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEE
Confidence            25577999999998765 34544544           578899999999888766 4676666654

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.80  E-value=2.8e-17  Score=163.80  Aligned_cols=280  Identities=9%  Similarity=0.100  Sum_probs=188.6

Q ss_pred             CCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEEeC----------CCeEEEEEcC
Q 008496          235 GDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSY----------DGQARIWSTN  304 (563)
Q Consensus       235 ~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~----------dg~i~vw~~~  304 (563)
                      .|+.+.+||..+++..             ..+..    ...+  .++|+|||++++++..          ++.|.+||..
T Consensus        29 ~d~~v~v~D~~t~~~~-------------~~i~~----g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~   89 (361)
T 2oiz_A           29 TESRVHVYDYTNGKFL-------------GMVPT----AFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDAD   89 (361)
T ss_dssp             GGCEEEEEETTTCCEE-------------EEEEC----CEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETT
T ss_pred             ccCeEEEEECCCCeEE-------------EEecC----CCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECc
Confidence            4789999998665321             11111    1122  7899999999999863          5789999976


Q ss_pred             C-ceeEeecc------CCCCEEEEEeCCCCCEEEEeeC--CCcEEEEECCCCceeEE-eeecccCeEEEecCCCceEEEE
Q 008496          305 G-DLKCTLSK------HKGPIFSLKWNKKGDYLLTGSC--DKTAIVWDVKTEEWKQQ-FEFHSGPTLDVDWRNNVSFATS  374 (563)
Q Consensus       305 ~-~~~~~~~~------h~~~V~~l~~~~~~~~l~s~s~--D~~v~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  374 (563)
                      . +....+..      +......++++|+|++|++++.  +++|.+||+.+++.+.. +.........+.......+++.
T Consensus        90 t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~~~v~~~p~~~~~~~~~  169 (361)
T 2oiz_A           90 KLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGCWSVIPQPNRPRSFMTI  169 (361)
T ss_dssp             TCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTEEEEEECTTSSSEEEEE
T ss_pred             CCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCcceeEEcCCCCeeEEEE
Confidence            3 44444432      2234567899999999998864  68999999999887765 4322111111222234577888


Q ss_pred             eCCCeEEEEEcCC-Ccce------eeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCcee--eeecc------c
Q 008496          375 STDNMIYVCKIGE-NRPI------KTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYV--HDLRE------H  439 (563)
Q Consensus       375 ~~d~~i~~~~~~~-~~~~------~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~--~~~~~------~  439 (563)
                      +.|+.+.+++... ++..      ..+..+...+ .+.+++++..++..+.++.+.++|+......  ..+..      +
T Consensus       170 ~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~  248 (361)
T 2oiz_A          170 CGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKA  248 (361)
T ss_dssp             ETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHH
T ss_pred             CCCCcEEEEEECCCCcEeeeccccceEcCCCCce-EEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccc
Confidence            8899988888754 3322      1222222222 2333567777777888999999998654321  11110      0


Q ss_pred             C----CCEEEEEEccCCCCCCCCCCcEEEEEEe----------CCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCE
Q 008496          440 S----KEIYTIRWSPTGSGTNNPNQQLILASAS----------FDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEY  505 (563)
Q Consensus       440 ~----~~i~~~~~~p~~~~~~~~~~~~~l~s~s----------~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~  505 (563)
                      .    .....++++|++.        .++++.+          ..+.|.+||+.+++.+.++..+.  +.+++|+|||++
T Consensus       249 ~~~~p~g~~~~a~~~dg~--------~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~  318 (361)
T 2oiz_A          249 KNWVPGGYNLVGLHRASG--------RMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNL  318 (361)
T ss_dssp             TTCEECCSSCEEEETTTT--------EEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTE
T ss_pred             cccccCCeeEEEEecCCC--------eEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCE
Confidence            0    0011256677653        3444443          13589999999999999998776  899999999999


Q ss_pred             EEEEeCCCcEEEEecCCC--eeEEEEe-cCCCEEEEEEcCCCC
Q 008496          506 LASGSLDKSMHIWSLKEG--KIVKTYT-GNGGIFEVCWNKEGD  545 (563)
Q Consensus       506 lasgs~dg~v~iw~~~~~--~~~~~~~-~~~~i~~l~w~~~g~  545 (563)
                      |++++. +.|.+||..++  ++++++. .......++++|+|.
T Consensus       319 l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          319 MLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG  360 (361)
T ss_dssp             EEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred             EEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence            998887 99999999999  9999874 455678999999985

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.79  E-value=3.5e-16  Score=150.52  Aligned_cols=235  Identities=14%  Similarity=0.262  Sum_probs=176.0

Q ss_pred             CCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCceeEeec------cCCCCEEEEEe-CCCCCEEEEeeC-CCcEEEEECC
Q 008496          274 SKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLS------KHKGPIFSLKW-NKKGDYLLTGSC-DKTAIVWDVK  345 (563)
Q Consensus       274 ~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~~~~~~------~h~~~V~~l~~-~~~~~~l~s~s~-D~~v~iwd~~  345 (563)
                      ...+.+++++++|+++++...++.|++|+.++.....+.      .|...+.++++ .++++.+++... ++.|.+|| .
T Consensus        29 ~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-~  107 (286)
T 1q7f_A           29 FTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-Q  107 (286)
T ss_dssp             BSCEEEEEECTTCCEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-T
T ss_pred             cCCCceEEECCCCCEEEEECCCCEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-C
Confidence            356889999999999998889999999998887666553      24457899999 567766666543 78999998 4


Q ss_pred             CCceeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEE
Q 008496          346 TEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIW  425 (563)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iw  425 (563)
                      ++.....+.                                        ..+...+.+++++|+|+++++.+.++.|.+|
T Consensus       108 ~g~~~~~~~----------------------------------------~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~  147 (286)
T 1q7f_A          108 YGQFVRKFG----------------------------------------ATILQHPRGVTVDNKGRIIVVECKVMRVIIF  147 (286)
T ss_dssp             TSCEEEEEC----------------------------------------TTTCSCEEEEEECTTSCEEEEETTTTEEEEE
T ss_pred             CCcEEEEec----------------------------------------CccCCCceEEEEeCCCCEEEEECCCCEEEEE
Confidence            443322110                                        0123456789999999998888889999999


Q ss_pred             eCCCCceeeeec--ccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCC--CCCEEEEEEcC
Q 008496          426 NMKQDKYVHDLR--EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGH--REPVYSLAFSP  501 (563)
Q Consensus       426 d~~~~~~~~~~~--~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h--~~~i~~l~~sp  501 (563)
                      |.. ++.+..+.  .+...+..++++|++.         ++++.+.++.|++||.. ++.+..+..+  ...+..++++|
T Consensus       148 ~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~---------l~v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~  216 (286)
T 1q7f_A          148 DQN-GNVLHKFGCSKHLEFPNGVVVNDKQE---------IFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINS  216 (286)
T ss_dssp             CTT-SCEEEEEECTTTCSSEEEEEECSSSE---------EEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECT
T ss_pred             cCC-CCEEEEeCCCCccCCcEEEEECCCCC---------EEEEECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECC
Confidence            965 44444443  3445688999998763         66777778999999974 6666666443  35689999999


Q ss_pred             CCCEEEEEeCCC-cEEEEecCCCeeEEEEecCC---CEEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496          502 TGEYLASGSLDK-SMHIWSLKEGKIVKTYTGNG---GIFEVCWNKEGDKIAACFANHTVCVLDFR  562 (563)
Q Consensus       502 dg~~lasgs~dg-~v~iw~~~~~~~~~~~~~~~---~i~~l~w~~~g~~la~~~~~~~v~v~~~~  562 (563)
                      +|+++++...++ .|.+|+. +++.+..+....   .+.+++|+|+|+.+++ ..+++|.||++.
T Consensus       217 ~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~  279 (286)
T 1q7f_A          217 NGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYV  279 (286)
T ss_dssp             TCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECS
T ss_pred             CCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEcc
Confidence            999999888886 9999995 567777765432   3789999999987666 578999999874

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.79  E-value=1.3e-16  Score=156.92  Aligned_cols=248  Identities=11%  Similarity=0.140  Sum_probs=183.0

Q ss_pred             CCCeEEEEECCCCCEEEEEeCC------------------------CeEEEEEcC-CceeEeec-cCCCCEEEEEeCCCC
Q 008496          274 SKDVTTLDWNGEGTLLATGSYD------------------------GQARIWSTN-GDLKCTLS-KHKGPIFSLKWNKKG  327 (563)
Q Consensus       274 ~~~V~~l~~s~~g~~l~sg~~d------------------------g~i~vw~~~-~~~~~~~~-~h~~~V~~l~~~~~~  327 (563)
                      -..|.+++++++|+++++...+                        +.|.+||.. +.+...+. .+-....+++++|+|
T Consensus        23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g  102 (329)
T 3fvz_A           23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG  102 (329)
T ss_dssp             CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred             cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence            4679999999999999988877                        479999985 66655443 444678999999999


Q ss_pred             CEEEEeeCCCcEEEEECCCCc-eeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEE
Q 008496          328 DYLLTGSCDKTAIVWDVKTEE-WKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKW  406 (563)
Q Consensus       328 ~~l~s~s~D~~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~  406 (563)
                      +.+++...++.|++||..... .+..+....                                ....-.++-.....+++
T Consensus       103 ~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~--------------------------------~~g~~~~~~~~P~~ia~  150 (329)
T 3fvz_A          103 NYWVTDVALHQVFKLDPHSKEGPLLILGRSM--------------------------------QPGSDQNHFCQPTDVAV  150 (329)
T ss_dssp             CEEEEETTTTEEEEECTTCSSCCSEEESBTT--------------------------------BCCCSTTCCSSEEEEEE
T ss_pred             CEEEEECCCCEEEEEeCCCCeEEEEEecccC--------------------------------CCCCCccccCCCcEEEE
Confidence            988888888999999975432 222111000                                00000123446789999


Q ss_pred             CC-CCCEEEEEe-CCCcEEEEeCCCCceeeeeccc----------CCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEE
Q 008496          407 DP-TGSLLASCS-DDVTAKIWNMKQDKYVHDLREH----------SKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVK  474 (563)
Q Consensus       407 ~~-~~~~las~s-~dg~i~iwd~~~~~~~~~~~~~----------~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~  474 (563)
                      +| ++.++++.+ .++.|++|+ ..+..+..+...          -.....++++|++.        .++++...++.|+
T Consensus       151 ~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g--------~l~v~d~~~~~I~  221 (329)
T 3fvz_A          151 EPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLD--------QLCVADRENGRIQ  221 (329)
T ss_dssp             CTTTCCEEEEECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTT--------EEEEEETTTTEEE
T ss_pred             eCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCC--------EEEEEECCCCEEE
Confidence            99 889888887 699999999 455555555322          23378899988732        3677888899999


Q ss_pred             EEeCCCCeEEEEec--CCCCCEEEEEEcC------CCCEEEEEeCCCcEEEEecCCCeeEEEEec----CCCEEEEEEcC
Q 008496          475 LWDVELGKLLYSLN--GHREPVYSLAFSP------TGEYLASGSLDKSMHIWSLKEGKIVKTYTG----NGGIFEVCWNK  542 (563)
Q Consensus       475 iwd~~~~~~~~~~~--~h~~~i~~l~~sp------dg~~lasgs~dg~v~iw~~~~~~~~~~~~~----~~~i~~l~w~~  542 (563)
                      +||..+++.+..+.  .+...+.+++|+|      +|+.+++.+.+.+|++|+..+++++..+..    ...+.+++++|
T Consensus       222 ~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~  301 (329)
T 3fvz_A          222 CFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASE  301 (329)
T ss_dssp             EEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECT
T ss_pred             EEECCCCcEEEEEeccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECC
Confidence            99999899888873  4566789999999      333333333455899999999999988842    23588999999


Q ss_pred             CCCEEEEEECCCeEEEEEee
Q 008496          543 EGDKIAACFANHTVCVLDFR  562 (563)
Q Consensus       543 ~g~~la~~~~~~~v~v~~~~  562 (563)
                      +|+.+++...+++|.+|++.
T Consensus       302 dG~lyvad~~~~~I~~~~~~  321 (329)
T 3fvz_A          302 DGTVYIGDAHTNTVWKFTLT  321 (329)
T ss_dssp             TSEEEEEESSSCCEEEEEEE
T ss_pred             CCCEEEEECCCCEEEEEeCC
Confidence            99888888889999999874

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.79  E-value=9.3e-17  Score=160.50  Aligned_cols=240  Identities=11%  Similarity=0.094  Sum_probs=163.8

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCeEEEEEcC--CceeEeecc-CCCCEEEEEeCCCCCE--EEEee-------------CC
Q 008496          275 KDVTTLDWNGEGTLLATGSYDGQARIWSTN--GDLKCTLSK-HKGPIFSLKWNKKGDY--LLTGS-------------CD  336 (563)
Q Consensus       275 ~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~--~~~~~~~~~-h~~~V~~l~~~~~~~~--l~s~s-------------~D  336 (563)
                      ..+..++|+|+|++|++++.+ .|.+|+..  +.+...... ..+.+..++|+|+|++  +++++             .+
T Consensus        40 ~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~  118 (365)
T 1jof_A           40 EPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFA  118 (365)
T ss_dssp             CCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSC
T ss_pred             CCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCC
Confidence            357789999999999999988 99999974  544332221 0123456899999995  45553             68


Q ss_pred             CcEEEEECC-CCceeEEeee----cccCeEEEecCCCce-EEEE-eCCCeEEEEEcC-CCcc--eeeec--CCCcceeEE
Q 008496          337 KTAIVWDVK-TEEWKQQFEF----HSGPTLDVDWRNNVS-FATS-STDNMIYVCKIG-ENRP--IKTFA--GHQGEVNCV  404 (563)
Q Consensus       337 ~~v~iwd~~-~~~~~~~~~~----~~~~~~~~~~~~~~~-~~~~-~~d~~i~~~~~~-~~~~--~~~~~--~h~~~i~~~  404 (563)
                      +++.+|++. .++....+..    +...+..+.|.++.. ++++ ..++.|++|++. .++.  +..+.  .|...+..+
T Consensus       119 g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~  198 (365)
T 1jof_A          119 GYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWV  198 (365)
T ss_dssp             CEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEE
T ss_pred             ceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEe
Confidence            999999997 4655444332    344577788876653 4433 356899999997 4443  23333  245668899


Q ss_pred             EECCCCCEEEEEeC-CCcEEEEeCC--CCcee------eeec----ccCC------CEEEEE-EccCCCCCCCCCCcEEE
Q 008496          405 KWDPTGSLLASCSD-DVTAKIWNMK--QDKYV------HDLR----EHSK------EIYTIR-WSPTGSGTNNPNQQLIL  464 (563)
Q Consensus       405 ~~~~~~~~las~s~-dg~i~iwd~~--~~~~~------~~~~----~~~~------~i~~~~-~~p~~~~~~~~~~~~~l  464 (563)
                      +|+|+|++|++++. ++.|.+|++.  +++..      ..+.    +|..      .+..++ |+|+|.         +|
T Consensus       199 ~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~---------~l  269 (365)
T 1jof_A          199 AMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGK---------YM  269 (365)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSS---------EE
T ss_pred             EECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCC---------EE
Confidence            99999999887765 7899999765  45432      1121    1222      478899 999985         33


Q ss_pred             EEEeC-CC-----eEEEEeCC-CCeEEE---EecCCCCCEEEEEEcC---CCCEEEEEeCC-CcEEEEecCCCe
Q 008496          465 ASASF-DS-----TVKLWDVE-LGKLLY---SLNGHREPVYSLAFSP---TGEYLASGSLD-KSMHIWSLKEGK  524 (563)
Q Consensus       465 ~s~s~-dg-----~i~iwd~~-~~~~~~---~~~~h~~~i~~l~~sp---dg~~lasgs~d-g~v~iw~~~~~~  524 (563)
                      ++++. ++     +|++|++. +++...   ....+...+..++|+|   ||++|++++.+ +.|.||++....
T Consensus       270 ~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~~  343 (365)
T 1jof_A          270 FASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEF  343 (365)
T ss_dssp             EEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTE
T ss_pred             EEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchhh
Confidence            34332 23     89999986 566543   2333444567889999   89999998865 899999987663

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.78  E-value=1.9e-16  Score=155.84  Aligned_cols=248  Identities=12%  Similarity=0.181  Sum_probs=182.2

Q ss_pred             CceEEEEECCCCCEEEEeeCC------------------------CcEEEEecCCCCCcCCCCCCCceEEEEEeeecccc
Q 008496          216 SEVCACAWSPAGSLLASGSGD------------------------STARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTN  271 (563)
Q Consensus       216 ~~V~~~~~sp~~~~latgs~D------------------------~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (563)
                      +.|.+++++|+|+++++.+.+                        +.|.+||..++...             ... +  .
T Consensus        24 ~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~-------------~~~-~--~   87 (329)
T 3fvz_A           24 GQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEIL-------------QSS-G--K   87 (329)
T ss_dssp             SCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEE-------------EEE-C--T
T ss_pred             CCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEE-------------ecc-C--C
Confidence            568999999999999998887                        46888887654321             111 0  1


Q ss_pred             cCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCc--eeEee---------ccCCCCEEEEEeCC-CCCEEEEee-CCCc
Q 008496          272 EKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGD--LKCTL---------SKHKGPIFSLKWNK-KGDYLLTGS-CDKT  338 (563)
Q Consensus       272 ~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~--~~~~~---------~~h~~~V~~l~~~~-~~~~l~s~s-~D~~  338 (563)
                      ........++++++|+++++...++.|++|+.++.  ....+         ..+-....+++++| ++..+++.+ .++.
T Consensus        88 ~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~  167 (329)
T 3fvz_A           88 NLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSR  167 (329)
T ss_dssp             TTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCE
T ss_pred             CccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCe
Confidence            22346889999999999999999999999999886  44444         34455689999999 788778876 6899


Q ss_pred             EEEEECCCCceeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCC-CCEEEEEe
Q 008496          339 AIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT-GSLLASCS  417 (563)
Q Consensus       339 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~-~~~las~s  417 (563)
                      |++|| ..+.....+.....                 .+         .     ...++-.....++++|+ +.++++..
T Consensus       168 I~~~~-~~g~~~~~~~~~g~-----------------~~---------~-----~~~~~~~~p~gia~d~~~g~l~v~d~  215 (329)
T 3fvz_A          168 IVQFS-PSGKFVTQWGEESS-----------------GS---------S-----PRPGQFSVPHSLALVPHLDQLCVADR  215 (329)
T ss_dssp             EEEEC-TTSCEEEEECEECC-----------------SS---------S-----CCTTEESCEEEEEEETTTTEEEEEET
T ss_pred             EEEEc-CCCCEEEEeccCCC-----------------CC---------C-----CCCcccCCCcEEEEECCCCEEEEEEC
Confidence            99999 44544433321100                 00         0     00112234678999998 78888888


Q ss_pred             CCCcEEEEeCCCCceeeeec--ccCCCEEEEEEccCCCCCCCCCCcEEEEE-------EeCCCeEEEEeCCCCeEEEEec
Q 008496          418 DDVTAKIWNMKQDKYVHDLR--EHSKEIYTIRWSPTGSGTNNPNQQLILAS-------ASFDSTVKLWDVELGKLLYSLN  488 (563)
Q Consensus       418 ~dg~i~iwd~~~~~~~~~~~--~~~~~i~~~~~~p~~~~~~~~~~~~~l~s-------~s~dg~i~iwd~~~~~~~~~~~  488 (563)
                      .++.|++|+..+++.+..+.  .+...++.++|+| +.         ++++       .+.+..|++||..+++.+..+.
T Consensus       216 ~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~---------~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~  285 (329)
T 3fvz_A          216 ENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GF---------LFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFK  285 (329)
T ss_dssp             TTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TE---------EEEEECCCCTTCSCCCCEEEEETTTCCEEEEEC
T ss_pred             CCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CE---------EEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEc
Confidence            89999999999888877763  4566788999998 31         2222       2334589999999999988873


Q ss_pred             ---CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q 008496          489 ---GHREPVYSLAFSPTGEYLASGSLDKSMHIWSLK  521 (563)
Q Consensus       489 ---~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~  521 (563)
                         ++...+..|+++|+|.++++...+++|++|++.
T Consensus       286 ~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~  321 (329)
T 3fvz_A          286 PVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLT  321 (329)
T ss_dssp             CSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEE
T ss_pred             CCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCC
Confidence               566778999999999888888899999999975

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.78  E-value=8.2e-16  Score=147.90  Aligned_cols=247  Identities=13%  Similarity=0.219  Sum_probs=176.6

Q ss_pred             CCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEE-CCCCCEEEE
Q 008496          213 GHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDW-NGEGTLLAT  291 (563)
Q Consensus       213 ~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~-s~~g~~l~s  291 (563)
                      +|...+.+++++|++.++++.+.++.|++|+... ...          ..+. ..+....+...+..+++ .++|.++++
T Consensus        27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g-~~~----------~~~~-~~~~~~~~~~~p~~i~~~~~~g~l~v~   94 (286)
T 1q7f_A           27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEG-RFK----------FQFG-ECGKRDSQLLYPNRVAVVRNSGDIIVT   94 (286)
T ss_dssp             TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTS-CEE----------EEEC-CBSSSTTCBSSEEEEEEETTTTEEEEE
T ss_pred             CccCCCceEEECCCCCEEEEECCCCEEEEECCCC-cEE----------EEec-ccCCCcccccCceEEEEEcCCCeEEEE
Confidence            4556788999999999999988999999999652 210          0000 00111122346889999 578877777


Q ss_pred             EeC-CCeEEEEEcCCceeEeec-cCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecCCCc
Q 008496          292 GSY-DGQARIWSTNGDLKCTLS-KHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNV  369 (563)
Q Consensus       292 g~~-dg~i~vw~~~~~~~~~~~-~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  369 (563)
                      ... ++.|++|+.++.....+. .+...+.+++++|+|+.+++...++.|.+||.. +.....+.               
T Consensus        95 ~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~---------------  158 (286)
T 1q7f_A           95 ERSPTHQIQIYNQYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFG---------------  158 (286)
T ss_dssp             ECGGGCEEEEECTTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEE---------------
T ss_pred             cCCCCCEEEEECCCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeC---------------
Confidence            644 899999998887766553 344578999999999988887788999999864 32221110               


Q ss_pred             eEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeccc--CCCEEEEE
Q 008496          370 SFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREH--SKEIYTIR  447 (563)
Q Consensus       370 ~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~--~~~i~~~~  447 (563)
                                              ..++...+.+++++++|+++++.+.++.|++||.. +..+..+..+  ...+..++
T Consensus       159 ------------------------~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~  213 (286)
T 1q7f_A          159 ------------------------CSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVG  213 (286)
T ss_dssp             ------------------------CTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEE
T ss_pred             ------------------------CCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEE
Confidence                                    01233457889999999988888889999999974 4455555433  35688999


Q ss_pred             EccCCCCCCCCCCcEEEEEEeCCC-eEEEEeCCCCeEEEEecCCC--CCEEEEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 008496          448 WSPTGSGTNNPNQQLILASASFDS-TVKLWDVELGKLLYSLNGHR--EPVYSLAFSPTGEYLASGSLDKSMHIWSLKEG  523 (563)
Q Consensus       448 ~~p~~~~~~~~~~~~~l~s~s~dg-~i~iwd~~~~~~~~~~~~h~--~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~  523 (563)
                      ++|++.         ++++...++ .|++||. .++.+..+..+.  ..+.+++|+|+|+++++ +.|++|++|++...
T Consensus       214 ~d~~G~---------l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~  281 (286)
T 1q7f_A          214 INSNGE---------ILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQL  281 (286)
T ss_dssp             ECTTCC---------EEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred             ECCCCC---------EEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence            998874         566676675 9999996 466666665443  24789999999987777 67999999998653

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.76  E-value=4.7e-17  Score=164.16  Aligned_cols=276  Identities=10%  Similarity=-0.016  Sum_probs=174.4

Q ss_pred             eEEEEECCCCCEEEEeeCC---CcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEEeC
Q 008496          218 VCACAWSPAGSLLASGSGD---STARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSY  294 (563)
Q Consensus       218 V~~~~~sp~~~~latgs~D---~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~  294 (563)
                      +..++|||+|++||..+.+   ..+.+|++.++...              ....   ........+.|+|||++|+.++.
T Consensus        38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~--------------~l~~---~~~~~~~~~~~spdg~~l~~~~~  100 (396)
T 3c5m_A           38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAV--------------QLTE---GKGDNTFGGFISTDERAFFYVKN  100 (396)
T ss_dssp             TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEE--------------ECCC---SSCBCTTTCEECTTSSEEEEEET
T ss_pred             eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEE--------------Eeec---CCCCccccceECCCCCEEEEEEc
Confidence            6778999999988877543   36777887654311              1100   01111223689999999999999


Q ss_pred             CCeEEEEEcCCcee-EeeccCCCCEEE-------------------EEeCCCCCEEEEe-----eCCCcEEEEECCCCce
Q 008496          295 DGQARIWSTNGDLK-CTLSKHKGPIFS-------------------LKWNKKGDYLLTG-----SCDKTAIVWDVKTEEW  349 (563)
Q Consensus       295 dg~i~vw~~~~~~~-~~~~~h~~~V~~-------------------l~~~~~~~~l~s~-----s~D~~v~iwd~~~~~~  349 (563)
                      ++.|++|+..+... .....+......                   +.|+|++++++.+     ..+..|.+||+.+++.
T Consensus       101 ~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~  180 (396)
T 3c5m_A          101 ELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGEL  180 (396)
T ss_dssp             TTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCE
T ss_pred             CCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcE
Confidence            99999999875433 333333332222                   3567777766544     3567899999998876


Q ss_pred             eEEeeecccCeEEEecCC--CceEEEEeCC------CeEEEEEcCCCcceeeecCC-CcceeEEEECCCCCEEEEEeCC-
Q 008496          350 KQQFEFHSGPTLDVDWRN--NVSFATSSTD------NMIYVCKIGENRPIKTFAGH-QGEVNCVKWDPTGSLLASCSDD-  419 (563)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~d------~~i~~~~~~~~~~~~~~~~h-~~~i~~~~~~~~~~~las~s~d-  419 (563)
                      .... .+...+..+.|.+  ...++..+.+      ..|+++++............ ...+..++|+|+|+.|+.++.+ 
T Consensus       181 ~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~  259 (396)
T 3c5m_A          181 EVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFK  259 (396)
T ss_dssp             EEEE-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEET
T ss_pred             Eeec-cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCEEEEEecCC
Confidence            5544 3445566777866  3335444332      46888888655433333321 2357889999999987777554 


Q ss_pred             ----CcEEEEeCCCCceeeeecccCCCEEEEEEcc-CCCCCCCCCCcEEEEEEe----------------CCCeEEEEeC
Q 008496          420 ----VTAKIWNMKQDKYVHDLREHSKEIYTIRWSP-TGSGTNNPNQQLILASAS----------------FDSTVKLWDV  478 (563)
Q Consensus       420 ----g~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p-~~~~~~~~~~~~~l~s~s----------------~dg~i~iwd~  478 (563)
                          +.|.+||+.+++.... .... ... +.|+| ++.         ++++++                .++.|++||+
T Consensus       260 ~~~~~~l~~~d~~~g~~~~l-~~~~-~~~-~~~s~~dg~---------~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~  327 (396)
T 3c5m_A          260 GQTDRVIYKANPETLENEEV-MVMP-PCS-HLMSNFDGS---------LMVGDGCDAPVDVADADSYNIENDPFLYVLNT  327 (396)
T ss_dssp             TTCCEEEEEECTTTCCEEEE-EECC-SEE-EEEECSSSS---------EEEEEECCC----------CCCCCCEEEEEET
T ss_pred             CCccceEEEEECCCCCeEEe-eeCC-CCC-CCccCCCCc---------eEEEecCCcceeeccccccccCCCCcEEEEec
Confidence                4599999988764332 2111 123 88998 775         444443                3478999999


Q ss_pred             CCCeEEEEecCCCC-----------CEEEEEEcCCCCEEEEEeC-CCcEEEE--ecCCCe
Q 008496          479 ELGKLLYSLNGHRE-----------PVYSLAFSPTGEYLASGSL-DKSMHIW--SLKEGK  524 (563)
Q Consensus       479 ~~~~~~~~~~~h~~-----------~i~~l~~spdg~~lasgs~-dg~v~iw--~~~~~~  524 (563)
                      .+++.. .+..+..           .+..++|+|||++|+.++. ++...||  ++.++.
T Consensus       328 ~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~~~  386 (396)
T 3c5m_A          328 KAKSAQ-KLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVPESY  386 (396)
T ss_dssp             TTTBCC-EEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCTTC
T ss_pred             ccCceE-EccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEEcccc
Confidence            877643 3443433           2567899999999887765 4544444  444443

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.76  E-value=5.3e-16  Score=152.73  Aligned_cols=267  Identities=11%  Similarity=0.103  Sum_probs=191.1

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCeEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEee
Q 008496          275 KDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFE  354 (563)
Q Consensus       275 ~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~  354 (563)
                      ..|.+++|++++..++..+.++.++.|  .+.....+..+...+.+++|+++|+.++++..++.|.+||+.+++......
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~   83 (333)
T 2dg1_A            6 QDLPTLFYSGKSNSAVPIISESELQTI--TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFV   83 (333)
T ss_dssp             CCCCBCCSCGGGGCSSCCCCGGGSCEE--ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEE
T ss_pred             cccceeeecCCccceeEEeecccCccc--ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEee
Confidence            447778889988877777888899999  344555666777778999999999977888889999999998887665443


Q ss_pred             ecccCeEEEecCCCce-EEEEeCC----CeEEEEEcCCCcceeeec--CCCcceeEEEECCCCCEEEEEeC------CCc
Q 008496          355 FHSGPTLDVDWRNNVS-FATSSTD----NMIYVCKIGENRPIKTFA--GHQGEVNCVKWDPTGSLLASCSD------DVT  421 (563)
Q Consensus       355 ~~~~~~~~~~~~~~~~-~~~~~~d----~~i~~~~~~~~~~~~~~~--~h~~~i~~~~~~~~~~~las~s~------dg~  421 (563)
                      .+...+..+.+..+.. +++...+    +.|++|+.........+.  .+...+++++++|+|+++++...      .+.
T Consensus        84 ~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~  163 (333)
T 2dg1_A           84 SHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGG  163 (333)
T ss_dssp             CSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEE
T ss_pred             CCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCce
Confidence            4455677888865544 4544444    589999887665432332  23456899999999998887664      355


Q ss_pred             EEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC-CeEEE--------EecCCCC
Q 008496          422 AKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL-GKLLY--------SLNGHRE  492 (563)
Q Consensus       422 i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~-~~~~~--------~~~~h~~  492 (563)
                      |..|+..+++.. .+..+...+..++|+|++.        .++++.+.++.|.+||+.. +..+.        .+.++ .
T Consensus       164 l~~~~~~~~~~~-~~~~~~~~~~~i~~~~dg~--------~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~  233 (333)
T 2dg1_A          164 VYYVSPDFRTVT-PIIQNISVANGIALSTDEK--------VLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-E  233 (333)
T ss_dssp             EEEECTTSCCEE-EEEEEESSEEEEEECTTSS--------EEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-S
T ss_pred             EEEEeCCCCEEE-EeecCCCcccceEECCCCC--------EEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-C
Confidence            666665554433 2223334578899999874        2445566788999999863 33221        12222 3


Q ss_pred             CEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEecCC-------CEEEEEEcCCCCEEEEEECCC
Q 008496          493 PVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNG-------GIFEVCWNKEGDKIAACFANH  554 (563)
Q Consensus       493 ~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~~~-------~i~~l~w~~~g~~la~~~~~~  554 (563)
                      .+..++++++|+++++...++.|.+|+. +++.+..+....       .+.+++|++||+.|.++..++
T Consensus       234 ~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g  301 (333)
T 2dg1_A          234 GPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDI  301 (333)
T ss_dssp             EEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECG
T ss_pred             CCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCcc
Confidence            5788999999998888888899999998 577777775432       478999999998888776653

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.76  E-value=5.9e-16  Score=153.26  Aligned_cols=256  Identities=11%  Similarity=0.124  Sum_probs=176.9

Q ss_pred             CCeEEEEECCCCCEEEEEe---------CCCeEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEEEeeCC---C--cEE
Q 008496          275 KDVTTLDWNGEGTLLATGS---------YDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCD---K--TAI  340 (563)
Q Consensus       275 ~~V~~l~~s~~g~~l~sg~---------~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D---~--~v~  340 (563)
                      ..+..+++  ||+.++...         .++.|.+|+..+.....+    ..+..++|+|+|++|+.++.+   +  .|.
T Consensus        15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~   88 (347)
T 2gop_A           15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRFI----ENATMPRISPDGKKIAFMRANEEKKVSEIW   88 (347)
T ss_dssp             CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEEE----ESCEEEEECTTSSEEEEEEEETTTTEEEEE
T ss_pred             EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEEc----ccCCCeEECCCCCEEEEEEeccCCCcceEE
Confidence            34667777  888887642         356889999876554444    567889999999999887754   3  378


Q ss_pred             EEECCCCceeEEeeecccCeEEEecCCC-ceEEEEeC---------------------------CCeEEEEEcCCCccee
Q 008496          341 VWDVKTEEWKQQFEFHSGPTLDVDWRNN-VSFATSST---------------------------DNMIYVCKIGENRPIK  392 (563)
Q Consensus       341 iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---------------------------d~~i~~~~~~~~~~~~  392 (563)
                      +||+.+++.........  +..+.|.++ ..++.++.                           ...|++|++..+..+.
T Consensus        89 ~~~~~~g~~~~l~~~~~--~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~  166 (347)
T 2gop_A           89 VADLETLSSKKILEAKN--IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIE  166 (347)
T ss_dssp             EEETTTTEEEEEEEESE--EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEE
T ss_pred             EEECCCCceEEEEcCCC--ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEe
Confidence            88988887665544433  778889754 44555542                           2568899988776634


Q ss_pred             eecCCCcceeEEEECCCCCEEEEEeCCC-------cEEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEE
Q 008496          393 TFAGHQGEVNCVKWDPTGSLLASCSDDV-------TAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILA  465 (563)
Q Consensus       393 ~~~~h~~~i~~~~~~~~~~~las~s~dg-------~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~  465 (563)
                      .+.. . .+..++|+|+| ++++++.+.       ...||.+.++. ...+..+ ..+..+  +|+|.         .|+
T Consensus       167 ~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~-~~~l~~~-~~~~~~--spdg~---------~l~  230 (347)
T 2gop_A          167 EFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGK-EEKMFEK-VSFYAV--DSDGE---------RIL  230 (347)
T ss_dssp             EEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTE-EEEEEEE-ESEEEE--EECSS---------CEE
T ss_pred             eecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCc-eEEeccC-cceeeE--CCCCC---------EEE
Confidence            4544 3 78899999999 888776642       44555544443 3344444 455544  78875         344


Q ss_pred             EEeCC--------CeEEEEeCCCCeEEEEecCCCCCEEE-EEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEecCCCEE
Q 008496          466 SASFD--------STVKLWDVELGKLLYSLNGHREPVYS-LAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIF  536 (563)
Q Consensus       466 s~s~d--------g~i~iwd~~~~~~~~~~~~h~~~i~~-l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~~~~i~  536 (563)
                      .++.+        ..|.+||  +++......+|...+.. +.|+ || ++++++.++.++|| +.+++......+.+.|.
T Consensus       231 ~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~~~~~~~~~v~  305 (347)
T 2gop_A          231 LYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIKPIAKGRHWIM  305 (347)
T ss_dssp             EEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEEEEECSSSEEE
T ss_pred             EEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceEEEecCCCeEE
Confidence            44433        4788888  56654444556777886 9999 99 99999999999999 88777766666667789


Q ss_pred             EEEEcCCCCEEEEEECCCeE-EEEEe
Q 008496          537 EVCWNKEGDKIAACFANHTV-CVLDF  561 (563)
Q Consensus       537 ~l~w~~~g~~la~~~~~~~v-~v~~~  561 (563)
                      +++|+|  ..++++..++.. .||.+
T Consensus       306 ~~~~s~--~~~~~~~~~~~~~~l~~~  329 (347)
T 2gop_A          306 GFDVDE--IVVYLKETATRLRELFTW  329 (347)
T ss_dssp             EEEESS--SEEEEEECSSSCCEEEEE
T ss_pred             eeeeeC--cEEEEEcCCCChHHheEe
Confidence            999999  566666666554 56654

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.75  E-value=1.2e-15  Score=150.98  Aligned_cols=258  Identities=14%  Similarity=0.142  Sum_probs=173.7

Q ss_pred             ceEEEEECCCCCEEEEee---------CCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCC
Q 008496          217 EVCACAWSPAGSLLASGS---------GDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT  287 (563)
Q Consensus       217 ~V~~~~~sp~~~~latgs---------~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~  287 (563)
                      .+...+|  +|+.+|...         .++.|.+|++.++..           ..+           ..+..++|||||+
T Consensus        16 ~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~-----------~~l-----------~~~~~~~~SpDg~   71 (347)
T 2gop_A           16 YLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNAR-----------RFI-----------ENATMPRISPDGK   71 (347)
T ss_dssp             EEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCE-----------EEE-----------ESCEEEEECTTSS
T ss_pred             EcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCce-----------EEc-----------ccCCCeEECCCCC
Confidence            3566777  888777642         366788898865431           111           2478899999999


Q ss_pred             EEEEEeCC---C--eEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEEEeeCC--------------------------
Q 008496          288 LLATGSYD---G--QARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCD--------------------------  336 (563)
Q Consensus       288 ~l~sg~~d---g--~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D--------------------------  336 (563)
                      +|+.++.+   +  .|.+|+..+.....+..+.. +..+.|+|+|+.|+.++.+                          
T Consensus        72 ~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  150 (347)
T 2gop_A           72 KIAFMRANEEKKVSEIWVADLETLSSKKILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGE  150 (347)
T ss_dssp             EEEEEEEETTTTEEEEEEEETTTTEEEEEEEESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------C
T ss_pred             EEEEEEeccCCCcceEEEEECCCCceEEEEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCc
Confidence            99988754   3  47777877654444444444 9999999999999887643                          


Q ss_pred             -CcEEEEECCCCceeEEeeecccCeEEEecCCCceEEEEeCC---------CeEEEEEcCCCcceeeecCCCcceeEEEE
Q 008496          337 -KTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTD---------NMIYVCKIGENRPIKTFAGHQGEVNCVKW  406 (563)
Q Consensus       337 -~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d---------~~i~~~~~~~~~~~~~~~~h~~~i~~~~~  406 (563)
                       ..|.+||+.+++....+.. . .+..+.|.++..++++..+         ..|++++  .+. ...+..+ ..+..+  
T Consensus       151 ~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg~~~~~~~~~~~~~~~~~~~l~~~d--~~~-~~~l~~~-~~~~~~--  222 (347)
T 2gop_A          151 KTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDKIVVNVPHREIIPQYFKFWDIYIWE--DGK-EEKMFEK-VSFYAV--  222 (347)
T ss_dssp             EEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTEEEEEEECCCSSCCSSCCEEEEEEE--TTE-EEEEEEE-ESEEEE--
T ss_pred             cceEEEEECCCCeEEeeecC-C-CcccccCCCCeEEEEEecccccccccccccEEEeC--CCc-eEEeccC-cceeeE--
Confidence             5689999998876444444 3 6667788776633334332         2455555  333 3344444 445444  


Q ss_pred             CCCCCEEEEEeCCC--------cEEEEeCCCCceeeeecccCCCEEE-EEEccCCCCCCCCCCcEEEEEEeCCCeEEEEe
Q 008496          407 DPTGSLLASCSDDV--------TAKIWNMKQDKYVHDLREHSKEIYT-IRWSPTGSGTNNPNQQLILASASFDSTVKLWD  477 (563)
Q Consensus       407 ~~~~~~las~s~dg--------~i~iwd~~~~~~~~~~~~~~~~i~~-~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd  477 (563)
                      +|+|+.|+.++.++        .|.+||  +++.......+...+.. +.|+ ++          ++++++.++.++|| 
T Consensus       223 spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg----------~~~~~~~~~~~~l~-  288 (347)
T 2gop_A          223 DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK----------VYFTLFEEGSVNLY-  288 (347)
T ss_dssp             EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE----------EEEEEEETTEEEEE-
T ss_pred             CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-Cc----------EEEEEecCCcEEEE-
Confidence            99999988877543        677777  55544444455677776 8887 53          57888899999999 


Q ss_pred             CCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcE-EEEecCCCee
Q 008496          478 VELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSM-HIWSLKEGKI  525 (563)
Q Consensus       478 ~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v-~iw~~~~~~~  525 (563)
                      +.+++.. .+..+...|.+++|+|  .++++++.++.. .||.+. ++.
T Consensus       289 ~~~g~~~-~~~~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~-g~~  333 (347)
T 2gop_A          289 IWDGEIK-PIAKGRHWIMGFDVDE--IVVYLKETATRLRELFTWD-GEE  333 (347)
T ss_dssp             EESSSEE-EEECSSSEEEEEEESS--SEEEEEECSSSCCEEEEES-SSE
T ss_pred             EcCCceE-EEecCCCeEEeeeeeC--cEEEEEcCCCChHHheEeC-CcE
Confidence            8766654 3444577899999999  677777777654 777765 553

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.74  E-value=1.3e-16  Score=174.74  Aligned_cols=317  Identities=10%  Similarity=0.108  Sum_probs=191.3

Q ss_pred             eEecCCCCc-----eEEEEECCCCCEEEEeeCC---------CcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCC
Q 008496          209 TILEGHTSE-----VCACAWSPAGSLLASGSGD---------STARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKS  274 (563)
Q Consensus       209 ~~l~~h~~~-----V~~~~~sp~~~~latgs~D---------~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (563)
                      .++.+|...     ....+|||||++|+.++.+         +.+.+||+.++....                  ...+.
T Consensus        50 ~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~------------------l~~~~  111 (740)
T 4a5s_A           50 VFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLIT------------------EERIP  111 (740)
T ss_dssp             EEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECC------------------SSCCC
T ss_pred             EEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEE------------------cccCC
Confidence            445666532     2347899999999998876         556799998764211                  11123


Q ss_pred             CCeEEEEECCCCCEEEEEeCCCeEEEEEcCCceeEee--ccCCCCE-----------------EEEEeCCCCCEEEEeeC
Q 008496          275 KDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTL--SKHKGPI-----------------FSLKWNKKGDYLLTGSC  335 (563)
Q Consensus       275 ~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~~~~~--~~h~~~V-----------------~~l~~~~~~~~l~s~s~  335 (563)
                      ..+...+|||||+.||.+. ++.|++|+..+.....+  .++...+                 .++.|||||++|+.++.
T Consensus       112 ~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~  190 (740)
T 4a5s_A          112 NNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQF  190 (740)
T ss_dssp             TTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEE
T ss_pred             CcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEE
Confidence            5689999999999999884 68999999865433332  3333333                 24899999999999887


Q ss_pred             CCc-EEEEECCCCceeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCC---Cc--ceeeec------CCCcceeE
Q 008496          336 DKT-AIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGE---NR--PIKTFA------GHQGEVNC  403 (563)
Q Consensus       336 D~~-v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~---~~--~~~~~~------~h~~~i~~  403 (563)
                      |.+ +.+|++.......   .+......+.+.....   ......|++|++.+   +.  ....+.      +|...+..
T Consensus       191 d~~~v~~~~~~~~~~~~---~~~~~~~~~~yp~~G~---~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  264 (740)
T 4a5s_A          191 NDTEVPLIEYSFYSDES---LQYPKTVRVPYPKAGA---VNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCD  264 (740)
T ss_dssp             ECTTCCEEEEEECCSTT---CSSCEEEEEECCBTTS---CCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEE
T ss_pred             cccCCceEEEEeecCCC---CCCCcceeecCCCCcC---cCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEE
Confidence            665 8888753111000   0011112222211100   01122688999987   62  222333      47888999


Q ss_pred             EEECCCCCEEEEEeC----CCcEEEEeCCCCc----ee--eee--cccCCCEE-----EEEEccCCCCCCCCCCcEEEEE
Q 008496          404 VKWDPTGSLLASCSD----DVTAKIWNMKQDK----YV--HDL--REHSKEIY-----TIRWSPTGSGTNNPNQQLILAS  466 (563)
Q Consensus       404 ~~~~~~~~~las~s~----dg~i~iwd~~~~~----~~--~~~--~~~~~~i~-----~~~~~p~~~~~~~~~~~~~l~s  466 (563)
                      ++|+|||++++....    +..|++||+.+++    +.  ..+  ..|...+.     ...|+|+|.        .++..
T Consensus       265 ~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~--------~l~~~  336 (740)
T 4a5s_A          265 VTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGN--------SFYKI  336 (740)
T ss_dssp             EEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSS--------EEEEE
T ss_pred             EEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCC--------EEEEE
Confidence            999999997665533    3479999998876    22  222  23444433     678999885        23324


Q ss_pred             Ee-CCC--eEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEE-EEeC----CCcEEEEec--CCCeeEEEEec-----
Q 008496          467 AS-FDS--TVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLA-SGSL----DKSMHIWSL--KEGKIVKTYTG-----  531 (563)
Q Consensus       467 ~s-~dg--~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~la-sgs~----dg~v~iw~~--~~~~~~~~~~~-----  531 (563)
                      .+ .+|  .|++||+..++.. .+......|..+.+ +|++.|+ +++.    .+..+||.+  ..+.....+..     
T Consensus       337 ~s~~~G~~~l~~~~~~~~~~~-~lT~g~~~v~~~~~-~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~  414 (740)
T 4a5s_A          337 ISNEEGYRHICYFQIDKKDCT-FITKGTWEVIGIEA-LTSDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPE  414 (740)
T ss_dssp             EECTTSCEEEEEEETTCSSCE-ESCCSSSCEEEEEE-ECSSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTT
T ss_pred             EEcCCCceEEEEEECCCCceE-ecccCCEEEEEEEE-EeCCEEEEEEecCCCCCceeEEEEEECCCCCcceeeccccCCC
Confidence            44 444  6888898866554 44444555666542 4465554 4444    234555554  43333223331     


Q ss_pred             CCCEEEEEEcCCCCEEEEEECCC---eEEEEE
Q 008496          532 NGGIFEVCWNKEGDKIAACFANH---TVCVLD  560 (563)
Q Consensus       532 ~~~i~~l~w~~~g~~la~~~~~~---~v~v~~  560 (563)
                      ......++|+|+|++++..+.+.   .+.+++
T Consensus       415 ~~~~~~~~~S~dg~~~~~~~s~~~~p~~~l~~  446 (740)
T 4a5s_A          415 RCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHS  446 (740)
T ss_dssp             TBCBEEEEECTTSSEEEEEECSBSSCEEEEEE
T ss_pred             CCceEEEEECCCCCEEEEEeCCCCCCEEEEEE
Confidence            24678999999999888776552   344544

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.73  E-value=2.1e-15  Score=145.85  Aligned_cols=233  Identities=13%  Similarity=0.116  Sum_probs=169.5

Q ss_pred             CCeEEEEECCCCC-EEEEEeCCCeEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEe
Q 008496          275 KDVTTLDWNGEGT-LLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQF  353 (563)
Q Consensus       275 ~~V~~l~~s~~g~-~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~  353 (563)
                      ....+++|+|+|+ +++++..++.|..|+..+. ...+..+...+.+++++|+|+.+++...++.|.+||..+++.....
T Consensus        28 ~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~  106 (296)
T 3e5z_A           28 TWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIA  106 (296)
T ss_dssp             SSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEE
T ss_pred             ccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEe
Confidence            3467899999998 7888889999999999887 6667777888999999999998887777889999998777643211


Q ss_pred             eecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeC---------------
Q 008496          354 EFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD---------------  418 (563)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~---------------  418 (563)
                      ....                              .       .....++.++++|+|+++++.+.               
T Consensus       107 ~~~~------------------------------~-------~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~  149 (296)
T 3e5z_A          107 DSFE------------------------------G-------KKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEME  149 (296)
T ss_dssp             CEET------------------------------T-------EECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCC
T ss_pred             eccC------------------------------C-------CCCCCCCCEEECCCCCEEEECCcccccccccccccccc
Confidence            1000                              0       01124567899999998887331               


Q ss_pred             --CCcEEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCC-CCeE---EEEecCCCC
Q 008496          419 --DVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVE-LGKL---LYSLNGHRE  492 (563)
Q Consensus       419 --dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~-~~~~---~~~~~~h~~  492 (563)
                        .+.|..++.. + .+..+..+......++|+|++.         +|++.+.++.|++|++. .++.   ...+..+..
T Consensus       150 ~~~~~l~~~~~~-g-~~~~~~~~~~~~~gi~~s~dg~---------~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~  218 (296)
T 3e5z_A          150 LPGRWVFRLAPD-G-TLSAPIRDRVKPNGLAFLPSGN---------LLVSDTGDNATHRYCLNARGETEYQGVHFTVEPG  218 (296)
T ss_dssp             SSSCEEEEECTT-S-CEEEEECCCSSEEEEEECTTSC---------EEEEETTTTEEEEEEECSSSCEEEEEEEECCSSS
T ss_pred             CCCcEEEEECCC-C-CEEEeecCCCCCccEEECCCCC---------EEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCC
Confidence              2344444444 3 3334445566678999999875         44778888999999986 5554   233333445


Q ss_pred             CEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEecCCCEEEEEE-cCCCCEEEEEECCCeEEEEE
Q 008496          493 PVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCW-NKEGDKIAACFANHTVCVLD  560 (563)
Q Consensus       493 ~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~~~~i~~l~w-~~~g~~la~~~~~~~v~v~~  560 (563)
                      .+..++++++|+++++.  ++.|.+|+.. ++.+..+.....+.+++| +++|+.|.++..++ +.-++
T Consensus       219 ~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~~~~~~~~~~~~~f~~~d~~~L~v~t~~~-l~~~~  283 (296)
T 3e5z_A          219 KTDGLRVDAGGLIWASA--GDGVHVLTPD-GDELGRVLTPQTTSNLCFGGPEGRTLYMTVSTE-FWSIE  283 (296)
T ss_dssp             CCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEEEEEECSSCCCEEEEESTTSCEEEEEETTE-EEEEE
T ss_pred             CCCeEEECCCCCEEEEc--CCeEEEECCC-CCEEEEEECCCCceeEEEECCCCCEEEEEcCCe-EEEEE
Confidence            56789999999977766  7889999986 777777776555889999 68999999987763 44444

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.73  E-value=2.9e-14  Score=149.34  Aligned_cols=309  Identities=13%  Similarity=0.090  Sum_probs=209.0

Q ss_pred             CCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEc-
Q 008496          225 PAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWST-  303 (563)
Q Consensus       225 p~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~-  303 (563)
                      |.+.++++...+++|.++|..+++..             ..+.     ....+..+.++|||+++++++.|+.|.+||+ 
T Consensus       165 ~~~~~~V~~~~~~~V~viD~~t~~v~-------------~~i~-----~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~  226 (567)
T 1qks_A          165 LENLFSVTLRDAGQIALIDGSTYEIK-------------TVLD-----TGYAVHISRLSASGRYLFVIGRDGKVNMIDLW  226 (567)
T ss_dssp             GGGEEEEEETTTTEEEEEETTTCCEE-------------EEEE-----CSSCEEEEEECTTSCEEEEEETTSEEEEEETT
T ss_pred             CCceEEEEeCCCCeEEEEECCCCeEE-------------EEEe-----CCCCccceEECCCCCEEEEEcCCCeEEEEECC
Confidence            44557777888999999998765421             1111     1234678999999999999999999999998 


Q ss_pred             --CCceeEeeccCCCCEEEEEeC----CCCCEEEEeeC-CCcEEEEECCCCceeEEeeecc----------c-CeEEEec
Q 008496          304 --NGDLKCTLSKHKGPIFSLKWN----KKGDYLLTGSC-DKTAIVWDVKTEEWKQQFEFHS----------G-PTLDVDW  365 (563)
Q Consensus       304 --~~~~~~~~~~h~~~V~~l~~~----~~~~~l~s~s~-D~~v~iwd~~~~~~~~~~~~~~----------~-~~~~~~~  365 (563)
                        .+.....+..... ...++|+    |+|+++++++. +++|.++|..+.+.+..+....          . .+..+..
T Consensus       227 ~~t~~~v~~i~~G~~-P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~  305 (567)
T 1qks_A          227 MKEPTTVAEIKIGSE-ARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILA  305 (567)
T ss_dssp             SSSCCEEEEEECCSE-EEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEE
T ss_pred             CCCCcEeEEEecCCC-CceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEE
Confidence              4455555554333 4789999    69999877654 5899999999988887665321          1 1222222


Q ss_pred             C--CCceEEEEeCCCeEEEEEcCCCcce--eeecCCCcceeEEEECCCCCEEEEEe-CCCcEEEEeCCCCceeeeecc--
Q 008496          366 R--NNVSFATSSTDNMIYVCKIGENRPI--KTFAGHQGEVNCVKWDPTGSLLASCS-DDVTAKIWNMKQDKYVHDLRE--  438 (563)
Q Consensus       366 ~--~~~~~~~~~~d~~i~~~~~~~~~~~--~~~~~h~~~i~~~~~~~~~~~las~s-~dg~i~iwd~~~~~~~~~~~~--  438 (563)
                      .  ....++.....|.|.+.+.......  ..+ ........+.|+|+|++|+++. .++.|.++|+.+++.+..+..  
T Consensus       306 s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i-~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg  384 (567)
T 1qks_A          306 SHYRPEFIVNVKETGKILLVDYTDLNNLKTTEI-SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGG  384 (567)
T ss_dssp             CSSSSEEEEEETTTTEEEEEETTCSSEEEEEEE-ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSS
T ss_pred             cCCCCEEEEEecCCCeEEEEecCCCccceeeee-eccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccC
Confidence            1  2233445566788888887654321  222 1233466789999999876655 578999999999987655433  


Q ss_pred             ---cCCCEEEEEEccCCCCCCCCCCcEEEEEEe-CCCeEEEEeCCC-------CeEEEEecCCCCCEEEEEEcCCCCEEE
Q 008496          439 ---HSKEIYTIRWSPTGSGTNNPNQQLILASAS-FDSTVKLWDVEL-------GKLLYSLNGHREPVYSLAFSPTGEYLA  507 (563)
Q Consensus       439 ---~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s-~dg~i~iwd~~~-------~~~~~~~~~h~~~i~~l~~spdg~~la  507 (563)
                         |.+.-..+ +.|++.        .+.+++. .+++|.++|...       .+.+.++......-.-|.++|++++|.
T Consensus       385 ~~Phpg~g~~~-~~p~~g--------~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~  455 (567)
T 1qks_A          385 QTPHPGRGANF-VHPTFG--------PVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLY  455 (567)
T ss_dssp             SSBCCTTCEEE-EETTTE--------EEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEE
T ss_pred             cCCCCccceee-ECCCCC--------cEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEE
Confidence               32211111 345432        2455554 568999999987       567777765433334578999999988


Q ss_pred             EEeC-------CCcEEEEecCCC-----e-eEEEEe---------cCCCEEEEEEcCCCCEEEEEEC-----CCeEEEEE
Q 008496          508 SGSL-------DKSMHIWSLKEG-----K-IVKTYT---------GNGGIFEVCWNKEGDKIAACFA-----NHTVCVLD  560 (563)
Q Consensus       508 sgs~-------dg~v~iw~~~~~-----~-~~~~~~---------~~~~i~~l~w~~~g~~la~~~~-----~~~v~v~~  560 (563)
                      +...       .++|.|+|+.+.     . ......         +...+..+.|+|+|+.|.++..     ++.|.|+|
T Consensus       456 v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D  535 (567)
T 1qks_A          456 VDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVD  535 (567)
T ss_dssp             EECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEE
T ss_pred             EecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEE
Confidence            7653       358999999876     2 123332         2346889999999998887743     57899998


Q ss_pred             ee
Q 008496          561 FR  562 (563)
Q Consensus       561 ~~  562 (563)
                      .+
T Consensus       536 ~~  537 (567)
T 1qks_A          536 DK  537 (567)
T ss_dssp             TT
T ss_pred             CC
Confidence            54

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.70  E-value=1e-12  Score=126.66  Aligned_cols=277  Identities=8%  Similarity=0.032  Sum_probs=195.2

Q ss_pred             CCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEE
Q 008496          213 GHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATG  292 (563)
Q Consensus       213 ~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg  292 (563)
                      .+...+.+++++|+|+++++...++.+.+|+.. +..              .....  ......+..++++++|.++++.
T Consensus        12 ~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~--------------~~~~~--~~~~~~~~~i~~~~~g~l~v~~   74 (299)
T 2z2n_A           12 NQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKI--------------TEYPL--PTPDAKVMCLTISSDGEVWFTE   74 (299)
T ss_dssp             SSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCE--------------EEEEC--SSTTCCEEEEEECTTSCEEEEE
T ss_pred             CcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCe--------------EEecC--CcccCceeeEEECCCCCEEEeC
Confidence            445678999999999988877778899999865 321              00100  0123568999999999988887


Q ss_pred             eCCCeEEEEEcCCceeEe-eccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecCCCceE
Q 008496          293 SYDGQARIWSTNGDLKCT-LSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSF  371 (563)
Q Consensus       293 ~~dg~i~vw~~~~~~~~~-~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  371 (563)
                      ..++.|..|+.++..... +......+.++.+.++|..+++...++.|.+||. ++.... +                  
T Consensus        75 ~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~-~------------------  134 (299)
T 2z2n_A           75 NAANKIGRITKKGIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIRE-Y------------------  134 (299)
T ss_dssp             TTTTEEEEECTTSCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEE-E------------------
T ss_pred             CCCCeEEEECCCCcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEE-e------------------
Confidence            778999999987654322 2234557899999999988887777888999987 443211 0                  


Q ss_pred             EEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeee-ecccCCCEEEEEEcc
Q 008496          372 ATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHD-LREHSKEIYTIRWSP  450 (563)
Q Consensus       372 ~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~-~~~~~~~i~~~~~~p  450 (563)
                                  .         ...+...+.+++++++|+++++...++.|..||. +++.... +......+..+++.+
T Consensus       135 ------------~---------~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~  192 (299)
T 2z2n_A          135 ------------E---------LPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGN  192 (299)
T ss_dssp             ------------E---------CSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECT
T ss_pred             ------------c---------CCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECC
Confidence                        0         0112335778999999998888777889999998 5554322 233445678899988


Q ss_pred             CCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEE-EecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEE
Q 008496          451 TGSGTNNPNQQLILASASFDSTVKLWDVELGKLLY-SLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTY  529 (563)
Q Consensus       451 ~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~-~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~  529 (563)
                      ++.         +.++...++.|.+||. +++... .+..+...+.+++++++|+++++...++.|.+|+. ++++ ..+
T Consensus       193 ~g~---------l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~-~~~  260 (299)
T 2z2n_A          193 DDA---------LWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNII-EEY  260 (299)
T ss_dssp             TSS---------EEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTEE-EEE
T ss_pred             CCC---------EEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECC-CCce-EEE
Confidence            764         4555556789999999 666433 23334567899999999997777667889999998 5654 344


Q ss_pred             ec---CCCEEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496          530 TG---NGGIFEVCWNKEGDKIAACFANHTVCVLDFR  562 (563)
Q Consensus       530 ~~---~~~i~~l~w~~~g~~la~~~~~~~v~v~~~~  562 (563)
                      ..   ...+.++++ ++|+..++.. ++.+..++.+
T Consensus       261 ~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~  294 (299)
T 2z2n_A          261 PIQIKSAEPHGICF-DGETIWFAME-CDKIGKLTLI  294 (299)
T ss_dssp             ECSSSSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC
T ss_pred             eCCCCCCccceEEe-cCCCEEEEec-CCcEEEEEcC
Confidence            22   246889999 8888766654 5678777754

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.70  E-value=9.2e-15  Score=159.32  Aligned_cols=252  Identities=11%  Similarity=0.124  Sum_probs=165.3

Q ss_pred             CeEEEEECCCCCEEEEEeCCC-----eEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCcee
Q 008496          276 DVTTLDWNGEGTLLATGSYDG-----QARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWK  350 (563)
Q Consensus       276 ~V~~l~~s~~g~~l~sg~~dg-----~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~  350 (563)
                      .+..++|||||++|+.+..++     .|++|++.+............+.+++|+|+|+.|+.++.++.       .... 
T Consensus       126 ~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~-------~~~~-  197 (710)
T 2xdw_A          126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQ-------DGKS-  197 (710)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCC-------SSCC-
T ss_pred             EEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCcccceEEEEeCCCEEEEEEECCc-------cccc-
Confidence            588899999999999876543     899999876543322222223667999999999998887754       0000 


Q ss_pred             EEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcc--eeeec--CCCcceeEEEECCCCCEEEEEeC-----CCc
Q 008496          351 QQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRP--IKTFA--GHQGEVNCVKWDPTGSLLASCSD-----DVT  421 (563)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~--~~~~~--~h~~~i~~~~~~~~~~~las~s~-----dg~  421 (563)
                         .   +...           .......|++|++++...  ...+.  .|...+..+.|+|||++|+.++.     +..
T Consensus       198 ---~---~~~~-----------~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~  260 (710)
T 2xdw_A          198 ---D---GTET-----------STNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNR  260 (710)
T ss_dssp             ---S---SSCC-----------CCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCE
T ss_pred             ---c---cccc-----------ccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccE
Confidence               0   0000           001123455566554432  12222  24555778999999999887765     568


Q ss_pred             EEEEeCCC------Cc-eeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeC---CCeEEEEeCCCCe--EEEEecC
Q 008496          422 AKIWNMKQ------DK-YVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASF---DSTVKLWDVELGK--LLYSLNG  489 (563)
Q Consensus       422 i~iwd~~~------~~-~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~---dg~i~iwd~~~~~--~~~~~~~  489 (563)
                      |.+||+.+      +. ....+..+...+.. .|+|+|.        .+++.+..   ++.|.+||+.++.  ....+..
T Consensus       261 l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~--------~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~  331 (710)
T 2xdw_A          261 LWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGT--------VFTFKTNRHSPNYRLINIDFTDPEESKWKVLVP  331 (710)
T ss_dssp             EEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETT--------EEEEEECTTCTTCEEEEEETTSCCGGGCEEEEC
T ss_pred             EEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCC--------EEEEEECCCCCCCEEEEEeCCCCCcccceeccC
Confidence            99999876      42 34455556555554 4777764        23333333   3479999998764  1234444


Q ss_pred             CCC--CEEEEEEcCCCCEEEEEeCCCc--EEEEecCCCeeEEEEec-CCCEEEEEEcCCCCEEEEEECC----CeEEEEE
Q 008496          490 HRE--PVYSLAFSPTGEYLASGSLDKS--MHIWSLKEGKIVKTYTG-NGGIFEVCWNKEGDKIAACFAN----HTVCVLD  560 (563)
Q Consensus       490 h~~--~i~~l~~spdg~~lasgs~dg~--v~iw~~~~~~~~~~~~~-~~~i~~l~w~~~g~~la~~~~~----~~v~v~~  560 (563)
                      |..  .+..++|++++.+++++..|+.  |.+|++.+|+.++.+.. .+.+..++++|+++.|++.+.+    +++.+||
T Consensus       332 ~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d  411 (710)
T 2xdw_A          332 EHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCD  411 (710)
T ss_dssp             CCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEE
T ss_pred             CCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEE
Confidence            543  6888999988888899988884  66777777887776654 3457889999999988876554    4677777


Q ss_pred             e
Q 008496          561 F  561 (563)
Q Consensus       561 ~  561 (563)
                      +
T Consensus       412 ~  412 (710)
T 2xdw_A          412 L  412 (710)
T ss_dssp             T
T ss_pred             C
Confidence            5

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.69  E-value=1.5e-14  Score=142.41  Aligned_cols=265  Identities=11%  Similarity=0.055  Sum_probs=177.2

Q ss_pred             ceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEEeCCC
Q 008496          217 EVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDG  296 (563)
Q Consensus       217 ~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~dg  296 (563)
                      .|.+++|+|++..++..+.++.++.|.-.                ....+.    .....+.+++|+++|++++++..++
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~----~~~~~~~~~~~~~~g~l~~~~~~~~   66 (333)
T 2dg1_A            7 DLPTLFYSGKSNSAVPIISESELQTITAE----------------PWLEIS----KKGLQLEGLNFDRQGQLFLLDVFEG   66 (333)
T ss_dssp             CCCBCCSCGGGGCSSCCCCGGGSCEEECE----------------EEEEEE----SSCCCEEEEEECTTSCEEEEETTTC
T ss_pred             ccceeeecCCccceeEEeecccCcccccc----------------eeEEEe----ccCccccCcEECCCCCEEEEECCCC
Confidence            46678899988777777888888888311                011111    1234578999999999888889999


Q ss_pred             eEEEEEcCCceeE-eeccCCCCEEEEEeCCCCCEEEEeeCC----CcEEEEECCCCceeEEee--ecccCeEEEecCCCc
Q 008496          297 QARIWSTNGDLKC-TLSKHKGPIFSLKWNKKGDYLLTGSCD----KTAIVWDVKTEEWKQQFE--FHSGPTLDVDWRNNV  369 (563)
Q Consensus       297 ~i~vw~~~~~~~~-~~~~h~~~V~~l~~~~~~~~l~s~s~D----~~v~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~  369 (563)
                      .|.+|+..+.... ....+...+.+++|+|+|+.+++...+    +.|.+||..++.....+.  .....+.++.+..+.
T Consensus        67 ~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g  146 (333)
T 2dg1_A           67 NIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKG  146 (333)
T ss_dssp             EEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTS
T ss_pred             EEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCC
Confidence            9999998754433 333567789999999999888877666    689999998876553332  122345666666554


Q ss_pred             eEEEEeC-------CCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEE-EEEeCCCcEEEEeCCC-Cceeee-----
Q 008496          370 SFATSST-------DNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLL-ASCSDDVTAKIWNMKQ-DKYVHD-----  435 (563)
Q Consensus       370 ~~~~~~~-------d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l-as~s~dg~i~iwd~~~-~~~~~~-----  435 (563)
                      .+..+..       .+.|+.++....+. ..+..+...+..++|+|+++.| ++.+.++.|.+|+..+ +..+..     
T Consensus       147 ~l~v~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~  225 (333)
T 2dg1_A          147 GFYFTDFRGYSTNPLGGVYYVSPDFRTV-TPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATI  225 (333)
T ss_dssp             CEEEEECCCBTTBCCEEEEEECTTSCCE-EEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEE
T ss_pred             CEEEEeccccccCCCceEEEEeCCCCEE-EEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceE
Confidence            4444333       24566665543332 2232233457899999999855 5556688999999864 222211     


Q ss_pred             ---ecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCC------CEEEEEEcCCCCEE
Q 008496          436 ---LREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHRE------PVYSLAFSPTGEYL  506 (563)
Q Consensus       436 ---~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~------~i~~l~~spdg~~l  506 (563)
                         +..+ ..+..+++++++.         ++++...++.|.+||. .++.+..+..+..      .+.+++|+||+..|
T Consensus       226 ~~~~~~~-~~~~~i~~d~~G~---------l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L  294 (333)
T 2dg1_A          226 PYYFTGH-EGPDSCCIDSDDN---------LYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQL  294 (333)
T ss_dssp             EEECCSS-SEEEEEEEBTTCC---------EEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEE
T ss_pred             EEecCCC-CCCCceEECCCCC---------EEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCCEE
Confidence               1112 3567788888774         5666667899999998 4666666654332      58899999998777


Q ss_pred             EEEeCCC
Q 008496          507 ASGSLDK  513 (563)
Q Consensus       507 asgs~dg  513 (563)
                      ..++.++
T Consensus       295 ~v~~~~g  301 (333)
T 2dg1_A          295 IICSNDI  301 (333)
T ss_dssp             EEEEECG
T ss_pred             EEEeCcc
Confidence            6555553

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.69  E-value=1.6e-14  Score=143.79  Aligned_cols=262  Identities=9%  Similarity=0.056  Sum_probs=174.6

Q ss_pred             CCCEEEEEe------CCCeEEEEEcC-CceeEeeccCCCCEEEEEeCCCCCEEEEee----------CCCcEEEEECCCC
Q 008496          285 EGTLLATGS------YDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGS----------CDKTAIVWDVKTE  347 (563)
Q Consensus       285 ~g~~l~sg~------~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s----------~D~~v~iwd~~~~  347 (563)
                      +++++++..      .|+.|.+||.. +++...+..+..+  .++|+|+|+++++++          .+++|.+||+.+.
T Consensus        14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~   91 (361)
T 2oiz_A           14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKL   91 (361)
T ss_dssp             GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTC
T ss_pred             CCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCC
Confidence            445555543      36899999964 5666667666666  899999999999886          3678999999998


Q ss_pred             ceeEEeeecc------cCeEEEecCCCc--eEEEEeC-CCeEEEEEcCCCcceee-ecCCCcceeEEEECCCC-CEEEEE
Q 008496          348 EWKQQFEFHS------GPTLDVDWRNNV--SFATSST-DNMIYVCKIGENRPIKT-FAGHQGEVNCVKWDPTG-SLLASC  416 (563)
Q Consensus       348 ~~~~~~~~~~------~~~~~~~~~~~~--~~~~~~~-d~~i~~~~~~~~~~~~~-~~~h~~~i~~~~~~~~~-~~las~  416 (563)
                      +....+....      .....+.+..+.  .+++... ++.|.+|++.+.+.+.. +.. . ....+.+.|++ ..+++.
T Consensus        92 ~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~-~-~~~~v~~~p~~~~~~~~~  169 (361)
T 2oiz_A           92 TFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAA-A-GCWSVIPQPNRPRSFMTI  169 (361)
T ss_dssp             CEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGG-T-TEEEEEECTTSSSEEEEE
T ss_pred             cEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecC-C-CcceeEEcCCCCeeEEEE
Confidence            8887776531      223344454433  3333333 68999999998887766 442 1 12235677876 677889


Q ss_pred             eCCCcEEEEeCCC-Cceeee------ecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeE--EEEe
Q 008496          417 SDDVTAKIWNMKQ-DKYVHD------LREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKL--LYSL  487 (563)
Q Consensus       417 s~dg~i~iwd~~~-~~~~~~------~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~--~~~~  487 (563)
                      +.||.+.+|++.. ++....      +.....++ .+.++|++        . .++..+.++.|.++|+..+..  +..+
T Consensus       170 ~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g--------~-~~~~~~~~~~v~v~d~~~~~~~~~~~~  239 (361)
T 2oiz_A          170 CGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPI-FIAPALDK--------D-KAHFVSYYGNVYSADFSGDEVKVDGPW  239 (361)
T ss_dssp             ETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCB-CSCCEECS--------S-EEEEEBTTSEEEEEECSSSSCEEEEEE
T ss_pred             CCCCcEEEEEECCCCcEeeeccccceEcCCCCce-EEEecccC--------C-EEEEEeCCCeEEEEEecCCCceecccc
Confidence            9999999998865 333311      11111111 11112222        1 234456889999999875432  2221


Q ss_pred             cC------CC----CCEEEEEEcCCCCEEEEEeC-----------CCcEEEEecCCCeeEEEEecCCCEEEEEEcCCCCE
Q 008496          488 NG------HR----EPVYSLAFSPTGEYLASGSL-----------DKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDK  546 (563)
Q Consensus       488 ~~------h~----~~i~~l~~spdg~~lasgs~-----------dg~v~iw~~~~~~~~~~~~~~~~i~~l~w~~~g~~  546 (563)
                      .-      +.    .....++|+||++.+.++..           .+.|.+||+.++++++++.... +..++|+|||++
T Consensus       240 ~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~-p~~ia~spdg~~  318 (361)
T 2oiz_A          240 SLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD-ALSMTIDQQRNL  318 (361)
T ss_dssp             ESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT-CCEEEEETTTTE
T ss_pred             cccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC-eeEEEECCCCCE
Confidence            10      00    11112789999887766542           3489999999999999998877 999999999999


Q ss_pred             EEEEECCCeEEEEEee
Q 008496          547 IAACFANHTVCVLDFR  562 (563)
Q Consensus       547 la~~~~~~~v~v~~~~  562 (563)
                      |+++.. ++|.|||.+
T Consensus       319 l~v~n~-~~v~v~D~~  333 (361)
T 2oiz_A          319 MLTLDG-GNVNVYDIS  333 (361)
T ss_dssp             EEEECS-SCEEEEECS
T ss_pred             EEEeCC-CeEEEEECC
Confidence            998876 899999964

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.69  E-value=5.7e-15  Score=159.71  Aligned_cols=235  Identities=9%  Similarity=-0.008  Sum_probs=154.7

Q ss_pred             CCeEEEEECCCCCEEEEEeCC----------CeEEEEEcCC------ceeEeec-cCCCCEEEEEeCCCCCEEEEeeCCC
Q 008496          275 KDVTTLDWNGEGTLLATGSYD----------GQARIWSTNG------DLKCTLS-KHKGPIFSLKWNKKGDYLLTGSCDK  337 (563)
Q Consensus       275 ~~V~~l~~s~~g~~l~sg~~d----------g~i~vw~~~~------~~~~~~~-~h~~~V~~l~~~~~~~~l~s~s~D~  337 (563)
                      ..+..++|||||+.|++++.+          ..|++|+..+      .....+. .+...+..++|+|+|++|+.++.++
T Consensus       130 ~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~  209 (662)
T 3azo_A          130 LRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDH  209 (662)
T ss_dssp             EEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECT
T ss_pred             ccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEecCCCcccCceECCCCCEEEEEECCC
Confidence            457899999999999999877          5899999887      5556666 6667888899999999999887653


Q ss_pred             --------cEEEEECC-CC---ceeEEeeecccCeEEEecCCCc-eEEEEeCCC--eEEEEEcCCCcceeeecCCCcc--
Q 008496          338 --------TAIVWDVK-TE---EWKQQFEFHSGPTLDVDWRNNV-SFATSSTDN--MIYVCKIGENRPIKTFAGHQGE--  400 (563)
Q Consensus       338 --------~v~iwd~~-~~---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~--~i~~~~~~~~~~~~~~~~h~~~--  400 (563)
                              .|.+||+. ++   ........+...+..+.|..+. .++++..++  .|++++...+.......++...  
T Consensus       210 ~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~  289 (662)
T 3azo_A          210 PRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAG  289 (662)
T ss_dssp             TCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSC
T ss_pred             CCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccC
Confidence                    79999998 56   4444444445677888887554 445555666  5667766555544433333322  


Q ss_pred             ------eeEEEECCCCCEEEEEeCCCcEEEE--eCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCe
Q 008496          401 ------VNCVKWDPTGSLLASCSDDVTAKIW--NMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDST  472 (563)
Q Consensus       401 ------i~~~~~~~~~~~las~s~dg~i~iw--d~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~  472 (563)
                            +.+++|+|+++++++++. +.++||  |..++. +..+..|...+..+ |++++.       ..++++++.+..
T Consensus       290 p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~-~~~l~~~~~~~~~~-~s~~~~-------~~~~~~~~~~~~  359 (662)
T 3azo_A          290 PLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE-LVDAAGPWTEWAAT-LTVSGT-------RAVGVAASPRTA  359 (662)
T ss_dssp             CCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE-EEECCSSCCEEEEE-EEEETT-------EEEEEEEETTEE
T ss_pred             ccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc-EEEecCCCCeEEEE-EecCCC-------EEEEEEcCCCCC
Confidence                  567899999999999999 999999  555554 56677777767666 244432       245666676654


Q ss_pred             --EEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 008496          473 --VKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWS  519 (563)
Q Consensus       473 --i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~  519 (563)
                        |.+||+.+++.......+...+....+++...+.+.+..+..|..|-
T Consensus       360 ~~i~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~dg~~i~~~~  408 (662)
T 3azo_A          360 YEVVELDTVTGRARTIGARHTDPVDPAYYPEPQIRTFTAPDGREIHAHI  408 (662)
T ss_dssp             EEEEEEETTTCCEEEEESCCCCSSCGGGSCCCEEEEEECTTSCEEEEEE
T ss_pred             CEEEEEECCCCceEEeecCCcccCCccccCcceEEEEEcCCCCEEEEEE
Confidence              55557767765443344433333333333333333333333555544

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.68  E-value=1.2e-14  Score=158.32  Aligned_cols=244  Identities=12%  Similarity=0.076  Sum_probs=167.8

Q ss_pred             CCCCceEEEEECCCCCEEEEeeCCC-----cEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCC
Q 008496          213 GHTSEVCACAWSPAGSLLASGSGDS-----TARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT  287 (563)
Q Consensus       213 ~h~~~V~~~~~sp~~~~latgs~D~-----~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~  287 (563)
                      +|...+..++|||||++||.++.++     .|++||+.++....         ..+..         ..+..++|+|||+
T Consensus       122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~---------~~~~~---------~~~~~~~wspDg~  183 (710)
T 2xdw_A          122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELP---------DVLER---------VKFSCMAWTHDGK  183 (710)
T ss_dssp             TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEE---------EEEEE---------ECSCCEEECTTSS
T ss_pred             CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCc---------ccccC---------cccceEEEEeCCC
Confidence            4555788999999999998876543     89999998654210         01110         1256789999999


Q ss_pred             EEEEEeCCCe----------------EEEEEcCCce---eEe--eccCCCCEEEEEeCCCCCEEEEeeC-----CCcEEE
Q 008496          288 LLATGSYDGQ----------------ARIWSTNGDL---KCT--LSKHKGPIFSLKWNKKGDYLLTGSC-----DKTAIV  341 (563)
Q Consensus       288 ~l~sg~~dg~----------------i~vw~~~~~~---~~~--~~~h~~~V~~l~~~~~~~~l~s~s~-----D~~v~i  341 (563)
                      .|+.++.++.                |++|++.+..   ...  ...|...+.++.|+|+|++|+.++.     +..|.+
T Consensus       184 ~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~  263 (710)
T 2xdw_A          184 GMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWY  263 (710)
T ss_dssp             EEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEE
T ss_pred             EEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEE
Confidence            9999988866                9999986532   222  2335566889999999999987765     456777


Q ss_pred             EECCC------CceeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEE
Q 008496          342 WDVKT------EEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLAS  415 (563)
Q Consensus       342 wd~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las  415 (563)
                      ||+.+      +..                                        ....+..+...+.. .|+|+|+.|+.
T Consensus       264 ~d~~~~~~~~~~~~----------------------------------------~~~~l~~~~~~~~~-~~s~dg~~l~~  302 (710)
T 2xdw_A          264 CDLQQESNGITGIL----------------------------------------KWVKLIDNFEGEYD-YVTNEGTVFTF  302 (710)
T ss_dssp             EEGGGSSSSSCSSC----------------------------------------CCEEEECSSSSCEE-EEEEETTEEEE
T ss_pred             EECcccccccCCcc----------------------------------------ceEEeeCCCCcEEE-EEeccCCEEEE
Confidence            77654      210                                        11222333333333 47788887776


Q ss_pred             EeCC----CcEEEEeCCCCce--eeeecccCC--CEEEEEEccCCCCCCCCCCcEEEEEEeCCCe--EEEEeCCCCeEEE
Q 008496          416 CSDD----VTAKIWNMKQDKY--VHDLREHSK--EIYTIRWSPTGSGTNNPNQQLILASASFDST--VKLWDVELGKLLY  485 (563)
Q Consensus       416 ~s~d----g~i~iwd~~~~~~--~~~~~~~~~--~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~--i~iwd~~~~~~~~  485 (563)
                      .+..    +.|.+||+.++..  ...+..|..  .+..+.|++.+         .++++...|+.  |.+||+.+|+.+.
T Consensus       303 ~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~---------~lv~~~~~~g~~~l~~~~~~~g~~~~  373 (710)
T 2xdw_A          303 KTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSN---------FLVLCYLHDVKNTLQLHDLATGALLK  373 (710)
T ss_dssp             EECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTT---------EEEEEEEETTEEEEEEEETTTCCEEE
T ss_pred             EECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCC---------EEEEEEEECCEEEEEEEECCCCCEEE
Confidence            6653    3599999887642  244445544  57788888544         37788888885  5667877788878


Q ss_pred             EecCCCCCEEEEEEcCCCCEEEEE-e---CCCcEEEEecCCCe
Q 008496          486 SLNGHREPVYSLAFSPTGEYLASG-S---LDKSMHIWSLKEGK  524 (563)
Q Consensus       486 ~~~~h~~~i~~l~~spdg~~lasg-s---~dg~v~iw~~~~~~  524 (563)
                      .+..+...|..++++|++..|+.. +   ..++|++||+.+++
T Consensus       374 ~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  416 (710)
T 2xdw_A          374 IFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (710)
T ss_dssp             EECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             ecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence            888777788999999999766532 2   34789999998876

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.67  E-value=4.6e-14  Score=136.38  Aligned_cols=259  Identities=14%  Similarity=0.100  Sum_probs=167.0

Q ss_pred             eeEecCCCCceEEEEECCCCC-EEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCC
Q 008496          208 VTILEGHTSEVCACAWSPAGS-LLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG  286 (563)
Q Consensus       208 ~~~l~~h~~~V~~~~~sp~~~-~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g  286 (563)
                      +..+..+.....+++|+|+++ +++++..++.|.+|+..++ .              ..+.    .....+.+++++++|
T Consensus        20 ~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~--------------~~~~----~~~~~~~~l~~~~dg   80 (296)
T 3e5z_A           20 ARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-L--------------SPEM----HPSHHQNGHCLNKQG   80 (296)
T ss_dssp             CEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-E--------------EEEE----SSCSSEEEEEECTTC
T ss_pred             EEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-e--------------EEEE----CCCCCcceeeECCCC
Confidence            345555666778999999998 8888888999999997643 1              0111    123568899999999


Q ss_pred             CEEEEEeCCCeEEEEEc-CCceeEeeccC----CCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeE
Q 008496          287 TLLATGSYDGQARIWST-NGDLKCTLSKH----KGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTL  361 (563)
Q Consensus       287 ~~l~sg~~dg~i~vw~~-~~~~~~~~~~h----~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~  361 (563)
                      +++++...++.|.+|+. .+.........    ...+..++++|+|+.+++.+..++...+......    .        
T Consensus        81 ~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~----~--------  148 (296)
T 3e5z_A           81 HLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGE----M--------  148 (296)
T ss_dssp             CEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCC----C--------
T ss_pred             cEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCcccccccccccccc----c--------
Confidence            98888777899999998 55543332221    1245678899999887773321110000000000    0        


Q ss_pred             EEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCC-CCce---eeeec
Q 008496          362 DVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMK-QDKY---VHDLR  437 (563)
Q Consensus       362 ~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~-~~~~---~~~~~  437 (563)
                                  ....+.|+.++..  ..+..+..+....+.++|+|+++++++.+.++.|.+|++. ++..   ...+.
T Consensus       149 ------------~~~~~~l~~~~~~--g~~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~  214 (296)
T 3e5z_A          149 ------------ELPGRWVFRLAPD--GTLSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFT  214 (296)
T ss_dssp             ------------CSSSCEEEEECTT--SCEEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEEC
T ss_pred             ------------cCCCcEEEEECCC--CCEEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEee
Confidence                        0001122222221  1122233344567889999999998888888999999986 4443   22232


Q ss_pred             ccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEE-cCCCCEEEEEeCCCcEE
Q 008496          438 EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAF-SPTGEYLASGSLDKSMH  516 (563)
Q Consensus       438 ~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~-spdg~~lasgs~dg~v~  516 (563)
                      .+...+..+++.++|.         ++++.  ++.|.+||.. ++.+..+..+.. +++++| +|+++.|.+++.++ +.
T Consensus       215 ~~~~~p~~i~~d~~G~---------l~v~~--~~~v~~~~~~-g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~-l~  280 (296)
T 3e5z_A          215 VEPGKTDGLRVDAGGL---------IWASA--GDGVHVLTPD-GDELGRVLTPQT-TSNLCFGGPEGRTLYMTVSTE-FW  280 (296)
T ss_dssp             CSSSCCCSEEEBTTSC---------EEEEE--TTEEEEECTT-SCEEEEEECSSC-CCEEEEESTTSCEEEEEETTE-EE
T ss_pred             CCCCCCCeEEECCCCC---------EEEEc--CCeEEEECCC-CCEEEEEECCCC-ceeEEEECCCCCEEEEEcCCe-EE
Confidence            3444556788888774         33333  7899999987 778777777766 899999 69999999888765 55


Q ss_pred             EEecCCCee
Q 008496          517 IWSLKEGKI  525 (563)
Q Consensus       517 iw~~~~~~~  525 (563)
                      -++..+.++
T Consensus       281 ~~~~~~~~~  289 (296)
T 3e5z_A          281 SIETNVRGL  289 (296)
T ss_dssp             EEECSCCBC
T ss_pred             EEEcccccc
Confidence            666666554

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.64  E-value=5.2e-15  Score=160.79  Aligned_cols=243  Identities=10%  Similarity=0.056  Sum_probs=162.8

Q ss_pred             CCCCceEEEEECCCCCEEE-----EeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCC
Q 008496          213 GHTSEVCACAWSPAGSLLA-----SGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT  287 (563)
Q Consensus       213 ~h~~~V~~~~~sp~~~~la-----tgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~  287 (563)
                      +|...+..++|||||++||     +|+.+..|++||+.++.....   .        ..    .  ......++|+|||+
T Consensus       118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~---~--------~~----~--~~~~~~~~wspDg~  180 (695)
T 2bkl_A          118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKV---D--------VI----E--GGKYATPKWTPDSK  180 (695)
T ss_dssp             SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSS---C--------CB----S--CCTTCCCEECTTSS
T ss_pred             CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCC---c--------cc----C--cccccceEEecCCC
Confidence            5666789999999999998     455567999999987653200   0        00    0  01125689999999


Q ss_pred             EEEEEeCCCe-------------EEEEEcCCce-----eEeeccCCCCEEEEEeCCCCCEEEEeeCCC----cEEEEECC
Q 008496          288 LLATGSYDGQ-------------ARIWSTNGDL-----KCTLSKHKGPIFSLKWNKKGDYLLTGSCDK----TAIVWDVK  345 (563)
Q Consensus       288 ~l~sg~~dg~-------------i~vw~~~~~~-----~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~----~v~iwd~~  345 (563)
                      .|+.++.|..             |++|+..+..     ......|...+.++.|+|+|++|+.++.++    .|.+||..
T Consensus       181 ~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~  260 (695)
T 2bkl_A          181 GFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPG  260 (695)
T ss_dssp             EEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTT
T ss_pred             EEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCC
Confidence            9999998776             9999986432     223344667889999999999998887766    67777766


Q ss_pred             CCceeEEeeecccCeEEEecCCCceEEEEe----CCCeEEEEEcCCCcc---eeeecCC-CcceeEEEECCCCCEEEEEe
Q 008496          346 TEEWKQQFEFHSGPTLDVDWRNNVSFATSS----TDNMIYVCKIGENRP---IKTFAGH-QGEVNCVKWDPTGSLLASCS  417 (563)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~d~~i~~~~~~~~~~---~~~~~~h-~~~i~~~~~~~~~~~las~s  417 (563)
                      ++.+.. +..+........|.++. ++..+    .++.|++|++....+   ...+..+ ...+..++|+ ++.++++..
T Consensus       261 ~~~~~~-l~~~~~~~~~~~~~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~  337 (695)
T 2bkl_A          261 EKDFRL-LVKGVGAKYEVHAWKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYL  337 (695)
T ss_dssp             CSSCEE-EEECSSCCEEEEEETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEE
T ss_pred             CCceEE-eecCCCceEEEEecCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEE
Confidence            665443 33333334444455555 44433    357899999876543   2333333 4457888888 778899999


Q ss_pred             CCCcEEEEeCC-CCceeeeeccc-CCCEEEEEEccCCCCCCCCCCcEEEEEEe---CCCeEEEEeCCCCeE
Q 008496          418 DDVTAKIWNMK-QDKYVHDLREH-SKEIYTIRWSPTGSGTNNPNQQLILASAS---FDSTVKLWDVELGKL  483 (563)
Q Consensus       418 ~dg~i~iwd~~-~~~~~~~~~~~-~~~i~~~~~~p~~~~~~~~~~~~~l~s~s---~dg~i~iwd~~~~~~  483 (563)
                      .|+..+||.+. .+.....+..+ ...+..+.++|++.        .++++.+   ..++|++||+.+++.
T Consensus       338 ~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~--------~l~~~~ss~~~P~~v~~~d~~~g~~  400 (695)
T 2bkl_A          338 KDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLD--------DAYYVFTSFTTPRQIYKTSVSTGKS  400 (695)
T ss_dssp             ETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCS--------EEEEEEEETTEEEEEEEEETTTCCE
T ss_pred             ECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCC--------EEEEEEcCCCCCCEEEEEECCCCcE
Confidence            99998888654 34445555544 45566667766553        2333332   247899999988764

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.63  E-value=1.1e-13  Score=131.64  Aligned_cols=235  Identities=7%  Similarity=-0.039  Sum_probs=160.5

Q ss_pred             CEEEEEeCCCCCEEE-EeeCCCcEEEEECCCCceeEEeeecccCeEEEecCCC-ceEEEEeCCCeEEEEEcCCCcceeee
Q 008496          317 PIFSLKWNKKGDYLL-TGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNN-VSFATSSTDNMIYVCKIGENRPIKTF  394 (563)
Q Consensus       317 ~V~~l~~~~~~~~l~-s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~i~~~~~~~~~~~~~~  394 (563)
                      ...+++++++|+.++ +.+.++.|.+||..+.............+..+.+..+ ..+++.. ++.|++|+....... .+
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~-~~  102 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQT-VL  102 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCE-EC
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEe-ee
Confidence            568899999998777 5577899999997665432211112123445555443 3444444 888999987654432 23


Q ss_pred             c-CCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeE
Q 008496          395 A-GHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTV  473 (563)
Q Consensus       395 ~-~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i  473 (563)
                      . .....+.+++++++|+++++...++.|.+|+..+.............+..+++.|++.         ++++...++.|
T Consensus       103 ~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~---------l~v~~~~~~~i  173 (270)
T 1rwi_B          103 PFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGN---------VYVTDTDNNRV  173 (270)
T ss_dssp             CCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCC---------EEEEEGGGTEE
T ss_pred             ecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCC---------EEEEECCCCEE
Confidence            2 2335688999999999888888888999998665543322222233567788888764         56666667899


Q ss_pred             EEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEec-CCCEEEEEEcCCCCEEEEEEC
Q 008496          474 KLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTG-NGGIFEVCWNKEGDKIAACFA  552 (563)
Q Consensus       474 ~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~-~~~i~~l~w~~~g~~la~~~~  552 (563)
                      .+||............+...+.+++++|+|.++++...++.|.+|+............ ...+.+++++++|+.+++...
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~  253 (270)
T 1rwi_B          174 VKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRG  253 (270)
T ss_dssp             EEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGG
T ss_pred             EEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECC
Confidence            9999887665443333335689999999998888877788999999876544332212 246889999999998888888


Q ss_pred             CCeEEEEEee
Q 008496          553 NHTVCVLDFR  562 (563)
Q Consensus       553 ~~~v~v~~~~  562 (563)
                      ++.|.+++..
T Consensus       254 ~~~v~~~~~~  263 (270)
T 1rwi_B          254 NDRVVKLTSL  263 (270)
T ss_dssp             GTEEEEECCC
T ss_pred             CCEEEEEcCC
Confidence            9999999764

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.63  E-value=1e-13  Score=131.73  Aligned_cols=238  Identities=8%  Similarity=0.012  Sum_probs=165.1

Q ss_pred             CeEEEEECCCCCEEE-EEeCCCeEEEEEcCCceeEee-ccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEe
Q 008496          276 DVTTLDWNGEGTLLA-TGSYDGQARIWSTNGDLKCTL-SKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQF  353 (563)
Q Consensus       276 ~V~~l~~s~~g~~l~-sg~~dg~i~vw~~~~~~~~~~-~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~  353 (563)
                      ...+++++++|++++ +.+.++.|.+|+..+.....+ ..+...+.+++++++|+.+++.. ++.|.+||..+..... +
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~-~  102 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTV-L  102 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCEE-C
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEee-e
Confidence            578899999999777 547789999998765443332 22334678899999998666655 8899999987654332 2


Q ss_pred             ee-cccCeEEEecCC-CceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCc
Q 008496          354 EF-HSGPTLDVDWRN-NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDK  431 (563)
Q Consensus       354 ~~-~~~~~~~~~~~~-~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~  431 (563)
                      .. ....+..+.+.. ...+++...++.|++++.+..............+.+++++++|+++++...++.|.+||.....
T Consensus       103 ~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~  182 (270)
T 1rwi_B          103 PFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNN  182 (270)
T ss_dssp             CCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCC
T ss_pred             ecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCc
Confidence            21 113455565543 3455666677889888765544332222333467889999999988888778899999988766


Q ss_pred             eeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeC
Q 008496          432 YVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSL  511 (563)
Q Consensus       432 ~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~  511 (563)
                      .......+...+..+++.++|.         ++++...++.|.+||............+...+.+++++|+|+++++...
T Consensus       183 ~~~~~~~~~~~p~~i~~d~~g~---------l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~  253 (270)
T 1rwi_B          183 QVVLPFTDITAPWGIAVDEAGT---------VYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRG  253 (270)
T ss_dssp             EEECCCSSCCSEEEEEECTTCC---------EEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGG
T ss_pred             eEeecccCCCCceEEEECCCCC---------EEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECC
Confidence            5433333336688999988764         5666667889999998765443322233356899999999998899889


Q ss_pred             CCcEEEEecCCCe
Q 008496          512 DKSMHIWSLKEGK  524 (563)
Q Consensus       512 dg~v~iw~~~~~~  524 (563)
                      +++|++|++...+
T Consensus       254 ~~~v~~~~~~~~~  266 (270)
T 1rwi_B          254 NDRVVKLTSLEHH  266 (270)
T ss_dssp             GTEEEEECCCGGG
T ss_pred             CCEEEEEcCCCcc
Confidence            9999999987544

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.63  E-value=3.1e-13  Score=132.66  Aligned_cols=280  Identities=10%  Similarity=0.027  Sum_probs=189.7

Q ss_pred             CCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcC-CceeEeecc
Q 008496          235 GDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTN-GDLKCTLSK  313 (563)
Q Consensus       235 ~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~-~~~~~~~~~  313 (563)
                      .+++|.+||..+++......           ..............+.+. +++++++...++.|.+||.. ++...++. 
T Consensus        15 ~~~~l~~~d~~t~~~~~~i~-----------~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~-   81 (328)
T 3dsm_A           15 SNATLSYYDPATCEVENEVF-----------YRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT-   81 (328)
T ss_dssp             CCBEEEEEETTTTEEECSHH-----------HHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE-
T ss_pred             CCceEEEEECCCCEEhhhhH-----------hhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC-
Confidence            48899999987654211100           000000111235666664 35566666678999999986 55556664 


Q ss_pred             CCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeeccc-----CeEEEecCCCceEEEEe-CCCeEEEEEcCC
Q 008496          314 HKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSG-----PTLDVDWRNNVSFATSS-TDNMIYVCKIGE  387 (563)
Q Consensus       314 h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~-~d~~i~~~~~~~  387 (563)
                      .......+++++++...++...++.|.+||+.+++....+.....     ....+.+.+...+++.. .++.|.+++..+
T Consensus        82 ~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~~~~~lyv~~~~~~~~v~viD~~t  161 (328)
T 3dsm_A           82 GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQYGKYVYVNCWSYQNRILKIDTET  161 (328)
T ss_dssp             CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEEETTEEEEEECTTCCEEEEEETTT
T ss_pred             CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEEECCEEEEEcCCCCCEEEEEECCC
Confidence            345678999999984444444789999999999988777665430     22234444555556654 488999999998


Q ss_pred             CcceeeecCCCcceeEEEECCCCCEEEEEeCC----------CcEEEEeCCCCceeeeeccc-CCCEEEEEEccCCCCCC
Q 008496          388 NRPIKTFAGHQGEVNCVKWDPTGSLLASCSDD----------VTAKIWNMKQDKYVHDLREH-SKEIYTIRWSPTGSGTN  456 (563)
Q Consensus       388 ~~~~~~~~~h~~~i~~~~~~~~~~~las~s~d----------g~i~iwd~~~~~~~~~~~~~-~~~i~~~~~~p~~~~~~  456 (563)
                      .+.+..+... .....++++|+|++++++..+          +.|.+||..+++....+... ......++++|++.   
T Consensus       162 ~~~~~~i~~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~---  237 (328)
T 3dsm_A          162 DKVVDELTIG-IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRD---  237 (328)
T ss_dssp             TEEEEEEECS-SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSC---
T ss_pred             CeEEEEEEcC-CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCC---
Confidence            8877666542 245688999999988877665          78999999988877665432 23578999999765   


Q ss_pred             CCCCcEEEEEEeCCCeEEEEeCCCCeEEEE--ecCCCCCEEEEEEcC-CCCEEEEE----eCCCcEEEEecCCCeeEEEE
Q 008496          457 NPNQQLILASASFDSTVKLWDVELGKLLYS--LNGHREPVYSLAFSP-TGEYLASG----SLDKSMHIWSLKEGKIVKTY  529 (563)
Q Consensus       457 ~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~--~~~h~~~i~~l~~sp-dg~~lasg----s~dg~v~iw~~~~~~~~~~~  529 (563)
                            .|..+..  .|.+||..+++....  +.........++++| ++.++++.    ..++.|.+||.. |++++++
T Consensus       238 ------~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i  308 (328)
T 3dsm_A          238 ------TLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEF  308 (328)
T ss_dssp             ------EEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEE
T ss_pred             ------EEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEE
Confidence                  3433332  899999988775321  121235678999999 56666666    578899999998 9999988


Q ss_pred             ecCCCEEEEEE
Q 008496          530 TGNGGIFEVCW  540 (563)
Q Consensus       530 ~~~~~i~~l~w  540 (563)
                      ........++|
T Consensus       309 ~~G~~P~~~~~  319 (328)
T 3dsm_A          309 YVGIIPGAFCW  319 (328)
T ss_dssp             EEEESEEEEEE
T ss_pred             EeccCcceEEE
Confidence            76555666666

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.62  E-value=3.9e-13  Score=128.16  Aligned_cols=242  Identities=14%  Similarity=0.149  Sum_probs=175.1

Q ss_pred             CCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCC
Q 008496          226 AGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNG  305 (563)
Q Consensus       226 ~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~  305 (563)
                      .+++|++++.|+.|.+||..+++.             +..+...   ....+.+++++|+|++++  +.++.|..|+.+|
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~-------------~w~~~~~---~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~~G   65 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEI-------------VWEYPLE---KGWECNSVAATKAGEILF--SYSKGAKMITRDG   65 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEE-------------EEEEECC---TTCCCCEEEECTTSCEEE--ECBSEEEEECTTS
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeE-------------EEEeCCC---ccCCCcCeEECCCCCEEE--eCCCCEEEECCCC
Confidence            457899999999999999876642             1122111   113578889999999988  4578899999998


Q ss_pred             ceeEeeccC-CCCEEEEEeCCCCCEEEEeeC-CCcEEEEECCCCceeEEeeecccCeEEEecCCCceEEEEeCCCeEEEE
Q 008496          306 DLKCTLSKH-KGPIFSLKWNKKGDYLLTGSC-DKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVC  383 (563)
Q Consensus       306 ~~~~~~~~h-~~~V~~l~~~~~~~~l~s~s~-D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~  383 (563)
                      +.+..+..+ ...+.++.+.++|+.+++.+. ++.+..+|. +++.+..+..                            
T Consensus        66 ~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~----------------------------  116 (276)
T 3no2_A           66 RELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEF----------------------------  116 (276)
T ss_dssp             CEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEE----------------------------
T ss_pred             CEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEec----------------------------
Confidence            888877765 357889999999999999887 777777775 5554443321                            


Q ss_pred             EcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEE
Q 008496          384 KIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLI  463 (563)
Q Consensus       384 ~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~  463 (563)
                        ...     ..++......+++.++|+++++.+.++.|.+||.. ++.+..+... ...+++...+++.         +
T Consensus       117 --~~~-----~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~-~~~~~~~~~~~g~---------~  178 (276)
T 3no2_A          117 --ETG-----IERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLS-GTPFSSAFLDNGD---------C  178 (276)
T ss_dssp             --CCS-----CSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECS-SCCCEEEECTTSC---------E
T ss_pred             --cCC-----CCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEECC-CCccceeEcCCCC---------E
Confidence              100     01111234456778999999999999999999988 8888777654 3455666667664         6


Q ss_pred             EEEEeCCCeEEEEeCCCCeEEEEecCCC------CCEEEEEEcCCCCEEEEEeC--C------CcEEEEec-CCCeeEEE
Q 008496          464 LASASFDSTVKLWDVELGKLLYSLNGHR------EPVYSLAFSPTGEYLASGSL--D------KSMHIWSL-KEGKIVKT  528 (563)
Q Consensus       464 l~s~s~dg~i~iwd~~~~~~~~~~~~h~------~~i~~l~~spdg~~lasgs~--d------g~v~iw~~-~~~~~~~~  528 (563)
                      +++++.++.|..+|..+|+.++++..+.      ..+..++..++|..+++...  .      +..+++.+ .+|+++.+
T Consensus       179 ~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~  258 (276)
T 3no2_A          179 LVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQ  258 (276)
T ss_dssp             EEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBEEEE
T ss_pred             EEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEeccCccccccccCCceEEEECCCCCEEEE
Confidence            7777778899999999999999986432      22788999999999888741  1      23355666 68889888


Q ss_pred             EecC
Q 008496          529 YTGN  532 (563)
Q Consensus       529 ~~~~  532 (563)
                      |...
T Consensus       259 ~~~~  262 (276)
T 3no2_A          259 LNDK  262 (276)
T ss_dssp             ECCT
T ss_pred             ecCc
Confidence            8654

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.62  E-value=2e-13  Score=130.22  Aligned_cols=212  Identities=18%  Similarity=0.141  Sum_probs=161.4

Q ss_pred             CCCEEEEEeCCCeEEEEEc-CCceeEeeccCC-CCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEE
Q 008496          285 EGTLLATGSYDGQARIWST-NGDLKCTLSKHK-GPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLD  362 (563)
Q Consensus       285 ~g~~l~sg~~dg~i~vw~~-~~~~~~~~~~h~-~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~  362 (563)
                      .+++|++++.++.|.+||. +|+....+..+. ..+.++.+.|+|+.++  +.++.|..||. +++.+..+..       
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~-------   73 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAA-------   73 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEEC-------
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcC-------
Confidence            4688999999999999998 888888887766 4678899999999888  35778999998 6664433321       


Q ss_pred             EecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeC-CCcEEEEeCCCCceeeeecc---
Q 008496          363 VDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD-DVTAKIWNMKQDKYVHDLRE---  438 (563)
Q Consensus       363 ~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~-dg~i~iwd~~~~~~~~~~~~---  438 (563)
                                                       ++...+.++.+.++|+++++.+. ++.+..+|. +++.+..+..   
T Consensus        74 ---------------------------------~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~  119 (276)
T 3no2_A           74 ---------------------------------PAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETG  119 (276)
T ss_dssp             ---------------------------------CTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCS
T ss_pred             ---------------------------------CCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCC
Confidence                                             01124567788899999888877 777777775 5555544431   


Q ss_pred             ---cCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcE
Q 008496          439 ---HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSM  515 (563)
Q Consensus       439 ---~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v  515 (563)
                         +......+...++|.         ++++.+.++.|..||.. |+.++++... ..+.++.+.++|..+++++.+++|
T Consensus       120 ~~~~~~~~~~v~~~~~G~---------~lv~~~~~~~v~~~d~~-G~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v  188 (276)
T 3no2_A          120 IERPHAQFRQINKNKKGN---------YLVPLFATSEVREIAPN-GQLLNSVKLS-GTPFSSAFLDNGDCLVACGDAHCF  188 (276)
T ss_dssp             CSSGGGSCSCCEECTTSC---------EEEEETTTTEEEEECTT-SCEEEEEECS-SCCCEEEECTTSCEEEECBTTSEE
T ss_pred             CCcccccccCceECCCCC---------EEEEecCCCEEEEECCC-CCEEEEEECC-CCccceeEcCCCCEEEEeCCCCeE
Confidence               112233344555553         67888899999999998 9999998765 345678889999999999988899


Q ss_pred             EEEecCCCeeEEEEecCC-------CEEEEEEcCCCCEEEEEE
Q 008496          516 HIWSLKEGKIVKTYTGNG-------GIFEVCWNKEGDKIAACF  551 (563)
Q Consensus       516 ~iw~~~~~~~~~~~~~~~-------~i~~l~w~~~g~~la~~~  551 (563)
                      ..+|..+|+++..+....       .+..++..++|+.+++.+
T Consensus       189 ~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~  231 (276)
T 3no2_A          189 VQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNW  231 (276)
T ss_dssp             EEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEE
T ss_pred             EEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEec
Confidence            999999999999986421       267888999999998886

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.60  E-value=1.4e-11  Score=118.71  Aligned_cols=270  Identities=9%  Similarity=0.050  Sum_probs=187.5

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCeEEEEEcCCceeE-eeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEe
Q 008496          275 KDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKC-TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQF  353 (563)
Q Consensus       275 ~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~~~-~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~  353 (563)
                      ..+.++++.++|++.++...++.|.+|+..+.... .+..+...+.++.+.++|+.+++...++.|..||.. ++.. .+
T Consensus        20 ~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~-~~   97 (300)
T 2qc5_A           20 SGPYGITSSEDGKVWFTQHKANKISSLDQSGRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFT-EY   97 (300)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE-EE
T ss_pred             CCcceeeECCCCCEEEEcCCCCeEEEECCCCceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeE-Ee
Confidence            46889999999998888778899999998855433 223344678999999999888877778899999987 5543 23


Q ss_pred             ee--cccCeEEEecCC-CceEEEEeCCCeEEEEEcCCCcce-eeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCC
Q 008496          354 EF--HSGPTLDVDWRN-NVSFATSSTDNMIYVCKIGENRPI-KTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQ  429 (563)
Q Consensus       354 ~~--~~~~~~~~~~~~-~~~~~~~~~d~~i~~~~~~~~~~~-~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~  429 (563)
                      ..  ....+..+.... ...+++...++.|+.++.. ++.. ..+......+.++++++++++.++...++.|..|+. +
T Consensus        98 ~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~  175 (300)
T 2qc5_A           98 PLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-T  175 (300)
T ss_dssp             ECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-T
T ss_pred             cCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-C
Confidence            22  223455555543 3455555557788888876 3322 223334456889999999998777777889999998 4


Q ss_pred             Cceee-eecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEE-EecCCCCCEEEEEEcCCCCEEE
Q 008496          430 DKYVH-DLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLY-SLNGHREPVYSLAFSPTGEYLA  507 (563)
Q Consensus       430 ~~~~~-~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~-~~~~h~~~i~~l~~spdg~~la  507 (563)
                      +.... .+..+...+..+++.+++.         +.++....+.|.+||. +++... .+..+...+.+++++++|++++
T Consensus       176 g~~~~~~~~~~~~~~~~i~~d~~g~---------l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v  245 (300)
T 2qc5_A          176 GKLEEYPLPTNAAAPVGITSGNDGA---------LWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWF  245 (300)
T ss_dssp             CCEEEEECSSTTCCEEEEEECTTSS---------EEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEE
T ss_pred             CcEEEeeCCCCCCCcceEEECCCCC---------EEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEE
Confidence            44332 2223345678888888764         4555555678999998 455433 3334456689999999999777


Q ss_pred             EEeCCCcEEEEecCCCeeEEEEec---CCCEEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496          508 SGSLDKSMHIWSLKEGKIVKTYTG---NGGIFEVCWNKEGDKIAACFANHTVCVLDFR  562 (563)
Q Consensus       508 sgs~dg~v~iw~~~~~~~~~~~~~---~~~i~~l~w~~~g~~la~~~~~~~v~v~~~~  562 (563)
                      +...++.|..|+. +++.. .+..   ...+.+++.+++|+..++.. + .|..+|.+
T Consensus       246 ~~~~~~~i~~~~~-~g~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p~  299 (300)
T 2qc5_A          246 TEWGANQIGRITN-DNTIQ-EYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKLNLN  299 (300)
T ss_dssp             EETTTTEEEEECT-TSCEE-EEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEEEEC
T ss_pred             eccCCCeEEEECC-CCcEE-EEECCccCCccceeEeCCCCCEEEEcc-C-ceEEeCCC
Confidence            7767789999998 55543 3322   34578899999998666555 5 78777754

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.60  E-value=6.4e-14  Score=152.22  Aligned_cols=266  Identities=11%  Similarity=0.037  Sum_probs=172.9

Q ss_pred             CCCCEEEEEeCCC---eEEEE--EcCCceeEee-------ccCCCCEEEEEeCCCCCEEE-----EeeCCCcEEEEECCC
Q 008496          284 GEGTLLATGSYDG---QARIW--STNGDLKCTL-------SKHKGPIFSLKWNKKGDYLL-----TGSCDKTAIVWDVKT  346 (563)
Q Consensus       284 ~~g~~l~sg~~dg---~i~vw--~~~~~~~~~~-------~~h~~~V~~l~~~~~~~~l~-----s~s~D~~v~iwd~~~  346 (563)
                      |+|.+++....++   .-.||  +..+.....+       .+|...+.+++|||+|++|+     +|+.+.+|++||+.+
T Consensus        77 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~t  156 (695)
T 2bkl_A           77 RRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDS  156 (695)
T ss_dssp             EETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTT
T ss_pred             EECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCC
Confidence            4566666555443   23444  3333222222       24556789999999999988     444557899999999


Q ss_pred             CceeEEeeecccCeEEEecCCC-ceEEEEeCCCe-------------EEEEEcCCCcc--eeee--cCCCcceeEEEECC
Q 008496          347 EEWKQQFEFHSGPTLDVDWRNN-VSFATSSTDNM-------------IYVCKIGENRP--IKTF--AGHQGEVNCVKWDP  408 (563)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~-------------i~~~~~~~~~~--~~~~--~~h~~~i~~~~~~~  408 (563)
                      ++..............+.|.++ ..|+.++.+..             |++|++++...  ...+  ..|...+.++.|+|
T Consensus       157 g~~~~~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~Sp  236 (695)
T 2bkl_A          157 GEWSKVDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSR  236 (695)
T ss_dssp             CCBCSSCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECT
T ss_pred             CCCcCCcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECC
Confidence            8764111111111256788765 45666666655             99999987652  2333  34556788999999


Q ss_pred             CCCEEEEEeCCC----cEEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEe---CCCeEEEEeCCCC
Q 008496          409 TGSLLASCSDDV----TAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASAS---FDSTVKLWDVELG  481 (563)
Q Consensus       409 ~~~~las~s~dg----~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s---~dg~i~iwd~~~~  481 (563)
                      ||++|+.++.++    .|.+|+..++. ...+..+...+....| +++        . ++++..   .++.|.+||+.++
T Consensus       237 DG~~l~~~~~~~~~~~~l~~~~~~~~~-~~~l~~~~~~~~~~~~-~~g--------~-l~~~s~~~~~~~~l~~~d~~~~  305 (695)
T 2bkl_A          237 DGKYLFVYILRGWSENDVYWKRPGEKD-FRLLVKGVGAKYEVHA-WKD--------R-FYVLTDEGAPRQRVFEVDPAKP  305 (695)
T ss_dssp             TSCCEEEEEEETTTEEEEEEECTTCSS-CEEEEECSSCCEEEEE-ETT--------E-EEEEECTTCTTCEEEEEBTTBC
T ss_pred             CCCEEEEEEeCCCCceEEEEEcCCCCc-eEEeecCCCceEEEEe-cCC--------c-EEEEECCCCCCCEEEEEeCCCC
Confidence            999988877665    66777655443 3344555555666666 443        2 344444   3589999999876


Q ss_pred             eE--EEEecCC--CCCEEEEEEcCCCCEEEEEeCCCcEEEEecC-CCeeEEEEec--CCCEEEEEEcCCCCEEEEEECC-
Q 008496          482 KL--LYSLNGH--REPVYSLAFSPTGEYLASGSLDKSMHIWSLK-EGKIVKTYTG--NGGIFEVCWNKEGDKIAACFAN-  553 (563)
Q Consensus       482 ~~--~~~~~~h--~~~i~~l~~spdg~~lasgs~dg~v~iw~~~-~~~~~~~~~~--~~~i~~l~w~~~g~~la~~~~~-  553 (563)
                      ..  ...+..+  ...|..++|+ ++.+++++..|+..+||.+. +++.++.+..  .+.+..++|+|+|+.|++.+.+ 
T Consensus       306 ~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~  384 (695)
T 2bkl_A          306 ARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSF  384 (695)
T ss_dssp             SGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEET
T ss_pred             CccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCC
Confidence            52  1233323  4568889998 77888899999988888664 4665555543  4557788999999988876654 


Q ss_pred             ---CeEEEEEe
Q 008496          554 ---HTVCVLDF  561 (563)
Q Consensus       554 ---~~v~v~~~  561 (563)
                         +++.+||+
T Consensus       385 ~~P~~v~~~d~  395 (695)
T 2bkl_A          385 TTPRQIYKTSV  395 (695)
T ss_dssp             TEEEEEEEEET
T ss_pred             CCCCEEEEEEC
Confidence               46777775

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.60  E-value=9.9e-13  Score=127.89  Aligned_cols=239  Identities=9%  Similarity=0.105  Sum_probs=163.2

Q ss_pred             CCeEEEEECCCCCEEEE-------EeCCCeEEEEEcCCceeEeecc-----CCCCEEEEEeCCC-CCEEEEeeCCCcEEE
Q 008496          275 KDVTTLDWNGEGTLLAT-------GSYDGQARIWSTNGDLKCTLSK-----HKGPIFSLKWNKK-GDYLLTGSCDKTAIV  341 (563)
Q Consensus       275 ~~V~~l~~s~~g~~l~s-------g~~dg~i~vw~~~~~~~~~~~~-----h~~~V~~l~~~~~-~~~l~s~s~D~~v~i  341 (563)
                      ....+++|+++|.++++       +..++.|.+|+........+..     +...+.++.++++ |+.+++ +..+.|.+
T Consensus        18 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~-~~~~~l~~   96 (314)
T 1pjx_A           18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVA-DMRLGLLV   96 (314)
T ss_dssp             TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEE-ETTTEEEE
T ss_pred             CCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEE-ECCCCEEE
Confidence            34678999999998888       6778999999964333333322     5567899999999 654444 44457888


Q ss_pred             EECCCCceeEE-eeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCC-
Q 008496          342 WDVKTEEWKQQ-FEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDD-  419 (563)
Q Consensus       342 wd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~d-  419 (563)
                      ||.. ++.... ....                              .       ......+.+++++++|+++++...+ 
T Consensus        97 ~d~~-g~~~~~~~~~~------------------------------~-------~~~~~~~~~i~~d~~g~l~v~~~~~~  138 (314)
T 1pjx_A           97 VQTD-GTFEEIAKKDS------------------------------E-------GRRMQGCNDCAFDYEGNLWITAPAGE  138 (314)
T ss_dssp             EETT-SCEEECCSBCT------------------------------T-------SCBCBCCCEEEECTTSCEEEEECBCB
T ss_pred             EeCC-CCEEEEEeccC------------------------------C-------CccccCCcCEEECCCCCEEEEecCcc
Confidence            9877 543211 0000                              0       0012347789999999988777655 


Q ss_pred             --------------CcEEEEeCCCCceeeeecccCCCEEEEEEc----cCCCCCCCCCCcEEEEEEeCCCeEEEEeCC-C
Q 008496          420 --------------VTAKIWNMKQDKYVHDLREHSKEIYTIRWS----PTGSGTNNPNQQLILASASFDSTVKLWDVE-L  480 (563)
Q Consensus       420 --------------g~i~iwd~~~~~~~~~~~~~~~~i~~~~~~----p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~-~  480 (563)
                                    +.|..|+.. ++.. .+..+......++|+    |++.        .++++...++.|.+||+. .
T Consensus       139 ~~~~~~~~~~~~~~~~l~~~~~~-g~~~-~~~~~~~~~~~i~~~~~~d~dg~--------~l~v~~~~~~~i~~~~~~~~  208 (314)
T 1pjx_A          139 VAPADYTRSMQEKFGSIYCFTTD-GQMI-QVDTAFQFPNGIAVRHMNDGRPY--------QLIVAETPTKKLWSYDIKGP  208 (314)
T ss_dssp             CTTSCCCBTTSSSCEEEEEECTT-SCEE-EEEEEESSEEEEEEEECTTSCEE--------EEEEEETTTTEEEEEEEEET
T ss_pred             cccccccccccCCCCeEEEECCC-CCEE-EeccCCCCcceEEEecccCCCCC--------EEEEEECCCCeEEEEECCCC
Confidence                          566667655 4332 222333456788898    7653        345566678999999976 4


Q ss_pred             Ce-----EEEEecCCC-CCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEecC-CCEEEEEEcCCCCEEEEE-EC
Q 008496          481 GK-----LLYSLNGHR-EPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGN-GGIFEVCWNKEGDKIAAC-FA  552 (563)
Q Consensus       481 ~~-----~~~~~~~h~-~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~~-~~i~~l~w~~~g~~la~~-~~  552 (563)
                      ++     ....+..+. ..+..++++++|+++++...++.|.+|+..+++.+..+... ..+.+++++++|+.|.++ ..
T Consensus       209 g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~  288 (314)
T 1pjx_A          209 AKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHE  288 (314)
T ss_dssp             TEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETT
T ss_pred             CccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCC
Confidence            54     233344443 55789999999999988888899999999877776666544 568999999999966655 44


Q ss_pred             CCeEEEEEee
Q 008496          553 NHTVCVLDFR  562 (563)
Q Consensus       553 ~~~v~v~~~~  562 (563)
                      ++.|.+|++.
T Consensus       289 ~~~l~~~~~~  298 (314)
T 1pjx_A          289 NNAVWKFEWQ  298 (314)
T ss_dssp             TTEEEEEECS
T ss_pred             CCeEEEEeCC
Confidence            5788888753

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.60  E-value=2.5e-13  Score=148.59  Aligned_cols=236  Identities=15%  Similarity=0.109  Sum_probs=156.7

Q ss_pred             CCCCEEEEEeCCCCCEEEEeeCC-----CcEEEEECCCCceeEEeeecccCeEEEecCCCceEEEEeCCC----------
Q 008496          314 HKGPIFSLKWNKKGDYLLTGSCD-----KTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDN----------  378 (563)
Q Consensus       314 h~~~V~~l~~~~~~~~l~s~s~D-----~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~----------  378 (563)
                      |...+.+++|||+|++|+.++.+     .+|++||+.+++.... .........+.|.++..|+.++.+.          
T Consensus       161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~-~~~~~~~~~~~wspD~~l~~~~~~~~~~~~~~~~~  239 (741)
T 1yr2_A          161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD-ELKWVKFSGLAWLGNDALLYSRFAEPKEGQAFQAL  239 (741)
T ss_dssp             --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE-EEEEEESCCCEESTTSEEEEEECCCC--------C
T ss_pred             CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc-cCCCceeccEEEECCCEEEEEEecCcccccccccC
Confidence            33468899999999999876654     4699999999987553 1111122467787665566655443          


Q ss_pred             ----eEEEEEcCCCcc--eeeecC--CCcceeEEEECCCCCEEEEEeCCC-----cEEEEeCCCC--ceeeeecccCCCE
Q 008496          379 ----MIYVCKIGENRP--IKTFAG--HQGEVNCVKWDPTGSLLASCSDDV-----TAKIWNMKQD--KYVHDLREHSKEI  443 (563)
Q Consensus       379 ----~i~~~~~~~~~~--~~~~~~--h~~~i~~~~~~~~~~~las~s~dg-----~i~iwd~~~~--~~~~~~~~~~~~i  443 (563)
                          .|++|++++...  ...+..  +...+..+.|+|||++|+..+.++     .|.+||+.++  .....+..+...+
T Consensus       240 ~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~  319 (741)
T 1yr2_A          240 NYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQ  319 (741)
T ss_dssp             CCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSC
T ss_pred             CCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCce
Confidence                388999877652  233333  334588999999999988777544     7999998776  3134455555445


Q ss_pred             EEEEEccCCCCCCCCCCcEEEEEEeC----CCeEEEEeCCCC--eEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEE
Q 008496          444 YTIRWSPTGSGTNNPNQQLILASASF----DSTVKLWDVELG--KLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHI  517 (563)
Q Consensus       444 ~~~~~~p~~~~~~~~~~~~~l~s~s~----dg~i~iwd~~~~--~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~i  517 (563)
                      ....+ |++.         .|+..+.    ++.|.+||+.++  .....+..+...+..++|+ ++.++++...|+..+|
T Consensus       320 ~~~~~-~dg~---------~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l  388 (741)
T 1yr2_A          320 WDFVD-GVGD---------QLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQV  388 (741)
T ss_dssp             EEEEE-EETT---------EEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEE
T ss_pred             EEEEe-ccCC---------EEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEE
Confidence            55433 6654         2333333    456999999874  3333344455556778887 6677888889998777


Q ss_pred             EecC-CCeeEEEEe--cCCCEEEEEEcCCCCEEEEEECC----CeEEEEEe
Q 008496          518 WSLK-EGKIVKTYT--GNGGIFEVCWNKEGDKIAACFAN----HTVCVLDF  561 (563)
Q Consensus       518 w~~~-~~~~~~~~~--~~~~i~~l~w~~~g~~la~~~~~----~~v~v~~~  561 (563)
                      |.+. +++.++.+.  ..+.+..++|+|+|+.|++.+.+    +++.+||+
T Consensus       389 ~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~  439 (741)
T 1yr2_A          389 LAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDP  439 (741)
T ss_dssp             EEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEET
T ss_pred             EEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEEC
Confidence            7654 466666655  34568899999999988866553    46777765

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.56  E-value=1.6e-12  Score=127.59  Aligned_cols=253  Identities=9%  Similarity=-0.011  Sum_probs=171.6

Q ss_pred             CCCeEEEEEcCCc-eeEeec------cCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEec-
Q 008496          294 YDGQARIWSTNGD-LKCTLS------KHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDW-  365 (563)
Q Consensus       294 ~dg~i~vw~~~~~-~~~~~~------~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~-  365 (563)
                      .++.|.++|.... ....+.      ........+.+. .++..++...+++|.+||..+++.+..+.. ......+.+ 
T Consensus        15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~~-~~~p~~i~~~   92 (328)
T 3dsm_A           15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRITG-FTSPRYIHFL   92 (328)
T ss_dssp             CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEEC-CSSEEEEEEE
T ss_pred             CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcCC-CCCCcEEEEe
Confidence            4789999998743 332221      122345677764 344555566679999999999998887743 334555666 


Q ss_pred             CCCceEEEEeCCCeEEEEEcCCCcceeeecCCC-----cceeEEEECCCCCEEEEEe-CCCcEEEEeCCCCceeeeeccc
Q 008496          366 RNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQ-----GEVNCVKWDPTGSLLASCS-DDVTAKIWNMKQDKYVHDLREH  439 (563)
Q Consensus       366 ~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~-----~~i~~~~~~~~~~~las~s-~dg~i~iwd~~~~~~~~~~~~~  439 (563)
                      .+...+++...++.|.+++..+.+....+....     .....+++ .+++++++.. .++.|.+||..+++.+..+...
T Consensus        93 ~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g  171 (328)
T 3dsm_A           93 SDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDELTIG  171 (328)
T ss_dssp             ETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEEEECS
T ss_pred             CCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcC
Confidence            444445555578999999998887666554322     14556777 4555555554 4889999999998877766543


Q ss_pred             CCCEEEEEEccCCCCCCCCCCcEEEEEEeCC----------CeEEEEeCCCCeEEEEecCC-CCCEEEEEEcCCCCEEEE
Q 008496          440 SKEIYTIRWSPTGSGTNNPNQQLILASASFD----------STVKLWDVELGKLLYSLNGH-REPVYSLAFSPTGEYLAS  508 (563)
Q Consensus       440 ~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~d----------g~i~iwd~~~~~~~~~~~~h-~~~i~~l~~spdg~~las  508 (563)
                      . ....+.++|+|.         +++++..+          +.|.++|..+++....+... ......++|+||+++|.+
T Consensus       172 ~-~p~~i~~~~dG~---------l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv  241 (328)
T 3dsm_A          172 I-QPTSLVMDKYNK---------MWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYW  241 (328)
T ss_dssp             S-CBCCCEECTTSE---------EEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEE
T ss_pred             C-CccceEEcCCCC---------EEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEE
Confidence            2 335667777653         44444443          78999999999887666432 235789999999998887


Q ss_pred             EeCCCcEEEEecCCCeeEEE--Eec-CCCEEEEEEcCC-CCEEEEE----ECCCeEEEEEe
Q 008496          509 GSLDKSMHIWSLKEGKIVKT--YTG-NGGIFEVCWNKE-GDKIAAC----FANHTVCVLDF  561 (563)
Q Consensus       509 gs~dg~v~iw~~~~~~~~~~--~~~-~~~i~~l~w~~~-g~~la~~----~~~~~v~v~~~  561 (563)
                      +..  .|.+||..++++...  ... ......++++|+ |...++.    ..++.|.+||.
T Consensus       242 ~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~  300 (328)
T 3dsm_A          242 INN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSP  300 (328)
T ss_dssp             ESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECT
T ss_pred             Ecc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECC
Confidence            665  899999998876421  111 345789999995 5555555    56788999875

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.56  E-value=1e-11  Score=130.08  Aligned_cols=267  Identities=13%  Similarity=0.110  Sum_probs=189.4

Q ss_pred             CCCCEEEEEeCCCeEEEEEcCC-ceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECC--CCceeEEeeecccCe
Q 008496          284 GEGTLLATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVK--TEEWKQQFEFHSGPT  360 (563)
Q Consensus       284 ~~g~~l~sg~~dg~i~vw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~--~~~~~~~~~~~~~~~  360 (563)
                      +.+.++++...++.|.++|... +...++.. ...+..+.|+|+|+++++++.|+.|.+||+.  +.+.+..+..... .
T Consensus       165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~-g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~-P  242 (567)
T 1qks_A          165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDT-GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSE-A  242 (567)
T ss_dssp             GGGEEEEEETTTTEEEEEETTTCCEEEEEEC-SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSE-E
T ss_pred             CCceEEEEeCCCCeEEEEECCCCeEEEEEeC-CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCC-C
Confidence            3456777778889999999864 45555543 3356789999999999999999999999996  7777766654333 3


Q ss_pred             EEEecC-----CC-ceEEEEeCCCeEEEEEcCCCcceeeecC----------CCc-ceeEEEECCCCCE-EEEEeCCCcE
Q 008496          361 LDVDWR-----NN-VSFATSSTDNMIYVCKIGENRPIKTFAG----------HQG-EVNCVKWDPTGSL-LASCSDDVTA  422 (563)
Q Consensus       361 ~~~~~~-----~~-~~~~~~~~d~~i~~~~~~~~~~~~~~~~----------h~~-~i~~~~~~~~~~~-las~s~dg~i  422 (563)
                      ..+.+.     +. ..+++...++.+.++|..+.+++..+..          |.. .+..+..++++.. +++...+|.|
T Consensus       243 ~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v  322 (567)
T 1qks_A          243 RSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKI  322 (567)
T ss_dssp             EEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEE
T ss_pred             ceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeE
Confidence            445554     33 4556667789999999988888776542          112 5778888888665 4556678999


Q ss_pred             EEEeCCCCcee--eeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecC-----CCCCEE
Q 008496          423 KIWNMKQDKYV--HDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNG-----HREPVY  495 (563)
Q Consensus       423 ~iwd~~~~~~~--~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-----h~~~i~  495 (563)
                      .++|.......  ..+ ........+.|+|+++        .+++++..++.|.++|+.+++.+..+.-     |.+.-.
T Consensus       323 ~~vd~~~~~~~~v~~i-~~~~~~~d~~~~pdgr--------~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~  393 (567)
T 1qks_A          323 LLVDYTDLNNLKTTEI-SAERFLHDGGLDGSHR--------YFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGA  393 (567)
T ss_dssp             EEEETTCSSEEEEEEE-ECCSSEEEEEECTTSC--------EEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCE
T ss_pred             EEEecCCCccceeeee-eccccccCceECCCCC--------EEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccce
Confidence            99998765322  122 2334566788999875        4566666789999999999998766543     322111


Q ss_pred             EEEEcCCC-CEEEEEe-CCCcEEEEecCC-------CeeEEEEecCC-CEEEEEEcCCCCEEEEEEC-------CCeEEE
Q 008496          496 SLAFSPTG-EYLASGS-LDKSMHIWSLKE-------GKIVKTYTGNG-GIFEVCWNKEGDKIAACFA-------NHTVCV  558 (563)
Q Consensus       496 ~l~~spdg-~~lasgs-~dg~v~iw~~~~-------~~~~~~~~~~~-~i~~l~w~~~g~~la~~~~-------~~~v~v  558 (563)
                      .+ ++|++ ..++++. .++.|.+++..+       .+.+++....+ +-..+..+|+|++|.+...       ..+|.|
T Consensus       394 ~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v  472 (567)
T 1qks_A          394 NF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAV  472 (567)
T ss_dssp             EE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEE
T ss_pred             ee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEE
Confidence            22 68884 5555554 468999999988       67888887643 3356788999999998763       348999


Q ss_pred             EEee
Q 008496          559 LDFR  562 (563)
Q Consensus       559 ~~~~  562 (563)
                      ||+.
T Consensus       473 ~d~~  476 (567)
T 1qks_A          473 FDIK  476 (567)
T ss_dssp             EEGG
T ss_pred             EECC
Confidence            9874

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.56  E-value=5.1e-11  Score=114.68  Aligned_cols=276  Identities=11%  Similarity=0.028  Sum_probs=186.7

Q ss_pred             CCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEEe
Q 008496          214 HTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGS  293 (563)
Q Consensus       214 h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~  293 (563)
                      ....+.++++.++|.++++...++.|.+|+.. +...           ... .    ......+..+++.++|.++++..
T Consensus        18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~-----------~~~-~----~~~~~~~~~i~~~~~g~l~v~~~   80 (300)
T 2qc5_A           18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIK-----------EFE-V----PTPDAKVMCLIVSSLGDIWFTEN   80 (300)
T ss_dssp             TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE-----------EEE-C----SSTTCCEEEEEECTTSCEEEEET
T ss_pred             CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceE-----------EEE-C----CCCCCcceeEEECCCCCEEEEec
Confidence            34567899999999988887788999999865 3210           000 0    11235688999999999888877


Q ss_pred             CCCeEEEEEcCCceeE-eeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEE-eeecccCeEEEecCC-Cce
Q 008496          294 YDGQARIWSTNGDLKC-TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQ-FEFHSGPTLDVDWRN-NVS  370 (563)
Q Consensus       294 ~dg~i~vw~~~~~~~~-~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~-~~~~~~~~~~~~~~~-~~~  370 (563)
                      .++.|..|+..+.... .+......+.++++.++|+.+++...++.|..||.. ++.... +......+..+.... ...
T Consensus        81 ~~~~v~~~d~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l  159 (300)
T 2qc5_A           81 GANKIGKLSKKGGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNAL  159 (300)
T ss_dssp             TTTEEEEECTTSCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSE
T ss_pred             CCCeEEEECCCCCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCE
Confidence            7899999998865532 222244678999999999988887778899999987 554422 111223455555543 334


Q ss_pred             EEEEeCCCeEEEEEcCCCccee-eecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceee-eecccCCCEEEEEE
Q 008496          371 FATSSTDNMIYVCKIGENRPIK-TFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVH-DLREHSKEIYTIRW  448 (563)
Q Consensus       371 ~~~~~~d~~i~~~~~~~~~~~~-~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~-~~~~~~~~i~~~~~  448 (563)
                      +++...++.|+.++. ...... ....+...+.+++++++|.+.++....+.|.+|+. ++.... .+..+...+.++++
T Consensus       160 ~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~  237 (300)
T 2qc5_A          160 WFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITA  237 (300)
T ss_dssp             EEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEE
T ss_pred             EEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEE
Confidence            555555778888887 333222 22234456889999999998887777788999998 444332 23334566888999


Q ss_pred             ccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEE-EEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q 008496          449 SPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLL-YSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLK  521 (563)
Q Consensus       449 ~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~-~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~  521 (563)
                      .+++.         +.++...++.|..||.. ++.. +.+......+.+++++++|.++++.. . .|..++..
T Consensus       238 d~~g~---------l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p~  299 (300)
T 2qc5_A          238 GKNSE---------IWFTEWGANQIGRITND-NTIQEYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKLNLN  299 (300)
T ss_dssp             CSTTC---------EEEEETTTTEEEEECTT-SCEEEEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEEEEC
T ss_pred             CCCCC---------EEEeccCCCeEEEECCC-CcEEEEECCccCCccceeEeCCCCCEEEEcc-C-ceEEeCCC
Confidence            88764         45555567899999984 5433 33443445678999999998776655 4 67777653

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.56  E-value=3.3e-11  Score=115.98  Aligned_cols=233  Identities=8%  Similarity=0.050  Sum_probs=169.1

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCeEEEEEcCCceeEe-eccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEe
Q 008496          275 KDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCT-LSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQF  353 (563)
Q Consensus       275 ~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~~~~-~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~  353 (563)
                      ..+.+++++++|+++++...++.|.+|+..+..... +..+...+.++++.++|..+++...++.|..||.. +.. ..+
T Consensus        15 ~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~-~~~   92 (299)
T 2z2n_A           15 TGPYGITVSDKGKVWITQHKANMISCINLDGKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GII-KEY   92 (299)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-EEE
T ss_pred             CCccceEECCCCCEEEEecCCCcEEEEcCCCCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcE-EEE
Confidence            568999999999988877778999999988544332 22345678999999999988887778889999865 221 111


Q ss_pred             eecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCcee
Q 008496          354 EFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYV  433 (563)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~  433 (563)
                                                    .+         ......+.++++++++.++++...++.|.+||. ++...
T Consensus        93 ------------------------------~~---------~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~  132 (299)
T 2z2n_A           93 ------------------------------TL---------PNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIR  132 (299)
T ss_dssp             ------------------------------EC---------SSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEE
T ss_pred             ------------------------------eC---------CCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEE
Confidence                                          00         112335678999999998888877889999998 44433


Q ss_pred             e-eecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEE-ecCCCCCEEEEEEcCCCCEEEEEeC
Q 008496          434 H-DLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYS-LNGHREPVYSLAFSPTGEYLASGSL  511 (563)
Q Consensus       434 ~-~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~-~~~h~~~i~~l~~spdg~~lasgs~  511 (563)
                      . .+..+...+..+++.+++.         +.++...++.|..||. +++.... +......+.+++++++|.++++...
T Consensus       133 ~~~~~~~~~~~~~i~~~~~g~---------l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~  202 (299)
T 2z2n_A          133 EYELPNKGSYPSFITLGSDNA---------LWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEII  202 (299)
T ss_dssp             EEECSSTTCCEEEEEECTTSC---------EEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETT
T ss_pred             EecCCCCCCCCceEEEcCCCC---------EEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccC
Confidence            2 2223445688899988764         5555666789999999 6665432 3334456889999999998887777


Q ss_pred             CCcEEEEecCCCeeEEEEec---CCCEEEEEEcCCCCEEEEEECCCeEEEEEe
Q 008496          512 DKSMHIWSLKEGKIVKTYTG---NGGIFEVCWNKEGDKIAACFANHTVCVLDF  561 (563)
Q Consensus       512 dg~v~iw~~~~~~~~~~~~~---~~~i~~l~w~~~g~~la~~~~~~~v~v~~~  561 (563)
                      ++.|.+|+. +++... +..   ...+..++++++|+..++...++.|.+||.
T Consensus       203 ~~~i~~~~~-~g~~~~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~  253 (299)
T 2z2n_A          203 GNKIGRITT-SGEITE-FKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS  253 (299)
T ss_dssp             TTEEEEECT-TCCEEE-EECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET
T ss_pred             CceEEEECC-CCcEEE-EECCCCCCCceeEEECCCCCEEEeccCCceEEEECC
Confidence            889999999 776543 322   356889999999997777667788888874

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.55  E-value=3.1e-11  Score=120.18  Aligned_cols=238  Identities=8%  Similarity=-0.079  Sum_probs=154.7

Q ss_pred             EEEECCCCCEEEEEe----------CCCeEEEEEcCC-ceeEeeccC-------CCCEEEEEeCCCCCEEEEeeC--CCc
Q 008496          279 TLDWNGEGTLLATGS----------YDGQARIWSTNG-DLKCTLSKH-------KGPIFSLKWNKKGDYLLTGSC--DKT  338 (563)
Q Consensus       279 ~l~~s~~g~~l~sg~----------~dg~i~vw~~~~-~~~~~~~~h-------~~~V~~l~~~~~~~~l~s~s~--D~~  338 (563)
                      .++++|||++++++.          .++.|.+||... .....+.--       ......+.|+|+|++|+.++.  +++
T Consensus        70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~  149 (373)
T 2mad_H           70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPA  149 (373)
T ss_pred             CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCe
Confidence            789999999999886          367899999853 333333211       122357899999999998874  578


Q ss_pred             EEEEECCCCceeEE-eeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeec-----CCCcc-eeEEEECCCCC
Q 008496          339 AIVWDVKTEEWKQQ-FEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFA-----GHQGE-VNCVKWDPTGS  411 (563)
Q Consensus       339 v~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~-----~h~~~-i~~~~~~~~~~  411 (563)
                      |.++| .+++.... +.... .+. +.......|++.+.|+.+.+++. ..+.+....     ..... .....+.+++.
T Consensus       150 v~viD-~t~~~~~~~i~~~~-~~~-~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~  225 (373)
T 2mad_H          150 VGLVV-QGGSSDDQLLSSPT-CYH-IHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSG  225 (373)
T ss_pred             EEEEE-CCCCEEeEEcCCCc-eEE-EEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCC
Confidence            99999 99988776 54322 122 22223346677778899988888 665542211     11111 12345566655


Q ss_pred             EEEEEeCCCcEEEEeCCCCc--eeeeecccCC----------CEEEEEEccCCCCCCCCCCcEEEEEEe---------CC
Q 008496          412 LLASCSDDVTAKIWNMKQDK--YVHDLREHSK----------EIYTIRWSPTGSGTNNPNQQLILASAS---------FD  470 (563)
Q Consensus       412 ~las~s~dg~i~iwd~~~~~--~~~~~~~~~~----------~i~~~~~~p~~~~~~~~~~~~~l~s~s---------~d  470 (563)
                      .++..+..+.+.+.|+.+..  .+..+.....          ....+.++|++.        .+.++..         ..
T Consensus       226 ~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~--------~lyV~~~~~~~~~~~~~~  297 (373)
T 2mad_H          226 RIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSD--------GIYLLTSEQSAWKLHAAA  297 (373)
T ss_pred             EEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCC--------EEEEEeccCCcccccCCC
Confidence            54444577889999986543  2222211111          122244455442        3333332         24


Q ss_pred             CeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCC-EEEEEe-CCCcEEEEecCCCeeEEEE
Q 008496          471 STVKLWDVELGKLLYSLNGHREPVYSLAFSPTGE-YLASGS-LDKSMHIWSLKEGKIVKTY  529 (563)
Q Consensus       471 g~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~-~lasgs-~dg~v~iw~~~~~~~~~~~  529 (563)
                      +.|.++|+.+++.+.++.. .....+++|+|||+ .++++. .++.|.+||+.+++++++.
T Consensus       298 ~~V~VID~~t~~vv~~i~~-g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i  357 (373)
T 2mad_H          298 KEVTSVTGLVGQTSSQISL-GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST  357 (373)
T ss_pred             CeEEEEECCCCEEEEEEEC-CCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence            6899999999999888853 33578999999999 777777 5899999999999999884

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.54  E-value=9.2e-12  Score=120.99  Aligned_cols=245  Identities=9%  Similarity=0.068  Sum_probs=159.2

Q ss_pred             cCCCCceEEEEECCCCCEEEE-------eeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECC
Q 008496          212 EGHTSEVCACAWSPAGSLLAS-------GSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG  284 (563)
Q Consensus       212 ~~h~~~V~~~~~sp~~~~lat-------gs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~  284 (563)
                      ........+++|++++.++++       +..++.|.+|+..++...           .+..  .........+..+++++
T Consensus        14 ~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~-----------~~~~--~~~~~~~~~~~~i~~~~   80 (314)
T 1pjx_A           14 TEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKT-----------VICK--PEVNGYGGIPAGCQCDR   80 (314)
T ss_dssp             ECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEE-----------EEEC--CEETTEECCEEEEEECS
T ss_pred             hccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEE-----------EEEe--cccCCCCCCCceEEEec
Confidence            334455689999999998888       678899999997654321           0100  00001124588999999


Q ss_pred             C-CCEEEEEeCCCeEEEEEcCCceeEe-ecc----CCCCEEEEEeCCCCCEEEEeeCC---------------CcEEEEE
Q 008496          285 E-GTLLATGSYDGQARIWSTNGDLKCT-LSK----HKGPIFSLKWNKKGDYLLTGSCD---------------KTAIVWD  343 (563)
Q Consensus       285 ~-g~~l~sg~~dg~i~vw~~~~~~~~~-~~~----h~~~V~~l~~~~~~~~l~s~s~D---------------~~v~iwd  343 (563)
                      + |+++++.. .+.|.+|+.++..... ...    ....+.+++++++|+.+++...+               +.|..||
T Consensus        81 ~~g~l~v~~~-~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~  159 (314)
T 1pjx_A           81 DANQLFVADM-RLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFT  159 (314)
T ss_dssp             SSSEEEEEET-TTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEEC
T ss_pred             CCCcEEEEEC-CCCEEEEeCCCCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEEC
Confidence            9 76555544 4478899988554332 211    12347899999999877776554               2344443


Q ss_pred             CCCCceeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEEC----CCCCEE-EEEeC
Q 008496          344 VKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWD----PTGSLL-ASCSD  418 (563)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~----~~~~~l-as~s~  418 (563)
                      .. ++..                                          .+..+......++|+    |+++.| ++.+.
T Consensus       160 ~~-g~~~------------------------------------------~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~  196 (314)
T 1pjx_A          160 TD-GQMI------------------------------------------QVDTAFQFPNGIAVRHMNDGRPYQLIVAETP  196 (314)
T ss_dssp             TT-SCEE------------------------------------------EEEEEESSEEEEEEEECTTSCEEEEEEEETT
T ss_pred             CC-CCEE------------------------------------------EeccCCCCcceEEEecccCCCCCEEEEEECC
Confidence            32 2111                                          111112235678899    998654 55566


Q ss_pred             CCcEEEEeCC-CCc-----eeeeecccC-CCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCC
Q 008496          419 DVTAKIWNMK-QDK-----YVHDLREHS-KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHR  491 (563)
Q Consensus       419 dg~i~iwd~~-~~~-----~~~~~~~~~-~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~  491 (563)
                      ++.|.+|+.. .+.     ....+..+. .....++++++|.         ++++...++.|.+||..+++.+..+..+.
T Consensus       197 ~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~---------l~v~~~~~~~i~~~d~~~g~~~~~~~~~~  267 (314)
T 1pjx_A          197 TKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNN---------LLVANWGSSHIEVFGPDGGQPKMRIRCPF  267 (314)
T ss_dssp             TTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCC---------EEEEEETTTEEEEECTTCBSCSEEEECSS
T ss_pred             CCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCC---------EEEEEcCCCEEEEEcCCCCcEeEEEeCCC
Confidence            8899999976 333     222333333 5577889988774         56666678899999998777666666666


Q ss_pred             CCEEEEEEcCCCCEEE-EEeCCCcEEEEecCC
Q 008496          492 EPVYSLAFSPTGEYLA-SGSLDKSMHIWSLKE  522 (563)
Q Consensus       492 ~~i~~l~~spdg~~la-sgs~dg~v~iw~~~~  522 (563)
                      ..+.+++|+|+|++|. +...++.|..|++..
T Consensus       268 ~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~  299 (314)
T 1pjx_A          268 EKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             SCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             CCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence            7799999999999554 455568899999864

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.54  E-value=3.5e-12  Score=125.42  Aligned_cols=291  Identities=12%  Similarity=0.083  Sum_probs=187.1

Q ss_pred             ECCCCCEEEEeeC-----CCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEEe----
Q 008496          223 WSPAGSLLASGSG-----DSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGS----  293 (563)
Q Consensus       223 ~sp~~~~latgs~-----D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~----  293 (563)
                      ..|+++.++....     ++.+.+.|..+.+.             +..+..    ...+ . ++++|||++++++.    
T Consensus        40 ~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v-------------~~~I~v----G~~P-~-va~spDG~~lyVan~~~~  100 (386)
T 3sjl_D           40 PAPDARRVYVNDPAHFAAVTQQFVIDGEAGRV-------------IGMIDG----GFLP-N-PVVADDGSFIAHASTVFS  100 (386)
T ss_dssp             CCCCTTEEEEEECGGGCSSEEEEEEETTTTEE-------------EEEEEE----CSSC-E-EEECTTSSCEEEEEEEEE
T ss_pred             cCCCCCEEEEEcCcccCCCCEEEEEECCCCeE-------------EEEEEC----CCCC-c-EEECCCCCEEEEEccccc
Confidence            3577776665543     67888998765432             111111    1122 3 89999999887775    


Q ss_pred             ------CCCeEEEEEcCC-ceeEeeccC-------CCCEEEEEeCCCCCEEEEeeC--CCcEEEEECCCCceeEEeeecc
Q 008496          294 ------YDGQARIWSTNG-DLKCTLSKH-------KGPIFSLKWNKKGDYLLTGSC--DKTAIVWDVKTEEWKQQFEFHS  357 (563)
Q Consensus       294 ------~dg~i~vw~~~~-~~~~~~~~h-------~~~V~~l~~~~~~~~l~s~s~--D~~v~iwd~~~~~~~~~~~~~~  357 (563)
                            .++.|.+||... .....+.-.       ......+.|+|+|++++.+..  +++|.++|+.+++.+..+....
T Consensus       101 r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g  180 (386)
T 3sjl_D          101 RIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD  180 (386)
T ss_dssp             ETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS
T ss_pred             ccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC
Confidence                  367899999764 334443211       113356899999999988764  6899999999999888775422


Q ss_pred             cCeEEEecCCCceEEEEeCCCeEEEEEcCC-CcceeeecCC----Ccce-eEEEE-CCCCCEEEEEeCCCcEEEEeCCCC
Q 008496          358 GPTLDVDWRNNVSFATSSTDNMIYVCKIGE-NRPIKTFAGH----QGEV-NCVKW-DPTGSLLASCSDDVTAKIWNMKQD  430 (563)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~-~~~~~~~~~h----~~~i-~~~~~-~~~~~~las~s~dg~i~iwd~~~~  430 (563)
                      .  ..+.......|++.+.||.+.+.++.. ++.+.....+    ...+ ....| .++|++++ .+.+|.+.+.|+.+.
T Consensus       181 ~--~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~  257 (386)
T 3sjl_D          181 C--YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSG  257 (386)
T ss_dssp             E--EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTS
T ss_pred             c--ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCC
Confidence            1  112223445677778899988888876 4432221111    1122 22455 36776554 566899999998765


Q ss_pred             ce--eeeec--c--------cCCCEEEEEEccCCCCCCCCCCcEEEEEEeC--------CCeEEEEeCCCCeEEEEecCC
Q 008496          431 KY--VHDLR--E--------HSKEIYTIRWSPTGSGTNNPNQQLILASASF--------DSTVKLWDVELGKLLYSLNGH  490 (563)
Q Consensus       431 ~~--~~~~~--~--------~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~--------dg~i~iwd~~~~~~~~~~~~h  490 (563)
                      ..  +..+.  .        .......++++|++.       .++++....        .+.|.+.|+.+++.+..+.- 
T Consensus       258 ~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~-------~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~v-  329 (386)
T 3sjl_D          258 DAKFLPAVEALTEAERADGWRPGGWQQVAYHRALD-------RIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM-  329 (386)
T ss_dssp             SCEECCCEESSCHHHHHTTEEECSSSCEEEETTTT-------EEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE-
T ss_pred             cceeecceeccccccccccccCCCcceeeECCCCC-------eEEEEeccccccccCCCCCEEEEEECCCCeEEEEEEC-
Confidence            42  22211  0        011112234445442       334433311        25799999999999887753 


Q ss_pred             CCCEEEEEEcCCCC-EEEEE-eCCCcEEEEecCCCeeEEEEecCCCEEEEEEcCC
Q 008496          491 REPVYSLAFSPTGE-YLASG-SLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKE  543 (563)
Q Consensus       491 ~~~i~~l~~spdg~-~lasg-s~dg~v~iw~~~~~~~~~~~~~~~~i~~l~w~~~  543 (563)
                      ..++++|+|+||++ +|++. ..++.|.++|..++++++++...+....|.+++|
T Consensus       330 g~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~~~p~~l~~s~d  384 (386)
T 3sjl_D          330 GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTAD  384 (386)
T ss_dssp             EEEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCSSCCEEEECC
T ss_pred             CCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecCCCCCceeEECCc
Confidence            23678999999996 66654 4589999999999999999988777778888877

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.52  E-value=2e-11  Score=117.79  Aligned_cols=228  Identities=14%  Similarity=0.206  Sum_probs=156.9

Q ss_pred             eEEEEECCC-CCEEEEEeCCCeEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeee
Q 008496          277 VTTLDWNGE-GTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEF  355 (563)
Q Consensus       277 V~~l~~s~~-g~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~  355 (563)
                      --+..|+++ +.++++...++.|..|+..+.....+ .+...+.+++++++|+++++ . ++.|.+||..+++...... 
T Consensus        15 ~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~-~~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~~~~~~-   90 (297)
T 3g4e_A           15 GESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQRV-TMDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQSAVVLAT-   90 (297)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEE-ECSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEEEEEEE-
T ss_pred             ccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEEE-eCCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCcEEEEEe-
Confidence            457789995 55667777789999999876544433 34567999999999995554 3 5689999988765322110 


Q ss_pred             cccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCC---------CcEEEEe
Q 008496          356 HSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDD---------VTAKIWN  426 (563)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~d---------g~i~iwd  426 (563)
                                                   .....       ....++.++++|+|+++++....         ....||.
T Consensus        91 -----------------------------~~~~~-------~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~  134 (297)
T 3g4e_A           91 -----------------------------VDNDK-------KNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYS  134 (297)
T ss_dssp             -----------------------------CCTTC-------SSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEE
T ss_pred             -----------------------------cCCCC-------CCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEE
Confidence                                         00000       12346788999999977654321         2345555


Q ss_pred             CCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeC--CCCeE-----EEEecCCCCCEEEEEE
Q 008496          427 MKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDV--ELGKL-----LYSLNGHREPVYSLAF  499 (563)
Q Consensus       427 ~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~--~~~~~-----~~~~~~h~~~i~~l~~  499 (563)
                      +.....+..+..+......++|+|++.        .++++.+.++.|.+|++  .++..     ...+..+......+++
T Consensus       135 ~d~~g~~~~~~~~~~~pngi~~spdg~--------~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~  206 (297)
T 3g4e_A          135 LFPDHHVKKYFDQVDISNGLDWSLDHK--------IFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCI  206 (297)
T ss_dssp             ECTTSCEEEEEEEESBEEEEEECTTSC--------EEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEE
T ss_pred             EECCCCEEEEeeccccccceEEcCCCC--------EEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEE
Confidence            543322222333334567899999875        35566777899999987  45543     2233333456789999


Q ss_pred             cCCCCEEEEEeCCCcEEEEecCCCeeEEEEecC-CCEEEEEEc-CCCCEEEEEEC
Q 008496          500 SPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGN-GGIFEVCWN-KEGDKIAACFA  552 (563)
Q Consensus       500 spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~~-~~i~~l~w~-~~g~~la~~~~  552 (563)
                      +++|++.++....+.|.+||..+|+++..+... ..+++++|. |+++.|.++..
T Consensus       207 d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~~  261 (297)
T 3g4e_A          207 DAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTTSCCFGGKNYSEMYVTCA  261 (297)
T ss_dssp             BTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSBEEEEEEESGGGCEEEEEEB
T ss_pred             CCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCCceEEEEeCCCCCEEEEEcC
Confidence            999998888888889999999999998888765 578999998 89998877654

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.51  E-value=2.3e-12  Score=140.98  Aligned_cols=238  Identities=13%  Similarity=0.069  Sum_probs=157.9

Q ss_pred             CeEEEEECCCCCEEEEEeCC-----CeEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCc------------
Q 008496          276 DVTTLDWNGEGTLLATGSYD-----GQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKT------------  338 (563)
Q Consensus       276 ~V~~l~~s~~g~~l~sg~~d-----g~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~------------  338 (563)
                      .+..++|||||++|+.++.+     ..|++||+.+........+...+..+.|+|+ +.|+.++.|+.            
T Consensus       164 ~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~  242 (741)
T 1yr2_A          164 ALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYN  242 (741)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEEEEEESCCCEESTT-SEEEEEECCCC--------CCCC
T ss_pred             EEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccCCCceeccEEEECC-CEEEEEEecCcccccccccCCCC
Confidence            57889999999999987654     3699999876543332222222357899999 99988877654            


Q ss_pred             --EEEEECCCCce--eEEeeeccc--CeEEEecCCCce-EEEEeC-----CCeEEEEEcCCC--cceeeecCCCcceeEE
Q 008496          339 --AIVWDVKTEEW--KQQFEFHSG--PTLDVDWRNNVS-FATSST-----DNMIYVCKIGEN--RPIKTFAGHQGEVNCV  404 (563)
Q Consensus       339 --v~iwd~~~~~~--~~~~~~~~~--~~~~~~~~~~~~-~~~~~~-----d~~i~~~~~~~~--~~~~~~~~h~~~i~~~  404 (563)
                        |++|++.++..  ...+.....  .+..+.|..+.. ++..+.     ...|+++++...  .+...+..+...+...
T Consensus       243 ~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~  322 (741)
T 1yr2_A          243 QTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDF  322 (741)
T ss_dssp             CEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEE
T ss_pred             CEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEE
Confidence              88999877653  222322222  356777876653 444332     347999998765  3144555555545444


Q ss_pred             EECCCCCEEEEEeCC----CcEEEEeCCCC--ceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeC
Q 008496          405 KWDPTGSLLASCSDD----VTAKIWNMKQD--KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDV  478 (563)
Q Consensus       405 ~~~~~~~~las~s~d----g~i~iwd~~~~--~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~  478 (563)
                      . +|+|+.|+..+++    +.|.+||+.+.  .....+..+...+..+.|.. +         .++++...|+..+||.+
T Consensus       323 ~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~~-~---------~lv~~~~~dg~~~l~~~  391 (741)
T 1yr2_A          323 V-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIAG-N---------RLFASYIHDAKSQVLAF  391 (741)
T ss_dssp             E-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEEB-T---------EEEEEEEETTEEEEEEE
T ss_pred             E-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEEC-C---------EEEEEEEECCEEEEEEE
Confidence            3 4899988887764    45999998874  33333334444566677752 2         37888889998888755


Q ss_pred             C-CCeEEEEecC-CCCCEEEEEEcCCCCEEEE-E---eCCCcEEEEecCCCee
Q 008496          479 E-LGKLLYSLNG-HREPVYSLAFSPTGEYLAS-G---SLDKSMHIWSLKEGKI  525 (563)
Q Consensus       479 ~-~~~~~~~~~~-h~~~i~~l~~spdg~~las-g---s~dg~v~iw~~~~~~~  525 (563)
                      . .++.+..+.. +...|..++++|++..|+. .   ...++|++||+.+++.
T Consensus       392 ~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~  444 (741)
T 1yr2_A          392 DLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKT  444 (741)
T ss_dssp             ETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEE
T ss_pred             eCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence            4 4666666654 3567889999999976652 2   2347899999988763

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.50  E-value=1.6e-10  Score=114.90  Aligned_cols=263  Identities=8%  Similarity=-0.010  Sum_probs=170.1

Q ss_pred             CCCCCEEEEEeC--CC---eEEEEEcC-CceeEeeccCCCCEEEEEeCCCCCEEEEee----------CCCcEEEEECCC
Q 008496          283 NGEGTLLATGSY--DG---QARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGS----------CDKTAIVWDVKT  346 (563)
Q Consensus       283 s~~g~~l~sg~~--dg---~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s----------~D~~v~iwd~~~  346 (563)
                      .|+++++.+...  ..   .|.++|.. ++....+..-..+  .+.++|+|++++.+.          .+++|.+||+.+
T Consensus        29 ~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t  106 (373)
T 2mad_H           29 GADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVT  106 (373)
T ss_pred             CCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCC
Confidence            356666666543  22   78999975 4555555544444  899999999998876          367899999998


Q ss_pred             CceeEEeeec-------ccCeEEEecCCCc-eE-EEEeC-CCeEEEEEcCCCcceee-ecCCCcceeEEEECCCC-CEEE
Q 008496          347 EEWKQQFEFH-------SGPTLDVDWRNNV-SF-ATSST-DNMIYVCKIGENRPIKT-FAGHQGEVNCVKWDPTG-SLLA  414 (563)
Q Consensus       347 ~~~~~~~~~~-------~~~~~~~~~~~~~-~~-~~~~~-d~~i~~~~~~~~~~~~~-~~~h~~~i~~~~~~~~~-~~la  414 (563)
                      .+.+..+...       ......+.|.++. .+ ++... ++.|.++| .+.+.+.. +... +   |+.+.|++ +.++
T Consensus       107 ~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~-~---~~~~~~~~~~~~~  181 (373)
T 2mad_H          107 FLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSP-T---CYHIHPGAPSTFY  181 (373)
T ss_pred             CcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCC-c---eEEEEeCCCceEE
Confidence            8877766543       1122345555443 33 33333 57899999 88877766 5321 1   24455555 4566


Q ss_pred             EEeCCCcEEEEeCCCCceeeeec-----ccCCCE-EEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCe--EEEE
Q 008496          415 SCSDDVTAKIWNMKQDKYVHDLR-----EHSKEI-YTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK--LLYS  486 (563)
Q Consensus       415 s~s~dg~i~iwd~~~~~~~~~~~-----~~~~~i-~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~--~~~~  486 (563)
                      +.+.||.+.++|. +++.+....     ....++ ....+.+++.       . +++. +..+.|.+.|+..+.  .+..
T Consensus       182 ~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~-------~-~~~~-~~~~~v~vid~~~~~~~v~~~  251 (373)
T 2mad_H          182 LLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSG-------R-IVWP-VYSGKILQADISAAGATNKAP  251 (373)
T ss_pred             EEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCC-------E-EEEE-cCCceEEEEeccCCcceEeee
Confidence            7778999999999 776553221     111111 1123333321       1 2333 367889999987543  2222


Q ss_pred             ecC----------CCCCEEEEEEcCCCCEEEEEeC----------CCcEEEEecCCCeeEEEEecCCCEEEEEEcCCCC-
Q 008496          487 LNG----------HREPVYSLAFSPTGEYLASGSL----------DKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGD-  545 (563)
Q Consensus       487 ~~~----------h~~~i~~l~~spdg~~lasgs~----------dg~v~iw~~~~~~~~~~~~~~~~i~~l~w~~~g~-  545 (563)
                      +.-          .......++|+||++.|.++..          .+.|.++|+.++++++++........++|+|||+ 
T Consensus       252 ~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~~p~~i~~s~Dg~~  331 (373)
T 2mad_H          252 IDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDGGP  331 (373)
T ss_pred             eeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCCCcCeEEECCCCCe
Confidence            210          0122445789999987776543          3579999999999999998777789999999999 


Q ss_pred             EEEEEE-CCCeEEEEEee
Q 008496          546 KIAACF-ANHTVCVLDFR  562 (563)
Q Consensus       546 ~la~~~-~~~~v~v~~~~  562 (563)
                      +|.++. .++.|.|||.+
T Consensus       332 ~l~v~~~~~~~V~ViD~~  349 (373)
T 2mad_H          332 DLYALSAGTEVLHIYDAG  349 (373)
T ss_pred             EEEEEcCCCCeEEEEECC
Confidence            677765 58899999975

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.46  E-value=1.2e-10  Score=114.00  Aligned_cols=225  Identities=11%  Similarity=0.045  Sum_probs=151.4

Q ss_pred             eEEEEECCC-CCEEEEEeCCCeEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeee
Q 008496          277 VTTLDWNGE-GTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEF  355 (563)
Q Consensus       277 V~~l~~s~~-g~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~  355 (563)
                      .....|+|+ +.++++...++.|..|+..+.....+. +...+.++.|+++|+++++. . ..|.+||..+++...... 
T Consensus        51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~-~~~~v~~i~~~~dg~l~v~~-~-~gl~~~d~~~g~~~~~~~-  126 (326)
T 2ghs_A           51 GEGPTFDPASGTAWWFNILERELHELHLASGRKTVHA-LPFMGSALAKISDSKQLIAS-D-DGLFLRDTATGVLTLHAE-  126 (326)
T ss_dssp             EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEEE-CSSCEEEEEEEETTEEEEEE-T-TEEEEEETTTCCEEEEEC-
T ss_pred             CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEEEE-CCCcceEEEEeCCCeEEEEE-C-CCEEEEECCCCcEEEEee-
Confidence            456789997 456667777899999998765544433 35679999999999877654 3 458889987765322100 


Q ss_pred             cccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeC------CCcEEEEeCCC
Q 008496          356 HSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD------DVTAKIWNMKQ  429 (563)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~------dg~i~iwd~~~  429 (563)
                                                   ....       .....++.++++|+|+++++...      .+.|..++  +
T Consensus       127 -----------------------------~~~~-------~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~  168 (326)
T 2ghs_A          127 -----------------------------LESD-------LPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--K  168 (326)
T ss_dssp             -----------------------------SSTT-------CTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--T
T ss_pred             -----------------------------CCCC-------CCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--C
Confidence                                         0000       01235778999999998776542      23454455  3


Q ss_pred             CceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCC--CC-e-----EEEEecCCCCCEEEEEEcC
Q 008496          430 DKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVE--LG-K-----LLYSLNGHREPVYSLAFSP  501 (563)
Q Consensus       430 ~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~--~~-~-----~~~~~~~h~~~i~~l~~sp  501 (563)
                      ++. ..+..+......++|+|++.        .+.++.+.++.|.+||+.  ++ .     ....+.........+++++
T Consensus       169 g~~-~~~~~~~~~~~~i~~s~dg~--------~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~  239 (326)
T 2ghs_A          169 GKV-TKLFADISIPNSICFSPDGT--------TGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDA  239 (326)
T ss_dssp             TEE-EEEEEEESSEEEEEECTTSC--------EEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECT
T ss_pred             CcE-EEeeCCCcccCCeEEcCCCC--------EEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECC
Confidence            433 23333334567899999875        244556667899999985  55 2     2333433445578899999


Q ss_pred             CCCEEEEEeCCCcEEEEecCCCeeEEEEecCC-CEEEEEEc-CCCCEEEEEECC
Q 008496          502 TGEYLASGSLDKSMHIWSLKEGKIVKTYTGNG-GIFEVCWN-KEGDKIAACFAN  553 (563)
Q Consensus       502 dg~~lasgs~dg~v~iw~~~~~~~~~~~~~~~-~i~~l~w~-~~g~~la~~~~~  553 (563)
                      +|.+.++...++.|.+|+. +++.+..+.... .+.+++|+ ++++.|.++...
T Consensus       240 ~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~af~g~d~~~L~vt~~~  292 (326)
T 2ghs_A          240 EGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASRLLVTSAR  292 (326)
T ss_dssp             TSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSCEEEEEEBC
T ss_pred             CCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEEEEecCCCCEEEEEecC
Confidence            9998887777788999998 677777776543 58999998 899888766544

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.45  E-value=1.1e-10  Score=117.86  Aligned_cols=233  Identities=12%  Similarity=0.075  Sum_probs=158.8

Q ss_pred             CCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecCCCc-eEEEEeCCC--eEEEEEcCCCccee
Q 008496          316 GPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNV-SFATSSTDN--MIYVCKIGENRPIK  392 (563)
Q Consensus       316 ~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~--~i~~~~~~~~~~~~  392 (563)
                      .....|+|+++++.+++...++.|++||+.++...........+.  +.|..+. .++.+..++  .|++++........
T Consensus       131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~~--ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~  208 (409)
T 3hrp_A          131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGK--PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPT  208 (409)
T ss_dssp             CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCBCB--CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEE
T ss_pred             CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCCCc--eeEecCCCcEEEEecCCCceEEEEEcCCCceeE
Confidence            357899999999877777778999999998877655443322222  5554433 344444433  78888876554333


Q ss_pred             ee----cCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeee----ecccCCCE-E-EEEEccCCCCCCCCCCcE
Q 008496          393 TF----AGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHD----LREHSKEI-Y-TIRWSPTGSGTNNPNQQL  462 (563)
Q Consensus       393 ~~----~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~----~~~~~~~i-~-~~~~~p~~~~~~~~~~~~  462 (563)
                      .+    ......+.+++++|++..|..+..++.|+.||..++.....    ...+.... . .++|+|++.        .
T Consensus       209 ~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g--------~  280 (409)
T 3hrp_A          209 RIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDS--------N  280 (409)
T ss_dssp             EEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTT--------E
T ss_pred             EeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCC--------E
Confidence            33    22445678999999544444577788999999887653221    11222222 2 888988532        3


Q ss_pred             EEEEEeCCCeEEEEeCCCCeEEEEecCCC---------------CCEEEEEEcCCCCEEEEEe-CCCcEEEEecCCCeeE
Q 008496          463 ILASASFDSTVKLWDVELGKLLYSLNGHR---------------EPVYSLAFSPTGEYLASGS-LDKSMHIWSLKEGKIV  526 (563)
Q Consensus       463 ~l~s~s~dg~i~iwd~~~~~~~~~~~~h~---------------~~i~~l~~spdg~~lasgs-~dg~v~iw~~~~~~~~  526 (563)
                      ++++-..++.|+.|+....  +..+.++.               .....++|+|+|+++++-+ .+++|+.|++.+|.+.
T Consensus       281 lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~  358 (409)
T 3hrp_A          281 FYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVS  358 (409)
T ss_dssp             EEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEE
T ss_pred             EEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEE
Confidence            6667778899999997643  22332221               3468999999999888887 8899999998888754


Q ss_pred             EEEecC----------------CCEEEEEEcCCCCEEEEEECCCeEEEEEe
Q 008496          527 KTYTGN----------------GGIFEVCWNKEGDKIAACFANHTVCVLDF  561 (563)
Q Consensus       527 ~~~~~~----------------~~i~~l~w~~~g~~la~~~~~~~v~v~~~  561 (563)
                       ++.+.                .....++++++|..+++-..+++|..+.+
T Consensus       359 -~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          359 -TVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             -EEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred             -EEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence             33322                24789999999988888888999988875

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.44  E-value=7.7e-11  Score=118.96  Aligned_cols=233  Identities=11%  Similarity=0.060  Sum_probs=158.5

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCeEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEEEeeCCC--cEEEEECCCCceeEE
Q 008496          275 KDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDK--TAIVWDVKTEEWKQQ  352 (563)
Q Consensus       275 ~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~--~v~iwd~~~~~~~~~  352 (563)
                      .....|+|+++|+++++...++.|++|+..+.....+........ ++|+++++.|++++.++  .|.+|+...+.....
T Consensus       131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~  209 (409)
T 3hrp_A          131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTR  209 (409)
T ss_dssp             CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEE
T ss_pred             CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeEE
Confidence            457899999999988888888999999998654444332222233 89999999999888866  788888766544333


Q ss_pred             ee---e-cccCeEEEecCC-CceEEEEeCCCeEEEEEcCCCcceee----ecCCCcce--eEEEECCC-CCEEEEEeCCC
Q 008496          353 FE---F-HSGPTLDVDWRN-NVSFATSSTDNMIYVCKIGENRPIKT----FAGHQGEV--NCVKWDPT-GSLLASCSDDV  420 (563)
Q Consensus       353 ~~---~-~~~~~~~~~~~~-~~~~~~~~~d~~i~~~~~~~~~~~~~----~~~h~~~i--~~~~~~~~-~~~las~s~dg  420 (563)
                      +.   . ....+..+.+.. +..+..+..++.|+.|+.........    ..++.+.-  +.++|+|+ +.++++-+.++
T Consensus       210 ~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~  289 (409)
T 3hrp_A          210 IGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLS  289 (409)
T ss_dssp             EEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTT
T ss_pred             eeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCC
Confidence            30   1 122233444444 44444466678899999876543222    22222222  38999995 67777777789


Q ss_pred             cEEEEeCCCCceeeeecccC---------------CCEEEEEEccCCCCCCCCCCcEEEEEEe-CCCeEEEEeCCCCeEE
Q 008496          421 TAKIWNMKQDKYVHDLREHS---------------KEIYTIRWSPTGSGTNNPNQQLILASAS-FDSTVKLWDVELGKLL  484 (563)
Q Consensus       421 ~i~iwd~~~~~~~~~~~~~~---------------~~i~~~~~~p~~~~~~~~~~~~~l~s~s-~dg~i~iwd~~~~~~~  484 (563)
                      .|+.|+....  +..+.++.               .....++++|+|.         ++++-+ .++.|+.|++.++...
T Consensus       290 ~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~---------lyvad~~~~~~I~~~~~~~G~v~  358 (409)
T 3hrp_A          290 SVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGN---------FYIVDGFKGYCLRKLDILDGYVS  358 (409)
T ss_dssp             EEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCC---------EEEEETTTTCEEEEEETTTTEEE
T ss_pred             EEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCC---------EEEEeCCCCCEEEEEECCCCEEE
Confidence            9999987654  22222221               3467889988874         566677 7899999998777753


Q ss_pred             EEecCC---------------CCCEEEEEEcCCCCEEEEEeCCCcEEEEec
Q 008496          485 YSLNGH---------------REPVYSLAFSPTGEYLASGSLDKSMHIWSL  520 (563)
Q Consensus       485 ~~~~~h---------------~~~i~~l~~spdg~~lasgs~dg~v~iw~~  520 (563)
                       .+.++               -.....|+++|+|.++++-..+++|+.+++
T Consensus       359 -~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          359 -TVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             -EEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred             -EEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence             33333               234789999999988888888888888765

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.42  E-value=5.8e-12  Score=124.45  Aligned_cols=181  Identities=12%  Similarity=0.072  Sum_probs=134.0

Q ss_pred             CEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecC
Q 008496          317 PIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAG  396 (563)
Q Consensus       317 ~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~  396 (563)
                      ++..|++++....+++|+.+ .+++|++....-.  +.  ...                  +.        ..+.... .
T Consensus        39 ~~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~--~~--~~~------------------~~--------~~~~~~~-~   86 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGS-KAVVGELQLLRDH--IT--SDS------------------TP--------LTFKWEK-E   86 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETT-EEEEEEHHHHHHH--HH--SSS------------------CC--------CCCSEEE-E
T ss_pred             cccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhh--hc--ccc------------------cc--------ccceEEe-e
Confidence            67889999999999999987 5556986532100  00  000                  00        0111111 2


Q ss_pred             CCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEE
Q 008496          397 HQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLW  476 (563)
Q Consensus       397 h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iw  476 (563)
                      +.+ |..++|  ++++|+++ .++.|++||+.+.........|...+.++.+.+.           -+++++.||.|.+|
T Consensus        87 lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p-----------~~av~~~dG~L~v~  151 (388)
T 1xip_A           87 IPD-VIFVCF--HGDQVLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNN-----------TLVILNSVNDLSAL  151 (388)
T ss_dssp             CTT-EEEEEE--ETTEEEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECSS-----------EEEEEETTSEEEEE
T ss_pred             CCC-eeEEEE--CCCEEEEE-cCCcEEEEEchhhhccCccceeecceeeEEecCC-----------CEEEEECCCCEEEE
Confidence            455 899999  99999999 8899999999877666666677788888876542           17788999999999


Q ss_pred             eCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCee--EEEE------e----cCCCEEEEEEcCCC
Q 008496          477 DVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKI--VKTY------T----GNGGIFEVCWNKEG  544 (563)
Q Consensus       477 d~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~--~~~~------~----~~~~i~~l~w~~~g  544 (563)
                      |+..+....    +...|.+++|||+|  ++.|..||+|++|+...+.+  .+++      .    +...|.+++|.+++
T Consensus       152 dl~~~~~~~----~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~  225 (388)
T 1xip_A          152 DLRTKSTKQ----LAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQ  225 (388)
T ss_dssp             ETTTCCEEE----EEESEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSS
T ss_pred             EccCCcccc----ccCCceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCC
Confidence            999877653    34579999999999  78899999999999988776  5566      2    24569999999999


Q ss_pred             CEEEEE
Q 008496          545 DKIAAC  550 (563)
Q Consensus       545 ~~la~~  550 (563)
                      .+|++=
T Consensus       226 ~flv~y  231 (388)
T 1xip_A          226 DFLAVF  231 (388)
T ss_dssp             EEEEEE
T ss_pred             eEEEEE
Confidence            888753

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.40  E-value=1.6e-10  Score=111.89  Aligned_cols=230  Identities=9%  Similarity=0.038  Sum_probs=153.7

Q ss_pred             CeEEEEECCCCC-EEEEEeCCCeEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEee
Q 008496          276 DVTTLDWNGEGT-LLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFE  354 (563)
Q Consensus       276 ~V~~l~~s~~g~-~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~  354 (563)
                      ......|+++|+ +++++..++.|..|+.++.. ..+..+...+.++.++++|+.+++...++.|.+|+.. +.......
T Consensus        46 ~~egp~~~~~g~~l~~~d~~~~~i~~~~~~g~~-~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~  123 (305)
T 3dr2_A           46 WSEGPAWWEAQRTLVWSDLVGRRVLGWREDGTV-DVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVG  123 (305)
T ss_dssp             SEEEEEEEGGGTEEEEEETTTTEEEEEETTSCE-EEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEC
T ss_pred             CccCCeEeCCCCEEEEEECCCCEEEEEeCCCCE-EEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEe
Confidence            356788999998 66777788999999987653 4455566778999999999966665566889999875 43211100


Q ss_pred             ecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecC-CCcceeEEEECCCCCEEEE----EeC-----------
Q 008496          355 FHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAG-HQGEVNCVKWDPTGSLLAS----CSD-----------  418 (563)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~-h~~~i~~~~~~~~~~~las----~s~-----------  418 (563)
                      .                                      ..+ ....++.++++|+|++.+|    |..           
T Consensus       124 ~--------------------------------------~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~  165 (305)
T 3dr2_A          124 R--------------------------------------YAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPE  165 (305)
T ss_dssp             E--------------------------------------ETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCS
T ss_pred             c--------------------------------------cCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccc
Confidence            0                                      000 0124567888999998876    332           


Q ss_pred             --CCcEEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCC------CeEEEEeCCCCeEE--EEe-
Q 008496          419 --DVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFD------STVKLWDVELGKLL--YSL-  487 (563)
Q Consensus       419 --dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~d------g~i~iwd~~~~~~~--~~~-  487 (563)
                        .+.|..||..+++.....  .......++|+|++.         .|..+...      +.|.+|++..+...  ..+ 
T Consensus       166 ~~~~~v~~~d~~~g~~~~~~--~~~~p~gl~~spdg~---------~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~  234 (305)
T 3dr2_A          166 LAHHSVYRLPPDGSPLQRMA--DLDHPNGLAFSPDEQ---------TLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFA  234 (305)
T ss_dssp             SSCEEEEEECSSSCCCEEEE--EESSEEEEEECTTSS---------EEEEEECCC---CCCEEEEEEEETTEEEEEEEEE
T ss_pred             cCCCeEEEEcCCCCcEEEEe--cCCCCcceEEcCCCC---------EEEEEecCCcCCCCCEEEEEEecCCCccCCeEEE
Confidence              245677776666543322  334567899999875         34444443      78999998755411  111 


Q ss_pred             cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEecCCCEEEEEEcCCCCEEEEEECCCeEEEEE
Q 008496          488 NGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLD  560 (563)
Q Consensus       488 ~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~~~~i~~l~w~~~g~~la~~~~~~~v~v~~  560 (563)
                      .........++++++|++.++. .+| |.+|+. +++.+..+.....+..++|+++++.|.++..+ .+..++
T Consensus       235 ~~~~~~pdgi~~d~~G~lwv~~-~~g-v~~~~~-~g~~~~~~~~~~~~~~~~f~~d~~~L~it~~~-~l~~~~  303 (305)
T 3dr2_A          235 SVPDGLPDGFCVDRGGWLWSSS-GTG-VCVFDS-DGQLLGHIPTPGTASNCTFDQAQQRLFITGGP-CLWMLP  303 (305)
T ss_dssp             CCSSSCCCSEEECTTSCEEECC-SSE-EEEECT-TSCEEEEEECSSCCCEEEECTTSCEEEEEETT-EEEEEE
T ss_pred             ECCCCCCCeEEECCCCCEEEec-CCc-EEEECC-CCCEEEEEECCCceeEEEEeCCCCEEEEEcCC-eEEEEE
Confidence            1122334678999999965544 444 999998 57777777766678899999999999988776 444444

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.39  E-value=2.1e-10  Score=114.95  Aligned_cols=242  Identities=10%  Similarity=0.072  Sum_probs=161.4

Q ss_pred             EEEECCCCCEEEEEe----------CCCeEEEEEcCC-ceeEeeccC-------CCCEEEEEeCCCCCEEEEeeC--CCc
Q 008496          279 TLDWNGEGTLLATGS----------YDGQARIWSTNG-DLKCTLSKH-------KGPIFSLKWNKKGDYLLTGSC--DKT  338 (563)
Q Consensus       279 ~l~~s~~g~~l~sg~----------~dg~i~vw~~~~-~~~~~~~~h-------~~~V~~l~~~~~~~~l~s~s~--D~~  338 (563)
                      .++++|||++++++.          .++.|.++|... +....+.--       ......+.|+|+|++++.+..  +++
T Consensus       122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~  201 (426)
T 3c75_H          122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPA  201 (426)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCE
T ss_pred             ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCe
Confidence            789999999888876          367899999764 444443211       122356889999999998874  578


Q ss_pred             EEEEECCCCceeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCccee----eecCCCcc-eeEEEECCCCCEE
Q 008496          339 AIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIK----TFAGHQGE-VNCVKWDPTGSLL  413 (563)
Q Consensus       339 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~----~~~~h~~~-i~~~~~~~~~~~l  413 (563)
                      |.+.|+.+++.+..+.....  ..+.......|++.+.|+.+.+.+....+...    .+.-...+ ...+.+.+++..+
T Consensus       202 VsVID~~t~kvv~~I~v~g~--~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~  279 (426)
T 3c75_H          202 VGVVDLEGKTFDRMLDVPDC--YHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRL  279 (426)
T ss_dssp             EEEEETTTTEEEEEEECCSE--EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEE
T ss_pred             EEEEECCCCeEEEEEEcCCc--eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEE
Confidence            99999999998887764221  12222233566777788888777775444332    12111112 2245789998887


Q ss_pred             EEEeCCCcEEEEeCCCCcee--eeecc----------cCCCEEEEEEccCCCCCCCCCCcEEEEEEe--------CCCeE
Q 008496          414 ASCSDDVTAKIWNMKQDKYV--HDLRE----------HSKEIYTIRWSPTGSGTNNPNQQLILASAS--------FDSTV  473 (563)
Q Consensus       414 as~s~dg~i~iwd~~~~~~~--~~~~~----------~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s--------~dg~i  473 (563)
                      +..+..+.+.+.|.......  ..+..          .......++++|++.       .++++...        ..+.|
T Consensus       280 ~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~-------rlyVa~~~~~~gthk~~s~~V  352 (426)
T 3c75_H          280 VWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSD-------RIYLLVDQRDEWKHKAASRFV  352 (426)
T ss_dssp             EEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGT-------EEEEEEEECCTTCTTSCEEEE
T ss_pred             EEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCC-------EEEEEecccccccccCCCCEE
Confidence            77788899999998654321  11100          001111256677654       22333221        13579


Q ss_pred             EEEeCCCCeEEEEecCCCCCEEEEEEcCCCC-EEEEEe-CCCcEEEEecCCCeeEEEEe
Q 008496          474 KLWDVELGKLLYSLNGHREPVYSLAFSPTGE-YLASGS-LDKSMHIWSLKEGKIVKTYT  530 (563)
Q Consensus       474 ~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~-~lasgs-~dg~v~iw~~~~~~~~~~~~  530 (563)
                      .+.|+.+.+.+.++..- .....++|+|||+ +++++. .++.|.|+|+.++++++++.
T Consensus       353 sVID~~T~kvv~~I~vg-~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI~  410 (426)
T 3c75_H          353 VVLNAETGERINKIELG-HEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSVD  410 (426)
T ss_dssp             EEEETTTCCEEEEEEEE-EEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEEC
T ss_pred             EEEECCCCeEEEEEECC-CCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEec
Confidence            99999999998887532 2468899999999 888887 58999999999999999973

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.39  E-value=2.3e-11  Score=131.90  Aligned_cols=235  Identities=14%  Similarity=0.157  Sum_probs=155.2

Q ss_pred             CCCCEEEEEeCCCCCEEEE-----eeCCCcEEEEECCCCceeEEeeecccCeEEEecCCCceEEEEeCCC----------
Q 008496          314 HKGPIFSLKWNKKGDYLLT-----GSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDN----------  378 (563)
Q Consensus       314 h~~~V~~l~~~~~~~~l~s-----~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~----------  378 (563)
                      |...+.+++|||+|++|+-     |+.+.+|++||+.+++..... ........+.|.++..|+.++.+.          
T Consensus       127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~-~~~~k~~~~~WsDg~~l~y~~~~~~~~~~~~~~~  205 (693)
T 3iuj_A          127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETP-LKDVKFSGISWLGNEGFFYSSYDKPDGSELSART  205 (693)
T ss_dssp             SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEE-EEEEESCCCEEETTTEEEEEESSCCC-------C
T ss_pred             CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccc-cCCceeccEEEeCCCEEEEEEecCcccccccccC
Confidence            5557888999999998873     333357999999999865431 111112345677445566665553          


Q ss_pred             ---eEEEEEcCCCcc--eeeec--C-CCcceeEEEECCCCCEEEEEeC----CCcEEEEeCCCCc-eeeeecccCCCEEE
Q 008496          379 ---MIYVCKIGENRP--IKTFA--G-HQGEVNCVKWDPTGSLLASCSD----DVTAKIWNMKQDK-YVHDLREHSKEIYT  445 (563)
Q Consensus       379 ---~i~~~~~~~~~~--~~~~~--~-h~~~i~~~~~~~~~~~las~s~----dg~i~iwd~~~~~-~~~~~~~~~~~i~~  445 (563)
                         .|++|++++...  ...+.  . |...+..+.|+|||++|+..+.    +..|.+||+.++. ....+..+......
T Consensus       206 ~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~  285 (693)
T 3iuj_A          206 DQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVS  285 (693)
T ss_dssp             CCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEE
T ss_pred             CCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEE
Confidence               489999987643  33333  3 4445778999999998754332    3488999987653 33445555555555


Q ss_pred             EEEccCCCCCCCCCCcEEEEEEeCC---CeEEEEeCCCCeE--EEEecCCCCCEEEEEEcCCCCEEEEEeCCC---cEEE
Q 008496          446 IRWSPTGSGTNNPNQQLILASASFD---STVKLWDVELGKL--LYSLNGHREPVYSLAFSPTGEYLASGSLDK---SMHI  517 (563)
Q Consensus       446 ~~~~p~~~~~~~~~~~~~l~s~s~d---g~i~iwd~~~~~~--~~~~~~h~~~i~~l~~spdg~~lasgs~dg---~v~i  517 (563)
                      . |++++.        .+++....+   +.|..+|+.++..  ...+..|...+.  .|+|++++|+....++   .|++
T Consensus       286 ~-~~~~g~--------~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~  354 (693)
T 3iuj_A          286 L-VDNKGS--------TLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQ  354 (693)
T ss_dssp             E-EEEETT--------EEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEE
T ss_pred             E-EeccCC--------EEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEE
Confidence            4 555543        244444443   6899999987653  234556666655  8999999888766543   6899


Q ss_pred             EecCCCeeEEEEe--cCCCEEEEEEcCCCCEEEEEECC----CeEEEEEe
Q 008496          518 WSLKEGKIVKTYT--GNGGIFEVCWNKEGDKIAACFAN----HTVCVLDF  561 (563)
Q Consensus       518 w~~~~~~~~~~~~--~~~~i~~l~w~~~g~~la~~~~~----~~v~v~~~  561 (563)
                      |++..+. ...+.  ..+.+..++++++++.|+..+.+    +++..+|+
T Consensus       355 ~d~~g~~-~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~  403 (693)
T 3iuj_A          355 FDYEGKR-VREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEP  403 (693)
T ss_dssp             ECTTSCE-EEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECT
T ss_pred             EECCCCe-eEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEEC
Confidence            9987544 44443  34557788999999998888776    67777775

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.39  E-value=1.1e-11  Score=122.50  Aligned_cols=166  Identities=11%  Similarity=0.071  Sum_probs=129.0

Q ss_pred             CeEEEEECCCCCEEEEEeCCCeEEEEEcCCc----------e-eEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEEC
Q 008496          276 DVTTLDWNGEGTLLATGSYDGQARIWSTNGD----------L-KCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDV  344 (563)
Q Consensus       276 ~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~----------~-~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~  344 (563)
                      .+..|++++...++++|+.++ +++|++..-          . ......+.+ |+.|+|  ++++|+++ .++.|++||+
T Consensus        39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv  113 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLDL  113 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEES
T ss_pred             cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEc
Confidence            588999999999999999985 555974311          1 112234666 999999  89999998 8899999999


Q ss_pred             CCCceeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEE
Q 008496          345 KTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKI  424 (563)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~i  424 (563)
                      .+.........+..++.++.+.... ++++..||.+++|++.......    +...|+|++|+|+|  ++.|..||++++
T Consensus       114 ~sl~~~~~~~~~~~~v~~i~~~~p~-~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~~vg~~dg~i~~  186 (388)
T 1xip_A          114 EELSEFRTVTSFEKPVFQLKNVNNT-LVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--LAVLLKDRSFQS  186 (388)
T ss_dssp             SSTTCEEEEEECSSCEEEEEECSSE-EEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE--EEEEETTSCEEE
T ss_pred             hhhhccCccceeecceeeEEecCCC-EEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc--eEEEEcCCcEEE
Confidence            8776655566666777777776553 8889999999999998766543    44579999999999  678999999999


Q ss_pred             EeCCCCce--eeee------c---ccCCCEEEEEEccCCC
Q 008496          425 WNMKQDKY--VHDL------R---EHSKEIYTIRWSPTGS  453 (563)
Q Consensus       425 wd~~~~~~--~~~~------~---~~~~~i~~~~~~p~~~  453 (563)
                      |+......  ..++      .   +|...|.+|.|.+++.
T Consensus       187 ~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~  226 (388)
T 1xip_A          187 FAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQD  226 (388)
T ss_dssp             EEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSE
T ss_pred             EcCCCccccccceecCCcccccccCCCeeEEEEEEecCCe
Confidence            98877664  4445      2   3678899999998753

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.38  E-value=1.9e-10  Score=113.08  Aligned_cols=266  Identities=10%  Similarity=0.037  Sum_probs=172.6

Q ss_pred             ECCCCCEEEEEeC-----CCeEEEEEcC-CceeEeeccCCCCEEEEEeCCCCCEEEEee----------CCCcEEEEECC
Q 008496          282 WNGEGTLLATGSY-----DGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGS----------CDKTAIVWDVK  345 (563)
Q Consensus       282 ~s~~g~~l~sg~~-----dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s----------~D~~v~iwd~~  345 (563)
                      ..|+++.+.+...     ++.|.+.|.. ++...++..-..+  .+.++|+|++++.++          .++.|.+||..
T Consensus        40 ~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P--~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~  117 (386)
T 3sjl_D           40 PAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPV  117 (386)
T ss_dssp             CCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTT
T ss_pred             cCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC--cEEECCCCCEEEEEcccccccccCCCCCEEEEEECC
Confidence            3578888887765     6789999976 4555566544555  399999999988776          36789999999


Q ss_pred             CCceeEEeeecc-------cCeEEEecCCC--ceEEEEe-CCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEE
Q 008496          346 TEEWKQQFEFHS-------GPTLDVDWRNN--VSFATSS-TDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLAS  415 (563)
Q Consensus       346 ~~~~~~~~~~~~-------~~~~~~~~~~~--~~~~~~~-~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las  415 (563)
                      +.+....+....       .....+.+..+  ..+++.. .++.|.++|..+.+.+.++.-..  . ...+....+.+++
T Consensus       118 t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g--~-~~~~P~g~~~~~~  194 (386)
T 3sjl_D          118 TLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD--C-YHIFPTAPDTFFM  194 (386)
T ss_dssp             TCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--E-EEEEEEETTEEEE
T ss_pred             CCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC--c-ceeecCCCceeEE
Confidence            999888776532       12223344333  3344443 37899999999998887774321  1 1223223456677


Q ss_pred             EeCCCcEEEEeCCC-Cceeeeeccc----CCCEE-EEEEc-cCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCe--EEEE
Q 008496          416 CSDDVTAKIWNMKQ-DKYVHDLREH----SKEIY-TIRWS-PTGSGTNNPNQQLILASASFDSTVKLWDVELGK--LLYS  486 (563)
Q Consensus       416 ~s~dg~i~iwd~~~-~~~~~~~~~~----~~~i~-~~~~~-p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~--~~~~  486 (563)
                      .+.||++-+.++.+ ++.......+    ..++. ...|. ++|        ..+  -.+.+|.|.+.|+..+.  .+..
T Consensus       195 ~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG--------~~~--~vs~~g~V~v~d~~~~~~~v~~~  264 (386)
T 3sjl_D          195 HCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAG--------RLV--WPTYTGKIHQIDLSSGDAKFLPA  264 (386)
T ss_dssp             EETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTT--------EEE--EEBTTSEEEEEECTTSSCEECCC
T ss_pred             ECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCC--------cEE--EEeCCCEEEEEECCCCcceeecc
Confidence            78888888888875 4432211101    01111 11222 222        222  35568999999997653  2222


Q ss_pred             ec---------C-CCCCEEEEEEcCCCCEEEEEeC----------CCcEEEEecCCCeeEEEEecCCCEEEEEEcCCCC-
Q 008496          487 LN---------G-HREPVYSLAFSPTGEYLASGSL----------DKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGD-  545 (563)
Q Consensus       487 ~~---------~-h~~~i~~l~~spdg~~lasgs~----------dg~v~iw~~~~~~~~~~~~~~~~i~~l~w~~~g~-  545 (563)
                      +.         + ....+..++++|+++.|.....          .+.|.+.|+.++++++.+.....+..|++++||+ 
T Consensus       265 ~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~~~~~lavs~D~~~  344 (386)
T 3sjl_D          265 VEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKP  344 (386)
T ss_dssp             EESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECSSSSC
T ss_pred             eeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCCCcceEEECCCCCe
Confidence            21         0 0122345788999988776542          2579999999999999998777788999999997 


Q ss_pred             EEEEE-ECCCeEEEEEee
Q 008496          546 KIAAC-FANHTVCVLDFR  562 (563)
Q Consensus       546 ~la~~-~~~~~v~v~~~~  562 (563)
                      +|.++ ..++.|.|+|..
T Consensus       345 ~ly~tn~~~~~VsViD~~  362 (386)
T 3sjl_D          345 LLYALSTGDKTLYIHDAE  362 (386)
T ss_dssp             EEEEEETTTTEEEEEETT
T ss_pred             EEEEEcCCCCeEEEEECC
Confidence            66654 458899999964

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.36  E-value=3.1e-11  Score=119.13  Aligned_cols=256  Identities=9%  Similarity=0.047  Sum_probs=164.5

Q ss_pred             CCeEEEEECCCCCEEEEEe--CCCeEEEEEc-CCceeE------eeccCCCCEEEEEeCCCCCEEEEeeC-----CCcEE
Q 008496          275 KDVTTLDWNGEGTLLATGS--YDGQARIWST-NGDLKC------TLSKHKGPIFSLKWNKKGDYLLTGSC-----DKTAI  340 (563)
Q Consensus       275 ~~V~~l~~s~~g~~l~sg~--~dg~i~vw~~-~~~~~~------~~~~h~~~V~~l~~~~~~~~l~s~s~-----D~~v~  340 (563)
                      ..+..++++++|+++++..  .++.++||.. ++.+..      ....|-..+.+++++++|+.+++-..     +..|.
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~   96 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLV   96 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEEE
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCeecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEE
Confidence            3578999999999998864  2343555554 444321      11235568999999999875555433     57899


Q ss_pred             EEECCCCceeEEeeeccc------CeEEEecC--CCceEEEEe---CCCeEEEEEcCCCcceeeecCCCccee-EEEECC
Q 008496          341 VWDVKTEEWKQQFEFHSG------PTLDVDWR--NNVSFATSS---TDNMIYVCKIGENRPIKTFAGHQGEVN-CVKWDP  408 (563)
Q Consensus       341 iwd~~~~~~~~~~~~~~~------~~~~~~~~--~~~~~~~~~---~d~~i~~~~~~~~~~~~~~~~h~~~i~-~~~~~~  408 (563)
                      +||+.+++....+.....      ...++...  ....+++..   .++.|++|+..+.+..+.+.+|..... ...+.+
T Consensus        97 ~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~  176 (343)
T 2qe8_A           97 AWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVI  176 (343)
T ss_dssp             EEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEE
T ss_pred             EEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccceeE
Confidence            999999987776654321      12344443  344556655   678999999987776666665532211 133445


Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCC-eEEEEeCC---CCe--
Q 008496          409 TGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDS-TVKLWDVE---LGK--  482 (563)
Q Consensus       409 ~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg-~i~iwd~~---~~~--  482 (563)
                      +|..+.+.+.++.++.|..              .+..++|+|++.         .|..+..++ .|..++..   .+.  
T Consensus       177 ~g~~~~~~~~~g~~~~~~~--------------~~~gia~s~dg~---------~ly~~~~~~~~l~~~~~~~~~~~~~~  233 (343)
T 2qe8_A          177 DGVPVQIGQPDGTVIRPHL--------------GVNGIVLDAENE---------WLYLSPMHSTSMYRIKSADLSNLQLT  233 (343)
T ss_dssp             TTEECBEECTTSCEECCCC--------------CEEEEEECTTSC---------EEEEEESSCSEEEEEEHHHHTCTTCC
T ss_pred             CCEEEEeccCCCceeceec--------------ccceeEeccCCC---------EEEEEeCCCCeEEEEEHHHhcCCCCC
Confidence            6777777788888776641              356799999875         455555555 44444421   110  


Q ss_pred             ---EE--EEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEec--CCCEEEEEEcCCCCEEEEEECC
Q 008496          483 ---LL--YSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTG--NGGIFEVCWNKEGDKIAACFAN  553 (563)
Q Consensus       483 ---~~--~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~--~~~i~~l~w~~~g~~la~~~~~  553 (563)
                         ..  ....++......++++++|.++++...++.|.+|+..+|++......  -..+.+++++++|+.++++...
T Consensus       234 ~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~  311 (343)
T 2qe8_A          234 DAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQL  311 (343)
T ss_dssp             HHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCG
T ss_pred             hhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeCcc
Confidence               00  01112333456799999999999998999999999866765433332  2347899999999877776543

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.35  E-value=2.5e-10  Score=114.29  Aligned_cols=264  Identities=8%  Similarity=-0.006  Sum_probs=166.7

Q ss_pred             CCCCEEEEEeCC-----CeEEEEEcCC-ceeEeeccCCCCEEEEEeCCCCCEEEEee----------CCCcEEEEECCCC
Q 008496          284 GEGTLLATGSYD-----GQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGS----------CDKTAIVWDVKTE  347 (563)
Q Consensus       284 ~~g~~l~sg~~d-----g~i~vw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s----------~D~~v~iwd~~~~  347 (563)
                      +++..+++....     +.|.+.|... +...++..-..|  .+.++|+|++|+.+.          .++.|.++|..+.
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~  159 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF  159 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred             CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC
Confidence            345555554432     6899999764 455555544456  899999999988876          3678999999999


Q ss_pred             ceeEEeeec-------ccCeEEEecCCC--ceEEEEeC-CCeEEEEEcCCCcceeeecCCCcceeEEEECCCC-CEEEEE
Q 008496          348 EWKQQFEFH-------SGPTLDVDWRNN--VSFATSST-DNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTG-SLLASC  416 (563)
Q Consensus       348 ~~~~~~~~~-------~~~~~~~~~~~~--~~~~~~~~-d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~-~~las~  416 (563)
                      +.+..+...       ......+.+..+  ..+++... ++.|.+.|..+.+.+..+.--.    +....|++ ..+++.
T Consensus       160 ~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g----~~~~~p~g~~~~v~~  235 (426)
T 3c75_H          160 LPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD----CYHIFPASPTVFYMN  235 (426)
T ss_dssp             CEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS----EEEEEEEETTEEEEE
T ss_pred             cEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCC----ceeeccCCCcEEEEE
Confidence            988877643       111223334333  33344333 6889999999988777665311    12233333 455666


Q ss_pred             eCCCcEEEEeCCCCceeee----ecccCCCE-EEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEE----Ee
Q 008496          417 SDDVTAKIWNMKQDKYVHD----LREHSKEI-YTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLY----SL  487 (563)
Q Consensus       417 s~dg~i~iwd~~~~~~~~~----~~~~~~~i-~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~----~~  487 (563)
                      +.||.+.+.+..+++....    +.....++ ..+.+.+++.        .+++ .+..+.|.+.|...+....    .+
T Consensus       236 ~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~--------~~~~-~s~~g~V~ViD~~~~~~~v~~~~~~  306 (426)
T 3c75_H          236 CRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSG--------RLVW-PTYTGKIFQADLTAEGATFRAPIEA  306 (426)
T ss_dssp             ETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTC--------EEEE-EBTTSEEEEEEECSSCEEECCCEES
T ss_pred             cCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCC--------EEEE-EeCCCcEEEEeccCCceEEeeeeee
Confidence            7777777777744443311    11111111 1223445442        2333 3567899999986544321    11


Q ss_pred             cC-C-------CCCEEEEEEcCCCCEEEEEeC----------CCcEEEEecCCCeeEEEEecCCCEEEEEEcCCCC-EEE
Q 008496          488 NG-H-------REPVYSLAFSPTGEYLASGSL----------DKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGD-KIA  548 (563)
Q Consensus       488 ~~-h-------~~~i~~l~~spdg~~lasgs~----------dg~v~iw~~~~~~~~~~~~~~~~i~~l~w~~~g~-~la  548 (563)
                      .. .       ......++|+||++.+.+...          ++.|.+.|+.++++++++........++|+|||+ +|+
T Consensus       307 ~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~~P~gia~spDg~~~ly  386 (426)
T 3c75_H          307 LTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGHEIDSINVSQDAEPLLY  386 (426)
T ss_dssp             SCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEE
T ss_pred             ccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCCCcCeEEEccCCCEEEE
Confidence            00 0       011223789999887665532          3579999999999999998766788999999999 787


Q ss_pred             EEE-CCCeEEEEEee
Q 008496          549 ACF-ANHTVCVLDFR  562 (563)
Q Consensus       549 ~~~-~~~~v~v~~~~  562 (563)
                      ++. .++.|.|||.+
T Consensus       387 v~n~~s~~VsVID~~  401 (426)
T 3c75_H          387 ALSAGTQTLHIYDAA  401 (426)
T ss_dssp             EEETTTTEEEEEETT
T ss_pred             EEcCCCCeEEEEECC
Confidence            776 58999999964

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.34  E-value=2.4e-10  Score=123.79  Aligned_cols=243  Identities=15%  Similarity=0.135  Sum_probs=150.8

Q ss_pred             cCCCCceEEEEECCCCCEEEEe-----eCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCC
Q 008496          212 EGHTSEVCACAWSPAGSLLASG-----SGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG  286 (563)
Q Consensus       212 ~~h~~~V~~~~~sp~~~~latg-----s~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g  286 (563)
                      .+|...+..++|||||++||.+     +.+..|++||+.++....           . .....      ....++|+ ||
T Consensus       125 ~~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~-----------~-~~~~~------k~~~~~Ws-Dg  185 (693)
T 3iuj_A          125 PDGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLE-----------T-PLKDV------KFSGISWL-GN  185 (693)
T ss_dssp             TTSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEE-----------E-EEEEE------ESCCCEEE-TT
T ss_pred             CCCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCc-----------c-ccCCc------eeccEEEe-CC
Confidence            3466678899999999988843     334689999998764210           0 11000      02456899 99


Q ss_pred             CEEEEEeCCC-------------eEEEEEcCCce-----eEeecc-CCCCEEEEEeCCCCCEEEEeeC----CCcEEEEE
Q 008496          287 TLLATGSYDG-------------QARIWSTNGDL-----KCTLSK-HKGPIFSLKWNKKGDYLLTGSC----DKTAIVWD  343 (563)
Q Consensus       287 ~~l~sg~~dg-------------~i~vw~~~~~~-----~~~~~~-h~~~V~~l~~~~~~~~l~s~s~----D~~v~iwd  343 (563)
                      +.|+.++.+.             .|++|++....     +..... |...+.++.|+|+|++|+....    ++.|.+||
T Consensus       186 ~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d  265 (693)
T 3iuj_A          186 EGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKD  265 (693)
T ss_dssp             TEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEE
T ss_pred             CEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEE
Confidence            9999998874             38999875432     222233 4455788999999998864432    24677777


Q ss_pred             CCCCceeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEE-EEeCC---
Q 008496          344 VKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLA-SCSDD---  419 (563)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~la-s~s~d---  419 (563)
                      +.++..                                        ....+..+....... |+++|..|+ +...+   
T Consensus       266 ~~~~~~----------------------------------------~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~  304 (693)
T 3iuj_A          266 LSQENA----------------------------------------PLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPN  304 (693)
T ss_dssp             TTSTTC----------------------------------------CCEEEECSSSSCEEE-EEEETTEEEEEECTTCTT
T ss_pred             CCCCCC----------------------------------------ceEEEeCCCCceEEE-EeccCCEEEEEECCCCCC
Confidence            655420                                        111122222223233 445555444 33333   


Q ss_pred             CcEEEEeCCCCce--eeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCC--eEEEEeCCCCeEEEEec-CCCCCE
Q 008496          420 VTAKIWNMKQDKY--VHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDS--TVKLWDVELGKLLYSLN-GHREPV  494 (563)
Q Consensus       420 g~i~iwd~~~~~~--~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg--~i~iwd~~~~~~~~~~~-~h~~~i  494 (563)
                      +.|..+++.++..  ...+..|...+.  .|+|++.        .++++...++  .|++||+..+. ...+. .....+
T Consensus       305 ~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~--------~lv~~~~~~g~~~l~~~d~~g~~-~~~l~~p~~~~~  373 (693)
T 3iuj_A          305 RRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSG--------YLFAEYMVDATARVEQFDYEGKR-VREVALPGLGSV  373 (693)
T ss_dssp             CEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETT--------EEEEEEEETTEEEEEEECTTSCE-EEEECCSSSSEE
T ss_pred             CEEEEEeCCCCCccccEEEecCCCCEE--EEEEECC--------EEEEEEEECCeeEEEEEECCCCe-eEEeecCCCceE
Confidence            5788889887643  234555655555  7888764        3455555555  68899987544 44443 234567


Q ss_pred             EEEEEcCCCCEEEEEeCC----CcEEEEecCCCee
Q 008496          495 YSLAFSPTGEYLASGSLD----KSMHIWSLKEGKI  525 (563)
Q Consensus       495 ~~l~~spdg~~lasgs~d----g~v~iw~~~~~~~  525 (563)
                      ..++++|++..|+....+    ++|..||+.+++.
T Consensus       374 ~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~  408 (693)
T 3iuj_A          374 SGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAI  408 (693)
T ss_dssp             EECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCE
T ss_pred             EeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeE
Confidence            788889998777655443    7899999988764

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.33  E-value=2.3e-09  Score=103.25  Aligned_cols=226  Identities=12%  Similarity=0.108  Sum_probs=145.6

Q ss_pred             CCCceEEEEECCC-CCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEE
Q 008496          214 HTSEVCACAWSPA-GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATG  292 (563)
Q Consensus       214 h~~~V~~~~~sp~-~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg  292 (563)
                      +..-..+..|+|+ +.++++...++.|..|+..++..           ....        ....+.+++++++|+++++ 
T Consensus        11 ~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-----------~~~~--------~~~~~~~i~~~~dG~l~v~-   70 (297)
T 3g4e_A           11 NCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-----------QRVT--------MDAPVSSVALRQSGGYVAT-   70 (297)
T ss_dssp             CCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-----------EEEE--------CSSCEEEEEEBTTSSEEEE-
T ss_pred             CCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-----------EEEe--------CCCceEEEEECCCCCEEEE-
Confidence            3344568899996 55777777889999999865421           0110        1246899999999996554 


Q ss_pred             eCCCeEEEEEcCCceeEeeccC-----CCCEEEEEeCCCCCEEEEeeCCC---------cEEEEECCCCceeEEeeeccc
Q 008496          293 SYDGQARIWSTNGDLKCTLSKH-----KGPIFSLKWNKKGDYLLTGSCDK---------TAIVWDVKTEEWKQQFEFHSG  358 (563)
Q Consensus       293 ~~dg~i~vw~~~~~~~~~~~~h-----~~~V~~l~~~~~~~~l~s~s~D~---------~v~iwd~~~~~~~~~~~~~~~  358 (563)
                      . ++.|.+|+........+...     ...+..++++|+|+.+++...+.         ...||.+..            
T Consensus        71 ~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~------------  137 (297)
T 3g4e_A           71 I-GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFP------------  137 (297)
T ss_dssp             E-TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECT------------
T ss_pred             E-CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEEC------------
Confidence            4 56899999865433333221     23478899999998665443221         112222111            


Q ss_pred             CeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEE-EEEeCCCcEEEEeC--CCCce---
Q 008496          359 PTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLL-ASCSDDVTAKIWNM--KQDKY---  432 (563)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l-as~s~dg~i~iwd~--~~~~~---  432 (563)
                                                   ...+..+..+....+.++|+|+++.| ++.+.++.|.+|++  .++..   
T Consensus       138 -----------------------------~g~~~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~  188 (297)
T 3g4e_A          138 -----------------------------DHHVKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNR  188 (297)
T ss_dssp             -----------------------------TSCEEEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEE
T ss_pred             -----------------------------CCCEEEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCc
Confidence                                         00011111122345789999999865 55666889999987  34432   


Q ss_pred             --eeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEc-CCCCEEEEE
Q 008496          433 --VHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFS-PTGEYLASG  509 (563)
Q Consensus       433 --~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s-pdg~~lasg  509 (563)
                        ...+..+......+++.++|.         +.++....+.|..||..+++.+..+..+...+++++|+ ||++.|..+
T Consensus       189 ~~~~~~~~~~~~p~g~~~d~~G~---------lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~L~vt  259 (297)
T 3g4e_A          189 RSVYKLEKEEQIPDGMCIDAEGK---------LWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTTSCCFGGKNYSEMYVT  259 (297)
T ss_dssp             EEEEECCGGGCEEEEEEEBTTSC---------EEEEEETTTEEEEECTTTCCEEEEEECSSSBEEEEEEESGGGCEEEEE
T ss_pred             EEEEECCCCCCCCCeeEECCCCC---------EEEEEcCCCEEEEEcCCCceEEEEEECCCCCceEEEEeCCCCCEEEEE
Confidence              222333345667888888774         55666677889999999999988887776779999998 898776554


Q ss_pred             e
Q 008496          510 S  510 (563)
Q Consensus       510 s  510 (563)
                      +
T Consensus       260 ~  260 (297)
T 3g4e_A          260 C  260 (297)
T ss_dssp             E
T ss_pred             c
Confidence            4

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.31  E-value=5.2e-10  Score=108.28  Aligned_cols=235  Identities=14%  Similarity=0.059  Sum_probs=144.5

Q ss_pred             CCceeEecCCCCceEEEEECCCCC-EEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEEC
Q 008496          205 NSDVTILEGHTSEVCACAWSPAGS-LLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWN  283 (563)
Q Consensus       205 ~~~~~~l~~h~~~V~~~~~sp~~~-~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s  283 (563)
                      ...+..+..+.......+|+|+++ +++++..++.|..|+.. +..           ..+.       .....+..++|+
T Consensus        34 ~~~~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~~-----------~~~~-------~~~~~~~gl~~d   94 (305)
T 3dr2_A           34 DARLLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GTV-----------DVLL-------DATAFTNGNAVD   94 (305)
T ss_dssp             TCCCEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SCE-----------EEEE-------ESCSCEEEEEEC
T ss_pred             CCceEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CCE-----------EEEe-------CCCCccceeeEC
Confidence            334455555666678899999998 67777788999999863 211           1111       123458899999


Q ss_pred             CCCCEEEEEeCCCeEEEEEcCCceeEeeccC----CCCEEEEEeCCCCCEEEE----eeCC-------------CcEEEE
Q 008496          284 GEGTLLATGSYDGQARIWSTNGDLKCTLSKH----KGPIFSLKWNKKGDYLLT----GSCD-------------KTAIVW  342 (563)
Q Consensus       284 ~~g~~l~sg~~dg~i~vw~~~~~~~~~~~~h----~~~V~~l~~~~~~~~l~s----~s~D-------------~~v~iw  342 (563)
                      ++|+++++...++.|.+|+.++.........    ...+..+.+.|+|+..++    |..+             +.|..|
T Consensus        95 ~dG~l~v~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~  174 (305)
T 3dr2_A           95 AQQRLVHCEHGRRAITRSDADGQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRL  174 (305)
T ss_dssp             TTSCEEEEETTTTEEEEECTTSCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEE
T ss_pred             CCCCEEEEECCCCEEEEECCCCCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEE
Confidence            9999777666678899999876643322111    123566888888877765    3221             223333


Q ss_pred             ECCCCceeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCC---
Q 008496          343 DVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDD---  419 (563)
Q Consensus       343 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~d---  419 (563)
                      |..+++                                         .... . .....+.++|+|+++.|+.+...   
T Consensus       175 d~~~g~-----------------------------------------~~~~-~-~~~~p~gl~~spdg~~lyv~~~~~~~  211 (305)
T 3dr2_A          175 PPDGSP-----------------------------------------LQRM-A-DLDHPNGLAFSPDEQTLYVSQTPEQG  211 (305)
T ss_dssp             CSSSCC-----------------------------------------CEEE-E-EESSEEEEEECTTSSEEEEEECCC--
T ss_pred             cCCCCc-----------------------------------------EEEE-e-cCCCCcceEEcCCCCEEEEEecCCcC
Confidence            322221                                         1111 1 22345689999999977666554   


Q ss_pred             ---CcEEEEeCCCCcee--eee-cccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCC
Q 008496          420 ---VTAKIWNMKQDKYV--HDL-REHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREP  493 (563)
Q Consensus       420 ---g~i~iwd~~~~~~~--~~~-~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~  493 (563)
                         +.|.+|++..+...  ..+ .........+++.++|.        ++  .+..+ .|.+|+. .++.+..+..+. .
T Consensus       212 ~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~--------lw--v~~~~-gv~~~~~-~g~~~~~~~~~~-~  278 (305)
T 3dr2_A          212 HGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGW--------LW--SSSGT-GVCVFDS-DGQLLGHIPTPG-T  278 (305)
T ss_dssp             -CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSC--------EE--ECCSS-EEEEECT-TSCEEEEEECSS-C
T ss_pred             CCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCC--------EE--EecCC-cEEEECC-CCCEEEEEECCC-c
Confidence               68999998654311  011 11122233456666553        23  33344 5999998 477776666544 5


Q ss_pred             EEEEEEcCCCCEEEEEeCCCc
Q 008496          494 VYSLAFSPTGEYLASGSLDKS  514 (563)
Q Consensus       494 i~~l~~spdg~~lasgs~dg~  514 (563)
                      +.+++|+|+++.|..++.++.
T Consensus       279 ~~~~~f~~d~~~L~it~~~~l  299 (305)
T 3dr2_A          279 ASNCTFDQAQQRLFITGGPCL  299 (305)
T ss_dssp             CCEEEECTTSCEEEEEETTEE
T ss_pred             eeEEEEeCCCCEEEEEcCCeE
Confidence            789999999998888877653

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.30  E-value=4e-09  Score=103.09  Aligned_cols=222  Identities=11%  Similarity=0.005  Sum_probs=139.1

Q ss_pred             ceEEEEECCC-CCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEEeCC
Q 008496          217 EVCACAWSPA-GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYD  295 (563)
Q Consensus       217 ~V~~~~~sp~-~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~d  295 (563)
                      -..+.+|+|+ +.+++++..++.|.+|+..++..              ....     ....+.+++|+++|+++++. . 
T Consensus        50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~--------------~~~~-----~~~~v~~i~~~~dg~l~v~~-~-  108 (326)
T 2ghs_A           50 LGEGPTFDPASGTAWWFNILERELHELHLASGRK--------------TVHA-----LPFMGSALAKISDSKQLIAS-D-  108 (326)
T ss_dssp             BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEE--------------EEEE-----CSSCEEEEEEEETTEEEEEE-T-
T ss_pred             CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcE--------------EEEE-----CCCcceEEEEeCCCeEEEEE-C-
Confidence            3467899997 45667777788999999765321              0111     12468999999999887754 4 


Q ss_pred             CeEEEEEcCCceeEeeccC-----CCCEEEEEeCCCCCEEEEeeCC----CcEEEEECCCCceeEEeeecccCeEEEecC
Q 008496          296 GQARIWSTNGDLKCTLSKH-----KGPIFSLKWNKKGDYLLTGSCD----KTAIVWDVKTEEWKQQFEFHSGPTLDVDWR  366 (563)
Q Consensus       296 g~i~vw~~~~~~~~~~~~h-----~~~V~~l~~~~~~~~l~s~s~D----~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~  366 (563)
                      ..|.+|+..+.....+...     ...+..++++|+|+.+++...+    +...||.+.+++..                
T Consensus       109 ~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~~g~~~----------------  172 (326)
T 2ghs_A          109 DGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVT----------------  172 (326)
T ss_dssp             TEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEE----------------
T ss_pred             CCEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEeCCcEE----------------
Confidence            4588999754333333221     2357889999999866654322    11222221122110                


Q ss_pred             CCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEE-EEeCCCcEEEEeCC--CC-ce-----eeeec
Q 008496          367 NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLA-SCSDDVTAKIWNMK--QD-KY-----VHDLR  437 (563)
Q Consensus       367 ~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~la-s~s~dg~i~iwd~~--~~-~~-----~~~~~  437 (563)
                                                .+..+....+.++|+|+++.++ +.+.++.|.+|++.  ++ ..     ...+.
T Consensus       173 --------------------------~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~  226 (326)
T 2ghs_A          173 --------------------------KLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDST  226 (326)
T ss_dssp             --------------------------EEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECT
T ss_pred             --------------------------EeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECC
Confidence                                      0111112356899999998664 44567899999985  44 21     22222


Q ss_pred             ccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEc-CCCCEEEEEeC
Q 008496          438 EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFS-PTGEYLASGSL  511 (563)
Q Consensus       438 ~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s-pdg~~lasgs~  511 (563)
                      ........+++.++|.         +.++...++.|.+||. .++.+..+..+...+++++|+ |++..|..++.
T Consensus       227 ~~~~~p~gi~~d~~G~---------lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~af~g~d~~~L~vt~~  291 (326)
T 2ghs_A          227 GIKGGMDGSVCDAEGH---------IWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASRLLVTSA  291 (326)
T ss_dssp             TSSSEEEEEEECTTSC---------EEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSCEEEEEEB
T ss_pred             CCCCCCCeeEECCCCC---------EEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEEEEecCCCCEEEEEec
Confidence            2334567788877764         4555556788999998 577777776666679999998 89877655443

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.28  E-value=7.9e-14  Score=139.07  Aligned_cols=256  Identities=15%  Similarity=0.117  Sum_probs=137.8

Q ss_pred             CCCEEEEEeCCCeEEEEEc-CCceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeE--
Q 008496          285 EGTLLATGSYDGQARIWST-NGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTL--  361 (563)
Q Consensus       285 ~g~~l~sg~~dg~i~vw~~-~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~--  361 (563)
                      ++..+++++.||.|+.||. .|+....+..  +++.+..+..++..+++++.|+.|..||..+++.+..+..+.....  
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~   85 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQA   85 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTT
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccccc
Confidence            5678999999999999995 5777666654  4555555566777888889999999999988876655543321100  


Q ss_pred             EEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccCC
Q 008496          362 DVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSK  441 (563)
Q Consensus       362 ~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~  441 (563)
                      ......+..+++++.++.++.++..+++.+..+..+.    ...++|++..+++++.|+.|+.||.++++.+..+..+. 
T Consensus        86 sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~-  160 (369)
T 2hz6_A           86 SPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFD-  160 (369)
T ss_dssp             CSCC-----CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEECCCSSSSSCCCEEEEEE-
T ss_pred             CceEecCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCEEEEEECCCCCEEEeEeccc-
Confidence            0001123345566778899999998888776665543    23456788889999999999999999888665443211 


Q ss_pred             CEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEE-EEEcCCCCEE----EEEeCCCcEE
Q 008496          442 EIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYS-LAFSPTGEYL----ASGSLDKSMH  516 (563)
Q Consensus       442 ~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~-l~~spdg~~l----asgs~dg~v~  516 (563)
                       .....+.++.    ..+.  .++.++.||.|+.||..+|+.++... ...++.. ..++++|...    +.+  ++.++
T Consensus       161 -~~~~~~~~~~----~~~~--~v~~~~~dg~v~a~d~~tG~~~W~~~-~~~pv~~~~~~~~dg~~~v~~~~~~--~~~l~  230 (369)
T 2hz6_A          161 -YAASLPEDDV----DYKM--SHFVSNGDGLVVTVDSESGDVLWIQN-YASPVVAFYVWQREGLRKVMHINVA--VETLR  230 (369)
T ss_dssp             -ECCBCCCCCT----TCCC--CEEEEETSCEEEEECTTTCCEEEEEE-CSSCEEEEEECTTSSCEEECCEEEE--HHHHH
T ss_pred             -ccCccccCCc----cccc--eEEEECCCCEEEEEECCCCcEEEEec-CCCceEEEEEecCCceEeccceeec--cccee
Confidence             0011111110    0011  35568899999999999999998877 3455544 4567777542    222  34566


Q ss_pred             EEecCCCe----eEEEEecCCCEEEEEEcC--CCCEEEEEECCCeEEEEEe
Q 008496          517 IWSLKEGK----IVKTYTGNGGIFEVCWNK--EGDKIAACFANHTVCVLDF  561 (563)
Q Consensus       517 iw~~~~~~----~~~~~~~~~~i~~l~w~~--~g~~la~~~~~~~v~v~~~  561 (563)
                      .+|..+|+    .+..+...+.+.    +|  .+..|.++..+|.+.+++.
T Consensus       231 ~ld~~tG~~~~~~~W~~~~~~~~~----sp~~~~g~lyv~~~~G~l~al~~  277 (369)
T 2hz6_A          231 YLTFMSGEVGRITKWKYPFPKETE----AKSKLTPTLYVGKYSTSLYASPS  277 (369)
T ss_dssp             HHHHHHHHHHHHHTSCCCCCCHHH----HHHHSEEEECBEECSSCEECCEE
T ss_pred             eeehhcCCcccceeeeeccCcccc----ccccccceEEEecccCCEEecCc
Confidence            66666665    433332222110    11  2345555666666665554

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.25  E-value=1.5e-08  Score=101.17  Aligned_cols=303  Identities=9%  Similarity=0.058  Sum_probs=181.8

Q ss_pred             CCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeeccc---ccCCCCeEEEEECCCCCEEEEEeCCCeEEEEE
Q 008496          226 AGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRT---NEKSKDVTTLDWNGEGTLLATGSYDGQARIWS  302 (563)
Q Consensus       226 ~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~  302 (563)
                      .+..|+.++.++.+..+|..+++....          .. .....   ......+.+. ...++..++.++.++.+..+|
T Consensus        52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~----------~~-~~~~~~~~~~~~~~~~~~-~~~~~~~v~v~~~~g~l~a~d  119 (376)
T 3q7m_A           52 ADNVVYAADRAGLVKALNADDGKEIWS----------VS-LAEKDGWFSKEPALLSGG-VTVSGGHVYIGSEKAQVYALN  119 (376)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCEEEE----------EE-CCC---CCSCCCCCEEEE-EEEETTEEEEEETTSEEEEEE
T ss_pred             ECCEEEEEcCCCeEEEEEccCCceeee----------ec-CccccccccccCcccccC-ceEeCCEEEEEcCCCEEEEEE
Confidence            356777777888999999877653210          00 00000   0001122211 112356788889999999999


Q ss_pred             cC-CceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCe-----EEEecCCCceEEEEeC
Q 008496          303 TN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPT-----LDVDWRNNVSFATSST  376 (563)
Q Consensus       303 ~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~  376 (563)
                      .. |+.................  .+..++.++.++.+..+|..+++....+.......     ..... .+..+..+..
T Consensus       120 ~~tG~~~W~~~~~~~~~~~p~~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~-~~~~v~~g~~  196 (376)
T 3q7m_A          120 TSDGTVAWQTKVAGEALSRPVV--SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTT-AFGAAVVGGD  196 (376)
T ss_dssp             TTTCCEEEEEECSSCCCSCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEE-ETTEEEECCT
T ss_pred             CCCCCEEEEEeCCCceEcCCEE--ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEE-ECCEEEEEcC
Confidence            75 6665544332211111111  24578888899999999999998776554422110     00011 1345666777


Q ss_pred             CCeEEEEEcCCCcceeeecCCCc--c--ee---EEEECC--CCCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEEEE
Q 008496          377 DNMIYVCKIGENRPIKTFAGHQG--E--VN---CVKWDP--TGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIR  447 (563)
Q Consensus       377 d~~i~~~~~~~~~~~~~~~~h~~--~--i~---~~~~~~--~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~  447 (563)
                      ++.++.++..+++.+..+.....  .  +.   .+...|  .+..+..++.++.+..+|..+++.+.....  .....+.
T Consensus       197 ~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~--~~~~~~~  274 (376)
T 3q7m_A          197 NGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKREL--GSVNDFI  274 (376)
T ss_dssp             TTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECC--CCEEEEE
T ss_pred             CCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccC--CCCCCce
Confidence            88999999887776554432110  0  00   000111  245677788899999999999887655432  2233333


Q ss_pred             EccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCC-CCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeE
Q 008496          448 WSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGH-REPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIV  526 (563)
Q Consensus       448 ~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h-~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~  526 (563)
                      .. .+          .+..++.++.|..+|..+++.++..... ...+.....  .+..|..++.+|.|.++|..+|+++
T Consensus       275 ~~-~~----------~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~~  341 (376)
T 3q7m_A          275 VD-GN----------RIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVL--YNGNLVVGDSEGYLHWINVEDGRFV  341 (376)
T ss_dssp             EE-TT----------EEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEE
T ss_pred             EE-CC----------EEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEE--ECCEEEEEeCCCeEEEEECCCCcEE
Confidence            32 11          4566778999999999999998877522 222222233  2567888899999999999999998


Q ss_pred             EEEec-CCCEEE-EEEcCCCCEEEEEECCCeEEEEE
Q 008496          527 KTYTG-NGGIFE-VCWNKEGDKIAACFANHTVCVLD  560 (563)
Q Consensus       527 ~~~~~-~~~i~~-l~w~~~g~~la~~~~~~~v~v~~  560 (563)
                      ..+.. ...+.. +..  .+..|.++..+|.+..||
T Consensus       342 ~~~~~~~~~~~~~~~~--~~~~l~v~~~~G~l~~~~  375 (376)
T 3q7m_A          342 AQQKVDSSGFQTEPVA--ADGKLLIQAKDGTVYSIT  375 (376)
T ss_dssp             EEEECCTTCBCSCCEE--ETTEEEEEBTTSCEEEEE
T ss_pred             EEEecCCCcceeCCEE--ECCEEEEEeCCCEEEEEe
Confidence            87765 233321 111  256788888899998886

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.25  E-value=4.8e-10  Score=110.50  Aligned_cols=269  Identities=12%  Similarity=0.063  Sum_probs=159.5

Q ss_pred             CceEEEEECCCCCEEEEee--CCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEEe
Q 008496          216 SEVCACAWSPAGSLLASGS--GDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGS  293 (563)
Q Consensus       216 ~~V~~~~~sp~~~~latgs--~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~  293 (563)
                      ..+..++++|+|+++++..  .++.++||.+.++...           .+.........+...+..++++++|+++++-.
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~-----------~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~   85 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI-----------PFPPQSGNAIITFDTVLGIKSDGNGIVWMLDN   85 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEE-----------ESCCCCSSCCCCCSCEEEEEECSSSEEEEEEC
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCee-----------cCCCcccCcccceeEeeEEEEcCCCcEEEEcC
Confidence            5688999999999998864  2344777876532210           00000001112345799999999998777654


Q ss_pred             C-----CCeEEEEEcC-CceeEeecc------CCCCEEEEEeCCCCCEE-EEee---CCCcEEEEECCCCceeEEeeecc
Q 008496          294 Y-----DGQARIWSTN-GDLKCTLSK------HKGPIFSLKWNKKGDYL-LTGS---CDKTAIVWDVKTEEWKQQFEFHS  357 (563)
Q Consensus       294 ~-----dg~i~vw~~~-~~~~~~~~~------h~~~V~~l~~~~~~~~l-~s~s---~D~~v~iwd~~~~~~~~~~~~~~  357 (563)
                      .     ++.|.+||.. +++...+..      +...+..+++++++..+ ++..   .++.|.+||+.+++....+..|.
T Consensus        86 g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~  165 (343)
T 2qe8_A           86 GNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYP  165 (343)
T ss_dssp             HHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCT
T ss_pred             CCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCC
Confidence            4     5789999976 554544432      22346789999865454 5544   67899999998887655443221


Q ss_pred             cCeE-EEec-CCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCC-----
Q 008496          358 GPTL-DVDW-RNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD-----  430 (563)
Q Consensus       358 ~~~~-~~~~-~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~-----  430 (563)
                      .... ...+ .+...|...+.++.+..|              ...++.++|+|+++.|+.+..++. ++|.+...     
T Consensus       166 ~~~~~~~~~~~~g~~~~~~~~~g~~~~~--------------~~~~~gia~s~dg~~ly~~~~~~~-~l~~~~~~~~~~~  230 (343)
T 2qe8_A          166 GIAPEDIDLVIDGVPVQIGQPDGTVIRP--------------HLGVNGIVLDAENEWLYLSPMHST-SMYRIKSADLSNL  230 (343)
T ss_dssp             TTSCCSCCCEETTEECBEECTTSCEECC--------------CCCEEEEEECTTSCEEEEEESSCS-EEEEEEHHHHTCT
T ss_pred             cccccccceeECCEEEEeccCCCceece--------------ecccceeEeccCCCEEEEEeCCCC-eEEEEEHHHhcCC
Confidence            1100 0000 111222223333333221              123678999999998888777653 45543211     


Q ss_pred             c-----eee--eecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecC-CCCCEEEEEEcCC
Q 008496          431 K-----YVH--DLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNG-HREPVYSLAFSPT  502 (563)
Q Consensus       431 ~-----~~~--~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-h~~~i~~l~~spd  502 (563)
                      .     ...  ...++......++++++|.         ++++...++.|.+||..+++....... +.....+++|+++
T Consensus       231 ~~~~~~~~~~~~~~g~~g~pdgia~d~~G~---------l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~  301 (343)
T 2qe8_A          231 QLTDAELGSKIERYSEKPICDGISIDKDHN---------IYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSD  301 (343)
T ss_dssp             TCCHHHHHTTCEEEEECCSCSCEEECTTCC---------EEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTT
T ss_pred             CCChhhhhcceEecccCCCCceEEECCCCC---------EEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCC
Confidence            0     000  0112223344567777653         667778889999999866764333322 2345899999999


Q ss_pred             CCEEEEEeCCCcEEEEe
Q 008496          503 GEYLASGSLDKSMHIWS  519 (563)
Q Consensus       503 g~~lasgs~dg~v~iw~  519 (563)
                      |+++++.+..+.+.+|.
T Consensus       302 g~l~v~~~~~~~~~~f~  318 (343)
T 2qe8_A          302 GYLYFDCNQLHHSAPLN  318 (343)
T ss_dssp             SCEEEEECCGGGSGGGB
T ss_pred             CcEEEEeCccccccccc
Confidence            99888877666555444

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.24  E-value=6.2e-09  Score=111.89  Aligned_cols=254  Identities=13%  Similarity=0.141  Sum_probs=160.5

Q ss_pred             CCCEEEEEeCCCeEEEEEc-CCceeEeeccC-C----CCEEEEEeCCCCCEEEEeeC------CCcEEEEECCCCceeEE
Q 008496          285 EGTLLATGSYDGQARIWST-NGDLKCTLSKH-K----GPIFSLKWNKKGDYLLTGSC------DKTAIVWDVKTEEWKQQ  352 (563)
Q Consensus       285 ~g~~l~sg~~dg~i~vw~~-~~~~~~~~~~h-~----~~V~~l~~~~~~~~l~s~s~------D~~v~iwd~~~~~~~~~  352 (563)
                      ++..+++++.|+.+..+|. .|+.+..+..+ .    ..+.+--.- .+..++.++.      ++.|..+|..+++.+-.
T Consensus       127 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v-~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~  205 (677)
T 1kb0_A          127 WKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRV-FKGKVIIGNGGAEYGVRGYITAYDAETGERKWR  205 (677)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEE
T ss_pred             ECCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEE-ECCEEEEEecccccCCCCEEEEEECCCCcEEEE
Confidence            3567888899999999997 57776665543 1    111110000 2345665553      78999999999998766


Q ss_pred             eeecccC----------------------------------eEEEecCCCceEEEEeCC-------------------Ce
Q 008496          353 FEFHSGP----------------------------------TLDVDWRNNVSFATSSTD-------------------NM  379 (563)
Q Consensus       353 ~~~~~~~----------------------------------~~~~~~~~~~~~~~~~~d-------------------~~  379 (563)
                      +......                                  ...++...+ .+..+..+                   +.
T Consensus       206 ~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~-~vy~~~~~~~~w~~~~~~~~~gd~~~~~s  284 (677)
T 1kb0_A          206 WFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELN-TMYVGTGNGSPWSHKVRSPKGGDNLYLAS  284 (677)
T ss_dssp             EESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTT-EEEEECCCEESSCHHHHSTTCCCCTTTTE
T ss_pred             eccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCC-EEEEECCCCccccCCCCCccCCCCeeeEE
Confidence            6542211                                  011122222 33333332                   24


Q ss_pred             EEEEEcCCCcceeeecC--CC-------cceeEEEECCCC---CEEEEEeCCCcEEEEeCCCCceeeeecccCC------
Q 008496          380 IYVCKIGENRPIKTFAG--HQ-------GEVNCVKWDPTG---SLLASCSDDVTAKIWNMKQDKYVHDLREHSK------  441 (563)
Q Consensus       380 i~~~~~~~~~~~~~~~~--h~-------~~i~~~~~~~~~---~~las~s~dg~i~iwd~~~~~~~~~~~~~~~------  441 (563)
                      |+.+|..+++.+-.+..  |.       .....+....+|   +.++.++.+|.+.++|..+++.+..+.....      
T Consensus       285 v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~  364 (677)
T 1kb0_A          285 IVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGY  364 (677)
T ss_dssp             EEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEE
T ss_pred             EEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCccccc
Confidence            88888888877665542  21       112223333467   6789999999999999999988765442210      


Q ss_pred             -----CEE------------------------EEEEccCCCCCCCCCCcEEEEEEe------------------------
Q 008496          442 -----EIY------------------------TIRWSPTGSGTNNPNQQLILASAS------------------------  468 (563)
Q Consensus       442 -----~i~------------------------~~~~~p~~~~~~~~~~~~~l~s~s------------------------  468 (563)
                           ++.                        .++++|+        ..++++...                        
T Consensus       365 d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~--------~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~  436 (677)
T 1kb0_A          365 DKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQ--------TGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQS  436 (677)
T ss_dssp             CTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETT--------TTEEEEEEEECCCEEEECTTCCTTCCCTTSTTG
T ss_pred             CCCCceeeccccCcCCCccEECcCcccccCCCCceEcCC--------CCEEEEeChhcceeeeccccccccccccccccc
Confidence                 010                        1233332        223332211                        


Q ss_pred             ------------------CCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEe
Q 008496          469 ------------------FDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYT  530 (563)
Q Consensus       469 ------------------~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~  530 (563)
                                        ..|.|..||+.+++.++.+. +..++....++.++..++.|+.||.+++||.++|+++..+.
T Consensus       437 ~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~-~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~  515 (677)
T 1kb0_A          437 GTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVE-HVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAP  515 (677)
T ss_dssp             GGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEE-ESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             ccccccccccccccCCCCCccEEEEEeCCCCcEEeecC-CCCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeee
Confidence                              12789999999999998886 34455666677888899999999999999999999999987


Q ss_pred             cCCCE--EEEEEcCCCCEEEE
Q 008496          531 GNGGI--FEVCWNKEGDKIAA  549 (563)
Q Consensus       531 ~~~~i--~~l~w~~~g~~la~  549 (563)
                      ...++  .-+.|..+|+.+++
T Consensus       516 ~~~~~~~~p~~y~~~G~~~v~  536 (677)
T 1kb0_A          516 TGTGVVAAPSTYMVDGRQYVS  536 (677)
T ss_dssp             CSSCCCSCCEEEEETTEEEEE
T ss_pred             CCCCcccCCEEEEeCCEEEEE
Confidence            65443  34677889974443

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.23  E-value=4.6e-09  Score=113.14  Aligned_cols=303  Identities=11%  Similarity=0.119  Sum_probs=177.4

Q ss_pred             CCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccc-cC-CCCe-EEEEECCCCCEEEEEeCCCeEEEEEc
Q 008496          227 GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTN-EK-SKDV-TTLDWNGEGTLLATGSYDGQARIWST  303 (563)
Q Consensus       227 ~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~V-~~l~~s~~g~~l~sg~~dg~i~vw~~  303 (563)
                      +..|+.++.++.+.-+|..+|+..-.....         ...... .. ...+ ..+..  .+..+++++.|+.+..+|.
T Consensus        70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~---------~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa  138 (689)
T 1yiq_A           70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQ---------SDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDA  138 (689)
T ss_dssp             TTEEEEECGGGCEEEEETTTCCEEEEECCC---------CCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEET
T ss_pred             CCEEEEEcCCCeEEEEECCCCceeEEEcCC---------CCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEEC
Confidence            566677777888888888776532111000         000000 00 0000 00111  3567888999999999997


Q ss_pred             -CCceeEeeccC--CCCEEEEEeCC---CCCEEEEee------CCCcEEEEECCCCceeEEeeecc-cC-----------
Q 008496          304 -NGDLKCTLSKH--KGPIFSLKWNK---KGDYLLTGS------CDKTAIVWDVKTEEWKQQFEFHS-GP-----------  359 (563)
Q Consensus       304 -~~~~~~~~~~h--~~~V~~l~~~~---~~~~l~s~s------~D~~v~iwd~~~~~~~~~~~~~~-~~-----------  359 (563)
                       .|+++..+...  ......+..+|   ++ .++.++      .++.|..||..+++.+-.+.... .+           
T Consensus       139 ~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~  217 (689)
T 1yiq_A          139 KTGQRAWSVDTRADHKRSYTITGAPRVVNG-KVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEI  217 (689)
T ss_dssp             TTCCEEEEEECCSCTTSCCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHH
T ss_pred             CCCCEeeeecCcCCCCCCccccCCcEEECC-EEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccc
Confidence             46665544321  11111111122   34 455443      37899999999999776654211 00           


Q ss_pred             ---------------------eEEEecCCCceEEEEeCCC-------------------eEEEEEcCCCcceeeecC--C
Q 008496          360 ---------------------TLDVDWRNNVSFATSSTDN-------------------MIYVCKIGENRPIKTFAG--H  397 (563)
Q Consensus       360 ---------------------~~~~~~~~~~~~~~~~~d~-------------------~i~~~~~~~~~~~~~~~~--h  397 (563)
                                           ...++-. ...+..+..++                   .|+.+|..+++.+-.+..  |
T Consensus       218 ~~~~~~g~~w~~~~~g~~~w~~~~~d~~-~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~  296 (689)
T 1yiq_A          218 AAKTWFGDAYVEQGGGGTAWDSFAYDPE-LNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPG  296 (689)
T ss_dssp             HHTTCCSSTHHHHCEECCCCSCEEEETT-TTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTT
T ss_pred             cccccCCceeeecCCCCccccceeEcCC-CCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCc
Confidence                                 0111111 23344444443                   488999988887766653  2


Q ss_pred             C-------cceeEEEECCCCC---EEEEEeCCCcEEEEeCCCCceeeeecccC-CCEE----------------------
Q 008496          398 Q-------GEVNCVKWDPTGS---LLASCSDDVTAKIWNMKQDKYVHDLREHS-KEIY----------------------  444 (563)
Q Consensus       398 ~-------~~i~~~~~~~~~~---~las~s~dg~i~iwd~~~~~~~~~~~~~~-~~i~----------------------  444 (563)
                      .       ..+.......+|+   .++.++.+|.++++|..+++.+....... ....                      
T Consensus       297 d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~  376 (689)
T 1yiq_A          297 DAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNG  376 (689)
T ss_dssp             CCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSS
T ss_pred             ccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCC
Confidence            1       1222222233565   78899999999999999998764322110 0000                      


Q ss_pred             ----------------EEEEccCCCCCCCCCCcEEEEEEe----------------------------------------
Q 008496          445 ----------------TIRWSPTGSGTNNPNQQLILASAS----------------------------------------  468 (563)
Q Consensus       445 ----------------~~~~~p~~~~~~~~~~~~~l~s~s----------------------------------------  468 (563)
                                      .++++|.        ..++++...                                        
T Consensus       377 ~~~~~~p~~~Gg~~w~~~a~dp~--------~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~  448 (689)
T 1yiq_A          377 KRNLVTPAFWGAHDWQPMSYNPD--------TGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLE  448 (689)
T ss_dssp             SCEEESSCTTCSSCSSCCEEETT--------TTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHH
T ss_pred             CeeEeCCCcccccCCCcceECCC--------CCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCC
Confidence                            0222222        222222111                                        


Q ss_pred             ----CCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEecCCCE--EEEEEcC
Q 008496          469 ----FDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGI--FEVCWNK  542 (563)
Q Consensus       469 ----~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~~~~i--~~l~w~~  542 (563)
                          .+|.|+.||+.+|+.++.+..+ .++....++..|.+++.|+.||.|+.||.++|+++..+....++  .-+.|..
T Consensus       449 ~~~~~~g~l~A~D~~tG~~~W~~~~~-~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~  527 (689)
T 1yiq_A          449 MAKSWSGKLIAWDPVKQQAAWEVPYV-TIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSV  527 (689)
T ss_dssp             HHTTCEEEEEEEETTTTEEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEE
T ss_pred             CCCCcceeEEEEECCCCCeEeEccCC-CCccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEE
Confidence                1488999999999999988754 34444566778889999999999999999999999998765443  3477889


Q ss_pred             CCC-EEEEEE
Q 008496          543 EGD-KIAACF  551 (563)
Q Consensus       543 ~g~-~la~~~  551 (563)
                      +|+ ++++..
T Consensus       528 ~G~qyv~~~~  537 (689)
T 1yiq_A          528 DGEQYVTFMA  537 (689)
T ss_dssp             TTEEEEEEEE
T ss_pred             CCEEEEEEEe
Confidence            997 444443

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.21  E-value=1e-09  Score=107.23  Aligned_cols=295  Identities=14%  Similarity=0.078  Sum_probs=182.1

Q ss_pred             ECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEEeCCCeEEEEE
Q 008496          223 WSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWS  302 (563)
Q Consensus       223 ~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~  302 (563)
                      ...++. |..|+.++.+..|| .++.....             ..    .....+.++...++|.++ .++.+  +..++
T Consensus        27 ~d~~g~-l~v~t~~~~l~~~d-~~g~~~~~-------------~~----~~~~~~~~~~~~~~g~l~-v~t~~--l~~~d   84 (330)
T 3hxj_A           27 LAKNGT-IYLGSSNKNLYAIN-TDGSVKWF-------------FK----SGEIIECRPSIGKDGTIY-FGSDK--VYAIN   84 (330)
T ss_dssp             ECTTSC-EECSSTTTTTEEEC-TTSCEEES-------------SC----GGGEEEECCEETTTTEEC-CSSCE--EEEEC
T ss_pred             EccCCe-EEEEcCCCEEEEEC-CCCcEEEE-------------Ee----cCCCcccceEEecCCcEE-EecCc--EEEEC
Confidence            334444 45566778888888 55432110             00    011234566666677544 44444  88888


Q ss_pred             cCCceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecCCCceEEEEeCCCeEEE
Q 008496          303 TNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYV  382 (563)
Q Consensus       303 ~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~  382 (563)
                      .++.....+.............  +..+..++.++.+..+|.. ++....+......+..+....+..+..++.++.++.
T Consensus        85 ~~g~~~~~~~~~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~l~vgt~~~~l~~  161 (330)
T 3hxj_A           85 PDGTEKWRFDTKKAIVSDFTIF--EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGTIYVGSNDNYLYA  161 (330)
T ss_dssp             CCGGGGGGSCC-----CCEEEE--TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSCEEEECTTSEEEE
T ss_pred             CCCcEEEEEECCCCcccCceEE--CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCEEEEEcCCCEEEE
Confidence            7665543333222222222222  5567888889999999988 665554443333333333333455666777889999


Q ss_pred             EEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcE
Q 008496          383 CKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQL  462 (563)
Q Consensus       383 ~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~  462 (563)
                      ++.. ++.+..+......+.++...+++.+.+..   +.+..|| .+++....+......+.++...+++.         
T Consensus       162 ~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v~t---~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~---------  227 (330)
T 3hxj_A          162 INPD-GTEKWRFKTNDAITSAASIGKDGTIYFGS---DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGT---------  227 (330)
T ss_dssp             ECTT-SCEEEEEECSSCCCSCCEECTTCCEEEES---SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSC---------
T ss_pred             ECCC-CCEeEEEecCCCceeeeEEcCCCEEEEEe---CEEEEEC-CCCcEEEEEccCCcceeceEECCCCe---------
Confidence            9887 66655555555667788888888866544   7899999 66666555554445566666665542         


Q ss_pred             EEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEecC-CCEEEEEEc
Q 008496          463 ILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGN-GGIFEVCWN  541 (563)
Q Consensus       463 ~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~~-~~i~~l~w~  541 (563)
                       |..++.++.|..+|. +++.+..+......+.++.+.++|. |..|+.+|.|..+|. +++.+..+... ..+.++..+
T Consensus       228 -l~v~t~~~gl~~~~~-~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d  303 (330)
T 3hxj_A          228 -IYVTSLDGHLYAINP-DGTEKWRFKTGKRIESSPVIGNTDT-IYFGSYDGHLYAINP-DGTEKWNFETGSWIIATPVID  303 (330)
T ss_dssp             -EEEEETTTEEEEECT-TSCEEEEEECSSCCCSCCEECTTSC-EEEECTTCEEEEECT-TSCEEEEEECSSCCCSCCEEC
T ss_pred             -EEEEcCCCeEEEECC-CCCEeEEeeCCCCccccceEcCCCe-EEEecCCCCEEEECC-CCcEEEEEEcCCccccceEEc
Confidence             455677888988874 5666666654444445566666665 556778888999996 77777766543 335567777


Q ss_pred             CCCCEEEEEECCCeEEEEEe
Q 008496          542 KEGDKIAACFANHTVCVLDF  561 (563)
Q Consensus       542 ~~g~~la~~~~~~~v~v~~~  561 (563)
                      ++|+ |.++..+|.+.+...
T Consensus       304 ~~g~-l~~gt~~G~~~~~~~  322 (330)
T 3hxj_A          304 ENGT-IYFGTRNGKFYALFN  322 (330)
T ss_dssp             TTCC-EEEECTTSCEEEEEC
T ss_pred             CCCE-EEEEcCCCeEEEEec
Confidence            8886 455778888887654

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.21  E-value=1.8e-09  Score=115.98  Aligned_cols=269  Identities=10%  Similarity=0.042  Sum_probs=174.3

Q ss_pred             CCEEEEEeCCCeEEEEEc-CCceeEeeccCCC----------CE-EEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEe
Q 008496          286 GTLLATGSYDGQARIWST-NGDLKCTLSKHKG----------PI-FSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQF  353 (563)
Q Consensus       286 g~~l~sg~~dg~i~vw~~-~~~~~~~~~~h~~----------~V-~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~  353 (563)
                      +..+++++.++.|..+|. .|+.+..+.....          .+ .++..  .+..++.++.|+.|..+|..+++.+-.+
T Consensus        77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~~~W~~  154 (677)
T 1kb0_A           77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAATGKEVWHQ  154 (677)
T ss_dssp             TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCCCCEEeee
Confidence            445666667778888885 3555444332211          00 11222  4568888999999999999999987766


Q ss_pred             eec-c----cCeE-EEecCCCceEEEEe-----CCCeEEEEEcCCCcceeeecCCCc-----------------------
Q 008496          354 EFH-S----GPTL-DVDWRNNVSFATSS-----TDNMIYVCKIGENRPIKTFAGHQG-----------------------  399 (563)
Q Consensus       354 ~~~-~----~~~~-~~~~~~~~~~~~~~-----~d~~i~~~~~~~~~~~~~~~~h~~-----------------------  399 (563)
                      ... .    ..+. .....++..++.++     .++.|+.+|..+++.+-.+.....                       
T Consensus       155 ~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~  234 (677)
T 1kb0_A          155 NTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGK  234 (677)
T ss_dssp             ETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGC
T ss_pred             cCCcCcCcCcccccCcEEECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCc
Confidence            654 1    0010 00011333333333     268999999988877655532111                       


Q ss_pred             ---------ceeEEEECCCCCEEEEEeCCC-------------------cEEEEeCCCCceeeeecc--cC-------CC
Q 008496          400 ---------EVNCVKWDPTGSLLASCSDDV-------------------TAKIWNMKQDKYVHDLRE--HS-------KE  442 (563)
Q Consensus       400 ---------~i~~~~~~~~~~~las~s~dg-------------------~i~iwd~~~~~~~~~~~~--~~-------~~  442 (563)
                               ....++++|++.+|..++.++                   .|..+|.++++.+-.++.  |.       ..
T Consensus       235 ~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~  314 (677)
T 1kb0_A          235 WWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQP  314 (677)
T ss_dssp             HHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSC
T ss_pred             eeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCC
Confidence                     113578899999888887764                   489999999988765543  21       01


Q ss_pred             EEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCC-----------CCE-----------------
Q 008496          443 IYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHR-----------EPV-----------------  494 (563)
Q Consensus       443 i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~-----------~~i-----------------  494 (563)
                      ..-+....+|.      ...+++.++.+|.|+++|..+|+.+....-..           .++                 
T Consensus       315 p~l~~~~~dG~------~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~  388 (677)
T 1kb0_A          315 MILADIKIAGK------PRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPG  388 (677)
T ss_dssp             CEEEEEEETTE------EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSC
T ss_pred             cEEEecccCCc------EeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcC
Confidence            11111112221      01367889999999999999999987764211           111                 


Q ss_pred             -------EEEEEcCCCCEEEEEeC-------------------------------------------CCcEEEEecCCCe
Q 008496          495 -------YSLAFSPTGEYLASGSL-------------------------------------------DKSMHIWSLKEGK  524 (563)
Q Consensus       495 -------~~l~~spdg~~lasgs~-------------------------------------------dg~v~iw~~~~~~  524 (563)
                             ..++|+|++.++.+...                                           .|.|..||+.+|+
T Consensus       389 ~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~  468 (677)
T 1kb0_A          389 PYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQK  468 (677)
T ss_dssp             TTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTE
T ss_pred             cccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCc
Confidence                   15789999888776543                                           2789999999999


Q ss_pred             eEEEEecCCCEEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496          525 IVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLDFR  562 (563)
Q Consensus       525 ~~~~~~~~~~i~~l~w~~~g~~la~~~~~~~v~v~~~~  562 (563)
                      ++..+.....+.......+|..++++..++.+.+||.+
T Consensus       469 ~~W~~~~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~  506 (677)
T 1kb0_A          469 AAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYHAA  506 (677)
T ss_dssp             EEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETT
T ss_pred             EEeecCCCCCCcCcceEeCCCEEEEECCCCcEEEEECC
Confidence            99888765555555677788899999899999999864

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.19  E-value=3.4e-09  Score=114.13  Aligned_cols=269  Identities=11%  Similarity=0.054  Sum_probs=173.7

Q ss_pred             CCEEEEEeCCCeEEEEEc-CCceeEeeccCCC----------CE-EEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEe
Q 008496          286 GTLLATGSYDGQARIWST-NGDLKCTLSKHKG----------PI-FSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQF  353 (563)
Q Consensus       286 g~~l~sg~~dg~i~vw~~-~~~~~~~~~~h~~----------~V-~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~  353 (563)
                      +..+++++.++.|..+|. .|+.+..+..+..          .+ .++.  ..+..++.++.|+.|..+|..+++.+-.+
T Consensus        70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~--~~~g~v~v~~~dg~l~AlDa~TG~~~W~~  147 (689)
T 1yiq_A           70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVA--VWKGKVYVGVLDGRLEAIDAKTGQRAWSV  147 (689)
T ss_dssp             TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCE--EETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccE--EECCEEEEEccCCEEEEEECCCCCEeeee
Confidence            456677777888888886 4666555432211          00 0111  13567888999999999999999877665


Q ss_pred             eec-c-cCeEEE----ecCCCceEEEEe-----CCCeEEEEEcCCCcceeeecCC-------------------------
Q 008496          354 EFH-S-GPTLDV----DWRNNVSFATSS-----TDNMIYVCKIGENRPIKTFAGH-------------------------  397 (563)
Q Consensus       354 ~~~-~-~~~~~~----~~~~~~~~~~~~-----~d~~i~~~~~~~~~~~~~~~~h-------------------------  397 (563)
                      ... . .....+    ...++..++.++     .++.|+.+|..+++.+-.+..-                         
T Consensus       148 ~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w  227 (689)
T 1yiq_A          148 DTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAY  227 (689)
T ss_dssp             ECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTH
T ss_pred             cCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCcee
Confidence            542 1 000000    011333333332     3688999999888766554310                         


Q ss_pred             ------CcceeEEEECCCCCEEEEEeCCCc-------------------EEEEeCCCCceeeeecc--cC-------CCE
Q 008496          398 ------QGEVNCVKWDPTGSLLASCSDDVT-------------------AKIWNMKQDKYVHDLRE--HS-------KEI  443 (563)
Q Consensus       398 ------~~~i~~~~~~~~~~~las~s~dg~-------------------i~iwd~~~~~~~~~~~~--~~-------~~i  443 (563)
                            ......++++|+..+|+.++.++.                   |..||.++++.+-.++.  |.       .+.
T Consensus       228 ~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~  307 (689)
T 1yiq_A          228 VEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHM  307 (689)
T ss_dssp             HHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCE
T ss_pred             eecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCc
Confidence                  011135788999899999888764                   99999999998766543  21       111


Q ss_pred             EEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCC-CC-----------------------------
Q 008496          444 YTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHR-EP-----------------------------  493 (563)
Q Consensus       444 ~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~-~~-----------------------------  493 (563)
                      .......+|.      ...+++.++.+|.++++|.++|+.+....-.. ..                             
T Consensus       308 ~l~d~~~~G~------~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~  381 (689)
T 1yiq_A          308 ILAELPIDGK------PRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLV  381 (689)
T ss_dssp             EEEEEEETTE------EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEE
T ss_pred             EEEeeccCCc------EEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEe
Confidence            1111111221      01267889999999999999999885432110 00                             


Q ss_pred             ---------EEEEEEcCCCCEEEEEeC---------------------------------------------CCcEEEEe
Q 008496          494 ---------VYSLAFSPTGEYLASGSL---------------------------------------------DKSMHIWS  519 (563)
Q Consensus       494 ---------i~~l~~spdg~~lasgs~---------------------------------------------dg~v~iw~  519 (563)
                               -..++|+|+..++++.+.                                             +|.|..||
T Consensus       382 ~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D  461 (689)
T 1yiq_A          382 TPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWD  461 (689)
T ss_dssp             SSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEE
T ss_pred             CCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEE
Confidence                     112789998887776532                                             37899999


Q ss_pred             cCCCeeEEEEecCCCEEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496          520 LKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLDFR  562 (563)
Q Consensus       520 ~~~~~~~~~~~~~~~i~~l~w~~~g~~la~~~~~~~v~v~~~~  562 (563)
                      +.+|+++..+.....+..-.+...|..|++|..|+.+.+||.+
T Consensus       462 ~~tG~~~W~~~~~~~~~~g~~~tagglvf~gt~dg~l~a~D~~  504 (689)
T 1yiq_A          462 PVKQQAAWEVPYVTIFNGGTLSTAGNLVFEGSADGRVIAYAAD  504 (689)
T ss_dssp             TTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETT
T ss_pred             CCCCCeEeEccCCCCccCccceECCCEEEEECCCCcEEEEECC
Confidence            9999999888765555444667788899999999999999864

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.19  E-value=1.3e-09  Score=107.41  Aligned_cols=246  Identities=7%  Similarity=-0.060  Sum_probs=155.5

Q ss_pred             EEEECCCCCEEEEEe----------CCCeEEEEEcCC-ceeEeeccC-------CCCEEEEEeCCCCCEEEEeeC--CCc
Q 008496          279 TLDWNGEGTLLATGS----------YDGQARIWSTNG-DLKCTLSKH-------KGPIFSLKWNKKGDYLLTGSC--DKT  338 (563)
Q Consensus       279 ~l~~s~~g~~l~sg~----------~dg~i~vw~~~~-~~~~~~~~h-------~~~V~~l~~~~~~~~l~s~s~--D~~  338 (563)
                      .+.++|||++++++.          .++.|.+||... +...++...       ......+.++|+|++++.+..  ...
T Consensus        69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~  148 (368)
T 1mda_H           69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAA  148 (368)
T ss_dssp             EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCE
T ss_pred             ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCe
Confidence            699999999998886          368899999764 455555322       122457899999999998874  467


Q ss_pred             EEE--EECCCCceeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCC-----Cccee----eecCCCcceeEEEEC
Q 008496          339 AIV--WDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGE-----NRPIK----TFAGHQGEVNCVKWD  407 (563)
Q Consensus       339 v~i--wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~-----~~~~~----~~~~h~~~i~~~~~~  407 (563)
                      +.+  +|+.+   +..+.... . ..+.......|++.+.|+.+.+.++..     ++.+.    .+.-...+.   . .
T Consensus       149 v~V~~iD~~t---v~~i~v~~-~-~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~  219 (368)
T 1mda_H          149 AGLSVPGASD---DQLTKSAS-C-FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-A  219 (368)
T ss_dssp             EEEEETTTEE---EEEEECSS-C-CCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-E
T ss_pred             EEEEEEchhh---ceEEECCC-c-eEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-c
Confidence            888  99877   33332211 1 112223344566667788877777765     22211    011112222   3 5


Q ss_pred             CCCCEEEEEeCCCcEEEEeCCCCc--eeeeecc-------cC---CCEEEEEEccCCCCCCCCCCcEEEEEEe---C---
Q 008496          408 PTGSLLASCSDDVTAKIWNMKQDK--YVHDLRE-------HS---KEIYTIRWSPTGSGTNNPNQQLILASAS---F---  469 (563)
Q Consensus       408 ~~~~~las~s~dg~i~iwd~~~~~--~~~~~~~-------~~---~~i~~~~~~p~~~~~~~~~~~~~l~s~s---~---  469 (563)
                      +++..++..+. +.+.+.|..+..  .+..+..       +.   .....+.++|++.        .++++..   .   
T Consensus       220 ~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~--------~lyV~~~~~~~~~~  290 (368)
T 1mda_H          220 NYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTD--------GIMILTVEHSRSCL  290 (368)
T ss_dssp             TTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTT--------EEEEEEEECSSCTT
T ss_pred             ccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCC--------EEEEEeccccCccc
Confidence            55665555556 899999986432  2222211       00   1111156777764        2333333   2   


Q ss_pred             --CCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCC-EEEEEe-CCCcEEEEecCCCeeEEEEecCCCEEEEEEcCC
Q 008496          470 --DSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGE-YLASGS-LDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKE  543 (563)
Q Consensus       470 --dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~-~lasgs-~dg~v~iw~~~~~~~~~~~~~~~~i~~l~w~~~  543 (563)
                        ++.+.++|+.+++.+..+.... ....++|+|||+ .+++.. .++.|.++|+.++++++++........+++.+.
T Consensus       291 ~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg~~P~~i~~~~~  367 (368)
T 1mda_H          291 AAAENTSSVTASVGQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKGPESLSVQNE  367 (368)
T ss_dssp             SCEEEEEEEESSSCCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSCCCEEECCCC
T ss_pred             ccCCCEEEEECCCCeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECCCCCCEEEeecC
Confidence              2356699999999888775433 468899999997 456666 599999999999999999887666667766543

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.15  E-value=2.7e-11  Score=120.63  Aligned_cols=203  Identities=13%  Similarity=0.093  Sum_probs=119.8

Q ss_pred             CCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEec-CCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcc-ee-
Q 008496          326 KGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDW-RNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGE-VN-  402 (563)
Q Consensus       326 ~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~-i~-  402 (563)
                      ++..+++++.|+.|..||..+++.+-.+..  +++..... .++..+++++.|+.|+.|+..+++.+..+..+... +. 
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~   85 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQA   85 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTT
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccccc
Confidence            467899999999999999999998877665  33332222 23446677789999999999777665555433211 11 


Q ss_pred             EEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCe
Q 008496          403 CVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK  482 (563)
Q Consensus       403 ~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~  482 (563)
                      +..+. .+..|++|+.|+.++.||..+++.+..+..+..    ..++|.+         ..+++++.|+.|+.||.++|+
T Consensus        86 sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~~----~~~~p~~---------~~v~~~~~dg~v~a~d~~tG~  151 (369)
T 2hz6_A           86 SPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAFA----DSLSPST---------SLLYLGRTEYTITMYDTKTRE  151 (369)
T ss_dssp             CSCC------CCCCEEEEEEEEECCC-----------------------------------EEEEEEEEEEECCCSSSSS
T ss_pred             CceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCCc----ccccccC---------CEEEEEecCCEEEEEECCCCC
Confidence            11111 345677888999999999999988766654431    2334432         256778889999999999998


Q ss_pred             EEEEecCCCCCEEEEEEcCCC---CEEEEEeCCCcEEEEecCCCeeEEEEecCCCEE-EEEEcCCCCE
Q 008496          483 LLYSLNGHREPVYSLAFSPTG---EYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIF-EVCWNKEGDK  546 (563)
Q Consensus       483 ~~~~~~~h~~~i~~l~~spdg---~~lasgs~dg~v~iw~~~~~~~~~~~~~~~~i~-~l~w~~~g~~  546 (563)
                      .++.+..+.  ....++++++   ..+++++.||.|..||..+|+++..+.....+. ...++++|..
T Consensus       152 ~~W~~~~~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~pv~~~~~~~~dg~~  217 (369)
T 2hz6_A          152 LRWNATYFD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNYASPVVAFYVWQREGLR  217 (369)
T ss_dssp             CCCEEEEEE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEECSSCEEEEEECTTSSCE
T ss_pred             EEEeEeccc--ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecCCCceEEEEEecCCceE
Confidence            876654221  1223344432   567778999999999999999998887655554 3456667653

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.05  E-value=4.2e-07  Score=85.77  Aligned_cols=248  Identities=11%  Similarity=-0.000  Sum_probs=149.8

Q ss_pred             CEEEEEeCCCeEEEEEcCCceeE------eeccCCCCEEEEEeCCCCCEEEEe-eCCCcEEEEECCCCceeEEeeecccC
Q 008496          287 TLLATGSYDGQARIWSTNGDLKC------TLSKHKGPIFSLKWNKKGDYLLTG-SCDKTAIVWDVKTEEWKQQFEFHSGP  359 (563)
Q Consensus       287 ~~l~sg~~dg~i~vw~~~~~~~~------~~~~h~~~V~~l~~~~~~~~l~s~-s~D~~v~iwd~~~~~~~~~~~~~~~~  359 (563)
                      .+|+.+.. +.|+.++.++....      .+......+.+++|++++..|+.+ ...+.|..+++.+......+......
T Consensus         2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~   80 (267)
T 1npe_A            2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGS   80 (267)
T ss_dssp             EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCC
T ss_pred             cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCC
Confidence            34444443 47888887765321      122122346789999977666544 45689999998765443322211122


Q ss_pred             e--EEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEE-EEEeC--CCcEEEEeCCCCceee
Q 008496          360 T--LDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLL-ASCSD--DVTAKIWNMKQDKYVH  434 (563)
Q Consensus       360 ~--~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l-as~s~--dg~i~iwd~~~~~~~~  434 (563)
                      .  +.+++.....+++....+.|.+++...................++++|++..| ++...  .+.|..+++.......
T Consensus        81 p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~  160 (267)
T 1npe_A           81 PEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRI  160 (267)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEE
T ss_pred             ccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEE
Confidence            3  33445556667777778889998886543222222222457899999965554 44433  4678888876433211


Q ss_pred             eecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCc
Q 008496          435 DLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKS  514 (563)
Q Consensus       435 ~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~  514 (563)
                      ...........++++|++.        .+.++-...+.|..+|.........+.+... ...++.. .+..+++....+.
T Consensus       161 ~~~~~~~~P~gia~d~~~~--------~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~-P~gi~~d-~~~lyva~~~~~~  230 (267)
T 1npe_A          161 LAQDNLGLPNGLTFDAFSS--------QLCWVDAGTHRAECLNPAQPGRRKVLEGLQY-PFAVTSY-GKNLYYTDWKTNS  230 (267)
T ss_dssp             EECTTCSCEEEEEEETTTT--------EEEEEETTTTEEEEEETTEEEEEEEEECCCS-EEEEEEE-TTEEEEEETTTTE
T ss_pred             EEECCCCCCcEEEEcCCCC--------EEEEEECCCCEEEEEecCCCceEEEecCCCC-ceEEEEe-CCEEEEEECCCCe
Confidence            1112224567889988653        3556666778999999975443333333222 3566654 3344444445689


Q ss_pred             EEEEecCCCeeEEEEecCC--CEEEEEEcCCCC
Q 008496          515 MHIWSLKEGKIVKTYTGNG--GIFEVCWNKEGD  545 (563)
Q Consensus       515 v~iw~~~~~~~~~~~~~~~--~i~~l~w~~~g~  545 (563)
                      |.+++..+++.+.++....  ..+.+++.|++.
T Consensus       231 v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~~  263 (267)
T 1npe_A          231 VIAMDLAISKEMDTFHPHKQTRLYGITIALSQC  263 (267)
T ss_dssp             EEEEETTTTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred             EEEEeCCCCCceEEEccccccccceeeecCccC
Confidence            9999999999988886433  467888888874

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.05  E-value=1.3e-07  Score=94.27  Aligned_cols=259  Identities=8%  Similarity=0.035  Sum_probs=161.3

Q ss_pred             CCEEEEEeCCCeEEEEEcC-CceeEeeccC---------CCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeee
Q 008496          286 GTLLATGSYDGQARIWSTN-GDLKCTLSKH---------KGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEF  355 (563)
Q Consensus       286 g~~l~sg~~dg~i~vw~~~-~~~~~~~~~h---------~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~  355 (563)
                      +..+++++.++.|..+|.. |+........         ...+.+. ....+..++.++.++.|..+|..+++..-.+..
T Consensus        53 ~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~  131 (376)
T 3q7m_A           53 DNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGG-VTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKV  131 (376)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEE-EEEETTEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred             CCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccC-ceEeCCEEEEEcCCCEEEEEECCCCCEEEEEeC
Confidence            5677788888999999974 6655444331         1223221 122456788889999999999999987665544


Q ss_pred             cccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcce-----eEEEECCCCCEEEEEeCCCcEEEEeCCCC
Q 008496          356 HSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEV-----NCVKWDPTGSLLASCSDDVTAKIWNMKQD  430 (563)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i-----~~~~~~~~~~~las~s~dg~i~iwd~~~~  430 (563)
                      .......... .+..++.++.++.++.++..+++.+..+.......     ......  +..++.++.++.+..+|..++
T Consensus       132 ~~~~~~~p~~-~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~~d~~tG  208 (376)
T 3q7m_A          132 AGEALSRPVV-SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSAVLMEQG  208 (376)
T ss_dssp             SSCCCSCCEE-ETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCTTTEEEEEETTTC
T ss_pred             CCceEcCCEE-ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEEEECCCC
Confidence            3221111111 23456667788999999988877665554322111     112222  346777888999999999988


Q ss_pred             ceeeeecccCCC----EEE---EEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCC
Q 008496          431 KYVHDLREHSKE----IYT---IRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTG  503 (563)
Q Consensus       431 ~~~~~~~~~~~~----i~~---~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg  503 (563)
                      +.+.........    +..   +.-.|.     ..++  .+..++.++.|..+|..+|+.++....  .....+..  ++
T Consensus       209 ~~~w~~~~~~~~~~~~~~~~~~~~~~p~-----~~~~--~v~~~~~~g~l~~~d~~tG~~~w~~~~--~~~~~~~~--~~  277 (376)
T 3q7m_A          209 QMIWQQRISQATGSTEIDRLSDVDTTPV-----VVNG--VVFALAYNGNLTALDLRSGQIMWKREL--GSVNDFIV--DG  277 (376)
T ss_dssp             CEEEEEECCC-----------CCCCCCE-----EETT--EEEEECTTSCEEEEETTTCCEEEEECC--CCEEEEEE--ET
T ss_pred             cEEEEEecccCCCCcccccccccCCCcE-----EECC--EEEEEecCcEEEEEECCCCcEEeeccC--CCCCCceE--EC
Confidence            876554322110    000   000010     0011  356677899999999999999887653  23444444  46


Q ss_pred             CEEEEEeCCCcEEEEecCCCeeEEEEec-CC-CEEEEEEcCCCCEEEEEECCCeEEEEEe
Q 008496          504 EYLASGSLDKSMHIWSLKEGKIVKTYTG-NG-GIFEVCWNKEGDKIAACFANHTVCVLDF  561 (563)
Q Consensus       504 ~~lasgs~dg~v~iw~~~~~~~~~~~~~-~~-~i~~l~w~~~g~~la~~~~~~~v~v~~~  561 (563)
                      ..|..++.++.|..+|..+|+.+..... .. .+..+..  .+..|.++..+|.+.++|.
T Consensus       278 ~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~  335 (376)
T 3q7m_A          278 NRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVL--YNGNLVVGDSEGYLHWINV  335 (376)
T ss_dssp             TEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEE--ETTEEEEECTTSEEEEEET
T ss_pred             CEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEE--ECCEEEEEeCCCeEEEEEC
Confidence            6778888899999999999998877652 11 1222222  2567888888888888875

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.98  E-value=2.4e-08  Score=98.35  Aligned_cols=220  Identities=8%  Similarity=-0.067  Sum_probs=136.5

Q ss_pred             cEEEEECCCCceeEEeeecccCeEEEecCCCceEEEEe---------CCCeEEEEEcCCCcceeeecCC-------Ccce
Q 008496          338 TAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSS---------TDNMIYVCKIGENRPIKTFAGH-------QGEV  401 (563)
Q Consensus       338 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~d~~i~~~~~~~~~~~~~~~~h-------~~~i  401 (563)
                      +|.+.|..+++.+..+.....+-+.+.+.....+++..         .++.|.++|..+.+.+.++...       ....
T Consensus        47 ~vsvID~~t~~v~~~i~vG~~P~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P  126 (368)
T 1mda_H           47 ENWVSCAGCGVTLGHSLGAFLSLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRV  126 (368)
T ss_dssp             EEEEEETTTTEEEEEEEECTTCEEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCT
T ss_pred             eEEEEECCCCeEEEEEeCCCCCceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCc
Confidence            88899999999999888776664444444445555542         4688999999999988887532       1235


Q ss_pred             eEEEECCCCCEEEEEeC--CCcEEE--EeCCCCceeeeeccc------------------CCCEEEEEEcc----CCCCC
Q 008496          402 NCVKWDPTGSLLASCSD--DVTAKI--WNMKQDKYVHDLREH------------------SKEIYTIRWSP----TGSGT  455 (563)
Q Consensus       402 ~~~~~~~~~~~las~s~--dg~i~i--wd~~~~~~~~~~~~~------------------~~~i~~~~~~p----~~~~~  455 (563)
                      ..++++|||++++.+..  +..+.+  +|..+   +..+...                  .+.+..+....    ++...
T Consensus       127 ~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~  203 (368)
T 1mda_H          127 HIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVG  203 (368)
T ss_dssp             TSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECC
T ss_pred             ceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEE
Confidence            57999999999988864  457888  98866   2222110                  01111111111    00000


Q ss_pred             ------C--------CCCCcEEEEEEeCCCeEEEEeCCCCe--EEEEecC-------CC---CCEEEEEEcCCCCEEEEE
Q 008496          456 ------N--------NPNQQLILASASFDSTVKLWDVELGK--LLYSLNG-------HR---EPVYSLAFSPTGEYLASG  509 (563)
Q Consensus       456 ------~--------~~~~~~~l~s~s~dg~i~iwd~~~~~--~~~~~~~-------h~---~~i~~l~~spdg~~lasg  509 (563)
                            .        .+....++ ..+. +.|.+.|+..+.  .+..+.-       +.   .....++|+|||+.+..+
T Consensus       204 ~~~t~~i~vg~~P~~~~~~~~~~-~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~  281 (368)
T 1mda_H          204 AQCTGAQNCSSQAAQANYPGMLV-WAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMIL  281 (368)
T ss_dssp             CCSCTTSCBCSCCEEETTTTEEE-ECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEE
T ss_pred             EEeeeeeeCCCCccccccCCEEE-EEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEE
Confidence                  0        01111112 2223 667777765432  2221110       00   111126899999887765


Q ss_pred             eC---------CCcEEEEecCCCeeEEEEecCCCEEEEEEcCCCCE-EEEEE-CCCeEEEEEee
Q 008496          510 SL---------DKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDK-IAACF-ANHTVCVLDFR  562 (563)
Q Consensus       510 s~---------dg~v~iw~~~~~~~~~~~~~~~~i~~l~w~~~g~~-la~~~-~~~~v~v~~~~  562 (563)
                      ..         ++.+.++|+.++++++.+........++|+|||++ ++++. .+++|.|||.+
T Consensus       282 ~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~  345 (368)
T 1mda_H          282 TVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAA  345 (368)
T ss_dssp             EEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEETTTTEEEEEESS
T ss_pred             eccccCcccccCCCEEEEECCCCeEEEEEECCCCcceEEECCCCCEEEEEccCCCCeEEEEECC
Confidence            32         23567999999999988876667889999999984 55555 58999999975

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.95  E-value=1.1e-08  Score=99.90  Aligned_cols=253  Identities=14%  Similarity=0.066  Sum_probs=157.4

Q ss_pred             CCCCCEEEEEeCCCeEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEE
Q 008496          283 NGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLD  362 (563)
Q Consensus       283 s~~g~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~  362 (563)
                      ..+|. +..++.++.+..|+.++........+...+.++...++|. |..++.+  +..+|. +++....+.........
T Consensus        28 d~~g~-l~v~t~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~~~~~~~~~~~~~~  102 (330)
T 3hxj_A           28 AKNGT-IYLGSSNKNLYAINTDGSVKWFFKSGEIIECRPSIGKDGT-IYFGSDK--VYAINP-DGTEKWRFDTKKAIVSD  102 (330)
T ss_dssp             CTTSC-EECSSTTTTTEEECTTSCEEESSCGGGEEEECCEETTTTE-ECCSSCE--EEEECC-CGGGGGGSCC-----CC
T ss_pred             ccCCe-EEEEcCCCEEEEECCCCcEEEEEecCCCcccceEEecCCc-EEEecCc--EEEECC-CCcEEEEEECCCCcccC
Confidence            34554 5566778888888866666555444444556677766664 5555544  888886 55433322222111111


Q ss_pred             EecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccCCC
Q 008496          363 VDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKE  442 (563)
Q Consensus       363 ~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~  442 (563)
                      .... +..+..++.++.++.++.. ++....+..+...+.++...+++.+ ..++.++.|..||.. ++.+..+......
T Consensus       103 ~~~~-~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~l-~vgt~~~~l~~~d~~-g~~~~~~~~~~~~  178 (330)
T 3hxj_A          103 FTIF-EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGTI-YVGSNDNYLYAINPD-GTEKWRFKTNDAI  178 (330)
T ss_dssp             EEEE-TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSCE-EEECTTSEEEEECTT-SCEEEEEECSSCC
T ss_pred             ceEE-CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCEE-EEEcCCCEEEEECCC-CCEeEEEecCCCc
Confidence            1111 4556667778888888877 5555555555555677778878875 457778999999988 6665555444444


Q ss_pred             EEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCC
Q 008496          443 IYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKE  522 (563)
Q Consensus       443 i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~  522 (563)
                      +.++...+++.          |..++  +.|..+| .+++.+.........+.++...++|.+.+ ++.++.|..++. +
T Consensus       179 ~~~~~~d~~g~----------l~v~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v-~t~~~gl~~~~~-~  243 (330)
T 3hxj_A          179 TSAASIGKDGT----------IYFGS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGTIYV-TSLDGHLYAINP-D  243 (330)
T ss_dssp             CSCCEECTTCC----------EEEES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSCEEE-EETTTEEEEECT-T
T ss_pred             eeeeEEcCCCE----------EEEEe--CEEEEEC-CCCcEEEEEccCCcceeceEECCCCeEEE-EcCCCeEEEECC-C
Confidence            44455444432          33344  7899999 77888877766666788889998886544 667788888874 5


Q ss_pred             CeeEEEEecCCC-EEEEEEcCCCCEEEEEECCCeEEEEE
Q 008496          523 GKIVKTYTGNGG-IFEVCWNKEGDKIAACFANHTVCVLD  560 (563)
Q Consensus       523 ~~~~~~~~~~~~-i~~l~w~~~g~~la~~~~~~~v~v~~  560 (563)
                      ++.+..+..... +..+..+++|. |.++..++.+..+|
T Consensus       244 g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~ggl~~~d  281 (330)
T 3hxj_A          244 GTEKWRFKTGKRIESSPVIGNTDT-IYFGSYDGHLYAIN  281 (330)
T ss_dssp             SCEEEEEECSSCCCSCCEECTTSC-EEEECTTCEEEEEC
T ss_pred             CCEeEEeeCCCCccccceEcCCCe-EEEecCCCCEEEEC
Confidence            666666654333 33455666664 55566676777765

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.95  E-value=2.1e-05  Score=86.50  Aligned_cols=309  Identities=9%  Similarity=0.071  Sum_probs=193.1

Q ss_pred             eEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEEeCCCe
Q 008496          218 VCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQ  297 (563)
Q Consensus       218 V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~dg~  297 (563)
                      |.++...+++.+.+ |+.++-+..|+..++...              ....  ......|.++...++|.+.+ |+.++-
T Consensus       175 i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~--------------~~~~--~~~~~~i~~i~~d~~g~lwi-gt~~~G  236 (795)
T 4a2l_A          175 IASTLYRQGDQIYI-GTSTDGLYTYSITQKTFE--------------KVIP--ILGTKQIQAILQQSPTRIWV-ATEGAG  236 (795)
T ss_dssp             CEEEEEEETTEEEE-EESSSCEEEEETTTCCEE--------------ECC------CCCEEEEEEEETTEEEE-EEBSSC
T ss_pred             eEEEEECCCCCEEE-EECCCCEEEEeCCCCeEE--------------EecC--CCCCCeeEEEEEcCCCCEEE-EECCCC
Confidence            78888887877665 555445777886543211              0000  01235688888888877555 454445


Q ss_pred             EEEEEcCCceeEeecc--------CCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeee-------cccCeEE
Q 008496          298 ARIWSTNGDLKCTLSK--------HKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEF-------HSGPTLD  362 (563)
Q Consensus       298 i~vw~~~~~~~~~~~~--------h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~-------~~~~~~~  362 (563)
                      +.+|+........+..        ....|.++...++|...+. +.+ -|.+||..++.+......       ....+.+
T Consensus       237 l~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWig-t~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~  314 (795)
T 4a2l_A          237 LFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWIG-TFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRS  314 (795)
T ss_dssp             EEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEEE-ESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEE
T ss_pred             eEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEEE-eCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEE
Confidence            8888876543333321        1356999999888875554 444 588999887765432211       1234566


Q ss_pred             EecCCCceEEEEeCCCeEEEEEcCCCcceeeecC-------CCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeee
Q 008496          363 VDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAG-------HQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHD  435 (563)
Q Consensus       363 ~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~-------h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~  435 (563)
                      +....+..+..++.++-|..++..... ...+..       ....|.++..+++|.+. .|+.++-|..|+..++...+-
T Consensus       315 i~~D~~g~lWigt~~~Gl~~~~~~~~~-~~~~~~~~~~~~l~~~~V~~i~~d~~g~lW-iGt~~~Gl~~~~~~~~~~~~~  392 (795)
T 4a2l_A          315 IFMDSQGGMWLGTYFGGLNYYHPIRNR-FKNIRNIPYKNSLSDNVVSCIVEDKDKNLW-IGTNDGGLNLYNPITQRFTSY  392 (795)
T ss_dssp             EEECTTSCEEEEESSSCEEEECGGGGS-SEEECCCTTSSSCSCSSEEEEEECTTSCEE-EEESSSCEEEECTTTCCEEEE
T ss_pred             EEEeCCcCEEEEECCCCeEEeCCCccc-ceEEcCCCCCCCCCCCeeEEEEECCCCCEE-EEECCCCeEEEcCCCCcEEEE
Confidence            655555566666666677777654332 122211       23468999999888765 577777799999877654332


Q ss_pred             ecc--------cCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEec----CCCCCEEEEEEcCCC
Q 008496          436 LRE--------HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLN----GHREPVYSLAFSPTG  503 (563)
Q Consensus       436 ~~~--------~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~----~h~~~i~~l~~spdg  503 (563)
                      ...        ....|.++...+++.         +|-.|+.++-|.+||..+++......    .....|.++...++|
T Consensus       393 ~~~~~~~~~~l~~~~v~~i~~d~~g~---------~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g  463 (795)
T 4a2l_A          393 TLQEDESARGIGSNNIKAVYVDEKKS---------LVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEG  463 (795)
T ss_dssp             CCC------CCSCSCEEEEEEETTTT---------EEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSS
T ss_pred             ecCCCCcccCCCCccEEEEEEcCCCC---------EEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCC
Confidence            111        235688888766552         25567777789999998876543322    124579999999999


Q ss_pred             CEEEEEeCCCcEEEEecCCCeeEEEEec-------CCCEEEEEEcCCCCEEEEEECCCeEEEEEe
Q 008496          504 EYLASGSLDKSMHIWSLKEGKIVKTYTG-------NGGIFEVCWNKEGDKIAACFANHTVCVLDF  561 (563)
Q Consensus       504 ~~lasgs~dg~v~iw~~~~~~~~~~~~~-------~~~i~~l~w~~~g~~la~~~~~~~v~v~~~  561 (563)
                      .+.+.. .+| |.+|+..+++.......       ...|.++..+++|...++.. + .+.++|.
T Consensus       464 ~lwigt-~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~-Gl~~~~~  524 (795)
T 4a2l_A          464 NLWLGT-LSA-LVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-E-GLSVFKQ  524 (795)
T ss_dssp             CEEEEE-SSC-EEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES-S-CEEEEEE
T ss_pred             CEEEEe-cCc-eeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC-C-ceEEEeC
Confidence            866644 454 88999888765432211       24588999999998766554 4 4777765

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.94  E-value=5.6e-07  Score=89.11  Aligned_cols=219  Identities=14%  Similarity=0.186  Sum_probs=143.1

Q ss_pred             CCCCEEE-EeeCCCcEEEEECCCC----ceeEEee---e----cccCeEEEecCCCceEEEEeCC------CeEEEEEcC
Q 008496          325 KKGDYLL-TGSCDKTAIVWDVKTE----EWKQQFE---F----HSGPTLDVDWRNNVSFATSSTD------NMIYVCKIG  386 (563)
Q Consensus       325 ~~~~~l~-s~s~D~~v~iwd~~~~----~~~~~~~---~----~~~~~~~~~~~~~~~~~~~~~d------~~i~~~~~~  386 (563)
                      +++++|+ ++-.+++|.++|+.+.    +....++   .    .......+....+..++++..+      +.+.++|..
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdGi~Vs~~g~~~g~~~g~v~vlD~~  172 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDAIYISALGNEEGEGPGGILMLDHY  172 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSCEEEEEEEETTSCSCCEEEEECTT
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCeEEEEcCCCcCCCCCCeEEEEECC
Confidence            7777765 5666789999998755    4555552   1    0011222333333355555444      789999998


Q ss_pred             CCcceeeecCCCc---ceeEEEECCCCCEEEEEe-------------------CCCcEEEEeCCCCceeeeeccc--CCC
Q 008496          387 ENRPIKTFAGHQG---EVNCVKWDPTGSLLASCS-------------------DDVTAKIWNMKQDKYVHDLREH--SKE  442 (563)
Q Consensus       387 ~~~~~~~~~~h~~---~i~~~~~~~~~~~las~s-------------------~dg~i~iwd~~~~~~~~~~~~~--~~~  442 (563)
                      +.+.+.++....+   .--.+.|+|+++.+++..                   .+.+|.+||+.+++.+.++...  ...
T Consensus       173 T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~  252 (462)
T 2ece_A          173 SFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRM  252 (462)
T ss_dssp             TCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEE
T ss_pred             CCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCc
Confidence            8888887762222   123478899999888874                   3689999999988777766542  122


Q ss_pred             EEEEEE--ccCCCCCCCCCCcEEEEEEe-----CCCeEEEEeCCCCeEE--EE--ecCC----------------CCCEE
Q 008496          443 IYTIRW--SPTGSGTNNPNQQLILASAS-----FDSTVKLWDVELGKLL--YS--LNGH----------------REPVY  495 (563)
Q Consensus       443 i~~~~~--~p~~~~~~~~~~~~~l~s~s-----~dg~i~iwd~~~~~~~--~~--~~~h----------------~~~i~  495 (563)
                      ...+.|  +|++.        ...+++-     .+++|.+|....++..  ..  +...                .....
T Consensus       253 P~~i~f~~~Pdg~--------~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa  324 (462)
T 2ece_A          253 ALELRPLHDPTKL--------MGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVT  324 (462)
T ss_dssp             EEEEEECSSTTCC--------EEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCC
T ss_pred             cceeEeeECCCCC--------EEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCcee
Confidence            344555  77664        3555566     7788988766554321  11  1110                13367


Q ss_pred             EEEEcCCCCEEEEEeC-CCcEEEEecCC---CeeEEEEecCC---------------CEEEEEEcCCCCEEEEEE
Q 008496          496 SLAFSPTGEYLASGSL-DKSMHIWSLKE---GKIVKTYTGNG---------------GIFEVCWNKEGDKIAACF  551 (563)
Q Consensus       496 ~l~~spdg~~lasgs~-dg~v~iw~~~~---~~~~~~~~~~~---------------~i~~l~w~~~g~~la~~~  551 (563)
                      .|.+||||++|.++.. .+.|.+||+.+   .+++......+               ....++++|||++|.++.
T Consensus       325 ~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          325 DIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             CEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             EEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence            8999999999977664 68999999853   35666654431               357899999999999987

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.92  E-value=4.2e-05  Score=84.07  Aligned_cols=314  Identities=10%  Similarity=0.080  Sum_probs=194.0

Q ss_pred             CCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeee-cccccCCCCeEEEEECCCCCEEEEEe
Q 008496          215 TSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVK-GRTNEKSKDVTTLDWNGEGTLLATGS  293 (563)
Q Consensus       215 ~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~V~~l~~s~~g~~l~sg~  293 (563)
                      ...|.++...+++.+.+....+| +.+|+..++...           ...... .........|.++...++|.+.+ |+
T Consensus       214 ~~~i~~i~~d~~g~lwigt~~~G-l~~~~~~~~~~~-----------~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt  280 (795)
T 4a2l_A          214 TKQIQAILQQSPTRIWVATEGAG-LFLINPKTKEIK-----------NYLHSPSNPKSISSNYIRSLAMDSQNRLWI-GT  280 (795)
T ss_dssp             CCCEEEEEEEETTEEEEEEBSSC-EEEEETTTTEEE-----------EECCCTTCTTSCSCSBEEEEEECTTSCEEE-EE
T ss_pred             CCeeEEEEEcCCCCEEEEECCCC-eEEEeCCCCeEE-----------EeecCCCCccccCCCeEEEEEEcCCCCEEE-Ee
Confidence            45688888777777655433344 777886543210           000000 00111245699999999988665 44


Q ss_pred             CCCeEEEEEcCCceeEeecc--------CCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEee------ecccC
Q 008496          294 YDGQARIWSTNGDLKCTLSK--------HKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFE------FHSGP  359 (563)
Q Consensus       294 ~dg~i~vw~~~~~~~~~~~~--------h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~------~~~~~  359 (563)
                      .+ -+.+|+........+..        ....|.++...++|. |..|+.++-|..|+..+..+.....      .....
T Consensus       281 ~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~  358 (795)
T 4a2l_A          281 FN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNV  358 (795)
T ss_dssp             SS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSS
T ss_pred             CC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCe
Confidence            45 57888876544333321        235799999998886 4556677788999876655432211      11234


Q ss_pred             eEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeec-C--------CCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCC
Q 008496          360 TLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFA-G--------HQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD  430 (563)
Q Consensus       360 ~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~-~--------h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~  430 (563)
                      +.++....+..+-.++.++.|..++...... ..+. .        ....|.++..++++++|..|+.++-|.+||..++
T Consensus       359 V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~-~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~  437 (795)
T 4a2l_A          359 VSCIVEDKDKNLWIGTNDGGLNLYNPITQRF-TSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSG  437 (795)
T ss_dssp             EEEEEECTTSCEEEEESSSCEEEECTTTCCE-EEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTC
T ss_pred             eEEEEECCCCCEEEEECCCCeEEEcCCCCcE-EEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCC
Confidence            5666555555666667676777777655432 2221 1        1356889999889985666777777999998877


Q ss_pred             ceeeeec----ccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecC------CCCCEEEEEEc
Q 008496          431 KYVHDLR----EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNG------HREPVYSLAFS  500 (563)
Q Consensus       431 ~~~~~~~----~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~------h~~~i~~l~~s  500 (563)
                      +...-..    .....|.++...+++.        +++  |+.+ -|.+||..+++.......      ....|.++...
T Consensus       438 ~~~~~~~~~~~l~~~~v~~i~~d~~g~--------lwi--gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d  506 (795)
T 4a2l_A          438 QVENFNQRNSQLVNENVYAILPDGEGN--------LWL--GTLS-ALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRD  506 (795)
T ss_dssp             CEEEECTTTSCCSCSCEEEEEECSSSC--------EEE--EESS-CEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEEC
T ss_pred             cEEEeecCCCCcCCCeeEEEEECCCCC--------EEE--EecC-ceeEEeCCCCeEEEccccccccccCCceEEEEEEC
Confidence            6433211    1345688888766553        333  4444 588899887765432211      23579999999


Q ss_pred             CCCCEEEEEeCCCcEEEEecCCCeeEEEEe--------cCCCEEEEEEcCCCCEEEEEECCCeEEEEEe
Q 008496          501 PTGEYLASGSLDKSMHIWSLKEGKIVKTYT--------GNGGIFEVCWNKEGDKIAACFANHTVCVLDF  561 (563)
Q Consensus       501 pdg~~lasgs~dg~v~iw~~~~~~~~~~~~--------~~~~i~~l~w~~~g~~la~~~~~~~v~v~~~  561 (563)
                      ++|.+.+... . -|..|+..+++.  .+.        ....|.++..+++|+..++. .+ .+..||.
T Consensus       507 ~~g~lWigt~-~-Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT-~~-Gl~~~d~  569 (795)
T 4a2l_A          507 SHKRLWIGGE-E-GLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVGT-RE-GFYCFNE  569 (795)
T ss_dssp             TTCCEEEEES-S-CEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEEE-SS-CEEEEET
T ss_pred             CCCCEEEEeC-C-ceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEEe-CC-CceeECC
Confidence            9998766544 4 488999887766  332        12358899999999865554 34 4666663

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.88  E-value=2.9e-07  Score=98.80  Aligned_cols=269  Identities=12%  Similarity=0.069  Sum_probs=168.2

Q ss_pred             CCEEEEEeCCCeEEEEEc-CCceeEeeccCCC----------CE-EEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEe
Q 008496          286 GTLLATGSYDGQARIWST-NGDLKCTLSKHKG----------PI-FSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQF  353 (563)
Q Consensus       286 g~~l~sg~~dg~i~vw~~-~~~~~~~~~~h~~----------~V-~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~  353 (563)
                      +..+++++.++.|..+|. +|+.+..+.....          .+ ..+..  .+..++.++.|+.|..+|..+++.+-.+
T Consensus        66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W~~  143 (668)
T 1kv9_A           66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWSQ  143 (668)
T ss_dssp             TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCCEeeee
Confidence            445666777788888885 4555544432111          00 01111  3467888899999999999999877666


Q ss_pred             eecccC----eE-EEecCCCceEEEEeC-----CCeEEEEEcCCCcceeeecCC--------------------------
Q 008496          354 EFHSGP----TL-DVDWRNNVSFATSST-----DNMIYVCKIGENRPIKTFAGH--------------------------  397 (563)
Q Consensus       354 ~~~~~~----~~-~~~~~~~~~~~~~~~-----d~~i~~~~~~~~~~~~~~~~h--------------------------  397 (563)
                      ......    +. .....++..++..+.     ++.|+.+|..+++.+-.+...                          
T Consensus       144 ~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w  223 (668)
T 1kv9_A          144 QTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYW  223 (668)
T ss_dssp             ECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHH
T ss_pred             ccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCcccee
Confidence            542110    00 000113333333222     588999999888776555311                          


Q ss_pred             -----CcceeEEEECCCCCEEEEEeCCCc-------------------EEEEeCCCCceeeeecc--cC-------CCEE
Q 008496          398 -----QGEVNCVKWDPTGSLLASCSDDVT-------------------AKIWNMKQDKYVHDLRE--HS-------KEIY  444 (563)
Q Consensus       398 -----~~~i~~~~~~~~~~~las~s~dg~-------------------i~iwd~~~~~~~~~~~~--~~-------~~i~  444 (563)
                           ......++++|+..+++.++.++.                   |..+|.++++.+-.++.  |.       .+..
T Consensus       224 ~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~  303 (668)
T 1kv9_A          224 KLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQIT  303 (668)
T ss_dssp             HHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEE
T ss_pred             eeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcE
Confidence                 001124788888888888887763                   89999999988766543  22       1221


Q ss_pred             EEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCC------------CCE------------------
Q 008496          445 TIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHR------------EPV------------------  494 (563)
Q Consensus       445 ~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~------------~~i------------------  494 (563)
                      ......++.      ...+++.++.+|.++++|..+|+.+.......            .++                  
T Consensus       304 ~~d~~~~G~------~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~  377 (668)
T 1kv9_A          304 LAELNIDGK------PRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSP  377 (668)
T ss_dssp             EEEEEETTE------EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCT
T ss_pred             EEEeccCCc------EEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCC
Confidence            111112221      11257889999999999999999885433211            011                  


Q ss_pred             ------EEEEEcCCCCEEEEE------------------------------------eCCCcEEEEecCCCeeEEEEecC
Q 008496          495 ------YSLAFSPTGEYLASG------------------------------------SLDKSMHIWSLKEGKIVKTYTGN  532 (563)
Q Consensus       495 ------~~l~~spdg~~lasg------------------------------------s~dg~v~iw~~~~~~~~~~~~~~  532 (563)
                            ..++|+|+...+...                                    ..+|.|..||+.+|+.+..+...
T Consensus       378 ~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~  457 (668)
T 1kv9_A          378 FGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYP  457 (668)
T ss_dssp             TCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEES
T ss_pred             ccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCC
Confidence                  126788876655431                                    13478999999999998887665


Q ss_pred             CCEEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496          533 GGIFEVCWNKEGDKIAACFANHTVCVLDFR  562 (563)
Q Consensus       533 ~~i~~l~w~~~g~~la~~~~~~~v~v~~~~  562 (563)
                      .......+...|..|+++..++.+.+||.+
T Consensus       458 ~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~  487 (668)
T 1kv9_A          458 THWNGGTLSTAGNLVFQGTAAGQMHAYSAD  487 (668)
T ss_dssp             SSCCCCEEEETTTEEEEECTTSEEEEEETT
T ss_pred             CCCcCceeEeCCCEEEEECCcccchhhhhh
Confidence            544444566678899999999999999864

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.86  E-value=1.5e-06  Score=93.22  Aligned_cols=265  Identities=14%  Similarity=0.192  Sum_probs=155.2

Q ss_pred             CCEEEEEeCCCeEEEEEc-CCceeEeeccCCC-CEEEEEeCC--CCCEEEEeeC------CCcEEEEECCCCceeEEeee
Q 008496          286 GTLLATGSYDGQARIWST-NGDLKCTLSKHKG-PIFSLKWNK--KGDYLLTGSC------DKTAIVWDVKTEEWKQQFEF  355 (563)
Q Consensus       286 g~~l~sg~~dg~i~vw~~-~~~~~~~~~~h~~-~V~~l~~~~--~~~~l~s~s~------D~~v~iwd~~~~~~~~~~~~  355 (563)
                      +..++.++.|+.+..+|. +|+++..+..... ....+...|  .+..++.+..      ++.|..+|..+++.+-.+..
T Consensus       117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~  196 (668)
T 1kv9_A          117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYT  196 (668)
T ss_dssp             BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEES
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecc
Confidence            467888889999999996 4766655433110 000000111  1345555543      58999999999998776653


Q ss_pred             ccc-C--------------------------------eEEEecCCCceEEEEeCCC-------------------eEEEE
Q 008496          356 HSG-P--------------------------------TLDVDWRNNVSFATSSTDN-------------------MIYVC  383 (563)
Q Consensus       356 ~~~-~--------------------------------~~~~~~~~~~~~~~~~~d~-------------------~i~~~  383 (563)
                      ... +                                ...++-.. ..+..+..++                   .|+.+
T Consensus       197 ~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~-~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~Al  275 (668)
T 1kv9_A          197 VPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPEL-DLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAI  275 (668)
T ss_dssp             SCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTT-TEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEE
T ss_pred             cCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCC-CEEEEeCCCCCccccCCCCCCCCCceeeeeEEEE
Confidence            210 0                                01111122 2333343333                   48888


Q ss_pred             EcCCCcceeeecC--CC-------cceeEEEECCCCC---EEEEEeCCCcEEEEeCCCCceeeeecccCCC-EEEE----
Q 008496          384 KIGENRPIKTFAG--HQ-------GEVNCVKWDPTGS---LLASCSDDVTAKIWNMKQDKYVHDLREHSKE-IYTI----  446 (563)
Q Consensus       384 ~~~~~~~~~~~~~--h~-------~~i~~~~~~~~~~---~las~s~dg~i~iwd~~~~~~~~~~~~~~~~-i~~~----  446 (563)
                      |..+++.+-.+..  |.       .......+..+|+   .++.++.+|.+.++|..+++.+......... ...+    
T Consensus       276 D~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~  355 (668)
T 1kv9_A          276 RPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLAT  355 (668)
T ss_dssp             CTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTT
T ss_pred             cCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEecccccccccccccccccc
Confidence            8888877665543  22       2222233334665   6889999999999999999877433221100 0000    


Q ss_pred             ----------------EEccCCCC-------CCCCCCcEEEE-----------------------------------EEe
Q 008496          447 ----------------RWSPTGSG-------TNNPNQQLILA-----------------------------------SAS  468 (563)
Q Consensus       447 ----------------~~~p~~~~-------~~~~~~~~~l~-----------------------------------s~s  468 (563)
                                      ...|...+       ..+|....+.+                                   ...
T Consensus       356 g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~  435 (668)
T 1kv9_A          356 GRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAV  435 (668)
T ss_dssp             CCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGG
T ss_pred             CCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCC
Confidence                            00010000       00111122221                                   112


Q ss_pred             CCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEecCCCEE--EEEEcCCCC-
Q 008496          469 FDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIF--EVCWNKEGD-  545 (563)
Q Consensus       469 ~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~~~~i~--~l~w~~~g~-  545 (563)
                      .+|.|..||+.+|+.++....+ .++....+...+.+++.|+.|+.|+.||.++|+++..+....++.  -+.+..+|+ 
T Consensus       436 ~~g~l~A~D~~tG~~~W~~~~~-~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~~~~G~~  514 (668)
T 1kv9_A          436 VSGALLAWDPVKQKAAWKVPYP-THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQ  514 (668)
T ss_dssp             CEEEEEEEETTTTEEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred             ccceEEEEeCCCCcEEEEccCC-CCCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecCCCCcccCceEEEECCEE
Confidence            4588999999999999887643 334444555678889999999999999999999999887655442  355667786 


Q ss_pred             EEEEEEC
Q 008496          546 KIAACFA  552 (563)
Q Consensus       546 ~la~~~~  552 (563)
                      ++++|..
T Consensus       515 yva~~~G  521 (668)
T 1kv9_A          515 YVAIMAG  521 (668)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEec
Confidence            6666654

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.80  E-value=1.4e-06  Score=86.23  Aligned_cols=183  Identities=15%  Similarity=0.200  Sum_probs=125.4

Q ss_pred             ceEEEEeCCCeEEEEEcCCC----cceeeec-------CCCcceeEEEECCCCCEEEEEeCC------CcEEEEeCCCCc
Q 008496          369 VSFATSSTDNMIYVCKIGEN----RPIKTFA-------GHQGEVNCVKWDPTGSLLASCSDD------VTAKIWNMKQDK  431 (563)
Q Consensus       369 ~~~~~~~~d~~i~~~~~~~~----~~~~~~~-------~h~~~i~~~~~~~~~~~las~s~d------g~i~iwd~~~~~  431 (563)
                      ..++.+..++.|+++|+.+.    +.++++.       .....-..+.+.|+| +++++..+      +.|.+.|..+.+
T Consensus        97 ~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~  175 (462)
T 2ece_A           97 FLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFE  175 (462)
T ss_dssp             EEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCC
T ss_pred             EEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCe
Confidence            34567778899999998754    4444442       011134457788999 77776665      789999999999


Q ss_pred             eeeeecccC---CCEEEEEEccCCCCCCCCCCcEEEEEEe-------------------CCCeEEEEeCCCCeEEEEecC
Q 008496          432 YVHDLREHS---KEIYTIRWSPTGSGTNNPNQQLILASAS-------------------FDSTVKLWDVELGKLLYSLNG  489 (563)
Q Consensus       432 ~~~~~~~~~---~~i~~~~~~p~~~~~~~~~~~~~l~s~s-------------------~dg~i~iwd~~~~~~~~~~~~  489 (563)
                      .+..+....   .--+.+.|+|++.         ++++..                   .+.+|.+||+.+++.+.++.-
T Consensus       176 v~~~~~~~~~~~~~~Yd~~~~p~~~---------~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~v  246 (462)
T 2ece_A          176 PLGKWEIDRGDQYLAYDFWWNLPNE---------VLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTL  246 (462)
T ss_dssp             EEEECCSBCTTCCCCCCEEEETTTT---------EEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEES
T ss_pred             EEEEEccCCCCccccceEEECCCCC---------EEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEec
Confidence            888775322   2245678888764         455553                   378999999999988877754


Q ss_pred             C--CCCEEEEEE--cCCCCEEEEEe------CCCcEEEEecCCCee--EEEE--ec-----------------CCCEEEE
Q 008496          490 H--REPVYSLAF--SPTGEYLASGS------LDKSMHIWSLKEGKI--VKTY--TG-----------------NGGIFEV  538 (563)
Q Consensus       490 h--~~~i~~l~~--spdg~~lasgs------~dg~v~iw~~~~~~~--~~~~--~~-----------------~~~i~~l  538 (563)
                      -  ......+.|  +|+|+++.+++      .+++|.+|....|+.  .+.+  ..                 ...+.++
T Consensus       247 g~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I  326 (462)
T 2ece_A          247 GEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDI  326 (462)
T ss_dssp             CTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCE
T ss_pred             CCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEE
Confidence            2  122345656  99999887666      567898877765532  1211  11                 1346789


Q ss_pred             EEcCCCCEEEEEE-CCCeEEEEEe
Q 008496          539 CWNKEGDKIAACF-ANHTVCVLDF  561 (563)
Q Consensus       539 ~w~~~g~~la~~~-~~~~v~v~~~  561 (563)
                      .+++||++|.++. ..+.|+|||+
T Consensus       327 ~lS~DGrfLYVSnrg~d~VavfdV  350 (462)
T 2ece_A          327 DISLDDKFLYLSLWGIGEVRQYDI  350 (462)
T ss_dssp             EECTTSCEEEEEETTTTEEEEEEC
T ss_pred             EECCCCCEEEEEeCCCCEEEEEEe
Confidence            9999999888764 4679999997

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.79  E-value=1.2e-06  Score=81.50  Aligned_cols=193  Identities=10%  Similarity=0.067  Sum_probs=135.3

Q ss_pred             EEEEEeCCCCCEEEEeeC--CCcEEEEECCCCceeEEeeecccC-eEEEecCCCceEEEEeCCCeEEEEEcCCCcceeee
Q 008496          318 IFSLKWNKKGDYLLTGSC--DKTAIVWDVKTEEWKQQFEFHSGP-TLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTF  394 (563)
Q Consensus       318 V~~l~~~~~~~~l~s~s~--D~~v~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~  394 (563)
                      ..++.|++++...++.+.  +++|.+.|+.+++....+.....+ ...+.+.++..+++.-.++.+.++|..+.+.+.++
T Consensus        23 ~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~~~~v~viD~~t~~v~~~i  102 (266)
T 2iwa_A           23 TQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWLKNIGFIYDRRTLSNIKNF  102 (266)
T ss_dssp             EEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETTCSEEEEEETTTTEEEEEE
T ss_pred             cccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEecCCEEEEEECCCCcEEEEE
Confidence            578999998644444433  579999999999988877643322 22345556677788888999999999988888877


Q ss_pred             cCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccC-----CCEEEEEEccCCCCCCCCCCcEEEEEEeC
Q 008496          395 AGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHS-----KEIYTIRWSPTGSGTNNPNQQLILASASF  469 (563)
Q Consensus       395 ~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~-----~~i~~~~~~p~~~~~~~~~~~~~l~s~s~  469 (563)
                      ..-...-..+  ++||+.++.+..++.|.++|..+.+.+..+....     .....+.|. ++.         +.+....
T Consensus       103 ~~g~~~g~gl--t~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~---------lyvn~~~  170 (266)
T 2iwa_A          103 THQMKDGWGL--ATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGE---------VWANIWQ  170 (266)
T ss_dssp             ECCSSSCCEE--EECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE---------EEEEETT
T ss_pred             ECCCCCeEEE--EECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCE---------EEEecCC
Confidence            5221222334  4467666666678899999999988776655321     134566776 432         4566666


Q ss_pred             CCeEEEEeCCCCeEEEEecCC-------------CCCEEEEEEcCCCCE-EEEEeCCCcEEEEecCC
Q 008496          470 DSTVKLWDVELGKLLYSLNGH-------------REPVYSLAFSPTGEY-LASGSLDKSMHIWSLKE  522 (563)
Q Consensus       470 dg~i~iwd~~~~~~~~~~~~h-------------~~~i~~l~~spdg~~-lasgs~dg~v~iw~~~~  522 (563)
                      ++.|.+.|..+++.+..+.-.             ....+.|+|+|+++. ++++...+.|.+.++..
T Consensus       171 ~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~  237 (266)
T 2iwa_A          171 TDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHL  237 (266)
T ss_dssp             SSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEE
T ss_pred             CCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEec
Confidence            889999999999998877521             124589999999864 56666778888888754

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.79  E-value=4.9e-06  Score=87.37  Aligned_cols=262  Identities=14%  Similarity=0.157  Sum_probs=150.0

Q ss_pred             CCEEEEEeCCCeEEEEEc-CCceeEeec--cCCCCEEEEEeCC--CCCEEEEeeC------CCcEEEEECCCCceeEEee
Q 008496          286 GTLLATGSYDGQARIWST-NGDLKCTLS--KHKGPIFSLKWNK--KGDYLLTGSC------DKTAIVWDVKTEEWKQQFE  354 (563)
Q Consensus       286 g~~l~sg~~dg~i~vw~~-~~~~~~~~~--~h~~~V~~l~~~~--~~~~l~s~s~------D~~v~iwd~~~~~~~~~~~  354 (563)
                      +..++.++.|+.+..+|. .|+......  .+... ..+.-+|  .+..++.++.      ++.|..+|..+++.+-.+.
T Consensus       115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~-~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~  193 (571)
T 2ad6_A          115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVG-STLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAF  193 (571)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGT-CBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred             CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCcc-ceeccCCEEECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEc
Confidence            567888888999999996 566654432  21100 0011111  1345565554      7999999999998776654


Q ss_pred             ecccC----------------------------------------eEEEecCCCceEEEEe-----------CC----Ce
Q 008496          355 FHSGP----------------------------------------TLDVDWRNNVSFATSS-----------TD----NM  379 (563)
Q Consensus       355 ~~~~~----------------------------------------~~~~~~~~~~~~~~~~-----------~d----~~  379 (563)
                      .....                                        ...++-..+..++..+           .+    +.
T Consensus       194 ~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~  273 (571)
T 2ad6_A          194 ATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMT  273 (571)
T ss_dssp             SSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTE
T ss_pred             cCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEE
Confidence            32110                                        0112222223333322           12    25


Q ss_pred             EEEEEcCCCcceeeecC--CC--------cceeEEEECCCCC---EEEEEeCCCcEEEEeCCCCceeeeecccC------
Q 008496          380 IYVCKIGENRPIKTFAG--HQ--------GEVNCVKWDPTGS---LLASCSDDVTAKIWNMKQDKYVHDLREHS------  440 (563)
Q Consensus       380 i~~~~~~~~~~~~~~~~--h~--------~~i~~~~~~~~~~---~las~s~dg~i~iwd~~~~~~~~~~~~~~------  440 (563)
                      |+.++..+++.+-.+..  |.        ..+ -+....+|+   +++.++.+|.+.++|..+++.+..+....      
T Consensus       274 v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~-l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~  352 (571)
T 2ad6_A          274 IWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMV-LTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFK  352 (571)
T ss_dssp             EEEEETTTCCEEEEEESSTTCSSCCCCCCCCE-EEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEE
T ss_pred             EEEEecCCCcEEEEecCCCCcccccccCCCCE-EEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccc
Confidence            88888888777655542  21        112 122234674   67788999999999999998775543211      


Q ss_pred             -------CCEE-----------EEEEccCCC-------CCCCCCCcEEEEEE----------------------------
Q 008496          441 -------KEIY-----------TIRWSPTGS-------GTNNPNQQLILASA----------------------------  467 (563)
Q Consensus       441 -------~~i~-----------~~~~~p~~~-------~~~~~~~~~~l~s~----------------------------  467 (563)
                             .++.           ....+|...       ...+|...++++..                            
T Consensus       353 ~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~  432 (571)
T 2ad6_A          353 KVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMY  432 (571)
T ss_dssp             EECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEE
T ss_pred             cccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceec
Confidence                   1111           001111100       00112222222221                            


Q ss_pred             --------eCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEecCCCEE--E
Q 008496          468 --------SFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIF--E  537 (563)
Q Consensus       468 --------s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~~~~i~--~  537 (563)
                              ..+|.|..||+.+++.+.++... .++.+..+...+..++.++.||.|+.||.++|+++..+.....+.  .
T Consensus       433 ~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~-~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p  511 (571)
T 2ad6_A          433 PGPNGPTKKEMGQIRAFDLTTGKAKWTKWEK-FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSP  511 (571)
T ss_dssp             ECTTSTTSCCCEEEEEECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCC
T ss_pred             cCccccCCCCCCeEEEEECCCCCEEEEecCC-CCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEeee
Confidence                    24689999999999998887532 233333333346677779999999999999999999987654432  3


Q ss_pred             EEEcCCCCEEEEE
Q 008496          538 VCWNKEGDKIAAC  550 (563)
Q Consensus       538 l~w~~~g~~la~~  550 (563)
                      +.+..+|+.++++
T Consensus       512 ~~~~~~G~~yv~~  524 (571)
T 2ad6_A          512 MTYSFKGKQYIGS  524 (571)
T ss_dssp             EEEEETTEEEEEE
T ss_pred             EEEEECCEEEEEE
Confidence            4566788755544

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.78  E-value=2.4e-06  Score=89.75  Aligned_cols=267  Identities=12%  Similarity=0.083  Sum_probs=159.4

Q ss_pred             CEEEEEeC-CCeEEEEEc--CCceeEeeccCCC----------CE-EEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEE
Q 008496          287 TLLATGSY-DGQARIWST--NGDLKCTLSKHKG----------PI-FSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQ  352 (563)
Q Consensus       287 ~~l~sg~~-dg~i~vw~~--~~~~~~~~~~h~~----------~V-~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~  352 (563)
                      ..++.++. ++.+..+|.  .|+.+..+.....          .+ ..+..  .+..++.++.|+.+..+|..+++.+-.
T Consensus        63 g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W~  140 (571)
T 2ad6_A           63 DMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQANGHLLALDAKTGKINWE  140 (571)
T ss_dssp             TEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             CEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCEEEEEeCCCEEEEEECCCCCEEEE
Confidence            34555555 677777776  4555544321110          00 01111  356788888999999999999987765


Q ss_pred             eeeccc----CeE-EEecCCCceEEEEeC-----CCeEEEEEcCCCcceeeecCCCcc----------------------
Q 008496          353 FEFHSG----PTL-DVDWRNNVSFATSST-----DNMIYVCKIGENRPIKTFAGHQGE----------------------  400 (563)
Q Consensus       353 ~~~~~~----~~~-~~~~~~~~~~~~~~~-----d~~i~~~~~~~~~~~~~~~~h~~~----------------------  400 (563)
                      +.....    .+. .....++..++.+..     ++.|+.+|..+++.+-.+......                      
T Consensus       141 ~~~~~~~~~~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g  220 (571)
T 2ad6_A          141 VEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLG  220 (571)
T ss_dssp             EECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHH
T ss_pred             ecCCCCCccceeccCCEEECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccccccccccccc
Confidence            543210    000 000113333443332     789999999887766544321100                      


Q ss_pred             ----------------eeEEEECCCCCEEEEEeCC----------------CcEEEEeCCCCceeeeecc--cC------
Q 008496          401 ----------------VNCVKWDPTGSLLASCSDD----------------VTAKIWNMKQDKYVHDLRE--HS------  440 (563)
Q Consensus       401 ----------------i~~~~~~~~~~~las~s~d----------------g~i~iwd~~~~~~~~~~~~--~~------  440 (563)
                                      ...+++++...++..++.+                +.|..+|.++++.+-.++.  |.      
T Consensus       221 ~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~  300 (571)
T 2ad6_A          221 TKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAG  300 (571)
T ss_dssp             HHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCC
T ss_pred             cccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCccccccc
Confidence                            0235666766666655532                3588899999887765542  11      


Q ss_pred             --CCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCC-------------CCE-----------
Q 008496          441 --KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHR-------------EPV-----------  494 (563)
Q Consensus       441 --~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~-------------~~i-----------  494 (563)
                        .++. +...++|.      ...+++.++.+|.+.++|..+|+.+....-..             .||           
T Consensus       301 ~~~p~l-~~~~~~G~------~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~  373 (571)
T 2ad6_A          301 VNQMVL-TDQPVNGK------MTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDH  373 (571)
T ss_dssp             CCCCEE-EEEEETTE------EEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTC
T ss_pred             CCCCEE-EecccCCc------EEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCC
Confidence              1111 11111221      00256778899999999999999987754211             122           


Q ss_pred             ---------------EEEEEcCCCCEEEEEe-------------------------------------CCCcEEEEecCC
Q 008496          495 ---------------YSLAFSPTGEYLASGS-------------------------------------LDKSMHIWSLKE  522 (563)
Q Consensus       495 ---------------~~l~~spdg~~lasgs-------------------------------------~dg~v~iw~~~~  522 (563)
                                     ..++|+|+..+|.+.+                                     .+|.|..||+.+
T Consensus       374 ~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~t  453 (571)
T 2ad6_A          374 KGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTT  453 (571)
T ss_dssp             CEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTT
T ss_pred             CceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCC
Confidence                           2467888877666543                                     357899999999


Q ss_pred             CeeEEEEecCCCEEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496          523 GKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLDFR  562 (563)
Q Consensus       523 ~~~~~~~~~~~~i~~l~w~~~g~~la~~~~~~~v~v~~~~  562 (563)
                      |+++..+.....+........+..+.++..++.+.+||.+
T Consensus       454 G~~~W~~~~~~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~  493 (571)
T 2ad6_A          454 GKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALDNK  493 (571)
T ss_dssp             CCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETT
T ss_pred             CCEEEEecCCCCccceeEEECCCEEEEEcCCCeEEEEECC
Confidence            9998888655444333334456778888889999999864

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.77  E-value=3e-06  Score=82.26  Aligned_cols=234  Identities=12%  Similarity=0.086  Sum_probs=140.3

Q ss_pred             eEEEEECCCCCEEEEEeCCCeEEEEEcCCceeEeecc--------------------CCCCEEEEEeCCCCCEEEEeeCC
Q 008496          277 VTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSK--------------------HKGPIFSLKWNKKGDYLLTGSCD  336 (563)
Q Consensus       277 V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~~~~~~~--------------------h~~~V~~l~~~~~~~~l~s~s~D  336 (563)
                      ..+++|.++|+++.++..++.|..|+..+.....+..                    ....+.++++.+++..|+.+...
T Consensus        21 p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~~  100 (322)
T 2fp8_A           21 PNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDCY  100 (322)
T ss_dssp             CCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEETT
T ss_pred             ceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEECC
Confidence            4567899999978888899999999887643333221                    11347889999733456656555


Q ss_pred             CcEEEEECCCCceeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECC-CCCEEEE
Q 008496          337 KTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDP-TGSLLAS  415 (563)
Q Consensus       337 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~-~~~~las  415 (563)
                      +.+..+|..++.... +....                             ...       .....+.+++.+ +|++.++
T Consensus       101 ~~i~~~d~~~g~~~~-~~~~~-----------------------------~~~-------~~~~p~~i~~d~~~G~l~v~  143 (322)
T 2fp8_A          101 YHLSVVGSEGGHATQ-LATSV-----------------------------DGV-------PFKWLYAVTVDQRTGIVYFT  143 (322)
T ss_dssp             TEEEEECTTCEECEE-EESEE-----------------------------TTE-------ECSCEEEEEECTTTCCEEEE
T ss_pred             CCEEEEeCCCCEEEE-ecccC-----------------------------CCC-------cccccceEEEecCCCEEEEE
Confidence            568888876543211 10000                             000       011244566666 6665554


Q ss_pred             EeC-----------------CCcEEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeC
Q 008496          416 CSD-----------------DVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDV  478 (563)
Q Consensus       416 ~s~-----------------dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~  478 (563)
                      -..                 ++.|..||..++....... .......++|+|++.        .++++-+..+.|..|++
T Consensus       144 d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~-~~~~p~gia~~~dg~--------~lyv~d~~~~~I~~~~~  214 (322)
T 2fp8_A          144 DVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLK-ELHVPGGAEVSADSS--------FVLVAEFLSHQIVKYWL  214 (322)
T ss_dssp             ESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEE-EESCCCEEEECTTSS--------EEEEEEGGGTEEEEEES
T ss_pred             CCcccccccccceehcccCCCceEEEEeCCCCEEEEecc-CCccCcceEECCCCC--------EEEEEeCCCCeEEEEEC
Confidence            322                 3667777776554322111 112235678888764        34455566789999998


Q ss_pred             CC---Ce--EEEEecCCCCCEEEEEEcCCCCEEEEEeC----------CCcEEEEecCCCeeEEEEecC-----CCEEEE
Q 008496          479 EL---GK--LLYSLNGHREPVYSLAFSPTGEYLASGSL----------DKSMHIWSLKEGKIVKTYTGN-----GGIFEV  538 (563)
Q Consensus       479 ~~---~~--~~~~~~~h~~~i~~l~~spdg~~lasgs~----------dg~v~iw~~~~~~~~~~~~~~-----~~i~~l  538 (563)
                      ..   +.  ....+   .+ ...++++++|++.++...          .+.|..++. +|+.+..+...     ..+..+
T Consensus       215 ~~~~~~~~~~~~~~---~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~  289 (322)
T 2fp8_A          215 EGPKKGTAEVLVKI---PN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQI  289 (322)
T ss_dssp             SSTTTTCEEEEEEC---SS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEE
T ss_pred             CCCcCCccceEEeC---CC-CCCeEECCCCCEEEEecCcccccccCCCccEEEEECC-CCCEEEEEECCCCCccccceEE
Confidence            74   22  22222   23 678999999987776544          467888887 57877777543     235566


Q ss_pred             EEcCCCCEEEEEECCCeEEEEEee
Q 008496          539 CWNKEGDKIAACFANHTVCVLDFR  562 (563)
Q Consensus       539 ~w~~~g~~la~~~~~~~v~v~~~~  562 (563)
                      ++ .+|+..++...++.|.++++.
T Consensus       290 ~~-~~g~L~v~~~~~~~i~~~~~~  312 (322)
T 2fp8_A          290 QE-HDGLLYIGTLFHGSVGILVYD  312 (322)
T ss_dssp             EE-ETTEEEEECSSCSEEEEEEC-
T ss_pred             EE-eCCEEEEeecCCCceEEEecc
Confidence            66 356555555667888888764

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.74  E-value=4.1e-06  Score=88.02  Aligned_cols=265  Identities=11%  Similarity=0.053  Sum_probs=156.7

Q ss_pred             CEEEEEeC-CCeEEEEEc--CCceeEeeccCCC-----------CEEEEEeCCCCCE----EEEeeCCCcEEEEECCCCc
Q 008496          287 TLLATGSY-DGQARIWST--NGDLKCTLSKHKG-----------PIFSLKWNKKGDY----LLTGSCDKTAIVWDVKTEE  348 (563)
Q Consensus       287 ~~l~sg~~-dg~i~vw~~--~~~~~~~~~~h~~-----------~V~~l~~~~~~~~----l~s~s~D~~v~iwd~~~~~  348 (563)
                      ..++.++. ++.|..+|.  .|+.+-.+.....           ....+...|.+..    ++.++.|+.+..+|..+++
T Consensus        63 g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~  142 (599)
T 1w6s_A           63 GKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETGE  142 (599)
T ss_dssp             TEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTCC
T ss_pred             CEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCCC
Confidence            34555555 677777776  4555444322110           0112334333333    8888899999999999998


Q ss_pred             eeEEeeecc---------cCeEEEecCCCceEEEEe-----CCCeEEEEEcCCCcceeeecCCCcc--------------
Q 008496          349 WKQQFEFHS---------GPTLDVDWRNNVSFATSS-----TDNMIYVCKIGENRPIKTFAGHQGE--------------  400 (563)
Q Consensus       349 ~~~~~~~~~---------~~~~~~~~~~~~~~~~~~-----~d~~i~~~~~~~~~~~~~~~~h~~~--------------  400 (563)
                      .+-......         .+++    .++..++.++     .++.|+.+|..+++.+-.+......              
T Consensus       143 ~~W~~~~~~~~~~~~~~ssP~v----~~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~  218 (599)
T 1w6s_A          143 TVWKVENSDIKVGSTLTIAPYV----VKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNP  218 (599)
T ss_dssp             EEEEEECCCGGGTCBCCSCCEE----ETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCG
T ss_pred             EEEeecCCCCCccceeecCCEE----ECCEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCccccccccccccccc
Confidence            765544322         1111    1233333332     3789999998887765544321110              


Q ss_pred             -----------------------e-eEEEECCCCCEEEEEeCC----------------CcEEEEeCCCCceeeeecccC
Q 008496          401 -----------------------V-NCVKWDPTGSLLASCSDD----------------VTAKIWNMKQDKYVHDLREHS  440 (563)
Q Consensus       401 -----------------------i-~~~~~~~~~~~las~s~d----------------g~i~iwd~~~~~~~~~~~~~~  440 (563)
                                             + ..+++++...++..++.+                +.|..+|.++++.+-.++...
T Consensus       219 ~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~  298 (599)
T 1w6s_A          219 HYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTP  298 (599)
T ss_dssp             GGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESST
T ss_pred             cccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCC
Confidence                                   0 134566777777776655                378899999998876554321


Q ss_pred             ----------CCEEEEEEc-cCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCC-------------CCCE--
Q 008496          441 ----------KEIYTIRWS-PTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGH-------------REPV--  494 (563)
Q Consensus       441 ----------~~i~~~~~~-p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h-------------~~~i--  494 (563)
                                .++. +... .+|.      ...+++.++.+|.+.++|.++|+.+....-.             ..+|  
T Consensus       299 ~d~wd~d~~~~p~l-~d~~~~~G~------~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~  371 (599)
T 1w6s_A          299 HDEWDYAGVNVMML-SEQKDKDGK------ARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRD  371 (599)
T ss_dssp             TCSSCCCCCCCCEE-EEEECTTSC------EEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEEC
T ss_pred             CccccccCCCccEE-EeccccCCc------EEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeec
Confidence                      1111 1111 1221      0136777899999999999999998765421             1122  


Q ss_pred             ------------------------EEEEEcCCCCEEEEE---------------------------------e------C
Q 008496          495 ------------------------YSLAFSPTGEYLASG---------------------------------S------L  511 (563)
Q Consensus       495 ------------------------~~l~~spdg~~lasg---------------------------------s------~  511 (563)
                                              ..++|+|+..++.+.                                 +      .
T Consensus       372 ~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~  451 (599)
T 1w6s_A          372 PEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEG  451 (599)
T ss_dssp             GGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBC
T ss_pred             cccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCC
Confidence                                    246777776655442                                 1      3


Q ss_pred             CCcEEEEecCCCeeEEEEecCCCEEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496          512 DKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLDFR  562 (563)
Q Consensus       512 dg~v~iw~~~~~~~~~~~~~~~~i~~l~w~~~g~~la~~~~~~~v~v~~~~  562 (563)
                      +|.|..||+.+|+++...........-.....|..|.++..|+.+..||.+
T Consensus       452 ~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagg~vf~gt~dg~l~A~D~~  502 (599)
T 1w6s_A          452 LGQIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGYLKARDSD  502 (599)
T ss_dssp             CEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETT
T ss_pred             cCeEEEEECCCCCEEeEecCCCCccCcceEecCCEEEEECCCCeEEEEECC
Confidence            578999999999998877543222211122356677778888888888754

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.72  E-value=3.5e-05  Score=72.42  Aligned_cols=223  Identities=11%  Similarity=0.040  Sum_probs=130.6

Q ss_pred             CEEEEeeCCCcEEEEECCCCcee-----EEeeecccCeEEEec--CCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcc
Q 008496          328 DYLLTGSCDKTAIVWDVKTEEWK-----QQFEFHSGPTLDVDW--RNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGE  400 (563)
Q Consensus       328 ~~l~s~s~D~~v~iwd~~~~~~~-----~~~~~~~~~~~~~~~--~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~  400 (563)
                      .+|+.+.. +.|+.+++......     ..+......+..+.|  ..+..+++...++.|++++.........+......
T Consensus         2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~   80 (267)
T 1npe_A            2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGS   80 (267)
T ss_dssp             EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCC
T ss_pred             cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCC
Confidence            34555443 47888887654321     111111122334444  34556677777889999998765443333333346


Q ss_pred             eeEEEECCCCC-EEEEEeCCCcEEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeC--CCeEEEEe
Q 008496          401 VNCVKWDPTGS-LLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASF--DSTVKLWD  477 (563)
Q Consensus       401 i~~~~~~~~~~-~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~--dg~i~iwd  477 (563)
                      ...+++++++. ++++....+.|.++++........+.........++++|++.        .+.++...  .+.|..++
T Consensus        81 p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g--------~lyv~~~~~~~~~I~~~~  152 (267)
T 1npe_A           81 PEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRG--------NLYWTDWNRDNPKIETSH  152 (267)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTT--------EEEEEECCSSSCEEEEEE
T ss_pred             ccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCC--------EEEEEECCCCCcEEEEEe
Confidence            78999999755 555556678999999875432221222223567888888542        23333333  46888888


Q ss_pred             CCCCeEEEEe-cCCCCCEEEEEEcCCCCEEE-EEeCCCcEEEEecCCCeeEEEEecCCCEEEEEEcCCCCEEEEEECCCe
Q 008496          478 VELGKLLYSL-NGHREPVYSLAFSPTGEYLA-SGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHT  555 (563)
Q Consensus       478 ~~~~~~~~~~-~~h~~~i~~l~~spdg~~la-sgs~dg~v~iw~~~~~~~~~~~~~~~~i~~l~w~~~g~~la~~~~~~~  555 (563)
                      +.... ...+ .........++++|++.+|. +-...+.|.+++..................++.+ .+..+++...++.
T Consensus       153 ~dg~~-~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~P~gi~~d-~~~lyva~~~~~~  230 (267)
T 1npe_A          153 MDGTN-RRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTSY-GKNLYYTDWKTNS  230 (267)
T ss_dssp             TTSCC-CEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEEEE-TTEEEEEETTTTE
T ss_pred             cCCCC-cEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCCCCceEEEEe-CCEEEEEECCCCe
Confidence            76322 2222 12223468899999876664 4455689999999765444444443445677765 3444445556678


Q ss_pred             EEEEEe
Q 008496          556 VCVLDF  561 (563)
Q Consensus       556 v~v~~~  561 (563)
                      |.++|.
T Consensus       231 v~~~d~  236 (267)
T 1npe_A          231 VIAMDL  236 (267)
T ss_dssp             EEEEET
T ss_pred             EEEEeC
Confidence            888875

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.71  E-value=1.3e-06  Score=89.64  Aligned_cols=216  Identities=11%  Similarity=0.054  Sum_probs=138.6

Q ss_pred             CCCCEEEEeeC-CCcEEEEECCCCceeEEeeecc-cCeEEEec---CCCce-EEEE-----------------eCCCeEE
Q 008496          325 KKGDYLLTGSC-DKTAIVWDVKTEEWKQQFEFHS-GPTLDVDW---RNNVS-FATS-----------------STDNMIY  381 (563)
Q Consensus       325 ~~~~~l~s~s~-D~~v~iwd~~~~~~~~~~~~~~-~~~~~~~~---~~~~~-~~~~-----------------~~d~~i~  381 (563)
                      ++|++++.+.. +++|.+.|+.+.++.+.+.... .....+.+   .+... |+.+                 ..++.+.
T Consensus        99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt  178 (595)
T 1fwx_A           99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT  178 (595)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred             cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEE
Confidence            47788776655 5579999999999888665432 22344443   33333 3332                 2234678


Q ss_pred             EEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCC--------------------------------------cEE
Q 008496          382 VCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDV--------------------------------------TAK  423 (563)
Q Consensus       382 ~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg--------------------------------------~i~  423 (563)
                      +.|..+.+.+.++.--. ....++++|+|+++++++.+.                                      .|.
T Consensus       179 vID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~  257 (595)
T 1fwx_A          179 AVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVK  257 (595)
T ss_dssp             EEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEE
T ss_pred             EEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEE
Confidence            88888776665554211 345678999999988887553                                      244


Q ss_pred             EEeCCC--Cce-eeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCe------------EEEEec
Q 008496          424 IWNMKQ--DKY-VHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK------------LLYSLN  488 (563)
Q Consensus       424 iwd~~~--~~~-~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~------------~~~~~~  488 (563)
                      |.|..+  ++. +..+.. .....++.++|+|.        .+++++..+.+|.++|+.+.+            .+..+.
T Consensus       258 VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk--------~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~  328 (595)
T 1fwx_A          258 VVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKK--------HLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE  328 (595)
T ss_dssp             EEECSGGGCCSSEEEEEE-ESSCCCEEECTTSS--------EEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB
T ss_pred             EEeCcccCCceeEEEEec-CCCceEEEEcCCCC--------EEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC
Confidence            555544  222 222211 12234566667664        678888889999999998642            334443


Q ss_pred             CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCC----------CeeEEEEecCCCEEEEE------EcCCCCEEEEEE
Q 008496          489 GHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKE----------GKIVKTYTGNGGIFEVC------WNKEGDKIAACF  551 (563)
Q Consensus       489 ~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~----------~~~~~~~~~~~~i~~l~------w~~~g~~la~~~  551 (563)
                      - ...-..++|+|+|...++.-.|++|.+||+.+          ..++.....+..+-...      .+|||++|.++-
T Consensus       329 v-G~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~N  406 (595)
T 1fwx_A          329 L-GLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLS  406 (595)
T ss_dssp             C-CSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEE
T ss_pred             C-CCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcC
Confidence            2 23458899999995555677899999999987          56777776654443334      479999998873

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.71  E-value=7.1e-06  Score=76.24  Aligned_cols=189  Identities=11%  Similarity=0.097  Sum_probs=127.4

Q ss_pred             EEEecCC-CceEEEEeC--CCeEEEEEcCCCcceeeecCCCc-ceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeee
Q 008496          361 LDVDWRN-NVSFATSST--DNMIYVCKIGENRPIKTFAGHQG-EVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDL  436 (563)
Q Consensus       361 ~~~~~~~-~~~~~~~~~--d~~i~~~~~~~~~~~~~~~~h~~-~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~  436 (563)
                      ..+.+.+ ...+++.+.  ++.|.+.|..+++.+..+.-... ....++++. +++.++.-.++.+.++|..+.+.+.++
T Consensus        24 ~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g-~~lyv~t~~~~~v~viD~~t~~v~~~i  102 (266)
T 2iwa_A           24 QGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLN-EKLYQVVWLKNIGFIYDRRTLSNIKNF  102 (266)
T ss_dssp             EEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEET-TEEEEEETTCSEEEEEETTTTEEEEEE
T ss_pred             ccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeC-CEEEEEEecCCEEEEEECCCCcEEEEE
Confidence            4555555 334444443  67999999999888776542111 223455542 344455556899999999999888777


Q ss_pred             cccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCC--CC---CEEEEEEcCCCCEEEEEeC
Q 008496          437 REHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGH--RE---PVYSLAFSPTGEYLASGSL  511 (563)
Q Consensus       437 ~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h--~~---~i~~l~~spdg~~lasgs~  511 (563)
                      ......-..+  ++++.        .++++ ..++.|.++|..+.+.+..+.--  ..   ..+.+.|. +|..++....
T Consensus       103 ~~g~~~g~gl--t~Dg~--------~l~vs-~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~  170 (266)
T 2iwa_A          103 THQMKDGWGL--ATDGK--------ILYGS-DGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQ  170 (266)
T ss_dssp             ECCSSSCCEE--EECSS--------SEEEE-CSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETT
T ss_pred             ECCCCCeEEE--EECCC--------EEEEE-CCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCC
Confidence            5321122233  34443        23444 46889999999998887766421  11   36788888 7866666666


Q ss_pred             CCcEEEEecCCCeeEEEEecC--------------CCEEEEEEcCCCCEEEEE-ECCCeEEEEEee
Q 008496          512 DKSMHIWSLKEGKIVKTYTGN--------------GGIFEVCWNKEGDKIAAC-FANHTVCVLDFR  562 (563)
Q Consensus       512 dg~v~iw~~~~~~~~~~~~~~--------------~~i~~l~w~~~g~~la~~-~~~~~v~v~~~~  562 (563)
                      ++.|.+-|..+++++..+...              .....++|+|++++|.++ -....+.++++.
T Consensus       171 ~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~  236 (266)
T 2iwa_A          171 TDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLH  236 (266)
T ss_dssp             SSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEE
T ss_pred             CCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEe
Confidence            889999999999999988642              246899999999866655 456788888874

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.70  E-value=8.8e-06  Score=85.48  Aligned_cols=82  Identities=15%  Similarity=0.278  Sum_probs=58.1

Q ss_pred             CCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEecCCCEE--EEEEcCCCC-
Q 008496          469 FDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIF--EVCWNKEGD-  545 (563)
Q Consensus       469 ~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~~~~i~--~l~w~~~g~-  545 (563)
                      .+|.|..||+.+++.+++... ..++..-...-.+..++.|+.|+.|+.||.++|+++..+....++.  -+.|..+|+ 
T Consensus       451 ~~G~l~A~D~~tG~~~W~~~~-~~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~~~~P~~y~~~G~q  529 (599)
T 1w6s_A          451 GLGQIKAYNAITGDYKWEKME-RFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQ  529 (599)
T ss_dssp             CCEEEEEECTTTCCEEEEEEE-SSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred             CcCeEEEEECCCCCEEeEecC-CCCccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEeeCCCCcEeccEEEEeCCEE
Confidence            458999999999999888752 2222221223356677789999999999999999999887654432  366778887 


Q ss_pred             EEEEEE
Q 008496          546 KIAACF  551 (563)
Q Consensus       546 ~la~~~  551 (563)
                      ++++..
T Consensus       530 yv~~~~  535 (599)
T 1w6s_A          530 YVAIYY  535 (599)
T ss_dssp             EEEEEE
T ss_pred             EEEEEc
Confidence            444443

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.67  E-value=0.0002  Score=78.43  Aligned_cols=322  Identities=11%  Similarity=0.023  Sum_probs=186.8

Q ss_pred             CceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEEeCC
Q 008496          216 SEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYD  295 (563)
Q Consensus       216 ~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~d  295 (563)
                      ..|.++...++|.+.+ |+..+-+.+++..+........ ...  ..+.............|.++...++|.+ -.|+.+
T Consensus       258 ~~i~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~-~~f--~~~~~~~~~~~l~~~~v~~i~~D~~g~l-Wigt~~  332 (781)
T 3v9f_A          258 SYIFSIKQLKDNKLWI-ATELNGIMILDLQQNQFLLPEQ-IRF--EFIREGDNNYSLSNASARYIFQDSFNNI-WIGTWG  332 (781)
T ss_dssp             CCEEEEEECTTSEEEE-EESSSCEEEEETTCC----------C--EEECBCSSTTSBSSSCEEEEEECSSCCE-EEEEBS
T ss_pred             ceEEEEEECCCCCEEE-EeCCCCeEEECCCCCeeeeeec-ccc--ccccCCCCCCCCCCCeEEEEEEeCCCCE-EEEecC
Confidence            5688888888877655 4443456777765433210000 000  0000000011123457999999998874 457777


Q ss_pred             CeEEEEEcCCceeEeec----------cCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEe---eecccCeEE
Q 008496          296 GQARIWSTNGDLKCTLS----------KHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQF---EFHSGPTLD  362 (563)
Q Consensus       296 g~i~vw~~~~~~~~~~~----------~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~---~~~~~~~~~  362 (563)
                      +-|..++........+.          .....|.++...++|. |..|+.++-+..||..++......   ......+.+
T Consensus       333 ~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~  411 (781)
T 3v9f_A          333 GGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGK-LWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLC  411 (781)
T ss_dssp             SCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSC-EEEEEBSSCEEEEETTEEEEECC-----CCCSBEEE
T ss_pred             CeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCC-EEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEE
Confidence            77888887644332221          1235689998888776 445665667888998765433211   112234555


Q ss_pred             EecCCCceEEEEeCCCeEEEEEcCCCcceeeec---CCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeccc
Q 008496          363 VDWRNNVSFATSSTDNMIYVCKIGENRPIKTFA---GHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREH  439 (563)
Q Consensus       363 ~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~---~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~  439 (563)
                      +....+..+..+..++.++.++..+.+. ..+.   .....|.++...+++.+.+ |+. +-+.+||..+++........
T Consensus       412 i~~d~~g~lWigt~~~Gl~~~~~~~~~~-~~~~~~~~~~~~v~~i~~d~~g~lwi-gt~-~Gl~~~~~~~~~~~~~~~~~  488 (781)
T 3v9f_A          412 SLKDSEGNLWFGTYLGNISYYNTRLKKF-QIIELEKNELLDVRVFYEDKNKKIWI-GTH-AGVFVIDLASKKVIHHYDTS  488 (781)
T ss_dssp             EEECTTSCEEEEETTEEEEEECSSSCEE-EECCSTTTCCCCEEEEEECTTSEEEE-EET-TEEEEEESSSSSCCEEECTT
T ss_pred             EEECCCCCEEEEeccCCEEEEcCCCCcE-EEeccCCCCCCeEEEEEECCCCCEEE-EEC-CceEEEeCCCCeEEecccCc
Confidence            5554445555566556677777654432 2222   1345788999988887655 444 45888888776543222111


Q ss_pred             -----CCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecC---CCCCEEEEEEcCCCCEEEEEeC
Q 008496          440 -----SKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNG---HREPVYSLAFSPTGEYLASGSL  511 (563)
Q Consensus       440 -----~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~---h~~~i~~l~~spdg~~lasgs~  511 (563)
                           ...|.++...+++.          |-.|+.++-|..||..+++...-...   ....|.++...++|.+.++. .
T Consensus       489 ~~~~~~~~i~~i~~d~~g~----------lWigt~~~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T-~  557 (781)
T 3v9f_A          489 NSQLLENFVRSIAQDSEGR----------FWIGTFGGGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLAT-G  557 (781)
T ss_dssp             TSSCSCSCEEEEEECTTCC----------EEEEESSSCEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEEE-T
T ss_pred             ccccccceeEEEEEcCCCC----------EEEEEcCCCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEEE-C
Confidence                 35688888777663          33455544477788876654332211   13468999999999866644 4


Q ss_pred             CCcEEEEecCCCeeEEEEec-----CCCEEEEEEcCCCCEEEEEECCCeEEEEE
Q 008496          512 DKSMHIWSLKEGKIVKTYTG-----NGGIFEVCWNKEGDKIAACFANHTVCVLD  560 (563)
Q Consensus       512 dg~v~iw~~~~~~~~~~~~~-----~~~i~~l~w~~~g~~la~~~~~~~v~v~~  560 (563)
                      .|.|..||..+++. ..+..     ...|.++..+++|+..+++ .+| +..+|
T Consensus       558 ~Glv~~~d~~~~~~-~~~~~~~gl~~~~i~~i~~d~~g~lW~~t-~~G-l~~~~  608 (781)
T 3v9f_A          558 EGLVCFPSARNFDY-QVFQRKEGLPNTHIRAISEDKNGNIWAST-NTG-ISCYI  608 (781)
T ss_dssp             TEEEEESCTTTCCC-EEECGGGTCSCCCCCEEEECSSSCEEEEC-SSC-EEEEE
T ss_pred             CCceEEECCCCCcE-EEccccCCCCCceEEEEEECCCCCEEEEc-CCc-eEEEE
Confidence            77558999887764 33432     2246788889888765544 444 55554

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.66  E-value=4.6e-06  Score=76.62  Aligned_cols=180  Identities=13%  Similarity=0.126  Sum_probs=125.5

Q ss_pred             EEEEEeCCCCCEEEEeeCCC--cEEEEECCCCceeEEeeecccCe-EEEecCCCceEEEEeCCCeEEEEEcCCCcceeee
Q 008496          318 IFSLKWNKKGDYLLTGSCDK--TAIVWDVKTEEWKQQFEFHSGPT-LDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTF  394 (563)
Q Consensus       318 V~~l~~~~~~~~l~s~s~D~--~v~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~  394 (563)
                      ..+|.|+ ++....+.+.+|  +|+++|+.+++....+....... ..+...++..+++.-.++.++++|..+.+.+.++
T Consensus        45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti  123 (262)
T 3nol_A           45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRSF  123 (262)
T ss_dssp             EEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEEE
T ss_pred             cceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEEE
Confidence            4678888 565566666665  89999999999988876544321 2344456677777778999999999998888887


Q ss_pred             cCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeccc--C---CCEEEEEEccCCCCCCCCCCcEEEEEEeC
Q 008496          395 AGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREH--S---KEIYTIRWSPTGSGTNNPNQQLILASASF  469 (563)
Q Consensus       395 ~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~--~---~~i~~~~~~p~~~~~~~~~~~~~l~s~s~  469 (563)
                      .-.. .-..++  ++++.|+.+..++.|.++|..+.+.+..+...  .   ..+..+.|. +|.         +.+..-.
T Consensus       124 ~~~~-eG~glt--~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~---------lyan~w~  190 (262)
T 3nol_A          124 NYDG-EGWGLT--HNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGE---------IFANVWQ  190 (262)
T ss_dssp             ECSS-CCCCEE--ECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTE---------EEEEETT
T ss_pred             ECCC-CceEEe--cCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCE---------EEEEEcc
Confidence            6322 223444  45665555555788999999998877766532  1   223456665 332         4566667


Q ss_pred             CCeEEEEeCCCCeEEEEecCC------------CCCEEEEEEcCCCCEEEEEeC
Q 008496          470 DSTVKLWDVELGKLLYSLNGH------------REPVYSLAFSPTGEYLASGSL  511 (563)
Q Consensus       470 dg~i~iwd~~~~~~~~~~~~h------------~~~i~~l~~spdg~~lasgs~  511 (563)
                      ++.|.+.|..+++.+..+.-.            ....+.|||+|+++.|...+.
T Consensus       191 ~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK  244 (262)
T 3nol_A          191 TNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK  244 (262)
T ss_dssp             SSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred             CCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence            889999999999998876531            123588999999877766554

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.66  E-value=0.00037  Score=76.36  Aligned_cols=314  Identities=10%  Similarity=0.038  Sum_probs=186.0

Q ss_pred             CceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeec-ccccCCCCeEEEEECCCCCEEEEEeC
Q 008496          216 SEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKG-RTNEKSKDVTTLDWNGEGTLLATGSY  294 (563)
Q Consensus       216 ~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~V~~l~~s~~g~~l~sg~~  294 (563)
                      ..|.++...+++.+.+. +.+ -+.+|+..++....           +..... ........|.++...++|.+. .|+.
T Consensus       211 ~~i~~i~~d~~g~lwig-t~~-Gl~~~d~~~~~~~~-----------~~~~~~~~~~l~~~~i~~i~~d~~g~lW-igt~  276 (781)
T 3v9f_A          211 NDVRCIYKDTNGNIWIG-TSK-GLALFNANTETFTN-----------FHNNPGNIHGALSSYIFSIKQLKDNKLW-IATE  276 (781)
T ss_dssp             SSEEEEEECTTCCEEEE-ETT-EEEEEETTTTEEEC----------------------CCCCEEEEEECTTSEEE-EEES
T ss_pred             CceeEEEEcCCCCEEEE-eCC-cHheECCCCCcEEE-----------EEcCCCccccccCceEEEEEECCCCCEE-EEeC
Confidence            46888888888876654 334 57788865432110           000000 001124569999998888754 4666


Q ss_pred             CCeEEEEEcCCceeEeec---------------cCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEee-----
Q 008496          295 DGQARIWSTNGDLKCTLS---------------KHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFE-----  354 (563)
Q Consensus       295 dg~i~vw~~~~~~~~~~~---------------~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~-----  354 (563)
                      .+-|.+++........+.               -....|.++...++|. |-.|+.++-|..++..+..+.....     
T Consensus       277 ~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~  355 (781)
T 3v9f_A          277 LNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQM  355 (781)
T ss_dssp             SSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CC
T ss_pred             CCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCcccc
Confidence            456778887654322111               1345799999888886 5556667778899887665433211     


Q ss_pred             ----ecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeee----cCCCcceeEEEECCCCCEEEEEeCCCcEEEEe
Q 008496          355 ----FHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTF----AGHQGEVNCVKWDPTGSLLASCSDDVTAKIWN  426 (563)
Q Consensus       355 ----~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~----~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd  426 (563)
                          .....+.++....+..+..++.++-+..++...... ..+    ......|.++...+++.+.+ |+.++-+..++
T Consensus       356 ~~~~l~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~-~~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~  433 (781)
T 3v9f_A          356 NESSLSNKVVSSVCDDGQGKLWIGTDGGGINVFENGKRVA-IYNKENRELLSNSVLCSLKDSEGNLWF-GTYLGNISYYN  433 (781)
T ss_dssp             CSSCCSSSCEEEEEECTTSCEEEEEBSSCEEEEETTEEEE-ECC-----CCCSBEEEEEECTTSCEEE-EETTEEEEEEC
T ss_pred             ccCCCCCcceEEEEEcCCCCEEEEeCCCcEEEEECCCCeE-EEccCCCCCCCcceEEEEECCCCCEEE-EeccCCEEEEc
Confidence                112345555555545555566556677777654321 111    12345688999988888654 66667788898


Q ss_pred             CCCCceeeeec--ccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCC-----CCCEEEEEE
Q 008496          427 MKQDKYVHDLR--EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGH-----REPVYSLAF  499 (563)
Q Consensus       427 ~~~~~~~~~~~--~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h-----~~~i~~l~~  499 (563)
                      ..+++...-..  .....|.++...+++.          |-.|+. +-|..||..+++........     ...|.++..
T Consensus       434 ~~~~~~~~~~~~~~~~~~v~~i~~d~~g~----------lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~  502 (781)
T 3v9f_A          434 TRLKKFQIIELEKNELLDVRVFYEDKNKK----------IWIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQ  502 (781)
T ss_dssp             SSSCEEEECCSTTTCCCCEEEEEECTTSE----------EEEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEE
T ss_pred             CCCCcEEEeccCCCCCCeEEEEEECCCCC----------EEEEEC-CceEEEeCCCCeEEecccCcccccccceeEEEEE
Confidence            87765432211  1345688887766552          333445 56888998776543322211     357999999


Q ss_pred             cCCCCEEEEEeCCCcEEEEecCCCeeEEEEec-----CCCEEEEEEcCCCCEEEEEECCCeEEEEE
Q 008496          500 SPTGEYLASGSLDKSMHIWSLKEGKIVKTYTG-----NGGIFEVCWNKEGDKIAACFANHTVCVLD  560 (563)
Q Consensus       500 spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~-----~~~i~~l~w~~~g~~la~~~~~~~v~v~~  560 (563)
                      .++|.+.+.....| |..|+..+++.. .+..     ...|.++..+++|...++. .+|-+..||
T Consensus       503 d~~g~lWigt~~~G-l~~~~~~~~~~~-~~~~~~~l~~~~i~~i~~d~~g~lWi~T-~~Glv~~~d  565 (781)
T 3v9f_A          503 DSEGRFWIGTFGGG-VGIYTPDMQLVR-KFNQYEGFCSNTINQIYRSSKGQMWLAT-GEGLVCFPS  565 (781)
T ss_dssp             CTTCCEEEEESSSC-EEEECTTCCEEE-EECTTTTCSCSCEEEEEECTTSCEEEEE-TTEEEEESC
T ss_pred             cCCCCEEEEEcCCC-EEEEeCCCCeEE-EccCCCCCCCCeeEEEEECCCCCEEEEE-CCCceEEEC
Confidence            99998766433345 788998776543 3432     2458899999999865554 354325554

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.64  E-value=3.3e-05  Score=74.25  Aligned_cols=225  Identities=12%  Similarity=0.100  Sum_probs=134.4

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCeEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEEEeeCCC--cEEEEECCCCceeEE
Q 008496          275 KDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDK--TAIVWDVKTEEWKQQ  352 (563)
Q Consensus       275 ~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~--~v~iwd~~~~~~~~~  352 (563)
                      .....++|+++|+++++-..++.|..|+.++.....+. ....+.++++.++|+.+++.....  .|..+|..+++....
T Consensus        32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~  110 (306)
T 2p4o_A           32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETL  110 (306)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEE
T ss_pred             CCcceEEECCCCCEEEEeCCCCeEEEECCCCceEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEE
Confidence            34678999999998887778899999998886554333 234678999999998655543322  466778777775443


Q ss_pred             eeecccC-eEEE-ecCCCceEEEEeCCCeEEEEEcCCCc-ceeee---------cCCCcceeEEEECCCCCEE-EEEeCC
Q 008496          353 FEFHSGP-TLDV-DWRNNVSFATSSTDNMIYVCKIGENR-PIKTF---------AGHQGEVNCVKWDPTGSLL-ASCSDD  419 (563)
Q Consensus       353 ~~~~~~~-~~~~-~~~~~~~~~~~~~d~~i~~~~~~~~~-~~~~~---------~~h~~~i~~~~~~~~~~~l-as~s~d  419 (563)
                      ....... ...+ .|.....+++...++.|++++..... .+...         .+.-...+.+  +|+++.| ++-+..
T Consensus       111 ~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~  188 (306)
T 2p4o_A          111 LTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEK  188 (306)
T ss_dssp             EECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTT
T ss_pred             EeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCC
Confidence            3221111 1111 25444445555568888888876432 11100         0111234555  7787654 555667


Q ss_pred             CcEEEEeCCC-Cce--eeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEE--EecCCCCCE
Q 008496          420 VTAKIWNMKQ-DKY--VHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLY--SLNGHREPV  494 (563)
Q Consensus       420 g~i~iwd~~~-~~~--~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~--~~~~h~~~i  494 (563)
                      +.|..|++.. +..  ...+.. ......+++.++|.         +.++....+.|.++|.. ++...  .+.......
T Consensus       189 ~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~dG~---------l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p  257 (306)
T 2p4o_A          189 MLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVEGN---------LYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGS  257 (306)
T ss_dssp             TEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTTCC---------EEEECBTTCCEEEECTT-CCEEEEECGGGTCTTE
T ss_pred             CEEEEEEeCCCCCCCccEEEec-cCCCCCeEECCCCC---------EEEEeCCCCeEEEECCC-CCEEEEeecccccCCc
Confidence            8999999864 221  111110 01223455556553         45555567889999975 65532  233223457


Q ss_pred             EEEEEc---CCCCEEEEEeCCC
Q 008496          495 YSLAFS---PTGEYLASGSLDK  513 (563)
Q Consensus       495 ~~l~~s---pdg~~lasgs~dg  513 (563)
                      ++++|.   ||+..|..++..+
T Consensus       258 ~~~a~~g~~~d~~~LyVt~~~~  279 (306)
T 2p4o_A          258 TAVAFGQTEGDCTAIYVVTNGG  279 (306)
T ss_dssp             EEEEECCSTTTTTEEEEEECTT
T ss_pred             eEEEEecccCCCCEEEEECCCC
Confidence            999998   8987776665543

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.62  E-value=8.2e-05  Score=78.17  Aligned_cols=82  Identities=18%  Similarity=0.438  Sum_probs=60.0

Q ss_pred             CCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEecCCCEE--EEEEcCCCC-
Q 008496          469 FDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIF--EVCWNKEGD-  545 (563)
Q Consensus       469 ~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~~~~i~--~l~w~~~g~-  545 (563)
                      .+|.|..||+.+|+.+++.... .++..-.....+.+++.|+.||.++.||.++|+++..+....++.  -+.|..+|+ 
T Consensus       464 ~~G~l~A~D~~tG~~~W~~~~~-~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~q  542 (582)
T 1flg_A          464 HVGSLRAMDPVSGKVVWEHKEH-LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQ  542 (582)
T ss_dssp             CSEEEEEECTTTCCEEEEEEES-SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred             CcceEEEEECCCCCEEEEecCC-CCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCEE
Confidence            3688999999999998877533 232222222246678889999999999999999999998766554  377888997 


Q ss_pred             EEEEEE
Q 008496          546 KIAACF  551 (563)
Q Consensus       546 ~la~~~  551 (563)
                      ++++..
T Consensus       543 Yv~~~~  548 (582)
T 1flg_A          543 YLGVTV  548 (582)
T ss_dssp             EEEEEE
T ss_pred             EEEEEc
Confidence            444443

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.60  E-value=4.6e-05  Score=73.77  Aligned_cols=258  Identities=9%  Similarity=0.026  Sum_probs=133.4

Q ss_pred             CceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeec-------------ccccCCCCeEEEEE
Q 008496          216 SEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKG-------------RTNEKSKDVTTLDW  282 (563)
Q Consensus       216 ~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~V~~l~~  282 (563)
                      ....+++|+|+++++.++..++.|..|+..++...           .+.....             ........+..+++
T Consensus        19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-----------~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~   87 (322)
T 2fp8_A           19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-----------DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISY   87 (322)
T ss_dssp             SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-----------EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEE
T ss_pred             CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-----------EEecccccccccccccccchhccccCCCCceEEE
Confidence            34567899999997888888899999986543210           0100000             00001134788999


Q ss_pred             CC-CCCEEEEEeCCCeEEEEEcCCceeEeeccC-----CCCEEEEEeCC-CCCEEEEeeCCCcEEEEECCCCceeEEeee
Q 008496          283 NG-EGTLLATGSYDGQARIWSTNGDLKCTLSKH-----KGPIFSLKWNK-KGDYLLTGSCDKTAIVWDVKTEEWKQQFEF  355 (563)
Q Consensus       283 s~-~g~~l~sg~~dg~i~vw~~~~~~~~~~~~h-----~~~V~~l~~~~-~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~  355 (563)
                      .+ +|+++ .+...+.+..++..+.....+...     ......+++.+ +|+..++-....    +....  ..     
T Consensus        88 ~~~~g~l~-v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~----~~~~~--~~-----  155 (322)
T 2fp8_A           88 NLQNNQLY-IVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTL----YDDRG--VQ-----  155 (322)
T ss_dssp             ETTTTEEE-EEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSS----CCTTC--HH-----
T ss_pred             cCCCCcEE-EEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCccc----ccccc--cc-----
Confidence            98 66544 454445588888765433333211     12345666666 665444322110    00000  00     


Q ss_pred             cccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEE-EEeCCCcEEEEeCCCCc--e
Q 008496          356 HSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLA-SCSDDVTAKIWNMKQDK--Y  432 (563)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~la-s~s~dg~i~iwd~~~~~--~  432 (563)
                                   ..++....++.|+.++....... .+...-...+.++++|+++.|. +-+..+.|.+|++....  .
T Consensus       156 -------------~~~~~~~~~g~v~~~d~~~~~~~-~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~  221 (322)
T 2fp8_A          156 -------------QIMDTSDKTGRLIKYDPSTKETT-LLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGT  221 (322)
T ss_dssp             -------------HHHHHTCCCEEEEEEETTTTEEE-EEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTC
T ss_pred             -------------eehcccCCCceEEEEeCCCCEEE-EeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCc
Confidence                         00000011223344443322211 1111112356799999998554 44567889999887421  1


Q ss_pred             eeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEe---------CCCeEEEEeCCCCeEEEEecCC----CCCEEEEEE
Q 008496          433 VHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASAS---------FDSTVKLWDVELGKLLYSLNGH----REPVYSLAF  499 (563)
Q Consensus       433 ~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s---------~dg~i~iwd~~~~~~~~~~~~h----~~~i~~l~~  499 (563)
                      ...+....+ ...+++.++|.        ++++...         ..+.|..+|.. ++.+..+...    -..++++++
T Consensus       222 ~~~~~~~~g-P~gi~~d~~G~--------l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~  291 (322)
T 2fp8_A          222 AEVLVKIPN-PGNIKRNADGH--------FWVSSSEELDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQE  291 (322)
T ss_dssp             EEEEEECSS-EEEEEECTTSC--------EEEEEEEETTSSTTSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEE
T ss_pred             cceEEeCCC-CCCeEECCCCC--------EEEEecCcccccccCCCccEEEEECCC-CCEEEEEECCCCCccccceEEEE
Confidence            111111122 56677777653        4444433         14678888874 7766665432    234666776


Q ss_pred             cCCCCEEEEEeCCCcEEEEecC
Q 008496          500 SPTGEYLASGSLDKSMHIWSLK  521 (563)
Q Consensus       500 spdg~~lasgs~dg~v~iw~~~  521 (563)
                       .+++++++....+.|.++++.
T Consensus       292 -~~g~L~v~~~~~~~i~~~~~~  312 (322)
T 2fp8_A          292 -HDGLLYIGTLFHGSVGILVYD  312 (322)
T ss_dssp             -ETTEEEEECSSCSEEEEEEC-
T ss_pred             -eCCEEEEeecCCCceEEEecc
Confidence             466666666667888888875

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=98.59  E-value=0.00025  Score=68.81  Aligned_cols=266  Identities=11%  Similarity=0.063  Sum_probs=143.4

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCeEEEEEcCCce-eEeec----cCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCce
Q 008496          275 KDVTTLDWNGEGTLLATGSYDGQARIWSTNGDL-KCTLS----KHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEW  349 (563)
Q Consensus       275 ~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~-~~~~~----~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~  349 (563)
                      ..+.++.+.+.+..+++ +..|.| +...++.. -....    .....+.++.|.+ + .++.++.++.|..-.-....+
T Consensus        36 ~~~~~v~~~~~~~~~~~-G~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~-~~~~~g~~g~i~~S~DgG~tW  111 (327)
T 2xbg_A           36 ATILDMSFIDRHHGWLV-GVNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQG-N-EGWIVGEPPIMLHTTDGGQSW  111 (327)
T ss_dssp             SCEEEEEESSSSCEEEE-ETTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEET-T-EEEEEEETTEEEEESSTTSSC
T ss_pred             CcEEEEEECCCCcEEEE-cCCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecC-C-eEEEEECCCeEEEECCCCCCc
Confidence            46889999888887774 556765 34444421 11111    1244688999876 3 344455566554432112223


Q ss_pred             eEEeee--cccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcc-eeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEe
Q 008496          350 KQQFEF--HSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRP-IKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWN  426 (563)
Q Consensus       350 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~-~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd  426 (563)
                      ......  ....+..+...++..+...+.++.|+.-. +.++. .....++...+..+.+.+++.+++.+...+..+-+|
T Consensus       112 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~v~~S~-DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d  190 (327)
T 2xbg_A          112 SQIPLDPKLPGSPRLIKALGNGSAEMITNVGAIYRTK-DSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWE  190 (327)
T ss_dssp             EECCCCTTCSSCEEEEEEEETTEEEEEETTCCEEEES-STTSSEEEEECSCCCCEEEEEECTTSCEEEEETTSSEEEEEC
T ss_pred             eECccccCCCCCeEEEEEECCCCEEEEeCCccEEEEc-CCCCCCEEeecCCCcceEEEEEcCCCcEEEEECCCcEEEEeC
Confidence            322111  11233444443333343444455554322 11211 112234456788999999998887765544444455


Q ss_pred             C--CCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEec-C---CCCCEEEEEEc
Q 008496          427 M--KQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLN-G---HREPVYSLAFS  500 (563)
Q Consensus       427 ~--~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~---h~~~i~~l~~s  500 (563)
                      .  .+...+.  ......+..+.+.|++.         + ..++.+|.+++++...++.-..+. .   +...+.+++|.
T Consensus       191 ~gG~tW~~~~--~~~~~~~~~~~~~~~g~---------~-~~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~  258 (327)
T 2xbg_A          191 PGQTAWEPHN--RTTSRRLHNMGFTPDGR---------L-WMIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYR  258 (327)
T ss_dssp             TTCSSCEEEE--CCSSSCEEEEEECTTSC---------E-EEEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEES
T ss_pred             CCCCceeECC--CCCCCccceeEECCCCC---------E-EEEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEec
Confidence            3  3333332  23455678888877653         2 345567888777533233322222 1   22358999999


Q ss_pred             CCCCEEEEEeCCCcEEEEecCCCeeEEEEec----CCCEEEEEEcCCCCEEEEEECCCeEEEEE
Q 008496          501 PTGEYLASGSLDKSMHIWSLKEGKIVKTYTG----NGGIFEVCWNKEGDKIAACFANHTVCVLD  560 (563)
Q Consensus       501 pdg~~lasgs~dg~v~iw~~~~~~~~~~~~~----~~~i~~l~w~~~g~~la~~~~~~~v~v~~  560 (563)
                      |++.+++++. +|.| .+....|+--.....    ...++++.|.+++. +.++..+|.+.-++
T Consensus       259 ~~~~~~~~g~-~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G~~G~i~~~~  319 (327)
T 2xbg_A          259 TPNEVWLAGG-AGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQ-GFILGQKGILLRYV  319 (327)
T ss_dssp             SSSCEEEEES-TTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTE-EEEECSTTEEEEEC
T ss_pred             CCCEEEEEeC-CCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCc-eEEEcCCceEEEEc
Confidence            9888777655 6666 444444543222221    24578899986555 55555777765543

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.57  E-value=4.8e-06  Score=89.37  Aligned_cols=269  Identities=15%  Similarity=0.129  Sum_probs=145.6

Q ss_pred             EEEECC-CCCEEEEeeCCC-----------cEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCC
Q 008496          220 ACAWSP-AGSLLASGSGDS-----------TARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT  287 (563)
Q Consensus       220 ~~~~sp-~~~~latgs~D~-----------~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~  287 (563)
                      ++++.| ++++++.||.+.           .+.+||+.+++...      ..  .+..      .......++++..+|+
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~------~~--~~~~------~~~~~~~~~~~~~~g~  255 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSD------RT--VTVT------KHDMFCPGISMDGNGQ  255 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCC------CE--EEEC------SCCCSSCEEEECTTSC
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEe------Cc--ccCC------CCCCccccccCCCCCC
Confidence            556777 889999988543           57788877654211      11  0100      1112233467788999


Q ss_pred             EEEEEeCC-CeEEEEEcCCceeEeeccCC--CCEEEEEeCCCCCEEEEee-CC-----CcEEEEECCCCceeEEeeeccc
Q 008496          288 LLATGSYD-GQARIWSTNGDLKCTLSKHK--GPIFSLKWNKKGDYLLTGS-CD-----KTAIVWDVKTEEWKQQFEFHSG  358 (563)
Q Consensus       288 ~l~sg~~d-g~i~vw~~~~~~~~~~~~h~--~~V~~l~~~~~~~~l~s~s-~D-----~~v~iwd~~~~~~~~~~~~~~~  358 (563)
                      +++.|+.+ ..+.+||.....-..+....  ..-.++...++|+.++.|+ .+     ..+.+||+.+..|...-.....
T Consensus       256 lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~  335 (656)
T 1k3i_A          256 IVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVN  335 (656)
T ss_dssp             EEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSG
T ss_pred             EEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCcccc
Confidence            99999854 58999997644322221111  1112445567888888888 44     5799999998887653110000


Q ss_pred             CeE-----EEecCCCceEEEEeCC---------CeEEEEEcCCCcceeeecCCC---------cceeEEEEC-CCCCEEE
Q 008496          359 PTL-----DVDWRNNVSFATSSTD---------NMIYVCKIGENRPIKTFAGHQ---------GEVNCVKWD-PTGSLLA  414 (563)
Q Consensus       359 ~~~-----~~~~~~~~~~~~~~~d---------~~i~~~~~~~~~~~~~~~~h~---------~~i~~~~~~-~~~~~la  414 (563)
                      +..     .+.-.++..++.++.+         ..+..|+.....-......+.         ..-.++.+. .++++++
T Consensus       336 p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v  415 (656)
T 1k3i_A          336 PMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILT  415 (656)
T ss_dssp             GGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEE
T ss_pred             ccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEE
Confidence            100     0111233344444433         345667766544222111111         112344443 3678888


Q ss_pred             EEeCCC-----------cEEEEeCCCCceeeee--cccCCCE-EEEEEccCCCCCCCCCCcEEEEEEeCC----------
Q 008496          415 SCSDDV-----------TAKIWNMKQDKYVHDL--REHSKEI-YTIRWSPTGSGTNNPNQQLILASASFD----------  470 (563)
Q Consensus       415 s~s~dg-----------~i~iwd~~~~~~~~~~--~~~~~~i-~~~~~~p~~~~~~~~~~~~~l~s~s~d----------  470 (563)
                      .|+.++           .+.+||..+.......  ..+.... .+....|++.         +++.|+.+          
T Consensus       416 ~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~---------i~v~GG~~~~~~~~~~~~  486 (656)
T 1k3i_A          416 FGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGS---------TFITGGQRRGIPFEDSTP  486 (656)
T ss_dssp             ECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSC---------EEEECCBSBCCTTCCCSB
T ss_pred             EeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCC---------EEEECCcccCcCcCCCCc
Confidence            887543           5778887766544322  1122221 2333445543         55666643          


Q ss_pred             -CeEEEEeCCCCeEEE--EecCCCCCEEEEEEcCCCCEEEEEeC
Q 008496          471 -STVKLWDVELGKLLY--SLNGHREPVYSLAFSPTGEYLASGSL  511 (563)
Q Consensus       471 -g~i~iwd~~~~~~~~--~~~~h~~~i~~l~~spdg~~lasgs~  511 (563)
                       ..+.+||..+.+-..  .+...+....+..+.|||+.++.||.
T Consensus       487 ~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~  530 (656)
T 1k3i_A          487 VFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG  530 (656)
T ss_dssp             CCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred             ccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence             468999987765322  11112222345567899999999985

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.52  E-value=0.00022  Score=69.79  Aligned_cols=241  Identities=9%  Similarity=0.001  Sum_probs=147.7

Q ss_pred             EEEEECCCCCEEEEEeCCCeEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEEEe-eCCCcEEEEECCCCceeEEeee-
Q 008496          278 TTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTG-SCDKTAIVWDVKTEEWKQQFEF-  355 (563)
Q Consensus       278 ~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~-s~D~~v~iwd~~~~~~~~~~~~-  355 (563)
                      +|.+..+++ +|+.+. ...|+..+.++.....+......+.+++|++.+..|+.. ...+.|..+++........+.. 
T Consensus        37 ~C~~~~~~~-~ll~~~-~~~I~~i~~~g~~~~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~  114 (349)
T 3v64_C           37 SCKALGPEP-VLLFAN-RIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTG  114 (349)
T ss_dssp             CEEESSSCC-EEEEEC-BSCEEEECTTSCCEEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS
T ss_pred             cccccccCc-eeEeec-ccceEEEeCCCCeeEEeecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCC
Confidence            454545533 333333 345777787775544443334457899999876666544 4567899999876654333221 


Q ss_pred             -cccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEE-EEEeCC-CcEEEEeCCCCce
Q 008496          356 -HSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLL-ASCSDD-VTAKIWNMKQDKY  432 (563)
Q Consensus       356 -~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l-as~s~d-g~i~iwd~~~~~~  432 (563)
                       ....-+.++|.....+++-...+.|.+.+.........+...-...+.++++|.+..| ++-... +.|..+++.....
T Consensus       115 ~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~  194 (349)
T 3v64_C          115 LESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGR  194 (349)
T ss_dssp             CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC
T ss_pred             CCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCc
Confidence             2223467888888888888888899999987654433333344567899999865544 444444 7788888765433


Q ss_pred             eeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCC
Q 008496          433 VHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLD  512 (563)
Q Consensus       433 ~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~d  512 (563)
                      ...+...-..-..++++|.+.        .+..+-+..+.|..+|+........+.........|++. .+..+.+-...
T Consensus       195 ~~~~~~~~~~PnGla~d~~~~--------~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav~-~~~ly~td~~~  265 (349)
T 3v64_C          195 RIIADTHLFWPNGLTIDYAGR--------RMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF-EDSLYWTDWHT  265 (349)
T ss_dssp             EESCCSSCSCEEEEEEETTTT--------EEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEE-TTEEEEEETTT
T ss_pred             EEEEECCCCCcceEEEeCCCC--------EEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEEE-CCEEEEecCCC
Confidence            222222233467899987643        245555667889999987433222232223345778873 45555555567


Q ss_pred             CcEEEEecCCCeeEEEE
Q 008496          513 KSMHIWSLKEGKIVKTY  529 (563)
Q Consensus       513 g~v~iw~~~~~~~~~~~  529 (563)
                      +.|..++..+|+.+..+
T Consensus       266 ~~V~~~~~~~G~~~~~i  282 (349)
T 3v64_C          266 KSINSANKFTGKNQEII  282 (349)
T ss_dssp             TEEEEEETTTCCSCEEE
T ss_pred             CeEEEEEccCCCccEEe
Confidence            88888886677654444

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.51  E-value=1.7e-05  Score=72.90  Aligned_cols=178  Identities=11%  Similarity=0.036  Sum_probs=125.2

Q ss_pred             EEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCe-EEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecC
Q 008496          318 IFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPT-LDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAG  396 (563)
Q Consensus       318 V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~  396 (563)
                      ..+|.|+. +....+.+.+|.|+++|+.+++....+ ...... ..+...++..+++.-.++.++++|..+.+.+.++.-
T Consensus        57 tqGL~~~~-~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~  134 (268)
T 3nok_A           57 TQGLVFHQ-GHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERTTRY  134 (268)
T ss_dssp             EEEEEEET-TEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEEEEC
T ss_pred             cceEEEEC-CEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEEEeC
Confidence            46788873 555667778889999999999998887 433221 235556677788877899999999999988888764


Q ss_pred             CCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeccc--C---CCEEEEEEccCCCCCCCCCCcEEEEEEeCCC
Q 008496          397 HQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREH--S---KEIYTIRWSPTGSGTNNPNQQLILASASFDS  471 (563)
Q Consensus       397 h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~--~---~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg  471 (563)
                      - ..-..++  ++++.|+.+..++.|.++|..+.+.+..+...  .   ..+..+.|. +|.         +.+....++
T Consensus       135 ~-~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~---------lyanvw~s~  201 (268)
T 3nok_A          135 S-GEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGV---------IYANIWHSS  201 (268)
T ss_dssp             S-SCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE---------EEEEETTCS
T ss_pred             C-CceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCE---------EEEEECCCC
Confidence            2 2223454  45776666666889999999998877766432  1   134556665 332         456666788


Q ss_pred             eEEEEeCCCCeEEEEecCC-------------CCCEEEEEEcCCCCEEEEEe
Q 008496          472 TVKLWDVELGKLLYSLNGH-------------REPVYSLAFSPTGEYLASGS  510 (563)
Q Consensus       472 ~i~iwd~~~~~~~~~~~~h-------------~~~i~~l~~spdg~~lasgs  510 (563)
                      .|.+.|..+++.+..+.-.             ..-.+.|||+|+++.|...+
T Consensus       202 ~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG  253 (268)
T 3nok_A          202 DVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG  253 (268)
T ss_dssp             EEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred             eEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence            9999999999998776421             12458899999875554444

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.50  E-value=2.7e-05  Score=71.48  Aligned_cols=179  Identities=12%  Similarity=0.139  Sum_probs=120.3

Q ss_pred             EEEecCCCceEEEEeCCC--eEEEEEcCCCcceeeecCCCcc-eeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeec
Q 008496          361 LDVDWRNNVSFATSSTDN--MIYVCKIGENRPIKTFAGHQGE-VNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLR  437 (563)
Q Consensus       361 ~~~~~~~~~~~~~~~~d~--~i~~~~~~~~~~~~~~~~h~~~-i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~  437 (563)
                      ..+.+.++..+.+.+.++  .|+++|..+++.+..+.-.... --.++.. .+++.+..-.++.+.+||..+.+.+.++.
T Consensus        46 qGL~~~~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~-g~~ly~ltw~~~~v~v~D~~t~~~~~ti~  124 (262)
T 3nol_A           46 EGFFYRNGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDW-KDKIVGLTWKNGLGFVWNIRNLRQVRSFN  124 (262)
T ss_dssp             EEEEEETTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEE-TTEEEEEESSSSEEEEEETTTCCEEEEEE
T ss_pred             ceEEEECCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEe-CCEEEEEEeeCCEEEEEECccCcEEEEEE
Confidence            344555566667777766  8999999998887766533222 1234443 23444445568899999999999888776


Q ss_pred             ccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCC--C---CCEEEEEEcCCCCEEEEEeCC
Q 008496          438 EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGH--R---EPVYSLAFSPTGEYLASGSLD  512 (563)
Q Consensus       438 ~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h--~---~~i~~l~~spdg~~lasgs~d  512 (563)
                      ... .-..++  +++.        .+++| ..++.|.++|..+.+.+.++.-.  .   ..++.+.|. +|+..|..-.+
T Consensus       125 ~~~-eG~glt--~dg~--------~L~~S-dGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~  191 (262)
T 3nol_A          125 YDG-EGWGLT--HNDQ--------YLIMS-DGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQT  191 (262)
T ss_dssp             CSS-CCCCEE--ECSS--------CEEEC-CSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTS
T ss_pred             CCC-CceEEe--cCCC--------EEEEE-CCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccC
Confidence            432 112333  3332        23333 44788999999998887775431  1   234567786 78766666578


Q ss_pred             CcEEEEecCCCeeEEEEecC-------------CCEEEEEEcCCCCEEEEEECC
Q 008496          513 KSMHIWSLKEGKIVKTYTGN-------------GGIFEVCWNKEGDKIAACFAN  553 (563)
Q Consensus       513 g~v~iw~~~~~~~~~~~~~~-------------~~i~~l~w~~~g~~la~~~~~  553 (563)
                      +.|.+.|.++|+++..+...             ...+.+||+|+++.|.+.+..
T Consensus       192 ~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~  245 (262)
T 3nol_A          192 NKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL  245 (262)
T ss_dssp             SEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred             CeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence            89999999999999888642             245889999999888776543

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.50  E-value=5.9e-05  Score=69.26  Aligned_cols=178  Identities=8%  Similarity=0.011  Sum_probs=123.0

Q ss_pred             EEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccC
Q 008496          361 LDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHS  440 (563)
Q Consensus       361 ~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~  440 (563)
                      ..+.+.++..+.+.+.++.|+++|+.+++.+..+....-.--.+++.. +++.+..-.++.+.+||..+.+.+.++....
T Consensus        58 qGL~~~~~~Ly~stG~~g~v~~iD~~Tgkv~~~~l~~~~FgeGit~~g-~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~  136 (268)
T 3nok_A           58 QGLVFHQGHFFESTGHQGTLRQLSLESAQPVWMERLGNIFAEGLASDG-ERLYQLTWTEGLLFTWSGMPPQRERTTRYSG  136 (268)
T ss_dssp             EEEEEETTEEEEEETTTTEEEECCSSCSSCSEEEECTTCCEEEEEECS-SCEEEEESSSCEEEEEETTTTEEEEEEECSS
T ss_pred             ceEEEECCEEEEEcCCCCEEEEEECCCCcEEeEECCCCcceeEEEEeC-CEEEEEEccCCEEEEEECCcCcEEEEEeCCC
Confidence            445566677788889999999999998887776521111123455543 3555556678999999999999888776422


Q ss_pred             CCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecC--CCC---CEEEEEEcCCCCEEEEEeCCCcE
Q 008496          441 KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNG--HRE---PVYSLAFSPTGEYLASGSLDKSM  515 (563)
Q Consensus       441 ~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~--h~~---~i~~l~~spdg~~lasgs~dg~v  515 (563)
                       .-..+++  ++.        .+++ +..++.|.++|..+.+.+.++.-  +..   .++.+.|. +|+..|..-.+..|
T Consensus       137 -eGwGLt~--Dg~--------~L~v-SdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I  203 (268)
T 3nok_A          137 -EGWGLCY--WNG--------KLVR-SDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDV  203 (268)
T ss_dssp             -CCCCEEE--ETT--------EEEE-ECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEE
T ss_pred             -ceeEEec--CCC--------EEEE-ECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeE
Confidence             2233432  332        2334 44588999999999988777643  222   34667777 78766666568899


Q ss_pred             EEEecCCCeeEEEEecC--------------CCEEEEEEcCCCCEEEEEEC
Q 008496          516 HIWSLKEGKIVKTYTGN--------------GGIFEVCWNKEGDKIAACFA  552 (563)
Q Consensus       516 ~iw~~~~~~~~~~~~~~--------------~~i~~l~w~~~g~~la~~~~  552 (563)
                      .+-|.++|+++..+...              ...+.+||+|+++.|.+...
T Consensus       204 ~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK  254 (268)
T 3nok_A          204 LEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK  254 (268)
T ss_dssp             EEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred             EEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence            99999999999888532              24689999999887766543

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.49  E-value=4.6e-06  Score=85.56  Aligned_cols=182  Identities=9%  Similarity=0.070  Sum_probs=122.9

Q ss_pred             eEEEEeCCCeEEEEEcCCCcceeeecC-CCcceeEEEE-C-CCCCEEEEEe------------------CCCcEEEEeCC
Q 008496          370 SFATSSTDNMIYVCKIGENRPIKTFAG-HQGEVNCVKW-D-PTGSLLASCS------------------DDVTAKIWNMK  428 (563)
Q Consensus       370 ~~~~~~~d~~i~~~~~~~~~~~~~~~~-h~~~i~~~~~-~-~~~~~las~s------------------~dg~i~iwd~~  428 (563)
                      .|+....++.|.+.|+...+..+.+.- ....+..+++ + |+++++++++                  .++.+.+.|..
T Consensus       104 lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~  183 (595)
T 1fwx_A          104 LFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDAD  183 (595)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETT
T ss_pred             EEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECC
Confidence            466667778899999988876663321 1234678887 5 9999988874                  24578899999


Q ss_pred             CCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCC--------------------------------------
Q 008496          429 QDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFD--------------------------------------  470 (563)
Q Consensus       429 ~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~d--------------------------------------  470 (563)
                      +.+.+.++..-. .-..++.+|+|.         ++++.+.+                                      
T Consensus       184 t~~v~~qI~Vgg-~pd~~~~spdGk---------~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i  253 (595)
T 1fwx_A          184 KWEVAWQVLVSG-NLDNCDADYEGK---------WAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQEL  253 (595)
T ss_dssp             TTEEEEEEEESS-CCCCEEECSSSS---------EEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEE
T ss_pred             CCeEEEEEEeCC-CccceEECCCCC---------EEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEE
Confidence            887776654322 223455666654         22222222                                      


Q ss_pred             CeEEEEeCCC--CeE-EEEecCCCCCEEEEEEcCCCCEEEEEe-CCCcEEEEecCCCe------------eEEEEecCCC
Q 008496          471 STVKLWDVEL--GKL-LYSLNGHREPVYSLAFSPTGEYLASGS-LDKSMHIWSLKEGK------------IVKTYTGNGG  534 (563)
Q Consensus       471 g~i~iwd~~~--~~~-~~~~~~h~~~i~~l~~spdg~~lasgs-~dg~v~iw~~~~~~------------~~~~~~~~~~  534 (563)
                      +.|.+.|.++  ++. +..+..- ....++.+||||+++++++ .+.+|.++|+.+.+            ++.......+
T Consensus       254 ~~V~VID~~~~~~~~~~~~Ipvg-~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~g  332 (595)
T 1fwx_A          254 NGVKVVDGRKEASSLFTRYIPIA-NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLG  332 (595)
T ss_dssp             TTEEEEECSGGGCCSSEEEEEEE-SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSC
T ss_pred             CcEEEEeCcccCCceeEEEEecC-CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCC
Confidence            2477777776  444 3333221 2346799999999876655 67899999998653            4555555667


Q ss_pred             EEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496          535 IFEVCWNKEGDKIAACFANHTVCVLDFR  562 (563)
Q Consensus       535 i~~l~w~~~g~~la~~~~~~~v~v~~~~  562 (563)
                      ...++|+++|....+.+.+++|.+||+.
T Consensus       333 P~h~aF~~dG~aY~t~~ldsqV~kwdi~  360 (595)
T 1fwx_A          333 PLHTAFDGRGNAYTSLFLDSQVVKWNIE  360 (595)
T ss_dssp             EEEEEECTTSEEEEEETTTTEEEEEEHH
T ss_pred             cceEEECCCCeEEEEEecCCcEEEEEhh
Confidence            8999999999544567889999999963

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.49  E-value=4.8e-05  Score=69.21  Aligned_cols=180  Identities=14%  Similarity=0.118  Sum_probs=123.1

Q ss_pred             CEEEEEeCCCCCEEEEeeCC--CcEEEEECCCCceeEEeeecccCe-EEEecCCCceEEEEeCCCeEEEEEcCCCcceee
Q 008496          317 PIFSLKWNKKGDYLLTGSCD--KTAIVWDVKTEEWKQQFEFHSGPT-LDVDWRNNVSFATSSTDNMIYVCKIGENRPIKT  393 (563)
Q Consensus       317 ~V~~l~~~~~~~~l~s~s~D--~~v~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~  393 (563)
                      -..+|.|++ +....+.+.+  .+|+.+|+.+++............ ..+...++..+.+.-.++.++++|..+.+.+.+
T Consensus        22 ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~~~t  100 (243)
T 3mbr_X           22 FTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFVYDLATLTPRAR  100 (243)
T ss_dssp             CEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTTEEEEE
T ss_pred             ccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEEEECCcCcEEEE
Confidence            356889986 4555565554  489999999999988876544321 234444667777777889999999999888888


Q ss_pred             ecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccC-----CCEEEEEEccCCCCCCCCCCcEEEEEEe
Q 008496          394 FAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHS-----KEIYTIRWSPTGSGTNNPNQQLILASAS  468 (563)
Q Consensus       394 ~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~-----~~i~~~~~~p~~~~~~~~~~~~~l~s~s  468 (563)
                      +... +.-..+++  +++.|+.+..++.|.++|..+.+.+..+....     ..+..+.|. +|         .+.+..-
T Consensus       101 i~~~-~~Gwglt~--dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G---------~lyanvw  167 (243)
T 3mbr_X          101 FRYP-GEGWALTS--DDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NG---------ELLANVW  167 (243)
T ss_dssp             EECS-SCCCEEEE--CSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TT---------EEEEEET
T ss_pred             EeCC-CCceEEee--CCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CC---------EEEEEEC
Confidence            7642 23345554  45544444458899999999988776665321     234455654 33         2455555


Q ss_pred             CCCeEEEEeCCCCeEEEEecCC-------------CCCEEEEEEcCCCCEEEEEe
Q 008496          469 FDSTVKLWDVELGKLLYSLNGH-------------REPVYSLAFSPTGEYLASGS  510 (563)
Q Consensus       469 ~dg~i~iwd~~~~~~~~~~~~h-------------~~~i~~l~~spdg~~lasgs  510 (563)
                      .+..|.+.|..+|+.+..+.-.             ..-.+.|+|+|++..|...+
T Consensus       168 ~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG  222 (243)
T 3mbr_X          168 LTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG  222 (243)
T ss_dssp             TTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred             CCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence            6889999999999998876411             12458899999876665555

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.46  E-value=8.3e-05  Score=78.13  Aligned_cols=229  Identities=13%  Similarity=0.096  Sum_probs=138.1

Q ss_pred             CCEEEEeeCCCcEEEEECCCCceeEEeeecc---------cCeEEEecCCCc-eEEEEe------CCCeEEEEEcCCCcc
Q 008496          327 GDYLLTGSCDKTAIVWDVKTEEWKQQFEFHS---------GPTLDVDWRNNV-SFATSS------TDNMIYVCKIGENRP  390 (563)
Q Consensus       327 ~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~---------~~~~~~~~~~~~-~~~~~~------~d~~i~~~~~~~~~~  390 (563)
                      +..++.++.|+.|..+|..+++.+-.+....         .+++.-.-.+.. .++.++      .++.|+.+|..+++.
T Consensus       117 ~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~  196 (582)
T 1flg_A          117 GDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEE  196 (582)
T ss_dssp             TTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCE
T ss_pred             CCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCE
Confidence            5678888899999999999998776554322         122211100111 333333      267888888877665


Q ss_pred             eeeecCCC-----------------------------------------cceeEEEECCCCCEEEEEeC-----------
Q 008496          391 IKTFAGHQ-----------------------------------------GEVNCVKWDPTGSLLASCSD-----------  418 (563)
Q Consensus       391 ~~~~~~h~-----------------------------------------~~i~~~~~~~~~~~las~s~-----------  418 (563)
                      +-......                                         ..-..++++|...++..++.           
T Consensus       197 ~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~  276 (582)
T 1flg_A          197 IWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWART  276 (582)
T ss_dssp             EEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGS
T ss_pred             EeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccc
Confidence            43332110                                         00023566777777766653           


Q ss_pred             ---------C----CcEEEEeCCCCceeeeecc--cC--------CCEEEEEEc-cCCCCCCCCCCcEEEEEEeCCCeEE
Q 008496          419 ---------D----VTAKIWNMKQDKYVHDLRE--HS--------KEIYTIRWS-PTGSGTNNPNQQLILASASFDSTVK  474 (563)
Q Consensus       419 ---------d----g~i~iwd~~~~~~~~~~~~--~~--------~~i~~~~~~-p~~~~~~~~~~~~~l~s~s~dg~i~  474 (563)
                               |    +.|..+|.++++.+-.++.  |.        .++.. ... .+|.      ...+++.++.+|.++
T Consensus       277 ~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~-~~~~~~G~------~~~~v~~~~~~G~l~  349 (582)
T 1flg_A          277 AKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLF-DYKAKDGK------IVKATAHADRNGFFY  349 (582)
T ss_dssp             CTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEE-EEECSSSC------EEEEEEEECTTSEEE
T ss_pred             cCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEE-eeecCCCC------EEEEEEEECCCceEE
Confidence                     2    5799999999988766542  21        11111 110 1221      013677899999999


Q ss_pred             EEeCCCCeEEEEecCCC-------------CCE--------------------------------EEEEEcCCCCEEEEE
Q 008496          475 LWDVELGKLLYSLNGHR-------------EPV--------------------------------YSLAFSPTGEYLASG  509 (563)
Q Consensus       475 iwd~~~~~~~~~~~~h~-------------~~i--------------------------------~~l~~spdg~~lasg  509 (563)
                      ++|..+|+.+.......             .++                                ..++|+|+...+.+.
T Consensus       350 ~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~  429 (582)
T 1flg_A          350 VVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVP  429 (582)
T ss_dssp             EEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEE
T ss_pred             EEECCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEe
Confidence            99999999987654321             001                                135677765554432


Q ss_pred             e---------------------------------CCCcEEEEecCCCeeEEEEecCCCEEEEEEcCCCCEEEEEECCCeE
Q 008496          510 S---------------------------------LDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTV  556 (563)
Q Consensus       510 s---------------------------------~dg~v~iw~~~~~~~~~~~~~~~~i~~l~w~~~g~~la~~~~~~~v  556 (563)
                      .                                 .+|.|..||+.+|+.+........+..-.....|..+.++..|+.+
T Consensus       430 ~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~g~~dg~l  509 (582)
T 1flg_A          430 ANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYF  509 (582)
T ss_dssp             EECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEE
T ss_pred             chhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCCCCcccceEeCCCEEEEECCCCcE
Confidence            2                                 3688999999999998877654332221222346778888889999


Q ss_pred             EEEEee
Q 008496          557 CVLDFR  562 (563)
Q Consensus       557 ~v~~~~  562 (563)
                      ..||.+
T Consensus       510 ~A~D~~  515 (582)
T 1flg_A          510 KAFDAK  515 (582)
T ss_dssp             EEEETT
T ss_pred             EEEECC
Confidence            888864

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.43  E-value=0.00025  Score=70.50  Aligned_cols=241  Identities=9%  Similarity=-0.004  Sum_probs=147.7

Q ss_pred             EEEECCCCCEEEEEeCCCeEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEEEe-eCCCcEEEEECCCCceeEEeee--
Q 008496          279 TLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTG-SCDKTAIVWDVKTEEWKQQFEF--  355 (563)
Q Consensus       279 ~l~~s~~g~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~-s~D~~v~iwd~~~~~~~~~~~~--  355 (563)
                      |.+..+.+ +|+.+. ...|+..+..+.....+......+.+++|++.+..|+.. ...+.|..+++........+..  
T Consensus        81 C~~~~~~~-~l~~~~-~~~I~~i~~~~~~~~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~  158 (386)
T 3v65_B           81 CKALGPEP-VLLFAN-RIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGL  158 (386)
T ss_dssp             EEECSSCC-EEEEEC-BSCEEEECTTSCCCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSC
T ss_pred             ECCccccc-eeEeec-CccceeeccCCCcEEEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCC
Confidence            44444433 333333 356788887765444443344557899999876666544 4567899999876654333221  


Q ss_pred             cccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEE-eCC-CcEEEEeCCCCcee
Q 008496          356 HSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASC-SDD-VTAKIWNMKQDKYV  433 (563)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~-s~d-g~i~iwd~~~~~~~  433 (563)
                      ....-+.++|.....+++-...+.|.+.++........+...-...+.++++|.+..|... ... +.|..+++......
T Consensus       159 ~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~  238 (386)
T 3v65_B          159 ESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRR  238 (386)
T ss_dssp             SCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE
T ss_pred             CCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcE
Confidence            1223467788888888887788888888876544333333334567899999876655444 344 67888887654332


Q ss_pred             eeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCC
Q 008496          434 HDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDK  513 (563)
Q Consensus       434 ~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg  513 (563)
                      ......-.....|+++|.+.        .+..+-+..+.|..+|+........+.........|++ ..+..+.+-...+
T Consensus       239 ~~~~~~~~~PnGlavd~~~~--------~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~  309 (386)
T 3v65_B          239 IIADTHLFWPNGLTIDYAGR--------RMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTK  309 (386)
T ss_dssp             EEECSSCSCEEEEEEEGGGT--------EEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTT
T ss_pred             EEEECCCCCeeeEEEeCCCC--------EEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEE-ECCEEEEeeCCCC
Confidence            22222233467899987643        34555666788999998643322223222334577888 3445556666678


Q ss_pred             cEEEEecCCCeeEEEEe
Q 008496          514 SMHIWSLKEGKIVKTYT  530 (563)
Q Consensus       514 ~v~iw~~~~~~~~~~~~  530 (563)
                      .|..++..+|+.+..+.
T Consensus       310 ~V~~~~~~~G~~~~~i~  326 (386)
T 3v65_B          310 SINSANKFTGKNQEIIR  326 (386)
T ss_dssp             EEEEEETTTCCSCEEEE
T ss_pred             eEEEEECCCCcceEEEc
Confidence            89999877776655553

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.42  E-value=0.0016  Score=62.74  Aligned_cols=225  Identities=11%  Similarity=0.056  Sum_probs=135.4

Q ss_pred             CeEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEEEe-eCCCcEEEEECCC----CceeEEeee--cccCeEEEecCCC
Q 008496          296 GQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTG-SCDKTAIVWDVKT----EEWKQQFEF--HSGPTLDVDWRNN  368 (563)
Q Consensus       296 g~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~-s~D~~v~iwd~~~----~~~~~~~~~--~~~~~~~~~~~~~  368 (563)
                      ..|+..++.+.....+......+.++.|++.+..|+.+ ...+.|..+++.+    ......+..  ....-+.++|...
T Consensus        10 ~~I~~i~~~~~~~~~~~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~   89 (316)
T 1ijq_A           10 HEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHS   89 (316)
T ss_dssp             SSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTT
T ss_pred             CeEEEEECCCcceEehhcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCC
Confidence            45777887765333333334567899999876665544 4568899999876    222222211  2223566778777


Q ss_pred             ceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeC-C-CcEEEEeCCCCceeeeecccCCCEEEE
Q 008496          369 VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD-D-VTAKIWNMKQDKYVHDLREHSKEIYTI  446 (563)
Q Consensus       369 ~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~-d-g~i~iwd~~~~~~~~~~~~~~~~i~~~  446 (563)
                      ..+++-...+.|.+++.........+...-.....++++|.+..|..+.. . +.|...++............-.....+
T Consensus        90 ~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~~~~~~~P~gl  169 (316)
T 1ijq_A           90 NIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGI  169 (316)
T ss_dssp             EEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEE
T ss_pred             eEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEEECCCCCceEE
Confidence            77888788889999988654433333333356789999986665544433 3 678877776433221112223456788


Q ss_pred             EEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCe--EEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCe
Q 008496          447 RWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK--LLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGK  524 (563)
Q Consensus       447 ~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~--~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~  524 (563)
                      +++|++.        .+..+-+..+.|..+|+....  .+............|++. .+..+.+-...+.|..++..+|+
T Consensus       170 a~d~~~~--------~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~  240 (316)
T 1ijq_A          170 TLDLLSG--------RLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGS  240 (316)
T ss_dssp             EEETTTT--------EEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCC
T ss_pred             EEeccCC--------EEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCc
Confidence            9987653        345555667899999987322  222221122335678875 35555666667899999987776


Q ss_pred             eEEEE
Q 008496          525 IVKTY  529 (563)
Q Consensus       525 ~~~~~  529 (563)
                      .+..+
T Consensus       241 ~~~~i  245 (316)
T 1ijq_A          241 DVNLL  245 (316)
T ss_dssp             CCEEE
T ss_pred             ceEEE
Confidence            55444

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.41  E-value=4e-05  Score=83.45  Aligned_cols=193  Identities=13%  Similarity=0.118  Sum_probs=112.4

Q ss_pred             CCCC-ceEEEEEC-CCCCEEEEeeC-C----CcEEEEecCCC-CCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECC
Q 008496          213 GHTS-EVCACAWS-PAGSLLASGSG-D----STARIWTIADG-TSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG  284 (563)
Q Consensus       213 ~h~~-~V~~~~~s-p~~~~latgs~-D----~~i~iW~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~  284 (563)
                      +|.. .+...+|| |||++||.+.. +    ..|+++++.++ ....    ..     +.          .....++|+|
T Consensus       170 ~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~----~~-----~~----------~~~~~~~Wsp  230 (751)
T 2xe4_A          170 GKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIA----DK-----VS----------GTNGEIVWGP  230 (751)
T ss_dssp             TCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCC----CC-----EE----------EECSCCEECS
T ss_pred             CCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCC----cc-----cc----------CceeeEEEec
Confidence            4443 67889999 99998886542 2    35999999876 4210    00     00          0123578999


Q ss_pred             CCCEEEEEeCC-----CeEEEEEcCCce---eEeec-cCCCCEEEEEeCCCCCEEEEeeC---CCcEEEEECCCC--ce-
Q 008496          285 EGTLLATGSYD-----GQARIWSTNGDL---KCTLS-KHKGPIFSLKWNKKGDYLLTGSC---DKTAIVWDVKTE--EW-  349 (563)
Q Consensus       285 ~g~~l~sg~~d-----g~i~vw~~~~~~---~~~~~-~h~~~V~~l~~~~~~~~l~s~s~---D~~v~iwd~~~~--~~-  349 (563)
                      ||+.|+....+     ..|.++++.+..   ...+. ....-..++.|+|+|++|+..+.   ...|.++|+.++  .. 
T Consensus       231 Dg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~  310 (751)
T 2xe4_A          231 DHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNT  310 (751)
T ss_dssp             STTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCC
T ss_pred             CCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCce
Confidence            99988877765     257777776532   12222 22344678899999999876553   335788898765  23 


Q ss_pred             -eEEeeecccCeEEEecCCCceEEEE-eCC----CeEEEEEcCCCcceee-ecCCCc--ceeEEEECCCCCEEEEEeCCC
Q 008496          350 -KQQFEFHSGPTLDVDWRNNVSFATS-STD----NMIYVCKIGENRPIKT-FAGHQG--EVNCVKWDPTGSLLASCSDDV  420 (563)
Q Consensus       350 -~~~~~~~~~~~~~~~~~~~~~~~~~-~~d----~~i~~~~~~~~~~~~~-~~~h~~--~i~~~~~~~~~~~las~s~dg  420 (563)
                       .........+...++|..+..|+.. ..+    ..|+.+++........ +..|..  .+..+.+. .+.++++...++
T Consensus       311 ~~~l~~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g  389 (751)
T 2xe4_A          311 LEIVRPREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAG  389 (751)
T ss_dssp             EEESSCCCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETT
T ss_pred             eEEeecCCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCC
Confidence             2222233445566665445444433 322    3677777754222222 223333  45566665 345667777788


Q ss_pred             cEEEE
Q 008496          421 TAKIW  425 (563)
Q Consensus       421 ~i~iw  425 (563)
                      ..+||
T Consensus       390 ~~~l~  394 (751)
T 2xe4_A          390 LTRIW  394 (751)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            65554

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.41  E-value=0.00011  Score=66.81  Aligned_cols=178  Identities=11%  Similarity=0.057  Sum_probs=121.6

Q ss_pred             EEEecCCCceEEEEeCC--CeEEEEEcCCCcceeeecCCCcc-eeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeec
Q 008496          361 LDVDWRNNVSFATSSTD--NMIYVCKIGENRPIKTFAGHQGE-VNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLR  437 (563)
Q Consensus       361 ~~~~~~~~~~~~~~~~d--~~i~~~~~~~~~~~~~~~~h~~~-i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~  437 (563)
                      ..+.+.++..+.+.+.+  ..|+++|..+++.+....-.... --.++.. .+++.+..-.++.+.+||..+.+.+.++.
T Consensus        24 qGL~~~~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~-~~~ly~ltw~~~~v~v~D~~tl~~~~ti~  102 (243)
T 3mbr_X           24 EGLFYLRGHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW-RDRLIQLTWRNHEGFVYDLATLTPRARFR  102 (243)
T ss_dssp             EEEEEETTEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE-TTEEEEEESSSSEEEEEETTTTEEEEEEE
T ss_pred             ccEEEECCEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe-CCEEEEEEeeCCEEEEEECCcCcEEEEEe
Confidence            35566666667777765  48999999998887766533221 1234443 24455555668999999999999888876


Q ss_pred             ccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecC--CC---CCEEEEEEcCCCCEEEEEeCC
Q 008496          438 EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNG--HR---EPVYSLAFSPTGEYLASGSLD  512 (563)
Q Consensus       438 ~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~--h~---~~i~~l~~spdg~~lasgs~d  512 (563)
                      ... .-..+++  ++.        .+++| ..++.|.++|..+.+.+.++.-  +.   ..++.+.|. +|+.+|..-.+
T Consensus       103 ~~~-~Gwglt~--dg~--------~L~vS-dgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s  169 (243)
T 3mbr_X          103 YPG-EGWALTS--DDS--------HLYMS-DGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLT  169 (243)
T ss_dssp             CSS-CCCEEEE--CSS--------CEEEE-CSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTT
T ss_pred             CCC-CceEEee--CCC--------EEEEE-CCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECCC
Confidence            432 2234443  332        23444 4588999999999888776643  21   235666765 77766666567


Q ss_pred             CcEEEEecCCCeeEEEEecC--------------CCEEEEEEcCCCCEEEEEEC
Q 008496          513 KSMHIWSLKEGKIVKTYTGN--------------GGIFEVCWNKEGDKIAACFA  552 (563)
Q Consensus       513 g~v~iw~~~~~~~~~~~~~~--------------~~i~~l~w~~~g~~la~~~~  552 (563)
                      ..|.+.|.++|+++..+...              ...+.+||+|+++.|.+.+.
T Consensus       170 ~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK  223 (243)
T 3mbr_X          170 SRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK  223 (243)
T ss_dssp             TEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred             CeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence            89999999999999888621              24679999999988777644

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.36  E-value=0.0005  Score=65.90  Aligned_cols=224  Identities=10%  Similarity=-0.018  Sum_probs=129.5

Q ss_pred             CCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecCCCc-eEEEEeCC-C-eEEEEEcCCCccee
Q 008496          316 GPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNV-SFATSSTD-N-MIYVCKIGENRPIK  392 (563)
Q Consensus       316 ~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d-~-~i~~~~~~~~~~~~  392 (563)
                      ....+++|+++|+.+++-..++.|..||.... ....+.. ...+..+.+..+. .+++.... + .|+.++...++...
T Consensus        32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~~-~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~  109 (306)
T 2p4o_A           32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHATV-EGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVET  109 (306)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEEC-SSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred             CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEeC-CCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEE
Confidence            34578999999986666667889999997653 3333322 2334555554433 33333322 2 46666655444322


Q ss_pred             eec-CCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCce-eeeec---------ccCCCEEEEEEccCCCCCCCCCCc
Q 008496          393 TFA-GHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKY-VHDLR---------EHSKEIYTIRWSPTGSGTNNPNQQ  461 (563)
Q Consensus       393 ~~~-~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~-~~~~~---------~~~~~i~~~~~~p~~~~~~~~~~~  461 (563)
                      ... ........++..+.+..+++.+.++.|.++|..++.. +....         ..-.....+  +|++.        
T Consensus       110 ~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~--------  179 (306)
T 2p4o_A          110 LLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGN--------  179 (306)
T ss_dssp             EEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETT--------
T ss_pred             EEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCC--------
Confidence            111 1122334555556666666665688888888765421 11000         001122333  44442        


Q ss_pred             EEEEEEeCCCeEEEEeCCC-CeE--EEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEE--EecC-CCE
Q 008496          462 LILASASFDSTVKLWDVEL-GKL--LYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKT--YTGN-GGI  535 (563)
Q Consensus       462 ~~l~s~s~dg~i~iwd~~~-~~~--~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~--~~~~-~~i  535 (563)
                      .++++-+..+.|..+++.. ++.  ...+... .....++++++|+++++....+.|.+++.. |++...  .... ...
T Consensus       180 ~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~-~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p  257 (306)
T 2p4o_A          180 FLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQ-TNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGS  257 (306)
T ss_dssp             EEEEEETTTTEEEEEEBCTTSCBCCCEEEEES-CCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTE
T ss_pred             EEEEEeCCCCEEEEEEeCCCCCCCccEEEecc-CCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecccccCCc
Confidence            4566677788999999864 321  1111101 224568999999988877778899999975 665332  2222 458


Q ss_pred             EEEEEc---CCCCEEEEEECC
Q 008496          536 FEVCWN---KEGDKIAACFAN  553 (563)
Q Consensus       536 ~~l~w~---~~g~~la~~~~~  553 (563)
                      .+++|.   ++++.|.++...
T Consensus       258 ~~~a~~g~~~d~~~LyVt~~~  278 (306)
T 2p4o_A          258 TAVAFGQTEGDCTAIYVVTNG  278 (306)
T ss_dssp             EEEEECCSTTTTTEEEEEECT
T ss_pred             eEEEEecccCCCCEEEEECCC
Confidence            899999   898888777543

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.32  E-value=0.00049  Score=69.38  Aligned_cols=238  Identities=11%  Similarity=0.140  Sum_probs=140.6

Q ss_pred             CeEEEEECC-CCCEEEEEeCCCeEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEEEeeCC-C---cEEEEECCCCcee
Q 008496          276 DVTTLDWNG-EGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCD-K---TAIVWDVKTEEWK  350 (563)
Q Consensus       276 ~V~~l~~s~-~g~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D-~---~v~iwd~~~~~~~  350 (563)
                      ....|+|+| ++..|..+...+.|+.++..+.....+.........++|+++|++|+.+... +   ...+|-...+.+.
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~~  217 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGFK  217 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTSC
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCcee
Confidence            457889998 3555555555588999998876555554455567899999999976666542 1   1122211111110


Q ss_pred             EEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECC-CCCEEEEEeCCCcEEEEeCCC
Q 008496          351 QQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDP-TGSLLASCSDDVTAKIWNMKQ  429 (563)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~-~~~~las~s~dg~i~iwd~~~  429 (563)
                      ..                                    ..+..    ......++++| ++.++++-..++.|..++...
T Consensus       218 ~~------------------------------------~~l~~----~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~  257 (430)
T 3tc9_A          218 VI------------------------------------TELTK----GQNCNGAETHPINGELYFNSWNAGQVFRYDFTT  257 (430)
T ss_dssp             SE------------------------------------EEEEE----CSSCCCEEECTTTCCEEEEETTTTEEEEEETTT
T ss_pred             ee------------------------------------eeecc----CCCceEEEEeCCCCEEEEEECCCCEEEEEECCC
Confidence            00                                    00001    12345688899 777777776788899999876


Q ss_pred             Cceeeeecc-cCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC--CeE--EEEecCC--------------
Q 008496          430 DKYVHDLRE-HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL--GKL--LYSLNGH--------------  490 (563)
Q Consensus       430 ~~~~~~~~~-~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~--~~~--~~~~~~h--------------  490 (563)
                      ......... ....-..++|+|++.        .++++-...+.|..++...  +..  +..+.+.              
T Consensus       258 ~~~~~~~~~~~~~~P~gia~~pdG~--------~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a  329 (430)
T 3tc9_A          258 QETTPLFTIQDSGWEFHIQFHPSGN--------YAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKA  329 (430)
T ss_dssp             TEEEEEEECSSSSCCEEEEECTTSS--------EEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGC
T ss_pred             CcEEEEEEcCCCCcceeEEEcCCCC--------EEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcce
Confidence            654221111 123456889998874        3455666778899987652  222  1111111              


Q ss_pred             --CCCEEEEEEc--------CCCCEEEEEeCCCcEEEEecCCCeeEEEEec---------CC---------CEEEEEEcC
Q 008496          491 --REPVYSLAFS--------PTGEYLASGSLDKSMHIWSLKEGKIVKTYTG---------NG---------GIFEVCWNK  542 (563)
Q Consensus       491 --~~~i~~l~~s--------pdg~~lasgs~dg~v~iw~~~~~~~~~~~~~---------~~---------~i~~l~w~~  542 (563)
                        ..|--.++..        ++|.++++=...++|+.++ .+|.+......         .+         ....|++++
T Consensus       330 ~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~-~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~  408 (430)
T 3tc9_A          330 RMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILT-PQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDE  408 (430)
T ss_dssp             BBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEEC-TTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEET
T ss_pred             EeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEEC-CCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEEC
Confidence              1121145553        4466666666677899998 45654433311         11         367999999


Q ss_pred             C-CCEEEEEECCCeEEEEEee
Q 008496          543 E-GDKIAACFANHTVCVLDFR  562 (563)
Q Consensus       543 ~-g~~la~~~~~~~v~v~~~~  562 (563)
                      + |..+++-..+..|..++..
T Consensus       409 ~~g~lyVaD~~n~rIr~i~~e  429 (430)
T 3tc9_A          409 ERECFFIGDRENRRIRKIGYE  429 (430)
T ss_dssp             TTTEEEEEEGGGTEEEEEEEC
T ss_pred             CCCEEEEEECCCCeEEEEccC
Confidence            5 6666666778889888753

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.30  E-value=4.3e-05  Score=83.24  Aligned_cols=226  Identities=11%  Similarity=0.042  Sum_probs=118.0

Q ss_pred             CeEEEEEC-CCCCEEEEEeC-CC----eEEEEEcCCc-eeEeeccC-CCCEEEEEeCCCCCEEEEeeCCC-----cEEEE
Q 008496          276 DVTTLDWN-GEGTLLATGSY-DG----QARIWSTNGD-LKCTLSKH-KGPIFSLKWNKKGDYLLTGSCDK-----TAIVW  342 (563)
Q Consensus       276 ~V~~l~~s-~~g~~l~sg~~-dg----~i~vw~~~~~-~~~~~~~h-~~~V~~l~~~~~~~~l~s~s~D~-----~v~iw  342 (563)
                      .+...+|| |||++|+.+.. +|    .|+++++.+. ..  +..+ .....++.|+|+|+.|+....|.     .|.++
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~--l~~~~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~  252 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQT--IADKVSGTNGEIVWGPDHTSLFYVTKDETLRENKVWRH  252 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCC--CCCCEEEECSCCEECSSTTEEEEEEECTTCCEEEEEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEe--CCccccCceeeEEEecCCCEEEEEEECCCCCCCEEEEE
Confidence            57788999 99998886543 33    4999998765 31  1111 11124678999999888776552     23333


Q ss_pred             ECCCCceeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeec-CCCcceeEEEECCCCCEEEEEeC---
Q 008496          343 DVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFA-GHQGEVNCVKWDPTGSLLASCSD---  418 (563)
Q Consensus       343 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~-~h~~~i~~~~~~~~~~~las~s~---  418 (563)
                      ++.++..                                       .....+. .+......+.|+|||++|+..+.   
T Consensus       253 ~lgt~~~---------------------------------------~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~  293 (751)
T 2xe4_A          253 VMGKLQS---------------------------------------EDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPE  293 (751)
T ss_dssp             ETTSCGG---------------------------------------GCEEEEECCCTTCEEEEEECTTSSEEEEEEECSS
T ss_pred             ECCCCch---------------------------------------hcEEEEecCCCceEEEEEECCCCCEEEEEecCCC
Confidence            3322210                                       0111221 12223457899999998876553   


Q ss_pred             CCcEEEEeCCCCc-ee--eeec-ccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCC----CeEEEEeCCCCeEEEE-ecC
Q 008496          419 DVTAKIWNMKQDK-YV--HDLR-EHSKEIYTIRWSPTGSGTNNPNQQLILASASFD----STVKLWDVELGKLLYS-LNG  489 (563)
Q Consensus       419 dg~i~iwd~~~~~-~~--~~~~-~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~d----g~i~iwd~~~~~~~~~-~~~  489 (563)
                      ...|.++|+.++. ..  ..+. ......+++.|...+         .+++....+    ..|..+|+.++..... +..
T Consensus       294 ~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~---------~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~  364 (751)
T 2xe4_A          294 TAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGTS---------HLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVD  364 (751)
T ss_dssp             CEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEETTT---------EEEEEECTTTCTTCEEEEEETTSTTCCCCEEEC
T ss_pred             CceEEEEECCCCCCCceeEEeecCCCCceEEEeeeeCC---------EEEEEeCCCCCCCcEEEEEcCCCcccceeeEEC
Confidence            3467788887652 11  2232 233445555543322         234444433    3566677764211112 222


Q ss_pred             CCC--CEEEEEEcCCCCEEEEEeCCCc--EEEEec-------CCCeeEEEE--ecCCCEEEEEE----cCCCCEEEEEEC
Q 008496          490 HRE--PVYSLAFSPTGEYLASGSLDKS--MHIWSL-------KEGKIVKTY--TGNGGIFEVCW----NKEGDKIAACFA  552 (563)
Q Consensus       490 h~~--~i~~l~~spdg~~lasgs~dg~--v~iw~~-------~~~~~~~~~--~~~~~i~~l~w----~~~g~~la~~~~  552 (563)
                      +..  .+..+++. .+.++++...++.  |.++++       .+++.+..+  .....+..+.|    +++++.|+..+.
T Consensus       365 ~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~dl~~~~~~~~~g~~~~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~s  443 (751)
T 2xe4_A          365 HSEDVFMESIAVR-SNYLVVAGRRAGLTRIWTMMADSQDGVFKAGTGLREVVMEEPIFTVHLVESQMLEYEEPTFRMEYS  443 (751)
T ss_dssp             CCSSEEEEEEEEC-SSEEEEEEEETTEEEEEEEECCTTTSCCCTTTCCEECCCCCSSCEEEECGGGCCCTTCSCEEEEEE
T ss_pred             CCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEEEecccccccccCCccceEECCCCceeEEEeccCcccCCCCCEEEEEEe
Confidence            333  34455554 2344556667775  555564       344412333  22333456655    457776655443

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.26  E-value=0.0025  Score=63.54  Aligned_cols=233  Identities=12%  Similarity=0.067  Sum_probs=142.4

Q ss_pred             EEEEEeCCCeEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEEEee-CCCcEEEEECCCC----ceeEEee--ecccCe
Q 008496          288 LLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGS-CDKTAIVWDVKTE----EWKQQFE--FHSGPT  360 (563)
Q Consensus       288 ~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s-~D~~v~iwd~~~~----~~~~~~~--~~~~~~  360 (563)
                      +|+.+. ...|+..++++.....+......+.+|+|++.+..|+-.. ..+.|..+++...    .....+.  .....-
T Consensus        85 ~ll~~~-~~~I~~i~l~~~~~~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~g  163 (400)
T 3p5b_L           85 YLFFTN-RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDG  163 (400)
T ss_dssp             EEEEEE-TTEEEEECTTSCSCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEE
T ss_pred             eeEEec-cceeEEEccCCcceeEeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCccc
Confidence            344433 4678888887765444444556788999998776666554 5678888888652    1222222  111234


Q ss_pred             EEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEe-C-CCcEEEEeCCCCceeeeecc
Q 008496          361 LDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCS-D-DVTAKIWNMKQDKYVHDLRE  438 (563)
Q Consensus       361 ~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s-~-dg~i~iwd~~~~~~~~~~~~  438 (563)
                      +.++|.....+++-...+.|.+.++........+...-.....|+++|.+..|.... . .+.|...++........+..
T Consensus       164 lavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~  243 (400)
T 3p5b_L          164 LAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTE  243 (400)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECS
T ss_pred             EEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEEC
Confidence            678888888888888888999988876554444443444578999999666554443 2 46788888765443322222


Q ss_pred             cCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEec--CCCCCEEEEEEcCCCCEEEEEeCCCcEE
Q 008496          439 HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLN--GHREPVYSLAFSPTGEYLASGSLDKSMH  516 (563)
Q Consensus       439 ~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--~h~~~i~~l~~spdg~~lasgs~dg~v~  516 (563)
                      .-.....|+++|.+.        .+..+-+..+.|..+|+........+.  +.......|++. .+..+.+-...+.|.
T Consensus       244 ~l~~P~glavd~~~~--------~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~  314 (400)
T 3p5b_L          244 NIQWPNGITLDLLSG--------RLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIF  314 (400)
T ss_dssp             SCSCEEEEEEETTTT--------EEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEE
T ss_pred             CCCceEEEEEEeCCC--------EEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEE
Confidence            234567888887653        244455567889999986433222222  122334677773 334555556678899


Q ss_pred             EEecCCCeeEEEEe
Q 008496          517 IWSLKEGKIVKTYT  530 (563)
Q Consensus       517 iw~~~~~~~~~~~~  530 (563)
                      .++..+|+.+..+.
T Consensus       315 ~~~~~~G~~~~~i~  328 (400)
T 3p5b_L          315 SANRLTGSDVNLLA  328 (400)
T ss_dssp             EEESSSCCCCEEEE
T ss_pred             EEEcCCCCceEEEe
Confidence            99987776555543

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.25  E-value=0.0017  Score=62.41  Aligned_cols=226  Identities=9%  Similarity=0.016  Sum_probs=136.6

Q ss_pred             CCeEEEEEcCCce--eEeeccCCCCEEEEEeCCCCCEEE-EeeCCCcEEEEECCCCceeE-Eee--ecccCeEEEecCCC
Q 008496          295 DGQARIWSTNGDL--KCTLSKHKGPIFSLKWNKKGDYLL-TGSCDKTAIVWDVKTEEWKQ-QFE--FHSGPTLDVDWRNN  368 (563)
Q Consensus       295 dg~i~vw~~~~~~--~~~~~~h~~~V~~l~~~~~~~~l~-s~s~D~~v~iwd~~~~~~~~-~~~--~~~~~~~~~~~~~~  368 (563)
                      ...|+..++++..  ...+......+.++.|++.+..|+ +-...+.|..+++....... .+.  .....-+.++|...
T Consensus        12 ~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g   91 (318)
T 3sov_A           12 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGE   91 (318)
T ss_dssp             EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTT
T ss_pred             cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCC
Confidence            4578888877642  112222223467899998665555 44556789999987653211 111  12233477888888


Q ss_pred             ceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEe--CCCcEEEEeCCCCceeeeecccCCCEEEE
Q 008496          369 VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCS--DDVTAKIWNMKQDKYVHDLREHSKEIYTI  446 (563)
Q Consensus       369 ~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s--~dg~i~iwd~~~~~~~~~~~~~~~~i~~~  446 (563)
                      ..+++-...+.|.+++.........+.......+.++++|.+..|..+.  ..+.|...++........+...-..-..+
T Consensus        92 ~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pngl  171 (318)
T 3sov_A           92 KLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGL  171 (318)
T ss_dssp             EEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEE
T ss_pred             eEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEE
Confidence            8888888888999999876543333333445678999998765555444  35678777776433222122222345788


Q ss_pred             EEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeE
Q 008496          447 RWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIV  526 (563)
Q Consensus       447 ~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~  526 (563)
                      +++|++.        .+..+-+..+.|..+|+........+.+.......+++.. +..+.+-...+.|..++..+|+..
T Consensus       172 avd~~~~--------~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~-~~lywtd~~~~~V~~~~~~~G~~~  242 (318)
T 3sov_A          172 TLDYEEQ--------KLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFE-DILYWTDWSTHSILACNKYTGEGL  242 (318)
T ss_dssp             EEETTTT--------EEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSC
T ss_pred             EEeccCC--------EEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeC-CEEEEEecCCCeEEEEECCCCCce
Confidence            9988543        2445556678899999863322222222333456777753 344555556788999998777654


Q ss_pred             EEE
Q 008496          527 KTY  529 (563)
Q Consensus       527 ~~~  529 (563)
                      ..+
T Consensus       243 ~~i  245 (318)
T 3sov_A          243 REI  245 (318)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            443

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.21  E-value=0.0001  Score=79.07  Aligned_cols=263  Identities=10%  Similarity=0.026  Sum_probs=144.1

Q ss_pred             EEEECC-CCCEEEEEeCCC-----------eEEEEEcCCceeE---eec-cCCCCEEEEEeCCCCCEEEEeeC-CCcEEE
Q 008496          279 TLDWNG-EGTLLATGSYDG-----------QARIWSTNGDLKC---TLS-KHKGPIFSLKWNKKGDYLLTGSC-DKTAIV  341 (563)
Q Consensus       279 ~l~~s~-~g~~l~sg~~dg-----------~i~vw~~~~~~~~---~~~-~h~~~V~~l~~~~~~~~l~s~s~-D~~v~i  341 (563)
                      .+++.+ +|++++.|+.+.           .+.+||.......   .+. .+..-..++++..+++.++.|+. +..+.+
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~  269 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL  269 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence            456666 889999988653           5788887543221   121 12222335667789999898884 468999


Q ss_pred             EECCCCceeEEeeecccCe-EEEecC-CCceEEEEe-CC-----CeEEEEEcCCCcceee-------ecCCCcceeEEEE
Q 008496          342 WDVKTEEWKQQFEFHSGPT-LDVDWR-NNVSFATSS-TD-----NMIYVCKIGENRPIKT-------FAGHQGEVNCVKW  406 (563)
Q Consensus       342 wd~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~-~d-----~~i~~~~~~~~~~~~~-------~~~h~~~i~~~~~  406 (563)
                      ||+.+.+|...-....... ...... ++..++.++ .+     ..+.+|+..+..-...       +.....   ...+
T Consensus       270 yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~---~~~~  346 (656)
T 1k3i_A          270 YDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADK---QGLY  346 (656)
T ss_dssp             EEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCT---TGGG
T ss_pred             ecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccc---ccee
Confidence            9999888776433222211 122223 566677766 33     4578888765431111       000000   0112


Q ss_pred             CCCCCEEEEEeCCC---------cEEEEeCCCCceeeeecccCC---------CEEEEEEccCCCCCCCCCCcEEEEEEe
Q 008496          407 DPTGSLLASCSDDV---------TAKIWNMKQDKYVHDLREHSK---------EIYTIRWSPTGSGTNNPNQQLILASAS  468 (563)
Q Consensus       407 ~~~~~~las~s~dg---------~i~iwd~~~~~~~~~~~~~~~---------~i~~~~~~p~~~~~~~~~~~~~l~s~s  468 (563)
                      ..++++++.|+.+|         .+..||..+.........+..         .-.++.+...+       . .+++.|+
T Consensus       347 ~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~-------~-~i~v~GG  418 (656)
T 1k3i_A          347 RSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVK-------G-KILTFGG  418 (656)
T ss_dssp             TTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTT-------T-EEEEECC
T ss_pred             ecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCC-------C-eEEEEeC
Confidence            24555555565444         467788776654322211110         12233332211       1 3566666


Q ss_pred             CCC-----------eEEEEeCCCCeEEEEe--cCCCCC-EEEEEEcCCCCEEEEEeCC-----------CcEEEEecCCC
Q 008496          469 FDS-----------TVKLWDVELGKLLYSL--NGHREP-VYSLAFSPTGEYLASGSLD-----------KSMHIWSLKEG  523 (563)
Q Consensus       469 ~dg-----------~i~iwd~~~~~~~~~~--~~h~~~-i~~l~~spdg~~lasgs~d-----------g~v~iw~~~~~  523 (563)
                      .++           .|.+||..+..-....  ...... -.+++..|+|++++.|+.+           ..+.+||..+.
T Consensus       419 ~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~  498 (656)
T 1k3i_A          419 SPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQD  498 (656)
T ss_dssp             BSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGT
T ss_pred             CCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCC
Confidence            432           6888888766543322  111111 2345677999999999864           46899999876


Q ss_pred             eeEEEEec---CCCEEEEEEcCCCCEEEEEEC
Q 008496          524 KIVKTYTG---NGGIFEVCWNKEGDKIAACFA  552 (563)
Q Consensus       524 ~~~~~~~~---~~~i~~l~w~~~g~~la~~~~  552 (563)
                      +-...-..   ...-......++|+.+++|+.
T Consensus       499 ~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~  530 (656)
T 1k3i_A          499 TFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG  530 (656)
T ss_dssp             EEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred             ceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence            53221111   111123456799999999864

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=98.18  E-value=0.0055  Score=64.68  Aligned_cols=326  Identities=9%  Similarity=0.032  Sum_probs=170.4

Q ss_pred             CceEEEEECCCCCEEEEe-eCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCC-EEEEEe
Q 008496          216 SEVCACAWSPAGSLLASG-SGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT-LLATGS  293 (563)
Q Consensus       216 ~~V~~~~~sp~~~~latg-s~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~-~l~sg~  293 (563)
                      ..+.+++|++.+..|+.. ...+.|..+++......         ...+       .........|++.+.+. +.++-.
T Consensus        40 ~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~---------~~v~-------~~~~~~P~GlAvD~~~~~ly~~d~  103 (619)
T 3s94_A           40 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESV---------QNVV-------VSGLLSPDGLACDWLGEKLYWTDS  103 (619)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEEC-----C---------EEEE-------CSSCSCEEEEEEETTTTEEEEEET
T ss_pred             CceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCce---------EEEE-------eCCCCCcCeEEEEecCCEEEEEeC
Confidence            456789999976655544 45677888876532100         0000       01123477888888554 555555


Q ss_pred             CCCeEEEEEcCCceeEeec-cCCCCEEEEEeCCCCCEEEEeeC--CCcEEEEECCCCceeEEeeecc--cCeEEEecCCC
Q 008496          294 YDGQARIWSTNGDLKCTLS-KHKGPIFSLKWNKKGDYLLTGSC--DKTAIVWDVKTEEWKQQFEFHS--GPTLDVDWRNN  368 (563)
Q Consensus       294 ~dg~i~vw~~~~~~~~~~~-~h~~~V~~l~~~~~~~~l~s~s~--D~~v~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~  368 (563)
                      ..+.|.+.+.+|.....+. ..-....+|++.|.+.+|+....  .+.|...++.............  ..-+.++....
T Consensus       104 ~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~  183 (619)
T 3s94_A          104 ETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQ  183 (619)
T ss_dssp             TTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEEETTTT
T ss_pred             CCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEEEccCC
Confidence            6789999999987654443 33344578889887666665553  3456555654332222221111  12244454455


Q ss_pred             ceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccCCC------
Q 008496          369 VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKE------  442 (563)
Q Consensus       369 ~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~------  442 (563)
                      ..+++-...+.|..+++..........+.......+++..+ .++++-...+.|...|..+++....+......      
T Consensus       184 ~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~~~~i~~~~~~p~~i~v  262 (619)
T 3s94_A          184 KLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHA  262 (619)
T ss_dssp             EEEEEETTTCCEEEESSSCCEEC---------CCCEEESSS-EEEEECTTTCSEEEEESSSCCCCEECCSCCCCCSEEEE
T ss_pred             EEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC-EEEEecCCCCEEEEEECCCCcccEEEecCCCCCcEEEE
Confidence            56666666677877777654332222222223346777655 55556556778888887665432222110000      


Q ss_pred             -------------------E--EEE---------EEccCCC-------CCCCCCCcEEEEEEeCCCeEEEEeCCCCeE--
Q 008496          443 -------------------I--YTI---------RWSPTGS-------GTNNPNQQLILASASFDSTVKLWDVELGKL--  483 (563)
Q Consensus       443 -------------------i--~~~---------~~~p~~~-------~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~--  483 (563)
                                         +  .|+         +..|.|.       .+...... +|+.+. .+.|+..++.....  
T Consensus       263 ~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~-~Ll~~~-~~~i~~i~l~~~~~~~  340 (619)
T 3s94_A          263 FSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATE-LLLLAR-RTDLRRISLDTPDFTD  340 (619)
T ss_dssp             CCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCSSCSE-EEEEEE-SSCEEEEESSSTTCCC
T ss_pred             EccccCCCccccccCCCCcccceEECCCCCCCceEeCCchheecccCcccCCCCce-EEEEEc-ccceEEEecCCCccce
Confidence                               0  111         1112221       11111222 333332 35677777765421  


Q ss_pred             -EEEecCCCCCEEEEEEcCCCCEEE-EEeCCCcEEEEecCCCeeEEEEec-CCCEEEEEEcCCCCEEEEE-ECCCeEEEE
Q 008496          484 -LYSLNGHREPVYSLAFSPTGEYLA-SGSLDKSMHIWSLKEGKIVKTYTG-NGGIFEVCWNKEGDKIAAC-FANHTVCVL  559 (563)
Q Consensus       484 -~~~~~~h~~~i~~l~~spdg~~la-sgs~dg~v~iw~~~~~~~~~~~~~-~~~i~~l~w~~~g~~la~~-~~~~~v~v~  559 (563)
                       ...+.+ -..+.+|+|.+.+..|. +-...+.|+.+++........... -..+..++++..+..|..+ ...+.|.|.
T Consensus       341 ~~~~~~~-l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~  419 (619)
T 3s94_A          341 IVLQLED-IRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVT  419 (619)
T ss_dssp             EECCCSC-CSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             eEEeccc-cCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEE
Confidence             111122 23467899998655554 444577899998865433333322 2356788888766655554 456777777


Q ss_pred             Ee
Q 008496          560 DF  561 (563)
Q Consensus       560 ~~  561 (563)
                      ++
T Consensus       420 ~~  421 (619)
T 3s94_A          420 RL  421 (619)
T ss_dssp             ET
T ss_pred             eC
Confidence            64

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.16  E-value=0.0022  Score=59.00  Aligned_cols=200  Identities=9%  Similarity=0.152  Sum_probs=126.1

Q ss_pred             eeccCCCCEEEEEeCCCCCEEEE-eeCCCcEEEEECCCCceeEEeeecc-cCeEEEecCCCceEEE-EeCCCeEEEEEcC
Q 008496          310 TLSKHKGPIFSLKWNKKGDYLLT-GSCDKTAIVWDVKTEEWKQQFEFHS-GPTLDVDWRNNVSFAT-SSTDNMIYVCKIG  386 (563)
Q Consensus       310 ~~~~h~~~V~~l~~~~~~~~l~s-~s~D~~v~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~d~~i~~~~~~  386 (563)
                      .+.+-...+.+++|+|++..|++ ...++.|...|+. ++..+.+.... ...-.+.+..+..|+. .-.++.++++++.
T Consensus        21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~   99 (255)
T 3qqz_A           21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT   99 (255)
T ss_dssp             ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred             ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence            45566678999999998776654 6678889999987 77777665432 3445566666666644 4466788888876


Q ss_pred             CCcce---eeec------CCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCC---Cceeeeec-------ccCCCEEEEE
Q 008496          387 ENRPI---KTFA------GHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQ---DKYVHDLR-------EHSKEIYTIR  447 (563)
Q Consensus       387 ~~~~~---~~~~------~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~---~~~~~~~~-------~~~~~i~~~~  447 (563)
                      ....+   ....      ..+.....++|+|.++.|.++.......||.++.   ...+..+.       .+.....+++
T Consensus       100 ~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~  179 (255)
T 3qqz_A          100 PNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAE  179 (255)
T ss_dssp             TTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEE
T ss_pred             CCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEE
Confidence            54421   1111      1234568999999987776666655555555431   11111110       1223456788


Q ss_pred             EccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEe--cC-C------CCCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 008496          448 WSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSL--NG-H------REPVYSLAFSPTGEYLASGSLDKSMHIW  518 (563)
Q Consensus       448 ~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~--~~-h------~~~i~~l~~spdg~~lasgs~dg~v~iw  518 (563)
                      +.|...        .+++.......|.++|.. |+.+..+  .. .      -..-..|+|.|+|+++++ +.-+.+++|
T Consensus       180 ~dp~tg--------~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f  249 (255)
T 3qqz_A          180 FNQQKN--------TLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYRF  249 (255)
T ss_dssp             EETTTT--------EEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEEE
T ss_pred             EcCCCC--------eEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEEE
Confidence            877532        356667778889999976 5554443  31 1      124588999999986555 777777776


Q ss_pred             ec
Q 008496          519 SL  520 (563)
Q Consensus       519 ~~  520 (563)
                      ..
T Consensus       250 ~~  251 (255)
T 3qqz_A          250 TP  251 (255)
T ss_dssp             EC
T ss_pred             Ee
Confidence            54

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=98.14  E-value=0.0069  Score=58.46  Aligned_cols=272  Identities=8%  Similarity=0.020  Sum_probs=143.0

Q ss_pred             CceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEEeCC
Q 008496          216 SEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYD  295 (563)
Q Consensus       216 ~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~d  295 (563)
                      ..+.++.|.+.+..++. +.++.|.. ....+..-..             ...........+..+.+++ +..++ ++..
T Consensus        36 ~~~~~v~~~~~~~~~~~-G~~g~i~~-s~DgG~tW~~-------------~~~~~~~~~~~~~~i~~~~-~~~~~-~g~~   98 (327)
T 2xbg_A           36 ATILDMSFIDRHHGWLV-GVNATLME-TRDGGQTWEP-------------RTLVLDHSDYRFNSVSFQG-NEGWI-VGEP   98 (327)
T ss_dssp             SCEEEEEESSSSCEEEE-ETTTEEEE-ESSTTSSCEE-------------CCCCCSCCCCEEEEEEEET-TEEEE-EEET
T ss_pred             CcEEEEEECCCCcEEEE-cCCCeEEE-eCCCCCCCeE-------------CCCCCCCCCccEEEEEecC-CeEEE-EECC
Confidence            46889999888887774 45675532 2222221000             0000011134578888876 44444 4556


Q ss_pred             CeEEEEEcCC-ceeEeec---cCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecCCCceE
Q 008496          296 GQARIWSTNG-DLKCTLS---KHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSF  371 (563)
Q Consensus       296 g~i~vw~~~~-~~~~~~~---~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  371 (563)
                      |.|.. ..++ .--..+.   .+.+.+..+.+.+++..++++ .++.|..-+-....+..........+..+.+..+..+
T Consensus        99 g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~  176 (327)
T 2xbg_A           99 PIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYRTKDSGKNWQALVQEAIGVMRNLNRSPSGEY  176 (327)
T ss_dssp             TEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEEESSTTSSEEEEECSCCCCEEEEEECTTSCE
T ss_pred             CeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEEEcCCCCCCEEeecCCCcceEEEEEcCCCcE
Confidence            65544 3443 3222221   234567888877766655554 4565433211223344433333345566666655556


Q ss_pred             EEEeCCCeEEEEEcCCCcceee-ecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeec----ccCCCEEEE
Q 008496          372 ATSSTDNMIYVCKIGENRPIKT-FAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLR----EHSKEIYTI  446 (563)
Q Consensus       372 ~~~~~d~~i~~~~~~~~~~~~~-~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~----~~~~~i~~~  446 (563)
                      +..+.++.++.-.-..+..-.. -.+....+..+.+.+++.+++ ++.+|.+++++...++.-..+.    .+...++++
T Consensus       177 ~~~g~~G~~~~S~d~gG~tW~~~~~~~~~~~~~~~~~~~g~~~~-~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v  255 (327)
T 2xbg_A          177 VAVSSRGSFYSTWEPGQTAWEPHNRTTSRRLHNMGFTPDGRLWM-IVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDL  255 (327)
T ss_dssp             EEEETTSSEEEEECTTCSSCEEEECCSSSCEEEEEECTTSCEEE-EETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEE
T ss_pred             EEEECCCcEEEEeCCCCCceeECCCCCCCccceeEECCCCCEEE-EeCCceEEEecCCCCCeeEeccCCcccCCcceEEE
Confidence            6666666666544221111111 123445688899999988764 4567887776422222211111    122357888


Q ss_pred             EEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEec---CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 008496          447 RWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLN---GHREPVYSLAFSPTGEYLASGSLDKSMHIWS  519 (563)
Q Consensus       447 ~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~---~h~~~i~~l~~spdg~~lasgs~dg~v~iw~  519 (563)
                      .+.|++.         ++++ +.+|.| ++..+.|+.-..+.   .....++++.|.+++. +++++.+|.|.-++
T Consensus       256 ~~~~~~~---------~~~~-g~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G~~G~i~~~~  319 (327)
T 2xbg_A          256 AYRTPNE---------VWLA-GGAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQ-GFILGQKGILLRYV  319 (327)
T ss_dssp             EESSSSC---------EEEE-ESTTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTE-EEEECSTTEEEEEC
T ss_pred             EecCCCE---------EEEE-eCCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCc-eEEEcCCceEEEEc
Confidence            8877543         4444 457767 44445454333333   2235678899986655 55566788776665

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.14  E-value=0.0014  Score=66.02  Aligned_cols=233  Identities=15%  Similarity=0.156  Sum_probs=135.6

Q ss_pred             EEEEEeCCC--CCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecCCCc-eEEEEeCC---C-eEEEEEcCCCcc
Q 008496          318 IFSLKWNKK--GDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNV-SFATSSTD---N-MIYVCKIGENRP  390 (563)
Q Consensus       318 V~~l~~~~~--~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d---~-~i~~~~~~~~~~  390 (563)
                      ...|+|+|+  +..|+.+...+.|+.+|+.++....... .......+.+..+. .+++....   . .+...+......
T Consensus       141 P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~-~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~~  219 (433)
T 4hw6_A          141 IWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTT-NIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGFT  219 (433)
T ss_dssp             CCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECC-CCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTTC
T ss_pred             CceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeec-CCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCee
Confidence            468899984  4556666555899999998776554332 22223444443322 33332211   1 122222111110


Q ss_pred             -eeeecCCCcceeEEEECC-CCCEEEEEeCCCcEEEEeCCCCceeeeecc--cCCCEEEEEEccCCCCCCCCCCcEEEEE
Q 008496          391 -IKTFAGHQGEVNCVKWDP-TGSLLASCSDDVTAKIWNMKQDKYVHDLRE--HSKEIYTIRWSPTGSGTNNPNQQLILAS  466 (563)
Q Consensus       391 -~~~~~~h~~~i~~~~~~~-~~~~las~s~dg~i~iwd~~~~~~~~~~~~--~~~~i~~~~~~p~~~~~~~~~~~~~l~s  466 (563)
                       ...+. .-.....++++| ++.++++-..++.|+.++..++.....+..  ....-..++|+|++.        .+.++
T Consensus       220 ~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~--------~LYva  290 (433)
T 4hw6_A          220 ERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGD--------WAYII  290 (433)
T ss_dssp             CEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSS--------EEEEE
T ss_pred             cccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCC--------EEEEE
Confidence             01111 123356788999 777777777788899999876655222211  112234689988774        34555


Q ss_pred             EeCCCeEEEEeCC--CCeE--EEEecCC---------------CCCEEEEEE---------cCCCCEEEEEeCCCcEEEE
Q 008496          467 ASFDSTVKLWDVE--LGKL--LYSLNGH---------------REPVYSLAF---------SPTGEYLASGSLDKSMHIW  518 (563)
Q Consensus       467 ~s~dg~i~iwd~~--~~~~--~~~~~~h---------------~~~i~~l~~---------spdg~~lasgs~dg~v~iw  518 (563)
                      -...+.|+.++..  ++..  ...+.+.               -..-..+++         .++|.++++-...++|+.+
T Consensus       291 d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~  370 (433)
T 4hw6_A          291 YNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVL  370 (433)
T ss_dssp             ETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEE
T ss_pred             eCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEE
Confidence            6667889998764  2321  1111111               122467999         7888888877778899999


Q ss_pred             ecCCCeeEEEEecC-------------------CCEEEEEEc-CCCCEEEEEECCCeEEEEEee
Q 008496          519 SLKEGKIVKTYTGN-------------------GGIFEVCWN-KEGDKIAACFANHTVCVLDFR  562 (563)
Q Consensus       519 ~~~~~~~~~~~~~~-------------------~~i~~l~w~-~~g~~la~~~~~~~v~v~~~~  562 (563)
                      +. +|.+. ++.+.                   .....|+++ ++|..+++=..+..|+.++..
T Consensus       371 ~~-~G~v~-t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e  432 (433)
T 4hw6_A          371 TP-EGRVT-TYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE  432 (433)
T ss_dssp             CT-TSEEE-EEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             CC-CCCEE-EEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence            85 56543 33321                   126789999 677777676778899988764

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.11  E-value=0.0078  Score=57.76  Aligned_cols=218  Identities=13%  Similarity=0.057  Sum_probs=126.7

Q ss_pred             EEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecC--CCceEEEEeCCCeEEEEEcCC----CcceeeecCCCcceeE
Q 008496          330 LLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR--NNVSFATSSTDNMIYVCKIGE----NRPIKTFAGHQGEVNC  403 (563)
Q Consensus       330 l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~i~~~~~~~----~~~~~~~~~h~~~i~~  403 (563)
                      |+.+. ...|+..|+.+......+. ....+..+.|.  .+..|.+-...+.|+.++...    ......+...-.....
T Consensus         4 ll~~~-~~~I~~i~~~~~~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~g   81 (316)
T 1ijq_A            4 LFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDG   81 (316)
T ss_dssp             EEEEC-BSSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCE
T ss_pred             EEEEC-CCeEEEEECCCcceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCE
Confidence            44433 3568888888766544332 22334455554  455667777788999888765    2222223222245678


Q ss_pred             EEECCC-CCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCC-CeEEEEeCCCC
Q 008496          404 VKWDPT-GSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFD-STVKLWDVELG  481 (563)
Q Consensus       404 ~~~~~~-~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~d-g~i~iwd~~~~  481 (563)
                      +++++. +++.++-...+.|.+.++........+.........++..|.+.        .++.+.... +.|...++. |
T Consensus        82 lavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g--------~ly~~d~~~~~~I~~~~~d-G  152 (316)
T 1ijq_A           82 LAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHG--------FMYWTDWGTPAKIKKGGLN-G  152 (316)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTT--------EEEEEECSSSCEEEEEETT-S
T ss_pred             EEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCC--------EEEEEccCCCCeEEEEcCC-C
Confidence            899865 45556666788999999875543322222334567888887543        233443333 678888875 3


Q ss_pred             eEEEEe-cCCCCCEEEEEEcCCCCEEEEE-eCCCcEEEEecCCCeeEEEE-ec---CCCEEEEEEcCCCCEEEEEECCCe
Q 008496          482 KLLYSL-NGHREPVYSLAFSPTGEYLASG-SLDKSMHIWSLKEGKIVKTY-TG---NGGIFEVCWNKEGDKIAACFANHT  555 (563)
Q Consensus       482 ~~~~~~-~~h~~~i~~l~~spdg~~lasg-s~dg~v~iw~~~~~~~~~~~-~~---~~~i~~l~w~~~g~~la~~~~~~~  555 (563)
                      .....+ ...-...+.|+++|++..|..+ +..+.|..+++.... .+.+ ..   -.....++.. .+....+-..++.
T Consensus       153 ~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~-~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~  230 (316)
T 1ijq_A          153 VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEA  230 (316)
T ss_dssp             CCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTE
T ss_pred             CCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCc-eEEEeecCCccCCcEEEEEE-CCEEEEEECCCCe
Confidence            333322 2223456899999987666554 456789999986432 2222 21   2346778885 3445555566777


Q ss_pred             EEEEE
Q 008496          556 VCVLD  560 (563)
Q Consensus       556 v~v~~  560 (563)
                      |..+|
T Consensus       231 V~~~~  235 (316)
T 1ijq_A          231 IFSAN  235 (316)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            77776

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.04  E-value=0.0097  Score=57.99  Aligned_cols=214  Identities=10%  Similarity=-0.005  Sum_probs=124.2

Q ss_pred             CCcEEEEECCCCceeEEeeecccCeEEEec--CCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCC-CCE
Q 008496          336 DKTAIVWDVKTEEWKQQFEFHSGPTLDVDW--RNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT-GSL  412 (563)
Q Consensus       336 D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~-~~~  412 (563)
                      ...|+..++........... ...+..++|  ..+..+.+-...+.|+.++.........+.........+++++. +.+
T Consensus        52 ~~~I~~i~~~g~~~~~~~~~-~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~l  130 (349)
T 3v64_C           52 RIDIRQVLPHRSEYTLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKL  130 (349)
T ss_dssp             BSCEEEECTTSCCEEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEE
T ss_pred             ccceEEEeCCCCeeEEeecC-CCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeE
Confidence            34577777765544332221 223445555  44556666667788888888765443333333345678899875 455


Q ss_pred             EEEEeCCCcEEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCC-CeEEEEeCCCCeEEEEe-cCC
Q 008496          413 LASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFD-STVKLWDVELGKLLYSL-NGH  490 (563)
Q Consensus       413 las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~d-g~i~iwd~~~~~~~~~~-~~h  490 (563)
                      +++-...+.|.+.++........+.........+++.|.+.        .+..+-... +.|...++... ....+ ...
T Consensus       131 y~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g--------~ly~td~~~~~~I~r~~~dG~-~~~~~~~~~  201 (349)
T 3v64_C          131 YWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEG--------TIYWTDWGNTPRIEASSMDGS-GRRIIADTH  201 (349)
T ss_dssp             EEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTT--------EEEEEECSSSCEEEEEETTSC-SCEESCCSS
T ss_pred             EEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcC--------eEEEeccCCCCEEEEEeCCCC-CcEEEEECC
Confidence            56666678899999876543332333334567888887542        244454445 77888887632 22222 222


Q ss_pred             CCCEEEEEEcCCCCEEEEE-eCCCcEEEEecCCCeeEEEEe-cCCCEEEEEEcCCCCEEEEEECCCeEEEEE
Q 008496          491 REPVYSLAFSPTGEYLASG-SLDKSMHIWSLKEGKIVKTYT-GNGGIFEVCWNKEGDKIAACFANHTVCVLD  560 (563)
Q Consensus       491 ~~~i~~l~~spdg~~lasg-s~dg~v~iw~~~~~~~~~~~~-~~~~i~~l~w~~~g~~la~~~~~~~v~v~~  560 (563)
                      -...+.|+|+|++..|..+ +..+.|..+++.......... .-.....++. ..+....+-..++.|..+|
T Consensus       202 ~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~  272 (349)
T 3v64_C          202 LFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSAN  272 (349)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEE
T ss_pred             CCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEE-ECCEEEEecCCCCeEEEEE
Confidence            2346899999877665544 456789999986433222222 2234677777 3444444445566676665

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.01  E-value=0.0045  Score=61.36  Aligned_cols=221  Identities=10%  Similarity=0.002  Sum_probs=128.5

Q ss_pred             EEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEec--CCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEE
Q 008496          329 YLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDW--RNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKW  406 (563)
Q Consensus       329 ~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~  406 (563)
                      +|+.+. ...|+..++........... ...+..+.|  ..+..|.+-...+.|+.++.........+.........+++
T Consensus        89 ~l~~~~-~~~I~~i~~~~~~~~~~~~~-~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glav  166 (386)
T 3v65_B           89 VLLFAN-RIDIRQVLPHRSEYTLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAV  166 (386)
T ss_dssp             EEEEEC-BSCEEEECTTSCCCEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEE
T ss_pred             eeEeec-CccceeeccCCCcEEEEecC-CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEE
Confidence            444333 35678888776554433322 223445555  44556667677788988888765443333333334567888


Q ss_pred             CCC-CCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCC-CeEEEEeCCCCeEE
Q 008496          407 DPT-GSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFD-STVKLWDVELGKLL  484 (563)
Q Consensus       407 ~~~-~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~d-g~i~iwd~~~~~~~  484 (563)
                      ++. +.++++-...+.|.+.++........+.........+++.|.+.        .+..+-... +.|..+++......
T Consensus       167 d~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g--------~ly~td~~~~~~I~r~~~dG~~~~  238 (386)
T 3v65_B          167 DWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEG--------TIYWTDWGNTPRIEASSMDGSGRR  238 (386)
T ss_dssp             ETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTT--------EEEEEECSSSCEEEEEETTSCSCE
T ss_pred             EeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCC--------eEEEeccCCCCEEEEEeCCCCCcE
Confidence            875 45556666677888888775543332333334567888887543        244444444 77888887643222


Q ss_pred             EEecCCCCCEEEEEEcCCCCEEEEE-eCCCcEEEEecCCCeeEEEEe-cCCCEEEEEEcCCCCEEEEEECCCeEEEEE
Q 008496          485 YSLNGHREPVYSLAFSPTGEYLASG-SLDKSMHIWSLKEGKIVKTYT-GNGGIFEVCWNKEGDKIAACFANHTVCVLD  560 (563)
Q Consensus       485 ~~~~~h~~~i~~l~~spdg~~lasg-s~dg~v~iw~~~~~~~~~~~~-~~~~i~~l~w~~~g~~la~~~~~~~v~v~~  560 (563)
                      ......-...+.|+|+|++..|..+ +..+.|..+++.......... .......|+. ..+..+.+-..++.|..+|
T Consensus       239 ~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~  315 (386)
T 3v65_B          239 IIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSAN  315 (386)
T ss_dssp             EEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEE
T ss_pred             EEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEE-ECCEEEEeeCCCCeEEEEE
Confidence            2222223346899999876665544 456789999986433322222 2334677777 3444445555667777665

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.01  E-value=0.006  Score=61.41  Aligned_cols=233  Identities=10%  Similarity=0.037  Sum_probs=125.3

Q ss_pred             CeEEEEECCC--CCEEEEEeCCCeEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEEEeeCC----Cc-EEEEECCCCc
Q 008496          276 DVTTLDWNGE--GTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCD----KT-AIVWDVKTEE  348 (563)
Q Consensus       276 ~V~~l~~s~~--g~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D----~~-v~iwd~~~~~  348 (563)
                      ....|+|+|+  +..|..+...+.|+.++..+.....+........+++|+++|+ |+.+...    .. +...+.. +.
T Consensus       140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~-~~  217 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRA-SG  217 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGG-GT
T ss_pred             CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeecCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECC-CC
Confidence            4568999984  3344444444899999985544444544455678999999999 5444432    22 3333322 21


Q ss_pred             ee--EEeee-cccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeee-c-CCCcceeEEEECCCCC-EEEEEeCCCcE
Q 008496          349 WK--QQFEF-HSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTF-A-GHQGEVNCVKWDPTGS-LLASCSDDVTA  422 (563)
Q Consensus       349 ~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~-~-~h~~~i~~~~~~~~~~-~las~s~dg~i  422 (563)
                      +.  ..+.. ....-+.++......+++...++.|+.++.........+ . +....-..++|+|+++ ++++-...+.|
T Consensus       218 ~~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I  297 (433)
T 4hw6_A          218 FTERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCI  297 (433)
T ss_dssp             TCCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEE
T ss_pred             eeccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEE
Confidence            11  11111 111112233323445555556677888877644431222 1 1122234699999998 55566667889


Q ss_pred             EEEeCCC--Cce--eeeeccc---------------CCCEEEEEE---------ccCCCCCCCCCCcEEEEEEeCCCeEE
Q 008496          423 KIWNMKQ--DKY--VHDLREH---------------SKEIYTIRW---------SPTGSGTNNPNQQLILASASFDSTVK  474 (563)
Q Consensus       423 ~iwd~~~--~~~--~~~~~~~---------------~~~i~~~~~---------~p~~~~~~~~~~~~~l~s~s~dg~i~  474 (563)
                      +.++...  +..  ...+.+.               -..-..+++         .+.+         .+.++-...+.|+
T Consensus       298 ~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g---------~lyvaD~~n~~I~  368 (433)
T 4hw6_A          298 YRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEY---------DFYFCDRDSHTVR  368 (433)
T ss_dssp             EEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCE---------EEEEEETTTTEEE
T ss_pred             EEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCC---------cEEEEECCCCEEE
Confidence            9987652  221  0111111               012344666         3322         2445556677888


Q ss_pred             EEeCCCCeEEEEecCC------------------CCCEEEEEEc-CCCCEEEEEeCCCcEEEEecC
Q 008496          475 LWDVELGKLLYSLNGH------------------REPVYSLAFS-PTGEYLASGSLDKSMHIWSLK  521 (563)
Q Consensus       475 iwd~~~~~~~~~~~~h------------------~~~i~~l~~s-pdg~~lasgs~dg~v~iw~~~  521 (563)
                      .++. .|... ++.+.                  -..-..|+++ ++|.++++=...++|+.++++
T Consensus       369 ~~~~-~G~v~-t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e  432 (433)
T 4hw6_A          369 VLTP-EGRVT-TYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE  432 (433)
T ss_dssp             EECT-TSEEE-EEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             EECC-CCCEE-EEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence            8885 45443 33221                  0125678888 566666655566677777653

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.97  E-value=0.0074  Score=65.34  Aligned_cols=226  Identities=12%  Similarity=0.074  Sum_probs=135.9

Q ss_pred             CCeEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEE-EeeCCCcEEEEECCCC----ceeEEee--ecccCeEEEecCC
Q 008496          295 DGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLL-TGSCDKTAIVWDVKTE----EWKQQFE--FHSGPTLDVDWRN  367 (563)
Q Consensus       295 dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~-s~s~D~~v~iwd~~~~----~~~~~~~--~~~~~~~~~~~~~  367 (563)
                      ...|+..++.+.....+......+.+|+|++.+..|+ +-...+.|+.+++...    .....+.  .....-+.++|..
T Consensus       403 ~~~Ir~i~l~~~~~~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~  482 (791)
T 3m0c_C          403 RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIH  482 (791)
T ss_dssp             BSSEEEECTTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTT
T ss_pred             ccceeEeeccCCcceeeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecC
Confidence            3567777776554444444456678999998666555 4445678888888653    1222222  1233457889998


Q ss_pred             CceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEe-C-CCcEEEEeCCCCceeeeecccCCCEEE
Q 008496          368 NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCS-D-DVTAKIWNMKQDKYVHDLREHSKEIYT  445 (563)
Q Consensus       368 ~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s-~-dg~i~iwd~~~~~~~~~~~~~~~~i~~  445 (563)
                      ...+++-...+.|.+.++........+...-.....|+++|.+..|.... . .+.|...++........+...-.....
T Consensus       483 ~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~G  562 (791)
T 3m0c_C          483 SNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNG  562 (791)
T ss_dssp             TEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEE
T ss_pred             CcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceE
Confidence            88888888889999999876544333333445678999999755554443 2 367888888755443333333345677


Q ss_pred             EEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecC--CCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 008496          446 IRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNG--HREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEG  523 (563)
Q Consensus       446 ~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~--h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~  523 (563)
                      |++.+...        .+..+-...+.|...++........+..  ......+|++..+ .++++-...+.|...+..+|
T Consensus       563 LavD~~~~--------~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~~-~lYwtD~~~~~I~~~dk~tG  633 (791)
T 3m0c_C          563 ITLDLLSG--------RLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTG  633 (791)
T ss_dssp             EEEETTTT--------EEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETT-EEEEEETTTTEEEEEETTTC
T ss_pred             EEEecCCC--------eEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeCC-EEEEEECCCCEEEEEeCCCC
Confidence            88876542        2444445567888888864332222222  1223456666433 34444455678888887777


Q ss_pred             eeEEEE
Q 008496          524 KIVKTY  529 (563)
Q Consensus       524 ~~~~~~  529 (563)
                      +.+..+
T Consensus       634 ~~~~~l  639 (791)
T 3m0c_C          634 SDVNLL  639 (791)
T ss_dssp             CCCEEE
T ss_pred             cceEEe
Confidence            544443

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=97.93  E-value=0.018  Score=57.24  Aligned_cols=221  Identities=10%  Similarity=0.019  Sum_probs=126.7

Q ss_pred             EEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEec--CCCceEEEEeCCCeEEEEEcCCC----cceeeecCCCccee
Q 008496          329 YLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDW--RNNVSFATSSTDNMIYVCKIGEN----RPIKTFAGHQGEVN  402 (563)
Q Consensus       329 ~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~d~~i~~~~~~~~----~~~~~~~~h~~~i~  402 (563)
                      +|+.+ ....|+..++.......... ....+..++|  ..+..|.+-...+.|+.+++...    .....+........
T Consensus        85 ~ll~~-~~~~I~~i~l~~~~~~~~~~-~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~  162 (400)
T 3p5b_L           85 YLFFT-NRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD  162 (400)
T ss_dssp             EEEEE-ETTEEEEECTTSCSCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEE
T ss_pred             eeEEe-ccceeEEEccCCcceeEecc-ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcc
Confidence            44433 34678888887665444332 2233445555  45566677677788888887642    22233332344577


Q ss_pred             EEEECC-CCCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEE-eCCCeEEEEeCCC
Q 008496          403 CVKWDP-TGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASA-SFDSTVKLWDVEL  480 (563)
Q Consensus       403 ~~~~~~-~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~-s~dg~i~iwd~~~  480 (563)
                      .+++++ .+++.++-...+.|.+.++........+.........|+..|.+.        .+..+- +..+.|...++..
T Consensus       163 glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g--------~ly~td~~~~~~I~~~~~dG  234 (400)
T 3p5b_L          163 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHG--------FMYWTDWGTPAKIKKGGLNG  234 (400)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTT--------EEEEEECSSSCCEEEEETTS
T ss_pred             cEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccC--------eEEEEeCCCCCEEEEEeCCC
Confidence            899987 455666666788999999876654333333334467888887542        233333 2246788888764


Q ss_pred             CeEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCCcEEEEecCCCeeEEEEec---CCCEEEEEEcCCCCEEEEEECCCeE
Q 008496          481 GKLLYSLNGHREPVYSLAFSPTGEYLASGS-LDKSMHIWSLKEGKIVKTYTG---NGGIFEVCWNKEGDKIAACFANHTV  556 (563)
Q Consensus       481 ~~~~~~~~~h~~~i~~l~~spdg~~lasgs-~dg~v~iw~~~~~~~~~~~~~---~~~i~~l~w~~~g~~la~~~~~~~v  556 (563)
                      ......+...-...+.|+++|++..|..+. ..+.|..+++...........   -...+.|+.. .+..+.+-..++.|
T Consensus       235 ~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V  313 (400)
T 3p5b_L          235 VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAI  313 (400)
T ss_dssp             CSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSE
T ss_pred             CccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeE
Confidence            332222222234568999999877766554 467899999865433222222   1335666663 23344444556666


Q ss_pred             EEEE
Q 008496          557 CVLD  560 (563)
Q Consensus       557 ~v~~  560 (563)
                      ..+|
T Consensus       314 ~~~~  317 (400)
T 3p5b_L          314 FSAN  317 (400)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            6665

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.91  E-value=0.013  Score=59.26  Aligned_cols=240  Identities=13%  Similarity=0.163  Sum_probs=139.1

Q ss_pred             CeEEEEECCC--CCEEEEEeCCCeEEEEEcCCceeEeeccC----CCCEEEEEe-------CCCCCEEEEeeCCC-c---
Q 008496          276 DVTTLDWNGE--GTLLATGSYDGQARIWSTNGDLKCTLSKH----KGPIFSLKW-------NKKGDYLLTGSCDK-T---  338 (563)
Q Consensus       276 ~V~~l~~s~~--g~~l~sg~~dg~i~vw~~~~~~~~~~~~h----~~~V~~l~~-------~~~~~~l~s~s~D~-~---  338 (563)
                      ....|+|+|.  ++++++-...+.|++.|..+..+..+..-    ......|+|       +++|.+|+.+...+ .   
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~  219 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE  219 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence            4678999983  45555544457788899877655554322    224789999       99999777666543 2   


Q ss_pred             ---EEEEECCC-CceeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECC-CCCEE
Q 008496          339 ---AIVWDVKT-EEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDP-TGSLL  413 (563)
Q Consensus       339 ---v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~-~~~~l  413 (563)
                         |.+.+... +.+..              ..         ++          ..+..+.    ....++.+| ++.++
T Consensus       220 ~~~V~~i~r~~~G~~~~--------------~~---------~~----------~~v~~~~----~p~giavdp~~g~LY  262 (496)
T 3kya_A          220 SPSVYIIKRNADGTFDD--------------RS---------DI----------QLIAAYK----QCNGATIHPINGELY  262 (496)
T ss_dssp             EEEEEEEECCTTSCCST--------------TS---------CE----------EEEEEES----CCCCEEECTTTCCEE
T ss_pred             CceEEEEecCCCCceee--------------cc---------cc----------eeeccCC----CceEEEEcCCCCeEE
Confidence               33333211 11100              00         00          0011111    234678899 45666


Q ss_pred             EEEeCCCcEEEEeCC-------CCce-----------eeee-c-ccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeE
Q 008496          414 ASCSDDVTAKIWNMK-------QDKY-----------VHDL-R-EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTV  473 (563)
Q Consensus       414 as~s~dg~i~iwd~~-------~~~~-----------~~~~-~-~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i  473 (563)
                      ++-..++.|..+|+.       ++..           ...+ . .....-+.++|+|++.        .+.++-+....|
T Consensus       263 vtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~--------~lYvaD~~~h~I  334 (496)
T 3kya_A          263 FNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGK--------YAYFGVINNHYF  334 (496)
T ss_dssp             EEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSS--------EEEEEETTTTEE
T ss_pred             EEECCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCC--------EEEEEeCCCCEE
Confidence            677778889999986       4432           1111 1 1223457899999874        244555667888


Q ss_pred             EEEeC--CCCeE--EEEecC------CC---------CCEE-EEEEc-------CCCCEEEEEeCCCcEEEEecCCCeeE
Q 008496          474 KLWDV--ELGKL--LYSLNG------HR---------EPVY-SLAFS-------PTGEYLASGSLDKSMHIWSLKEGKIV  526 (563)
Q Consensus       474 ~iwd~--~~~~~--~~~~~~------h~---------~~i~-~l~~s-------pdg~~lasgs~dg~v~iw~~~~~~~~  526 (563)
                      +.++.  ..+..  ...+.+      ..         ..-. .++..       ++|.++++=....+|+.++ .+|. +
T Consensus       335 ~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~-v  412 (496)
T 3kya_A          335 MRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI-V  412 (496)
T ss_dssp             EEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB-E
T ss_pred             EEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCC-E
Confidence            88654  33332  012211      10         1123 44554       5677777767778999998 4664 4


Q ss_pred             EEEecC----------------C---------CEEEEEEcCC-CCEEEEEECCCeEEEEEee
Q 008496          527 KTYTGN----------------G---------GIFEVCWNKE-GDKIAACFANHTVCVLDFR  562 (563)
Q Consensus       527 ~~~~~~----------------~---------~i~~l~w~~~-g~~la~~~~~~~v~v~~~~  562 (563)
                      .++.+.                +         ....|+++++ |...++=..|..|+.+++.
T Consensus       413 ~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~  474 (496)
T 3kya_A          413 STYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISME  474 (496)
T ss_dssp             EEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred             EEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECC
Confidence            444332                1         2568999997 7666666778899988764

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.87  E-value=0.0086  Score=57.36  Aligned_cols=193  Identities=17%  Similarity=0.255  Sum_probs=121.0

Q ss_pred             CCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecCCCc---------eEEEEeC--CCeEEEEEcC-CCccee
Q 008496          325 KKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNV---------SFATSST--DNMIYVCKIG-ENRPIK  392 (563)
Q Consensus       325 ~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~--d~~i~~~~~~-~~~~~~  392 (563)
                      |....++.....+-+.+||+ .++.++.+..  +.+..++.+.+.         .+++.-.  +++|.++++. ...++.
T Consensus        38 p~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~  114 (355)
T 3amr_A           38 PQNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQ  114 (355)
T ss_dssp             GGGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEE
T ss_pred             CCccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCcee
Confidence            34456777777889999999 7777766543  334444433322         2455555  6899999885 223344


Q ss_pred             eecC------CC-cceeEEEE--CCC-CC-EEEEEeCCCcEEEEeCC-------CCceeeeecccCCCEEEEEEccCCCC
Q 008496          393 TFAG------HQ-GEVNCVKW--DPT-GS-LLASCSDDVTAKIWNMK-------QDKYVHDLREHSKEIYTIRWSPTGSG  454 (563)
Q Consensus       393 ~~~~------h~-~~i~~~~~--~~~-~~-~las~s~dg~i~iwd~~-------~~~~~~~~~~~~~~i~~~~~~p~~~~  454 (563)
                      .+..      .. ..+..+++  +|. ++ +++....+|.+..|++.       +.+.+++|... +.+-.+...+... 
T Consensus       115 ~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lg-sq~EgcvvDd~~g-  192 (355)
T 3amr_A          115 SMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMN-SQTEGMAADDEYG-  192 (355)
T ss_dssp             ECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECS-SCEEEEEEETTTT-
T ss_pred             eccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCC-CCcceEEEcCCCC-
Confidence            4421      11 44556777  774 44 57777888999999873       23445665543 3455666655432 


Q ss_pred             CCCCCCcEEEEEEeCCCeEEEEeCC-----CCeEEEEec-CC-CCCEEEEEE--cCCCC-EEEEEe-CCCcEEEEecC-C
Q 008496          455 TNNPNQQLILASASFDSTVKLWDVE-----LGKLLYSLN-GH-REPVYSLAF--SPTGE-YLASGS-LDKSMHIWSLK-E  522 (563)
Q Consensus       455 ~~~~~~~~~l~s~s~dg~i~iwd~~-----~~~~~~~~~-~h-~~~i~~l~~--spdg~-~lasgs-~dg~v~iw~~~-~  522 (563)
                              .|..+-.|.-|..++.+     +++.+..+. ++ ...+..|++  .++|+ ||++.+ .+.+..+|+.. +
T Consensus       193 --------~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~  264 (355)
T 3amr_A          193 --------RLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGK  264 (355)
T ss_dssp             --------EEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTT
T ss_pred             --------eEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCC
Confidence                    56778888666666754     355665552 22 235788877  56666 565555 67799999996 7


Q ss_pred             CeeEEEEe
Q 008496          523 GKIVKTYT  530 (563)
Q Consensus       523 ~~~~~~~~  530 (563)
                      .+.+..|.
T Consensus       265 ~~~vg~f~  272 (355)
T 3amr_A          265 NKYVADFR  272 (355)
T ss_dssp             CCEEEEEE
T ss_pred             CcEEEEEE
Confidence            78888884

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.87  E-value=0.0075  Score=58.86  Aligned_cols=68  Identities=15%  Similarity=0.243  Sum_probs=43.0

Q ss_pred             CeEEEEECCCCCEEEEEeCCCeEEEEEcCCceeEe--e---ccCCCCEEEEEeCCC---CCEEEEeeCC------CcEEE
Q 008496          276 DVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCT--L---SKHKGPIFSLKWNKK---GDYLLTGSCD------KTAIV  341 (563)
Q Consensus       276 ~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~~~~--~---~~h~~~V~~l~~~~~---~~~l~s~s~D------~~v~i  341 (563)
                      .-..++|.|+|+++++ ..+|.|++++ ++.....  +   .........|+|+|+   +.+|+.+...      +.|..
T Consensus        32 ~P~~ia~~pdG~l~V~-e~~g~I~~i~-~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r  109 (352)
T 2ism_A           32 VPWALAFLPDGGMLIA-ERPGRIRLFR-EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVR  109 (352)
T ss_dssp             CEEEEEECTTSCEEEE-ETTTEEEEEE-TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEE
T ss_pred             CceEEEEcCCCeEEEE-eCCCeEEEEE-CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEE
Confidence            3578999999996555 5669999998 5543211  1   112345789999998   5555554432      44555


Q ss_pred             EECC
Q 008496          342 WDVK  345 (563)
Q Consensus       342 wd~~  345 (563)
                      |+..
T Consensus       110 ~~~~  113 (352)
T 2ism_A          110 LRHL  113 (352)
T ss_dssp             EEEC
T ss_pred             EEeC
Confidence            5544

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.75  E-value=0.00026  Score=76.11  Aligned_cols=227  Identities=11%  Similarity=0.071  Sum_probs=130.0

Q ss_pred             CCeEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEEEee-CCCcEEEEECCC----CceeEEee--ecccCeEEEecCC
Q 008496          295 DGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGS-CDKTAIVWDVKT----EEWKQQFE--FHSGPTLDVDWRN  367 (563)
Q Consensus       295 dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s-~D~~v~iwd~~~----~~~~~~~~--~~~~~~~~~~~~~  367 (563)
                      .+.|+..+..+.....+......+.+|+|++.+..|+.+. ..+.|..+++.+    ......+.  ......+.++|..
T Consensus       385 ~~~I~~id~~~~~~~~~~~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~  464 (699)
T 1n7d_A          385 RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIH  464 (699)
T ss_dssp             TTC-CEECTTSCCEECCSCCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSS
T ss_pred             ccceEEEeCCCCcceeeeccCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeC
Confidence            3567777776654433333334557889998777776654 457899998875    22111111  1122345677777


Q ss_pred             CceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEe-CC-CcEEEEeCCCCceeeeecccCCCEEE
Q 008496          368 NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCS-DD-VTAKIWNMKQDKYVHDLREHSKEIYT  445 (563)
Q Consensus       368 ~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s-~d-g~i~iwd~~~~~~~~~~~~~~~~i~~  445 (563)
                      ...+++-...+.|.+++.........+.........|+++|.+..|+... .. +.|..+++........+...-..-..
T Consensus       465 g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnG  544 (699)
T 1n7d_A          465 SNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNG  544 (699)
T ss_dssp             SBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCC
T ss_pred             CcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccE
Confidence            77777777778898888765543333332234567889998655444333 22 67777776543221111111223456


Q ss_pred             EEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEec--CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 008496          446 IRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLN--GHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEG  523 (563)
Q Consensus       446 ~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~  523 (563)
                      |+|+|.+.        .+.++-+..+.|..+++........+.  ........|++..+ .++++....+.|..++..+|
T Consensus       545 lavd~~~~--------~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G  615 (699)
T 1n7d_A          545 ITLDLLSG--------RLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTG  615 (699)
T ss_dssp             EEECTTTC--------CEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTE
T ss_pred             EEEeccCC--------EEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCC
Confidence            78887643        244555677889999986432222221  11122345566544 44455556788999998888


Q ss_pred             eeEEEEe
Q 008496          524 KIVKTYT  530 (563)
Q Consensus       524 ~~~~~~~  530 (563)
                      +.+..+.
T Consensus       616 ~~~~~i~  622 (699)
T 1n7d_A          616 SDVNLLA  622 (699)
T ss_dssp             EEEECCC
T ss_pred             CceEEee
Confidence            8776654

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.74  E-value=0.0072  Score=57.90  Aligned_cols=181  Identities=14%  Similarity=0.251  Sum_probs=118.1

Q ss_pred             eEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCC----CC---E-EEEEeC--CCcEEEEeCC--CCceeeeec
Q 008496          370 SFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT----GS---L-LASCSD--DVTAKIWNMK--QDKYVHDLR  437 (563)
Q Consensus       370 ~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~----~~---~-las~s~--dg~i~iwd~~--~~~~~~~~~  437 (563)
                      .++.....+.+++|++ .++.++.+..  +.++.+..-|.    |+   + +++...  +++|.+|++.  ++ .+..+.
T Consensus        42 ~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~-~l~~i~  117 (355)
T 3amr_A           42 KLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNG-TLQSMT  117 (355)
T ss_dssp             EEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTC-CEEECS
T ss_pred             EEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCC-ceeecc
Confidence            3555566778999999 6777777653  56777776653    22   2 344444  6899999763  33 244432


Q ss_pred             c------cC-CCEEEEEE--ccCCCCCCCCCCcEEEEEEeCCCeEEEEeCC-------CCeEEEEecCCCCCEEEEEEcC
Q 008496          438 E------HS-KEIYTIRW--SPTGSGTNNPNQQLILASASFDSTVKLWDVE-------LGKLLYSLNGHREPVYSLAFSP  501 (563)
Q Consensus       438 ~------~~-~~i~~~~~--~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~-------~~~~~~~~~~h~~~i~~l~~sp  501 (563)
                      .      .. ..++.++.  +|..       +..++.....+|.+..|++.       ..+.+.++.- ...+..++..+
T Consensus       118 ~~~~pv~t~~~~pyGlcly~~~~~-------g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd  189 (355)
T 3amr_A          118 DPDHPIATAINEVYGFTLYHSQKT-------GKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADD  189 (355)
T ss_dssp             CTTSCEECCCSSCCCEEEEECTTT-------CCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEET
T ss_pred             ccccCcCCCCCCeeEEEEEecCCC-------CcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcC
Confidence            1      11 45566666  4532       23467778888999999872       3355666653 35688899999


Q ss_pred             CCCEEEEEeCCCcEEEEecC-----CCeeEEEEecC---CCEEEEEE--cCCCC-EEEEEE-CCCeEEEEEee
Q 008496          502 TGEYLASGSLDKSMHIWSLK-----EGKIVKTYTGN---GGIFEVCW--NKEGD-KIAACF-ANHTVCVLDFR  562 (563)
Q Consensus       502 dg~~lasgs~dg~v~iw~~~-----~~~~~~~~~~~---~~i~~l~w--~~~g~-~la~~~-~~~~v~v~~~~  562 (563)
                      ....|..+-.+.-|..++.+     +++++..+...   ..+-.|+.  .++|+ +|.+++ .+.+..|||.+
T Consensus       190 ~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~  262 (355)
T 3amr_A          190 EYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ  262 (355)
T ss_dssp             TTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred             CCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence            88999999998777777754     35566655332   35677776  56776 555554 57789999863

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.74  E-value=0.0023  Score=60.72  Aligned_cols=157  Identities=14%  Similarity=0.146  Sum_probs=105.6

Q ss_pred             CCCcceeEEEECCCCCEEEEEe-CCCcEEEEeCCCCceeee-ecc----c--CCCEEEEEE---ccCCCCCCCCCCcEEE
Q 008496          396 GHQGEVNCVKWDPTGSLLASCS-DDVTAKIWNMKQDKYVHD-LRE----H--SKEIYTIRW---SPTGSGTNNPNQQLIL  464 (563)
Q Consensus       396 ~h~~~i~~~~~~~~~~~las~s-~dg~i~iwd~~~~~~~~~-~~~----~--~~~i~~~~~---~p~~~~~~~~~~~~~l  464 (563)
                      +......+++|++....|..++ ..++|..|+...+..... +..    .  ...+..+.|   .|.+.         ++
T Consensus        10 ~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~gr---------L~   80 (334)
T 2p9w_A           10 VKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKR---------LF   80 (334)
T ss_dssp             CTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCE---------EE
T ss_pred             CcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCc---------EE
Confidence            3344456899988655555555 799999999875543322 221    1  113578888   56643         44


Q ss_pred             EEEe-------------CCCeEEEEeCC---CCeEEEEec--CC-----------CCCEEEEEEcCCCCEEEEEeCC-Cc
Q 008496          465 ASAS-------------FDSTVKLWDVE---LGKLLYSLN--GH-----------REPVYSLAFSPTGEYLASGSLD-KS  514 (563)
Q Consensus       465 ~s~s-------------~dg~i~iwd~~---~~~~~~~~~--~h-----------~~~i~~l~~spdg~~lasgs~d-g~  514 (563)
                      ++..             .+..|..+|+.   +++.++...  ..           ......++..++|+..++++.- +.
T Consensus        81 vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~  160 (334)
T 2p9w_A           81 AVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPA  160 (334)
T ss_dssp             EEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCE
T ss_pred             EEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCe
Confidence            4333             26789999998   777765543  11           1247899999999999999988 88


Q ss_pred             EEEEecCCCeeEEEEe-c------CCCEEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496          515 MHIWSLKEGKIVKTYT-G------NGGIFEVCWNKEGDKIAACFANHTVCVLDFR  562 (563)
Q Consensus       515 v~iw~~~~~~~~~~~~-~------~~~i~~l~w~~~g~~la~~~~~~~v~v~~~~  562 (563)
                      |...+.. |+.+..+. .      ..+.+.++++|+|+.|++....+.+..+|++
T Consensus       161 I~rV~pd-G~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~  214 (334)
T 2p9w_A          161 IARVSAD-GKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVS  214 (334)
T ss_dssp             EEEECTT-SCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECS
T ss_pred             EEEEeCC-CCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCC
Confidence            7777764 33333331 1      1235689999999999999779999988854

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.71  E-value=0.036  Score=53.06  Aligned_cols=215  Identities=8%  Similarity=-0.003  Sum_probs=120.0

Q ss_pred             CCcEEEEECCCCc--eeEEeeecccCeEEEecC--CCceEEEEeCCCeEEEEEcCCCcc-eeeecCCCcceeEEEECCC-
Q 008496          336 DKTAIVWDVKTEE--WKQQFEFHSGPTLDVDWR--NNVSFATSSTDNMIYVCKIGENRP-IKTFAGHQGEVNCVKWDPT-  409 (563)
Q Consensus       336 D~~v~iwd~~~~~--~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~i~~~~~~~~~~-~~~~~~h~~~i~~~~~~~~-  409 (563)
                      ...|+..|+....  ....+. .......++|.  .+..|.+-...+.|+.++...... ...+...-.....+++++. 
T Consensus        12 ~~~I~~i~l~~~~~~~~~~~~-~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~   90 (318)
T 3sov_A           12 RRDLRLVDATNGKENATIVVG-GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLG   90 (318)
T ss_dssp             EEEEEEEETTCTTSCCEEEEE-EEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTT
T ss_pred             cCeEEEEECCCCceEEEEEec-CCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCC
Confidence            4678888887653  111111 11234455554  456667777778888888765432 1122222234667888874 


Q ss_pred             CCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEE-eCCCeEEEEeCCCCeEEEEec
Q 008496          410 GSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASA-SFDSTVKLWDVELGKLLYSLN  488 (563)
Q Consensus       410 ~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~-s~dg~i~iwd~~~~~~~~~~~  488 (563)
                      +.++++-...+.|.++++........+.........+++.|.+.        .+..+- +..+.|...++.-......+.
T Consensus        91 g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g--------~ly~td~~~~~~I~r~~~dG~~~~~~~~  162 (318)
T 3sov_A           91 EKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSG--------FMYWTDWGEVPKIERAGMDGSSRFIIIN  162 (318)
T ss_dssp             TEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGT--------EEEEEECSSSCEEEEEETTSCSCEEEEC
T ss_pred             CeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCC--------EEEEEecCCCCEEEEEEcCCCCeEEEEE
Confidence            55556666778999999876543222223334567888887532        233333 235778888776322211122


Q ss_pred             CCCCCEEEEEEcCCCCEEEEE-eCCCcEEEEecCCCeeEEEEe-cCCCEEEEEEcCCCCEEEEEECCCeEEEEE
Q 008496          489 GHREPVYSLAFSPTGEYLASG-SLDKSMHIWSLKEGKIVKTYT-GNGGIFEVCWNKEGDKIAACFANHTVCVLD  560 (563)
Q Consensus       489 ~h~~~i~~l~~spdg~~lasg-s~dg~v~iw~~~~~~~~~~~~-~~~~i~~l~w~~~g~~la~~~~~~~v~v~~  560 (563)
                      ..-..-+.|+|+|++..|..+ +..+.|..+++.......... .......++...+ ..+.+-..++.|..+|
T Consensus       163 ~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~~-~lywtd~~~~~V~~~~  235 (318)
T 3sov_A          163 SEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILACN  235 (318)
T ss_dssp             SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEETT-EEEEEETTTTEEEEEE
T ss_pred             CCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeCC-EEEEEecCCCeEEEEE
Confidence            222345899999976666544 456789999986433222222 2234567776532 3333444556666665

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=97.59  E-value=0.11  Score=54.92  Aligned_cols=221  Identities=10%  Similarity=0.004  Sum_probs=136.3

Q ss_pred             CCCeEEEEEcCCcee-Eeec-cCCCCEEEEEeCCCCCEEEEe-eCCCcEEEEECCCCceeEEeee--cccCeEEEecCCC
Q 008496          294 YDGQARIWSTNGDLK-CTLS-KHKGPIFSLKWNKKGDYLLTG-SCDKTAIVWDVKTEEWKQQFEF--HSGPTLDVDWRNN  368 (563)
Q Consensus       294 ~dg~i~vw~~~~~~~-~~~~-~h~~~V~~l~~~~~~~~l~s~-s~D~~v~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~  368 (563)
                      ....|+..++++... ..+. ..-..+.+|+|++.+..|+.+ ..++.|..+++........+..  ....-+.++|...
T Consensus        13 ~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~   92 (628)
T 4a0p_A           13 RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGK   92 (628)
T ss_dssp             ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTT
T ss_pred             eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCC
Confidence            456788888775432 2221 123467899999977666544 4578899998876544333322  2234578899888


Q ss_pred             ceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEe--CCCcEEEEeCCCCceeeeecccCCCEEEE
Q 008496          369 VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCS--DDVTAKIWNMKQDKYVHDLREHSKEIYTI  446 (563)
Q Consensus       369 ~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s--~dg~i~iwd~~~~~~~~~~~~~~~~i~~~  446 (563)
                      ..+++-...+.|.+.++........+...-.....|+++|....|....  ..+.|...++....... +...-.....|
T Consensus        93 ~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~-l~~~~~~P~Gl  171 (628)
T 4a0p_A           93 NLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTT-LVPNVGRANGL  171 (628)
T ss_dssp             EEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEE-EECSCSSEEEE
T ss_pred             EEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEE-EECCCCCcceE
Confidence            8888888889999999876543333333344578999998655544443  25677777776544322 22233456788


Q ss_pred             EEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCee
Q 008496          447 RWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKI  525 (563)
Q Consensus       447 ~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~  525 (563)
                      ++.+.+.        .+..+-...+.|...|+..... ..+.........|++.. +..+.+-...+.|...|..+|+.
T Consensus       172 alD~~~~--------~LY~aD~~~~~I~~~d~dG~~~-~v~~~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~~  240 (628)
T 4a0p_A          172 TIDYAKR--------RLYWTDLDTNLIESSNMLGLNR-EVIADDLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQN  240 (628)
T ss_dssp             EEETTTT--------EEEEEETTTTEEEEEETTSCSC-EEEEECCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCS
T ss_pred             EEccccC--------EEEEEECCCCEEEEEcCCCCce-EEeeccCCCceEEEEEC-CEEEEecCCCCEEEEEECCCCCc
Confidence            8887543        2445556678899998864332 22222223346777765 44445545578899888777653

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=97.57  E-value=0.046  Score=50.19  Aligned_cols=196  Identities=12%  Similarity=0.162  Sum_probs=117.1

Q ss_pred             ecCCCCceEEEEECCCCCEEE-EeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEE
Q 008496          211 LEGHTSEVCACAWSPAGSLLA-SGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLL  289 (563)
Q Consensus       211 l~~h~~~V~~~~~sp~~~~la-tgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l  289 (563)
                      +.|-...+..++|+|++..|+ ....++.|...|.. +..             ++...-   ....+.-.+++.+++.++
T Consensus        22 l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v-------------~~~i~l---~g~~D~EGIa~~~~g~~~   84 (255)
T 3qqz_A           22 IAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDL-------------IRTIPL---DFVKDLETIEYIGDNQFV   84 (255)
T ss_dssp             CTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCE-------------EEEEEC---SSCSSEEEEEECSTTEEE
T ss_pred             CCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCE-------------EEEEec---CCCCChHHeEEeCCCEEE
Confidence            445556799999999866555 45567777777764 321             111110   112567788899998877


Q ss_pred             EEEeCCCeEEEEEcCCce----eEee--c----cCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECC---CCceeEEee--
Q 008496          290 ATGSYDGQARIWSTNGDL----KCTL--S----KHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVK---TEEWKQQFE--  354 (563)
Q Consensus       290 ~sg~~dg~i~vw~~~~~~----~~~~--~----~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~---~~~~~~~~~--  354 (563)
                      ++.-.++.+.+++.....    ....  .    .......+|+|+|.++.|+++.......+|...   .........  
T Consensus        85 vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~  164 (255)
T 3qqz_A           85 ISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDK  164 (255)
T ss_dssp             EEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECH
T ss_pred             EEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecch
Confidence            776667788888754321    1111  1    133456899999999888777665554555443   111111111  


Q ss_pred             -------ecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeec---CCC------cceeEEEECCCCCEEEEEeC
Q 008496          355 -------FHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFA---GHQ------GEVNCVKWDPTGSLLASCSD  418 (563)
Q Consensus       355 -------~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~---~h~------~~i~~~~~~~~~~~las~s~  418 (563)
                             ......+.++...+..++.+.....+..++.... ++..+.   +..      .....|+|+++|++.++ |+
T Consensus       165 ~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~-~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE  242 (255)
T 3qqz_A          165 ALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGE-VIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SE  242 (255)
T ss_dssp             HHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTCC-EEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ET
T ss_pred             hhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCC-EEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cC
Confidence                   1112344555566667788888888888887643 443332   211      14578999999997665 66


Q ss_pred             CCcEEEE
Q 008496          419 DVTAKIW  425 (563)
Q Consensus       419 dg~i~iw  425 (563)
                      -..+..+
T Consensus       243 ~n~~y~f  249 (255)
T 3qqz_A          243 PNRFYRF  249 (255)
T ss_dssp             TTEEEEE
T ss_pred             CceEEEE
Confidence            6554444

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=97.57  E-value=0.042  Score=53.52  Aligned_cols=60  Identities=12%  Similarity=0.131  Sum_probs=41.2

Q ss_pred             CCEEEEEEc-------CCCCEEEEEeCCCcEEEEecCCC-eeE--EEEe-c-CCCEEEEEEcCCCCEEEEEE
Q 008496          492 EPVYSLAFS-------PTGEYLASGSLDKSMHIWSLKEG-KIV--KTYT-G-NGGIFEVCWNKEGDKIAACF  551 (563)
Q Consensus       492 ~~i~~l~~s-------pdg~~lasgs~dg~v~iw~~~~~-~~~--~~~~-~-~~~i~~l~w~~~g~~la~~~  551 (563)
                      .....++|.       .+|.++++.-..+.|...++... +..  ..+- . ...+.++++.|||...++..
T Consensus       259 ~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~  330 (354)
T 3a9g_A          259 WAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTS  330 (354)
T ss_dssp             CCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred             cCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence            356788883       56777777666778888888753 332  2332 2 35689999999998766664

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.56  E-value=0.085  Score=57.10  Aligned_cols=215  Identities=11%  Similarity=0.006  Sum_probs=123.2

Q ss_pred             CCCcEEEEECCCCceeEEeeecccCe--EEEecCCCceEEEEeCCCeEEEEEcCCC----cceeeecCCCcceeEEEECC
Q 008496          335 CDKTAIVWDVKTEEWKQQFEFHSGPT--LDVDWRNNVSFATSSTDNMIYVCKIGEN----RPIKTFAGHQGEVNCVKWDP  408 (563)
Q Consensus       335 ~D~~v~iwd~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~d~~i~~~~~~~~----~~~~~~~~h~~~i~~~~~~~  408 (563)
                      ....|+..++........... ...+  +++++..+..|++-...+.|+.+++...    .....+.........|++++
T Consensus       402 n~~~Ir~i~l~~~~~~~l~~~-~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~  480 (791)
T 3m0c_C          402 NRHEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDW  480 (791)
T ss_dssp             CBSSEEEECTTSCCCEEEECS-CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEET
T ss_pred             cccceeEeeccCCcceeeecC-CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeee
Confidence            345677777766554433322 2223  3445556667777777788888887642    22233333344567899988


Q ss_pred             CC-CEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeC-CCeEEEEeCCCCeEEEE
Q 008496          409 TG-SLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASF-DSTVKLWDVELGKLLYS  486 (563)
Q Consensus       409 ~~-~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~-dg~i~iwd~~~~~~~~~  486 (563)
                      .+ +++++-+..+.|.+.++........+.........|++.|...        .++.+-.. .+.|...++........
T Consensus       481 ~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g--------~LYwtD~g~~~~I~~~~~dG~~~~~l  552 (791)
T 3m0c_C          481 IHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHG--------FMYWTDWGTPAKIKKGGLNGVDIYSL  552 (791)
T ss_dssp             TTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTT--------EEEEEECSSSCEEEEEETTSCCEEEE
T ss_pred             cCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCC--------CEEEecCCCCCeEEEEecCCCceEEE
Confidence            76 4556666788999999876543333333334567888887532        23333322 36788888764333333


Q ss_pred             ecCCCCCEEEEEEcCCCCEEEEEe-CCCcEEEEecCCCeeEEEEecC---CCEEEEEEcCCCCEEEEE-ECCCeEEEEE
Q 008496          487 LNGHREPVYSLAFSPTGEYLASGS-LDKSMHIWSLKEGKIVKTYTGN---GGIFEVCWNKEGDKIAAC-FANHTVCVLD  560 (563)
Q Consensus       487 ~~~h~~~i~~l~~spdg~~lasgs-~dg~v~iw~~~~~~~~~~~~~~---~~i~~l~w~~~g~~la~~-~~~~~v~v~~  560 (563)
                      +...-...+.|++++.+..|..+. ..+.|..+++............   ...+.|+..  +++|..+ ..++.|..+|
T Consensus       553 v~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~--~~~lYwtD~~~~~I~~~d  629 (791)
T 3m0c_C          553 VTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSAN  629 (791)
T ss_dssp             ECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEE
T ss_pred             EeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEe--CCEEEEEECCCCEEEEEe
Confidence            333334578999998776666554 4568999998654433333321   234566653  3344444 3455665554

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=97.54  E-value=0.2  Score=56.71  Aligned_cols=321  Identities=15%  Similarity=0.168  Sum_probs=164.3

Q ss_pred             CCceEEEEECCC------CCEEEEeeC-CCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCC
Q 008496          215 TSEVCACAWSPA------GSLLASGSG-DSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT  287 (563)
Q Consensus       215 ~~~V~~~~~sp~------~~~latgs~-D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~  287 (563)
                      ..+|.|+++.|.      +.++|.|.. |++++|+.+.+-..           .....+....  ....|.-+.+ ....
T Consensus       553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~-----------~~~~~L~~~~--~p~si~l~~~-~~~~  618 (1158)
T 3ei3_A          553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFEL-----------LHKEMLGGEI--IPRSILMTTF-ESSH  618 (1158)
T ss_dssp             SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCE-----------EEEEECCSSC--CEEEEEEEEE-TTEE
T ss_pred             CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCe-----------EEEEECCCCC--CCcEEEEEEe-CCCc
Confidence            357999999874      368999986 99999999974221           1111111100  1122444444 2346


Q ss_pred             EEEEEeCCCeEEEEEcC---CceeE---eeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeE
Q 008496          288 LLATGSYDGQARIWSTN---GDLKC---TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTL  361 (563)
Q Consensus       288 ~l~sg~~dg~i~vw~~~---~~~~~---~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~  361 (563)
                      +|..|-.||.+.-+..+   |.+..   .+-+ ..|+.=..+...|..-+-+..++...++--+ +.+.- -.....++.
T Consensus       619 ~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG-~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~-~~l~~-s~l~~~~v~  695 (1158)
T 3ei3_A          619 YLLCALGDGALFYFGLNIETGLLSDRKKVTLG-TQPTVLRTFRSLSTTNVFACSDRPTVIYSSN-HKLVF-SNVNLKEVN  695 (1158)
T ss_dssp             EEEEEETTSEEEEEEECTTTCCEEEEEEEECC-SSCCEEEEEESSSCEEEEEESSSCEEEEESS-SSEEE-EEBSSSCCC
T ss_pred             EEEEEeCCCeEEEEEEcCCCCccccceeEEcC-CCceEEEEEeeCCceeEEEECCCCEEEEEcC-CceEE-eccChHHhc
Confidence            88899999988666543   33322   2223 3355444444444443333345555555433 22111 111111221


Q ss_pred             EE-ecCC---CceEEEEeCCCeEEEEEcCCCc--ceeeecCCCcceeEEEECCCCCEEEEEeCC----------------
Q 008496          362 DV-DWRN---NVSFATSSTDNMIYVCKIGENR--PIKTFAGHQGEVNCVKWDPTGSLLASCSDD----------------  419 (563)
Q Consensus       362 ~~-~~~~---~~~~~~~~~d~~i~~~~~~~~~--~~~~~~~h~~~i~~~~~~~~~~~las~s~d----------------  419 (563)
                      .+ .|..   ...++... ++.++++.+....  +++.+. -...+..++++|..+.++.+..+                
T Consensus       696 ~~~~F~se~~~~g~v~~~-~~~LrI~~i~~~~~~~~~~ip-L~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  773 (1158)
T 3ei3_A          696 YMCPLNSDGYPDSLALAN-NSTLTIGTIDEIQKLHIRTVP-LYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPS  773 (1158)
T ss_dssp             EEEEECCSSSTTEEEEEC-SSCEEEEEECCSSSEEEEEEE-CSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCC
T ss_pred             eEeccCcccCCCcEEEEc-CCceEEEEecccCCeeEEEEe-CCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhh
Confidence            22 2221   23455433 4558888775432  233332 12356778888877765443311                


Q ss_pred             ---------------------------------CcEEEEeCCCCceeeeecc-cCCCEEEEEEccCCCCCCCCCCcEEEE
Q 008496          420 ---------------------------------VTAKIWNMKQDKYVHDLRE-HSKEIYTIRWSPTGSGTNNPNQQLILA  465 (563)
Q Consensus       420 ---------------------------------g~i~iwd~~~~~~~~~~~~-~~~~i~~~~~~p~~~~~~~~~~~~~l~  465 (563)
                                                       +.|++.|..+.+.+..+.- ....+.+++.-.-..   .+  ..+++
T Consensus       774 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~---~~--~~~lv  848 (1158)
T 3ei3_A          774 ASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGK---DP--NTYFI  848 (1158)
T ss_dssp             HHHHCSEEEECCCCCC----------CCCEEEEEEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTT---CC--CCEEE
T ss_pred             hhhhhhhhcccccccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEcc---CC--CEEEE
Confidence                                             2356666666665544331 122344444322111   11  12555


Q ss_pred             EEe----------CCCeEEEEeCCCCeEEEEe-cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEE-EEecCC
Q 008496          466 SAS----------FDSTVKLWDVELGKLLYSL-NGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVK-TYTGNG  533 (563)
Q Consensus       466 s~s----------~dg~i~iwd~~~~~~~~~~-~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~-~~~~~~  533 (563)
                      .|.          ..|.|.++++..++..... ....++|++++-- +|++|| |- ..+|++|++...+.++ ......
T Consensus       849 VGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~-~g~Lla-~i-g~~l~vy~l~~~~~L~~~~~~~~  925 (1158)
T 3ei3_A          849 VGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEF-NGKLLA-SI-NSTVRLYEWTTEKELRTECNHYN  925 (1158)
T ss_dssp             EEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSCEEEEEEE-TTEEEE-EE-TTEEEEEEECTTSCEEEEEEECC
T ss_pred             EEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCcCEEEeee-CCEEEE-Ec-CCEEEEEECCCCceEEEEeeccc
Confidence            554          3478999998755432211 2246789988632 454444 33 4689999998765444 111111


Q ss_pred             CEEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496          534 GIFEVCWNKEGDKIAACFANHTVCVLDFR  562 (563)
Q Consensus       534 ~i~~l~w~~~g~~la~~~~~~~v~v~~~~  562 (563)
                      .|..+.....|+++++|..-..+.++-++
T Consensus       926 ~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~  954 (1158)
T 3ei3_A          926 NIMALYLKTKGDFILVGDLMRSVLLLAYK  954 (1158)
T ss_dssp             CSCEEEEEEETTEEEEEESSBCEEEEEEE
T ss_pred             cEEEEEEeccCCEEEEEEhhheEEEEEEE
Confidence            22222233357788888877777777655

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=97.48  E-value=0.0033  Score=63.33  Aligned_cols=152  Identities=11%  Similarity=0.191  Sum_probs=93.4

Q ss_pred             ceeEEEECC-CCCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCC----eEE
Q 008496          400 EVNCVKWDP-TGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDS----TVK  474 (563)
Q Consensus       400 ~i~~~~~~~-~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg----~i~  474 (563)
                      ....++++| ++..|..+...+.|+.+|+..+.... +.........++|++++.        .++++...++    .+.
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~-~~~~~~~P~~ia~d~~G~--------~lyvad~~~~~~~~~v~  208 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVST-VYSGLSKVRTICWTHEAD--------SMIITNDQNNNDRPNNY  208 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEE-EECCCSCEEEEEECTTSS--------EEEEEECCSCTTSEEEE
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEE-EecCCCCcceEEEeCCCC--------EEEEEeCCCCcccceEE
Confidence            456889998 34445444444889999988765433 333445578899988764        2444443322    233


Q ss_pred             EEeCCCCeEE--EEecCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEecCCCeeEEEEec--CCCEEEEEEcCCCCEEEE
Q 008496          475 LWDVELGKLL--YSLNGHREPVYSLAFSP-TGEYLASGSLDKSMHIWSLKEGKIVKTYTG--NGGIFEVCWNKEGDKIAA  549 (563)
Q Consensus       475 iwd~~~~~~~--~~~~~h~~~i~~l~~sp-dg~~lasgs~dg~v~iw~~~~~~~~~~~~~--~~~i~~l~w~~~g~~la~  549 (563)
                      +.+.. +...  ..+... .....++++| +|.++++-..+++|..|+...+........  ......++|+|+|++|.+
T Consensus       209 ~~~~~-g~~~~~~~l~~~-~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv  286 (430)
T 3tc9_A          209 ILTRE-SGFKVITELTKG-QNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYI  286 (430)
T ss_dssp             EEEGG-GTSCSEEEEEEC-SSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEE
T ss_pred             EEeCC-CceeeeeeeccC-CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEE
Confidence            33322 2111  122111 2346788999 677777766788999999987765333222  234689999999996555


Q ss_pred             E-ECCCeEEEEEee
Q 008496          550 C-FANHTVCVLDFR  562 (563)
Q Consensus       550 ~-~~~~~v~v~~~~  562 (563)
                      + ..++.|.+++..
T Consensus       287 ~d~~~~~I~~~~~d  300 (430)
T 3tc9_A          287 VVVNQHYILRSDYD  300 (430)
T ss_dssp             EETTTTEEEEEEEE
T ss_pred             EECCCCEEEEEeCC
Confidence            5 567788887753

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=97.45  E-value=0.04  Score=58.10  Aligned_cols=223  Identities=9%  Similarity=-0.009  Sum_probs=125.4

Q ss_pred             CCeEEEEEcCCce--eEeeccCCCCEEEEEeCCCCCEEEEee-CCCcEEEEECCCCce-eEEeee--cccCeEEEecCCC
Q 008496          295 DGQARIWSTNGDL--KCTLSKHKGPIFSLKWNKKGDYLLTGS-CDKTAIVWDVKTEEW-KQQFEF--HSGPTLDVDWRNN  368 (563)
Q Consensus       295 dg~i~vw~~~~~~--~~~~~~h~~~V~~l~~~~~~~~l~s~s-~D~~v~iwd~~~~~~-~~~~~~--~~~~~~~~~~~~~  368 (563)
                      ...|+..++++..  ...+...-..+.+++|++.+..|+-+. ..+.|..+++..... ...+..  ....-+.++|...
T Consensus        17 ~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~   96 (619)
T 3s94_A           17 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGE   96 (619)
T ss_dssp             SSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTT
T ss_pred             cccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCC
Confidence            4567777776542  222223344578999999777776554 457788888865432 112221  2223577889888


Q ss_pred             ceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeC--CCcEEEEeCCCCceeeeecccCCCEEEE
Q 008496          369 VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD--DVTAKIWNMKQDKYVHDLREHSKEIYTI  446 (563)
Q Consensus       369 ~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~--dg~i~iwd~~~~~~~~~~~~~~~~i~~~  446 (563)
                      ..+++-...+.|.+.+.........+...-.....|+++|.+..|.....  .+.|...++............-.....|
T Consensus        97 ~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Gl  176 (619)
T 3s94_A           97 KLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGL  176 (619)
T ss_dssp             EEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEE
T ss_pred             EEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEE
Confidence            88888888899999998765433333334455778999997555444432  3566666665443322222223445778


Q ss_pred             EEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeE
Q 008496          447 RWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIV  526 (563)
Q Consensus       447 ~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~  526 (563)
                      ++.+.+.        .+..+-...+.|...|+..........+.......|++..+ ..+.+-...+.|...|..+|+..
T Consensus       177 ald~~~~--------~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~~  247 (619)
T 3s94_A          177 TLDYEEQ--------KLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILACNKYTGEGL  247 (619)
T ss_dssp             EEETTTT--------EEEEEETTTCCEEEESSSCCEEC---------CCCEEESSS-EEEEECTTTCSEEEEESSSCCCC
T ss_pred             EEEccCC--------EEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC-EEEEecCCCCEEEEEECCCCccc
Confidence            8877542        24445556678888888643322222211112246777665 44444445678999998777543

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=97.36  E-value=0.12  Score=50.12  Aligned_cols=65  Identities=15%  Similarity=0.135  Sum_probs=43.2

Q ss_pred             CCEEEEEEcC-------CCCEEEEEeCCCcEEEEecCCCeeEEEEe---c-CCCEEEEEEcCCCCEEEEEE-CCCeE
Q 008496          492 EPVYSLAFSP-------TGEYLASGSLDKSMHIWSLKEGKIVKTYT---G-NGGIFEVCWNKEGDKIAACF-ANHTV  556 (563)
Q Consensus       492 ~~i~~l~~sp-------dg~~lasgs~dg~v~iw~~~~~~~~~~~~---~-~~~i~~l~w~~~g~~la~~~-~~~~v  556 (563)
                      .....++|..       +|.++++.-..+.|...++..++.+....   . ...+.++++.|||...++.. .+|.|
T Consensus       271 ~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~td~~~g~I  347 (353)
T 2g8s_A          271 PAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGYLYVLTDESSGEL  347 (353)
T ss_dssp             CCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSCEEEEECSTTEEE
T ss_pred             cCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCcEEEEEeCCCCEE
Confidence            3567788864       46777766677888888887765543321   2 34689999999998666543 34443

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.24  E-value=0.22  Score=50.40  Aligned_cols=114  Identities=8%  Similarity=0.050  Sum_probs=64.1

Q ss_pred             ceEEEEECCC--CCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEE-------CCCCC
Q 008496          217 EVCACAWSPA--GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDW-------NGEGT  287 (563)
Q Consensus       217 ~V~~~~~sp~--~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~-------s~~g~  287 (563)
                      ....++|+|.  ++++++-...+.|++.|+.++..           ..+.   ............++|       +++|.
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v-----------~~l~---~~~~~~~~~p~~ia~~~~~~~~d~~G~  205 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRML-----------SSPL---NINTIPTNRIRSIAFNKKIEGYADEAE  205 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEE-----------EEEE---CCTTSSCSBEEEEEECCCBTTTBCTTC
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEE-----------EEEE---ccCccccCCCcEEEEeecccccCCCCC
Confidence            3568899993  44555544446677777665321           1111   110112235788999       99999


Q ss_pred             EEEEEeCCC-------eEEEEEcCC--cee-----EeeccCCCCEEEEEeCCCCCE-EEEeeCCCcEEEEECC
Q 008496          288 LLATGSYDG-------QARIWSTNG--DLK-----CTLSKHKGPIFSLKWNKKGDY-LLTGSCDKTAIVWDVK  345 (563)
Q Consensus       288 ~l~sg~~dg-------~i~vw~~~~--~~~-----~~~~~h~~~V~~l~~~~~~~~-l~s~s~D~~v~iwd~~  345 (563)
                      .|+++...+       .+.+.+...  ...     ..+..... ..+++.+|++.+ +++-..++.|..+|+.
T Consensus       206 ~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~~-p~giavdp~~g~LYvtd~~~g~V~r~d~~  277 (496)
T 3kya_A          206 YMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAYKQ-CNGATIHPINGELYFNSYEKGQVFRLDLV  277 (496)
T ss_dssp             EEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEESC-CCCEEECTTTCCEEEEETTTTEEEEECHH
T ss_pred             EEEEEeCCCCCcccCceEEEEecCCCCceeecccceeeccCCC-ceEEEEcCCCCeEEEEECCCCEEEEEecc
Confidence            666666554       255554332  322     12222222 246778885444 4555567788888886

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.17  E-value=0.037  Score=52.54  Aligned_cols=153  Identities=12%  Similarity=0.178  Sum_probs=95.8

Q ss_pred             EEecCC-CceEEEE-eCCCeEEEEEcCCCccee-eecC----CCc--ceeEEEE---CCCCCEEEEEe------------
Q 008496          362 DVDWRN-NVSFATS-STDNMIYVCKIGENRPIK-TFAG----HQG--EVNCVKW---DPTGSLLASCS------------  417 (563)
Q Consensus       362 ~~~~~~-~~~~~~~-~~d~~i~~~~~~~~~~~~-~~~~----h~~--~i~~~~~---~~~~~~las~s------------  417 (563)
                      ++.|.. ...|..+ -..+.|..|+...+.... .+.+    ...  .+..|.|   .|+++++++..            
T Consensus        17 ~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~   96 (334)
T 2p9w_A           17 DTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSS   96 (334)
T ss_dssp             CEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCCS
T ss_pred             CccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccccccc
Confidence            455643 3444444 468899999886443222 2332    111  3578999   68888887543            


Q ss_pred             -CCCcEEEEeCC---CCceeeeec--ccC-----------CCEEEEEEccCCCCCCCCCCcEEEEEEeCC-CeEEEEeCC
Q 008496          418 -DDVTAKIWNMK---QDKYVHDLR--EHS-----------KEIYTIRWSPTGSGTNNPNQQLILASASFD-STVKLWDVE  479 (563)
Q Consensus       418 -~dg~i~iwd~~---~~~~~~~~~--~~~-----------~~i~~~~~~p~~~~~~~~~~~~~l~s~s~d-g~i~iwd~~  479 (563)
                       .+..+..||+.   +++.+....  ...           .....++..++|.         ..++++.- +.|...+..
T Consensus        97 ~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~Gn---------aYVt~s~~~~~I~rV~pd  167 (334)
T 2p9w_A           97 HGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGN---------SYVAFALGMPAIARVSAD  167 (334)
T ss_dssp             SSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSC---------EEEEEEESSCEEEEECTT
T ss_pred             CCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCC---------EEEeCCCCCCeEEEEeCC
Confidence             15778999998   676543322  211           2367788888775         45667777 777777765


Q ss_pred             CCeEE-EEec----CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 008496          480 LGKLL-YSLN----GHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEG  523 (563)
Q Consensus       480 ~~~~~-~~~~----~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~  523 (563)
                      -.... +-+.    ......+.|+++|||+.|++....|.|..+|+.+-
T Consensus       168 G~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~p  216 (334)
T 2p9w_A          168 GKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKP  216 (334)
T ss_dssp             SCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSS
T ss_pred             CCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCC
Confidence            32222 1111    11223578999999998888777999999998743

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.13  E-value=0.0021  Score=68.97  Aligned_cols=215  Identities=11%  Similarity=-0.042  Sum_probs=114.2

Q ss_pred             CCeEEEEECCCCCEEEEE-eCCCeEEEEEcCC----ceeE-eeccCCCCEEEEEeCCCCCEE-EEeeCCCcEEEEECCCC
Q 008496          275 KDVTTLDWNGEGTLLATG-SYDGQARIWSTNG----DLKC-TLSKHKGPIFSLKWNKKGDYL-LTGSCDKTAIVWDVKTE  347 (563)
Q Consensus       275 ~~V~~l~~s~~g~~l~sg-~~dg~i~vw~~~~----~~~~-~~~~h~~~V~~l~~~~~~~~l-~s~s~D~~v~iwd~~~~  347 (563)
                      ..+..|+|++.+..|..+ ...+.|+.+++.+    .... .+........+|++.+.+..| ++-...+.|.+.++...
T Consensus       406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~  485 (699)
T 1n7d_A          406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV  485 (699)
T ss_dssp             TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred             cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence            345678999866655554 4557888888875    2211 121111234567777554444 44455678999998765


Q ss_pred             ceeEEeeec--ccCeEEEecCCCceEEEEeCC-CeEEEEEcCCCcceeeecCCCcceeEEEECCCC-CEEEEEeCCCcEE
Q 008496          348 EWKQQFEFH--SGPTLDVDWRNNVSFATSSTD-NMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTG-SLLASCSDDVTAK  423 (563)
Q Consensus       348 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~d-~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~-~~las~s~dg~i~  423 (563)
                      .....+...  ...-+.+++.....|++-... +.|++.++........+...-...+.|+|+|++ .++++-+..+.|.
T Consensus       486 ~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~  565 (699)
T 1n7d_A          486 KRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSIS  565 (699)
T ss_dssp             CEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEE
T ss_pred             ceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEE
Confidence            433322211  112233444444445444333 667766654332222222222346789999875 4555556677899


Q ss_pred             EEeCCCCceeeeecc--cCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEE
Q 008496          424 IWNMKQDKYVHDLRE--HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAF  499 (563)
Q Consensus       424 iwd~~~~~~~~~~~~--~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~  499 (563)
                      .+++........+..  .......|++..          ..++.+....+.|..+|..+|+.+..+.......+.|++
T Consensus       566 ~~d~dG~~~~~~~~~~~~~~~P~glavd~----------~~lywtd~~~~~V~~~d~~~G~~~~~i~~~~~~P~~i~v  633 (699)
T 1n7d_A          566 SIDVNGGNRKTILEDEKRLAHPFSLAVFE----------DKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVL  633 (699)
T ss_dssp             EECSSSSCCEEECCCSSSCSSCCCCEEET----------TEEEEECSTTTCEEEEETTTEEEEECCCTTCSSCCCCCB
T ss_pred             EEccCCCceEEEEecCCcCCCceEeEEEC----------CEEEEEeCCCCeEEEEEccCCCceEEeecCCCCCcEEEE
Confidence            999865332211111  011112222211          135566667788999998888877766432222344443

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=96.95  E-value=0.32  Score=47.17  Aligned_cols=101  Identities=13%  Similarity=0.141  Sum_probs=57.5

Q ss_pred             CceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCC---CCEEEEE
Q 008496          216 SEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE---GTLLATG  292 (563)
Q Consensus       216 ~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~---g~~l~sg  292 (563)
                      ..-..++|.|+|+++++ ..++.|++++  ++..           ..+.... ...........|+|+|+   +..|..+
T Consensus        31 ~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~-----------~~~~~~~-v~~~g~~~p~gia~~pdf~~~g~lYv~   95 (352)
T 2ism_A           31 EVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRL-----------STYAELS-VYHRGESGLLGLALHPRFPQEPYVYAY   95 (352)
T ss_dssp             SCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEE-----------EEEEECC-CCCSTTCSEEEEEECTTTTTSCEEEEE
T ss_pred             CCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCc-----------cEeecce-EeecCCCCceeEEECCCCCCCCEEEEE
Confidence            34578999999997665 4568888887  3221           0111111 11112345789999998   4444443


Q ss_pred             -eCC-----CeEEEEEcCCc-------eeEeec-----cCCCCEEEEEeCCCCCEEEEe
Q 008496          293 -SYD-----GQARIWSTNGD-------LKCTLS-----KHKGPIFSLKWNKKGDYLLTG  333 (563)
Q Consensus       293 -~~d-----g~i~vw~~~~~-------~~~~~~-----~h~~~V~~l~~~~~~~~l~s~  333 (563)
                       ...     +.|..++..+.       +...+.     .|.  ...++|.|+|...++.
T Consensus        96 ~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~--~~~l~~~pdG~Lyv~~  152 (352)
T 2ism_A           96 RTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHS--GGRIAFGPDGMLYVTT  152 (352)
T ss_dssp             EEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCC--CCCEEECTTSCEEEEC
T ss_pred             EecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcC--CceEEECCCCCEEEEE
Confidence             332     56767776542       111122     122  2579999999766654

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=96.91  E-value=0.55  Score=49.41  Aligned_cols=318  Identities=11%  Similarity=0.045  Sum_probs=168.0

Q ss_pred             CCCceEEEEECCCC-CEEEEe-eCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEE
Q 008496          214 HTSEVCACAWSPAG-SLLASG-SGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLAT  291 (563)
Q Consensus       214 h~~~V~~~~~sp~~-~~latg-s~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~s  291 (563)
                      .-.....++++|.. .++.|- +..+.|...++.....         .  .+..       .......|++++++..|..
T Consensus       121 ~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~---------~--~l~~-------~~~~P~GlalD~~~~~LY~  182 (628)
T 4a0p_A          121 DLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSER---------T--TLVP-------NVGRANGLTIDYAKRRLYW  182 (628)
T ss_dssp             SCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC---------E--EEEC-------SCSSEEEEEEETTTTEEEE
T ss_pred             CCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCce---------E--EEEC-------CCCCcceEEEccccCEEEE
Confidence            33456899999964 444443 2245555555532210         1  1110       1245678999997666665


Q ss_pred             Ee-CCCeEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCe----------
Q 008496          292 GS-YDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPT----------  360 (563)
Q Consensus       292 g~-~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~----------  360 (563)
                      +. ..+.|...+.+|.....+........+|++.. +..+++-...+.|...|..+++....+.......          
T Consensus       183 aD~~~~~I~~~d~dG~~~~v~~~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~~~~~l~~~~~~p~~i~v~~~~~  261 (628)
T 4a0p_A          183 TDLDTNLIESSNMLGLNREVIADDLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQNRTIIQGHLDYVMDILVFHSSR  261 (628)
T ss_dssp             EETTTTEEEEEETTSCSCEEEEECCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSCEEEECSCCSCCEEEEECGGG
T ss_pred             EECCCCEEEEEcCCCCceEEeeccCCCceEEEEEC-CEEEEecCCCCEEEEEECCCCCceEEEecCCCCcceeeeeeecc
Confidence            54 56789999988754444444444456777754 3334444446788888876665333222111000          


Q ss_pred             ----------------EEEecCCCceEEEEe-----------------------CCCeEEEEEcCCCc-ceeeecC-CCc
Q 008496          361 ----------------LDVDWRNNVSFATSS-----------------------TDNMIYVCKIGENR-PIKTFAG-HQG  399 (563)
Q Consensus       361 ----------------~~~~~~~~~~~~~~~-----------------------~d~~i~~~~~~~~~-~~~~~~~-h~~  399 (563)
                                      +++.... ..+.+..                       ....|+...+.... +...+.. .-.
T Consensus       262 q~~~n~C~~~ng~C~~~C~~~~~-~~~~C~C~~g~~l~~d~~~C~~~~~~Ll~s~~~~i~~i~l~~~~~~~~~l~~~~~~  340 (628)
T 4a0p_A          262 QSGWNECASSNGHCSHLCLAVPV-GGFVCGCPAHYSLNADNRTCSAPTTFLLFSQKSAINRMVIDEQQSPDIILPIHSLR  340 (628)
T ss_dssp             SCCCCTTTTTGGGCSSEEEEETT-TEEEEECSTTCEECTTSSCEECCSSEEEEEETTEEEEECCCTTCCCCEECCCTTCS
T ss_pred             cccceEeccCCCCcchhhhcCCC-CCeeEEcCCCcEecccCCcCccccceeeeeccceEEEEecccccCceEEEEehhcC
Confidence                            1111000 1111111                       11112211111110 0001111 113


Q ss_pred             ceeEEEECCCCCEEE-EEeCCCcEEEEeCCCCceeeeecc------cCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCe
Q 008496          400 EVNCVKWDPTGSLLA-SCSDDVTAKIWNMKQDKYVHDLRE------HSKEIYTIRWSPTGSGTNNPNQQLILASASFDST  472 (563)
Q Consensus       400 ~i~~~~~~~~~~~la-s~s~dg~i~iwd~~~~~~~~~~~~------~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~  472 (563)
                      .+..++|++....|. +=...+.|+.+++........+..      .......+++.+.+.        .+..+-+..+.
T Consensus       341 ~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~--------nLY~td~~~~~  412 (628)
T 4a0p_A          341 NVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSR--------YIYWTCEATNV  412 (628)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------CCCEEEEEEETTTT--------EEEEEETTTTE
T ss_pred             CceEEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccccccccCCcceEEeeccCC--------eEEEEcCCCCE
Confidence            466899988655554 444567788888765433222222      223567788776543        35566777888


Q ss_pred             EEEEeCCCCeEEEEe-cCCCCCEEEEEEcC-CCCEEEEEeCCC--cEEEEecCCCeeEEEE-e-cCCCEEEEEEcCCCCE
Q 008496          473 VKLWDVELGKLLYSL-NGHREPVYSLAFSP-TGEYLASGSLDK--SMHIWSLKEGKIVKTY-T-GNGGIFEVCWNKEGDK  546 (563)
Q Consensus       473 i~iwd~~~~~~~~~~-~~h~~~i~~l~~sp-dg~~lasgs~dg--~v~iw~~~~~~~~~~~-~-~~~~i~~l~w~~~g~~  546 (563)
                      |.+.++. |+....+ ........+|++.| .|.++.+-....  .|...++. |.....+ . .-.....|+.++++++
T Consensus       413 I~v~~~~-G~~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~d-G~~~~~l~~~~l~~P~gla~D~~~~~  490 (628)
T 4a0p_A          413 INVTRLD-GRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALD-GTEREVLFFSGLSKPIALALDSRLGK  490 (628)
T ss_dssp             EEEEETT-SCEEEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETT-SCSCEEEECSSCSCEEEEEEETTTTE
T ss_pred             EEEEECC-CCeEEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCC-CCCcEEEEeccCCCccEEEEeCCCCE
Confidence            9999886 4444333 23334578999999 565555533332  56666654 3322222 2 2235688999999888


Q ss_pred             EEEEEC-CCeEEEEEe
Q 008496          547 IAACFA-NHTVCVLDF  561 (563)
Q Consensus       547 la~~~~-~~~v~v~~~  561 (563)
                      |..+.. .+.|..+|+
T Consensus       491 LYw~D~~~~~I~~~~~  506 (628)
T 4a0p_A          491 LFWADSDLRRIESSDL  506 (628)
T ss_dssp             EEEEETTTTEEEEEET
T ss_pred             EEEEeCCCCEEEEEeC
Confidence            877744 466776664

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=96.87  E-value=0.075  Score=51.41  Aligned_cols=155  Identities=14%  Similarity=0.098  Sum_probs=89.8

Q ss_pred             eeEEEECCCCCEEEEEe------------CCCcEEEEeCCCCc-eeeee--cc-----cCCCEEEEEEccCCCCCCCCCC
Q 008496          401 VNCVKWDPTGSLLASCS------------DDVTAKIWNMKQDK-YVHDL--RE-----HSKEIYTIRWSPTGSGTNNPNQ  460 (563)
Q Consensus       401 i~~~~~~~~~~~las~s------------~dg~i~iwd~~~~~-~~~~~--~~-----~~~~i~~~~~~p~~~~~~~~~~  460 (563)
                      .-.+...|+|..+++++            .+|.|.++|.++.. ....+  .+     ..-....+.+.++..     ..
T Consensus        52 ~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~d-----g~  126 (355)
T 3sre_A           52 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDD-----NT  126 (355)
T ss_dssp             CCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTT-----CC
T ss_pred             cceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCC-----Cc
Confidence            34566788877666652            68999999987421 11122  11     122445555544311     11


Q ss_pred             cEEEEEEeC--CCeEEEEeCCC--CeE--EEEecCC-CCCEEEEEEcCCCCEEEEEeC-----------------CCcEE
Q 008496          461 QLILASASF--DSTVKLWDVEL--GKL--LYSLNGH-REPVYSLAFSPTGEYLASGSL-----------------DKSMH  516 (563)
Q Consensus       461 ~~~l~s~s~--dg~i~iwd~~~--~~~--~~~~~~h-~~~i~~l~~spdg~~lasgs~-----------------dg~v~  516 (563)
                      ..++++-..  +.+|.+|++..  +..  +..+.+. -...+.+++.++|.++++...                 .|.|.
T Consensus       127 ~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vy  206 (355)
T 3sre_A          127 VYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVT  206 (355)
T ss_dssp             EEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEE
T ss_pred             EEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEE
Confidence            123333332  56788887654  222  3334332 235789999999998887641                 24455


Q ss_pred             EEecCCCeeEEEEecCCCEEEEEEcCCCCEEEEEE-CCCeEEEEEee
Q 008496          517 IWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACF-ANHTVCVLDFR  562 (563)
Q Consensus       517 iw~~~~~~~~~~~~~~~~i~~l~w~~~g~~la~~~-~~~~v~v~~~~  562 (563)
                      -++.  +++.....+-...+.++|+|||+.|.++. ..+.|.+|+++
T Consensus       207 r~d~--~~~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~  251 (355)
T 3sre_A          207 YYSP--NDVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKH  251 (355)
T ss_dssp             EECT--TCCEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEEC
T ss_pred             EEEC--CeEEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEEC
Confidence            5554  34333333334568999999999888774 46788888874

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=96.84  E-value=0.11  Score=50.94  Aligned_cols=133  Identities=15%  Similarity=0.165  Sum_probs=83.1

Q ss_pred             CeEEEEEcCCCcceeeecCC----CcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCc------------eeeeecc---
Q 008496          378 NMIYVCKIGENRPIKTFAGH----QGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDK------------YVHDLRE---  438 (563)
Q Consensus       378 ~~i~~~~~~~~~~~~~~~~h----~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~------------~~~~~~~---  438 (563)
                      +.|+.+++......+.+.-.    -..|..+..+|+|++||..+.. .|.|-.+..+.            ....++-   
T Consensus        41 n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~-~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~  119 (452)
T 3pbp_A           41 NIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDN-EIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEE  119 (452)
T ss_dssp             TEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSS-EEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGC
T ss_pred             CEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCC-eEEEEEecCccccCcccccccccceeEEEcCCc
Confidence            45566666543334443322    2257789999999999888654 77777665221            0112221   


Q ss_pred             ---cCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC--eEEEEec---------CCCCCEEEEEEcCCCC
Q 008496          439 ---HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG--KLLYSLN---------GHREPVYSLAFSPTGE  504 (563)
Q Consensus       439 ---~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~--~~~~~~~---------~h~~~i~~l~~spdg~  504 (563)
                         ...+|..+.|+|.+..     + ..|++-..|+.||+||+...  ++. .++         .....|.+++|+++|-
T Consensus       120 ~~~~~s~I~qVlWHPl~~~-----d-s~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~l  192 (452)
T 3pbp_A          120 EVGPKSSIKKVLFHPKSYR-----D-SCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSKDGL  192 (452)
T ss_dssp             C--CCCCEEEEEECTTBGG-----G-CEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECTTSS
T ss_pred             ccCCCCceeEEEeccccCC-----C-CeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcCCCc
Confidence               2467999999998752     1 14667778999999999752  112 222         2235688999999886


Q ss_pred             EEEEEe--CCCcEEEE
Q 008496          505 YLASGS--LDKSMHIW  518 (563)
Q Consensus       505 ~lasgs--~dg~v~iw  518 (563)
                      .|...+  ..|.|+-.
T Consensus       193 TLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          193 TLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             CEEEEECTTSCEEEEE
T ss_pred             EEEEEecCCCCCEEEE
Confidence            555544  67777543

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=96.79  E-value=0.22  Score=48.20  Aligned_cols=176  Identities=15%  Similarity=0.159  Sum_probs=96.2

Q ss_pred             CCCcEEEEECCCCc-eeEEeeecc-------cCeEEEecC---CC--ceEEEEeC--CCeEEEEEcCCCc----ceeeec
Q 008496          335 CDKTAIVWDVKTEE-WKQQFEFHS-------GPTLDVDWR---NN--VSFATSST--DNMIYVCKIGENR----PIKTFA  395 (563)
Q Consensus       335 ~D~~v~iwd~~~~~-~~~~~~~~~-------~~~~~~~~~---~~--~~~~~~~~--d~~i~~~~~~~~~----~~~~~~  395 (563)
                      .+|.|.++|+.+.. ....+....       .....++..   ++  ..|++-..  +..|-++++....    .+..+.
T Consensus        81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~  160 (355)
T 3sre_A           81 KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIR  160 (355)
T ss_dssp             -CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEEC
T ss_pred             CCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccc
Confidence            68899999987321 122222211       234444431   12  23444444  4567777665432    233343


Q ss_pred             CCC-cceeEEEECCCCCEEEEEeC---C------------CcEEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCC
Q 008496          396 GHQ-GEVNCVKWDPTGSLLASCSD---D------------VTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPN  459 (563)
Q Consensus       396 ~h~-~~i~~~~~~~~~~~las~s~---d------------g~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~  459 (563)
                      +.. ...+.+.+.++|.+.++..-   |            ..=++|.+..++ +..+...-..-..++|+|++.      
T Consensus       161 g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~~-~~~~~~~l~~pNGia~spDg~------  233 (355)
T 3sre_A          161 HKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPND-VRVVAEGFDFANGINISPDGK------  233 (355)
T ss_dssp             CTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTTC-CEEEEEEESSEEEEEECTTSS------
T ss_pred             cCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECCe-EEEeecCCcccCcceECCCCC------
Confidence            322 35789999999998877641   1            122344333332 222222223457899999875      


Q ss_pred             CcEEEEEEeCCCeEEEEeCCC-CeE--EEEecCCCCCEEEEEEcC-CCCEEEEEeCC-CcEEEEec
Q 008496          460 QQLILASASFDSTVKLWDVEL-GKL--LYSLNGHREPVYSLAFSP-TGEYLASGSLD-KSMHIWSL  520 (563)
Q Consensus       460 ~~~~l~s~s~dg~i~iwd~~~-~~~--~~~~~~h~~~i~~l~~sp-dg~~lasgs~d-g~v~iw~~  520 (563)
                        .+.++-+..+.|..|++.. ++.  ...+. .....-.+++.+ +|++.+++..+ +.|..|+.
T Consensus       234 --~lYvadt~~~~I~~~~~~~~g~l~~~~~~~-~~g~PDGi~vD~e~G~lwva~~~~g~~v~~~~P  296 (355)
T 3sre_A          234 --YVYIAELLAHKIHVYEKHANWTLTPLRVLS-FDTLVDNISVDPVTGDLWVGCHPNGMRIFFYDA  296 (355)
T ss_dssp             --EEEEEEGGGTEEEEEEECTTSCEEEEEEEE-CSSEEEEEEECTTTCCEEEEEESCHHHHHSCCT
T ss_pred             --EEEEEeCCCCeEEEEEECCCCcEecCEEEe-CCCCCceEEEeCCCCcEEEEecCCceEEEEECC
Confidence              3556666788999999863 332  12232 234567899999 59988876644 23444443

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=96.56  E-value=0.66  Score=45.54  Aligned_cols=211  Identities=13%  Similarity=0.185  Sum_probs=133.6

Q ss_pred             eCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcC-CCcceeeecCCCc--
Q 008496          323 WNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIG-ENRPIKTFAGHQG--  399 (563)
Q Consensus       323 ~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~-~~~~~~~~~~h~~--  399 (563)
                      .||..+.++-=+ ..++.|+|+.+...+..+.+.. ++.=-.|.+...++.. ++..||.|++. ...|++.|..|..  
T Consensus        73 MnP~~~iiALra-g~~lQiFnle~K~klks~~~~e-~VvfWkWis~~~l~lV-T~taVyHWsi~~~s~P~kvFdR~~~L~  149 (494)
T 1bpo_A           73 MNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISLNTVALV-TDNAVYHWSMEGESQPVKMFDRHSSLA  149 (494)
T ss_dssp             ECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSS-CCCEEEEEETTEEEEE-CSSEEEEEESSSSCCCEEEEECCGGGT
T ss_pred             eCCCCcEEEEec-CCeEEEEchHHhhhhcceecCC-CceEEEecCCCeEEEE-cCCeeEEecccCCCCchhheecchhcc
Confidence            466666554433 6799999999998888877755 4555677777666554 45689999996 4578888887743  


Q ss_pred             --ceeEEEECCCCCEEEEEe-------CCCcEEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCC
Q 008496          400 --EVNCVKWDPTGSLLASCS-------DDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFD  470 (563)
Q Consensus       400 --~i~~~~~~~~~~~las~s-------~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~d  470 (563)
                        .|..-..+++.++++..+       -.|.+.+|+...+. ...+.+|......+..  +|.    +....+++-+...
T Consensus       150 ~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~-sQ~ieGhaa~F~~~~~--~g~----~~~~~lf~fa~r~  222 (494)
T 1bpo_A          150 GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASFAQFKM--EGN----AEESTLFCFAVRG  222 (494)
T ss_dssp             TCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCC-EEEECCSEEEEEEEEC--TTC----SSEEEEEEEEECS
T ss_pred             cceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccc-cchheeeeeeeEEEec--CCC----CCCceEEEEEEec
Confidence              577778899999876443       24667888876553 3456677654444332  221    1112244444443


Q ss_pred             ---CeEEEEeCCCC--------eEEEEec----CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEec-CCC
Q 008496          471 ---STVKLWDVELG--------KLLYSLN----GHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTG-NGG  534 (563)
Q Consensus       471 ---g~i~iwd~~~~--------~~~~~~~----~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~-~~~  534 (563)
                         +.++|-++...        +....+.    .-.+---++..|+.-..+..-+.-|.|++||+.+|.++-.-.- ...
T Consensus       223 ~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~  302 (494)
T 1bpo_A          223 QAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGET  302 (494)
T ss_dssp             TTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSC
T ss_pred             CCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeecccCCc
Confidence               68888887532        1111110    1112234677788777788888999999999999997755432 334


Q ss_pred             EEEEEEcCC
Q 008496          535 IFEVCWNKE  543 (563)
Q Consensus       535 i~~l~w~~~  543 (563)
                      |+--+-+..
T Consensus       303 iF~t~~~~~  311 (494)
T 1bpo_A          303 IFVTAPHEA  311 (494)
T ss_dssp             EEEEEEETT
T ss_pred             eEEecccCC
Confidence            544444333

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=96.47  E-value=0.2  Score=47.10  Aligned_cols=223  Identities=11%  Similarity=0.124  Sum_probs=109.2

Q ss_pred             CCCEEEEEe-CC-----CeEEEEEcCCceeEeeccC---CCCEEEEEeCCCCCEEEEeeCC-----CcEEEEECCCCc--
Q 008496          285 EGTLLATGS-YD-----GQARIWSTNGDLKCTLSKH---KGPIFSLKWNKKGDYLLTGSCD-----KTAIVWDVKTEE--  348 (563)
Q Consensus       285 ~g~~l~sg~-~d-----g~i~vw~~~~~~~~~~~~h---~~~V~~l~~~~~~~~l~s~s~D-----~~v~iwd~~~~~--  348 (563)
                      ++.+++.|+ .+     ..+.+||.....-..+...   ......+.  .++..++.|+.+     ..+.+||+.+..  
T Consensus        14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~   91 (301)
T 2vpj_A           14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVS--LHDRIYVIGGYDGRSRLSSVECLDYTADEDG   91 (301)
T ss_dssp             CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTCCTTC
T ss_pred             CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEE--ECCEEEEEcCCCCCccCceEEEEECCCCCCC
Confidence            345666666 33     3677888765433332211   11111222  245666677654     468999998887  


Q ss_pred             -eeEEeeecccC-eEEEecCCCceEEEEeCC-----CeEEEEEcCCCcc--eeeecCCCcceeEEEECCCCCEEEEEeCC
Q 008496          349 -WKQQFEFHSGP-TLDVDWRNNVSFATSSTD-----NMIYVCKIGENRP--IKTFAGHQGEVNCVKWDPTGSLLASCSDD  419 (563)
Q Consensus       349 -~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d-----~~i~~~~~~~~~~--~~~~~~h~~~i~~~~~~~~~~~las~s~d  419 (563)
                       |...-...... ...+...++..++.++.+     ..+.+++..+..-  +..+........++.+  ++++++.|+.+
T Consensus        92 ~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~  169 (301)
T 2vpj_A           92 VWYSVAPMNVRRGLAGATTLGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA--SGVIYCLGGYD  169 (301)
T ss_dssp             CCEEECCCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE--TTEEEEECCBC
T ss_pred             eeEECCCCCCCccceeEEEECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE--CCEEEEECCCC
Confidence             76543221111 111122245555655533     3577777765431  1112111111222223  67777777754


Q ss_pred             -----CcEEEEeCCCCceeee--ecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCC-----CeEEEEeCCCCeEEEE-
Q 008496          420 -----VTAKIWNMKQDKYVHD--LREHSKEIYTIRWSPTGSGTNNPNQQLILASASFD-----STVKLWDVELGKLLYS-  486 (563)
Q Consensus       420 -----g~i~iwd~~~~~~~~~--~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~d-----g~i~iwd~~~~~~~~~-  486 (563)
                           ..+.+||..+......  +.........+.+  +        + .+++.|+.+     ..+.+||+.+.+-... 
T Consensus       170 ~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~--------~-~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~  238 (301)
T 2vpj_A          170 GLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL--N--------D-HIYVVGGFDGTAHLSSVEAYNIRTDSWTTVT  238 (301)
T ss_dssp             SSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--T--------T-EEEEECCBCSSSBCCCEEEEETTTTEEEEEC
T ss_pred             CCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE--C--------C-EEEEEeCCCCCcccceEEEEeCCCCcEEECC
Confidence                 3578888877654321  1110001111111  1        1 245556553     4688999887653221 


Q ss_pred             -ecCCCCCEEEEEEcCCCCEEEEEeCC-----CcEEEEecCCCe
Q 008496          487 -LNGHREPVYSLAFSPTGEYLASGSLD-----KSMHIWSLKEGK  524 (563)
Q Consensus       487 -~~~h~~~i~~l~~spdg~~lasgs~d-----g~v~iw~~~~~~  524 (563)
                       +.........+.+  ++++++.|+.+     ..|.+||+.+.+
T Consensus       239 ~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~  280 (301)
T 2vpj_A          239 SMTTPRCYVGATVL--RGRLYAIAGYDGNSLLSSIECYDPIIDS  280 (301)
T ss_dssp             CCSSCCBSCEEEEE--TTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred             CCCCcccceeEEEE--CCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence             1111111122333  67777777765     357888887654

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=96.06  E-value=1.1  Score=43.21  Aligned_cols=101  Identities=14%  Similarity=0.123  Sum_probs=56.4

Q ss_pred             CceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCC----CCEEEE
Q 008496          216 SEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE----GTLLAT  291 (563)
Q Consensus       216 ~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~----g~~l~s  291 (563)
                      .....++|.|+|+++++ ..++.|++++ .++.            ..+.... ...........|+++|+    +.+.++
T Consensus        29 ~~P~~ia~~pdG~l~V~-e~~g~I~~~d-~~G~------------~~~~~~~-v~~~g~~g~~gia~~pdf~~~g~lyv~   93 (354)
T 3a9g_A           29 EVPWSIAPLGGGRYLVT-ERPGRLVLIS-PSGK------------KLVASFD-VANVGEAGLLGLALHPEFPKKSWVYLY   93 (354)
T ss_dssp             SCEEEEEEEETTEEEEE-ETTTEEEEEC-SSCE------------EEEEECC-CCCSTTCSEEEEEECTTTTTSCEEEEE
T ss_pred             CCCeEEEEcCCCeEEEE-eCCCEEEEEe-CCCc------------eEeeccc-eeecCCCceeeEEeCCCCCcCCEEEEE
Confidence            44678999999986665 4568888886 2221            0111111 01111245789999997    444444


Q ss_pred             EeC---C----CeEEEEEcCCc------ee---Eeec---cCCCCEEEEEeCCCCCEEEEe
Q 008496          292 GSY---D----GQARIWSTNGD------LK---CTLS---KHKGPIFSLKWNKKGDYLLTG  333 (563)
Q Consensus       292 g~~---d----g~i~vw~~~~~------~~---~~~~---~h~~~V~~l~~~~~~~~l~s~  333 (563)
                      -+.   +    ..|..|+..+.      ..   ..+.   .|.  ...|.|.|+|...++.
T Consensus        94 ~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~--~~~l~~~pDG~Lyvt~  152 (354)
T 3a9g_A           94 ASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHN--GGRIRFGPDGMLYITT  152 (354)
T ss_dssp             EEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCC--CCCEEECTTSCEEEEC
T ss_pred             EeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcC--CceEEECCCCcEEEEE
Confidence            332   2    45666665543      11   1122   232  3568999999866664

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=95.92  E-value=0.57  Score=43.98  Aligned_cols=222  Identities=15%  Similarity=0.160  Sum_probs=105.5

Q ss_pred             CCEEEEEeCC----CeEEEEEcCCceeEeeccCCC---CEEEEEeCCCCCEEEEeeCC-----CcEEEEECCCCceeEEe
Q 008496          286 GTLLATGSYD----GQARIWSTNGDLKCTLSKHKG---PIFSLKWNKKGDYLLTGSCD-----KTAIVWDVKTEEWKQQF  353 (563)
Q Consensus       286 g~~l~sg~~d----g~i~vw~~~~~~~~~~~~h~~---~V~~l~~~~~~~~l~s~s~D-----~~v~iwd~~~~~~~~~~  353 (563)
                      +.+++.|+.+    ..+.+||.....-..+.....   .-..+..  ++..++.|+.+     ..+.+||+.+.+|...-
T Consensus        16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~   93 (302)
T 2xn4_A           16 KLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYM--AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVA   93 (302)
T ss_dssp             EEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEESCBCSSSBCCCEEEEETTTTEEEEEC
T ss_pred             CEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEEE--CCEEEEEeCcCCCccccceEEECCCCCceeeCC
Confidence            3455555543    356777765543333221111   1111222  55566677654     35889999988876643


Q ss_pred             eecccC-eEEEecCCCceEEEEeCCC-----eEEEEEcCCCcc--eeeecCCCcceeEEEECCCCCEEEEEeCC------
Q 008496          354 EFHSGP-TLDVDWRNNVSFATSSTDN-----MIYVCKIGENRP--IKTFAGHQGEVNCVKWDPTGSLLASCSDD------  419 (563)
Q Consensus       354 ~~~~~~-~~~~~~~~~~~~~~~~~d~-----~i~~~~~~~~~~--~~~~~~h~~~i~~~~~~~~~~~las~s~d------  419 (563)
                      ...... -..+...++..++.++.++     .+.+++..+..=  +..+........++.+  ++++++.|+.+      
T Consensus        94 ~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~  171 (302)
T 2xn4_A           94 NMRDRRSTLGAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV--GGLLYAVGGYDVASRQC  171 (302)
T ss_dssp             CCSSCCBSCEEEEETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTTTEE
T ss_pred             CCCccccceEEEEECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE--CCEEEEEeCCCCCCCcc
Confidence            221111 1112223455556655432     466677655431  1111111111222223  56777777643      


Q ss_pred             -CcEEEEeCCCCceeee--ecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCC-----CeEEEEeCCCCeEEE--EecC
Q 008496          420 -VTAKIWNMKQDKYVHD--LREHSKEIYTIRWSPTGSGTNNPNQQLILASASFD-----STVKLWDVELGKLLY--SLNG  489 (563)
Q Consensus       420 -g~i~iwd~~~~~~~~~--~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~d-----g~i~iwd~~~~~~~~--~~~~  489 (563)
                       ..+.+||..+......  +.........+.+  +        + .+++.|+.+     ..+.+||+.+.+-..  .+..
T Consensus       172 ~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~--------~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~  240 (302)
T 2xn4_A          172 LSTVECYNATTNEWTYIAEMSTRRSGAGVGVL--N--------N-LLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNM  240 (302)
T ss_dssp             CCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--T--------T-EEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSS
T ss_pred             ccEEEEEeCCCCcEEECCCCccccccccEEEE--C--------C-EEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCC
Confidence             3477888877654321  1110001111111  1        1 245555554     368889988764322  1111


Q ss_pred             CCCCEEEEEEcCCCCEEEEEeCCC-----cEEEEecCCCe
Q 008496          490 HREPVYSLAFSPTGEYLASGSLDK-----SMHIWSLKEGK  524 (563)
Q Consensus       490 h~~~i~~l~~spdg~~lasgs~dg-----~v~iw~~~~~~  524 (563)
                      .......+.+  ++++++.|+.++     .|.+||+.+.+
T Consensus       241 ~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~  278 (302)
T 2xn4_A          241 CRRNAGVCAV--NGLLYVVGGDDGSCNLASVEYYNPTTDK  278 (302)
T ss_dssp             CCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred             ccccCeEEEE--CCEEEEECCcCCCcccccEEEEcCCCCe
Confidence            1111122222  677777777653     48888887654

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=95.79  E-value=0.55  Score=44.03  Aligned_cols=209  Identities=11%  Similarity=0.107  Sum_probs=100.6

Q ss_pred             CcEEEEECCCCceeEEeeeccc-CeEEEecCCCceEEEEeCC-----CeEEEEEcCCCc---c--eeeecCCCcceeEEE
Q 008496          337 KTAIVWDVKTEEWKQQFEFHSG-PTLDVDWRNNVSFATSSTD-----NMIYVCKIGENR---P--IKTFAGHQGEVNCVK  405 (563)
Q Consensus       337 ~~v~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~d-----~~i~~~~~~~~~---~--~~~~~~h~~~i~~~~  405 (563)
                      ..+.+||+.+.+|...-..... ....+...++..++.++.+     ..+++++..+..   -  +..+........++.
T Consensus        31 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~  110 (301)
T 2vpj_A           31 DVVEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATT  110 (301)
T ss_dssp             CCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEE
T ss_pred             eEEEEEcCCCCeEEeCCCCChhhccccEEEECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEE
Confidence            3688899988877653221111 0112222345556666543     357888876654   1  111111111122233


Q ss_pred             ECCCCCEEEEEeCCC-----cEEEEeCCCCceeee--ecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCC-----CeE
Q 008496          406 WDPTGSLLASCSDDV-----TAKIWNMKQDKYVHD--LREHSKEIYTIRWSPTGSGTNNPNQQLILASASFD-----STV  473 (563)
Q Consensus       406 ~~~~~~~las~s~dg-----~i~iwd~~~~~~~~~--~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~d-----g~i  473 (563)
                      +  ++++++.|+.++     .+.+||..+......  +......-..+.+  ++        . +++.|+.+     ..+
T Consensus       111 ~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~--------~-iyv~GG~~~~~~~~~~  177 (301)
T 2vpj_A          111 L--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA--SG--------V-IYCLGGYDGLNILNSV  177 (301)
T ss_dssp             E--TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE--TT--------E-EEEECCBCSSCBCCCE
T ss_pred             E--CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE--CC--------E-EEEECCCCCCcccceE
Confidence            3  577777776543     577888776654321  1110000111111  11        2 44455543     458


Q ss_pred             EEEeCCCCeEEEE--ecCCCCCEEEEEEcCCCCEEEEEeCC-----CcEEEEecCCCeeEEEEecC---CCEEEEEEcCC
Q 008496          474 KLWDVELGKLLYS--LNGHREPVYSLAFSPTGEYLASGSLD-----KSMHIWSLKEGKIVKTYTGN---GGIFEVCWNKE  543 (563)
Q Consensus       474 ~iwd~~~~~~~~~--~~~h~~~i~~l~~spdg~~lasgs~d-----g~v~iw~~~~~~~~~~~~~~---~~i~~l~w~~~  543 (563)
                      .+||+.+.+-...  +.........+.+  ++++++.|+.+     ..|.+||+.+.+-...-...   .....+..  +
T Consensus       178 ~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~  253 (301)
T 2vpj_A          178 EKYDPHTGHWTNVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVL--R  253 (301)
T ss_dssp             EEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--T
T ss_pred             EEEeCCCCcEEeCCCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEEE--C
Confidence            8889877643221  1111111122333  56777777764     46899999876533221111   11112222  5


Q ss_pred             CCEEEEEECC-----CeEEEEEee
Q 008496          544 GDKIAACFAN-----HTVCVLDFR  562 (563)
Q Consensus       544 g~~la~~~~~-----~~v~v~~~~  562 (563)
                      ++.+++|+.+     ..+.+||.+
T Consensus       254 ~~i~v~GG~~~~~~~~~v~~yd~~  277 (301)
T 2vpj_A          254 GRLYAIAGYDGNSLLSSIECYDPI  277 (301)
T ss_dssp             TEEEEECCBCSSSBEEEEEEEETT
T ss_pred             CEEEEEcCcCCCcccccEEEEcCC
Confidence            6666666544     346667653

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=95.69  E-value=1.5  Score=41.46  Aligned_cols=219  Identities=11%  Similarity=0.111  Sum_probs=102.2

Q ss_pred             EEEEEeCCCeEEEEEcCCceeEe--eccC-CCCEEEEEeCCCCCEEEEeeC----C-------CcEEEEECCCCceeEEe
Q 008496          288 LLATGSYDGQARIWSTNGDLKCT--LSKH-KGPIFSLKWNKKGDYLLTGSC----D-------KTAIVWDVKTEEWKQQF  353 (563)
Q Consensus       288 ~l~sg~~dg~i~vw~~~~~~~~~--~~~h-~~~V~~l~~~~~~~~l~s~s~----D-------~~v~iwd~~~~~~~~~~  353 (563)
                      +++.|+  ..+.+||.....-..  +... ...-.++. ..++..++.|+.    +       ..+.+||+.+.+|...-
T Consensus         7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~   83 (315)
T 4asc_A            7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLV-TKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMP   83 (315)
T ss_dssp             EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEE-CTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECC
T ss_pred             EEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEE-EECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECC
Confidence            344555  568888876543221  2111 11122232 346677777763    1       12778899988875532


Q ss_pred             eecccC-eEEEecCCCceEEEEeCC--------CeEEEEEcCCCc--ceeeecCCCcceeEEEECCCCCEEEEEeC-C--
Q 008496          354 EFHSGP-TLDVDWRNNVSFATSSTD--------NMIYVCKIGENR--PIKTFAGHQGEVNCVKWDPTGSLLASCSD-D--  419 (563)
Q Consensus       354 ~~~~~~-~~~~~~~~~~~~~~~~~d--------~~i~~~~~~~~~--~~~~~~~h~~~i~~~~~~~~~~~las~s~-d--  419 (563)
                      ...... -..+...++..++.++.+        +.+++++..+.+  .+..+........++.  .++++++.|+. +  
T Consensus        84 ~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~  161 (315)
T 4asc_A           84 PLPSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS--HMDLVYVIGGKGSDR  161 (315)
T ss_dssp             CBSSCEESCEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCTTS
T ss_pred             CCCcchhceeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE--ECCEEEEEeCCCCCC
Confidence            211100 011222345555555521        347777776543  1111111111112222  35677777775 2  


Q ss_pred             ---CcEEEEeCCCCceeee--ecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCC-----eEEEEeCCCCeEEEE--e
Q 008496          420 ---VTAKIWNMKQDKYVHD--LREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDS-----TVKLWDVELGKLLYS--L  487 (563)
Q Consensus       420 ---g~i~iwd~~~~~~~~~--~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg-----~i~iwd~~~~~~~~~--~  487 (563)
                         ..+.+||..+......  +.........+.+  +        +. +++.|+.++     .+.+||+.+.+=...  +
T Consensus       162 ~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~--------~~-iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~  230 (315)
T 4asc_A          162 KCLNKMCVYDPKKFEWKELAPMQTARSLFGATVH--D--------GR-IIVAAGVTDTGLTSSAEVYSITDNKWAPFEAF  230 (315)
T ss_dssp             CBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--T--------TE-EEEEEEECSSSEEEEEEEEETTTTEEEEECCC
T ss_pred             cccceEEEEeCCCCeEEECCCCCCchhceEEEEE--C--------CE-EEEEeccCCCCccceEEEEECCCCeEEECCCC
Confidence               3578888877654321  1100000111111  1        12 445555443     588888887643221  1


Q ss_pred             cCCCCCEEEEEEcCCCCEEEEEeCCC--------------cEEEEecCCCe
Q 008496          488 NGHREPVYSLAFSPTGEYLASGSLDK--------------SMHIWSLKEGK  524 (563)
Q Consensus       488 ~~h~~~i~~l~~spdg~~lasgs~dg--------------~v~iw~~~~~~  524 (563)
                      .........+.+  ++++++.|+.++              .|.+||+.+.+
T Consensus       231 p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~  279 (315)
T 4asc_A          231 PQERSSLSLVSL--VGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKK  279 (315)
T ss_dssp             SSCCBSCEEEEE--TTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTE
T ss_pred             CCcccceeEEEE--CCEEEEECCccccCcCCccccccccCcEEEecCCCCh
Confidence            111111222333  567777777642              36778877654

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=95.68  E-value=1  Score=42.33  Aligned_cols=222  Identities=9%  Similarity=0.081  Sum_probs=108.5

Q ss_pred             CCEEEEEeCC--CeEEEEEcCCceeEeecc---CCCCEEEEEeCCCCCEEEEeeCC----CcEEEEECCCCceeEEeeec
Q 008496          286 GTLLATGSYD--GQARIWSTNGDLKCTLSK---HKGPIFSLKWNKKGDYLLTGSCD----KTAIVWDVKTEEWKQQFEFH  356 (563)
Q Consensus       286 g~~l~sg~~d--g~i~vw~~~~~~~~~~~~---h~~~V~~l~~~~~~~~l~s~s~D----~~v~iwd~~~~~~~~~~~~~  356 (563)
                      +.+++.|+.+  ..+.+||.....-..+..   ....-..+.  -++..++.|+.+    ..+.+||+.+.+|...-...
T Consensus        12 ~~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p   89 (306)
T 3ii7_A           12 DYRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVF--WDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPP   89 (306)
T ss_dssp             CEEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEE--ETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCS
T ss_pred             ceEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEE--ECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCC
Confidence            3455666653  567888876543332221   111111222  245566677654    57889999998876543222


Q ss_pred             ccC-eEEEecCCCceEEEEeCC------CeEEEEEcCCCcc--eeeecCCCcceeEEEECCCCCEEEEEeC---------
Q 008496          357 SGP-TLDVDWRNNVSFATSSTD------NMIYVCKIGENRP--IKTFAGHQGEVNCVKWDPTGSLLASCSD---------  418 (563)
Q Consensus       357 ~~~-~~~~~~~~~~~~~~~~~d------~~i~~~~~~~~~~--~~~~~~h~~~i~~~~~~~~~~~las~s~---------  418 (563)
                      ... -..+...++..++.++.+      ..+.+++..+..=  +..+........++.+  ++++++.|+.         
T Consensus        90 ~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~  167 (306)
T 3ii7_A           90 TPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEA--NGLIYVCGGSLGNNVSGRV  167 (306)
T ss_dssp             SCCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEESCTTTCEE
T ss_pred             ccccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEE--CCEEEEECCCCCCCCcccc
Confidence            111 111222345556666544      3577777765431  1111111111122222  5677777764         


Q ss_pred             CCcEEEEeCCCCceeee--ecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCC-----CeEEEEeCCCCeEEE--EecC
Q 008496          419 DVTAKIWNMKQDKYVHD--LREHSKEIYTIRWSPTGSGTNNPNQQLILASASFD-----STVKLWDVELGKLLY--SLNG  489 (563)
Q Consensus       419 dg~i~iwd~~~~~~~~~--~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~d-----g~i~iwd~~~~~~~~--~~~~  489 (563)
                      -..+.+||..+......  +......-..+..  +        +. +++.|+.+     ..+.+||+.+.+=..  .+..
T Consensus       168 ~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~--------~~-i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~  236 (306)
T 3ii7_A          168 LNSCEVYDPATETWTELCPMIEARKNHGLVFV--K--------DK-IFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPW  236 (306)
T ss_dssp             CCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--T--------TE-EEEECCEETTEEBCCEEEEETTTTEEEECCCCSC
T ss_pred             cceEEEeCCCCCeEEECCCccchhhcceEEEE--C--------CE-EEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCC
Confidence            23477888877654321  1100000111111  1        12 44445433     358888887754211  1111


Q ss_pred             CCCCEEEEEEcCCCCEEEEEeCC-----CcEEEEecCCCe
Q 008496          490 HREPVYSLAFSPTGEYLASGSLD-----KSMHIWSLKEGK  524 (563)
Q Consensus       490 h~~~i~~l~~spdg~~lasgs~d-----g~v~iw~~~~~~  524 (563)
                      .......+.+  ++++++.|+.+     ..|.+||+.+.+
T Consensus       237 ~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~  274 (306)
T 3ii7_A          237 KGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETDK  274 (306)
T ss_dssp             CBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTTE
T ss_pred             CccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCe
Confidence            1122233333  67788888854     468889988754

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=95.62  E-value=1.1  Score=45.05  Aligned_cols=109  Identities=10%  Similarity=0.126  Sum_probs=60.6

Q ss_pred             cceeEEEECCCCCEEEEEeCCCcEEEEeCCCCce--eeeecc------cCCCEEEEEEccCCCCCCCCCCcEEEEEEeC-
Q 008496          399 GEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKY--VHDLRE------HSKEIYTIRWSPTGSGTNNPNQQLILASASF-  469 (563)
Q Consensus       399 ~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~--~~~~~~------~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~-  469 (563)
                      .....++|.|+|+++++-...+.|++++..++..  +..+..      .......|+|+|+-.    .+..++++.... 
T Consensus        27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~----~~g~lYv~~s~~~  102 (454)
T 1cru_A           27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFK----NNPYIYISGTFKN  102 (454)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTT----TSCEEEEEEEEEC
T ss_pred             CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcC----cCCEEEEEEeccc
Confidence            3466899999999887665545788887654432  222221      235577899998531    112234433220 


Q ss_pred             ----------CCeEEEEeCCCC-------eEEEE-ecC-CCCCEEEEEEcCCCCEEEEEeC
Q 008496          470 ----------DSTVKLWDVELG-------KLLYS-LNG-HREPVYSLAFSPTGEYLASGSL  511 (563)
Q Consensus       470 ----------dg~i~iwd~~~~-------~~~~~-~~~-h~~~i~~l~~spdg~~lasgs~  511 (563)
                                ...|.-|+...+       +.+.. +.. .......|+|.|||.++++.+.
T Consensus       103 ~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd  163 (454)
T 1cru_A          103 PKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD  163 (454)
T ss_dssp             TTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred             cCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence                      124444443221       22222 221 1124689999999988776553

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=95.19  E-value=5.5  Score=45.05  Aligned_cols=306  Identities=12%  Similarity=0.093  Sum_probs=146.6

Q ss_pred             CCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEc
Q 008496          224 SPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWST  303 (563)
Q Consensus       224 sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~  303 (563)
                      ..++..++-+..+|.+.+-.+.......  ....+..+.+..+..     ...-+++++-.+| +|+.|+..|.-.+|..
T Consensus       283 ~~~~~~~LL~~~~G~l~~l~l~~d~~~~--~~~~V~~l~i~~~~~-----~~~~ssl~~l~~g-~lFvgS~~Gds~l~~~  354 (1158)
T 3ei3_A          283 DPNGSRYLLGDMEGRLFMLLLEKEEQMD--GTVTLKDLRVELLGE-----TSIAECLTYLDNG-VVFVGSRLGDSQLVKL  354 (1158)
T ss_dssp             STTSSEEEEEETTCEEEEEEEEEEC-------CEEEEEEEEEEEE-----CSCCSEEEECSTT-EEEEECSSSCEEEEEE
T ss_pred             ecCCCEEEEEeCCCCEEEEEEEEcCCcc--CceeEEEEEEEEcCC-----ccCccEEEEECCC-EEEEEEecCCcEEEEE
Confidence            3455666777788888766553210000  000111122222211     1123566666555 7888999888888875


Q ss_pred             CCc---------eeEeeccCCCCEEEEEeCCC----CCEEEEeeC---CCcEEEEECCCCcee---EEeeecc-cCeEEE
Q 008496          304 NGD---------LKCTLSKHKGPIFSLKWNKK----GDYLLTGSC---DKTAIVWDVKTEEWK---QQFEFHS-GPTLDV  363 (563)
Q Consensus       304 ~~~---------~~~~~~~h~~~V~~l~~~~~----~~~l~s~s~---D~~v~iwd~~~~~~~---~~~~~~~-~~~~~~  363 (563)
                      ...         ...++ ..-+||..++.-..    ...|++++.   +|++++..  .+--.   ..++... ..+..+
T Consensus       355 ~~~~~~~~~~~~~~~~~-~N~~PI~D~~v~d~~~~~~~~i~~~sG~g~~gsL~~lr--~Gi~~~~~~~~~l~gv~~iWtl  431 (1158)
T 3ei3_A          355 NVDSNEQGSYVVAMETF-TNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSLRIIR--NGIGIHEHASIDLPGIKGLWPL  431 (1158)
T ss_dssp             CSSCCTTSCCEEEEEEE-CCCCSEEEEEEECTTSSSCCEEEEEECCGGGCEEEEEE--ESBCEEEEEEECCCSCCEEEEE
T ss_pred             ecCCCCccceEEeEeee-cCcCCceeEEEEccCCCCCCeEEEEECcCCCCeEEEEe--cCCCEEEEEeecCCCccEEEEE
Confidence            421         12223 24478888876432    246665543   57787763  22111   1111110 111122


Q ss_pred             ecC----CCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeC---------CCcEEEEeCCCC
Q 008496          364 DWR----NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD---------DVTAKIWNMKQD  430 (563)
Q Consensus       364 ~~~----~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~---------dg~i~iwd~~~~  430 (563)
                      ...    .+..++.+..+.+ .++.+... .+....       ...|..+...|+++.-         ...|++.+....
T Consensus       432 ~~~~~~~~~~yLvlS~~~~T-~Vl~i~~e-~veev~-------~~gf~~~~~TL~~~~l~~~~ivQVt~~~Irli~~~~~  502 (1158)
T 3ei3_A          432 RSDPNRETDDTLVLSFVGQT-RVLMLNGE-EVEETE-------LMGFVDDQQTFFCGNVAHQQLIQITSASVRLVSQEPK  502 (1158)
T ss_dssp             CCCSSCSSCCEEEEEETTEE-EEEEEETT-EEEEEC-------CTTCCSSSCEEEEEEETTTEEEEEESSCEEEEESSSC
T ss_pred             eecCCCCCCCEEEEECCCCe-EEEEEeCC-cccccc-------cccccCCCCcEEEEEcCCCeEEEEecCEEEEEECCCC
Confidence            111    1223333333333 34443211 111110       0012222333333321         123555555443


Q ss_pred             ceeeeecccC-CCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEE-ecCCCCCEEEEEEcCC------
Q 008496          431 KYVHDLREHS-KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYS-LNGHREPVYSLAFSPT------  502 (563)
Q Consensus       431 ~~~~~~~~~~-~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~-~~~h~~~i~~l~~spd------  502 (563)
                      ..+..+.... ..|...+...          . .++.++ .+.|.++.+..+..... -..-...|.|+++.|.      
T Consensus       503 ~~~~~w~~p~~~~I~~As~n~----------~-~vvva~-g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~~~~~~  570 (1158)
T 3ei3_A          503 ALVSEWKEPQAKNISVASCNS----------S-QVVVAV-GRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGL  570 (1158)
T ss_dssp             CEEEEECCTTCCCCCEEEECS----------S-EEEEEE-TTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCSSSTTC
T ss_pred             eEEEEEECCCCCEEEEEEeCC----------C-EEEEEE-CCEEEEEEeeCCceeeecccCCCCceEEEEeecCCCCccc
Confidence            3343333221 2233333221          1 233334 57888887766543211 1113457999999864      


Q ss_pred             CCEEEEEeC-CCcEEEEecCCCeeEEEEec--CCCEEEEEEcC--CCCEEEEEECCCeEEEEEe
Q 008496          503 GEYLASGSL-DKSMHIWSLKEGKIVKTYTG--NGGIFEVCWNK--EGDKIAACFANHTVCVLDF  561 (563)
Q Consensus       503 g~~lasgs~-dg~v~iw~~~~~~~~~~~~~--~~~i~~l~w~~--~g~~la~~~~~~~v~v~~~  561 (563)
                      +.++|.|.. |++|+|+++.+.+.+....-  ...+.+++...  ..-+|.+|..||.+..+.+
T Consensus       571 s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~  634 (1158)
T 3ei3_A          571 SPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGL  634 (1158)
T ss_dssp             CSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEE
T ss_pred             ccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEE
Confidence            379999997 99999999988766544332  22333443322  2347888999998765554

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=95.10  E-value=1.4  Score=41.33  Aligned_cols=217  Identities=6%  Similarity=-0.006  Sum_probs=103.9

Q ss_pred             EEEEeeC--CCcEEEEECCCCceeEEeeecccC-eEEEecCCCceEEEEeCC----CeEEEEEcCCCcc--eeeecCCCc
Q 008496          329 YLLTGSC--DKTAIVWDVKTEEWKQQFEFHSGP-TLDVDWRNNVSFATSSTD----NMIYVCKIGENRP--IKTFAGHQG  399 (563)
Q Consensus       329 ~l~s~s~--D~~v~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d----~~i~~~~~~~~~~--~~~~~~h~~  399 (563)
                      .++.|+.  ...+.+||+.+.+|...-...... -..+...++..++.++.+    ..+++++..+..-  +..+.....
T Consensus        14 l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~   93 (306)
T 3ii7_A           14 RIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFWDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRD   93 (306)
T ss_dssp             EEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCB
T ss_pred             EEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCcccc
Confidence            3445554  357899999998876532211110 111222345556666544    5677777765531  111111111


Q ss_pred             ceeEEEECCCCCEEEEEeCC------CcEEEEeCCCCceeee--ecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeC--
Q 008496          400 EVNCVKWDPTGSLLASCSDD------VTAKIWNMKQDKYVHD--LREHSKEIYTIRWSPTGSGTNNPNQQLILASASF--  469 (563)
Q Consensus       400 ~i~~~~~~~~~~~las~s~d------g~i~iwd~~~~~~~~~--~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~--  469 (563)
                      ...++.+  ++++++.|+.+      ..+.+||..+......  +......-..+.+  +        +. +++.|+.  
T Consensus        94 ~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~--------~~-iyv~GG~~~  160 (306)
T 3ii7_A           94 SLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEA--N--------GL-IYVCGGSLG  160 (306)
T ss_dssp             SCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--T--------TE-EEEECCEES
T ss_pred             ceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEE--C--------CE-EEEECCCCC
Confidence            1222233  57777777765      3578888877654321  1100000111111  1        12 3344432  


Q ss_pred             -------CCeEEEEeCCCCeEEEE--ecCCCCCEEEEEEcCCCCEEEEEeCC-----CcEEEEecCCCeeEEE--Eec-C
Q 008496          470 -------DSTVKLWDVELGKLLYS--LNGHREPVYSLAFSPTGEYLASGSLD-----KSMHIWSLKEGKIVKT--YTG-N  532 (563)
Q Consensus       470 -------dg~i~iwd~~~~~~~~~--~~~h~~~i~~l~~spdg~~lasgs~d-----g~v~iw~~~~~~~~~~--~~~-~  532 (563)
                             -..+.+||+.+.+=...  +......-..+.+  ++++++.|+.+     ..+.+||+.+.+-...  ... .
T Consensus       161 ~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r  238 (306)
T 3ii7_A          161 NNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKG  238 (306)
T ss_dssp             CTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCB
T ss_pred             CCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCc
Confidence                   34588889887642211  1111111122223  66777777654     3688999987642221  111 0


Q ss_pred             CCEEEEEEcCCCCEEEEEECC-----CeEEEEEee
Q 008496          533 GGIFEVCWNKEGDKIAACFAN-----HTVCVLDFR  562 (563)
Q Consensus       533 ~~i~~l~w~~~g~~la~~~~~-----~~v~v~~~~  562 (563)
                      .....+..  +++.+++|+.+     ..+.+||..
T Consensus       239 ~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~  271 (306)
T 3ii7_A          239 VTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTE  271 (306)
T ss_dssp             SCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETT
T ss_pred             cceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCC
Confidence            11122222  56666776533     356777753

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=95.02  E-value=2.3  Score=40.56  Aligned_cols=188  Identities=13%  Similarity=0.140  Sum_probs=102.8

Q ss_pred             CEEEEEeCCCeEEEEEc-CCceeEeeccC-CCCEEEEEeC--CCCCEEEEe--eCCCcEEEEECCCCceeEEeeec----
Q 008496          287 TLLATGSYDGQARIWST-NGDLKCTLSKH-KGPIFSLKWN--KKGDYLLTG--SCDKTAIVWDVKTEEWKQQFEFH----  356 (563)
Q Consensus       287 ~~l~sg~~dg~i~vw~~-~~~~~~~~~~h-~~~V~~l~~~--~~~~~l~s~--s~D~~v~iwd~~~~~~~~~~~~~----  356 (563)
                      .+++.++.||.|.-.|. +|+.+..+... ..++....-.  +.+..++.+  +.||.+..+|..++.....+...    
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~   90 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS   90 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence            46888999999999995 57666665443 1333332211  112234433  68999999999888655433321    


Q ss_pred             ccCeEE-----E-e---cCCCceEEEEeCCCeEEEEEcCCCcceeeecCCC--cc-----eeEEEEC-----CCCCEEEE
Q 008496          357 SGPTLD-----V-D---WRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQ--GE-----VNCVKWD-----PTGSLLAS  415 (563)
Q Consensus       357 ~~~~~~-----~-~---~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~--~~-----i~~~~~~-----~~~~~las  415 (563)
                      ..|...     + +   -..+..+.+++.++.++..+..+++.+..+....  +.     ..|....     -.+..|+.
T Consensus        91 ~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~i  170 (339)
T 2be1_A           91 TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIVI  170 (339)
T ss_dssp             TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEEEE
T ss_pred             ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEEE
Confidence            112211     0 0   0145567788889999999999998888775321  10     1122211     12355667


Q ss_pred             EeCCCcEEEEeCCCCceeeeecccCCCEEEEEEccCCCC-------CCCCCCcEEEEEEeCCCeEEEEeCCCCeEEE
Q 008496          416 CSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSG-------TNNPNQQLILASASFDSTVKLWDVELGKLLY  485 (563)
Q Consensus       416 ~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~-------~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~  485 (563)
                      ++.+..+.+.+ ++++ +-.+       .--.|.+....       ....+.. + +.++.||.|.-+|..+|+.++
T Consensus       171 g~~~y~v~~~~-~sG~-~W~~-------~~s~~~~~~~~~~~~~~~~~s~Dg~-~-~~~~~dg~v~A~d~~~G~~~W  236 (339)
T 2be1_A          171 GKTIFELGIHS-YDGA-SYNV-------TYSTWQQNVLDVPLALQNTFSKDGM-C-IAPFRDKSLLASDLDFRIARW  236 (339)
T ss_dssp             EEEEEECEECC-TTSC-CCCC-------EEEEEECCTTTHHHHTTCSSCSSSC-C-EEEETTTEEEEECSTTCCEEE
T ss_pred             ecceEEEEEEC-CCCC-eEEE-------ecccccccccccccccccccccCCc-E-EEECCCCEEEEEECCCCcEEE
Confidence            77777666655 3332 1111       11123222110       0001122 2 347899999999999999887

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=95.00  E-value=1.7  Score=49.36  Aligned_cols=193  Identities=13%  Similarity=0.210  Sum_probs=118.1

Q ss_pred             eCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcC-CCcceeeecCC----
Q 008496          323 WNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIG-ENRPIKTFAGH----  397 (563)
Q Consensus       323 ~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~-~~~~~~~~~~h----  397 (563)
                      .||..+.++-= ...++.|+|+.+...+..+.+.. ++.=-.|.+...++.. ++..|+.|++. ...|++.|..|    
T Consensus        73 MnP~~~iiALr-ag~~lQiFnl~~k~klks~~~~e-~VvfWkWis~~~l~lV-T~~aVyHW~~~~~s~P~k~fdR~~~L~  149 (1630)
T 1xi4_A           73 MNPASKVIALK-AGKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISLNTVALV-TDNAVYHWSMEGESQPVKMFDRHSSLA  149 (1630)
T ss_pred             cCCCcceEEEe-cCCeEEEeehHHhhhhcccccCC-CceEEEecCCCeeEEE-cCCeEEEeccCCCCccHHHHhcchhcc
Confidence            46666544433 36799999999888777776644 4555678777766554 35679999996 45677777766    


Q ss_pred             CcceeEEEECCCCCEEEEEe-------CCCcEEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeC-
Q 008496          398 QGEVNCVKWDPTGSLLASCS-------DDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASF-  469 (563)
Q Consensus       398 ~~~i~~~~~~~~~~~las~s-------~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~-  469 (563)
                      ...|..-..+++.++++..+       -.|.+.+|+...+. ...+.+|......+..  +|.    +....+++-+.. 
T Consensus       150 ~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~-sQ~iegha~~F~~~~~--~~~----~~~~~l~~f~~~~  222 (1630)
T 1xi4_A          150 GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASFAQFKM--EGN----AEESTLFCFAVRG  222 (1630)
T ss_pred             cCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccccc-chhhhHhHhhhheecc--CCC----CCCceEEEEEEec
Confidence            34576777889999876433       34677888865443 2345566554433332  111    111123332222 


Q ss_pred             --CCeEEEEeCCCC---eEEEEe-------cC---CCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeE
Q 008496          470 --DSTVKLWDVELG---KLLYSL-------NG---HREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIV  526 (563)
Q Consensus       470 --dg~i~iwd~~~~---~~~~~~-------~~---h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~  526 (563)
                        .+.++|-++...   ...+..       ..   ..-| .++..|+.-..+..-+.-|.|++||+.+|.++
T Consensus       223 ~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfp-v~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i  293 (1630)
T 1xi4_A          223 QAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFP-VAMQISEKHDVVFLITKYGYIHLYDLETGTCI  293 (1630)
T ss_pred             CCCceEEEEecCCCccCCCCCccccccccCCcccccCcc-eEEEeccccCEEEEEecCceEEEEecccchhh
Confidence              267888877432   111110       00   1122 35666666667777788999999999999865

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=94.97  E-value=1.6  Score=41.00  Aligned_cols=224  Identities=13%  Similarity=0.136  Sum_probs=107.0

Q ss_pred             CCCCEEEEEeCC----CeEEEEEcCCceeEeeccCCC---CEEEEEeCCCCCEEEEeeC----C-----CcEEEEECCCC
Q 008496          284 GEGTLLATGSYD----GQARIWSTNGDLKCTLSKHKG---PIFSLKWNKKGDYLLTGSC----D-----KTAIVWDVKTE  347 (563)
Q Consensus       284 ~~g~~l~sg~~d----g~i~vw~~~~~~~~~~~~h~~---~V~~l~~~~~~~~l~s~s~----D-----~~v~iwd~~~~  347 (563)
                      -++.+++.|+.+    ..+.+||.....-..+.....   .-..+..  ++..++.|+.    +     ..+.+||+.+.
T Consensus        23 ~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~  100 (308)
T 1zgk_A           23 VGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPMTN  100 (308)
T ss_dssp             CCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCEEEETTEEEECCCEEEEETTTT
T ss_pred             CCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEEE--CCEEEEECCCcCCCCCCeecceEEEECCCCC
Confidence            356677777743    367788876543333321111   1111222  4556666665    2     46889999988


Q ss_pred             ceeEEeeecccC-eEEEecCCCceEEEEeCC-----CeEEEEEcCCCcc--eeeecCCCcceeEEEECCCCCEEEEEeCC
Q 008496          348 EWKQQFEFHSGP-TLDVDWRNNVSFATSSTD-----NMIYVCKIGENRP--IKTFAGHQGEVNCVKWDPTGSLLASCSDD  419 (563)
Q Consensus       348 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d-----~~i~~~~~~~~~~--~~~~~~h~~~i~~~~~~~~~~~las~s~d  419 (563)
                      +|...-...... -..+...++..++.++.+     ..+.+++..+..-  +..+........++.+  ++++++.|+.+
T Consensus       101 ~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~  178 (308)
T 1zgk_A          101 QWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFD  178 (308)
T ss_dssp             EEEECCCCSSCCBTCEEEEETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBC
T ss_pred             eEeECCCCCcCccccEEEEECCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEEEeCCC
Confidence            876542221110 011112244455555432     3467777655431  1111111111222333  57777777754


Q ss_pred             -----CcEEEEeCCCCceeee--ecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCC-----CeEEEEeCCCCeEEE--
Q 008496          420 -----VTAKIWNMKQDKYVHD--LREHSKEIYTIRWSPTGSGTNNPNQQLILASASFD-----STVKLWDVELGKLLY--  485 (563)
Q Consensus       420 -----g~i~iwd~~~~~~~~~--~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~d-----g~i~iwd~~~~~~~~--  485 (563)
                           ..+.+||+.+......  +.........+.+  +        + .+++.|+.+     ..+.+||+.+.+-..  
T Consensus       179 ~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~--------~-~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~  247 (308)
T 1zgk_A          179 GTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--H--------N-CIYAAGGYDGQDQLNSVERYDVETETWTFVA  247 (308)
T ss_dssp             SSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--T--------T-EEEEECCBCSSSBCCCEEEEETTTTEEEECC
T ss_pred             CCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--C--------C-EEEEEeCCCCCCccceEEEEeCCCCcEEECC
Confidence                 3578888876654321  1100001111111  1        1 245555544     468889988764321  


Q ss_pred             EecCCCCCEEEEEEcCCCCEEEEEeCC-----CcEEEEecCCCe
Q 008496          486 SLNGHREPVYSLAFSPTGEYLASGSLD-----KSMHIWSLKEGK  524 (563)
Q Consensus       486 ~~~~h~~~i~~l~~spdg~~lasgs~d-----g~v~iw~~~~~~  524 (563)
                      .+.........+.+  ++++++.|+.+     ..|.+||+.+.+
T Consensus       248 ~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~  289 (308)
T 1zgk_A          248 PMKHRRSALGITVH--QGRIYVLGGYDGHTFLDSVECYDPDTDT  289 (308)
T ss_dssp             CCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred             CCCCCccceEEEEE--CCEEEEEcCcCCCcccceEEEEcCCCCE
Confidence            11111111122222  66777777754     357788887654

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=94.93  E-value=1.4  Score=41.18  Aligned_cols=209  Identities=15%  Similarity=0.170  Sum_probs=97.7

Q ss_pred             CcEEEEECCCCceeEEeeecccC-eEEEecCCCceEEEEeCC-----CeEEEEEcCCCcc--eeeecCCCcceeEEEECC
Q 008496          337 KTAIVWDVKTEEWKQQFEFHSGP-TLDVDWRNNVSFATSSTD-----NMIYVCKIGENRP--IKTFAGHQGEVNCVKWDP  408 (563)
Q Consensus       337 ~~v~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d-----~~i~~~~~~~~~~--~~~~~~h~~~i~~~~~~~  408 (563)
                      ..+.+||+.+..+...-...... -..+...++..++.++.+     ..+++++..+..-  +..+........++.+  
T Consensus        30 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--  107 (302)
T 2xn4_A           30 RSVECYDFKEERWHQVAELPSRRCRAGMVYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL--  107 (302)
T ss_dssp             CCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--
T ss_pred             CcEEEEcCcCCcEeEcccCCcccccceEEEECCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE--
Confidence            35788898888776532211110 011222245555665533     3467777765431  1111111111222233  


Q ss_pred             CCCEEEEEeCCC-----cEEEEeCCCCceeee--ecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCC-------CeEE
Q 008496          409 TGSLLASCSDDV-----TAKIWNMKQDKYVHD--LREHSKEIYTIRWSPTGSGTNNPNQQLILASASFD-------STVK  474 (563)
Q Consensus       409 ~~~~las~s~dg-----~i~iwd~~~~~~~~~--~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~d-------g~i~  474 (563)
                      ++++++.|+.++     .+.+||..+......  +.........+.+  +        +. +++.|+.+       ..+.
T Consensus       108 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~--------~~-iyv~GG~~~~~~~~~~~~~  176 (302)
T 2xn4_A          108 NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV--G--------GL-LYAVGGYDVASRQCLSTVE  176 (302)
T ss_dssp             TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--T--------TE-EEEECCEETTTTEECCCEE
T ss_pred             CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE--C--------CE-EEEEeCCCCCCCccccEEE
Confidence            567777777553     467788776654321  1110000111111  1        12 34444432       3588


Q ss_pred             EEeCCCCeEEE--EecCCCCCEEEEEEcCCCCEEEEEeCC-----CcEEEEecCCCeeEEEEecC---CCEEEEEEcCCC
Q 008496          475 LWDVELGKLLY--SLNGHREPVYSLAFSPTGEYLASGSLD-----KSMHIWSLKEGKIVKTYTGN---GGIFEVCWNKEG  544 (563)
Q Consensus       475 iwd~~~~~~~~--~~~~h~~~i~~l~~spdg~~lasgs~d-----g~v~iw~~~~~~~~~~~~~~---~~i~~l~w~~~g  544 (563)
                      +||+.+.+=..  .+.........+.+  ++++++.|+.+     ..+.+||+.+.+-...-...   .....+.  -++
T Consensus       177 ~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~--~~~  252 (302)
T 2xn4_A          177 CYNATTNEWTYIAEMSTRRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCA--VNG  252 (302)
T ss_dssp             EEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETT
T ss_pred             EEeCCCCcEEECCCCccccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEE--ECC
Confidence            88887664322  12111111222333  67777888764     36899999876532221111   0111122  256


Q ss_pred             CEEEEEECCC-----eEEEEEee
Q 008496          545 DKIAACFANH-----TVCVLDFR  562 (563)
Q Consensus       545 ~~la~~~~~~-----~v~v~~~~  562 (563)
                      +.+++|+.++     .+.+||..
T Consensus       253 ~i~v~GG~~~~~~~~~v~~yd~~  275 (302)
T 2xn4_A          253 LLYVVGGDDGSCNLASVEYYNPT  275 (302)
T ss_dssp             EEEEECCBCSSSBCCCEEEEETT
T ss_pred             EEEEECCcCCCcccccEEEEcCC
Confidence            6666665443     47777753

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=94.86  E-value=3  Score=40.21  Aligned_cols=54  Identities=19%  Similarity=0.321  Sum_probs=32.9

Q ss_pred             ceeEEEECC-------CCCEEEEEeCCCcEEEEeCCCCceeee--e-cccCCCEEEEEEccCCC
Q 008496          400 EVNCVKWDP-------TGSLLASCSDDVTAKIWNMKQDKYVHD--L-REHSKEIYTIRWSPTGS  453 (563)
Q Consensus       400 ~i~~~~~~~-------~~~~las~s~dg~i~iwd~~~~~~~~~--~-~~~~~~i~~~~~~p~~~  453 (563)
                      .+..+.|..       +|.++++.-..+.|...++..++.+..  + ......+..+++.|+|.
T Consensus       272 ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~  335 (353)
T 2g8s_A          272 AVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGY  335 (353)
T ss_dssp             CEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSC
T ss_pred             CcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCc
Confidence            455677753       467777766677777777665543322  2 12234678888888774

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=94.84  E-value=1.4  Score=40.96  Aligned_cols=220  Identities=14%  Similarity=0.049  Sum_probs=109.3

Q ss_pred             CeEEEEECCCCCEEEEEeCCCeEEEEEcC--CceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEe
Q 008496          276 DVTTLDWNGEGTLLATGSYDGQARIWSTN--GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQF  353 (563)
Q Consensus       276 ~V~~l~~s~~g~~l~sg~~dg~i~vw~~~--~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~  353 (563)
                      .|..++-..... ++. . ||.+..|-.+  +++-.. ......|..++....  +.+.-. ||.|..|-..........
T Consensus        25 ~i~~ia~G~~h~-~~l-~-~G~v~~wG~n~~Gqlg~p-~~~~~~i~~ia~G~~--hs~~l~-~G~v~~wG~n~~Gqlg~P   97 (282)
T 3qhy_B           25 GVDAIAGGYFHG-LAL-K-GGKVLGWGANLNGQLTMP-AATQSGVDAIAAGNY--HSLALK-DGEVIAWGGNEDGQTTVP   97 (282)
T ss_dssp             SCCEEEECSSEE-EEE-E-TTEEEEEECCSSSTTSCC-GGGGSCCCEEEECSS--EEEEEE-TTEEEEEECCTTSTTCCC
T ss_pred             CCcEEEeCCCeE-EEE-E-CCEEEEEeCCCCCCCCCC-ccCCCCEEEEEeCCC--EEEEEE-CCEEEEeeCCCCCCCCCC
Confidence            455555544322 333 4 8999999754  222111 111235666665433  222224 899999965432111100


Q ss_pred             eecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCcee
Q 008496          354 EFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYV  433 (563)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~  433 (563)
                      ......+..+..-....++..  ++.|+.|-......+.........|..++......+++  . ||.+..|-......+
T Consensus        98 ~~~~~~v~~ia~G~~hs~al~--~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~~~~~l--~-~G~v~~wG~n~~gql  172 (282)
T 3qhy_B           98 AEARSGVDAIAAGAWASYALK--DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYTALAV--K-NGGVIAWGDNYFGQT  172 (282)
T ss_dssp             GGGSSSEEEEEEETTEEEEEE--TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEEEEE--E-TTEEEEEECCTTSTT
T ss_pred             cccCCCeEEEECcCCEEEEEe--CCeEEEecCCCCCcCCCCccCCCCeEEEEcccCEEEEE--E-CCEEEEecCCCCCCC
Confidence            111224555555455555554  89999997654322111111223577777654433332  3 799999976543222


Q ss_pred             eeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCC
Q 008496          434 HDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDK  513 (563)
Q Consensus       434 ~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg  513 (563)
                      ..-......|..++-...          ..++.  .||.|..|-....-.+-.-......|..|+-.....+ |. . ||
T Consensus       173 g~p~~~~~~v~~i~~G~~----------hs~al--~~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~h~~-al-~-~g  237 (282)
T 3qhy_B          173 TVPAEAQSGVDDVAGGIF----------HSLAL--KDGKVIAWGDNRYKQTTVPTEALSGVSAIASGEWYSL-AL-K-NG  237 (282)
T ss_dssp             SCCGGGGSSEEEEEECSS----------EEEEE--ETTEEEEEECCTTSTTCCCGGGGSSCCEEEECSSCEE-EE-E-TT
T ss_pred             CCceecCCCeEEEEecCC----------EEEEE--ECCeEEEEECCCCCCCCCCcccCCCceEEEcCCCEEE-EE-E-CC
Confidence            111112345666654332          23444  4899999965421111000111234667765544333 33 3 89


Q ss_pred             cEEEEecCC
Q 008496          514 SMHIWSLKE  522 (563)
Q Consensus       514 ~v~iw~~~~  522 (563)
                      .|+.|=...
T Consensus       238 ~v~~wG~n~  246 (282)
T 3qhy_B          238 KVIAWGSSR  246 (282)
T ss_dssp             EEEEESTTC
T ss_pred             EEEEecCCC
Confidence            999997654

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=94.68  E-value=0.95  Score=40.05  Aligned_cols=139  Identities=11%  Similarity=0.034  Sum_probs=77.5

Q ss_pred             ceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccCCC--------EEEEEEccCCCCCCCCCCcEEEEEEeCCC
Q 008496          400 EVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKE--------IYTIRWSPTGSGTNNPNQQLILASASFDS  471 (563)
Q Consensus       400 ~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~--------i~~~~~~p~~~~~~~~~~~~~l~s~s~dg  471 (563)
                      .+..++|+|+|.+.+.  .+|.+.-.+..+.... ........        -.++.|.|+|.         +.++  .||
T Consensus        42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~-~W~~s~t~IG~~Gw~~F~a~~fD~~G~---------LYav--~dG  107 (236)
T 1tl2_A           42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTHDND-NWMGRAKKIGNGGWNQFQFLFFDPNGY---------LYAV--SKD  107 (236)
T ss_dssp             TCSEEEECTTSCEEEE--ETTEEEEESCCCSTTC-CHHHHCEEEECSCGGGCSEEEECTTSC---------EEEE--ETT
T ss_pred             cceeEEECCCccEEEE--eCCeEEEECCCCCCcc-cccccccEecccccccceEEEECCCCC---------EEEe--CCC
Confidence            5679999999998777  6666555554332111 01111112        25677778774         3333  569


Q ss_pred             eEEEEeCCCC-eEE-----EEe-cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCe------eEEEEe-cC-CCEE
Q 008496          472 TVKLWDVELG-KLL-----YSL-NGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGK------IVKTYT-GN-GGIF  536 (563)
Q Consensus       472 ~i~iwd~~~~-~~~-----~~~-~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~------~~~~~~-~~-~~i~  536 (563)
                      .|+-++..+. ..-     ..+ ..--..+..|.|.|+|.+.|..  |+.++-+....+.      ....+. .. ....
T Consensus       108 ~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr  185 (236)
T 1tl2_A          108 KLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFK  185 (236)
T ss_dssp             EEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEE
T ss_pred             EEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEE
Confidence            9987775321 100     011 1112357999999999988877  7775443333211      011111 11 1234


Q ss_pred             EEEEcCCCCEEEEEECCCeE
Q 008496          537 EVCWNKEGDKIAACFANHTV  556 (563)
Q Consensus       537 ~l~w~~~g~~la~~~~~~~v  556 (563)
                      .+.|.++|...++.  ++.+
T Consensus       186 ~l~f~~~G~l~~v~--~g~~  203 (236)
T 1tl2_A          186 FLFFSSVGTLFGVQ--GGKF  203 (236)
T ss_dssp             EEEECTTSCEEEEE--TTEE
T ss_pred             EEEECCCCcEEEEe--CCeE
Confidence            57799999988887  6643

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=94.67  E-value=0.19  Score=48.08  Aligned_cols=195  Identities=13%  Similarity=0.043  Sum_probs=101.7

Q ss_pred             CEEEEeeCCCcEEEEECCCCceeEEeeec-ccCeEEEecC----CCceEEEE-eCCCeEEEEEcCCCcceeeecC----C
Q 008496          328 DYLLTGSCDKTAIVWDVKTEEWKQQFEFH-SGPTLDVDWR----NNVSFATS-STDNMIYVCKIGENRPIKTFAG----H  397 (563)
Q Consensus       328 ~~l~s~s~D~~v~iwd~~~~~~~~~~~~~-~~~~~~~~~~----~~~~~~~~-~~d~~i~~~~~~~~~~~~~~~~----h  397 (563)
                      ..++.++.||.|.-.|..+|+.+-++... ..+++...-.    +...++.. ..||.++.++..++.....+.-    .
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~   90 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS   90 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence            46888999999999999999877776554 1233332211    12333343 5899999998766533222210    1


Q ss_pred             CcceeE---EEE-C----CCCCEEEEEeCCCcEEEEeCCCCceeeeecccCC--CE---EEEEEccCCCCCCCCCCcEEE
Q 008496          398 QGEVNC---VKW-D----PTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSK--EI---YTIRWSPTGSGTNNPNQQLIL  464 (563)
Q Consensus       398 ~~~i~~---~~~-~----~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~--~i---~~~~~~p~~~~~~~~~~~~~l  464 (563)
                      ..++..   ... .    ..+..+.+|+.+|.+.-.|+.+++.+..+.....  .+   ...+.... . .........+
T Consensus        91 ~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~-d-~~~d~~~~~v  168 (339)
T 2be1_A           91 TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEE-K-IKLQECENMI  168 (339)
T ss_dssp             TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC----------------------CCEE
T ss_pred             ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCccccccccccccccc-c-cccccCCCeE
Confidence            111111   000 0    1355678999999999999999998877753211  00   00000000 0 0000000134


Q ss_pred             EEEeCCCeEEEEeCCCCeEEEEec-----CCCC--CE-EEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEE
Q 008496          465 ASASFDSTVKLWDVELGKLLYSLN-----GHRE--PV-YSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVK  527 (563)
Q Consensus       465 ~s~s~dg~i~iwd~~~~~~~~~~~-----~h~~--~i-~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~  527 (563)
                      ..+..+..+.+.+ ++|+ ++.+.     ....  ++ .+-.++.|+.+++ ++.||.|.-+|..+|+.+.
T Consensus       169 ~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~~~-~~~dg~v~A~d~~~G~~~W  236 (339)
T 2be1_A          169 VIGKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMCIA-PFRDKSLLASDLDFRIARW  236 (339)
T ss_dssp             EEEEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCCEE-EETTTEEEEECSTTCCEEE
T ss_pred             EEecceEEEEEEC-CCCC-eEEEecccccccccccccccccccccCCcEEE-ECCCCEEEEEECCCCcEEE
Confidence            4555666666655 3343 22211     1100  00 0001123566644 7889999999998888765

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=94.46  E-value=0.56  Score=45.95  Aligned_cols=125  Identities=12%  Similarity=0.137  Sum_probs=77.0

Q ss_pred             CceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCC--CCCceEEEEEeeecccccCCCCeEEEEECCC---CCEEE
Q 008496          216 SEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQ--NGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE---GTLLA  290 (563)
Q Consensus       216 ~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~---g~~l~  290 (563)
                      +.|..+..||+|++||..+ +..|.|-.++.+.......  ..+..... .+..........+|..+.|+|-   |..|+
T Consensus        66 ~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~t-y~l~~~~~~~~s~I~qVlWHPl~~~ds~LV  143 (452)
T 3pbp_A           66 DDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFH-YSIDEEEVGPKSSIKKVLFHPKSYRDSCIV  143 (452)
T ss_dssp             CTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEE-EEGGGCC--CCCCEEEEEECTTBGGGCEEE
T ss_pred             CceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccccccceeE-EEcCCcccCCCCceeEEEeccccCCCCeEE
Confidence            3577899999999999874 5688888887543211100  01222111 1111111113577999999994   57899


Q ss_pred             EEeCCCeEEEEEcCCce--eEeec---------cCCCCEEEEEeCCCCCEEEE--eeCCCcEEEE
Q 008496          291 TGSYDGQARIWSTNGDL--KCTLS---------KHKGPIFSLKWNKKGDYLLT--GSCDKTAIVW  342 (563)
Q Consensus       291 sg~~dg~i~vw~~~~~~--~~~~~---------~h~~~V~~l~~~~~~~~l~s--~s~D~~v~iw  342 (563)
                      +-..|+.||+||.....  ...+.         .....|.+++|.+++-.|..  .+..|.|.-.
T Consensus       144 VLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          144 VLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             EEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred             EEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence            99999999999976411  01222         12256888999987755555  3366666543

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=94.18  E-value=3.8  Score=38.56  Aligned_cols=140  Identities=11%  Similarity=0.104  Sum_probs=65.4

Q ss_pred             EEEEEeCCCeEEEEEcCCceeEe--ecc-CCCCEEEEEeCCCCCEEEEeeC----CC-------cEEEEECCCCceeEEe
Q 008496          288 LLATGSYDGQARIWSTNGDLKCT--LSK-HKGPIFSLKWNKKGDYLLTGSC----DK-------TAIVWDVKTEEWKQQF  353 (563)
Q Consensus       288 ~l~sg~~dg~i~vw~~~~~~~~~--~~~-h~~~V~~l~~~~~~~~l~s~s~----D~-------~v~iwd~~~~~~~~~~  353 (563)
                      +++.|+.  .+.+||.....-..  +.. ....-.++. ..++..++.|+.    ++       .+.+||+.+.+|...-
T Consensus        18 i~~~GG~--~~~~yd~~~~~W~~~~~~~~~~r~~~~~~-~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~   94 (318)
T 2woz_A           18 ILLVNDT--AAVAYDPMENECYLTALAEQIPRNHSSIV-TQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLP   94 (318)
T ss_dssp             EEEECSS--EEEEEETTTTEEEEEEECTTSCSSEEEEE-CSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECS
T ss_pred             hhhcccc--ceEEECCCCCceecccCCccCCccceEEE-EECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECC
Confidence            3444443  36777765443222  111 111122332 346667777763    12       1778899888876532


Q ss_pred             eeccc-CeEEEecCCCceEEEEeCC-------CeEEEEEcCCCcce--eeecCCCcceeEEEECCCCCEEEEEeCC----
Q 008496          354 EFHSG-PTLDVDWRNNVSFATSSTD-------NMIYVCKIGENRPI--KTFAGHQGEVNCVKWDPTGSLLASCSDD----  419 (563)
Q Consensus       354 ~~~~~-~~~~~~~~~~~~~~~~~~d-------~~i~~~~~~~~~~~--~~~~~h~~~i~~~~~~~~~~~las~s~d----  419 (563)
                      ..... ....+...++..++.++.+       ..+++++..+.+=.  ..+......-.++.  .++++++.|+.+    
T Consensus        95 ~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~  172 (318)
T 2woz_A           95 PLPSARCLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS--HNGMIYCLGGKTDDKK  172 (318)
T ss_dssp             CBSSCBCSCEEEEETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE--ETTEEEEECCEESSSC
T ss_pred             CCCccccccceEEECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE--ECCEEEEEcCCCCCCC
Confidence            21111 0112222245555665543       24667776554311  11111001111222  367777777642    


Q ss_pred             --CcEEEEeCCCCce
Q 008496          420 --VTAKIWNMKQDKY  432 (563)
Q Consensus       420 --g~i~iwd~~~~~~  432 (563)
                        ..+.+||..+...
T Consensus       173 ~~~~~~~yd~~~~~W  187 (318)
T 2woz_A          173 CTNRVFIYNPKKGDW  187 (318)
T ss_dssp             BCCCEEEEETTTTEE
T ss_pred             ccceEEEEcCCCCEE
Confidence              3578889877654

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=94.18  E-value=3.3  Score=38.90  Aligned_cols=177  Identities=8%  Similarity=0.077  Sum_probs=85.3

Q ss_pred             EEEeeCCCcEEEEECCCCceeEEeeecc---cCeEEEecCCCceEEEEeC-----C------CeEEEEEcCCCcc--eee
Q 008496          330 LLTGSCDKTAIVWDVKTEEWKQQFEFHS---GPTLDVDWRNNVSFATSST-----D------NMIYVCKIGENRP--IKT  393 (563)
Q Consensus       330 l~s~s~D~~v~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~-----d------~~i~~~~~~~~~~--~~~  393 (563)
                      ++.|+  ..+.+||+.+.+|.. .....   ..-..+...++..++.++.     .      ..++.++..+.+=  +..
T Consensus         8 ~~~GG--~~~~~yd~~~~~W~~-~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~   84 (315)
T 4asc_A            8 FMISE--EGAVAYDPAANECYC-ASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPP   84 (315)
T ss_dssp             EEEET--TEEEEEETTTTEEEE-EECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCC
T ss_pred             EEEcC--CceEEECCCCCeEec-CCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCC
Confidence            34454  579999999998864 22211   1122333445556666652     1      1256677655431  111


Q ss_pred             ecCCCcceeEEEECCCCCEEEEEeCC--------CcEEEEeCCCCceeee--ecccCCCEEEEEEccCCCCCCCCCCcEE
Q 008496          394 FAGHQGEVNCVKWDPTGSLLASCSDD--------VTAKIWNMKQDKYVHD--LREHSKEIYTIRWSPTGSGTNNPNQQLI  463 (563)
Q Consensus       394 ~~~h~~~i~~~~~~~~~~~las~s~d--------g~i~iwd~~~~~~~~~--~~~~~~~i~~~~~~p~~~~~~~~~~~~~  463 (563)
                      +.........+.+  ++++++.|+.+        ..+.+||..+.+....  +.........+..  +        +. +
T Consensus        85 ~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~--------~~-i  151 (315)
T 4asc_A           85 LPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSH--M--------DL-V  151 (315)
T ss_dssp             BSSCEESCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--T--------TE-E
T ss_pred             CCcchhceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEE--C--------CE-E
Confidence            1111111112222  56777777732        3578888877653321  1100000011111  1        12 4


Q ss_pred             EEEEeC-C-----CeEEEEeCCCCeEEE--EecCCCCCEEEEEEcCCCCEEEEEeCCC-----cEEEEecCCCe
Q 008496          464 LASASF-D-----STVKLWDVELGKLLY--SLNGHREPVYSLAFSPTGEYLASGSLDK-----SMHIWSLKEGK  524 (563)
Q Consensus       464 l~s~s~-d-----g~i~iwd~~~~~~~~--~~~~h~~~i~~l~~spdg~~lasgs~dg-----~v~iw~~~~~~  524 (563)
                      ++.|+. +     ..+.+||..+.+=..  .+......-.++.+  ++++++.|+.++     .+.+||+.+.+
T Consensus       152 yv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~  223 (315)
T 4asc_A          152 YVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNK  223 (315)
T ss_dssp             EEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTE
T ss_pred             EEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCe
Confidence            445554 2     358888887654221  11111111122233  677778887654     58899998765

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=93.47  E-value=6.9  Score=39.14  Aligned_cols=102  Identities=10%  Similarity=0.157  Sum_probs=57.1

Q ss_pred             CEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeee--------cccCeEEEecCC-----CceEEEEeC-------
Q 008496          317 PIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEF--------HSGPTLDVDWRN-----NVSFATSST-------  376 (563)
Q Consensus       317 ~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~--------~~~~~~~~~~~~-----~~~~~~~~~-------  376 (563)
                      ..++|+|.|+|+.+++-...+.|++++..++........        .....+.+.+..     ...+++.+.       
T Consensus        28 ~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~  107 (454)
T 1cru_A           28 KPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKSTD  107 (454)
T ss_dssp             SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC--
T ss_pred             CceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCCc
Confidence            457999999998666644335788887655543322111        122345677763     334444332       


Q ss_pred             -----CCeEEEEEcCCC-------ccee-eec-CCCcceeEEEECCCCCEEEEEeC
Q 008496          377 -----DNMIYVCKIGEN-------RPIK-TFA-GHQGEVNCVKWDPTGSLLASCSD  418 (563)
Q Consensus       377 -----d~~i~~~~~~~~-------~~~~-~~~-~h~~~i~~~~~~~~~~~las~s~  418 (563)
                           ...|..++....       +.+. .+. +.......|+|.|||.+.++.++
T Consensus       108 ~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd  163 (454)
T 1cru_A          108 KELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD  163 (454)
T ss_dssp             CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred             cccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence                 235555554321       1111 122 12234688999999998887654

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=93.26  E-value=6  Score=37.85  Aligned_cols=71  Identities=11%  Similarity=0.079  Sum_probs=45.6

Q ss_pred             CeEEEEECCCCCEEEEEeCCCeEEEEEcCCceeEee-------ccCCCCEEEEEeCCC---CCEEEEe---eCCCcEEEE
Q 008496          276 DVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTL-------SKHKGPIFSLKWNKK---GDYLLTG---SCDKTAIVW  342 (563)
Q Consensus       276 ~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~~~~~-------~~h~~~V~~l~~~~~---~~~l~s~---s~D~~v~iw  342 (563)
                      ....|+|.|+|.++++--..|.|++++..+.....+       ....+....|+++|+   +.+|+..   ..++.|.-|
T Consensus        33 ~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R~  112 (347)
T 3das_A           33 SPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVRM  112 (347)
T ss_dssp             SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEEE
T ss_pred             CceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEEE
Confidence            467899999999777765589999998653222211       123456789999995   3455433   234556666


Q ss_pred             ECCC
Q 008496          343 DVKT  346 (563)
Q Consensus       343 d~~~  346 (563)
                      .+..
T Consensus       113 ~~~~  116 (347)
T 3das_A          113 LYDE  116 (347)
T ss_dssp             EBCT
T ss_pred             EeCC
Confidence            5543

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=92.40  E-value=4.6  Score=37.75  Aligned_cols=220  Identities=10%  Similarity=0.074  Sum_probs=101.4

Q ss_pred             CCEEEEeeC----CCcEEEEECCCCceeEEeeecccC-eEEEecCCCceEEEEeC----C-----CeEEEEEcCCCcc--
Q 008496          327 GDYLLTGSC----DKTAIVWDVKTEEWKQQFEFHSGP-TLDVDWRNNVSFATSST----D-----NMIYVCKIGENRP--  390 (563)
Q Consensus       327 ~~~l~s~s~----D~~v~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----d-----~~i~~~~~~~~~~--  390 (563)
                      +..++.|+.    -..+.+||+.+.+|...-...... -..+...++..++.++.    +     +.+++++..+..-  
T Consensus        25 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~  104 (308)
T 1zgk_A           25 RLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSP  104 (308)
T ss_dssp             CCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTTEEEE
T ss_pred             CEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEEECCEEEEECCCcCCCCCCeecceEEEECCCCCeEeE
Confidence            344455542    236788888888776532111110 01122224445555543    2     3467777655431  


Q ss_pred             eeeecCCCcceeEEEECCCCCEEEEEeCC-----CcEEEEeCCCCceeee--ecccCCCEEEEEEccCCCCCCCCCCcEE
Q 008496          391 IKTFAGHQGEVNCVKWDPTGSLLASCSDD-----VTAKIWNMKQDKYVHD--LREHSKEIYTIRWSPTGSGTNNPNQQLI  463 (563)
Q Consensus       391 ~~~~~~h~~~i~~~~~~~~~~~las~s~d-----g~i~iwd~~~~~~~~~--~~~~~~~i~~~~~~p~~~~~~~~~~~~~  463 (563)
                      +..+........++.+  ++++++.|+.+     ..+.+||..+.+....  +......-..+.+  ++         .+
T Consensus       105 ~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~---------~i  171 (308)
T 1zgk_A          105 CAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NR---------LL  171 (308)
T ss_dssp             CCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TT---------EE
T ss_pred             CCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CC---------EE
Confidence            1111111111222333  57777777643     3577888876654321  1100001111111  11         24


Q ss_pred             EEEEeCC-----CeEEEEeCCCCeEEE--EecCCCCCEEEEEEcCCCCEEEEEeCC-----CcEEEEecCCCeeEEEEec
Q 008496          464 LASASFD-----STVKLWDVELGKLLY--SLNGHREPVYSLAFSPTGEYLASGSLD-----KSMHIWSLKEGKIVKTYTG  531 (563)
Q Consensus       464 l~s~s~d-----g~i~iwd~~~~~~~~--~~~~h~~~i~~l~~spdg~~lasgs~d-----g~v~iw~~~~~~~~~~~~~  531 (563)
                      ++.|+.+     ..+.+||+.+.+=..  .+......-..+.+  ++++++.|+.+     ..+.+||+.+.+-...-..
T Consensus       172 yv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~  249 (308)
T 1zgk_A          172 YAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPM  249 (308)
T ss_dssp             EEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCC
T ss_pred             EEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCC
Confidence            4455543     458888887654221  11111111223333  67777777764     4699999987653221111


Q ss_pred             CCC--EEEEEEcCCCCEEEEEECC-----CeEEEEEee
Q 008496          532 NGG--IFEVCWNKEGDKIAACFAN-----HTVCVLDFR  562 (563)
Q Consensus       532 ~~~--i~~l~w~~~g~~la~~~~~-----~~v~v~~~~  562 (563)
                      ...  -..++. -+++.+++|+.+     ..+.+||..
T Consensus       250 p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~  286 (308)
T 1zgk_A          250 KHRRSALGITV-HQGRIYVLGGYDGHTFLDSVECYDPD  286 (308)
T ss_dssp             SSCCBSCEEEE-ETTEEEEECCBCSSCBCCEEEEEETT
T ss_pred             CCCccceEEEE-ECCEEEEEcCcCCCcccceEEEEcCC
Confidence            110  011111 256666666533     356677753

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=91.78  E-value=8.5  Score=36.04  Aligned_cols=171  Identities=10%  Similarity=0.096  Sum_probs=81.4

Q ss_pred             cEEEEECCCCceeEEeeecc---cCeEEEecCCCceEEEEeC----CC-------eEEEEEcCCCcc--eeeecCCCcce
Q 008496          338 TAIVWDVKTEEWKQQFEFHS---GPTLDVDWRNNVSFATSST----DN-------MIYVCKIGENRP--IKTFAGHQGEV  401 (563)
Q Consensus       338 ~v~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~----d~-------~i~~~~~~~~~~--~~~~~~h~~~i  401 (563)
                      .+.+||+.+.+|.. .....   ..-..+...++..++.++.    ++       .+++++..+..=  +..+.......
T Consensus        25 ~~~~yd~~~~~W~~-~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~  103 (318)
T 2woz_A           25 AAVAYDPMENECYL-TALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLF  103 (318)
T ss_dssp             EEEEEETTTTEEEE-EEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSC
T ss_pred             ceEEECCCCCceec-ccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCcccccc
Confidence            47899999988866 22211   1123334455666666662    11       166677654421  11111111111


Q ss_pred             eEEEECCCCCEEEEEeCC-------CcEEEEeCCCCceeeeecccCCCE--EEEEEccCCCCCCCCCCcEEEEEEeC---
Q 008496          402 NCVKWDPTGSLLASCSDD-------VTAKIWNMKQDKYVHDLREHSKEI--YTIRWSPTGSGTNNPNQQLILASASF---  469 (563)
Q Consensus       402 ~~~~~~~~~~~las~s~d-------g~i~iwd~~~~~~~~~~~~~~~~i--~~~~~~p~~~~~~~~~~~~~l~s~s~---  469 (563)
                      .++.+  ++++++.|+.+       ..+.+||..+.+....-. ...+.  .++.. .+        +. +++.|+.   
T Consensus       104 ~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~-~p~~r~~~~~~~-~~--------~~-iyv~GG~~~~  170 (318)
T 2woz_A          104 GLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKN-LPIKVYGHNVIS-HN--------GM-IYCLGGKTDD  170 (318)
T ss_dssp             EEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECC-CSSCEESCEEEE-ET--------TE-EEEECCEESS
T ss_pred             ceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCC-CCCcccccEEEE-EC--------CE-EEEEcCCCCC
Confidence            22223  56777777754       246778887665432110 00000  01111 11        12 3444442   


Q ss_pred             ---CCeEEEEeCCCCeEEEE--ecCCCCCEEEEEEcCCCCEEEEEeCC-----CcEEEEecCCCe
Q 008496          470 ---DSTVKLWDVELGKLLYS--LNGHREPVYSLAFSPTGEYLASGSLD-----KSMHIWSLKEGK  524 (563)
Q Consensus       470 ---dg~i~iwd~~~~~~~~~--~~~h~~~i~~l~~spdg~~lasgs~d-----g~v~iw~~~~~~  524 (563)
                         -..+.+||+.+.+=...  +.........+.+  +++.++.|+.+     ..+.+||+.+.+
T Consensus       171 ~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~  233 (318)
T 2woz_A          171 KKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIH--KGKIVIAGGVTEDGLSASVEAFDLKTNK  233 (318)
T ss_dssp             SCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEEETTEEEEEEEEEETTTCC
T ss_pred             CCccceEEEEcCCCCEEEECCCCCCCcccceEEEE--CCEEEEEcCcCCCCccceEEEEECCCCe
Confidence               23588899887642211  1111111122333  66777777654     357789987764

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=91.75  E-value=7.4  Score=44.36  Aligned_cols=235  Identities=12%  Similarity=0.150  Sum_probs=119.6

Q ss_pred             ECCCCCEEEEEeCCCeEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCC-ceeEEeeecc---
Q 008496          282 WNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTE-EWKQQFEFHS---  357 (563)
Q Consensus       282 ~s~~g~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~-~~~~~~~~~~---  357 (563)
                      .+|..+.||.-. ..++.|++++.+.+..-.....+|.--+|-.....-+.+  +..|.-|++... ...+.|..|.   
T Consensus        73 MnP~~~iiALra-g~~lQiFnl~~k~klks~~~~e~VvfWkWis~~~l~lVT--~~aVyHW~~~~~s~P~k~fdR~~~L~  149 (1630)
T 1xi4_A           73 MNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVT--DNAVYHWSMEGESQPVKMFDRHSSLA  149 (1630)
T ss_pred             cCCCcceEEEec-CCeEEEeehHHhhhhcccccCCCceEEEecCCCeeEEEc--CCeEEEeccCCCCccHHHHhcchhcc
Confidence            455556665554 578999998755432222234577777886554432222  468999998642 2333343332   


Q ss_pred             -cCeEEEecCCCce--EEEE------eCCCeEEEEEcCCCcceeeecCCCcceeEEEEC--C-CCCEEEEEeC---CCcE
Q 008496          358 -GPTLDVDWRNNVS--FATS------STDNMIYVCKIGENRPIKTFAGHQGEVNCVKWD--P-TGSLLASCSD---DVTA  422 (563)
Q Consensus       358 -~~~~~~~~~~~~~--~~~~------~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~--~-~~~~las~s~---dg~i  422 (563)
                       ..++......+..  .++|      ...|.+.+|..... ..+.+.||.+....+...  + ..++++.+..   .+.+
T Consensus       150 ~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~-~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kL  228 (1630)
T 1xi4_A          150 GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKL  228 (1630)
T ss_pred             cCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc-cchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceE
Confidence             2233222222221  1221      13356666666433 234566776655444332  1 1234333322   2577


Q ss_pred             EEEeCCCC-ceeeeecccCCCEEEEEEccCCCCCC------CCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEE
Q 008496          423 KIWNMKQD-KYVHDLREHSKEIYTIRWSPTGSGTN------NPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVY  495 (563)
Q Consensus       423 ~iwd~~~~-~~~~~~~~~~~~i~~~~~~p~~~~~~------~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~  495 (563)
                      +|-++... .-.   .........+-|.|+....+      ++. .-++..-+.-|.|.++|+.+|.+++.-+-...+|.
T Consensus       229 hi~Ei~~~~~~~---~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k-~g~iy~itk~G~~~~~d~~t~~~i~~~ris~~~iF  304 (1630)
T 1xi4_A          229 HIIEVGTPPTGN---QPFPKKAVDVFFPPEAQNDFPVAMQISEK-HDVVFLITKYGYIHLYDLETGTCIYMNRISGETIF  304 (1630)
T ss_pred             EEEecCCCccCC---CCCccccccccCCcccccCcceEEEeccc-cCEEEEEecCceEEEEecccchhhhhccccCCceE
Confidence            88776432 000   11122233444544322111      111 11344455779999999999999887666666776


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEecCCCe
Q 008496          496 SLAFSPTGEYLASGSLDKSMHIWSLKEGK  524 (563)
Q Consensus       496 ~l~~spdg~~lasgs~dg~v~iw~~~~~~  524 (563)
                      ..+.++...-++.....|.|.--.+....
T Consensus       305 ~~~~~~~~~g~~~vnr~G~vl~v~v~~~~  333 (1630)
T 1xi4_A          305 VTAPHEATAGIIGVNRKGQVLSVCVEEEN  333 (1630)
T ss_pred             EeccCCCCCceEEEcCCceEEEEEEccch
Confidence            66655443333434456665555544433

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=91.25  E-value=18  Score=38.76  Aligned_cols=312  Identities=11%  Similarity=0.086  Sum_probs=163.6

Q ss_pred             CceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEEeCC
Q 008496          216 SEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYD  295 (563)
Q Consensus       216 ~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~d  295 (563)
                      ..|.++.-.+++.+.+ |+.+| +..++..++...           .. ............|.++....++..|..|+. 
T Consensus       146 ~~i~~i~~d~~g~lWi-gt~~G-l~~~~~~~~~~~-----------~~-~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-  210 (758)
T 3ott_A          146 NTIYSIIRTKDNQIYV-GTYNG-LCRYIPSNGKFE-----------GI-PLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-  210 (758)
T ss_dssp             SCEEEEEECTTCCEEE-EETTE-EEEEETTTTEEE-----------EE-CCCCCTTCSSCCEEEEEEETTTTEEEEEEE-
T ss_pred             CeEEEEEEcCCCCEEE-EeCCC-HhhCccCCCceE-----------Ee-cCCCccccccceeEEEEEECCCCEEEEEEC-
Confidence            4577888777887665 33444 556665432110           00 000000111235888888877765555554 


Q ss_pred             CeEEEEEcCCceeEeec-cCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeee-------cccCeEEEecCC
Q 008496          296 GQARIWSTNGDLKCTLS-KHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEF-------HSGPTLDVDWRN  367 (563)
Q Consensus       296 g~i~vw~~~~~~~~~~~-~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~-------~~~~~~~~~~~~  367 (563)
                      +-+..++........+. .....|.++.-.++|...+. +. +-+.+++..++.+......       ....+.++.-..
T Consensus       211 ~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWig-T~-~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~  288 (758)
T 3ott_A          211 GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLAG-TD-NGLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQ  288 (758)
T ss_dssp             EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEEE-ET-TEEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECT
T ss_pred             CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEEE-eC-CceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcC
Confidence            45777886544322221 12345788887777765554 43 4578888877654332111       112244444333


Q ss_pred             CceEEEEeCCCeEEEEEcCCCcceeeec-------CCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCc--eeeeec-
Q 008496          368 NVSFATSSTDNMIYVCKIGENRPIKTFA-------GHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDK--YVHDLR-  437 (563)
Q Consensus       368 ~~~~~~~~~d~~i~~~~~~~~~~~~~~~-------~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~--~~~~~~-  437 (563)
                      +..+-.+...| +.++...  .....+.       .....|.++.-..+|.+-+ |+.+| +..++..++.  ....+. 
T Consensus       289 ~g~lWiGT~~G-l~~~~~~--~~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWi-Gt~~G-l~~~~~~~~~~~~~~~~~~  363 (758)
T 3ott_A          289 EHNIWLGTDYG-ISLSRYN--SALQFIPISQITGTGDGNQFYSLFRDSKGFYWF-GGANG-LIRFTDPAGERHDAIWYRM  363 (758)
T ss_dssp             TCCEEEEESSS-EEEECCC--C-CEEEEHHHHSCSCCCCBEEEEEECTTCCEEE-EETTE-EEEESCTTSSCCCCEEECT
T ss_pred             CCCEEEEeCCc-ccccccC--CceeEEecccCCCCCCCceEEEEEEcCCCCEEE-eeCCc-ceeecccccccceeEEecc
Confidence            33344444444 3333221  1111111       1124688888888888654 45555 5556554321  111111 


Q ss_pred             ------ccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEe-cC-----CCCCEEEEEEcCCCCE
Q 008496          438 ------EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSL-NG-----HREPVYSLAFSPTGEY  505 (563)
Q Consensus       438 ------~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~~-----h~~~i~~l~~spdg~~  505 (563)
                            .....|.++.-..++.        +++  |+ ++-|..+|..+++...-. ..     ....|.++...++|.+
T Consensus       364 ~~~~~~l~~~~v~~i~~d~~g~--------lWi--gt-~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~l  432 (758)
T 3ott_A          364 GDKTYPLSHNRIRHIYEDKEQQ--------LWI--AT-DGSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDTAGQL  432 (758)
T ss_dssp             TCSSSCCSCSCEEEEEECTTSC--------EEE--EE-TTEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECTTSEE
T ss_pred             CCcCCCCCCCceEEEEECCCCC--------EEE--Ee-CCcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcCCCCE
Confidence                  0123477776555442        444  44 456899998877654321 11     1245889988888875


Q ss_pred             EEEEeCCCcEEEEecCC------CeeE--EEEec-----CCCEEEEEEcCCCCEEEEEECCCeEEEEEe
Q 008496          506 LASGSLDKSMHIWSLKE------GKIV--KTYTG-----NGGIFEVCWNKEGDKIAACFANHTVCVLDF  561 (563)
Q Consensus       506 lasgs~dg~v~iw~~~~------~~~~--~~~~~-----~~~i~~l~w~~~g~~la~~~~~~~v~v~~~  561 (563)
                      .+ |+..+-|.+++..+      +...  ..+..     ...|.++.-+++|+.-++++.++.+..+|.
T Consensus       433 Wi-gT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~  500 (758)
T 3ott_A          433 WI-STCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDNEGNVWVLLYNNKGIDKINP  500 (758)
T ss_dssp             EE-EESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEEEEEECTTSCEEEEETTCSSEEEEET
T ss_pred             EE-EECCCceEEEccccccccCCcceecccccccccccccceeeeEEEcCCCCEEEEccCCCCcEEEeC
Confidence            55 56555588888642      1221  22321     224889999999986653333445666664

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=90.55  E-value=14  Score=36.36  Aligned_cols=234  Identities=12%  Similarity=0.151  Sum_probs=129.8

Q ss_pred             ECCCCCEEEEEeCCCeEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCC-CceeEEeeeccc--
Q 008496          282 WNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKT-EEWKQQFEFHSG--  358 (563)
Q Consensus       282 ~s~~g~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~-~~~~~~~~~~~~--  358 (563)
                      .+|..+.||.-. ...+.|++++.+.+..-.....+|.--+|-.....-+.  .+..|.-|++.. ....+.|..|..  
T Consensus        73 MnP~~~iiALra-g~~lQiFnle~K~klks~~~~e~VvfWkWis~~~l~lV--T~taVyHWsi~~~s~P~kvFdR~~~L~  149 (494)
T 1bpo_A           73 MNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALV--TDNAVYHWSMEGESQPVKMFDRHSSLA  149 (494)
T ss_dssp             ECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSSCCCEEEEEETTEEEEE--CSSEEEEEESSSSCCCEEEEECCGGGT
T ss_pred             eCCCCcEEEEec-CCeEEEEchHHhhhhcceecCCCceEEEecCCCeEEEE--cCCeeEEecccCCCCchhheecchhcc
Confidence            456666666654 67999999987654433333456777788655433222  246899999864 345556665542  


Q ss_pred             --CeEEEecCCCce-EE-EE--eC----CCeEEEEEcCCCcceeeecCCCcceeEEEECCC---CCEEEEEeCC---CcE
Q 008496          359 --PTLDVDWRNNVS-FA-TS--ST----DNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT---GSLLASCSDD---VTA  422 (563)
Q Consensus       359 --~~~~~~~~~~~~-~~-~~--~~----d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~---~~~las~s~d---g~i  422 (563)
                        .++......+.. ++ ++  ..    .|.+.+|.... +.-+.+.||.+....+...-+   .++++.+...   +.+
T Consensus       150 ~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er-~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kL  228 (494)
T 1bpo_A          150 GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKL  228 (494)
T ss_dssp             TCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTT-CCEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEE
T ss_pred             cceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccc-cccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEE
Confidence              233332222221 22 11  12    24566776654 334667888776655544321   1345545443   678


Q ss_pred             EEEeCCCC-ceeeeecccCCCEEEEEEccCCCCCC------CCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEE
Q 008496          423 KIWNMKQD-KYVHDLREHSKEIYTIRWSPTGSGTN------NPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVY  495 (563)
Q Consensus       423 ~iwd~~~~-~~~~~~~~~~~~i~~~~~~p~~~~~~------~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~  495 (563)
                      +|-++... .-.   .........+-|.|+....+      ++.. -++..-..-|.|.+||+.++.+++.-+-...+|.
T Consensus       229 hi~Ei~~~~~~~---~~f~kk~vdv~fppe~~~DFPvamqvs~ky-gviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF  304 (494)
T 1bpo_A          229 HIIEVGTPPTGN---QPFPKKAVDVFFPPEAQNDFPVAMQISEKH-DVVFLITKYGYIHLYDLETGTCIYMNRISGETIF  304 (494)
T ss_dssp             EEEECSCCCTTC---CCCCCEEEECCCCTTSTTCCEEEEEEETTT-TEEEEEETTSEEEEEETTTCCEEEEEECCSSCEE
T ss_pred             EEEEcCCCccCC---CCccceeeeeeCCcccccCceeEEEecccC-CEEEEEecCceEEEEecccceeeeeecccCCceE
Confidence            88877432 000   01112233333433321110      0011 1344556789999999999999998877777887


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 008496          496 SLAFSPTGEYLASGSLDKSMHIWSLKEG  523 (563)
Q Consensus       496 ~l~~spdg~~lasgs~dg~v~iw~~~~~  523 (563)
                      ..+.+....-++.....|.|.--.+...
T Consensus       305 ~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~  332 (494)
T 1bpo_A          305 VTAPHEATAGIIGVNRKGQVLSVCVEEE  332 (494)
T ss_dssp             EEEEETTTTEEEEEETTCEEEEEEECTT
T ss_pred             EecccCCCCcEEEEccCceEEEEEEccc
Confidence            7777666555555567776655555443

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=89.88  E-value=11  Score=40.19  Aligned_cols=191  Identities=9%  Similarity=0.070  Sum_probs=94.1

Q ss_pred             CCCCEEEEeeCC----CcEEEEECCCCceeEEe-ee-----ccc-CeEEEecC--CCceEEEEeCC------CeEEEEEc
Q 008496          325 KKGDYLLTGSCD----KTAIVWDVKTEEWKQQF-EF-----HSG-PTLDVDWR--NNVSFATSSTD------NMIYVCKI  385 (563)
Q Consensus       325 ~~~~~l~s~s~D----~~v~iwd~~~~~~~~~~-~~-----~~~-~~~~~~~~--~~~~~~~~~~d------~~i~~~~~  385 (563)
                      .++..++.|+.+    ..+.+||+.+.+|...- ..     ... .-..+...  ++..++.++.+      +.+++++.
T Consensus       396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~  475 (695)
T 2zwa_A          396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM  475 (695)
T ss_dssp             CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred             ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence            345566666643    46888999888876643 21     110 01122222  55556665532      24667776


Q ss_pred             CCCc--ceeeecCCCcceeEEEECCCCCEEEEEeCCC--cEEEEeCCCCceeeeec-----ccCCCEEEEEEccCCCCCC
Q 008496          386 GENR--PIKTFAGHQGEVNCVKWDPTGSLLASCSDDV--TAKIWNMKQDKYVHDLR-----EHSKEIYTIRWSPTGSGTN  456 (563)
Q Consensus       386 ~~~~--~~~~~~~h~~~i~~~~~~~~~~~las~s~dg--~i~iwd~~~~~~~~~~~-----~~~~~i~~~~~~p~~~~~~  456 (563)
                      .+..  .+..+......- +++.-.++++++.|+.++  .+.+||..+......-.     .......++.+....    
T Consensus       476 ~t~~W~~~~~~p~~R~~h-~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~----  550 (695)
T 2zwa_A          476 KTREWSMIKSLSHTRFRH-SACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVS----  550 (695)
T ss_dssp             TTTEEEECCCCSBCCBSC-EEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTT----
T ss_pred             CCCcEEECCCCCCCcccc-eEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCC----
Confidence            6532  111111111111 233323788888887655  68899988765432110     000001112222210    


Q ss_pred             CCCCcEEEEEEeC--C-----CeEEEEeCCCCe--------EEEEec-CCCCCEEEEEEcCCCCEEEEEeC--------C
Q 008496          457 NPNQQLILASASF--D-----STVKLWDVELGK--------LLYSLN-GHREPVYSLAFSPTGEYLASGSL--------D  512 (563)
Q Consensus       457 ~~~~~~~l~s~s~--d-----g~i~iwd~~~~~--------~~~~~~-~h~~~i~~l~~spdg~~lasgs~--------d  512 (563)
                         + .+++.|+.  +     +.+.+||+.+.+        .+.... ........+ ...++++++.||.        .
T Consensus       551 ---~-~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~-~~~~~~iyv~GG~~~~~~~~~~  625 (695)
T 2zwa_A          551 ---K-QGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIK-YITPRKLLIVGGTSPSGLFDRT  625 (695)
T ss_dssp             ---T-EEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEE-EEETTEEEEECCBCSSCCCCTT
T ss_pred             ---C-EEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEE-EeCCCEEEEECCccCCCCCCCC
Confidence               1 24445544  2     458889987765        112211 111112223 3333777787774        3


Q ss_pred             CcEEEEecCCCee
Q 008496          513 KSMHIWSLKEGKI  525 (563)
Q Consensus       513 g~v~iw~~~~~~~  525 (563)
                      ..|.+||+.+.+-
T Consensus       626 ~~v~~yd~~t~~W  638 (695)
T 2zwa_A          626 NSIISLDPLSETL  638 (695)
T ss_dssp             TSEEEEETTTTEE
T ss_pred             CeEEEEECCCCeE
Confidence            4699999987754

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=89.75  E-value=6.6  Score=37.50  Aligned_cols=39  Identities=13%  Similarity=0.049  Sum_probs=17.8

Q ss_pred             cEEEEecCCCe--eEEEEecCCCEEEEEEcCCCCEEEEEECC
Q 008496          514 SMHIWSLKEGK--IVKTYTGNGGIFEVCWNKEGDKIAACFAN  553 (563)
Q Consensus       514 ~v~iw~~~~~~--~~~~~~~~~~i~~l~w~~~g~~la~~~~~  553 (563)
                      .+.+||+.+.+  .+..+... .....+..-+++.+++|+.+
T Consensus       286 ~~~~yd~~~~~W~~~~~~p~~-r~~~~~~~~~~~i~v~GG~~  326 (357)
T 2uvk_A          286 STDIHLWHNGKWDKSGELSQG-RAYGVSLPWNNSLLIIGGET  326 (357)
T ss_dssp             CCEEEECC---CEEEEECSSC-CBSSEEEEETTEEEEEEEEC
T ss_pred             eEEEEecCCCceeeCCCCCCC-cccceeEEeCCEEEEEeeeC
Confidence            57889987654  33222211 11111222467777777644

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=89.66  E-value=0.65  Score=47.03  Aligned_cols=90  Identities=13%  Similarity=0.201  Sum_probs=61.2

Q ss_pred             eEEEEeCCC----Ce-EEEEecCCCCCEEEEEEcCCCCEEEEEe-CCCcEEEEecCC------Cee-------EEEEecC
Q 008496          472 TVKLWDVEL----GK-LLYSLNGHREPVYSLAFSPTGEYLASGS-LDKSMHIWSLKE------GKI-------VKTYTGN  532 (563)
Q Consensus       472 ~i~iwd~~~----~~-~~~~~~~h~~~i~~l~~spdg~~lasgs-~dg~v~iw~~~~------~~~-------~~~~~~~  532 (563)
                      .|.+.|.+.    +. .++.+.. ......+..+|||++++.++ .+.+|.|+++.+      +++       +......
T Consensus       299 gv~ViD~~~~~~~~~~~~~~iP~-pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~G  377 (638)
T 3sbq_A          299 KTPVLDGRKKDGKDSKFTRYVPV-PKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELG  377 (638)
T ss_dssp             CCCEEECSCBTTBCCSSEEEEEE-SSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCC
T ss_pred             CeeEEccccccccCCceEEEEeC-CCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCC
Confidence            367777665    22 2222221 12235688999999987655 578999999874      222       3333444


Q ss_pred             CCEEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496          533 GGIFEVCWNKEGDKIAACFANHTVCVLDFR  562 (563)
Q Consensus       533 ~~i~~l~w~~~g~~la~~~~~~~v~v~~~~  562 (563)
                      -+....+|+++|.-..+.+-|.+|+-||+.
T Consensus       378 lGPlHt~Fd~~G~aYTtlfidSqvvkWni~  407 (638)
T 3sbq_A          378 LGPLHTTFDGRGNAYTTLFIDSQVVKWNME  407 (638)
T ss_dssp             SCEEEEEECSSSEEEEEETTTTEEEEEEHH
T ss_pred             CcccEEEECCCCceEeeeeecceEEEEecc
Confidence            567899999999666677899999999974

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=89.13  E-value=26  Score=37.42  Aligned_cols=266  Identities=9%  Similarity=0.065  Sum_probs=145.3

Q ss_pred             CCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCceeEeec--c----CCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCC
Q 008496          274 SKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLS--K----HKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTE  347 (563)
Q Consensus       274 ~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~~~~~~--~----h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~  347 (563)
                      ...|.++....+|.+.+ |+.+ -+..++........+.  .    ....|.++...+++..|..|.. +-+..+|..++
T Consensus       145 ~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~  221 (758)
T 3ott_A          145 NNTIYSIIRTKDNQIYV-GTYN-GLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTG  221 (758)
T ss_dssp             CSCEEEEEECTTCCEEE-EETT-EEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTT
T ss_pred             CCeEEEEEEcCCCCEEE-EeCC-CHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCC
Confidence            35688888888888765 4444 4667776544332221  1    1224888887777765555553 46888998877


Q ss_pred             ceeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecC--------CCcceeEEEECCCCCEEEEEeCC
Q 008496          348 EWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAG--------HQGEVNCVKWDPTGSLLASCSDD  419 (563)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~--------h~~~i~~~~~~~~~~~las~s~d  419 (563)
                      .+..........+.++.-..+..+..+.. +-+++++...... ..+..        ....|.++..+.+|.+- .|+..
T Consensus       222 ~~~~~~~l~~~~i~~i~~d~~g~lWigT~-~Gl~~~~~~~~~~-~~~~~~~~~~~~l~~~~i~~i~~D~~g~lW-iGT~~  298 (758)
T 3ott_A          222 QIKQTEAFHNNSIKSLALDGNGDLLAGTD-NGLYVYHNDTTPL-QHIIHDSRNIQSLTNNIIWNIFADQEHNIW-LGTDY  298 (758)
T ss_dssp             EEEEEEEEEEEEEEEEEECTTCCEEEEET-TEEEEECCTTSCC-EEECCCTTCTTSCSCSCEEEEEECTTCCEE-EEESS
T ss_pred             eEEeccCCCCCeEEEEEEcCCCCEEEEeC-CceeEEecCCCcE-EEEEcCCCCcCcCCcCeEEEEEEcCCCCEE-EEeCC
Confidence            65432222223344554444444544443 4566776554322 22211        12358899888888754 45555


Q ss_pred             CcEEEEeCCCCceeeeec-----ccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCe--EEEEec--C-
Q 008496          420 VTAKIWNMKQDKYVHDLR-----EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK--LLYSLN--G-  489 (563)
Q Consensus       420 g~i~iwd~~~~~~~~~~~-----~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~--~~~~~~--~-  489 (563)
                      | +.++.....-......     .....|.++.-..+|.        +++  |+.+| +..++..+++  ....+.  . 
T Consensus       299 G-l~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~D~~g~--------lWi--Gt~~G-l~~~~~~~~~~~~~~~~~~~~~  366 (758)
T 3ott_A          299 G-ISLSRYNSALQFIPISQITGTGDGNQFYSLFRDSKGF--------YWF--GGANG-LIRFTDPAGERHDAIWYRMGDK  366 (758)
T ss_dssp             S-EEEECCCC-CEEEEHHHHSCSCCCCBEEEEEECTTCC--------EEE--EETTE-EEEESCTTSSCCCCEEECTTCS
T ss_pred             c-ccccccCCceeEEecccCCCCCCCceEEEEEEcCCCC--------EEE--eeCCc-ceeecccccccceeEEeccCCc
Confidence            6 5444322111111110     1123577777655543        344  44455 5566655431  111111  0 


Q ss_pred             ----CCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEE--e-----cCCCEEEEEEcCCCCEEEEEECCCeEEE
Q 008496          490 ----HREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTY--T-----GNGGIFEVCWNKEGDKIAACFANHTVCV  558 (563)
Q Consensus       490 ----h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~--~-----~~~~i~~l~w~~~g~~la~~~~~~~v~v  558 (563)
                          ....|.++.-.++|.+.+ |+. +-|..|+..+++...-.  .     ....|.++.-+++|...+ |..++.+.+
T Consensus       367 ~~~l~~~~v~~i~~d~~g~lWi-gt~-~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gT~~~Gl~~  443 (758)
T 3ott_A          367 TYPLSHNRIRHIYEDKEQQLWI-ATD-GSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDTAGQLWI-STCLGGIFV  443 (758)
T ss_dssp             SSCCSCSCEEEEEECTTSCEEE-EET-TEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECTTSEEEE-EESSSCEEE
T ss_pred             CCCCCCCceEEEEECCCCCEEE-EeC-CcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcCCCCEEE-EECCCceEE
Confidence                123589998888887655 443 45999999887654322  1     123578888888886544 544445666


Q ss_pred             EE
Q 008496          559 LD  560 (563)
Q Consensus       559 ~~  560 (563)
                      +|
T Consensus       444 ~~  445 (758)
T 3ott_A          444 VD  445 (758)
T ss_dssp             EE
T ss_pred             Ec
Confidence            65

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=88.25  E-value=18  Score=38.34  Aligned_cols=148  Identities=12%  Similarity=0.124  Sum_probs=77.8

Q ss_pred             CCCCEEEEEeCC----CeEEEEEcCCceeEeec-c--------CCCCEEEEEeCCCCCEEEEeeCC------CcEEEEEC
Q 008496          284 GEGTLLATGSYD----GQARIWSTNGDLKCTLS-K--------HKGPIFSLKWNKKGDYLLTGSCD------KTAIVWDV  344 (563)
Q Consensus       284 ~~g~~l~sg~~d----g~i~vw~~~~~~~~~~~-~--------h~~~V~~l~~~~~~~~l~s~s~D------~~v~iwd~  344 (563)
                      .++.+++.||.+    ..+.+||........+. .        ....-..+.+..++..++.|+.+      +.+.+||+
T Consensus       396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~  475 (695)
T 2zwa_A          396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM  475 (695)
T ss_dssp             CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred             ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence            467788888764    35777876544322222 1        11111222232266667777654      35789999


Q ss_pred             CCCceeEEeeecccC--eEEEecCCCceEEEEeCCC--eEEEEEcCCCccee--e---ecCCCcceeEEEECCC-CCEEE
Q 008496          345 KTEEWKQQFEFHSGP--TLDVDWRNNVSFATSSTDN--MIYVCKIGENRPIK--T---FAGHQGEVNCVKWDPT-GSLLA  414 (563)
Q Consensus       345 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~d~--~i~~~~~~~~~~~~--~---~~~h~~~i~~~~~~~~-~~~la  414 (563)
                      .+.+|...-......  ...+.+.++..++.++.++  .+++|+..+..=..  .   +........++.+..+ +++++
T Consensus       476 ~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv  555 (695)
T 2zwa_A          476 KTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGII  555 (695)
T ss_dssp             TTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEE
T ss_pred             CCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEE
Confidence            988876542221111  1122223556666665443  67888876543111  0   1111112233555554 67777


Q ss_pred             EEeC--C-----CcEEEEeCCCCc
Q 008496          415 SCSD--D-----VTAKIWNMKQDK  431 (563)
Q Consensus       415 s~s~--d-----g~i~iwd~~~~~  431 (563)
                      .|+.  +     ..+.+||+.+..
T Consensus       556 ~GG~~~~~~~~~~~v~~yd~~~~~  579 (695)
T 2zwa_A          556 LGGGFMDQTTVSDKAIIFKYDAEN  579 (695)
T ss_dssp             ECCBCTTSSCBCCEEEEEEECTTC
T ss_pred             ECCcCCCCCeeeCcEEEEEccCCc
Confidence            7765  2     357888887765

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=87.78  E-value=14  Score=32.65  Aligned_cols=100  Identities=14%  Similarity=0.114  Sum_probs=55.7

Q ss_pred             eeEEEECCCCCEEEEEeCCCcEEEEeCCCCceee------ee-cccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeE
Q 008496          401 VNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVH------DL-REHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTV  473 (563)
Q Consensus       401 i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~------~~-~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i  473 (563)
                      ..++.|+|+|.+.++  .||.|.-++-.+...-.      .+ ..-=..+..|.+.|+|.          |.... |+.+
T Consensus        90 F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~----------Lyav~-dg~l  156 (236)
T 1tl2_A           90 FQFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGY----------LYAVH-GQQF  156 (236)
T ss_dssp             CSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSC----------EEEEE-TTEE
T ss_pred             ceEEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCce----------EEEEe-CCcE
Confidence            478999999999888  45888777653211110      00 00114678899999884          44444 8875


Q ss_pred             EEEeCCCCe------EEEEec-CCCCCEEEEEEcCCCCEEEEEeCCCcE
Q 008496          474 KLWDVELGK------LLYSLN-GHREPVYSLAFSPTGEYLASGSLDKSM  515 (563)
Q Consensus       474 ~iwd~~~~~------~~~~~~-~h~~~i~~l~~spdg~~lasgs~dg~v  515 (563)
                      +-+...++.      ....+. .....-.-+.|+|+|...++-  ++.+
T Consensus       157 yr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~--~g~~  203 (236)
T 1tl2_A          157 YKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ--GGKF  203 (236)
T ss_dssp             EEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE--TTEE
T ss_pred             EecCCCCCCCcccccccceeccCCcceEEEEEECCCCcEEEEe--CCeE
Confidence            433322111      001111 122223446789999877765  6643

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=87.35  E-value=8.2  Score=36.85  Aligned_cols=49  Identities=12%  Similarity=0.165  Sum_probs=26.3

Q ss_pred             CcEEEEECCCCceeEEeeecccC-e-EEEecCCCceEEEEeC------CCeEEEEEc
Q 008496          337 KTAIVWDVKTEEWKQQFEFHSGP-T-LDVDWRNNVSFATSST------DNMIYVCKI  385 (563)
Q Consensus       337 ~~v~iwd~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~------d~~i~~~~~  385 (563)
                      ..+.+||+.+.+|...-...... . ..+...++..++.++.      ...++.+++
T Consensus       168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~  224 (357)
T 2uvk_A          168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDF  224 (357)
T ss_dssp             CEEEEEETTTTEEEEEEECSSCCCBSCEEEEETTEEEEECCEEETTEECCCEEEEEC
T ss_pred             ccEEEEeCCCCcEEECCCCCCCCcccccEEEECCEEEEEeeecCCCcccCceEEEEe
Confidence            57899999998887653322111 1 2222334555555542      234666665

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=87.33  E-value=18  Score=33.34  Aligned_cols=180  Identities=16%  Similarity=0.091  Sum_probs=90.4

Q ss_pred             CeEEEEECCCCCEEEEEeCCCeEEEEEcC--CceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEe
Q 008496          276 DVTTLDWNGEGTLLATGSYDGQARIWSTN--GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQF  353 (563)
Q Consensus       276 ~V~~l~~s~~g~~l~sg~~dg~i~vw~~~--~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~  353 (563)
                      .|..++-.....+++  . ||.+..|-.+  +++-. ...-...|..++....  +.+.-. ||.|..|-..........
T Consensus        64 ~i~~ia~G~~hs~~l--~-~G~v~~wG~n~~Gqlg~-P~~~~~~v~~ia~G~~--hs~al~-~G~v~~wG~n~~gqlg~~  136 (282)
T 3qhy_B           64 GVDAIAAGNYHSLAL--K-DGEVIAWGGNEDGQTTV-PAEARSGVDAIAAGAW--ASYALK-DGKVIAWGDDSDGQTTVP  136 (282)
T ss_dssp             CCCEEEECSSEEEEE--E-TTEEEEEECCTTSTTCC-CGGGSSSEEEEEEETT--EEEEEE-TTEEEEEECCTTSTTSCC
T ss_pred             CEEEEEeCCCEEEEE--E-CCEEEEeeCCCCCCCCC-CcccCCCeEEEECcCC--EEEEEe-CCeEEEecCCCCCcCCCC
Confidence            455665554433333  4 8999999754  22211 1111346777765443  444445 899999965432111111


Q ss_pred             eecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCcee
Q 008496          354 EFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYV  433 (563)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~  433 (563)
                      ......+..+..-....++..  ++.++.|-......+..-..-...|..++......+ +.  .||.+..|-.+....+
T Consensus       137 ~~~~~~i~~i~~G~~~~~~l~--~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~hs~-al--~~G~v~~wG~n~~gql  211 (282)
T 3qhy_B          137 AEAQSGVTALDGGVYTALAVK--NGGVIAWGDNYFGQTTVPAEAQSGVDDVAGGIFHSL-AL--KDGKVIAWGDNRYKQT  211 (282)
T ss_dssp             GGGGSSEEEEEECSSEEEEEE--TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEEE-EE--ETTEEEEEECCTTSTT
T ss_pred             ccCCCCeEEEEcccCEEEEEE--CCEEEEecCCCCCCCCCceecCCCeEEEEecCCEEE-EE--ECCeEEEEECCCCCCC
Confidence            111233555544444444443  789999876543222111111245777776644333 33  5899999976543222


Q ss_pred             eeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCC
Q 008496          434 HDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVE  479 (563)
Q Consensus       434 ~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~  479 (563)
                      ..-......|..++-...          ..++..  ||.|..|-..
T Consensus       212 g~p~~~~~~v~~i~~G~~----------h~~al~--~g~v~~wG~n  245 (282)
T 3qhy_B          212 TVPTEALSGVSAIASGEW----------YSLALK--NGKVIAWGSS  245 (282)
T ss_dssp             CCCGGGGSSCCEEEECSS----------CEEEEE--TTEEEEESTT
T ss_pred             CCCcccCCCceEEEcCCC----------EEEEEE--CCEEEEecCC
Confidence            111111233555543222          123333  8999999654

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=87.07  E-value=26  Score=34.96  Aligned_cols=104  Identities=12%  Similarity=0.084  Sum_probs=57.3

Q ss_pred             CEEEEEeCCCCC-EEEEeeCCCcEEEEECCCCc---eeEEee--ec-------ccCeEEEecCCC-----ceEEEEeC--
Q 008496          317 PIFSLKWNKKGD-YLLTGSCDKTAIVWDVKTEE---WKQQFE--FH-------SGPTLDVDWRNN-----VSFATSST--  376 (563)
Q Consensus       317 ~V~~l~~~~~~~-~l~s~s~D~~v~iwd~~~~~---~~~~~~--~~-------~~~~~~~~~~~~-----~~~~~~~~--  376 (563)
                      .-+.|+|.|+|. .|+.+...|.|++++.....   .+..+.  ..       ....+.+.+.++     ..+++-+.  
T Consensus        15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~   94 (463)
T 2wg3_C           15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQ   94 (463)
T ss_dssp             SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECC
T ss_pred             CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCC
Confidence            347899999996 56666788999999754221   111110  00       223566666553     33343221  


Q ss_pred             C----------CeEEEEEcCCC----------cceeeec--CCCcceeEEEECCCCCEEEEEeCCC
Q 008496          377 D----------NMIYVCKIGEN----------RPIKTFA--GHQGEVNCVKWDPTGSLLASCSDDV  420 (563)
Q Consensus       377 d----------~~i~~~~~~~~----------~~~~~~~--~h~~~i~~~~~~~~~~~las~s~dg  420 (563)
                      +          ..|..+.+...          +.+..+.  ........|+|.|||.+.++.++.+
T Consensus        95 ~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~  160 (463)
T 2wg3_C           95 ERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGM  160 (463)
T ss_dssp             CSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTT
T ss_pred             CCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCC
Confidence            1          24555555421          1122221  1223457899999999988777644

>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}

Probab=86.03  E-value=38  Score=35.89  Aligned_cols=217  Identities=14%  Similarity=0.098  Sum_probs=111.8

Q ss_pred             eCCCCCEEEEe-e---CC-CcEEEEECCCCceeE-EeeecccC--------eEEEecCCCceEEEEe-----------CC
Q 008496          323 WNKKGDYLLTG-S---CD-KTAIVWDVKTEEWKQ-QFEFHSGP--------TLDVDWRNNVSFATSS-----------TD  377 (563)
Q Consensus       323 ~~~~~~~l~s~-s---~D-~~v~iwd~~~~~~~~-~~~~~~~~--------~~~~~~~~~~~~~~~~-----------~d  377 (563)
                      ++|++++++.+ |   +| ..++++|+.+++.+. .|. ....        ...+.|.++..|..+.           ..
T Consensus       137 ~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~-~~~k~~~~~~~~~~~~~W~d~~~~~~~~~~~~~~~~~~~~~  215 (711)
T 4hvt_A          137 CFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFE-PITNSGKLLEGKFTYPTWINKDTIIFNLVLHKNEITSSLYP  215 (711)
T ss_dssp             CSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSC-CBCTTCCBCCEETCCEEEEETTEEEECCCCSTTCBCTTSSB
T ss_pred             cCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcc-cccccccccccccceeeEECCCEEEEEeCCCCCCcCcCCCC
Confidence            78888876542 2   22 368999999988764 222 1100        0233777555554432           12


Q ss_pred             CeEEEEEcCCCc--ceeeecCCCcce-eEEEECCCCC-----EEEEEeCC---CcEEEEeCCC--CceeeeecccCCCEE
Q 008496          378 NMIYVCKIGENR--PIKTFAGHQGEV-NCVKWDPTGS-----LLASCSDD---VTAKIWNMKQ--DKYVHDLREHSKEIY  444 (563)
Q Consensus       378 ~~i~~~~~~~~~--~~~~~~~h~~~i-~~~~~~~~~~-----~las~s~d---g~i~iwd~~~--~~~~~~~~~~~~~i~  444 (563)
                      ..|+.|.+++..  ....|.+....+ ..+..+++++     .+++.+.+   ..+.+.+...  +.. ..+......  
T Consensus       216 ~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~--  292 (711)
T 4hvt_A          216 NSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKL-QKINMPSDA--  292 (711)
T ss_dssp             CEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEE-EECCSCTTC--
T ss_pred             CEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcc-eEeecCCcc--
Confidence            468899988753  344555544433 2445566666     34554422   2344445432  221 222111111  


Q ss_pred             EEEEccCCCCCCCCCCcEEEEE---------EeCCCeEEEEeCCCCe-------EEEE-ec-CCCCCEEEEEEcCCCCEE
Q 008496          445 TIRWSPTGSGTNNPNQQLILAS---------ASFDSTVKLWDVELGK-------LLYS-LN-GHREPVYSLAFSPTGEYL  506 (563)
Q Consensus       445 ~~~~~p~~~~~~~~~~~~~l~s---------~s~dg~i~iwd~~~~~-------~~~~-~~-~h~~~i~~l~~spdg~~l  506 (563)
                      .+.+.+.+        .+++.+         ....+.|...|+.++.       .... +. .....+..+.|..+ .++
T Consensus       293 ~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~  363 (711)
T 4hvt_A          293 TLQGSFKE--------YVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVF  363 (711)
T ss_dssp             EEEEEETT--------EEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEE
T ss_pred             eEeeeECC--------EEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEE
Confidence            11222222        122222         1245677778776421       1112 22 12345778888876 566


Q ss_pred             EEEeCCC--cEEEEecCCCe-eEEE---EecCCCEEEEEEcCCCCEEEEEEC
Q 008496          507 ASGSLDK--SMHIWSLKEGK-IVKT---YTGNGGIFEVCWNKEGDKIAACFA  552 (563)
Q Consensus       507 asgs~dg--~v~iw~~~~~~-~~~~---~~~~~~i~~l~w~~~g~~la~~~~  552 (563)
                      ++...++  .|.++++.+++ .+..   +...+.+..++.+++++.+++.+.
T Consensus       364 ~~~~~~~~~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~s  415 (711)
T 4hvt_A          364 LATYDNVVAKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEALITIE  415 (711)
T ss_dssp             EEEEETTEEEEEEECEETTEECCCEEECCCSTTCEEEEECCTTCSCEEEEEE
T ss_pred             EEEEECCEEEEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCCEEEEEEe
Confidence            7777776  47778776664 1222   233355667777888876665543

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=85.64  E-value=23  Score=32.98  Aligned_cols=139  Identities=8%  Similarity=0.015  Sum_probs=80.3

Q ss_pred             EECCCCCEEEEEeCC--------------CeEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEEEee--CCC--cEEEE
Q 008496          281 DWNGEGTLLATGSYD--------------GQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGS--CDK--TAIVW  342 (563)
Q Consensus       281 ~~s~~g~~l~sg~~d--------------g~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s--~D~--~v~iw  342 (563)
                      -++++|.+|.-+...              ..|+..+.+|.....+....    +..|++++++|+-..  .++  .|..-
T Consensus        59 ~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l~~~~----~~~~s~~g~~Iy~~~~~~~~~~~Iy~~  134 (302)
T 3s25_A           59 YINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLDPDP----CIYASLIGNYIYYLHYDTQTATSLYRI  134 (302)
T ss_dssp             EEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEEEECSC----EEEEEEETTEEEEEEESSSSCEEEEEE
T ss_pred             eEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceEeecCC----ccEEEEeCCEEEEEeecCCCCceEEEE
Confidence            457788887776543              36777788776555554322    236778888888665  334  44444


Q ss_pred             ECCCCceeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCC--
Q 008496          343 DVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDV--  420 (563)
Q Consensus       343 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg--  420 (563)
                      ++..... ..+..+..  ..++|.....+.+......|++.++........+.+   ... ..++|++.+|+-....+  
T Consensus       135 ~~dGs~~-~~lt~~~~--~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~~---~~~-~~~~P~g~~iy~t~~~~~~  207 (302)
T 3s25_A          135 RIDGEEK-KKIKNHYL--FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYDC---NCY-KPVVLDDTNVYYMDVNRDN  207 (302)
T ss_dssp             ETTSCCC-EEEESSCC--CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEECS---CEE-EEEEEETTEEEEEEGGGTT
T ss_pred             ECCCCCe-EEEeCCCc--eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeCC---Ccc-ceeeecCCEEEEEEcCCCc
Confidence            5554332 22322222  345677666666655677899988876654444432   222 23558898887665443  


Q ss_pred             cEEEEeCCCC
Q 008496          421 TAKIWNMKQD  430 (563)
Q Consensus       421 ~i~iwd~~~~  430 (563)
                      .|..-++...
T Consensus       208 ~I~~~~ldG~  217 (302)
T 3s25_A          208 AIVHVNINNP  217 (302)
T ss_dssp             EEEEECSSSC
T ss_pred             EEEEEECCCC
Confidence            3444444443

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=85.21  E-value=2.7  Score=42.62  Aligned_cols=92  Identities=13%  Similarity=0.172  Sum_probs=63.9

Q ss_pred             CCCcEEEEEEeCCCeEEEEeCCC------Ce-------EEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCC-
Q 008496          458 PNQQLILASASFDSTVKLWDVEL------GK-------LLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEG-  523 (563)
Q Consensus       458 ~~~~~~l~s~s~dg~i~iwd~~~------~~-------~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~-  523 (563)
                      |+.+.++++|-.+.++.++|++.      ++       .+....- ...-...+|.++|....|--.|..|.-|++... 
T Consensus       332 PDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~-GlGPlHt~Fd~~G~aYTtlfidSqvvkWni~~a~  410 (638)
T 3sbq_A          332 SDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPEL-GLGPLHTTFDGRGNAYTTLFIDSQVVKWNMEEAV  410 (638)
T ss_dssp             TTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBC-CSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHH
T ss_pred             CCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccC-CCcccEEEECCCCceEeeeeecceEEEEeccHHH
Confidence            44457888888999999999873      11       1223332 234577899999966667778999999999753 


Q ss_pred             ---------eeEEEEecCCCEEEEEE------cCCCCEEEEE
Q 008496          524 ---------KIVKTYTGNGGIFEVCW------NKEGDKIAAC  550 (563)
Q Consensus       524 ---------~~~~~~~~~~~i~~l~w------~~~g~~la~~  550 (563)
                               .++....-+-.+-.+.-      .+||++|++.
T Consensus       411 ~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~l  452 (638)
T 3sbq_A          411 RAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVAL  452 (638)
T ss_dssp             HHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEE
T ss_pred             HHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEe
Confidence                     45666655555555544      7889988876

>1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1

Probab=84.37  E-value=0.28  Score=35.85  Aligned_cols=31  Identities=29%  Similarity=0.402  Sum_probs=28.3

Q ss_pred             cchhhhhHHHHHhcCCceehhccccccCCcc
Q 008496            7 EELNYLVFRYLQESGLLHSAFVLGYEAGINK   37 (563)
Q Consensus         7 ~evN~Li~rYlqE~g~~~sA~~~~~E~~~~~   37 (563)
                      +|||.=|..||+-+||..++-+|..|..++.
T Consensus        11 eEL~kaI~~YL~~~~~~~~~~alr~e~~~~~   41 (88)
T 1uuj_A           11 DELNRAIADYLRSNGYEEAYSVFKKEAELDM   41 (88)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHTTCCC
T ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHHHhcCCC
Confidence            7999999999999999999999999977653

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=83.26  E-value=32  Score=32.73  Aligned_cols=112  Identities=13%  Similarity=0.052  Sum_probs=61.7

Q ss_pred             EecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCC----
Q 008496          210 ILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE----  285 (563)
Q Consensus       210 ~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~----  285 (563)
                      ++...-..-..++|.|+|.+|++-...|.|++++..++..           ..+................|+++|+    
T Consensus        26 ~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~-----------~~v~~~~~v~~~g~~GllGia~~Pdf~~~   94 (347)
T 3das_A           26 TVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRK-----------TELGEVPGVSPSGEGGLLGIALSPDYASD   94 (347)
T ss_dssp             EEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCE-----------EEEEECTTCCCBTTBSEEEEEECTTHHHH
T ss_pred             EeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcE-----------eeecccCceeecCCCCceeeEeccccccC
Confidence            3333345567999999999888876689898887543321           0111111111122356789999995    


Q ss_pred             CCEEEEEe--CCCeEEEEEcCC------c---eeE---ee---ccCCCCEEEEEeCCCCCEEEEee
Q 008496          286 GTLLATGS--YDGQARIWSTNG------D---LKC---TL---SKHKGPIFSLKWNKKGDYLLTGS  334 (563)
Q Consensus       286 g~~l~sg~--~dg~i~vw~~~~------~---~~~---~~---~~h~~~V~~l~~~~~~~~l~s~s  334 (563)
                      +.+.++-+  .++.|.-|...+      .   ...   .+   ..|.  -..|.|.|+|...++.+
T Consensus        95 g~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~--g~~l~fgpDG~Lyvt~G  158 (347)
T 3das_A           95 HMVYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHN--GGRIAFGPDKMLYAGTG  158 (347)
T ss_dssp             CEEEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCC--CCCEEECTTSCEEEECB
T ss_pred             CEEEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCcc--CccccCCCCCCEEEEEC
Confidence            44444322  233444444433      1   111   12   1243  24689999998777644

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=82.70  E-value=31  Score=32.10  Aligned_cols=235  Identities=7%  Similarity=0.009  Sum_probs=117.4

Q ss_pred             CCCCEEEEEe--CCCeEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEEEeeCC--------------CcEEEEECCCC
Q 008496          284 GEGTLLATGS--YDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCD--------------KTAIVWDVKTE  347 (563)
Q Consensus       284 ~~g~~l~sg~--~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D--------------~~v~iwd~~~~  347 (563)
                      .+|..|....  .++.|...+.+|.....+...    .+--++++|.+|+-+...              ..|+..++...
T Consensus        23 ~~g~~iy~~n~~d~~~ly~~~~dg~~~~~l~~~----~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~   98 (302)
T 3s25_A           23 ESDGEVFFSNTNDNGRLYAMNIDGSNIHKLSND----TAMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGH   98 (302)
T ss_dssp             EETTEEEEEEGGGTTEEEEEETTSCSCEEEEEE----EEEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSC
T ss_pred             EeCCEEEEEeCCCCceEEEEcCCCCCCEEccCC----ceeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCC
Confidence            3555665554  245666667777655544432    133458889888766543              35666677665


Q ss_pred             ceeEEeeecccCeEEEecCCCceEEEE---eCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeC-CCcEE
Q 008496          348 EWKQQFEFHSGPTLDVDWRNNVSFATS---STDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD-DVTAK  423 (563)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~-dg~i~  423 (563)
                      +... +  ...+...+....+..+.+.   ..+..|+..++...... .+..+..    .+++|+++.|.-.+. ...|.
T Consensus        99 ~~~~-l--~~~~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~-~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy  170 (302)
T 3s25_A           99 GSTV-L--DPDPCIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKK-KIKNHYL----FTCNTSDRYFYYNNPKNGQLY  170 (302)
T ss_dssp             CCEE-E--ECSCEEEEEEETTEEEEEEESSSSCEEEEEEETTSCCCE-EEESSCC----CCSEEETTEEEEECTTTCCEE
T ss_pred             cceE-e--ecCCccEEEEeCCEEEEEeecCCCCceEEEEECCCCCeE-EEeCCCc----eEeeEECCEEEEEeCCCceEE
Confidence            4322 1  1222223333444444443   34556777777654433 3333322    345678888776655 56777


Q ss_pred             EEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCC-CeEEEEeCCCCeEEEEecCCCCCEEEEEEcCC
Q 008496          424 IWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFD-STVKLWDVELGKLLYSLNGHREPVYSLAFSPT  502 (563)
Q Consensus       424 iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~d-g~i~iwd~~~~~~~~~~~~h~~~i~~l~~spd  502 (563)
                      .-++..+.....+.   +.... .+.|.+.        .+..+-..+ ..|..-++..+. ...+..  ..+  ..|+|+
T Consensus       171 ~~~l~g~~~~~l~~---~~~~~-~~~P~g~--------~iy~t~~~~~~~I~~~~ldG~~-~~~Lt~--~~~--~~~~~~  233 (302)
T 3s25_A          171 RYDTASQSEALFYD---CNCYK-PVVLDDT--------NVYYMDVNRDNAIVHVNINNPN-PVVLTE--ANI--EHYNVY  233 (302)
T ss_dssp             EEETTTTEEEEEEC---SCEEE-EEEEETT--------EEEEEEGGGTTEEEEECSSSCC-CEECSC--SCE--EEEEEE
T ss_pred             EEECCCCCEEEEeC---CCccc-eeeecCC--------EEEEEEcCCCcEEEEEECCCCC-eEEEeC--CCc--ceEEEC
Confidence            77776654332222   22222 3446654        222232222 345555555332 333332  233  348888


Q ss_pred             CCEEEEEeC--CCcEEEEecCCCeeEEEEecCCCEEEEEEcCCCCEEEEEE
Q 008496          503 GEYLASGSL--DKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACF  551 (563)
Q Consensus       503 g~~lasgs~--dg~v~iw~~~~~~~~~~~~~~~~i~~l~w~~~g~~la~~~  551 (563)
                      +.+|.-++.  .+.|..-++..........+  .+.  .+++.+++|....
T Consensus       234 g~~Iy~~~~~~~~~i~~~~~DG~~r~~l~~~--~~~--~i~i~~d~Iy~td  280 (302)
T 3s25_A          234 GSLIFYQRGGDNPALCVVKNDGTGFKELAKG--EFC--NINVTSQYVYFTD  280 (302)
T ss_dssp             TTEEEEEECSSSCEEEEEETTSCCCEEEEES--CEE--EEEECSSEEEEEE
T ss_pred             CCEEEEEECCCCcEEEEEECCCCccEEeeCC--ccc--eEEEeCCEEEEEE
Confidence            988876543  34555555543222222222  222  4455667776654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	563
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	5e-48
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	7e-46
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	9e-37
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	3e-25
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	7e-42
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	4e-35
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-28
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-21
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-15
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-41
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	7e-10
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	2e-36
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	6e-18
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	7e-15
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	1e-33
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	4e-24
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	1e-32
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-25
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	1e-17
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	7e-11
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	4e-07
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	1e-26
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	2e-11
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	5e-06
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	4e-26
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	2e-10
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	1e-25
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	5e-21
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	3e-12
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	3e-11
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	4e-10
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	8e-25
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	2e-23
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	3e-20
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	7e-15
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	1e-24
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	5e-14
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	5e-12
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	6e-10
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	9e-09
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	6e-07
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	7e-04
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	5e-23
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	6e-15
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	2e-22
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	3e-21
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	2e-15
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	6e-11
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	2e-21
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	4e-17
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	7e-08
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	2e-21
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	5e-13
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	2e-09
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	8e-09
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	9e-07
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	5e-06
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	3e-05
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	7e-20
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	4e-11
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	3e-07
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-06
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	6e-19
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	5e-15
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	6e-06
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-18
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	7e-16
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	3e-07
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	3e-05
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	9e-16
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	3e-12
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	7e-08
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	8e-08
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	1e-09
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	2e-08
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	5e-09
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	3e-08
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	4e-08
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	2e-06
d2bgra1	470	b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26,	2e-04
d2hqsa1	269	b.68.4.1 (A:163-431) TolB, C-terminal domain {Esch	2e-04
d1qnia2	441	b.69.3.1 (A:10-450) Nitrous oxide reductase, N-ter	2e-04
d1qnia2	441	b.69.3.1 (A:10-450) Nitrous oxide reductase, N-ter	4e-04

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  167 bits (423), Expect = 5e-48
 Identities = 76/301 (25%), Positives = 136/301 (45%), Gaps = 14/301 (4%)

Query: 274 SKDVTTLDWNGEGTLLATGSYDGQARIWST-NGDLKCTLSKHKGPIFSLKWNKKGDYLLT 332
              VT + ++   +++ + S D   ++W    GD + TL  H   +  + ++  G  L +
Sbjct: 17  RSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLAS 76

Query: 333 GSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDW-RNNVSFATSSTDNMIYVCKIGENRPI 391
            S D T  +WD +  E  +    H      V    N     ++S D  I + ++     +
Sbjct: 77  CSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCV 136

Query: 392 KTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPT 451
           KTF GH+  V  V+ +  G+L+ASCS+D T ++W +   +   +LREH   +  I W+P 
Sbjct: 137 KTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPE 196

Query: 452 GSGTN-----------NPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFS 500
            S ++           +      L S S D T+K+WDV  G  L +L GH   V  + F 
Sbjct: 197 SSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFH 256

Query: 501 PTGEYLASGSLDKSMHIWSLKEGKIVKTYTG-NGGIFEVCWNKEGDKIAACFANHTVCVL 559
             G+++ S + DK++ +W  K  + +KT       +  + ++K    +     + TV V 
Sbjct: 257 SGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 316

Query: 560 D 560
           +
Sbjct: 317 E 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  161 bits (408), Expect = 7e-46
 Identities = 69/329 (20%), Positives = 123/329 (37%), Gaps = 46/329 (13%)

Query: 211 LEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRT 270
           L GH S V    + P  S++ S S D+T ++W    G                + +KG T
Sbjct: 13  LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGD-------------FERTLKGHT 59

Query: 271 NEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYL 330
           +           +    L +  +            +   T+  H   + S+     GD++
Sbjct: 60  DSVQ---DISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHI 116

Query: 331 LTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVS-FATSSTDNMIYVCKIGENR 389
           ++ S DKT  +W+V+T    + F  H      V    + +  A+ S D  + V  +    
Sbjct: 117 VSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKE 176

Query: 390 PIKTFAGHQGEVNCVKW--------------------DPTGSLLASCSDDVTAKIWNMKQ 429
                  H+  V C+ W                       G  L S S D T K+W++  
Sbjct: 177 CKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVST 236

Query: 430 DKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNG 489
              +  L  H   +  + +   G           + S + D T+++WD +  + + +LN 
Sbjct: 237 GMCLMTLVGHDNWVRGVLFHSGGK---------FILSCADDKTLRVWDYKNKRCMKTLNA 287

Query: 490 HREPVYSLAFSPTGEYLASGSLDKSMHIW 518
           H   V SL F  T  Y+ +GS+D+++ +W
Sbjct: 288 HEHFVTSLDFHKTAPYVVTGSVDQTVKVW 316

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  137 bits (344), Expect = 9e-37
 Identities = 63/286 (22%), Positives = 119/286 (41%), Gaps = 31/286 (10%)

Query: 299 RIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSG 358
           + W      K  LS H+ P+  + ++     +++ S D T  VWD +T ++++  + H+ 
Sbjct: 1   KEWIPRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTD 60

Query: 359 PTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKT-FAGHQGEVNCVKWDPTGSLLASCS 417
              D+ + ++     S + +M       +         GH   V+ V   P G  + S S
Sbjct: 61  SVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSAS 120

Query: 418 DDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWD 477
            D T K+W ++    V     H + +  +R +  G+         ++AS S D TV++W 
Sbjct: 121 RDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGT---------LIASCSNDQTVRVWV 171

Query: 478 VELGKLLYSLNGHREPVYSLAF--------------------SPTGEYLASGSLDKSMHI 517
           V   +    L  HR  V  +++                       G +L SGS DK++ +
Sbjct: 172 VATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKM 231

Query: 518 WSLKEGKIVKTYTG-NGGIFEVCWNKEGDKIAACFANHTVCVLDFR 562
           W +  G  + T  G +  +  V ++  G  I +C  + T+ V D++
Sbjct: 232 WDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYK 277

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  104 bits (258), Expect = 3e-25
 Identities = 45/222 (20%), Positives = 75/222 (33%), Gaps = 45/222 (20%)

Query: 208 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNG---GAQNGPLNVLVLK 264
           V    GH   V     +  G+L+AS S D T R+W +A           ++    +    
Sbjct: 136 VKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAP 195

Query: 265 HVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWS-TNGDLKCTLSKHKGPIFSLKW 323
                +  ++    T      G  L +GS D   ++W  + G    TL  H   +  + +
Sbjct: 196 ESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLF 255

Query: 324 NKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVC 383
           +  G ++L+ + DKT  VWD K                                      
Sbjct: 256 HSGGKFILSCADDKTLRVWDYKN------------------------------------- 278

Query: 384 KIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIW 425
                R +KT   H+  V  + +  T   + + S D T K+W
Sbjct: 279 ----KRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 316

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  151 bits (382), Expect = 7e-42
 Identities = 65/317 (20%), Positives = 114/317 (35%), Gaps = 33/317 (10%)

Query: 210 ILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGR 269
            L GH +++ A  W     LL S S D    IW                      +    
Sbjct: 50  TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTT-----------------NKVHA 92

Query: 270 TNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGP----IFSLKWNK 325
              +S  V T  +   G  +A G  D    I++            +        S     
Sbjct: 93  IPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFL 152

Query: 326 KGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSF-ATSSTDNMIYVCK 384
             + ++T S D T  +WD++T +    F  H+G  + +    +     + + D    +  
Sbjct: 153 DDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWD 212

Query: 385 IGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKI--WNMKQDKYVHDLREHSKE 442
           + E    +TF GH+ ++N + + P G+  A+ SDD T ++      Q+   +        
Sbjct: 213 VREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICG 272

Query: 443 IYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPT 502
           I ++ +S +G          +L +   D    +WD         L GH   V  L  +  
Sbjct: 273 ITSVSFSKSGR---------LLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDD 323

Query: 503 GEYLASGSLDKSMHIWS 519
           G  +A+GS D  + IW+
Sbjct: 324 GMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  132 bits (333), Expect = 4e-35
 Identities = 60/315 (19%), Positives = 129/315 (40%), Gaps = 21/315 (6%)

Query: 254 QNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWST-NGDLKCTLS 312
             G + +   + ++G   +    +  + W  +  LL + S DG+  IW +   +    + 
Sbjct: 39  PVGRIQMRTRRTLRGHLAK----IYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIP 94

Query: 313 KHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWK----QQFEFHSGPTLDVDWRNN 368
                + +  +   G+Y+  G  D    ++++KT E      ++   H+G      + ++
Sbjct: 95  LRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD 154

Query: 369 VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMK 428
               TSS D    +  I   +   TF GH G+V  +   P   L  S + D +AK+W+++
Sbjct: 155 NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVR 214

Query: 429 QDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLN 488
           +         H  +I  I + P G+           A+ S D+T +L+D+   + L + +
Sbjct: 215 EGMCRQTFTGHESDINAICFFPNGN---------AFATGSDDATCRLFDLRADQELMTYS 265

Query: 489 GHRE--PVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTG-NGGIFEVCWNKEGD 545
                  + S++FS +G  L +G  D + ++W   +        G +  +  +    +G 
Sbjct: 266 HDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGM 325

Query: 546 KIAACFANHTVCVLD 560
            +A    +  + + +
Sbjct: 326 AVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  114 bits (284), Expect = 2e-28
 Identities = 44/259 (16%), Positives = 84/259 (32%), Gaps = 8/259 (3%)

Query: 307 LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR 366
            + TL  H   I+++ W      L++ S D   I+WD  T          S   +   + 
Sbjct: 47  TRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYA 106

Query: 367 NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWN 426
            + ++      + I      + R        +   +               DD      +
Sbjct: 107 PSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCC-----RFLDDNQIVTSS 161

Query: 427 MKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYS 486
                 + D+    +       +      +      +  S + D++ KLWDV  G    +
Sbjct: 162 GDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQT 221

Query: 487 LNGHREPVYSLAFSPTGEYLASGSLDKSMHI---WSLKEGKIVKTYTGNGGIFEVCWNKE 543
             GH   + ++ F P G   A+GS D +  +    + +E           GI  V ++K 
Sbjct: 222 FTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKS 281

Query: 544 GDKIAACFANHTVCVLDFR 562
           G  + A + +    V D  
Sbjct: 282 GRLLLAGYDDFNCNVWDAL 300

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 93.6 bits (231), Expect = 2e-21
 Identities = 29/137 (21%), Positives = 52/137 (37%), Gaps = 16/137 (11%)

Query: 208 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVK 267
                GH S++ A  + P G+  A+GS D+T R++ +                   + + 
Sbjct: 219 RQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQ---------------ELMT 263

Query: 268 GRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWST-NGDLKCTLSKHKGPIFSLKWNKK 326
              +     +T++ ++  G LL  G  D    +W     D    L+ H   +  L     
Sbjct: 264 YSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDD 323

Query: 327 GDYLLTGSCDKTAIVWD 343
           G  + TGS D    +W+
Sbjct: 324 GMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 76.3 bits (186), Expect = 1e-15
 Identities = 49/212 (23%), Positives = 79/212 (37%), Gaps = 37/212 (17%)

Query: 389 RPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRW 448
           R  +T  GH  ++  + W     LL S S D    IW+      VH +   S  + T  +
Sbjct: 46  RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAY 105

Query: 449 SPTGSGTNNPNQQLILASASF------------------------------------DST 472
           +P+G+         I +  +                                     D+T
Sbjct: 106 APSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTT 165

Query: 473 VKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTG- 531
             LWD+E G+   +  GH   V SL+ +P      SG+ D S  +W ++EG   +T+TG 
Sbjct: 166 CALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGH 225

Query: 532 NGGIFEVCWNKEGDKIAACFANHTVCVLDFRM 563
              I  +C+   G+  A    + T  + D R 
Sbjct: 226 ESDINAICFFPNGNAFATGSDDATCRLFDLRA 257

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  152 bits (383), Expect = 1e-41
 Identities = 66/372 (17%), Positives = 122/372 (32%), Gaps = 25/372 (6%)

Query: 171 VNSKPEENGVLQGEKGPEPMDIATTSASESFEIPNSDVTILEGHTSEVCACAWSPAGSLL 230
           ++   +       ++  +   +   +     ++   ++     HTS VC   +S  G  L
Sbjct: 21  LDLDSQSVPDALKKQTNDYYILYNPALPREIDV---ELHKSLDHTSVVCCVKFSNDGEYL 77

Query: 231 ASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKD-VTTLDWNGEGTLL 289
           A+G  + T +++ ++DG+      +        +++   ++  S   + ++ ++ +G  L
Sbjct: 78  ATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFL 136

Query: 290 ATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEW 349
           ATG+ D   RIW         + +                 L        +         
Sbjct: 137 ATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQ 196

Query: 350 KQQFEFHSGPTLDVDWRNNVS--FATSSTDNMIYVCKIGENR-------PIKTFAGHQGE 400
                        V          A  S D  + V                ++  GH+  
Sbjct: 197 CSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDS 256

Query: 401 VNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTN---- 456
           V  V +   G  + S S D + K+WN++      D +  +     + +            
Sbjct: 257 VYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVAT 316

Query: 457 NPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLA------FSPTGEYLASGS 510
             N + I  S S D  V  WD + G  L  L GHR  V S+A        P     A+GS
Sbjct: 317 TQNDEYI-LSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGS 375

Query: 511 LDKSMHIWSLKE 522
            D    IW  K+
Sbjct: 376 GDCKARIWKYKK 387

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 58.7 bits (140), Expect = 7e-10
 Identities = 30/149 (20%), Positives = 54/149 (36%), Gaps = 26/149 (17%)

Query: 436 LREHSKEIYTIRWSPTGSGT-NNPNQQLILASASFD-STVKLWDVELGKLLYSLNGHREP 493
              HSK I             +   +Q       ++ +  +  DVEL K L     H   
Sbjct: 9   RANHSKPIPPFLLDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSL----DHTSV 64

Query: 494 VYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTG-------------------NGG 534
           V  + FS  GEYLA+G  +K+  ++ + +G +V   +                    +  
Sbjct: 65  VCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLY 123

Query: 535 IFEVCWNKEGDKIAACFANHTVCVLDFRM 563
           I  VC++ +G  +A    +  + + D   
Sbjct: 124 IRSVCFSPDGKFLATGAEDRLIRIWDIEN 152

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  138 bits (346), Expect = 2e-36
 Identities = 60/388 (15%), Positives = 112/388 (28%), Gaps = 59/388 (15%)

Query: 206 SDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKH 265
           +     + H +++ + +     S   S SGD   ++W           +N          
Sbjct: 5   ATANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDN----KLLDNENPKDKSYSHFV 58

Query: 266 VKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGD-----------LKCTLSKH 314
            K   +             E  L+AT S+ G    +    +                   
Sbjct: 59  HKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMK 118

Query: 315 KGPIFSLKWNKKGD-----YLLTGSCDKTAIVWDV-KTEEWKQQFEFHSGPTLD------ 362
           K   ++LKW    D      L+      T  +W      +       +  PTL+      
Sbjct: 119 KHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVE 178

Query: 363 -----------VDWRNNVSFATSSTDNMIYV------CKIGENRPIKTFAGHQGEVNCVK 405
                      VD       AT   +  + +        +       +   +   +  VK
Sbjct: 179 SPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVK 238

Query: 406 WDPTGSLLASCSDD---VTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQL 462
           + P GSLLA   D        ++  +  + +  L   +            S         
Sbjct: 239 FSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFN 298

Query: 463 ----ILASASFDSTVKLWDVELGKLLYSLNGHREPVY----SLAFSPTGEYLASGSLDKS 514
                L SA +D  ++ WDV+  + + +LN H + +      LA    G+ LA   +   
Sbjct: 299 DSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDV 358

Query: 515 MHIWSLKEGKIVKTYTGNGGIFEVCWNK 542
              +  K  +       N  +  VC ++
Sbjct: 359 --KFLKKGWRSGMGADLNESLCCVCLDR 384

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 83.8 bits (205), Expect = 6e-18
 Identities = 43/343 (12%), Positives = 87/343 (25%), Gaps = 65/343 (18%)

Query: 218 VCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDV 277
                 +    L+A+ S       + I             L++L     K      +   
Sbjct: 70  QAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFW--ALKW 127

Query: 278 TTLDWNGEGTLLATGSYDGQARIWSTNGDLKC-------------------TLSKHKGPI 318
              +       L      G   IW  +                        +        
Sbjct: 128 GASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFA 187

Query: 319 FSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDW-------RNNVSF 371
            S+  +++G  + TG  + T  + ++ T      FE       + +              
Sbjct: 188 TSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLL 246

Query: 372 ATSSTDNMIYVCKI----------------GENRPIKTFAGHQGEVNCVKWDPTGSLLAS 415
           A +   N      +                  ++       H   V  + ++ +G  L S
Sbjct: 247 AIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCS 306

Query: 416 CSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKL 475
              D   + W++K  + +  L  H  +I             +      LA         +
Sbjct: 307 AGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGD-----SLAEPG------V 355

Query: 476 WDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIW 518
           +DV+  K         +   S   +   E L    LD+S+  +
Sbjct: 356 FDVKFLK---------KGWRSGMGADLNESLCCVCLDRSIRWF 389

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 74.5 bits (181), Expect = 7e-15
 Identities = 28/208 (13%), Positives = 62/208 (29%), Gaps = 45/208 (21%)

Query: 396 GHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDK------YVHDLREHSKEIYTIRWS 449
            H  ++  V      S   SCS D   K+W+ K           +    H   ++ +   
Sbjct: 12  AHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVL 69

Query: 450 PTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNG----------HREPVYSLAF 499
                  +  +  ++A+ SF   +  + +        +             +   ++L +
Sbjct: 70  QAIE--RDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKW 127

Query: 500 SPTGE-----YLASGSLDKSMHIWSLK-------------------EGKIVKTYTGNGGI 535
             + +      L +  +  + +IW                      +G +    T +   
Sbjct: 128 GASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFA 187

Query: 536 FEVCWNKEGDKIAACFANHTVCVLDFRM 563
             V  ++ G  IA  F N TV + +   
Sbjct: 188 TSVDISERG-LIATGFNNGTVQISELST 214

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  129 bits (323), Expect = 1e-33
 Identities = 68/343 (19%), Positives = 124/343 (36%), Gaps = 43/343 (12%)

Query: 208 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGT------------------- 248
             +L+GH   V  C     G+ + SGS D+T ++W+   G                    
Sbjct: 9   PKVLKGHDDHVITC-LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRD 67

Query: 249 --SNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGD 306
                G+ +  L V   +  +          T    +     + +GS D   R+W     
Sbjct: 68  NIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETG 127

Query: 307 LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR 366
            +C                 G  +++G+ D    VWD +TE      + H+     + + 
Sbjct: 128 -QCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF- 185

Query: 367 NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWN 426
           + +   + S D  I V  +     I T  GHQ   + ++     ++L S + D T KIW+
Sbjct: 186 DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD--NILVSGNADSTVKIWD 243

Query: 427 MKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYS 486
           +K  + +  L+  +K    +                   ++S D TVKLWD++ G+ + +
Sbjct: 244 IKTGQCLQTLQGPNKHQSAVTCLQFNKNFV--------ITSSDDGTVKLWDLKTGEFIRN 295

Query: 487 LN-----GHREPVYSLAFSPTGEYLASGSLDKS----MHIWSL 520
           L      G    V+ +  S T    A GS + +    + +   
Sbjct: 296 LVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDF 338

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  101 bits (251), Expect = 4e-24
 Identities = 61/265 (23%), Positives = 107/265 (40%), Gaps = 21/265 (7%)

Query: 301 WSTNGDLKC--TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSG 358
           W   G+LK    L  H   + +      G+ +++GS D T  VW   T +  +    H+G
Sbjct: 1   WRR-GELKSPKVLKGHDDHVITC-LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTG 58

Query: 359 PTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD 418
                  R+N+   + STD  + V        I T  GH   V C+              
Sbjct: 59  GVWSSQMRDNIII-SGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEK--------- 108

Query: 419 DVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDV 478
               ++ +  +D  +      + +   +      +          + S ++D  VK+WD 
Sbjct: 109 ----RVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDP 164

Query: 479 ELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEV 538
           E    L++L GH   VYSL F   G ++ SGSLD S+ +W ++ G  + T TG+  +   
Sbjct: 165 ETETCLHTLQGHTNRVYSLQFD--GIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLT-S 221

Query: 539 CWNKEGDKIAACFANHTVCVLDFRM 563
               + + + +  A+ TV + D + 
Sbjct: 222 GMELKDNILVSGNADSTVKIWDIKT 246

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  125 bits (314), Expect = 1e-32
 Identities = 39/311 (12%), Positives = 86/311 (27%), Gaps = 27/311 (8%)

Query: 213 GHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNE 272
            H   VCA   S     + +G      ++W I+             + +       R N 
Sbjct: 49  NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPG--------NKSPVSQLDCLNRDNY 99

Query: 273 KSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLT 332
               + +     +G  L  G       IW          ++      +            
Sbjct: 100 ----IRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKV 155

Query: 333 GSCDKTAIVWDVKTEEWK---QQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENR 389
                +     V     +   +QF+ H+     +D  N+ +   +   +           
Sbjct: 156 CFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREG 215

Query: 390 PIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWS 449
                     ++  + + PTG    +   + +            + L  H   + +++++
Sbjct: 216 RQLQQHDFTSQIFSLGYCPTGEW-LAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFA 274

Query: 450 PTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASG 509
             G             S   D+ +  W    G  ++        V S   S   +Y+ +G
Sbjct: 275 YCGK---------WFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTG 324

Query: 510 SLDKSMHIWSL 520
           S DK   ++ +
Sbjct: 325 SGDKKATVYEV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  105 bits (261), Expect = 2e-25
 Identities = 51/345 (14%), Positives = 103/345 (29%), Gaps = 30/345 (8%)

Query: 225 PAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG 284
           PA S   +  G     +    D     G       +  L H         + V  +  + 
Sbjct: 11  PAYSFHVTADGQMQP-VPFPPDALIGPGIPRHARQINTLNH--------GEVVCAVTISN 61

Query: 285 EGTLLATGSYDGQARIWSTNGD------LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKT 338
               + TG   G  ++W  +         +         I S K    G  L+ G    T
Sbjct: 62  PTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEAST 120

Query: 339 AIVWDVKTEEWKQQFEFHS---GPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFA 395
             +WD+     + + E  S            ++    +  +D  I V  +     ++ F 
Sbjct: 121 LSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQ 180

Query: 396 GHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGT 455
           GH    +C+     G+ L +   D         ++       + + +I+++ + PTG   
Sbjct: 181 GHTDGASCIDISNDGTKLWTGGLD-NTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWL 239

Query: 456 NNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSM 515
               +   +     +   K             + H   V SL F+  G++  S   D  +
Sbjct: 240 AVGMESSNVEVLHVNKPDKYQL----------HLHESCVLSLKFAYCGKWFVSTGKDNLL 289

Query: 516 HIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLD 560
           + W    G  +     +  +     + +   I     +    V +
Sbjct: 290 NAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYE 334

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.2 bits (201), Expect = 1e-17
 Identities = 41/268 (15%), Positives = 69/268 (25%), Gaps = 25/268 (9%)

Query: 211 LEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRT 270
                + + +C   P G  L  G   ST  IW +A  T                     T
Sbjct: 93  CLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPR--------------IKAELT 138

Query: 271 NEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYL 330
           +                  +  S    A     N  L      H      +  +  G  L
Sbjct: 139 SSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKL 198

Query: 331 LTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRP 390
            TG  D T   WD++     QQ +F S     + +     +     ++            
Sbjct: 199 WTGGLDNTVRSWDLREGRQLQQHDFTSQIF-SLGYCPTGEWLAVGMESSNVEVLHVNKPD 257

Query: 391 IKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSP 450
                 H+  V  +K+   G    S   D     W       +   +  S  + +   S 
Sbjct: 258 KYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISV 316

Query: 451 TGSGTNNPNQQLILASASFDSTVKLWDV 478
                        + + S D    +++V
Sbjct: 317 DDK---------YIVTGSGDKKATVYEV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.4 bits (147), Expect = 7e-11
 Identities = 18/152 (11%), Positives = 35/152 (23%), Gaps = 16/152 (10%)

Query: 417 SDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLW 476
             D        +  + ++ L  H + +  +  S              + +      VK+W
Sbjct: 29  PPDALIGPGIPRHARQINTL-NHGEVVCAVTISNPTR---------HVYTGG-KGCVKVW 77

Query: 477 DVELGK-----LLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTG 531
           D+                    + S    P G  L  G    ++ IW L           
Sbjct: 78  DISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAEL 137

Query: 532 NGGIFEVCWNKEGDKIAACFANHTVCVLDFRM 563
                             CF+  +   +    
Sbjct: 138 TSSAPACYALAISPDSKVCFSCCSDGNIAVWD 169

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.8 bits (117), Expect = 4e-07
 Identities = 11/56 (19%), Positives = 20/56 (35%), Gaps = 3/56 (5%)

Query: 192 IATTSASES---FEIPNSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTI 244
             +T        +  P          +S V +C  S     + +GSGD  A ++ +
Sbjct: 280 FVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score =  109 bits (272), Expect = 1e-26
 Identities = 32/349 (9%), Positives = 77/349 (22%), Gaps = 27/349 (7%)

Query: 192 IATTSASESFEIPNSDVTILE-GHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSN 250
           IA  S  ++F    S   +L+      +          +           +      T  
Sbjct: 18  IAFVSRGQAFIQDVSGTYVLKVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGK 77

Query: 251 GGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCT 310
                  L      +V     +++     +  +    +           I  +   +   
Sbjct: 78  AEKFEENLG-----NVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITD 132

Query: 311 LSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVS 370
            +      F             G   +   V+D++  +       +S         ++ +
Sbjct: 133 FTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKN 192

Query: 371 FATSSTDNMIYV-------CKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAK 423
               S  ++                          G  N  K  P      +   D+   
Sbjct: 193 LYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDM 252

Query: 424 IWNMKQDKYVHDLRE----HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVE 479
                                  I        G              A     +  +DV+
Sbjct: 253 YKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEF------AAYYQGAPEKGVLLKYDVK 306

Query: 480 LGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKT 528
             K+       +  +  L  S   + +     D  ++ + L++ +  +T
Sbjct: 307 TRKV----TEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERT 351

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 63.0 bits (151), Expect = 2e-11
 Identities = 13/163 (7%), Positives = 36/163 (22%), Gaps = 21/163 (12%)

Query: 204 PNSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVL 263
             S   ++             P      +G  D        +    + G           
Sbjct: 216 VVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDY--------- 266

Query: 264 KHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKW 323
             +           +                 G    +         +++ K  +  L+ 
Sbjct: 267 -RMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKT---RKVTEVKNNLTDLRL 322

Query: 324 NKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR 366
           +     ++    D     + ++  E ++        T++ D R
Sbjct: 323 SADRKTVMVRKDDGKIYTFPLEKPEDER--------TVETDKR 357

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 46.8 bits (109), Expect = 5e-06
 Identities = 3/64 (4%), Positives = 10/64 (15%)

Query: 186 GPEPMDIATTSASESFEIPNSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIA 245
           G                  +     +    + +     S     +     D     + + 
Sbjct: 285 GEFAAYYQGAPEKGVLLKYDVKTRKVTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLE 344

Query: 246 DGTS 249
               
Sbjct: 345 KPED 348

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  106 bits (265), Expect = 4e-26
 Identities = 47/329 (14%), Positives = 91/329 (27%), Gaps = 41/329 (12%)

Query: 214 HTSEVCACAWSPAGSLLASGSGDSTA-RIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNE 272
             +     ++ P  + +A   G S   R     D                +  V   T  
Sbjct: 16  QRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSK--------------VPPVVQFTGH 61

Query: 273 KSKDVTTLDW--NGEGTLLATGSYDGQARIWSTNGDL---------KCTLSKHKGPIFSL 321
            S  VTT+ +        L +G   G+  +W    D          K       GPI  +
Sbjct: 62  GSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDI 121

Query: 322 KWNKKGDYLLTGSC--DKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNN-----VSFATS 374
            W+ +G  L       D   +     +     +   HS        + +     ++    
Sbjct: 122 SWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDD 181

Query: 375 STDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVH 434
            +           +   +T       V  V++ P                    +     
Sbjct: 182 GSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFL 241

Query: 435 DLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPV 494
              E  +E             +        A+   D+T+++WDV   K +      ++ +
Sbjct: 242 KYIEDDQEPVQGGIFALSWLDSQ-----KFATVGADATIRVWDVTTSKCVQKWTLDKQQL 296

Query: 495 Y--SLAFSPTGE-YLASGSLDKSMHIWSL 520
               +    TG   + S SLD +++ + L
Sbjct: 297 GNQQVGVVATGNGRIISLSLDGTLNFYEL 325

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 59.9 bits (143), Expect = 2e-10
 Identities = 21/181 (11%), Positives = 43/181 (23%), Gaps = 19/181 (10%)

Query: 395 AGHQGEVNCVKWDPTGSLLASCS-DDVTAKIWNMKQDKY--VHDLREH-SKEIYTIRWSP 450
           +  +     + +DPT + +A         +  +    K   V     H S  + T+++SP
Sbjct: 14  STQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSP 73

Query: 451 TGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLN--------GHREPVYSLAFSPT 502
                        L S      V +W     K   S+             P+  +++   
Sbjct: 74  IKGSQ-------YLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFE 126

Query: 503 GEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLDFR 562
           G  L      +      +           +G    +                        
Sbjct: 127 GRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVF 186

Query: 563 M 563
            
Sbjct: 187 Y 187

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  106 bits (263), Expect = 1e-25
 Identities = 32/333 (9%), Positives = 79/333 (23%), Gaps = 35/333 (10%)

Query: 207 DVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHV 266
            V I +     +      P+ SLL   S D +  ++       N            L   
Sbjct: 3   IVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNV----------DLLQS 52

Query: 267 KGRTNEKSKDVTTLDWNG-EGTLLATGSYDGQARIW--STNGDLKCTLSKHKGPIFSLKW 323
               +     +   ++       +  G+  G+        +   +   +           
Sbjct: 53  LRYKHP----LLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRIC 108

Query: 324 NKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSST------- 376
               D L+  S D    V D +          +             +  T+S+       
Sbjct: 109 KYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMN 168

Query: 377 DNMIYVCKIGENRPIKTFAGHQG----EVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKY 432
           ++ +   ++             G      +           A  S D    +        
Sbjct: 169 NSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGD 228

Query: 433 VHDLREHSKEIYTIRWSPTGSGTNNPN------QQLILASASFDSTVKLWDVELGKLLYS 486
            ++  +              +     N      +   L +A  D  +  W+++  K + +
Sbjct: 229 DYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKN 288

Query: 487 LNGHREPVYSLAFSPTGEYLASGSLDKSMHIWS 519
                     +  + +   L   + D +    +
Sbjct: 289 FAKF-NEDSVVKIACSDNILCLATSDDTFKTNA 320

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 92.2 bits (227), Expect = 5e-21
 Identities = 42/313 (13%), Positives = 91/313 (29%), Gaps = 33/313 (10%)

Query: 274 SKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKC----TLSKHKGPIFSLKWNKKGDY 329
              ++ +      +LL   S+DG   ++  +   K        ++K P+    +    D 
Sbjct: 11  KDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDL 70

Query: 330 LLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENR 389
            +     +  I+          Q   ++   L +              +   + ++ + R
Sbjct: 71  QIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPR 130

Query: 390 PIKTFAGHQGEVNCVKWDPT---------GSLLASCSDDVTAKIWNMKQDKYVHDLREHS 440
                      +N                 S L    ++   + + +   +  +   E S
Sbjct: 131 NYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEES 190

Query: 441 KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSL------------- 487
              Y IR          P +Q   A +S D  V +   +     Y+              
Sbjct: 191 GLKYQIRDV-----ALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNL 245

Query: 488 --NGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGD 545
                  PV S+ FSP  ++L +   D  +  W+L+  K +K +        V      +
Sbjct: 246 KDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDN 305

Query: 546 KIAACFANHTVCV 558
            +    ++ T   
Sbjct: 306 ILCLATSDDTFKT 318

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 65.6 bits (158), Expect = 3e-12
 Identities = 35/306 (11%), Positives = 79/306 (25%), Gaps = 44/306 (14%)

Query: 213 GHTSEVCACAWSP-AGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTN 271
            +   +  C +       +  G+         +    S     N   N+ + +  K   +
Sbjct: 54  RYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDD 113

Query: 272 EKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLL 331
           +                      D +              +  K        +     L+
Sbjct: 114 KLIAASWDGLIE---------VIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLI 164

Query: 332 TGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR-----NNVSFATSSTDNMIYV---- 382
            G  +     + +   E        SG    +            +A SS D  + V    
Sbjct: 165 VGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFD 224

Query: 383 -----------CKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDK 431
                           +R           VN +++ P    L +   D     WN++  K
Sbjct: 225 DQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRK 284

Query: 432 YVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHR 491
            + +  + + E   ++ + + +         IL  A+ D T K        +  ++  + 
Sbjct: 285 KIKNFAKFN-EDSVVKIACSDN---------ILCLATSDDTFKTN----AAIDQTIELNA 330

Query: 492 EPVYSL 497
             +Y +
Sbjct: 331 SSIYII 336

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 62.6 bits (150), Expect = 3e-11
 Identities = 7/86 (8%), Positives = 26/86 (30%), Gaps = 4/86 (4%)

Query: 482 KLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSL----KEGKIVKTYTGNGGIFE 537
           +++      ++ +  +   P+   L   S D S+ ++      K   ++++      +  
Sbjct: 2   QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLC 61

Query: 538 VCWNKEGDKIAACFANHTVCVLDFRM 563
             +    D            +    +
Sbjct: 62  CNFIDNTDLQIYVGTVQGEILKVDLI 87

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 59.1 bits (141), Expect = 4e-10
 Identities = 9/68 (13%), Positives = 23/68 (33%), Gaps = 3/68 (4%)

Query: 389 RPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLR---EHSKEIYT 445
           + ++     +  ++ +K  P+ SLL   S D +  ++         DL     +   +  
Sbjct: 2   QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLC 61

Query: 446 IRWSPTGS 453
             +     
Sbjct: 62  CNFIDNTD 69

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  104 bits (258), Expect = 8e-25
 Identities = 45/274 (16%), Positives = 89/274 (32%), Gaps = 20/274 (7%)

Query: 277 VTTLDWNGEGTLLATGSYDGQARIWSTNGD---LKCTLSKHKGPIFSLKWNKKGDYLLTG 333
           ++   WN + T +A    + +  I+  +G+       L +H G +  + W    + ++T 
Sbjct: 10  ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTC 69

Query: 334 SCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKI-------G 386
             D+ A VW +K   WK               R   +    +  +   V  I        
Sbjct: 70  GTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEND 129

Query: 387 ENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTI 446
                      +  V  + W P   LLA+ S D   +I++    +               
Sbjct: 130 WWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMP 189

Query: 447 RWSPTGSGTNNPN---------QQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSL 497
                   +++               +A  S DSTV L D +    + +L     P+ ++
Sbjct: 190 FGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAV 249

Query: 498 AFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTG 531
            F      +A+G  D    +++        ++ G
Sbjct: 250 TFITESSLVAAGH-DCFPVLFTYDSAAGKLSFGG 282

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score =   99 bits (247), Expect = 2e-23
 Identities = 44/379 (11%), Positives = 92/379 (24%), Gaps = 55/379 (14%)

Query: 214 HTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEK 273
               +   AW+   + +A    +    I+  +            + V  LK   G+    
Sbjct: 6   LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNK--------WVQVHELKEHNGQ---- 53

Query: 274 SKDVTTLDWNGEGTLLATGSYDGQARIWSTNGD--------------------------L 307
              VT +DW  +   + T   D  A +W+  G                            
Sbjct: 54  ---VTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKF 110

Query: 308 KCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN 367
                     I   +                + V  +            S       +  
Sbjct: 111 AVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSA 170

Query: 368 NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNM 427
            +           +  K+     +   +   G V+ V +   GS +A  S D T  + + 
Sbjct: 171 YIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADA 230

Query: 428 KQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSL 487
            +   V  L   +  +  + +    S         ++A+   D    L+  +      S 
Sbjct: 231 DKKMAVATLASETLPLLAVTFITESS---------LVAAGH-DCFPVLFTYDSAAGKLSF 280

Query: 488 NGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGD-- 545
            G  +     +           +LDK                     + ++     G   
Sbjct: 281 GGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAK 340

Query: 546 --KIAACFANHTVCVLDFR 562
             +      +  + + D R
Sbjct: 341 CSQFCTTGMDGGMSIWDVR 359

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 90.3 bits (222), Expect = 3e-20
 Identities = 41/336 (12%), Positives = 92/336 (27%), Gaps = 36/336 (10%)

Query: 208 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADG--------TSNGGAQNGPLN 259
           V  L+ H  +V    W+P  + + +   D  A +WT+                A      
Sbjct: 44  VHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRW 103

Query: 260 VLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIF 319
               K     +  +   +   +   +  +        ++ + S +      L       F
Sbjct: 104 APNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDF 163

Query: 320 SLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSF-ATSSTDN 378
             +        +      T     +   E   +     G    V +  N S  A  S D+
Sbjct: 164 KCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDS 223

Query: 379 MIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLRE 438
            + +    +   + T A     +  V +    SL+A+  D     ++             
Sbjct: 224 TVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGHDCFP-VLFTYD---------- 272

Query: 439 HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG------KLLYSLNGHRE 492
                 +     +  G  +  +Q      +     +  D +              + H+ 
Sbjct: 273 ------SAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKN 326

Query: 493 PVYSLAFSPTGEY----LASGSLDKSMHIWSLKEGK 524
            V  ++    G+       +  +D  M IW ++  +
Sbjct: 327 SVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE 362

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 74.1 bits (180), Expect = 7e-15
 Identities = 46/273 (16%), Positives = 84/273 (30%), Gaps = 28/273 (10%)

Query: 312 SKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEF--HSGPTLDVDW-RNN 368
           S    PI    WNK    +     +    +++    +W Q  E   H+G    VDW  ++
Sbjct: 4   SFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDS 63

Query: 369 VSFATSSTDNMIYV--CKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWN 426
               T  TD   YV   K    +P            CV+W P     A  S      I  
Sbjct: 64  NRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICY 123

Query: 427 MKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLL-- 484
            +Q+      +   K I +   S      +     ++LA+ S D   +++   + ++   
Sbjct: 124 FEQENDWWVCKHIKKPIRSTVLSL-----DWHPNSVLLAAGSCDFKCRIFSAYIKEVEER 178

Query: 485 ----------------YSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKT 528
                           +  +     V+ + FS  G  +A  S D ++ +    +   V T
Sbjct: 179 PAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVAT 238

Query: 529 YTGNGGIFEVCWNKEGDKIAACFANHTVCVLDF 561
                             + A   +    +  +
Sbjct: 239 LASETLPLLAVTFITESSLVAAGHDCFPVLFTY 271

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score =  102 bits (253), Expect = 1e-24
 Identities = 32/313 (10%), Positives = 81/313 (25%), Gaps = 24/313 (7%)

Query: 210 ILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGR 269
           +  GH   + A + S  G  L S   +     W I+ G            V    H    
Sbjct: 7   VRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGI--------SNRVFPDVH---- 54

Query: 270 TNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDY 329
               +  +T +    +G L      D    + +    +  + +                 
Sbjct: 55  ----ATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSAD 110

Query: 330 LLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENR 389
                      +      +  +    ++   + +               +      G + 
Sbjct: 111 GDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASV 170

Query: 390 PIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWS 449
                  H  E+  V +   G+ L +         +++  +  +      +     +   
Sbjct: 171 SEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVAC- 229

Query: 450 PTGSGTNNPNQQLILASASFDSTVKLWDVELGKL--LYSLNGHREPVYSLAFSPTGEYLA 507
                 +     + LA+ S D++V +W++       +     H     +         + 
Sbjct: 230 -----VSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIV 284

Query: 508 SGSLDKSMHIWSL 520
           S   D ++  W++
Sbjct: 285 SAGQDSNIKFWNV 297

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 70.8 bits (171), Expect = 5e-14
 Identities = 33/292 (11%), Positives = 79/292 (27%), Gaps = 12/292 (4%)

Query: 274 SKDVTTLDWNGEGTLLATGSYDGQARIWST-NGDLKCTLSK-HKGPIFSLKWNKKGDYLL 331
           +K +T L  + +G  L +   +G    W    G         H   I  +K   KGD   
Sbjct: 12  NKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFT 71

Query: 332 TGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPI 391
               D   +V    +     +   +   +  +    +     +      ++      +  
Sbjct: 72  VSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLT 131

Query: 392 KTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPT 451
           +    +      +  D     +      V     +      V  +   ++       +  
Sbjct: 132 EVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNG 191

Query: 452 GSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSL 511
                    + ++  +  ++              S   H   V  +++SP    LA+GSL
Sbjct: 192 AFLVATDQSRKVIPYSVANNFELAHT-------NSWTFHTAKVACVSWSPDNVRLATGSL 244

Query: 512 DKSMHIWSLKEGKIVKTYTGNGG---IFEVCWNKEGDKIAACFANHTVCVLD 560
           D S+ +W++ +                           I +   +  +   +
Sbjct: 245 DNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWN 296

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 64.6 bits (155), Expect = 5e-12
 Identities = 12/64 (18%), Positives = 25/64 (39%), Gaps = 2/64 (3%)

Query: 480 LGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTG--NGGIFE 537
           LG +     GH + + +L+ S  G+ L S   +  ++ W +  G   + +       I  
Sbjct: 1   LGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITG 60

Query: 538 VCWN 541
           +   
Sbjct: 61  IKTT 64

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 58.5 bits (139), Expect = 6e-10
 Identities = 9/59 (15%), Positives = 18/59 (30%), Gaps = 1/59 (1%)

Query: 391 IKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLRE-HSKEIYTIRW 448
            +   GH   +  +     G  L S   +     W++          + H+  I  I+ 
Sbjct: 5   DQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKT 63

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 54.6 bits (129), Expect = 9e-09
 Identities = 15/89 (16%), Positives = 27/89 (30%), Gaps = 10/89 (11%)

Query: 436 LREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSL-NGHREPV 494
              H+K I  +  S  G           L SA  +  +  WD+  G       + H   +
Sbjct: 8   RYGHNKAITALSSSADGK---------TLFSADAEGHINSWDISTGISNRVFPDVHATMI 58

Query: 495 YSLAFSPTGEYLASGSLDKSMHIWSLKEG 523
             +  +  G+       D    + +   G
Sbjct: 59  TGIKTTSKGDLFTVSWDDHLKVVPAGGSG 87

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 49.2 bits (115), Expect = 6e-07
 Identities = 39/275 (14%), Positives = 72/275 (26%), Gaps = 31/275 (11%)

Query: 209 TILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKG 268
              + H + +     +  G L      D    +     G               +   K 
Sbjct: 49  VFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSG---------------VDSSKA 93

Query: 269 RTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGD 328
             N+ S     L  + +G +     Y   A               +     +L  +K+  
Sbjct: 94  VANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKL--TEVPISYNSSCVALSNDKQFV 151

Query: 329 YLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGEN 388
            +               +    +     +  T      N      +     +    +  N
Sbjct: 152 AVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANN 211

Query: 389 R---PIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMK--QDKYVHDLREHSKEI 443
                  ++  H  +V CV W P    LA+ S D +  +WNM    D  +     H+   
Sbjct: 212 FELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSS 271

Query: 444 YTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDV 478
                    +          + SA  DS +K W+V
Sbjct: 272 VNSVIWLNET---------TIVSAGQDSNIKFWNV 297

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 39.6 bits (90), Expect = 7e-04
 Identities = 6/37 (16%), Positives = 11/37 (29%)

Query: 208 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTI 244
           + I   H             + + S   DS  + W +
Sbjct: 261 IIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNV 297

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 98.4 bits (243), Expect = 5e-23
 Identities = 53/367 (14%), Positives = 111/367 (30%), Gaps = 75/367 (20%)

Query: 209 TILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKG 268
           T L GH + V  C      + + +G+ D   R++   +                L  + G
Sbjct: 6   TTLRGHMTSVITC-LQFEDNYVITGADDKMIRVYDSINKK-------------FLLQLSG 51

Query: 269 RTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGP--IFSLKWNKK 326
                   V  L +   G L++  +           G        H        +   K 
Sbjct: 52  HDGG----VWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKN 107

Query: 327 GDYLLTGSCDKTAIVWDVKTEE----------------------WKQQFEFHSGPTLDVD 364
             Y++TGS D T  VW +  E                       +          ++   
Sbjct: 108 IKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV 167

Query: 365 WRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKI 424
             +     + S DN + V  + + + +   +GH   +    +D       S S D T +I
Sbjct: 168 SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRI 227

Query: 425 WNMKQDKYVHD------------------------------LREHSKEIYTIRWSPTGSG 454
           W+++  + ++                                       ++   +   + 
Sbjct: 228 WDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAI 287

Query: 455 TNNPNQQLILASASFDSTVKLWDVELGKLLYS-LNGHREPVYSLAFSPTGEYLASGSLDK 513
           T       IL S S ++   ++++  GKL+++ +    + ++S+ F      +A+   D 
Sbjct: 288 TTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKT-LVAAVEKDG 345

Query: 514 SMHIWSL 520
              +  L
Sbjct: 346 QSFLEIL 352

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 74.2 bits (180), Expect = 6e-15
 Identities = 56/271 (20%), Positives = 105/271 (38%), Gaps = 17/271 (6%)

Query: 308 KCTLSKHKGPIFS-LKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR 366
           + TL  H   + + L++    +Y++TG+ DK   V+D   +++  Q   H G    + + 
Sbjct: 5   RTTLRGHMTSVITCLQFE--DNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYA 62

Query: 367 NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGE--VNCVKWDPTGSLLASCSDDVTAKI 424
           +     + STD  + V  I +      F GH        +        + + S D T  +
Sbjct: 63  HGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHV 122

Query: 425 WNMKQDKYVHDLREHSKEIYTIRWSP------------TGSGTNNPNQQLILASASFDST 472
           W + ++  V D  E                          S         I+ S S+D+T
Sbjct: 123 WKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNT 182

Query: 473 VKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGN 532
           + +WDV   K LY L+GH + +YS  +    +   S S+D ++ IW L+ G+++ T  G+
Sbjct: 183 LIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGH 242

Query: 533 GGIFEVCWNKEGDKIAACFANHTVCVLDFRM 563
             +  +    +   ++A              
Sbjct: 243 TALVGLLRLSDKFLVSAAADGSIRGWDANDY 273

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 95.7 bits (236), Expect = 2e-22
 Identities = 51/320 (15%), Positives = 104/320 (32%), Gaps = 44/320 (13%)

Query: 208 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVK 267
           +      +  V    +      + SG  D+T +IW                     + + 
Sbjct: 8   IHCRSETSKGVYCLQYD--DQKIVSGLRDNTIKIWDKNTLE-------------CKRILT 52

Query: 268 GRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKG 327
           G T      V  L ++    +  +     +    +T   L   +   +  +     N   
Sbjct: 53  GHTGS----VLCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMM 108

Query: 328 DYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGE 387
                        +        ++    H      VD+ ++    ++S D  I V     
Sbjct: 109 VTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF-DDKYIVSASGDRTIKVWNTST 167

Query: 388 NRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIR 447
              ++T  GH+  + C+++     L+ S S D T ++W+++    +  L  H + +  IR
Sbjct: 168 CEFVRTLNGHKRGIACLQYRDR--LVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIR 225

Query: 448 WSPTGSGTNNPNQQLILASASFDSTVKLWDVELG---------KLLYSLNGHREPVYSLA 498
           +               + S ++D  +K+WD+              L +L  H   V+ L 
Sbjct: 226 F-----------DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQ 274

Query: 499 FSPTGEYLASGSLDKSMHIW 518
           F      + S S D ++ IW
Sbjct: 275 FDEF--QIVSSSHDDTILIW 292

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 91.8 bits (226), Expect = 3e-21
 Identities = 40/253 (15%), Positives = 89/253 (35%), Gaps = 16/253 (6%)

Query: 310 TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNV 369
             S+    ++ L+++     +++G  D T  +WD  T E K+    H+G  L + +   V
Sbjct: 10  CRSETSKGVYCLQYD--DQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERV 67

Query: 370 SFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQ 429
               SS   +                  +  ++    +      +         + +   
Sbjct: 68  IITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTD 127

Query: 430 DKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNG 489
                 L  H   +  + +               + SAS D T+K+W+    + + +LNG
Sbjct: 128 ITLRRVLVGHRAAVNVVDFDDKY-----------IVSASGDRTIKVWNTSTCEFVRTLNG 176

Query: 490 HREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAA 549
           H+  +  L +      + SGS D ++ +W ++ G  ++   G+  +          +I +
Sbjct: 177 HKRGIACLQYRDR--LVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDN-KRIVS 233

Query: 550 CFANHTVCVLDFR 562
              +  + V D  
Sbjct: 234 GAYDGKIKVWDLV 246

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.5 bits (181), Expect = 2e-15
 Identities = 33/144 (22%), Positives = 58/144 (40%), Gaps = 15/144 (10%)

Query: 293 SYDGQARIWST-NGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQ 351
           S D   ++W+T   +   TL+ HK  I  L++      +++GS D T  +WD++     +
Sbjct: 155 SGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLR 212

Query: 352 QFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKI---------GENRPIKTFAGHQGEVN 402
             E H          +N    + + D  I V  +              ++T   H G V 
Sbjct: 213 VLEGHEELV-RCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVF 271

Query: 403 CVKWDPTGSLLASCSDDVTAKIWN 426
            +++D     + S S D T  IW+
Sbjct: 272 RLQFD--EFQIVSSSHDDTILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.4 bits (147), Expect = 6e-11
 Identities = 33/207 (15%), Positives = 72/207 (34%), Gaps = 37/207 (17%)

Query: 389 RPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRW 448
           + I   +     V C+++D     + S   D T KIW+    +    L  H+  +  +++
Sbjct: 6   QRIHCRSETSKGVYCLQYD--DQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY 63

Query: 449 SPTGSGTNNPNQQLILASASF-----------------------------DSTVKLWDVE 479
                 T + +  + +   +                              D ++ +WD+ 
Sbjct: 64  DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMA 123

Query: 480 LGKLL---YSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIF 536
               +     L GHR  V  + F       ASG  D+++ +W+    + V+T  G+    
Sbjct: 124 SPTDITLRRVLVGHRAAVNVVDFDDKYIVSASG--DRTIKVWNTSTCEFVRTLNGHKRGI 181

Query: 537 EVCWNKEGDKIAACFANHTVCVLDFRM 563
             C       + +  +++T+ + D   
Sbjct: 182 A-CLQYRDRLVVSGSSDNTIRLWDIEC 207

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 93.0 bits (229), Expect = 2e-21
 Identities = 53/309 (17%), Positives = 91/309 (29%), Gaps = 28/309 (9%)

Query: 218 VCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDV 277
                 +PAG  +   +G S      +   T               +     +++     
Sbjct: 20  AVVLGNTPAGDKIQYCNGTSV-YTVPVGSLT-------------DTEIYTEHSHQ----T 61

Query: 278 TTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSK---HKGPIFSLKWNKKGDYLLTGS 334
           T    +  G   A+G   G  RIW T        +      GP+  + W+ +   +    
Sbjct: 62  TVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVG 121

Query: 335 CDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPI--- 391
             +         +                      S                   P    
Sbjct: 122 EGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKF 181

Query: 392 -KTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSP 450
             TF  H   V+ V+++P GSL AS   D T  ++N         + E            
Sbjct: 182 KSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTK-TGVFEDDSLKNVAHSGS 240

Query: 451 TGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGH-REPVYSLAFSPTGEYLASG 509
               T +P+    +ASAS D T+K+W+V   K+  ++    R     L    T + L S 
Sbjct: 241 VFGLTWSPDGTK-IASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSI 299

Query: 510 SLDKSMHIW 518
           S +  ++  
Sbjct: 300 SANGFINFV 308

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 79.9 bits (195), Expect = 4e-17
 Identities = 45/276 (16%), Positives = 71/276 (25%), Gaps = 13/276 (4%)

Query: 205 NSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLK 264
            +D  I   H+ +      SP+G   ASG      RIW     T          +     
Sbjct: 48  LTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSG---P 104

Query: 265 HVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWN 324
                 + +SK +  +    E          G +    T           K        +
Sbjct: 105 VKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIIS 164

Query: 325 KKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCK 384
              D  +               E  K        P   +             + +     
Sbjct: 165 GSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKT 224

Query: 385 IGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSK-EI 443
                       H G V  + W P G+ +AS S D T KIWN+   K    +   ++ E 
Sbjct: 225 GVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIED 284

Query: 444 YTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVE 479
             +    T            L S S +  +   + E
Sbjct: 285 QQLGIIWTKQA---------LVSISANGFINFVNPE 311

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 51.8 bits (122), Expect = 7e-08
 Identities = 19/168 (11%), Positives = 41/168 (24%), Gaps = 12/168 (7%)

Query: 398 QGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNN 457
           +G    +   P G  +  C+   +     +          EHS +    + SP+G     
Sbjct: 17  RGTAVVLGNTPAGDKIQYCNGT-SVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGY---- 71

Query: 458 PNQQLILASASFDSTVKLWDVELGKLLYSLN--GHREPVYSLAFSPTGEYLASGSLDKSM 515
                  AS      V++WD      +          PV  +++    + +A+    +  
Sbjct: 72  -----YCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRER 126

Query: 516 HIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLDFRM 563
                            G    +              + +        
Sbjct: 127 FGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIF 174

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 92.3 bits (227), Expect = 2e-21
 Identities = 39/315 (12%), Positives = 94/315 (29%), Gaps = 38/315 (12%)

Query: 208 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVK 267
           +  + GH   + A   +P    L SGS D     W+ +                      
Sbjct: 6   LKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMH------------------- 42

Query: 268 GRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKG 327
               + S  + +LD +                   T      T  +          N  G
Sbjct: 43  ---QDHSNLIVSLDNSKAQEYS-------SISWDDTLKVNGITKHEFGSQPKVASANNDG 92

Query: 328 DYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGE 387
              +    D   ++    T +  +    +S  +     +N V+      + +        
Sbjct: 93  FTAVLT-NDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDL 151

Query: 388 NRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIR 447
                     + + + +   P+ + +A+        +++++  +                
Sbjct: 152 EVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAI 211

Query: 448 WSPTGSGTNN--PNQQLILASASFDSTVKLWDVE-LGKLLYSLNGHREPVYSLAFSPTGE 504
                    N    ++ ++A+ S D+ + ++ V+   K++ +LN H++ V +L +     
Sbjct: 212 SWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS- 270

Query: 505 YLASGSLDKSMHIWS 519
            L S   D  +  W+
Sbjct: 271 TLVSSGADACIKRWN 285

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 67.7 bits (163), Expect = 5e-13
 Identities = 44/291 (15%), Positives = 86/291 (29%), Gaps = 22/291 (7%)

Query: 274 SKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTG 333
           +K +T L  N     L +GSYDG+   W            H   I SL  +K  +Y    
Sbjct: 13  NKGITALTVNP----LISGSYDGRIMEW----SSSSMHQDHSNLIVSLDNSKAQEY---- 60

Query: 334 SCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKT 393
                + +    T +     +   G    V   NN  F    T++   +        I  
Sbjct: 61  -----SSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIK 115

Query: 394 FAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGS 453
                   + V        +     +          +           +   I  SP+ +
Sbjct: 116 SVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSET 175

Query: 454 GTNNPNQQLILASASFDST--VKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSL 511
                +    +      S              + +++       +       + +A+GSL
Sbjct: 176 YIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSL 235

Query: 512 DKSMHIWSLKE-GKIVKTYTG-NGGIFEVCWNKEGDKIAACFANHTVCVLD 560
           D ++ I+S+K   KI+K       G+  + W      + +  A+  +   +
Sbjct: 236 DTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGADACIKRWN 285

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 56.5 bits (134), Expect = 2e-09
 Identities = 15/67 (22%), Positives = 26/67 (38%), Gaps = 9/67 (13%)

Query: 386 GENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYT 445
           G +  +KT +GH   +  +  +P    L S S D     W+          ++HS  I +
Sbjct: 1   GHDEVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSS-----MHQDHSNLIVS 51

Query: 446 IRWSPTG 452
           +  S   
Sbjct: 52  LDNSKAQ 58

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 55.0 bits (130), Expect = 8e-09
 Identities = 17/90 (18%), Positives = 27/90 (30%), Gaps = 18/90 (20%)

Query: 429 QDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLN 488
            D+ +  +  H+K I  +  +P             L S S+D  +  W            
Sbjct: 2   HDEVLKTISGHNKGITALTVNP-------------LISGSYDGRIMEWSSSSM-----HQ 43

Query: 489 GHREPVYSLAFSPTGEYLASGSLDKSMHIW 518
            H   + SL  S   EY +    D      
Sbjct: 44  DHSNLIVSLDNSKAQEYSSISWDDTLKVNG 73

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.4 bits (113), Expect = 9e-07
 Identities = 14/83 (16%), Positives = 32/83 (38%), Gaps = 8/83 (9%)

Query: 481 GKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCW 540
            ++L +++GH + + +L  +P    L SGS D  +  WS        +      I  +  
Sbjct: 3   DEVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMHQDHS----NLIVSLDN 54

Query: 541 NKEGDKIAACFANHTVCVLDFRM 563
           +K  +  +  + +        + 
Sbjct: 55  SKAQEYSSISWDDTLKVNGITKH 77

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.1 bits (107), Expect = 5e-06
 Identities = 10/45 (22%), Positives = 16/45 (35%), Gaps = 1/45 (2%)

Query: 200 SFEIPNSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTI 244
           S + P   +  L  H   V    W    + L S   D+  + W +
Sbjct: 243 SVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGADACIKRWNV 286

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.8 bits (101), Expect = 3e-05
 Identities = 15/94 (15%), Positives = 32/94 (34%), Gaps = 1/94 (1%)

Query: 293 SYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKT-EEWKQ 351
           S + +   W+        +S       + +   + D + TGS D    ++ VK   +  +
Sbjct: 193 SREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIK 252

Query: 352 QFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKI 385
               H     ++ W    +  +S  D  I    +
Sbjct: 253 ALNAHKDGVNNLLWETPSTLVSSGADACIKRWNV 286

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 89.0 bits (219), Expect = 7e-20
 Identities = 34/333 (10%), Positives = 84/333 (25%), Gaps = 38/333 (11%)

Query: 209 TILEGHTSEVCACAWSPAGS-LLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVK 267
           + +            +P         +         +    +   A              
Sbjct: 33  SCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLS----------- 81

Query: 268 GRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTL-----SKHKGPIFSLK 322
               E  + + +   + +G  +       Q                      +       
Sbjct: 82  SVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTF 141

Query: 323 WNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYV 382
              +  YL+  + D +  V          + +  +G         N +    S  +++Y 
Sbjct: 142 PMPRQVYLMRAADDGSLYVAG----PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYF 197

Query: 383 CKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDK-YVHDLREHSK 441
                 R   +           ++       A+          ++K  K +  +  + ++
Sbjct: 198 WPHQSPRHEFSMLYT-----IARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTE 252

Query: 442 EIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSP 501
             +T   SP                   +  +  +D++  KL+ + N      Y +AF  
Sbjct: 253 LYFTGLRSPKDP---------NQIYGVLN-RLAKYDLKQRKLIKAAN-LDHTYYCVAFDK 301

Query: 502 TGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGG 534
            G+ L  G     + +++    + VK     GG
Sbjct: 302 KGDKLYLGGTFNDLAVFNPDTLEKVKNIKLPGG 334

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 62.4 bits (150), Expect = 4e-11
 Identities = 29/284 (10%), Positives = 63/284 (22%), Gaps = 41/284 (14%)

Query: 316 GPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGP---TLDVDWRNNVSFA 372
           GP          +Y++  +      V DV ++   +           T  +   N  ++ 
Sbjct: 1   GPALK----AGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYV 56

Query: 373 TSSTDNMIYVCKIGENRPIK------TFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWN 426
            ++    IY   +   +                 +      P G  + +  +       +
Sbjct: 57  LNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDH 116

Query: 427 MKQDKYVHDLREHS--KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLL 484
                   ++   +   E   +R  P              +       +   DV+ GK  
Sbjct: 117 YVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYT 176

Query: 485 YSLNGHREP-------------------------VYSLAFSPTGEYLASGSLDKSMHIWS 519
            +L                                    F    +  A+  L        
Sbjct: 177 VALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVD 236

Query: 520 LKEGKIVKTYTGNGGIFEVCWNKEG-DKIAACFANHTVCVLDFR 562
           LK GK       +         +   D        + +   D +
Sbjct: 237 LKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLK 280

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 50.5 bits (119), Expect = 3e-07
 Identities = 7/70 (10%), Positives = 18/70 (25%), Gaps = 3/70 (4%)

Query: 497 LAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYT--GNGGIFEVCWNKEGDKI-AACFAN 553
            A     EY+   +   ++H+  +    + K+       G        +           
Sbjct: 2   PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHY 61

Query: 554 HTVCVLDFRM 563
             +  +D   
Sbjct: 62  GDIYGIDLDT 71

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 47.8 bits (112), Expect = 2e-06
 Identities = 17/147 (11%), Positives = 36/147 (24%), Gaps = 17/147 (11%)

Query: 214 HTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEK 273
            +       +       A+           +  G                K       + 
Sbjct: 207 FSMLYTIARFKDDKQDPATADLLYGYLSVDLKTG----------------KTHTQEFADL 250

Query: 274 SKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTG 333
           ++   T   + +      G  +  A+       L           + + ++KKGD L  G
Sbjct: 251 TELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAA-NLDHTYYCVAFDKKGDKLYLG 309

Query: 334 SCDKTAIVWDVKTEEWKQQFEFHSGPT 360
                  V++  T E  +  +   G  
Sbjct: 310 GTFNDLAVFNPDTLEKVKNIKLPGGDM 336

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 86.4 bits (212), Expect = 6e-19
 Identities = 36/353 (10%), Positives = 86/353 (24%), Gaps = 50/353 (14%)

Query: 218 VCACAWSPAGSLL-----ASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNE 272
               A +P    +     A  +  +   +     G   G    G L   V+         
Sbjct: 4   RILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLPNPVV--------- 54

Query: 273 KSKDVTTLDW-NGEGTLLATGSYDGQARIWST-NGDLKCTLSKHKGPIFSLKWNKKG--- 327
            + D + +   +   + +A G       ++          +     P F +         
Sbjct: 55  -ADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSL 113

Query: 328 ------DYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIY 381
                       S      V D++ + +K+  +        +      +F     D  + 
Sbjct: 114 TPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCY--HIFPTAPDTFFMHCRDGSLA 171

Query: 382 VCKIGENRPIK------TFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDK---- 431
               G     +           +  +N   +      L   +        ++        
Sbjct: 172 KVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFL 231

Query: 432 --------YVHDLREHSKEIYTIRWSPTGSGTNNPNQQ-LILASASFDSTVKLWDVELGK 482
                                 + +            Q       +    V + D + G+
Sbjct: 232 PAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGE 291

Query: 483 LLYSLNGHREPVYSLAFSPTGEYL--ASGSLDKSMHIWSLKEGKIVKTYTGNG 533
            L         + S+  S   + L  A  + DK+++I   + G+ +++    G
Sbjct: 292 RLAKFEMGH-EIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLG 343

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 74.4 bits (181), Expect = 5e-15
 Identities = 35/321 (10%), Positives = 73/321 (22%), Gaps = 57/321 (17%)

Query: 222 AWSPAGSLLA----------SGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTN 271
             +  GS +A           G       ++                    ++       
Sbjct: 53  VVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTA----------DIELPDAPRF 102

Query: 272 EKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLL 331
                        +G  L    +     +   + + K        P     +    D   
Sbjct: 103 LVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFF 162

Query: 332 TGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSF-------ATSSTDNMIYV-- 382
               D +       TE   +          D    N+ ++          +    I+   
Sbjct: 163 MHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQID 222

Query: 383 CKIGENRPIKTFAGHQGEVNCVKWDP--------------------TGSLLASCSDDVTA 422
              G+ + +              W P                            +     
Sbjct: 223 LSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFV 282

Query: 423 KIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK 482
            + + K  + +    E   EI +I  S          + L+ A ++ D T+ + D E G+
Sbjct: 283 VVLDAKTGERLAKF-EMGHEIDSINVSQDE-------KPLLYALSTGDKTLYIHDAESGE 334

Query: 483 LLYSLNGHREPVYSLAFSPTG 503
            L S+N        +  +  G
Sbjct: 335 ELRSVNQLGHGPQVITTADMG 355

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 46.3 bits (108), Expect = 6e-06
 Identities = 11/97 (11%), Positives = 28/97 (28%), Gaps = 13/97 (13%)

Query: 465 ASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLA----------SGSLDKS 514
           A  +  +   + D E G+++  ++G   P  +   +  G ++A           G     
Sbjct: 22  AHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDY 79

Query: 515 MHIWSLKEGKIVKT-YTGNGGIFEVCWNKEGDKIAAC 550
           + ++              +   F V        +   
Sbjct: 80  VEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPD 116

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 84.9 bits (208), Expect = 1e-18
 Identities = 27/326 (8%), Positives = 74/326 (22%), Gaps = 34/326 (10%)

Query: 211 LEGHTSEVCACAWSPAGS-LLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGR 269
           +            +P G    A+ +   +     +  G + G          V       
Sbjct: 29  IADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAA 88

Query: 270 TNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDY 329
            +   K +   +      L        +  ++      +    +    I  L W + G  
Sbjct: 89  LSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSK 148

Query: 330 LLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENR 389
           L     D    V D +     +     S         + ++       +           
Sbjct: 149 LYGLGRDL--HVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESS----------- 195

Query: 390 PIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVH-DLREHSKEIYTIRW 448
                                      +        +++  +    ++R      ++   
Sbjct: 196 -------GVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAV 248

Query: 449 SPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLAS 508
           +P  +            +    + ++ +D+E    +  +       YS+  S  G  +  
Sbjct: 249 NPAKT-----------RAFGAYNVLESFDLEKNASIKRVP-LPHSYYSVNVSTDGSTVWL 296

Query: 509 GSLDKSMHIWSLKEGKIVKTYTGNGG 534
           G     +  +  +  +        G 
Sbjct: 297 GGALGDLAAYDAETLEKKGQVDLPGN 322

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 76.8 bits (187), Expect = 7e-16
 Identities = 27/307 (8%), Positives = 72/307 (23%), Gaps = 36/307 (11%)

Query: 288 LLATGSYDGQARIW--STNGDLK-CTLSKHKGPIFSLKWNKKGDYLL-TGSCDKTAIVWD 343
            +   +   +  +         K  T++              G     T +  ++ +  D
Sbjct: 3   YILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKID 62

Query: 344 VKTEEWKQQFEFHSGPT-----------------LDVDWRNNVSFATSSTDNMIYVCKIG 386
           + T E   + +  +                       +    +                 
Sbjct: 63  LVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDA 122

Query: 387 ENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIY-- 444
           E    +       ++  + W   GS L     D+               ++    E Y  
Sbjct: 123 ETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQ 182

Query: 445 --TIRWSPTGSGTNN--------PNQQLILASASFDSTVKLWDVELGKLLY-SLNGHREP 493
              +        +                    ++ + +   D+E G++    +      
Sbjct: 183 PDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVF 242

Query: 494 VYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFAN 553
            +S A +P             +  + L++   +K        + V  + +G  +    A 
Sbjct: 243 YFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGAL 300

Query: 554 HTVCVLD 560
             +   D
Sbjct: 301 GDLAAYD 307

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 50.2 bits (118), Expect = 3e-07
 Identities = 25/267 (9%), Positives = 59/267 (22%), Gaps = 32/267 (11%)

Query: 328 DYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGP----TLDVDWRNNVSFATSSTDNMIYVC 383
           DY+L  +     +V D +     +               V     +++AT +    +   
Sbjct: 2   DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKI 61

Query: 384 KIGENRPIKTFAGHQGE-----VNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLRE 438
            +     +        E     +      P G  LA     V  ++ + +       L +
Sbjct: 62  DLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYD 121

Query: 439 -----------------------HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKL 475
                                     ++Y +                     S+++    
Sbjct: 122 AETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYA 181

Query: 476 WDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGI 535
               L       +               +     +    +    L+ G++         +
Sbjct: 182 QPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDV 241

Query: 536 FEVCWNKEGDKIAACFANHTVCVLDFR 562
           F         K  A  A + +   D  
Sbjct: 242 FYFSTAVNPAKTRAFGAYNVLESFDLE 268

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 43.6 bits (101), Expect = 3e-05
 Identities = 12/153 (7%), Positives = 28/153 (18%), Gaps = 1/153 (0%)

Query: 213 GHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNE 272
              ++    A           +         I                L    +  R   
Sbjct: 178 ETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVR 237

Query: 273 KSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLT 332
                                       +    +            +S+  +  G  +  
Sbjct: 238 IMDVFYF-STAVNPAKTRAFGAYNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWL 296

Query: 333 GSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDW 365
           G        +D +T E K Q +     ++ +  
Sbjct: 297 GGALGDLAAYDAETLEKKGQVDLPGNASMSLAS 329

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 76.9 bits (188), Expect = 9e-16
 Identities = 20/327 (6%), Positives = 60/327 (18%), Gaps = 65/327 (19%)

Query: 222 AWSPAG----------SLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTN 271
               +G          +  A G       ++              P+  + L      + 
Sbjct: 71  VAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFL--------PIADIELPDAPRFSV 122

Query: 272 EKSKDVTTLDWNGEGTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYL 330
                +     +    LL        A   S                             
Sbjct: 123 GPRVHIIGNCASSA-CLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAA---ATH 178

Query: 331 LTGSCDKTAIVWDVKTEEWK------QQFEFHSGPTLDVDW-RNNVSFATSSTDNMIYVC 383
             GSC  +    D+            Q     +  +         +     ++  +    
Sbjct: 179 YLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDI 238

Query: 384 KIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEI 443
                       G++       +   G  + +   +    +    +              
Sbjct: 239 PAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSC--------- 289

Query: 444 YTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTG 503
                                   +           +G+    +  +     ++  +  G
Sbjct: 290 -----------------------LAAAENTSSVTASVGQTSGPI-SNGHDSDAIIAAQDG 325

Query: 504 EYL--ASGSLDKSMHIWSLKEGKIVKT 528
                A+ +  + + I+     +   +
Sbjct: 326 ASDNYANSAGTEVLDIYDAASDQDQSS 352

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 65.3 bits (157), Expect = 3e-12
 Identities = 26/277 (9%), Positives = 63/277 (22%), Gaps = 41/277 (14%)

Query: 291 TGSYDGQARIWST-NGDLKCTLSKHKGPIFSLKWNKKGDYLL-TGSCDKTAIVWDVKTEE 348
             S      +    +  +  T+     P      +  G  +    +      + D  T  
Sbjct: 7   ANSESDNISVIDVTSNKVTATIPVGSNP-MGAVISPDGTKVYVANAHSNDVSIIDTATNN 65

Query: 349 WKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDP 408
                   S P       +      ++  +         +  +            +   P
Sbjct: 66  VIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSP 125

Query: 409 TGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSP------------------ 450
            G  L   ++            K V +     +    I  +P                  
Sbjct: 126 DGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVI 185

Query: 451 ------------------TGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHRE 492
                               +      +  +     + +TV + D    K+   +    +
Sbjct: 186 DTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPD 245

Query: 493 PVYSLAFSPTGEYL-ASGSLDKSMHIWSLKEGKIVKT 528
           P   +A +P G+ +  + S   ++ +       I  T
Sbjct: 246 P-AGIAVTPDGKKVYVALSFCNTVSVIDTATNTITAT 281

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 52.2 bits (123), Expect = 7e-08
 Identities = 35/282 (12%), Positives = 81/282 (28%), Gaps = 29/282 (10%)

Query: 216 SEVCACAWSPAGS-LLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKS 274
           S       SP G+ +  + +  +   I   A                    +       S
Sbjct: 32  SNPMGAVISPDGTKVYVANAHSNDVSIIDTATN----------------NVIATVPAGSS 75

Query: 275 KDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGS 334
                +  +G+   +   +    + I +T+  +  T+   K P+            +T +
Sbjct: 76  PQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNN 135

Query: 335 CDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTF 394
            DKT  V +  T+           P       +      ++ D+M           +   
Sbjct: 136 GDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDT 195

Query: 395 AGHQGEVNCVKWDPTGSLLA---SCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPT 451
              +   + +  +P G+            T  + +   +K    +     +   I  +P 
Sbjct: 196 VKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP-DPAGIAVTPD 254

Query: 452 GSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREP 493
           G        + +  + SF +TV + D     +  ++   + P
Sbjct: 255 G--------KKVYVALSFCNTVSVIDTATNTITATMAVGKNP 288

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 51.8 bits (122), Expect = 8e-08
 Identities = 12/99 (12%), Positives = 30/99 (30%), Gaps = 2/99 (2%)

Query: 466 SASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYL-ASGSLDKSMHIWSLKEGK 524
           + S    + + DV   K+  ++     P      SP G  +  + +    + I       
Sbjct: 7   ANSESDNISVIDVTSNKVTATIPVGSNP-MGAVISPDGTKVYVANAHSNDVSIIDTATNN 65

Query: 525 IVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLDFRM 563
           ++ T         V  + +G ++       +   +    
Sbjct: 66  VIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTT 104

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 58.3 bits (140), Expect = 1e-09
 Identities = 37/282 (13%), Positives = 81/282 (28%), Gaps = 18/282 (6%)

Query: 272 EKSKDVTTLDWNGEGTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYL 330
           E        DW+ E     T    GQ  +   +  ++K  L          + +  G YL
Sbjct: 18  EDRPTQQMNDWDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAV-HISRLSASGRYL 76

Query: 331 LTGSCDKTAIVWDVKTEEWKQQFE-------FHSGPTLDVDWRNNVSFATSSTDNMIYVC 383
                D    + D+  +E     E            +    W +  + A +       + 
Sbjct: 77  FVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIM 136

Query: 384 KIGENRPIKTFAGHQGEVNCVKWDPTGSLLA-SCSDDVTAKIWNMKQDKYVHDLREHSKE 442
                 P K  +      +  ++ P   + A   S      I N+K+   +  +      
Sbjct: 137 DGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLN 196

Query: 443 IYTIRWSPTGS----GTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLA 498
                          G  + + +  + +A+  + + + D + GKL+ ++           
Sbjct: 197 NLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLV-AIEDTGGQTPHPG 255

Query: 499 FSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCW 540
                 +   G +  + H+    +  +    T   G  +  W
Sbjct: 256 RGANFVHPTFGPVWATSHMG---DDSVALIGTDPEGHPDNAW 294

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 54.0 bits (129), Expect = 2e-08
 Identities = 17/121 (14%), Positives = 35/121 (28%), Gaps = 8/121 (6%)

Query: 450 PTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASG 509
           PT    +   + L   +      + L D    ++   L+      +    S +G YL   
Sbjct: 21  PTQQMNDWDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAV-HISRLSASGRYLFVI 79

Query: 510 SLDKSMHIWSLKEGK--IVKTYTGNGGIFEVCWNKEGDK-----IAACFANHTVCVLDFR 562
             D  +++  L   +   V           +  +K         IA  +      ++D  
Sbjct: 80  GRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGE 139

Query: 563 M 563
            
Sbjct: 140 T 140

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 56.1 bits (134), Expect = 5e-09
 Identities = 16/121 (13%), Positives = 32/121 (26%), Gaps = 8/121 (6%)

Query: 450 PTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASG 509
           P     +     L   +      + L D +  K++  ++      +    S +G YL   
Sbjct: 21  PKKQLNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAV-HISRMSASGRYLLVI 79

Query: 510 SLDKSMHIWSLKEGKIVKTYT------GNGGIFEVCWNKEGDK-IAACFANHTVCVLDFR 562
             D  + +  L   +  K                     E    IA  +      ++D  
Sbjct: 80  GRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGE 139

Query: 563 M 563
            
Sbjct: 140 T 140

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 53.8 bits (128), Expect = 3e-08
 Identities = 36/279 (12%), Positives = 73/279 (26%), Gaps = 27/279 (9%)

Query: 279 TLDWNGEGTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDK 337
             D +       T    GQ  +   +   +   +          + +  G YLL    D 
Sbjct: 25  LNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAV-HISRMSASGRYLLVIGRDA 83

Query: 338 TAIVWDVKTEEWKQQFEFHSGP-------TLDVDWRNNVSFATSSTDNMIYVCKIGENRP 390
              + D+  +E  +  E   G        +    + +  + A +       +       P
Sbjct: 84  RIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEP 143

Query: 391 IKTFAGHQGEVNCVKWDPTGSL-LASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWS 449
            +  +     V+   + P   +     S +    I N+K+   V  +     +  T+   
Sbjct: 144 KQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSI 203

Query: 450 PTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASG 509
                         LA   +DS+ + +               +     A    G+    G
Sbjct: 204 GAAPF---------LADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPG 254

Query: 510 SLDKSMH--------IWSLKEGKIVKTYTGNGGIFEVCW 540
                +H           L +G I    T      +  W
Sbjct: 255 RGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAW 293

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 53.4 bits (127), Expect = 4e-08
 Identities = 45/390 (11%), Positives = 95/390 (24%), Gaps = 72/390 (18%)

Query: 208 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQ----NGPLNVLV- 262
           V +++     V     S +G  L     D+   +  +        A+        +V   
Sbjct: 55  VKVIDTG-YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESS 113

Query: 263 --------------------------LKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDG 296
                                         K   + +   V T  ++ E  + A  +   
Sbjct: 114 KFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHE 173

Query: 297 QARIWSTNGDLKCTLSKHKGPIFSLKWNK--KGDYLLTGSCDKTAIVWDVKTEEWKQQFE 354
                    +    L  +   I +L         +L  G  D +   +        +   
Sbjct: 174 HPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAV 233

Query: 355 FHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLA 414
                      ++    A                R         G V        GS+  
Sbjct: 234 ID--------SKDRRLSALVDVGKT-----PHPGRGANFVHPKYGPVWSTSHLGDGSISL 280

Query: 415 SCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVK 474
             +D      +  K+   V +L+        I+  P    ++          A    +V 
Sbjct: 281 IGTDPKNHPQYAWKK---VAELQGQGGGSLFIKTHP--KSSHLYVDTTFNPDARISQSVA 335

Query: 475 LWDVELGKLLYSLNGHREP---------VYSLAFSPTGEYL-----ASGSLDKSMHIWSL 520
           ++D++     Y +    E          V    ++  G+ +        +   ++ +   
Sbjct: 336 VFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDD 395

Query: 521 KEGKIVKTYTGNG-----GIFEVCWNKEGD 545
           K  K+             G F V +N + D
Sbjct: 396 KTLKLKAVVKDPRLITPTGKFNV-YNTQHD 424

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 47.5 bits (111), Expect = 2e-06
 Identities = 34/341 (9%), Positives = 88/341 (25%), Gaps = 40/341 (11%)

Query: 224 SPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWN 283
           S   ++  +        +W +           G L +        +  +    V  +  +
Sbjct: 1   SLKQTVYIASPESQQIHVWNLN--------HEGALTLT-------QVVDVPGQVQPMVVS 45

Query: 284 GEG-TLLATGSYDGQARIWSTNGD----LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDK- 337
            +   L      + +   +    D         S   G +  +  + +G ++  GS +  
Sbjct: 46  PDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAG 105

Query: 338 --TAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFA 395
             +    +                    +   +             +C    +      A
Sbjct: 106 NVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVA 165

Query: 396 GHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLRE----HSKEIYTIRWSPT 451
               EV  V+      ++   ++     +  +     V +L++                 
Sbjct: 166 QDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPEN 225

Query: 452 GSGTNNPNQQLI-------LASASFDSTVKLWDVELGKLLYSLNGHREP---VYSLAFSP 501
            S T       I        A     S + ++ V     + S  G +             
Sbjct: 226 FSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDH 285

Query: 502 TGEYL-ASGSLDKSMHIWSL--KEGKIVKTYTGNGGIFEVC 539
           +G+YL A+G     + ++ +  ++G + +      G   + 
Sbjct: 286 SGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAVGQGPMW 326

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 470

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 41.6 bits (96), Expect = 2e-04
 Identities = 31/276 (11%), Positives = 64/276 (23%), Gaps = 22/276 (7%)

Query: 271 NEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTL----SKHKGPIFSLKWNKK 326
           + +   +    ++ E             +  + N  +K  +    S       +      
Sbjct: 192 DTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITA 251

Query: 327 GDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIG 386
              +L G      + W  +     Q        ++      +    +S   N +   +  
Sbjct: 252 PASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYD---ESSGRWNCLVARQHI 308

Query: 387 ENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTI 446
           E          +        D         +++    I   + DK               
Sbjct: 309 EMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFITKGTWEVIG 368

Query: 447 RWSP-------TGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAF 499
             +          +          L         K+       L   LN  R   YS++F
Sbjct: 369 IEALTSDYLYYISNEYKGMPGGRNLYKIQLSDYTKVTC-----LSCELNPERCQYYSVSF 423

Query: 500 SPTGEYLA---SGSLDKSMHIWSLKEGKIVKTYTGN 532
           S   +Y     SG       + S    K ++    N
Sbjct: 424 SKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRVLEDN 459

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 269

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 41.0 bits (94), Expect = 2e-04
 Identities = 22/261 (8%), Positives = 65/261 (24%), Gaps = 18/261 (6%)

Query: 291 TGSYDGQARIWSTNGDLK--CTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEE 348
           T        +  ++ D      + +   P+ S  W+  G  L   +       ++     
Sbjct: 12  TNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVT-------FESGRSA 64

Query: 349 WKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDP 408
              Q   +        +  +      S D       + +   +  +          +   
Sbjct: 65  LVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTD 124

Query: 409 TGSLLA------SCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQL 462
             S            +         +   Y  ++   + +  T   S       + + + 
Sbjct: 125 GRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKF 184

Query: 463 ILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLD---KSMHIWS 519
           ++  +S      +   +L      +        + + +P G  +   S       +++ S
Sbjct: 185 MVMVSSNGGQQHIAKQDLATGGVQVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVS 244

Query: 520 LKEGKIVKTYTGNGGIFEVCW 540
                  +    +G +    W
Sbjct: 245 TDGRFKARLPATDGQVKFPAW 265

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} Length = 441

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

 Score = 41.4 bits (97), Expect = 2e-04
 Identities = 48/342 (14%), Positives = 85/342 (24%), Gaps = 68/342 (19%)

Query: 228 SLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGR----TNEKSKDVTTLDWN 283
           S    G  + +  I        NG     P   +      G+     ++ +  V  +   
Sbjct: 44  SATGWGITNESKEILGGDQQYLNGDCH-HPHISMTDGRYDGKYLFINDKANTRVARIR-- 100

Query: 284 GEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWD 343
                L     D    I +        L K           K   Y+   +        D
Sbjct: 101 -----LDIMKTDKITHIPNVQAIHGLRLQK---------VPKTN-YVFCNAEFVIPQPND 145

Query: 344 VKTEEWKQQFEFHS---GPTLDVDWRNNVS---------------FATSSTDNMIYVCKI 385
                    +   +     T+DV W+  V                 +T            
Sbjct: 146 GTDFSLDNSYTMFTAIDAETMDVAWQVIVDGNLDNTDADYTGKYATSTCYNSERAVD-LA 204

Query: 386 GENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYT 445
           G  R  + +               G+        V            V D R  S+    
Sbjct: 205 GTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVP-----------VVDGRGESEFTRY 253

Query: 446 IR--WSPTGSGTNNPNQQLILASASFDSTVKLWDVEL------GKLLYSLNGHREP---- 493
           I    +P G  T+ P+ +  +A+     TV +  ++        K+        EP    
Sbjct: 254 IPVPKNPHGLNTS-PDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGL 312

Query: 494 -VYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGG 534
                 F   G    +  +D  +  W++     +K Y G+  
Sbjct: 313 GPLHTTFDGRGNAYTTLFIDSQVCKWNI--ADAIKHYNGDRV 352

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} Length = 441

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

 Score = 40.7 bits (95), Expect = 4e-04
 Identities = 30/252 (11%), Positives = 64/252 (25%), Gaps = 56/252 (22%)

Query: 275 KDVTTLDWNGEGTLLATGSYDGQ--ARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLT 332
            ++   D +  G    +  Y+ +    +  T  + +  +             K G++   
Sbjct: 176 GNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERI-AAAVKAGNFKTI 234

Query: 333 GSCDKTAIVWDVKTEEWKQQFEFHSGP-TLDVDWRNNVSFATSSTDNMIYVCKIGENRPI 391
           G   K  +V      E+ +       P  L+         A       + V  I  ++  
Sbjct: 235 GD-SKVPVVDGRGESEFTRYIPVPKNPHGLNTSPDGKYFIANGKLSPTVSVIAI--DKLD 291

Query: 392 KTFAGHQGEVNCVK-------------WDPTGSLLASCSDDVTAKIWNMKQDKYVHDLRE 438
             F       + +              +D  G+   +   D     WN+           
Sbjct: 292 DLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNI----------A 341

Query: 439 HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLA 498
            + + Y                         +   +  DV+     Y   GH     + +
Sbjct: 342 DAIKHY--------------------NGDRVNYIRQKLDVQ-----YQP-GHNHASLTES 375

Query: 499 FSPTGEYLASGS 510
               G++L   S
Sbjct: 376 RDADGKWLVVLS 387

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	563
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	100.0
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.98
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.97
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.97
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.97
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.96
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.95
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.94
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.92
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.92
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.92
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.91
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.9
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.88
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.88
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.88
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.85
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.84
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.83
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.8
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.8
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.79
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.74
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.72
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.65
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.57
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.45
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.42
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.32
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.32
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.19
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.12
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.11
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.08
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.0
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.0
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.99
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.97
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.96
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.94
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.91
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.86
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.77
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.69
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.61
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.46
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.43
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.38
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.14
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	97.73
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.61
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.6
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	97.49
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.46
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.37
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	97.2
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.15
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.06
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.0
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	96.94
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	96.91
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	96.72
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	96.57
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	96.37
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	96.29
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.12
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	96.06
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	95.94
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	95.34
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	95.02
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	95.0
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	94.77
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	93.88
d1uuja_	76	Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-te	92.84
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	92.05
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	92.01
d1jtdb_	273	beta-lactamase inhibitor protein-II, BLIP-II {Stre	90.67
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	90.07
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	89.57
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	86.57
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	81.82

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.3e-42  Score=339.72  Aligned_cols=288  Identities=18%  Similarity=0.359  Sum_probs=249.7

Q ss_pred             eEecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCE
Q 008496          209 TILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTL  288 (563)
Q Consensus       209 ~~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~  288 (563)
                      .++ +|...|++++|+|+|++||||+ ||.|+|||+..+....     ...  . .    ....+...|++++|+|+|++
T Consensus        46 ~~~-~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~-----~~~--~-~----~~~~h~~~I~~v~~s~dg~~  111 (337)
T d1gxra_          46 NTL-NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKS-----PVS--Q-L----DCLNRDNYIRSCKLLPDGCT  111 (337)
T ss_dssp             EEE-CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCS-----CSE--E-E----ECSCTTSBEEEEEECTTSSE
T ss_pred             EEC-CCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccc-----eeE--E-e----eecCCCCcEEEEEEcCCCCE
Confidence            344 7999999999999999999987 8999999997643211     111  0 0    11235678999999999999


Q ss_pred             EEEEeCCCeEEEEEcCC---ceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEec
Q 008496          289 LATGSYDGQARIWSTNG---DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDW  365 (563)
Q Consensus       289 l~sg~~dg~i~vw~~~~---~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~  365 (563)
                      |++|+.||.|++|+...   .....+..|...|..+.|+|++.++++++.|+.+++||+.+++..               
T Consensus       112 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~---------------  176 (337)
T d1gxra_         112 LIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLV---------------  176 (337)
T ss_dssp             EEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE---------------
T ss_pred             EEEeecccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc---------------
Confidence            99999999999999753   345677889999999999999999999999999999998876432               


Q ss_pred             CCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEE
Q 008496          366 RNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYT  445 (563)
Q Consensus       366 ~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~  445 (563)
                                                ....+|...|.+++|++++..+++|+.|+.+++||+++++.+..+ .|...|++
T Consensus       177 --------------------------~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~-~~~~~i~~  229 (337)
T d1gxra_         177 --------------------------RQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQH-DFTSQIFS  229 (337)
T ss_dssp             --------------------------EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE-ECSSCEEE
T ss_pred             --------------------------ccccccccccccccccccccccccccccccccccccccceeeccc-ccccceEE
Confidence                                      234567888999999999999999999999999999999887665 47889999


Q ss_pred             EEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCee
Q 008496          446 IRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKI  525 (563)
Q Consensus       446 ~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~  525 (563)
                      ++|+|++.         +|++|+.|+.|++||++.++.. ....|..+|++++|+|+|++|++|+.||.|++||+.+++.
T Consensus       230 l~~~~~~~---------~l~~~~~d~~i~i~d~~~~~~~-~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~  299 (337)
T d1gxra_         230 LGYCPTGE---------WLAVGMESSNVEVLHVNKPDKY-QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGAS  299 (337)
T ss_dssp             EEECTTSS---------EEEEEETTSCEEEEETTSSCEE-EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE
T ss_pred             EEEccccc---------ccceeccccccccccccccccc-cccccccccceEEECCCCCEEEEEeCCCeEEEEECCCCCE
Confidence            99999875         7899999999999999988765 5567999999999999999999999999999999999999


Q ss_pred             EEEEecCCCEEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496          526 VKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLDFR  562 (563)
Q Consensus       526 ~~~~~~~~~i~~l~w~~~g~~la~~~~~~~v~v~~~~  562 (563)
                      +..+.....|.+++|+|+|++||+|+.|++|.|||+-
T Consensus       300 ~~~~~~~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl~  336 (337)
T d1gxra_         300 IFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYEVI  336 (337)
T ss_dssp             EEEEECSSCEEEEEECTTSCEEEEEETTSCEEEEEEE
T ss_pred             EEEccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEEE
Confidence            9998888899999999999999999999999999973

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.6e-41  Score=328.97  Aligned_cols=295  Identities=29%  Similarity=0.499  Sum_probs=258.7

Q ss_pred             eeEecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCC
Q 008496          208 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT  287 (563)
Q Consensus       208 ~~~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~  287 (563)
                      ..+|+||++.|++++|+|++++||||+.||+|+|||+.++...             ..+    ..+...|++++|+|++.
T Consensus        10 ~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~-------------~~~----~~h~~~V~~~~~~~~~~   72 (317)
T d1vyhc1          10 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFE-------------RTL----KGHTDSVQDISFDHSGK   72 (317)
T ss_dssp             SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCC-------------EEE----CCCSSCEEEEEECTTSS
T ss_pred             cEEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEE-------------EEE----eCCCCcEEEEeeecccc
Confidence            3579999999999999999999999999999999999865431             111    23467899999999999


Q ss_pred             EEEEEeCCCeEEEEEcCC-ceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecC
Q 008496          288 LLATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR  366 (563)
Q Consensus       288 ~l~sg~~dg~i~vw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~  366 (563)
                      ++++++.++.+.+|+... .....+..|...+.++.|+|+++.+++++.|+.+++||++++...                
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~----------------  136 (317)
T d1vyhc1          73 LLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCV----------------  136 (317)
T ss_dssp             EEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEE----------------
T ss_pred             cccccccccccccccccccccccccccccccceeeeccCCCceEEeeccCcceeEeecccceee----------------
Confidence            999999999999999654 455667889999999999999999999999999999998876432                


Q ss_pred             CCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEEE
Q 008496          367 NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTI  446 (563)
Q Consensus       367 ~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~  446 (563)
                                               ..+.+|...+.+++|+|++++|++|+.|+.|++|+..+......+..|...+.++
T Consensus       137 -------------------------~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~  191 (317)
T d1vyhc1         137 -------------------------KTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECI  191 (317)
T ss_dssp             -------------------------EEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEE
T ss_pred             -------------------------eEEccCCCcceeeecccCCCEEEEEeCCCeEEEEeeccceeeEEEecCCCCceEE
Confidence                                     3345678889999999999999999999999999999999999999999999999


Q ss_pred             EEccCCCCCC-----------CCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcE
Q 008496          447 RWSPTGSGTN-----------NPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSM  515 (563)
Q Consensus       447 ~~~p~~~~~~-----------~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v  515 (563)
                      .|+|......           ......++++++.|+.|++||+.+++++.++.+|..+|.+++|+|++++|++|+.||.|
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i  271 (317)
T d1vyhc1         192 SWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTL  271 (317)
T ss_dssp             EECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEE
T ss_pred             EEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCCCCCEEEEEECCCCCEEEEEECCCeE
Confidence            9998753210           01122368899999999999999999999999999999999999999999999999999


Q ss_pred             EEEecCCCeeEEEEec-CCCEEEEEEcCCCCEEEEEECCCeEEEEE
Q 008496          516 HIWSLKEGKIVKTYTG-NGGIFEVCWNKEGDKIAACFANHTVCVLD  560 (563)
Q Consensus       516 ~iw~~~~~~~~~~~~~-~~~i~~l~w~~~g~~la~~~~~~~v~v~~  560 (563)
                      +|||+.+++++.++.+ .+.|++++|+|+|++||+|+.|++|.|||
T Consensus       272 ~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         272 RVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             EEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred             EEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence            9999999999999986 46799999999999999999999999996

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3e-40  Score=331.48  Aligned_cols=300  Identities=26%  Similarity=0.417  Sum_probs=239.6

Q ss_pred             cCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEe-eecccccCCCCeEEEEECCCCCEEE
Q 008496          212 EGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKH-VKGRTNEKSKDVTTLDWNGEGTLLA  290 (563)
Q Consensus       212 ~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~V~~l~~s~~g~~l~  290 (563)
                      .+|++.|+|++|||+|++||+|+ |++|+||++.++.................. .......+...|++++|+|+|++|+
T Consensus        59 ~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~  137 (388)
T d1erja_          59 LDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLA  137 (388)
T ss_dssp             EECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEE
T ss_pred             CCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcce
Confidence            36999999999999999999986 999999999876532211111000000000 0111223566799999999999999


Q ss_pred             EEeCCCeEEEEEcC-CceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecC-CC
Q 008496          291 TGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR-NN  368 (563)
Q Consensus       291 sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~  368 (563)
                      +|+.||.|++|+.. +.....+.+|..+|.++.|++++..+++++.++.+++||..+.........+...+....+. +.
T Consensus       138 s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (388)
T d1erja_         138 TGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDG  217 (388)
T ss_dssp             EEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTC
T ss_pred             ecccccccccccccccccccccccccccccccccccccccccccccceeeeeeeccccccccccccccccccccccCCCC
Confidence            99999999999976 45667788999999999999999999999999999999999887776665554444333333 45


Q ss_pred             ceEEEEeCCCeEEEEEcCCCcceeee-------cCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCce---------
Q 008496          369 VSFATSSTDNMIYVCKIGENRPIKTF-------AGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKY---------  432 (563)
Q Consensus       369 ~~~~~~~~d~~i~~~~~~~~~~~~~~-------~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~---------  432 (563)
                      ..+++++.|+.|++|+......+..+       .+|.+.|.+++|+|++++|++|+.|+.|++||+.+...         
T Consensus       218 ~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~  297 (388)
T d1erja_         218 KYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNS  297 (388)
T ss_dssp             CEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC--------------
T ss_pred             CeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccccccccccc
Confidence            67888999999999999887655443       47889999999999999999999999999999875432         


Q ss_pred             ---eeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEE------cCCC
Q 008496          433 ---VHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAF------SPTG  503 (563)
Q Consensus       433 ---~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~------spdg  503 (563)
                         ......|...|.+++|+|++.         +|++|+.||.|++||+++++++.++.+|..+|+++++      +|++
T Consensus       298 ~~~~~~~~~~~~~v~~~~~s~~~~---------~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~~~spd~  368 (388)
T d1erja_         298 GTCEVTYIGHKDFVLSVATTQNDE---------YILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEY  368 (388)
T ss_dssp             -CEEEEEECCSSCEEEEEECGGGC---------EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTC
T ss_pred             cceeeecccccceEEEEEECCCCC---------EEEEEeCCCEEEEEECCCCcEEEEEeCCCCCEEEEEEecCcccCCCC
Confidence               334456888999999999875         7999999999999999999999999999999999974      6799


Q ss_pred             CEEEEEeCCCcEEEEecC
Q 008496          504 EYLASGSLDKSMHIWSLK  521 (563)
Q Consensus       504 ~~lasgs~dg~v~iw~~~  521 (563)
                      .+|||||.||+|+||+++
T Consensus       369 ~~l~s~s~Dg~I~iW~~~  386 (388)
T d1erja_         369 NVFATGSGDCKARIWKYK  386 (388)
T ss_dssp             EEEEEEETTSEEEEEEEE
T ss_pred             CEEEEEeCCCEEEEEeee
Confidence            999999999999999985

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.9e-38  Score=311.22  Aligned_cols=286  Identities=24%  Similarity=0.419  Sum_probs=245.5

Q ss_pred             ceeEecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCC
Q 008496          207 DVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG  286 (563)
Q Consensus       207 ~~~~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g  286 (563)
                      ..++|+||++.|++++|+|++++||||+.||+|+|||+.++..             +..+    ..+...|++++|+|++
T Consensus        47 ~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~-------------~~~~----~~~~~~v~~v~~~~~~  109 (340)
T d1tbga_          47 TRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNK-------------VHAI----PLRSSWVMTCAYAPSG  109 (340)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEE-------------EEEE----ECSCSCEEEEEECTTS
T ss_pred             eeEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeeccccee-------------EEEE----ecccccEEeeEeeccc
Confidence            3468999999999999999999999999999999999876531             1111    2346789999999999


Q ss_pred             CEEEEEeCCCeEEEEEcCC-----ceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeE
Q 008496          287 TLLATGSYDGQARIWSTNG-----DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTL  361 (563)
Q Consensus       287 ~~l~sg~~dg~i~vw~~~~-----~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~  361 (563)
                      .++++|+.|+.+++|+...     .....+.+|........+. .+..+..+..|.....|+............+...+.
T Consensus       110 ~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (340)
T d1tbga_         110 NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFL-DDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVM  188 (340)
T ss_dssp             SEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEE-ETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEE
T ss_pred             eeeeeecccceeecccccccccccccceecccccccccccccc-cccccccccccccccccccccccccccccccceeEe
Confidence            9999999999999999643     2345677788777666554 456788888999999999887776666666666666


Q ss_pred             EEecC-CCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeee--cc
Q 008496          362 DVDWR-NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDL--RE  438 (563)
Q Consensus       362 ~~~~~-~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~--~~  438 (563)
                      ...+. ....+++++.|+.|++|++.+.+++..+.+|.+.|++++|+|++++|++|+.|+.|++|+++....+..+  ..
T Consensus       189 ~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~  268 (340)
T d1tbga_         189 SLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDN  268 (340)
T ss_dssp             EEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTT
T ss_pred             eeccccccceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeeccccccccccccc
Confidence            66554 4556788999999999999999999999999999999999999999999999999999999988876554  45


Q ss_pred             cCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 008496          439 HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIW  518 (563)
Q Consensus       439 ~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw  518 (563)
                      +...|.+++|+|++.         +|++|+.||.|++||+.+++++..+.+|..+|++++|+||+++|||||.||.|+||
T Consensus       269 ~~~~i~~~~~s~~~~---------~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iW  339 (340)
T d1tbga_         269 IICGITSVSFSKSGR---------LLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW  339 (340)
T ss_dssp             CCSCEEEEEECSSSC---------EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSCEEEE
T ss_pred             ccCceEEEEECCCCC---------EEEEEECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEccCCEEEEe
Confidence            677899999999875         78999999999999999999999999999999999999999999999999999999


Q ss_pred             e
Q 008496          519 S  519 (563)
Q Consensus       519 ~  519 (563)
                      |
T Consensus       340 d  340 (340)
T d1tbga_         340 N  340 (340)
T ss_dssp             C
T ss_pred             C
Confidence            7

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=2.5e-38  Score=307.87  Aligned_cols=275  Identities=21%  Similarity=0.330  Sum_probs=240.0

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCeEEEEEcC-CceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCcee--E
Q 008496          275 KDVTTLDWNGEGTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWK--Q  351 (563)
Q Consensus       275 ~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~--~  351 (563)
                      +.+..++++|+|+.|+.+. ++.+.+|+.. +.....+.+|..+|++++|+|+|++|++|+.||+|++||+.++...  .
T Consensus        18 ~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~   96 (311)
T d1nr0a1          18 GTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKT   96 (311)
T ss_dssp             TCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEE
T ss_pred             CCeEEEEEcCCCCEEEEEe-CCEEEEEECCCCceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeecccccccc
Confidence            3466789999999999986 5679999986 4566778999999999999999999999999999999999887643  4


Q ss_pred             EeeecccCeEEEecCCCc-eEEEEeC--CCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCE-EEEEeCCCcEEEEeC
Q 008496          352 QFEFHSGPTLDVDWRNNV-SFATSST--DNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSL-LASCSDDVTAKIWNM  427 (563)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~-~~~~~~~--d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~-las~s~dg~i~iwd~  427 (563)
                      .+..|..++.++.|..+. .+++++.  +..+.+|++...+++..+.+|...|++++|+|++++ |++|+.|+.|++||+
T Consensus        97 ~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~  176 (311)
T d1nr0a1          97 TIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEG  176 (311)
T ss_dssp             EEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEET
T ss_pred             ccccccCccccccccccccccccccccccccccccccccccccccccccccccccccccccceeeecccccccccccccc
Confidence            567788999999998765 4555554  456899999999999999999999999999999985 889999999999999


Q ss_pred             CCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEec-------CCCCCEEEEEEc
Q 008496          428 KQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLN-------GHREPVYSLAFS  500 (563)
Q Consensus       428 ~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-------~h~~~i~~l~~s  500 (563)
                      ++.+....+..|...|+++.|+|++.         +|++++.|+.|++||+.++..+..+.       +|..+|++++|+
T Consensus       177 ~~~~~~~~~~~~~~~i~~v~~~p~~~---------~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s  247 (311)
T d1nr0a1         177 PPFKFKSTFGEHTKFVHSVRYNPDGS---------LFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWS  247 (311)
T ss_dssp             TTBEEEEEECCCSSCEEEEEECTTSS---------EEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEEC
T ss_pred             cccccccccccccccccccccCcccc---------ccccccccccccccccccccccccccccccccccccccccccccC
Confidence            99999999999999999999999875         78999999999999999988877653       588899999999


Q ss_pred             CCCCEEEEEeCCCcEEEEecCCCeeEEEEecCC----CEEEEEEcCCCCEEEEEECCCeEEEEEe
Q 008496          501 PTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNG----GIFEVCWNKEGDKIAACFANHTVCVLDF  561 (563)
Q Consensus       501 pdg~~lasgs~dg~v~iw~~~~~~~~~~~~~~~----~i~~l~w~~~g~~la~~~~~~~v~v~~~  561 (563)
                      |+|++|++|+.||.|+|||++++++++++..+.    .+.++.|+  ++.|++++.||.|.+||.
T Consensus       248 ~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~~--~~~l~s~s~dG~i~~wd~  310 (311)
T d1nr0a1         248 PDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWT--KQALVSISANGFINFVNP  310 (311)
T ss_dssp             TTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEEC--SSCEEEEETTCCEEEEET
T ss_pred             CCCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCccceEEEEEec--CCEEEEEECCCEEEEEeC
Confidence            999999999999999999999999999987543    34556665  557899999999999995

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=7.6e-38  Score=313.77  Aligned_cols=310  Identities=20%  Similarity=0.355  Sum_probs=251.7

Q ss_pred             EEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcC-CceeE
Q 008496          231 ASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTN-GDLKC  309 (563)
Q Consensus       231 atgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~-~~~~~  309 (563)
                      +.+..++...+|+......        .. ..+.+.    ..|...|+||+|+|+|++|++|+ |+.|+||+.. +....
T Consensus        32 ~~~~~~~~~~~~~~~~~~~--------~~-~~l~~~----~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~   97 (388)
T d1erja_          32 LKKQTNDYYILYNPALPRE--------ID-VELHKS----LDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVA   97 (388)
T ss_dssp             SEEECSSCEEEECTTSCCC--------EE-EEEEEE----EECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEE
T ss_pred             cccCCCCcEEEeCCCCCcc--------ee-eeeEee----CCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEe
Confidence            3556777888887543211        01 111111    23678899999999999999987 8999999975 33333


Q ss_pred             ee------------------ccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecCCC-ce
Q 008496          310 TL------------------SKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNN-VS  370 (563)
Q Consensus       310 ~~------------------~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~  370 (563)
                      .+                  ..|...|++++|+|++++|++|+.||+|++||..+++....+..|...+..+.|..+ ..
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  177 (388)
T d1erja_          98 RLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDK  177 (388)
T ss_dssp             EECC-----------------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSE
T ss_pred             eecccccccccccccccccccCCCCCEEEEEECCCCCcceeccccccccccccccccccccccccccccccccccccccc
Confidence            32                  356778999999999999999999999999999999999888889999999988654 56


Q ss_pred             EEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeee-------cccCCCE
Q 008496          371 FATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDL-------REHSKEI  443 (563)
Q Consensus       371 ~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~-------~~~~~~i  443 (563)
                      +++++.++.+++|+............+...+..+.+.+++++|++|+.|+.|++|+..++..+..+       ..|...|
T Consensus       178 ~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v  257 (388)
T d1erja_         178 LVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSV  257 (388)
T ss_dssp             EEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCE
T ss_pred             ccccccceeeeeeeccccccccccccccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCE
Confidence            788899999999999988877777766665555555568999999999999999999988776554       3578899


Q ss_pred             EEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCe------------EEEEecCCCCCEEEEEEcCCCCEEEEEeC
Q 008496          444 YTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK------------LLYSLNGHREPVYSLAFSPTGEYLASGSL  511 (563)
Q Consensus       444 ~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~------------~~~~~~~h~~~i~~l~~spdg~~lasgs~  511 (563)
                      +++.|+|++.         +|++|+.||.|++||++.+.            +......|...|++++|+|+|++|++|+.
T Consensus       258 ~~l~~s~~~~---------~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~  328 (388)
T d1erja_         258 YSVVFTRDGQ---------SVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSK  328 (388)
T ss_dssp             EEEEECTTSS---------EEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEET
T ss_pred             EEEEECCCCC---------EEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeC
Confidence            9999999875         78999999999999987543            34455678899999999999999999999


Q ss_pred             CCcEEEEecCCCeeEEEEecC-CCEEEEE------EcCCCCEEEEEECCCeEEEEEeeC
Q 008496          512 DKSMHIWSLKEGKIVKTYTGN-GGIFEVC------WNKEGDKIAACFANHTVCVLDFRM  563 (563)
Q Consensus       512 dg~v~iw~~~~~~~~~~~~~~-~~i~~l~------w~~~g~~la~~~~~~~v~v~~~~~  563 (563)
                      ||.|++||+.+++++.++.++ +.|.+++      |+|+|++||+|+.||+|+||++++
T Consensus       329 dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~k  387 (388)
T d1erja_         329 DRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK  387 (388)
T ss_dssp             TSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred             CCEEEEEECCCCcEEEEEeCCCCCEEEEEEecCcccCCCCCEEEEEeCCCEEEEEeeee
Confidence            999999999999999999874 4688876      567999999999999999999974

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=4.3e-38  Score=306.27  Aligned_cols=280  Identities=23%  Similarity=0.316  Sum_probs=236.5

Q ss_pred             CCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEEeC
Q 008496          215 TSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSY  294 (563)
Q Consensus       215 ~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~  294 (563)
                      .+.+.+++++|+|+.||.++ ++.+.+|++.+....             ..+    ..|...|++++|+|+|++|++|+.
T Consensus        17 r~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~~-------------~~~----~~H~~~v~~~~~sp~g~~latg~~   78 (311)
T d1nr0a1          17 RGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDT-------------EIY----TEHSHQTTVAKTSPSGYYCASGDV   78 (311)
T ss_dssp             TTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCC-------------EEE----CCCSSCEEEEEECTTSSEEEEEET
T ss_pred             CCCeEEEEEcCCCCEEEEEe-CCEEEEEECCCCcee-------------EEE----cCCCCCEEEEEEeCCCCeEecccc
Confidence            34566789999999999985 567999998764321             111    235678999999999999999999


Q ss_pred             CCeEEEEEcCCc---eeEeeccCCCCEEEEEeCCCCCEEEEeeC--CCcEEEEECCCCceeEEeeecccCeEEEecCCC-
Q 008496          295 DGQARIWSTNGD---LKCTLSKHKGPIFSLKWNKKGDYLLTGSC--DKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNN-  368 (563)
Q Consensus       295 dg~i~vw~~~~~---~~~~~~~h~~~V~~l~~~~~~~~l~s~s~--D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-  368 (563)
                      ||.|+||+....   ....+..|.++|.+++|+|++++|++++.  ++.+++|++.+++....+..|...+.++.|.++ 
T Consensus        79 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~  158 (311)
T d1nr0a1          79 HGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSR  158 (311)
T ss_dssp             TSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSS
T ss_pred             CceEeeeeeeccccccccccccccCccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            999999997643   34568889999999999999999999876  456999999999988888889999999998754 


Q ss_pred             -ceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeec-------ccC
Q 008496          369 -VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLR-------EHS  440 (563)
Q Consensus       369 -~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~-------~~~  440 (563)
                       ..+++++.|+.|++|++.+.+....+.+|...|+++.|+|++++|++|+.|+.|++||+.++..+..+.       +|.
T Consensus       159 ~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~  238 (311)
T d1nr0a1         159 PFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHS  238 (311)
T ss_dssp             SCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSS
T ss_pred             eeeecccccccccccccccccccccccccccccccccccCcccccccccccccccccccccccccccccccccccccccc
Confidence             357889999999999999999999999999999999999999999999999999999999887765543       588


Q ss_pred             CCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCC-CEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 008496          441 KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHRE-PVYSLAFSPTGEYLASGSLDKSMHIWS  519 (563)
Q Consensus       441 ~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~-~i~~l~~spdg~~lasgs~dg~v~iw~  519 (563)
                      ..|++++|+|++.         +|++|+.||+|+|||+++++++.++..|.. ....+.+.+++.+|++++.||.|++||
T Consensus       239 ~~V~~~~~s~~~~---------~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~~~~~l~s~s~dG~i~~wd  309 (311)
T d1nr0a1         239 GSVFGLTWSPDGT---------KIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVN  309 (311)
T ss_dssp             SCEEEEEECTTSS---------EEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEE
T ss_pred             ccccccccCCCCC---------EEEEEeCCCeEEEEECCCCcEEEEEECCCCccceEEEEEecCCEEEEEECCCEEEEEe
Confidence            8999999999875         789999999999999999999998876643 223334444566899999999999999


Q ss_pred             cC
Q 008496          520 LK  521 (563)
Q Consensus       520 ~~  521 (563)
                      .+
T Consensus       310 ~d  311 (311)
T d1nr0a1         310 PE  311 (311)
T ss_dssp             TT
T ss_pred             CC
Confidence            74

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.3e-38  Score=316.45  Aligned_cols=285  Identities=18%  Similarity=0.265  Sum_probs=228.3

Q ss_pred             CceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEEeCC
Q 008496          216 SEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYD  295 (563)
Q Consensus       216 ~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~d  295 (563)
                      .+|+|++|||+|++||+|+.|+.|+||++.++..           .....+.    .|..+|++++|+|++++|++|+.|
T Consensus         8 ~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~-----------~~~~~l~----gH~~~V~~l~fsp~~~~l~s~s~D   72 (371)
T d1k8kc_           8 EPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKW-----------VQVHELK----EHNGQVTGVDWAPDSNRIVTCGTD   72 (371)
T ss_dssp             SCCCEEEECTTSSEEEEECSSSEEEEEEEETTEE-----------EEEEEEE----CCSSCEEEEEEETTTTEEEEEETT
T ss_pred             CCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCE-----------EEEEEec----CCCCCEEEEEECCCCCEEEEEECC
Confidence            6799999999999999999999999999865321           1122222    356789999999999999999999


Q ss_pred             CeEEEEEcCCc---eeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecCCCceEE
Q 008496          296 GQARIWSTNGD---LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFA  372 (563)
Q Consensus       296 g~i~vw~~~~~---~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  372 (563)
                      +.|+||+....   ....+.+|..+|++++|+|++++|++|+.|+++++|++.........                   
T Consensus        73 ~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~-------------------  133 (371)
T d1k8kc_          73 RNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVC-------------------  133 (371)
T ss_dssp             SCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEE-------------------
T ss_pred             CeEEEEeecccccccccccccccccccccccccccccceeecccCcceeeeeecccccccc-------------------
Confidence            99999998643   23356789999999999999999999999999999987654321110                   


Q ss_pred             EEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCC------------------ceee
Q 008496          373 TSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD------------------KYVH  434 (563)
Q Consensus       373 ~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~------------------~~~~  434 (563)
                                        .....+|...|.+++|+|++++||+|+.|+++++|+....                  ..+.
T Consensus       134 ------------------~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (371)
T d1k8kc_         134 ------------------KHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMF  195 (371)
T ss_dssp             ------------------EEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEE
T ss_pred             ------------------cccccccccccccccccccccceeccccCcEEEEEeeccCccccccccccccccccceeeee
Confidence                              1234568889999999999999999999999999997542                  2445


Q ss_pred             eecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCc
Q 008496          435 DLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKS  514 (563)
Q Consensus       435 ~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~  514 (563)
                      ....|...|++++|+|++.         +|++++.|+.|++||+..++.+..+..|..+|.+++|+||+++||+|+ |+.
T Consensus       196 ~~~~~~~~v~~~~~s~~g~---------~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~s~~fs~d~~~la~g~-d~~  265 (371)
T d1k8kc_         196 ESSSSCGWVHGVCFSANGS---------RVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGH-DCF  265 (371)
T ss_dssp             ECCCCSSCEEEEEECSSSS---------EEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEET-TSS
T ss_pred             eccCccCcEEEEEeecccc---------cccccccCCcceEEeeecccceeeeecccccceeeeecCCCCEEEEEc-CCc
Confidence            5677889999999999875         789999999999999999999999999999999999999999888765 666


Q ss_pred             EEEEecC--CCeeEEEE----------------------------------------ecCCCEEEEEEcCCC----CEEE
Q 008496          515 MHIWSLK--EGKIVKTY----------------------------------------TGNGGIFEVCWNKEG----DKIA  548 (563)
Q Consensus       515 v~iw~~~--~~~~~~~~----------------------------------------~~~~~i~~l~w~~~g----~~la  548 (563)
                      +++|...  .+++....                                        .+.+.|.++++.+.+    ..+|
T Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~I~~i~~~~~~~~~~~~~~  345 (371)
T d1k8kc_         266 PVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFC  345 (371)
T ss_dssp             CEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEE
T ss_pred             eEEEEeeCCCceEEEeeeecCccccccccccceeeEecccceeEEeccccccceecccccCCEEEEEEeCCCCcceEEEE
Confidence            6665543  32221000                                        012358889987755    4689


Q ss_pred             EEECCCeEEEEEee
Q 008496          549 ACFANHTVCVLDFR  562 (563)
Q Consensus       549 ~~~~~~~v~v~~~~  562 (563)
                      +|+.||.|+|||++
T Consensus       346 T~g~Dg~v~iW~~~  359 (371)
T d1k8kc_         346 TTGMDGGMSIWDVR  359 (371)
T ss_dssp             EEETTSEEEEEEHH
T ss_pred             EEcCCCeEEEEeCC
Confidence            99999999999985

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=3e-37  Score=302.69  Aligned_cols=280  Identities=21%  Similarity=0.377  Sum_probs=248.2

Q ss_pred             cCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcC-CceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCc--
Q 008496          272 EKSKDVTTLDWNGEGTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEE--  348 (563)
Q Consensus       272 ~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~--  348 (563)
                      +|...|++++|+|++++|+||+.||.|+|||.. +.....+..|..+|.+++|+|++.++++|+.|+.+++|+.....  
T Consensus        53 GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~~~  132 (340)
T d1tbga_          53 GHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGN  132 (340)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEESSSSCSC
T ss_pred             CCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccceeecccccccccc
Confidence            356789999999999999999999999999975 56677889999999999999999999999999999999976543  


Q ss_pred             --eeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEe
Q 008496          349 --WKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWN  426 (563)
Q Consensus       349 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd  426 (563)
                        ....+..+........+.....+.....+.....+.............+...+.+..+.+.+.++++|+.|+.|++||
T Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d  212 (340)
T d1tbga_         133 VRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWD  212 (340)
T ss_dssp             CCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTTEEEEEE
T ss_pred             cccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeeccccccceeEEeecCceEEEEE
Confidence              333444555555555666667778888888888888887777777777888999999999999999999999999999


Q ss_pred             CCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEe--cCCCCCEEEEEEcCCCC
Q 008496          427 MKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSL--NGHREPVYSLAFSPTGE  504 (563)
Q Consensus       427 ~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~--~~h~~~i~~l~~spdg~  504 (563)
                      +++++++..+.+|...|++++|+|++.         +|++|+.||.|++||+.....+..+  ..+..+|.+++|+|+|+
T Consensus       213 ~~~~~~~~~~~~h~~~i~~v~~~p~~~---------~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~  283 (340)
T d1tbga_         213 VREGMCRQTFTGHESDINAICFFPNGN---------AFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGR  283 (340)
T ss_dssp             TTTTEEEEEECCCSSCEEEEEECTTSS---------EEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSC
T ss_pred             CCCCcEEEEEeCCCCCeEEEEECCCCC---------EEEEEeCCCeEEEEeecccccccccccccccCceEEEEECCCCC
Confidence            999999999999999999999999875         7899999999999999998887665  45677899999999999


Q ss_pred             EEEEEeCCCcEEEEecCCCeeEEEEec-CCCEEEEEEcCCCCEEEEEECCCeEEEEE
Q 008496          505 YLASGSLDKSMHIWSLKEGKIVKTYTG-NGGIFEVCWNKEGDKIAACFANHTVCVLD  560 (563)
Q Consensus       505 ~lasgs~dg~v~iw~~~~~~~~~~~~~-~~~i~~l~w~~~g~~la~~~~~~~v~v~~  560 (563)
                      +|++|+.||.|+|||+.+++++.++.+ .+.|.+++|+|+|++||+|+.||.|.|||
T Consensus       284 ~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         284 LLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             EEEEEECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence            999999999999999999999999986 46799999999999999999999999997

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.4e-36  Score=293.86  Aligned_cols=318  Identities=24%  Similarity=0.427  Sum_probs=259.1

Q ss_pred             ceeEecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCC
Q 008496          207 DVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG  286 (563)
Q Consensus       207 ~~~~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g  286 (563)
                      ...+|+||++.|.+ +++++|++|||||.||+|+|||+.+++.             +..+    ..|...|++++|+++ 
T Consensus         8 ~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~-------------~~~~----~~h~~~V~~v~~~~~-   68 (342)
T d2ovrb2           8 SPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKC-------------LRTL----VGHTGGVWSSQMRDN-   68 (342)
T ss_dssp             CCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCE-------------EEEC----CCCSSCEEEEEEETT-
T ss_pred             cCEEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCE-------------EEEE----eCCCCCEEEEEeCCC-
Confidence            34689999999875 3777899999999999999999976542             1222    235678999999875 


Q ss_pred             CEEEEEeCCCeEEEEEcCCcee-EeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEec
Q 008496          287 TLLATGSYDGQARIWSTNGDLK-CTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDW  365 (563)
Q Consensus       287 ~~l~sg~~dg~i~vw~~~~~~~-~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~  365 (563)
                       +|++|+.|+.+++|+...... .....+...+....+  ....+..+..|+++.+|+..++.....+........ ...
T Consensus        69 -~l~s~s~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~-~~~  144 (342)
T d2ovrb2          69 -IIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHL--HEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVR-CVQ  144 (342)
T ss_dssp             -EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEE-EEE
T ss_pred             -ccccceecccccccccccccceecccccceeEeeeec--ccccccccccceeEEEeecccccceeeeecccccce-eec
Confidence             999999999999999876443 334445555655544  346788899999999999999887766654443332 233


Q ss_pred             CCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEE
Q 008496          366 RNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYT  445 (563)
Q Consensus       366 ~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~  445 (563)
                      .....++.++.|+.|++|+......+..+.+|...+.++.+  ++.+|++|+.||.|++||+..++.+..+..|...+.+
T Consensus       145 ~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~  222 (342)
T d2ovrb2         145 YDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSG  222 (342)
T ss_dssp             ECSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEE
T ss_pred             cccceeeeecCCCeEEEeecccceeeEEEcCcccccccccC--CCCEEEEEeCCCeEEEeecccceeeeEecccccceeE
Confidence            45567888899999999999999999999999887766655  6889999999999999999999999999999999999


Q ss_pred             EEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecC---CCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCC
Q 008496          446 IRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNG---HREPVYSLAFSPTGEYLASGSLDKSMHIWSLKE  522 (563)
Q Consensus       446 ~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~---h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~  522 (563)
                      +.++++           +|++|+.||.|++||+...+....+..   |...+.+++|+  +.++++|+.||.|+|||+++
T Consensus       223 ~~~~~~-----------~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~s~Dg~i~iwd~~t  289 (342)
T d2ovrb2         223 MELKDN-----------ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKT  289 (342)
T ss_dssp             EEEETT-----------EEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTT
T ss_pred             EecCCC-----------EEEEEcCCCEEEEEecccccccccccccceeeeceeecccC--CCeeEEEcCCCEEEEEECCC
Confidence            988763           789999999999999998888777754   55677777775  46999999999999999999


Q ss_pred             CeeEEEEec------CCCEEEEEEcCCCCEEEEEECCCe----EEEEEee
Q 008496          523 GKIVKTYTG------NGGIFEVCWNKEGDKIAACFANHT----VCVLDFR  562 (563)
Q Consensus       523 ~~~~~~~~~------~~~i~~l~w~~~g~~la~~~~~~~----v~v~~~~  562 (563)
                      +++++.+..      .+.|++++|+|+|..||+|+.||+    +.||||.
T Consensus       290 g~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~  339 (342)
T d2ovrb2         290 GEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFD  339 (342)
T ss_dssp             CCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECC
T ss_pred             CCEEEEEecccCCCCCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEeCC
Confidence            999988742      345999999999999999999985    9999986

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.4e-37  Score=304.56  Aligned_cols=319  Identities=22%  Similarity=0.344  Sum_probs=245.6

Q ss_pred             eeEecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCC
Q 008496          208 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT  287 (563)
Q Consensus       208 ~~~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~  287 (563)
                      ..+|+||.+.|.+| +++++++||||+.|++|+|||+.+++.             +..+.    .|...|++++|+++ .
T Consensus         5 ~~tL~GH~~~vitc-~~~~~~~l~tgs~Dg~i~vWd~~~~~~-------------~~~l~----~H~~~V~~l~~s~~-~   65 (355)
T d1nexb2           5 RTTLRGHMTSVITC-LQFEDNYVITGADDKMIRVYDSINKKF-------------LLQLS----GHDGGVWALKYAHG-G   65 (355)
T ss_dssp             EEEEECCSSSCEEE-EEEETTEEEEEETTTEEEEEETTTTEE-------------EEEEE----CCSSCEEEEEEETT-T
T ss_pred             cEEECCcCCCcEEE-EEECCCEEEEEeCCCeEEEEECCCCcE-------------EEEEE----CCCCCEEEEEEcCC-C
Confidence            46799999887432 455688999999999999999876531             22222    35678999999985 5


Q ss_pred             EEEEEeCCCeEEEEEcCCceeE-ee--ccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeee---------
Q 008496          288 LLATGSYDGQARIWSTNGDLKC-TL--SKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEF---------  355 (563)
Q Consensus       288 ~l~sg~~dg~i~vw~~~~~~~~-~~--~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~---------  355 (563)
                      +|++|+.||.|++|+....... ..  ..+...+....+++++.++++++.|++|++||+.+.........         
T Consensus        66 ~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~  145 (355)
T d1nexb2          66 ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFH  145 (355)
T ss_dssp             EEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEES
T ss_pred             EEEEEecccccccccccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceecccee
Confidence            8999999999999998754322 22  22334456677889999999999999999999987654332211         


Q ss_pred             --------------cccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCc
Q 008496          356 --------------HSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVT  421 (563)
Q Consensus       356 --------------~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~  421 (563)
                                    +...+... ..+...++.+..|+.+++|++...+.+..+.++...+.++.|+|++.++++++.|+.
T Consensus       146 ~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  224 (355)
T d1nexb2         146 TPEENPYFVGVLRGHMASVRTV-SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTT  224 (355)
T ss_dssp             CTTTCTTEEEEEECCSSCEEEE-EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSC
T ss_pred             ccccccceeeeeeecccccccc-ccccceeeeecccceeeeeecccccceeeeeccccccccccccccceeeecccccce
Confidence                          11111111 123456788889999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEE-EEc
Q 008496          422 AKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSL-AFS  500 (563)
Q Consensus       422 i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l-~~s  500 (563)
                      |++||..++..+..+.+|...|.++.|++.           +|++|+.||.|++||+.++......  |...+.++ .|+
T Consensus       225 i~i~d~~~~~~~~~~~~h~~~v~~~~~~~~-----------~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~~~~~~~~  291 (355)
T d1nexb2         225 IRIWDLENGELMYTLQGHTALVGLLRLSDK-----------FLVSAAADGSIRGWDANDYSRKFSY--HHTNLSAITTFY  291 (355)
T ss_dssp             EEEEETTTCCEEEEECCCSSCCCEEEECSS-----------EEEEECTTSEEEEEETTTCCEEEEE--ECTTCCCCCEEE
T ss_pred             EEeeeccccccccccccccccccccccccc-----------eeeeeecccccccccccccceeccc--ccCCceEEEEEc
Confidence            999999999999999999999999999753           6899999999999999988765443  45555555 567


Q ss_pred             CCCCEEEEEeCCCcEEEEecCCCeeEEEE-ec-CCCEEEEEEcCCCCEEEEEECCCeEEEEEe
Q 008496          501 PTGEYLASGSLDKSMHIWSLKEGKIVKTY-TG-NGGIFEVCWNKEGDKIAACFANHTVCVLDF  561 (563)
Q Consensus       501 pdg~~lasgs~dg~v~iw~~~~~~~~~~~-~~-~~~i~~l~w~~~g~~la~~~~~~~v~v~~~  561 (563)
                      |++++|++|+ ||.|+|||+++|+++... .+ .+.|.+++|+|+ ..+++++.||++.||.+
T Consensus       292 ~~~~~l~~g~-d~~i~vwd~~tg~~~~~~~~~~~~~V~~v~~~~~-~~~~~~s~dg~~~l~~~  352 (355)
T d1nexb2         292 VSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK-TLVAAVEKDGQSFLEIL  352 (355)
T ss_dssp             ECSSEEEEEE-TTEEEEEETTTCCBCCSCTTTTCSEEEEEEEETT-EEEEEEESSSCEEEEEE
T ss_pred             CCCCEEEEEe-CCEEEEEECCCCCEEEEEecCCCCCEEEEEEcCC-eEEEEEECCCcEEEEEE
Confidence            8888877765 899999999999987543 33 457999999987 47778889998666543

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=9.8e-37  Score=294.53  Aligned_cols=282  Identities=20%  Similarity=0.290  Sum_probs=222.8

Q ss_pred             eeEecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCC
Q 008496          208 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT  287 (563)
Q Consensus       208 ~~~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~  287 (563)
                      ..++.||...|++++|+|++++||||+.|++|++||+.++...             +..   ...+...|++++|+|+|.
T Consensus         5 ~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~-------------~~~---~~~h~~~v~~v~~~~~g~   68 (299)
T d1nr0a2           5 DQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISN-------------RVF---PDVHATMITGIKTTSKGD   68 (299)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEE-------------ECS---SCSCSSCEEEEEECTTSC
T ss_pred             ceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEE-------------EEE---cCCCCCcEEEEEeeccce
Confidence            4688999999999999999999999999999999999765421             111   123467899999999997


Q ss_pred             EEEEEeCCCeEEEEEcCCce----eEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEE
Q 008496          288 LLATGSYDGQARIWSTNGDL----KCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDV  363 (563)
Q Consensus       288 ~l~sg~~dg~i~vw~~~~~~----~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~  363 (563)
                      + ++++.|+.+++|+..+..    ......|...+.++.|+|++..++++ .++.+++|+....  ..            
T Consensus        69 ~-~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~-~~~~i~~~~~~~~--~~------------  132 (299)
T d1nr0a2          69 L-FTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAA-CYKHIAIYSHGKL--TE------------  132 (299)
T ss_dssp             E-EEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEE-ESSEEEEEETTEE--EE------------
T ss_pred             e-ecccceeeEEEeccCCcccccccccccccccccccccccccccccccc-ccccccccccccc--cc------------
Confidence            5 566789999999976432    22345678889999999999876655 4678999984321  00            


Q ss_pred             ecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceee-eecccCCC
Q 008496          364 DWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVH-DLREHSKE  442 (563)
Q Consensus       364 ~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~-~~~~~~~~  442 (563)
                                                   ..  ....+.+++|+|++++|++|+.|+.|++||+.+..... ....|...
T Consensus       133 -----------------------------~~--~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~  181 (299)
T d1nr0a2         133 -----------------------------VP--ISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAE  181 (299)
T ss_dssp             -----------------------------EE--CSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSC
T ss_pred             -----------------------------cc--ccccccccccccccccccccccccccccccccccccccccccccccc
Confidence                                         00  12346789999999999999999999999998776543 34568899


Q ss_pred             EEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEE---EecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 008496          443 IYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLY---SLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWS  519 (563)
Q Consensus       443 i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~---~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~  519 (563)
                      |++++|+|++.         +|++++.|+.|++||+.++..+.   .+.+|..+|++++|+|++++||+|+.||.|+|||
T Consensus       182 i~~~~~~~~~~---------~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd  252 (299)
T d1nr0a2         182 ITSVAFSNNGA---------FLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWN  252 (299)
T ss_dssp             EEEEEECTTSS---------EEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             ccccccccccc---------cccccccccccccccccccccccccccccccccccccccccccccceEEEcCCCEEEEEE
Confidence            99999999875         78999999999999998776543   4567899999999999999999999999999999


Q ss_pred             cCCCeeEEEEe--c--CCCEEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496          520 LKEGKIVKTYT--G--NGGIFEVCWNKEGDKIAACFANHTVCVLDFR  562 (563)
Q Consensus       520 ~~~~~~~~~~~--~--~~~i~~l~w~~~g~~la~~~~~~~v~v~~~~  562 (563)
                      +.++.......  .  ...+..+.| ++++.|++|+.|+.|+|||+.
T Consensus       253 ~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~s~D~~i~iWdl~  298 (299)
T d1nr0a2         253 MNKPSDHPIIIKGAHAMSSVNSVIW-LNETTIVSAGQDSNIKFWNVP  298 (299)
T ss_dssp             TTCTTSCCEEETTSSTTSCEEEEEE-EETTEEEEEETTSCEEEEECC
T ss_pred             CCCCCcceEEEecCCCCCcEEEEEE-CCCCEEEEEeCCCEEEEEecc
Confidence            98765433222  1  234666666 567799999999999999974

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-34  Score=285.14  Aligned_cols=243  Identities=19%  Similarity=0.347  Sum_probs=209.5

Q ss_pred             EecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEE
Q 008496          210 ILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLL  289 (563)
Q Consensus       210 ~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l  289 (563)
                      ...+|.+.|.+++|+|++++|++|+.|++|++|++.....           ......    ..+...|.+++|+|++.++
T Consensus        92 ~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~-----------~~~~~~----~~~~~~v~~~~~~~~~~~l  156 (337)
T d1gxra_          92 DCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTP-----------RIKAEL----TSSAPACYALAISPDSKVC  156 (337)
T ss_dssp             ECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC-------------EEEEEE----ECSSSCEEEEEECTTSSEE
T ss_pred             eecCCCCcEEEEEEcCCCCEEEEeeccccccccccccccc-----------cccccc----ccccccccccccccccccc
Confidence            4568999999999999999999999999999999864321           011111    2345679999999999999


Q ss_pred             EEEeCCCeEEEEEcC-CceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecCCC
Q 008496          290 ATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNN  368 (563)
Q Consensus       290 ~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  368 (563)
                      ++++.|+.+++|+.. +........|..+|.+++|++++..+++|+.|+.+++||+++++.+..+               
T Consensus       157 ~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~---------------  221 (337)
T d1gxra_         157 FSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQH---------------  221 (337)
T ss_dssp             EEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE---------------
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceeeccc---------------
Confidence            999999999999976 4556677889999999999999999999999999999999876533221               


Q ss_pred             ceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEEEEE
Q 008496          369 VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRW  448 (563)
Q Consensus       369 ~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~  448 (563)
                                                 .|.+.|.+++|+|++++|++|+.|+.+++||+++.... ....|...|++++|
T Consensus       222 ---------------------------~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-~~~~~~~~i~~v~~  273 (337)
T d1gxra_         222 ---------------------------DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLHLHESCVLSLKF  273 (337)
T ss_dssp             ---------------------------ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EECCCSSCEEEEEE
T ss_pred             ---------------------------ccccceEEEEEcccccccceeccccccccccccccccc-cccccccccceEEE
Confidence                                       25667899999999999999999999999999988765 45678999999999


Q ss_pred             ccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEec
Q 008496          449 SPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSL  520 (563)
Q Consensus       449 ~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~  520 (563)
                      +|++.         +|++|+.||.|++||+.+++++..+. |..+|++++|+|+|++||+|+.||+|+|||+
T Consensus       274 s~~g~---------~l~s~s~Dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         274 AYCGK---------WFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             CTTSS---------EEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             CCCCC---------EEEEEeCCCeEEEEECCCCCEEEEcc-CCCCEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence            99875         78999999999999999999988766 7789999999999999999999999999996

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=3.5e-35  Score=293.17  Aligned_cols=240  Identities=20%  Similarity=0.384  Sum_probs=205.8

Q ss_pred             CCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCc---eeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCcee
Q 008496          274 SKDVTTLDWNGEGTLLATGSYDGQARIWSTNGD---LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWK  350 (563)
Q Consensus       274 ~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~---~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~  350 (563)
                      ..+|+|++|+|+|++||+|+.||.|+||+..+.   ....+.+|.++|.+++|+|++++|++|+.|++|++||+.++...
T Consensus         7 ~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~   86 (371)
T d1k8kc_           7 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWK   86 (371)
T ss_dssp             SSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEE
T ss_pred             CCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecccccc
Confidence            367999999999999999999999999998643   45568899999999999999999999999999999998765433


Q ss_pred             EEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCC
Q 008496          351 QQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD  430 (563)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~  430 (563)
                      .                                       ...+.+|...|.+++|+|+++.|++|+.|+++++|++...
T Consensus        87 ~---------------------------------------~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~  127 (371)
T d1k8kc_          87 P---------------------------------------TLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQE  127 (371)
T ss_dssp             E---------------------------------------EEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETT
T ss_pred             c---------------------------------------ccccccccccccccccccccccceeecccCcceeeeeecc
Confidence            2                                       2234568889999999999999999999999999988655


Q ss_pred             ce----eeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC------------------CeEEEEec
Q 008496          431 KY----VHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL------------------GKLLYSLN  488 (563)
Q Consensus       431 ~~----~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~------------------~~~~~~~~  488 (563)
                      ..    ......|...|++++|+|++.         +|++|+.|++|++||...                  +..+....
T Consensus       128 ~~~~~~~~~~~~~~~~v~~v~~~p~~~---------~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (371)
T d1k8kc_         128 NDWWVCKHIKKPIRSTVLSLDWHPNSV---------LLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESS  198 (371)
T ss_dssp             TTEEEEEEECTTCCSCEEEEEECTTSS---------EEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECC
T ss_pred             ccccccccccccccccccccccccccc---------ceeccccCcEEEEEeeccCccccccccccccccccceeeeeecc
Confidence            43    234567889999999999875         789999999999999753                  34677778


Q ss_pred             CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEecC-CCEEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496          489 GHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGN-GGIFEVCWNKEGDKIAACFANHTVCVLDFR  562 (563)
Q Consensus       489 ~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~~-~~i~~l~w~~~g~~la~~~~~~~v~v~~~~  562 (563)
                      +|...|++++|+|+|++|++|+.|+.|++||+.+++.+..+..+ .+|.+++|+|+|+.||+|+ |+.+.+|.+.
T Consensus       199 ~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~s~~fs~d~~~la~g~-d~~~~~~~~~  272 (371)
T d1k8kc_         199 SSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGH-DCFPVLFTYD  272 (371)
T ss_dssp             CCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEET-TSSCEEEEEE
T ss_pred             CccCcEEEEEeecccccccccccCCcceEEeeecccceeeeecccccceeeeecCCCCEEEEEc-CCceEEEEee
Confidence            89999999999999999999999999999999999988888764 4699999999998888775 6677777653

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=9.5e-34  Score=277.25  Aligned_cols=281  Identities=17%  Similarity=0.298  Sum_probs=219.9

Q ss_pred             ceEEEEECCCCCEEEEeeCCC-cEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECC--CCCEEEEEe
Q 008496          217 EVCACAWSPAGSLLASGSGDS-TARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG--EGTLLATGS  293 (563)
Q Consensus       217 ~V~~~~~sp~~~~latgs~D~-~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~--~g~~l~sg~  293 (563)
                      .+++++|+|++..||.++.++ .++.|+.......        .   .....+   .+...|++++|+|  +|.+|++|+
T Consensus        19 ~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~--------~---~~~~~g---h~~~~v~~v~fsP~~~g~~lasgs   84 (325)
T d1pgua1          19 FTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVP--------P---VVQFTG---HGSSVVTTVKFSPIKGSQYLCSGD   84 (325)
T ss_dssp             CCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSC--------S---EEEECT---TTTSCEEEEEECSSTTCCEEEEEE
T ss_pred             CeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCcc--------c---eEEEeC---CCCCCEEEEEEeeCCCCCEEEEEe
Confidence            356889999999999987665 3566764332210        0   011111   2246799999998  678999999


Q ss_pred             CCCeEEEEEcCC---------ceeEeeccCCCCEEEEEeCCCCCEEEEeeC--CCcEEEEECCCCceeEEeeecccCeEE
Q 008496          294 YDGQARIWSTNG---------DLKCTLSKHKGPIFSLKWNKKGDYLLTGSC--DKTAIVWDVKTEEWKQQFEFHSGPTLD  362 (563)
Q Consensus       294 ~dg~i~vw~~~~---------~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~--D~~v~iwd~~~~~~~~~~~~~~~~~~~  362 (563)
                      .||.|+||+...         .....+..|.++|.+++|++++++|++++.  ++.+++|+..+++              
T Consensus        85 ~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~--------------  150 (325)
T d1pgua1          85 ESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGN--------------  150 (325)
T ss_dssp             TTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCC--------------
T ss_pred             CCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecccc--------------
Confidence            999999998642         122345678999999999999999887764  5677888766543              


Q ss_pred             EecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCE-EEEEeCCCcEEEEeCCCCceeeee---cc
Q 008496          363 VDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSL-LASCSDDVTAKIWNMKQDKYVHDL---RE  438 (563)
Q Consensus       363 ~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~-las~s~dg~i~iwd~~~~~~~~~~---~~  438 (563)
                                                 .+..+.+|...|++++|+|++++ +++++.|+.+++|+....+....+   ..
T Consensus       151 ---------------------------~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~  203 (325)
T d1pgua1         151 ---------------------------SLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHK  203 (325)
T ss_dssp             ---------------------------EEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSC
T ss_pred             ---------------------------cceeeeecccccccccccccccceEEEeecccccccccccccccceecccccC
Confidence                                       33456679999999999999875 678999999999999877665443   45


Q ss_pred             cCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEc---CCCCEEEEEeCCCcE
Q 008496          439 HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFS---PTGEYLASGSLDKSM  515 (563)
Q Consensus       439 ~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s---pdg~~lasgs~dg~v  515 (563)
                      |...|++++|+|++.        .+|++++.||.|++||+++++++..+.+|..++.++.|+   |||++|++|+.|+.|
T Consensus       204 ~~~~v~~v~~~pd~~--------~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i  275 (325)
T d1pgua1         204 QGSFVRDVEFSPDSG--------EFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATI  275 (325)
T ss_dssp             TTCCEEEEEECSTTC--------CEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEE
T ss_pred             CCCccEEeeeccccc--------eeccccccccceeeeeeccccccccccccccccccceeeeeccCCCEEEEEeCCCeE
Confidence            778899999999743        278999999999999999999999999998887766666   789999999999999


Q ss_pred             EEEecCCCeeEEEEecCCC-----EEEEEEcCCCCEEEEEECCCeEEEEEe
Q 008496          516 HIWSLKEGKIVKTYTGNGG-----IFEVCWNKEGDKIAACFANHTVCVLDF  561 (563)
Q Consensus       516 ~iw~~~~~~~~~~~~~~~~-----i~~l~w~~~g~~la~~~~~~~v~v~~~  561 (563)
                      +|||++++++++.+..+..     ...+.|++++ .|++|+.||.|.|||+
T Consensus       276 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         276 RVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNG-RIISLSLDGTLNFYEL  325 (325)
T ss_dssp             EEEETTTTEEEEEEECCTTCGGGCEEEEEEEETT-EEEEEETTSCEEEEET
T ss_pred             EEEECCCCCEEEEEEecCCcccCeEEEEEECCCC-EEEEEECCCEEEEEEC
Confidence            9999999999998865332     3456666554 7788899999999996

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=8.2e-33  Score=267.09  Aligned_cols=254  Identities=26%  Similarity=0.460  Sum_probs=233.8

Q ss_pred             EEEcCCceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecCCC-ceEEEEeCCC
Q 008496          300 IWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNN-VSFATSSTDN  378 (563)
Q Consensus       300 vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~  378 (563)
                      .|.+....+.+|.+|+++|++|+|+|++++|+||+.||+|+|||+.+++.+..+..|...+.++.|.++ ..++++..++
T Consensus         2 ~w~p~~~~~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~   81 (317)
T d1vyhc1           2 EWIPRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADM   81 (317)
T ss_dssp             CCCCCSSCSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             ccCCCCCccEEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeeccccccccccccc
Confidence            466666677789999999999999999999999999999999999999999999999999999999765 5567788888


Q ss_pred             eEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCC
Q 008496          379 MIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNP  458 (563)
Q Consensus       379 ~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~  458 (563)
                      .+..++.........+.+|...+.++.|+|+++.+++++.|+.+++||+.++..+..+..|...+.+++|+|++.     
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  156 (317)
T d1vyhc1          82 TIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGT-----  156 (317)
T ss_dssp             CCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSS-----
T ss_pred             ccccccccccccccccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCC-----
Confidence            999999988888888899999999999999999999999999999999999999999999999999999999875     


Q ss_pred             CCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCC--------------------CEEEEEeCCCcEEEE
Q 008496          459 NQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTG--------------------EYLASGSLDKSMHIW  518 (563)
Q Consensus       459 ~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg--------------------~~lasgs~dg~v~iw  518 (563)
                          +|++++.|+.|++|++.+++.+..+.+|...|.+++|+|++                    .++++|+.|+.|++|
T Consensus       157 ----~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~  232 (317)
T d1vyhc1         157 ----LIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMW  232 (317)
T ss_dssp             ----EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEE
T ss_pred             ----EEEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEE
Confidence                78999999999999999999999999999999999999865                    368999999999999


Q ss_pred             ecCCCeeEEEEec-CCCEEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496          519 SLKEGKIVKTYTG-NGGIFEVCWNKEGDKIAACFANHTVCVLDFR  562 (563)
Q Consensus       519 ~~~~~~~~~~~~~-~~~i~~l~w~~~g~~la~~~~~~~v~v~~~~  562 (563)
                      ++.+++++.++.+ ...|.+++|+|+|++|++|+.||.|.|||++
T Consensus       233 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~  277 (317)
T d1vyhc1         233 DVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYK  277 (317)
T ss_dssp             ETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCT
T ss_pred             ECCCCcEEEEEeCCCCCEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence            9999999998876 4578999999999999999999999999975

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.1e-33  Score=268.17  Aligned_cols=278  Identities=18%  Similarity=0.264  Sum_probs=217.5

Q ss_pred             ceeEecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCC
Q 008496          207 DVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG  286 (563)
Q Consensus       207 ~~~~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g  286 (563)
                      .+.+|.||..+|++++|+|    |+||+.||+|++|++.++.                      ..|...|.+++|++++
T Consensus         5 ~i~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~~----------------------~~h~~~V~~~~~~~~~   58 (287)
T d1pgua2           5 VLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMH----------------------QDHSNLIVSLDNSKAQ   58 (287)
T ss_dssp             EEEEECCCSSCEEEEETTT----TEEEETTSCEEETTTTEEE----------------------CCCCSCEEEEECCSTT
T ss_pred             eeEEECCCCCceEEEEECc----EEEEeCCCeEEEEECCCCC----------------------CCCCCCEEEEEecCCC
Confidence            4678999999999999998    9999999999999975321                      1345679999998765


Q ss_pred             CEEEEEeCCCeEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecC
Q 008496          287 TLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR  366 (563)
Q Consensus       287 ~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~  366 (563)
                       .+++++.|+++++|+....      .....+..+.+++++..++++ .++.+.+|+..++.....+.... +...+...
T Consensus        59 -~~~s~s~D~~v~~w~~~~~------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  129 (287)
T d1pgua2          59 -EYSSISWDDTLKVNGITKH------EFGSQPKVASANNDGFTAVLT-NDDDLLILQSFTGDIIKSVRLNS-PGSAVSLS  129 (287)
T ss_dssp             -CCEEEETTTEEEETTEEEE------ECSSCEEEEEECSSSEEEEEE-TTSEEEEEETTTCCEEEEEECSS-CEEEEEEC
T ss_pred             -eEEEEeecccccccccccc------ccccceeeeeeccCCceEEEe-ecccceeeeccceeeeeeccccc-eeeeeecc
Confidence             5789999999999985321      233456788899888766665 56678899999888877766443 44455554


Q ss_pred             CCceEEEEeCCCeEEEEEcCCCcceeeec-CCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceee-eecccCCCEE
Q 008496          367 NNVSFATSSTDNMIYVCKIGENRPIKTFA-GHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVH-DLREHSKEIY  444 (563)
Q Consensus       367 ~~~~~~~~~~d~~i~~~~~~~~~~~~~~~-~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~-~~~~~~~~i~  444 (563)
                      ....++.+..++.+++|++........+. .|.+.+++++|+|++++|++|+.||.|++||+.++.... .+..|...|.
T Consensus       130 ~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~  209 (287)
T d1pgua2         130 QNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKIN  209 (287)
T ss_dssp             SSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEE
T ss_pred             CcceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCccccccccccccccceeecccccccccccccccccc
Confidence            44444444555689999987655544443 577889999999999999999999999999999887654 4678999999


Q ss_pred             EEEEccCCCCCC-CCCCcEEEEEEeCCCeEEEEeCCC-CeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEec
Q 008496          445 TIRWSPTGSGTN-NPNQQLILASASFDSTVKLWDVEL-GKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSL  520 (563)
Q Consensus       445 ~~~~~p~~~~~~-~~~~~~~l~s~s~dg~i~iwd~~~-~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~  520 (563)
                      +++|+|.+.... ......+|++|+.|++|+|||+++ ++.+..+.+|..+|++++|+|++ .|+++|.||.|++|++
T Consensus       210 ~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         210 AISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGADACIKRWNV  286 (287)
T ss_dssp             EEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETT-EEEEEETTSCEEEEEE
T ss_pred             eeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCC-EEEEEECCCeEEEEEE
Confidence            999999764321 112234789999999999999976 56677788999999999999987 5889999999999986

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.7e-32  Score=274.27  Aligned_cols=310  Identities=20%  Similarity=0.341  Sum_probs=216.1

Q ss_pred             eEecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeeccccc-CCCCeEEEEECC-CC
Q 008496          209 TILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNE-KSKDVTTLDWNG-EG  286 (563)
Q Consensus       209 ~~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~V~~l~~s~-~g  286 (563)
                      ...++|.+.|+++++++  ++|+|||.|++||||+.........     ... ........... +......+.+++ ++
T Consensus         8 ~~~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~-----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (393)
T d1sq9a_           8 NAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENP-----KDK-SYSHFVHKSGLHHVDVLQAIERDAFEL   79 (393)
T ss_dssp             EESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCG-----GGG-EEEEECCTTCEEEEEEEEEEETTTEEE
T ss_pred             ecCCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcc-----cce-eEeeeeccCCceEeeeEeeeccCCCCC
Confidence            56789999999999875  6899999999999999765432110     000 01110000000 000112222222 34


Q ss_pred             CEEEEEeCCCeEEEEEcCCc-----eeE------eeccCCCCEEEEEeCCC-----CCEEEEeeCCCcEEEEECCCCcee
Q 008496          287 TLLATGSYDGQARIWSTNGD-----LKC------TLSKHKGPIFSLKWNKK-----GDYLLTGSCDKTAIVWDVKTEEWK  350 (563)
Q Consensus       287 ~~l~sg~~dg~i~vw~~~~~-----~~~------~~~~h~~~V~~l~~~~~-----~~~l~s~s~D~~v~iwd~~~~~~~  350 (563)
                      .++++++.||.+++|+....     ...      ....+...++.++|.++     +.++++++.|+++++|++......
T Consensus        80 ~~~~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~  159 (393)
T d1sq9a_          80 CLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADE  159 (393)
T ss_dssp             EEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSH
T ss_pred             cEEEEEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcc
Confidence            67889999999999985321     110      11235667888888775     467899999999999997543210


Q ss_pred             E-EeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCC
Q 008496          351 Q-QFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQ  429 (563)
Q Consensus       351 ~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~  429 (563)
                      . .+..+.....                   .+.     ........+...+++++|+|++ +||+|+.|++|+|||+.+
T Consensus       160 ~~~~~~~~~~~~-------------------~~~-----~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~  214 (393)
T d1sq9a_         160 SNSLTLNWSPTL-------------------ELQ-----GTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELST  214 (393)
T ss_dssp             HHHTTTCCCCEE-------------------EEE-----EEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTT
T ss_pred             cceeeeeeccce-------------------ecc-----cceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecc
Confidence            0 0000000000                   000     0112223456678999999997 889999999999999998


Q ss_pred             Cceeee------ecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCC---eEEEEeCCCCeEEEEec------------
Q 008496          430 DKYVHD------LREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDS---TVKLWDVELGKLLYSLN------------  488 (563)
Q Consensus       430 ~~~~~~------~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg---~i~iwd~~~~~~~~~~~------------  488 (563)
                      ++++..      +.+|..+|.+++|+|++.         +|++|+.|+   .|++||+.+++++..+.            
T Consensus       215 ~~~~~~~~~~~~l~~h~~~V~~l~~spdg~---------~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~  285 (393)
T d1sq9a_         215 LRPLYNFESQHSMINNSNSIRSVKFSPQGS---------LLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGE  285 (393)
T ss_dssp             TEEEEEEECCC---CCCCCEEEEEECSSTT---------EEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CC
T ss_pred             cccccccccccccccccceEEEcccccccc---------eeeeecCCCCcceeeecccccceeeeeeccccccccceeee
Confidence            887654      346889999999999886         789999887   49999999998887764            


Q ss_pred             -CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEecC----------------------CCEEEEEEcCCC-
Q 008496          489 -GHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGN----------------------GGIFEVCWNKEG-  544 (563)
Q Consensus       489 -~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~~----------------------~~i~~l~w~~~g-  544 (563)
                       +|...|++++|+|||++|||||.|++|+|||+.+|+++.++.++                      +++.++.|.+++ 
T Consensus       286 ~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  365 (393)
T d1sq9a_         286 FAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGW  365 (393)
T ss_dssp             BSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTT
T ss_pred             ecccCceeeeccCCCCCeeEEECCCCEEEEEECCCCCEEEEECCcCCcccCCccEEEECCCCCEEEEcccceEEECccCc
Confidence             79999999999999999999999999999999999999998653                      246677776654 


Q ss_pred             ---------CEEEEEECCCeEEEEE
Q 008496          545 ---------DKIAACFANHTVCVLD  560 (563)
Q Consensus       545 ---------~~la~~~~~~~v~v~~  560 (563)
                               ..|+++..|+.+++|.
T Consensus       366 ~~~~~~~~~~~~~~~~~d~~ir~~~  390 (393)
T d1sq9a_         366 RSGMGADLNESLCCVCLDRSIRWFR  390 (393)
T ss_dssp             SBSTTCTTSCEEEEEETTTEEEEEE
T ss_pred             eeccccCCCCEEEEEEcCCeEEEEe
Confidence                     3477777888888874

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.1e-32  Score=265.55  Aligned_cols=257  Identities=18%  Similarity=0.274  Sum_probs=199.5

Q ss_pred             eeEecCC-CCceEEEEECC--CCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECC
Q 008496          208 VTILEGH-TSEVCACAWSP--AGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG  284 (563)
Q Consensus       208 ~~~l~~h-~~~V~~~~~sp--~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~  284 (563)
                      +..+.+| ...|++++|+|  ++.+||+|+.||+|+||++..+.....        .. .........+..+|.+++|++
T Consensus        55 ~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~--------~~-~~~~~~~~~~~~~v~~v~~s~  125 (325)
T d1pgua1          55 VVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNS--------VE-VNVKSEFQVLAGPISDISWDF  125 (325)
T ss_dssp             EEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTE--------EE-EEEEEEEECCSSCEEEEEECT
T ss_pred             eEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceee--------ee-cccccccccccCcEEEEEECC
Confidence            4566777 46899999998  468999999999999999865432110        00 111112234567899999999


Q ss_pred             CCCEEEEEeC--CCeEEEEEcC-CceeEeeccCCCCEEEEEeCCCCCE-EEEeeCCCcEEEEECCCCceeEEeeecccCe
Q 008496          285 EGTLLATGSY--DGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDY-LLTGSCDKTAIVWDVKTEEWKQQFEFHSGPT  360 (563)
Q Consensus       285 ~g~~l~sg~~--dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~-l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~  360 (563)
                      +|++|++++.  ++.+++|+.+ +.....+.+|...|.+++|+|++.+ +++++.|+.+++||+.+.+....+       
T Consensus       126 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~-------  198 (325)
T d1pgua1         126 EGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASD-------  198 (325)
T ss_dssp             TSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEE-------
T ss_pred             CCCccceeeccccceEEEEeecccccceeeeecccccccccccccccceEEEeecccccccccccccccceec-------
Confidence            9999988765  6789999875 5667788999999999999999875 678999999999998765433221       


Q ss_pred             EEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCC-CCEEEEEeCCCcEEEEeCCCCceeeeeccc
Q 008496          361 LDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT-GSLLASCSDDVTAKIWNMKQDKYVHDLREH  439 (563)
Q Consensus       361 ~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~-~~~las~s~dg~i~iwd~~~~~~~~~~~~~  439 (563)
                                                     ..+.+|...|.+++|+|+ +.+|++|+.|+.|++||+++++.+..+..|
T Consensus       199 -------------------------------~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~  247 (325)
T d1pgua1         199 -------------------------------RTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDD  247 (325)
T ss_dssp             -------------------------------CSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBT
T ss_pred             -------------------------------ccccCCCCccEEeeeccccceeccccccccceeeeeecccccccccccc
Confidence                                           223467888999999997 689999999999999999999999999988


Q ss_pred             CCCEEEEEEc---cCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCC--EEEEEEcCC-CCEEEEEeCCC
Q 008496          440 SKEIYTIRWS---PTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREP--VYSLAFSPT-GEYLASGSLDK  513 (563)
Q Consensus       440 ~~~i~~~~~~---p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~--i~~l~~spd-g~~lasgs~dg  513 (563)
                      ...+..+.|+   |++.         +|++++.|++|+|||+++++++..+..|...  +..++|.+. +.+|++||.||
T Consensus       248 ~~~v~~~~~s~~~~dg~---------~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg  318 (325)
T d1pgua1         248 QEPVQGGIFALSWLDSQ---------KFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDG  318 (325)
T ss_dssp             TBCCCSCEEEEEESSSS---------EEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTS
T ss_pred             ccccccceeeeeccCCC---------EEEEEeCCCeEEEEECCCCCEEEEEEecCCcccCeEEEEEECCCCEEEEEECCC
Confidence            8776555554   4443         7899999999999999999999887665543  344444433 34789999999


Q ss_pred             cEEEEec
Q 008496          514 SMHIWSL  520 (563)
Q Consensus       514 ~v~iw~~  520 (563)
                      .|+|||+
T Consensus       319 ~i~vwdl  325 (325)
T d1pgua1         319 TLNFYEL  325 (325)
T ss_dssp             CEEEEET
T ss_pred             EEEEEEC
Confidence            9999996

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.1e-32  Score=266.92  Aligned_cols=292  Identities=15%  Similarity=0.087  Sum_probs=214.5

Q ss_pred             eeEecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCC-C
Q 008496          208 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE-G  286 (563)
Q Consensus       208 ~~~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~-g  286 (563)
                      +.++.+|.+.|++++|+|++++||+|+.||+|+|||+..+...          ..+...    ..+..+|++++|+|+ +
T Consensus         4 v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~----------~~~~~~----~~h~~~V~~v~f~~~~~   69 (342)
T d1yfqa_           4 VQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKN----------VDLLQS----LRYKHPLLCCNFIDNTD   69 (342)
T ss_dssp             EECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTE----------EEEEEE----EECSSCEEEEEEEESSS
T ss_pred             EEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcc----------eEEEEe----cCCCCCEEEEEEeCCCC
Confidence            4567899999999999999999999999999999998754311          111111    124678999999986 5


Q ss_pred             CEEEEEeCCCeEEEEEcCCce-eEeec-cCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEe
Q 008496          287 TLLATGSYDGQARIWSTNGDL-KCTLS-KHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVD  364 (563)
Q Consensus       287 ~~l~sg~~dg~i~vw~~~~~~-~~~~~-~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~  364 (563)
                      .+|++|+.||.|++|+..... ..... .+........+.++...+++++.|+++++||+++.........         
T Consensus        70 ~~l~sg~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~---------  140 (342)
T d1yfqa_          70 LQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVK---------  140 (342)
T ss_dssp             EEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEE---------
T ss_pred             CEEEEcccccceeeeecccccccccccccccccccccccccccccccccccccccceeeccccccceeeec---------
Confidence            689999999999999976432 22333 3334445566777889999999999999999865432211110         


Q ss_pred             cCCCceEEEEeCCCeEEEEEcCCCcceeeecC--CCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceee---eeccc
Q 008496          365 WRNNVSFATSSTDNMIYVCKIGENRPIKTFAG--HQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVH---DLREH  439 (563)
Q Consensus       365 ~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~--h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~---~~~~~  439 (563)
                                                  ....  +........+.+.+..+++++.|+.|++|++.......   ....+
T Consensus       141 ----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~  192 (342)
T d1yfqa_         141 ----------------------------NLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGL  192 (342)
T ss_dssp             ----------------------------ESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSC
T ss_pred             ----------------------------ccccccccceeeeeeeeccCCceeeecCCCcEEEEecccCcccceeeeeccc
Confidence                                        0111  11233456667788899999999999999987665432   22334


Q ss_pred             CCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeE---------EEE------ecCCCCCEEEEEEcCCCC
Q 008496          440 SKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKL---------LYS------LNGHREPVYSLAFSPTGE  504 (563)
Q Consensus       440 ~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~---------~~~------~~~h~~~i~~l~~spdg~  504 (563)
                      ...+.+..+.|...        ..+++++.||.+.+|+......         ...      ..+|..+|++++|+|+++
T Consensus       193 ~~~~~~~~~~~~~~--------~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~  264 (342)
T d1yfqa_         193 KYQIRDVALLPKEQ--------EGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHK  264 (342)
T ss_dssp             SSCEEEEEECSGGG--------CEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTC
T ss_pred             ccceeeeEeecCCC--------CEEEeecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCcc
Confidence            45566666655432        3688999999999998764321         111      134667899999999999


Q ss_pred             EEEEEeCCCcEEEEecCCCeeEEEEecCCCEEEEEEcCCCCEEEEEECCCeEEE
Q 008496          505 YLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCV  558 (563)
Q Consensus       505 ~lasgs~dg~v~iw~~~~~~~~~~~~~~~~i~~l~w~~~g~~la~~~~~~~v~v  558 (563)
                      +||||+.||.|+|||+.+++.+.++.....+..++|+|+|+.||++++|+.+.+
T Consensus       265 ~lasg~~Dg~v~vWD~~~~~~l~~~~~~~~~~~~~~s~~~~~l~~a~sdd~~~~  318 (342)
T d1yfqa_         265 FLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLATSDDTFKT  318 (342)
T ss_dssp             CEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEEECSSEEEEEEECTHHHH
T ss_pred             EEEEECCCCEEEEEECCCCcEEEEecCCCCCEEEEEEeCCCEEEEEEcCCcEEE
Confidence            999999999999999999999998876666777889999999999988875443

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=9.6e-31  Score=256.91  Aligned_cols=273  Identities=27%  Similarity=0.429  Sum_probs=216.3

Q ss_pred             CCCC-eEEEEECCCCCEEEEEeCCCeEEEEEcC-CceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCcee
Q 008496          273 KSKD-VTTLDWNGEGTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWK  350 (563)
Q Consensus       273 ~~~~-V~~l~~s~~g~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~  350 (563)
                      |... |+|++|  +|++|+||+.||.|+|||.. ++...++.+|.++|++++|+|+ .+|++|+.|++|++|+.......
T Consensus        11 H~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~~~~~~~   87 (355)
T d1nexb2          11 HMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDIKKGCCT   87 (355)
T ss_dssp             CSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEETTTTEEE
T ss_pred             cCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCC-CEEEEEecccccccccccccccc
Confidence            3444 567665  57899999999999999975 6777889999999999999985 58999999999999999988766


Q ss_pred             EEeeecccCe--EEEec-CCCceEEEEeCCCeEEEEEcCCCcceee-----------------------ecCCCcceeEE
Q 008496          351 QQFEFHSGPT--LDVDW-RNNVSFATSSTDNMIYVCKIGENRPIKT-----------------------FAGHQGEVNCV  404 (563)
Q Consensus       351 ~~~~~~~~~~--~~~~~-~~~~~~~~~~~d~~i~~~~~~~~~~~~~-----------------------~~~h~~~i~~~  404 (563)
                      ..........  ....+ .+...+++++.|+.|++|++.....+..                       ...|...+  .
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~  165 (355)
T d1nexb2          88 HVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASV--R  165 (355)
T ss_dssp             EEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCE--E
T ss_pred             cccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeeccccc--c
Confidence            6554433332  22233 3445678899999999999876543221                       12233333  3


Q ss_pred             EECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEE
Q 008496          405 KWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLL  484 (563)
Q Consensus       405 ~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~  484 (563)
                      .+.++++++++++.|+.|++||+.+++.+..+..+...+.++.|+|.+.         ++++++.|+.|++||++++.++
T Consensus       166 ~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~d~~i~i~d~~~~~~~  236 (355)
T d1nexb2         166 TVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERK---------RCISASMDTTIRIWDLENGELM  236 (355)
T ss_dssp             EEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTT---------EEEEEETTSCEEEEETTTCCEE
T ss_pred             ccccccceeeeecccceeeeeecccccceeeeeccccccccccccccce---------eeecccccceEEeeeccccccc
Confidence            4556789999999999999999999999988888999999999999875         7889999999999999999999


Q ss_pred             EEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEecCCCEEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496          485 YSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLDFR  562 (563)
Q Consensus       485 ~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~~~~i~~l~w~~~g~~la~~~~~~~v~v~~~~  562 (563)
                      ..+.+|..+|.+++|++  ++|++|+.||.|++||+.++.....+.........+|+++++.|++| .|+.|+|||++
T Consensus       237 ~~~~~h~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g-~d~~i~vwd~~  311 (355)
T d1nexb2         237 YTLQGHTALVGLLRLSD--KFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSG-SENQFNIYNLR  311 (355)
T ss_dssp             EEECCCSSCCCEEEECS--SEEEEECTTSEEEEEETTTCCEEEEEECTTCCCCCEEEECSSEEEEE-ETTEEEEEETT
T ss_pred             ccccccccccccccccc--ceeeeeecccccccccccccceecccccCCceEEEEEcCCCCEEEEE-eCCEEEEEECC
Confidence            99999999999999975  69999999999999999988766555433333334567788887776 58899999985

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-30  Score=248.02  Aligned_cols=274  Identities=23%  Similarity=0.397  Sum_probs=216.3

Q ss_pred             ceeEecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCC
Q 008496          207 DVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG  286 (563)
Q Consensus       207 ~~~~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g  286 (563)
                      .+....+|...|+|++  +++++||||+.||+|+|||+.+++.             ++.+.    .|...|++++|  ++
T Consensus         7 ~i~~~~~~~~~V~c~~--~d~~~l~sgs~Dg~i~vWd~~~~~~-------------~~~l~----~H~~~V~~v~~--~~   65 (293)
T d1p22a2           7 RIHCRSETSKGVYCLQ--YDDQKIVSGLRDNTIKIWDKNTLEC-------------KRILT----GHTGSVLCLQY--DE   65 (293)
T ss_dssp             CEECCCSSCCCEEEEE--CCSSEEEEEESSSCEEEEESSSCCE-------------EEEEC----CCSSCEEEEEC--CS
T ss_pred             EEeccCCCCCCEEEEE--EcCCEEEEEeCCCeEEEEECCCCcE-------------EEEEe----cCCCCEeeeec--cc
Confidence            3455678889999875  4789999999999999999876542             12222    35678999987  57


Q ss_pred             CEEEEEeCCCeEEEEEcCCcee-EeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCcee---EEeeecccCeEE
Q 008496          287 TLLATGSYDGQARIWSTNGDLK-CTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWK---QQFEFHSGPTLD  362 (563)
Q Consensus       287 ~~l~sg~~dg~i~vw~~~~~~~-~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~---~~~~~~~~~~~~  362 (563)
                      ++|++|+.||.+++|+...... .....+....  ..+.+....++++..++.+.+||..+....   ..+..+...+..
T Consensus        66 ~~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  143 (293)
T d1p22a2          66 RVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAV--LHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNV  143 (293)
T ss_dssp             SEEEEEETTSCEEEEESSSCCEEEEECCCCSCE--EEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEE
T ss_pred             ceeeccccccccccccccccccccccccccccc--ccccccccceeecccccceeEeecccccccccccccccccccccc
Confidence            8999999999999999865433 3333333333  334556678999999999999998776533   234445556666


Q ss_pred             EecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccCCC
Q 008496          363 VDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKE  442 (563)
Q Consensus       363 ~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~  442 (563)
                      ..+... .+++++.|+.+++|+....+++..+.+|...+..+.++  +..+++++.|++|++||+++...+..+..|...
T Consensus       144 ~~~~~~-~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  220 (293)
T d1p22a2         144 VDFDDK-YIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEEL  220 (293)
T ss_dssp             EEEETT-EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSSC
T ss_pred             ceeccc-ccccccCCCceeeecCCCCcEEEEEcccccccccccCC--CCeEEEecCCCEEEEEecccceeeeeeccccee
Confidence            665544 56778899999999999999999999999999888775  568999999999999999999999988888888


Q ss_pred             EEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC---------CeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCC
Q 008496          443 IYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL---------GKLLYSLNGHREPVYSLAFSPTGEYLASGSLDK  513 (563)
Q Consensus       443 i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~---------~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg  513 (563)
                      +..+.+  ++.         +|++|+.||.|++||+..         ..++..+.+|..+|++++|+  +.+|+|||.||
T Consensus       221 v~~~~~--~~~---------~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d--~~~l~s~s~Dg  287 (293)
T d1p22a2         221 VRCIRF--DNK---------RIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD--EFQIVSSSHDD  287 (293)
T ss_dssp             EEEEEC--CSS---------EEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEEC--SSCEEECCSSS
T ss_pred             eeeccc--cce---------EEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEEc--CCEEEEEecCC
Confidence            876543  332         789999999999999642         35778899999999999994  67899999999


Q ss_pred             cEEEEe
Q 008496          514 SMHIWS  519 (563)
Q Consensus       514 ~v~iw~  519 (563)
                      +|+|||
T Consensus       288 ~i~iWD  293 (293)
T d1p22a2         288 TILIWD  293 (293)
T ss_dssp             EEEEEC
T ss_pred             EEEEeC
Confidence            999997

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.5e-30  Score=244.91  Aligned_cols=267  Identities=29%  Similarity=0.503  Sum_probs=221.4

Q ss_pred             cCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcC-CceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCcee
Q 008496          272 EKSKDVTTLDWNGEGTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWK  350 (563)
Q Consensus       272 ~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~  350 (563)
                      .+.+.|+|++|  +|++|+||+.||.|+|||.. ++...++.+|.++|++++|  ++++|++|+.|++|++|++..+...
T Consensus        13 ~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~~~   88 (293)
T d1p22a2          13 ETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEML   88 (293)
T ss_dssp             SSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEE
T ss_pred             CCCCCEEEEEE--cCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeec--ccceeeccccccccccccccccccc
Confidence            45678998765  78999999999999999976 6778899999999999987  5679999999999999999988776


Q ss_pred             EEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCc---ceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeC
Q 008496          351 QQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENR---PIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNM  427 (563)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~---~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~  427 (563)
                      ............ .......++++..++.+.+|+.....   ....+..|...+.++.+.  ...+++++.|+.|++||.
T Consensus        89 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~s~d~~i~~~d~  165 (293)
T d1p22a2          89 NTLIHHCEAVLH-LRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWNT  165 (293)
T ss_dssp             EEECCCCSCEEE-EECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEET
T ss_pred             cccccccccccc-ccccccceeecccccceeEeeccccccccccccccccccccccceec--ccccccccCCCceeeecC
Confidence            655544433333 23445567888999999999987654   344567788888888775  457889999999999999


Q ss_pred             CCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEE
Q 008496          428 KQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLA  507 (563)
Q Consensus       428 ~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~la  507 (563)
                      ++.+.+..+.++...+..+.+++.           .+++++.||+|++||+++.+.+....+|...|..  +++++.+|+
T Consensus       166 ~~~~~~~~~~~~~~~v~~~~~~~~-----------~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~--~~~~~~~l~  232 (293)
T d1p22a2         166 STCEFVRTLNGHKRGIACLQYRDR-----------LVVSGSSDNTIRLWDIECGACLRVLEGHEELVRC--IRFDNKRIV  232 (293)
T ss_dssp             TTCCEEEEEECCSSCEEEEEEETT-----------EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEE--EECCSSEEE
T ss_pred             CCCcEEEEEcccccccccccCCCC-----------eEEEecCCCEEEEEecccceeeeeecccceeeee--ccccceEEE
Confidence            999999999999999998888653           6899999999999999999999999999888865  567889999


Q ss_pred             EEeCCCcEEEEecCC---------CeeEEEEecC-CCEEEEEEcCCCCEEEEEECCCeEEEEE
Q 008496          508 SGSLDKSMHIWSLKE---------GKIVKTYTGN-GGIFEVCWNKEGDKIAACFANHTVCVLD  560 (563)
Q Consensus       508 sgs~dg~v~iw~~~~---------~~~~~~~~~~-~~i~~l~w~~~g~~la~~~~~~~v~v~~  560 (563)
                      +|+.||.|++||+..         ...++++.++ +.|++++|+  +++|++|+.|++|.|||
T Consensus       233 sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d--~~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         233 SGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD--EFQIVSSSHDDTILIWD  293 (293)
T ss_dssp             EEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEEC--SSCEEECCSSSEEEEEC
T ss_pred             EEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEEc--CCEEEEEecCCEEEEeC
Confidence            999999999999743         2356777654 568899995  67899999999999997

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.98  E-value=2.2e-30  Score=249.57  Aligned_cols=244  Identities=16%  Similarity=0.173  Sum_probs=202.4

Q ss_pred             CceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEee-ecccCeEEEecCCCceEEEEeCCCeEEEE
Q 008496          305 GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFE-FHSGPTLDVDWRNNVSFATSSTDNMIYVC  383 (563)
Q Consensus       305 ~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~i~~~  383 (563)
                      |.+..++.+|.++|++|+|+|++++|+||+.||+|++||+.+++....+. .|..++.++.|.++..+++++.|+.+++|
T Consensus         2 g~~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~~~~~~d~~v~~~   81 (299)
T d1nr0a2           2 GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVV   81 (299)
T ss_dssp             TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEE
T ss_pred             CccceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccceeecccceeeEEEe
Confidence            45678899999999999999999999999999999999999998887764 57888999999888888899999999999


Q ss_pred             EcCCCcc---eeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCC
Q 008496          384 KIGENRP---IKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQ  460 (563)
Q Consensus       384 ~~~~~~~---~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~  460 (563)
                      +......   ......+...+.+++|+|+++++++++. +.+++|+....  ....  ....+.+++|+|++.       
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~-~~i~~~~~~~~--~~~~--~~~~~~~~~~s~~~~-------  149 (299)
T d1nr0a2          82 PAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACY-KHIAIYSHGKL--TEVP--ISYNSSCVALSNDKQ-------  149 (299)
T ss_dssp             CSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEES-SEEEEEETTEE--EEEE--CSSCEEEEEECTTSC-------
T ss_pred             ccCCcccccccccccccccccccccccccccccccccc-ccccccccccc--cccc--ccccccccccccccc-------
Confidence            9865421   2223456778899999999998876654 68999985432  2222  334578899999875       


Q ss_pred             cEEEEEEeCCCeEEEEeCCCCeEEE-EecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEE---ec-CCCE
Q 008496          461 QLILASASFDSTVKLWDVELGKLLY-SLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTY---TG-NGGI  535 (563)
Q Consensus       461 ~~~l~s~s~dg~i~iwd~~~~~~~~-~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~---~~-~~~i  535 (563)
                        +|++|+.||.|++||+++++... ....|..+|++++|+|++++|++|+.|+.|++||+.++..+...   .. ...|
T Consensus       150 --~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v  227 (299)
T d1nr0a2         150 --FVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKV  227 (299)
T ss_dssp             --EEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCE
T ss_pred             --cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence              78999999999999998877643 34568899999999999999999999999999999887654332   22 4579


Q ss_pred             EEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496          536 FEVCWNKEGDKIAACFANHTVCVLDFR  562 (563)
Q Consensus       536 ~~l~w~~~g~~la~~~~~~~v~v~~~~  562 (563)
                      .+++|+|+|++||+|+.|+.|.|||++
T Consensus       228 ~~l~~s~~~~~l~sgs~dg~i~iwd~~  254 (299)
T d1nr0a2         228 ACVSWSPDNVRLATGSLDNSVIVWNMN  254 (299)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred             ccccccccccceEEEcCCCEEEEEECC
Confidence            999999999999999999999999975

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=6.9e-30  Score=244.56  Aligned_cols=261  Identities=20%  Similarity=0.278  Sum_probs=209.7

Q ss_pred             cCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeE
Q 008496          272 EKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQ  351 (563)
Q Consensus       272 ~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~  351 (563)
                      +|..+|++++|+|    |+||+.||.|++|+...    ....|...|.++.|++++ .+++++.|+++++|++...+.  
T Consensus        11 gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~----~~~~h~~~V~~~~~~~~~-~~~s~s~D~~v~~w~~~~~~~--   79 (287)
T d1pgua2          11 GHNKGITALTVNP----LISGSYDGRIMEWSSSS----MHQDHSNLIVSLDNSKAQ-EYSSISWDDTLKVNGITKHEF--   79 (287)
T ss_dssp             CCSSCEEEEETTT----TEEEETTSCEEETTTTE----EECCCCSCEEEEECCSTT-CCEEEETTTEEEETTEEEEEC--
T ss_pred             CCCCceEEEEECc----EEEEeCCCeEEEEECCC----CCCCCCCCEEEEEecCCC-eEEEEeecccccccccccccc--
Confidence            4678899999997    89999999999998754    346899999999998764 689999999999998754321  


Q ss_pred             EeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCC-cEEEEeCCCC
Q 008496          352 QFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDV-TAKIWNMKQD  430 (563)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg-~i~iwd~~~~  430 (563)
                           ...+..+.+.++..++....++.+.+|+......+..+..+ ..  +.++++++..+++++.|+ .+++|++...
T Consensus        80 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~v~~~~~~~v~~~~~~~~  151 (287)
T d1pgua2          80 -----GSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLN-SP--GSAVSLSQNYVAVGLEEGNTIQVFKLSDL  151 (287)
T ss_dssp             -----SSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECS-SC--EEEEEECSSEEEEEETTTSCEEEEETTEE
T ss_pred             -----ccceeeeeeccCCceEEEeecccceeeeccceeeeeecccc-ce--eeeeeccCcceeeeccccceeeeeecccc
Confidence                 22344556666777777778888999999888877776543 23  345667788888777765 7999998876


Q ss_pred             ceeeeec-ccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEE-ecCCCCCEEEEEEcCCC-----
Q 008496          431 KYVHDLR-EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYS-LNGHREPVYSLAFSPTG-----  503 (563)
Q Consensus       431 ~~~~~~~-~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~-~~~h~~~i~~l~~spdg-----  503 (563)
                      .....+. .|...+++++|+|++.         +|++|+.||.|++||+.+++.+.. +.+|..+|.+++|+|++     
T Consensus       152 ~~~~~~~~~~~~~v~~~~~s~~~~---------~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~  222 (287)
T d1pgua2         152 EVSFDLKTPLRAKPSYISISPSET---------YIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANE  222 (287)
T ss_dssp             EEEEECSSCCSSCEEEEEECTTSS---------EEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC-----
T ss_pred             ceeeeeeeccCCceeEEEeccCcc---------ccccccccccccceeecccccccccccccccccceeeeccccccccc
Confidence            6555544 4778899999999885         799999999999999999887654 67899999999998754     


Q ss_pred             -----CEEEEEeCCCcEEEEecCC-CeeEEEEec-CCCEEEEEEcCCCCEEEEEECCCeEEEEEe
Q 008496          504 -----EYLASGSLDKSMHIWSLKE-GKIVKTYTG-NGGIFEVCWNKEGDKIAACFANHTVCVLDF  561 (563)
Q Consensus       504 -----~~lasgs~dg~v~iw~~~~-~~~~~~~~~-~~~i~~l~w~~~g~~la~~~~~~~v~v~~~  561 (563)
                           .+||+|+.|++|+||++++ ++++..+.+ ...|.+++|+|++ .|++++.|+.|.|||+
T Consensus       223 ~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         223 EEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGADACIKRWNV  286 (287)
T ss_dssp             -CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETT-EEEEEETTSCEEEEEE
T ss_pred             ccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCC-EEEEEECCCeEEEEEE
Confidence                 6899999999999999976 556666554 4579999999987 5788889999999996

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.5e-28  Score=238.18  Aligned_cols=269  Identities=24%  Similarity=0.445  Sum_probs=218.8

Q ss_pred             CCCCeEEEEECCCCCEEEEEeCCCeEEEEEcC-CceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeE
Q 008496          273 KSKDVTTLDWNGEGTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQ  351 (563)
Q Consensus       273 ~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~  351 (563)
                      |...|.+ +++++|++|+||+.||.|+|||.. ++...++.+|.++|++++|+|+  +|++|+.|+++++|+........
T Consensus        15 H~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~~~~~~~~~~~~~~~   91 (342)
T d2ovrb2          15 HDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN--IIISGSTDRTLKVWNAETGECIH   91 (342)
T ss_dssp             STTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETT--EEEEEETTSCEEEEETTTTEEEE
T ss_pred             cCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCCC--ccccceeccccccccccccccee
Confidence            4566654 355678999999999999999975 6778889999999999999874  99999999999999998876655


Q ss_pred             EeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCc
Q 008496          352 QFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDK  431 (563)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~  431 (563)
                      ........+..... ....+..+..|+.+.+|+....+....+..+.....  .+.+....+++++.|+.|++||.....
T Consensus        92 ~~~~~~~~~~~~~~-~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~d~~i~~~d~~~~~  168 (342)
T d2ovrb2          92 TLYGHTSTVRCMHL-HEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVR--CVQYDGRRVVSGAYDFMVKVWDPETET  168 (342)
T ss_dssp             EECCCSSCEEEEEE-ETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEE--EEEECSSCEEEEETTSCEEEEEGGGTE
T ss_pred             cccccceeEeeeec-ccccccccccceeEEEeecccccceeeeecccccce--eeccccceeeeecCCCeEEEeecccce
Confidence            55444444443333 344567788899999999988877776665544443  334466788999999999999999999


Q ss_pred             eeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeC
Q 008496          432 YVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSL  511 (563)
Q Consensus       432 ~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~  511 (563)
                      .+..+..|...+..+.+.+  .         .+++|+.||.|++||++.++++..+.+|...|.++++++  ++|++|+.
T Consensus       169 ~~~~~~~~~~~~~~~~~~~--~---------~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~s~  235 (342)
T d2ovrb2         169 CLHTLQGHTNRVYSLQFDG--I---------HVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD--NILVSGNA  235 (342)
T ss_dssp             EEEEECCCSSCEEEEEECS--S---------EEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEET--TEEEEEET
T ss_pred             eeEEEcCcccccccccCCC--C---------EEEEEeCCCeEEEeecccceeeeEecccccceeEEecCC--CEEEEEcC
Confidence            9999999988887776643  2         689999999999999999999999999999999888865  59999999


Q ss_pred             CCcEEEEecCCCeeEEEEecC----CCEEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496          512 DKSMHIWSLKEGKIVKTYTGN----GGIFEVCWNKEGDKIAACFANHTVCVLDFR  562 (563)
Q Consensus       512 dg~v~iw~~~~~~~~~~~~~~----~~i~~l~w~~~g~~la~~~~~~~v~v~~~~  562 (563)
                      ||.|++||+...+....+...    ..+..++|+  ++++++|+.||.|.|||++
T Consensus       236 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~s~Dg~i~iwd~~  288 (342)
T d2ovrb2         236 DSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLK  288 (342)
T ss_dssp             TSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETT
T ss_pred             CCEEEEEecccccccccccccceeeeceeecccC--CCeeEEEcCCCEEEEEECC
Confidence            999999999998888777542    345666665  5799999999999999975

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.97  E-value=6.4e-30  Score=252.38  Aligned_cols=311  Identities=11%  Similarity=0.092  Sum_probs=228.5

Q ss_pred             eEEEEECC-CCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEEeCCC
Q 008496          218 VCACAWSP-AGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDG  296 (563)
Q Consensus       218 V~~~~~sp-~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~dg  296 (563)
                      +++-.||| ||+++|+++ +|.|++|++..+...              +.     .+...|++++|+|||++|++++.+.
T Consensus         5 ~~~~~fSP~dG~~~a~~~-~g~v~v~d~~~~~~~--------------~~-----~~~~~v~~~~~spDg~~l~~~~~~~   64 (360)
T d1k32a3           5 KFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVL--------------KV-----PEPLRIRYVRRGGDTKVAFIHGTRE   64 (360)
T ss_dssp             GGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEE--------------EC-----SCCSCEEEEEECSSSEEEEEEEETT
T ss_pred             hhcccccCCCCCEEEEEE-CCeEEEEECCCCcEE--------------Ec-----cCCCCEEEEEECCCCCEEEEEEcCC
Confidence            34578999 899999986 579999998654321              11     2456799999999999998877654


Q ss_pred             --eEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecCCCce-EEE
Q 008496          297 --QARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVS-FAT  373 (563)
Q Consensus       297 --~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  373 (563)
                        .|++|+..+.....+..|...|.+++|+|+|++|++++.++.+++|++.++.....+..+...+.++.|..+.. ++.
T Consensus        65 g~~v~v~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~  144 (360)
T d1k32a3          65 GDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAY  144 (360)
T ss_dssp             EEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEE
T ss_pred             CCEEEEEECCCCcEEEeeCCCceEEeeeecccccccceeccccccccccccccceeeeeecccccccchhhccceeeeee
Confidence              79999999888888899999999999999999999999999999999999998888888888888888876644 332


Q ss_pred             E----------eCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCcee-------eee
Q 008496          374 S----------STDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYV-------HDL  436 (563)
Q Consensus       374 ~----------~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~-------~~~  436 (563)
                      +          ..++.+++|++...+... +..|...+.+++|+|+|+.|++++.|+.+++|+.......       ..+
T Consensus       145 ~~~~~~~~~~~~~~~~~~v~d~~~~~~~~-~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~  223 (360)
T d1k32a3         145 GFPLKHGETDGYVMQAIHVYDMEGRKIFA-ATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVI  223 (360)
T ss_dssp             EEEECSSTTCSCCEEEEEEEETTTTEEEE-CSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEE
T ss_pred             eccccccceeeccccceeeeccccCceee-ecccccccccccccCCCCEEEEEeCCCceEcccccccceeeccccceEEE
Confidence            2          234568899998766544 4456778889999999999999999999999997654332       111


Q ss_pred             cccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCC-----eEEEEeCCCCeEEEEecCCCCCEEEEEEcCCC---CEEEE
Q 008496          437 REHSKEIYTIRWSPTGSGTNNPNQQLILASASFDS-----TVKLWDVELGKLLYSLNGHREPVYSLAFSPTG---EYLAS  508 (563)
Q Consensus       437 ~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg-----~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg---~~las  508 (563)
                      ..|......+.|+|++..         ++++..+.     .+..+++..+.. ..+..+...+..+.+.+.+   .++++
T Consensus       224 ~~~~~~~~~~~~s~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (360)
T d1k32a3         224 PLIPGSPNPTKLVPRSMT---------SEAGEYDLNDMYKRSSPINVDPGDY-RMIIPLESSILIYSVPVHGEFAAYYQG  293 (360)
T ss_dssp             ESSTTCCCGGGCCCGGGS---------CCCCCCCCTTGGGGCEECSCCCBCE-EEEEECSSEEEEEECCCCCSHHHHHHC
T ss_pred             ecccCccccceECCCcCc---------ccccceeecccccceeecccCcCce-eEeeecCCCceEEEEEecCCCeeEEEe
Confidence            122222222333343321         22222221     233344444433 2333455556666655544   57889


Q ss_pred             EeCCCcEEEEecCCCeeEEEEecCCCEEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496          509 GSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLDFR  562 (563)
Q Consensus       509 gs~dg~v~iw~~~~~~~~~~~~~~~~i~~l~w~~~g~~la~~~~~~~v~v~~~~  562 (563)
                      ++.++.|++||+.++++... .  +.|.+++|+|||++|++++.||.|.|||+.
T Consensus       294 ~~~~~~i~~~d~~~~~~~~~-~--~~v~~~~~SpDG~~l~~~~~Dg~i~v~d~~  344 (360)
T d1k32a3         294 APEKGVLLKYDVKTRKVTEV-K--NNLTDLRLSADRKTVMVRKDDGKIYTFPLE  344 (360)
T ss_dssp             CCCCEEEEEEETTTCCEEEE-E--EEEEEEEECTTSCEEEEEETTSCEEEEESS
T ss_pred             cCCCCEEEEEECCCCeEEEe-c--CCcCEEEECCCCCEEEEEECCCeEEEEECC
Confidence            99999999999998875432 2  358899999999999999999999999975

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=2.1e-27  Score=238.25  Aligned_cols=241  Identities=18%  Similarity=0.252  Sum_probs=180.7

Q ss_pred             eeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCce------eEEeeecccCeEE------EecCC--CceEEEEe
Q 008496          310 TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEW------KQQFEFHSGPTLD------VDWRN--NVSFATSS  375 (563)
Q Consensus       310 ~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~------~~~~~~~~~~~~~------~~~~~--~~~~~~~~  375 (563)
                      ...+|.+.|+++++++  ++++|||.|++|+|||..+...      ......+...+..      +....  ...+++++
T Consensus         9 ~~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~   86 (393)
T d1sq9a_           9 AGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTS   86 (393)
T ss_dssp             ESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEE
T ss_pred             cCCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEEe
Confidence            4578999999999865  6999999999999999765432      1111122221111      11111  23467888


Q ss_pred             CCCeEEEEEcCCCcceeee----------cCCCcceeEEEECCC-----CCEEEEEeCCCcEEEEeCCCCc---------
Q 008496          376 TDNMIYVCKIGENRPIKTF----------AGHQGEVNCVKWDPT-----GSLLASCSDDVTAKIWNMKQDK---------  431 (563)
Q Consensus       376 ~d~~i~~~~~~~~~~~~~~----------~~h~~~i~~~~~~~~-----~~~las~s~dg~i~iwd~~~~~---------  431 (563)
                      .|+.|.+|++........+          ..+...+..++|.++     +.++++++.||++++|++....         
T Consensus        87 ~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~  166 (393)
T d1sq9a_          87 FSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLN  166 (393)
T ss_dssp             TTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTC
T ss_pred             CCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeee
Confidence            9999999987543322111          123456777888765     4678999999999999974221         


Q ss_pred             ---------eeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEe------cCCCCCEEE
Q 008496          432 ---------YVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSL------NGHREPVYS  496 (563)
Q Consensus       432 ---------~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~------~~h~~~i~~  496 (563)
                               .......+...+++++|+|++          +|++|+.||+|+|||+.+++++..+      .+|..+|++
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg----------~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~  236 (393)
T d1sq9a_         167 WSPTLELQGTVESPMTPSQFATSVDISERG----------LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRS  236 (393)
T ss_dssp             CCCEEEEEEEECCSSSSCCCCCEEEECTTS----------EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEE
T ss_pred             eccceecccceecccCCCCcEEEEEECCCC----------EEEEEeCCCcEEEEeecccccccccccccccccccceEEE
Confidence                     111222345668899999875          6899999999999999999887654      568999999


Q ss_pred             EEEcCCCCEEEEEeCCCc---EEEEecCCCeeEEEEe--------------cCCCEEEEEEcCCCCEEEEEECCCeEEEE
Q 008496          497 LAFSPTGEYLASGSLDKS---MHIWSLKEGKIVKTYT--------------GNGGIFEVCWNKEGDKIAACFANHTVCVL  559 (563)
Q Consensus       497 l~~spdg~~lasgs~dg~---v~iw~~~~~~~~~~~~--------------~~~~i~~l~w~~~g~~la~~~~~~~v~v~  559 (563)
                      ++|||||++|++|+.|++   |++||+.+++.+.++.              +.+.|++++|+|+|++||+|+.|++|+||
T Consensus       237 l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vW  316 (393)
T d1sq9a_         237 VKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFW  316 (393)
T ss_dssp             EEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEE
T ss_pred             cccccccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEE
Confidence            999999999999999874   9999999999888874              23569999999999999999999999999


Q ss_pred             Eee
Q 008496          560 DFR  562 (563)
Q Consensus       560 ~~~  562 (563)
                      |++
T Consensus       317 d~~  319 (393)
T d1sq9a_         317 DVK  319 (393)
T ss_dssp             ETT
T ss_pred             ECC
Confidence            975

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.95  E-value=6.2e-26  Score=229.96  Aligned_cols=311  Identities=12%  Similarity=0.064  Sum_probs=215.1

Q ss_pred             CEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCc-
Q 008496          228 SLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGD-  306 (563)
Q Consensus       228 ~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~-  306 (563)
                      -++++++.||+|+|||+.+++..             ..+..     ...+..++|||||++|++++.||.+++||.... 
T Consensus        33 ~~~V~~~~dg~v~vwD~~t~~~~-------------~~l~~-----g~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~   94 (426)
T d1hzua2          33 LFSVTLRDAGQIALVDGDSKKIV-------------KVIDT-----GYAVHISRMSASGRYLLVIGRDARIDMIDLWAKE   94 (426)
T ss_dssp             EEEEEETTTTEEEEEETTTCSEE-------------EEEEC-----CSSEEEEEECTTSCEEEEEETTSEEEEEETTSSS
T ss_pred             EEEEEEcCCCEEEEEECCCCcEE-------------EEEeC-----CCCeeEEEECCCCCEEEEEeCCCCEEEEEccCCc
Confidence            35688889999999999876531             22221     235899999999999999999999999998643 


Q ss_pred             ee--E---eeccCCCCEEEEEeCCCCCEEEE-eeCCCcEEEEECCCCceeEEeeecccCeEEEec--CCCceEEEEeCCC
Q 008496          307 LK--C---TLSKHKGPIFSLKWNKKGDYLLT-GSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDW--RNNVSFATSSTDN  378 (563)
Q Consensus       307 ~~--~---~~~~h~~~V~~l~~~~~~~~l~s-~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~d~  378 (563)
                      ..  .   ...+|.+.+.++.|+|+|+++++ +..++++++||..++.....+..+...+....+  ......+..+.|+
T Consensus        95 ~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~  174 (426)
T d1hzua2          95 PTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEH  174 (426)
T ss_dssp             CEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSS
T ss_pred             eeEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCC
Confidence            21  1   22457777888899999998754 557899999999999888777655543322222  2222333344444


Q ss_pred             e-----------EEEEEcCCCcc-eeeecCCCcceeEEEECCCCCEEEEEe-CCCcEEEEeCCCCceeeeeccc--CCCE
Q 008496          379 M-----------IYVCKIGENRP-IKTFAGHQGEVNCVKWDPTGSLLASCS-DDVTAKIWNMKQDKYVHDLREH--SKEI  443 (563)
Q Consensus       379 ~-----------i~~~~~~~~~~-~~~~~~h~~~i~~~~~~~~~~~las~s-~dg~i~iwd~~~~~~~~~~~~~--~~~i  443 (563)
                      .           +.++....... .....++...+..+.|+|++++++++. .+..+.+|+..+++.+..+...  ....
T Consensus       175 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (426)
T d1hzua2         175 PEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPG  254 (426)
T ss_dssp             SEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCS
T ss_pred             CEEEEecCCCCeEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCccccc
Confidence            3           33333332221 222335666788999999999876665 5667899999988876654322  1112


Q ss_pred             EEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC-------CeEEEEecCCCCCEEEEEEcCCCCEEEE-------E
Q 008496          444 YTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL-------GKLLYSLNGHREPVYSLAFSPTGEYLAS-------G  509 (563)
Q Consensus       444 ~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~-------~~~~~~~~~h~~~i~~l~~spdg~~las-------g  509 (563)
                      ....+.+.+.      .....++.+.|+.+.+|+...       ++....+.+|...+..++|||||++|++       +
T Consensus       255 ~~~~~~~~~~------~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~  328 (426)
T d1hzua2         255 RGANFVHPKY------GPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDA  328 (426)
T ss_dssp             CCEEEEETTT------EEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSH
T ss_pred             ceeeeecCCC------CceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCc
Confidence            2233322221      112344556688898888653       4788899999999999999999999994       5


Q ss_pred             eCCCcEEEEecCCCeeEEEEe----------cCCCEEEEEEcCCCCEEEEE-E----CCCeEEEEEee
Q 008496          510 SLDKSMHIWSLKEGKIVKTYT----------GNGGIFEVCWNKEGDKIAAC-F----ANHTVCVLDFR  562 (563)
Q Consensus       510 s~dg~v~iw~~~~~~~~~~~~----------~~~~i~~l~w~~~g~~la~~-~----~~~~v~v~~~~  562 (563)
                      +.|++|+|||+.+++.+.+..          +...+.+++|||||++|.++ +    .++.|.|||.+
T Consensus       329 ~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~  396 (426)
T d1hzua2         329 RISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDK  396 (426)
T ss_dssp             HHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEETT
T ss_pred             ccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECCCCCEEEEEEecCCCCCCeEEEEECC
Confidence            668899999999998765542          23458999999999977543 2    46789999864

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.94  E-value=3.5e-26  Score=225.31  Aligned_cols=288  Identities=9%  Similarity=0.016  Sum_probs=210.1

Q ss_pred             CCCCceEEEEECCCCCEEEEeeCCC--cEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEE
Q 008496          213 GHTSEVCACAWSPAGSLLASGSGDS--TARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLA  290 (563)
Q Consensus       213 ~h~~~V~~~~~sp~~~~latgs~D~--~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~  290 (563)
                      +|...|.+++|+|||++|++++.|.  .+++|++.++...              .    ...+...|.+++|+|+|++|+
T Consensus        40 ~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~--------------~----~~~~~~~v~~~~~spdg~~l~  101 (360)
T d1k32a3          40 PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAE--------------K----FEENLGNVFAMGVDRNGKFAV  101 (360)
T ss_dssp             SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEE--------------E----CCCCCCSEEEEEECTTSSEEE
T ss_pred             cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEE--------------E----eeCCCceEEeeeecccccccc
Confidence            7999999999999999998877654  7999998765321              1    123467799999999999999


Q ss_pred             EEeCCCeEEEEEcCC-ceeEeeccCCCCEEEEEeCCCCCEEEEee----------CCCcEEEEECCCCceeEEeeecccC
Q 008496          291 TGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGS----------CDKTAIVWDVKTEEWKQQFEFHSGP  359 (563)
Q Consensus       291 sg~~dg~i~vw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s----------~D~~v~iwd~~~~~~~~~~~~~~~~  359 (563)
                      +++.++.+++|+..+ .....+..|...+.+++|+|+|++|+.++          .++.+++||+.+++..... .+...
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~-~~~~~  180 (360)
T d1k32a3         102 VANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAAT-TENSH  180 (360)
T ss_dssp             EEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECS-CSSSB
T ss_pred             eeccccccccccccccceeeeeecccccccchhhccceeeeeeeccccccceeeccccceeeeccccCceeeec-ccccc
Confidence            999999999999865 45567778999999999999999998643          3456899999887655433 34445


Q ss_pred             eEEEecCCC-ceEEEEeCCCeEEEEEcCCCc-------ceeeecCCCcceeEEEECCCCCEEEEEeCCCc---EEEEeC-
Q 008496          360 TLDVDWRNN-VSFATSSTDNMIYVCKIGENR-------PIKTFAGHQGEVNCVKWDPTGSLLASCSDDVT---AKIWNM-  427 (563)
Q Consensus       360 ~~~~~~~~~-~~~~~~~~d~~i~~~~~~~~~-------~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~---i~iwd~-  427 (563)
                      ...+.|..+ ..++.++.++.+.+|+.....       ....+..|...+..+.|++++..++++..+..   .++|.+ 
T Consensus       181 ~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~  260 (360)
T d1k32a3         181 DYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPIN  260 (360)
T ss_dssp             EEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECS
T ss_pred             cccccccCCCCEEEEEeCCCceEcccccccceeeccccceEEEecccCccccceECCCcCcccccceeecccccceeecc
Confidence            556666554 567888899999998865432       12233445566666778888877766654432   234433 


Q ss_pred             -CCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEE
Q 008496          428 -KQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYL  506 (563)
Q Consensus       428 -~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l  506 (563)
                       ..+. ...+..+...+..+.+.+.+.      ...++++++.++.|++||+.+++.. .   |...|.+++|||||++|
T Consensus       261 ~~~~~-~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~i~~~d~~~~~~~-~---~~~~v~~~~~SpDG~~l  329 (360)
T d1k32a3         261 VDPGD-YRMIIPLESSILIYSVPVHGE------FAAYYQGAPEKGVLLKYDVKTRKVT-E---VKNNLTDLRLSADRKTV  329 (360)
T ss_dssp             CCCBC-EEEEEECSSEEEEEECCCCCS------HHHHHHCCCCCEEEEEEETTTCCEE-E---EEEEEEEEEECTTSCEE
T ss_pred             cCcCc-eeEeeecCCCceEEEEEecCC------CeeEEEecCCCCEEEEEECCCCeEE-E---ecCCcCEEEECCCCCEE
Confidence             3332 233445555566666655432      1125678889999999999987653 2   34569999999999999


Q ss_pred             EEEeCCCcEEEEecCCCeeEEEEe
Q 008496          507 ASGSLDKSMHIWSLKEGKIVKTYT  530 (563)
Q Consensus       507 asgs~dg~v~iw~~~~~~~~~~~~  530 (563)
                      ++++.||.|++||+.+++...++.
T Consensus       330 ~~~~~Dg~i~v~d~~~~~~~~~~~  353 (360)
T d1k32a3         330 MVRKDDGKIYTFPLEKPEDERTVE  353 (360)
T ss_dssp             EEEETTSCEEEEESSCTTSCEECC
T ss_pred             EEEECCCeEEEEECCCCCcceEEE
Confidence            999999999999999887666553

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.92  E-value=4.8e-24  Score=215.78  Aligned_cols=305  Identities=12%  Similarity=0.034  Sum_probs=196.8

Q ss_pred             CEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCC-c
Q 008496          228 SLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNG-D  306 (563)
Q Consensus       228 ~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~-~  306 (563)
                      -++++.+.||+|.|||..+++.             +..+..     ...+..++|||||+++++++.||.+++||... .
T Consensus        33 ~~~v~~~d~g~v~v~D~~t~~v-------------~~~~~~-----g~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~   94 (432)
T d1qksa2          33 LFSVTLRDAGQIALIDGSTYEI-------------KTVLDT-----GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKE   94 (432)
T ss_dssp             EEEEEETTTTEEEEEETTTCCE-------------EEEEEC-----SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSS
T ss_pred             EEEEEEcCCCEEEEEECCCCcE-------------EEEEeC-----CCCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCC
Confidence            3468899999999999887653             222221     23589999999999999999999999999753 2


Q ss_pred             --eeEe---eccCCCCEEEEEeCCCCCEE-EEeeCCCcEEEEECCCCceeEEeeecccC-----------eEEEecCC--
Q 008496          307 --LKCT---LSKHKGPIFSLKWNKKGDYL-LTGSCDKTAIVWDVKTEEWKQQFEFHSGP-----------TLDVDWRN--  367 (563)
Q Consensus       307 --~~~~---~~~h~~~V~~l~~~~~~~~l-~s~s~D~~v~iwd~~~~~~~~~~~~~~~~-----------~~~~~~~~--  367 (563)
                        ....   ...|.+.+.+..|+|||++| ++++.++++++||..+++.+..+..+...           ...+....  
T Consensus        95 ~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg  174 (432)
T d1qksa2          95 PTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYR  174 (432)
T ss_dssp             CCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSS
T ss_pred             ceEEEEEecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCC
Confidence              2222   34567778888899999986 67888999999999999988876654321           22222222  


Q ss_pred             CceEEEEeCCCeEEEEEcCCCcceeeec-CCCcceeEEEECCCCCEEEEEeC-CCcEEEEeCCCCceeeeecc-----cC
Q 008496          368 NVSFATSSTDNMIYVCKIGENRPIKTFA-GHQGEVNCVKWDPTGSLLASCSD-DVTAKIWNMKQDKYVHDLRE-----HS  440 (563)
Q Consensus       368 ~~~~~~~~~d~~i~~~~~~~~~~~~~~~-~h~~~i~~~~~~~~~~~las~s~-dg~i~iwd~~~~~~~~~~~~-----~~  440 (563)
                      ...+++...++.|.+++....+...... .+...+..++|+|+|+++++++. ++.+.++|..+.+.+..+..     |.
T Consensus       175 ~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~  254 (432)
T d1qksa2         175 PEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHP  254 (432)
T ss_dssp             SEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCC
T ss_pred             CEEEEEEccCCeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccceEEEEeccCcccccc
Confidence            2334566778889999987765443322 34456789999999998766665 56788999988776654321     22


Q ss_pred             CCEEEEEEccCCCCCCCCCCcEEEEEE-eCCCeEEEEeCCCCe-------EEEEec------------------------
Q 008496          441 KEIYTIRWSPTGSGTNNPNQQLILASA-SFDSTVKLWDVELGK-------LLYSLN------------------------  488 (563)
Q Consensus       441 ~~i~~~~~~p~~~~~~~~~~~~~l~s~-s~dg~i~iwd~~~~~-------~~~~~~------------------------  488 (563)
                      .......+...+         .+.++. ..|+.|.+|+.....       ....+.                        
T Consensus       255 ~~~~~~~~~~~g---------~~~~~~~lg~~~v~~~~~~~~~~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~  325 (432)
T d1qksa2         255 GRGANFVHPTFG---------PVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATL  325 (432)
T ss_dssp             TTCEEEEETTTE---------EEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTT
T ss_pred             CcccceecCCCC---------ceecccccCCceEEecccccccccccccEEEEEEEcCCCCeEEEEecCCccceeecccC
Confidence            223333332221         122222 236667777654321       111111                        


Q ss_pred             -CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEecCCCEEEEEEcCCCCEEEEEE-----CCCeEEEEEee
Q 008496          489 -GHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACF-----ANHTVCVLDFR  562 (563)
Q Consensus       489 -~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~~~~i~~l~w~~~g~~la~~~-----~~~~v~v~~~~  562 (563)
                       .|.....++++ ||++.|++++.|+.+++|++.++..+.  .+...+..++|||||++|+++.     .++.|.|||-+
T Consensus       326 ~~~~~~~~sv~v-pDg~~la~~s~d~~~k~w~~~~~~~l~--~~~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D~~  402 (432)
T d1qksa2         326 NPEAEISGSVAV-FDIKAMTGDGSDPEFKTLPIAEWAGIT--EGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDK  402 (432)
T ss_dssp             CSSHHHHTCEEE-EEGGGCCCSSSCCCEEEECHHHHHTCC--SSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETT
T ss_pred             CCCCCeeeEEEE-EechhhcccccCCceEecccccccccC--CCCCcEEEeEECCCCCEEEEEEecCCCCCCcEEEEECC
Confidence             11111122333 677777777777777777765432221  2445688999999999887664     35789999854

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=1e-23  Score=204.70  Aligned_cols=247  Identities=11%  Similarity=0.064  Sum_probs=181.5

Q ss_pred             eeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeE---EeeecccCeEEEecCC--CceEEEEeCCCeEE
Q 008496          307 LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQ---QFEFHSGPTLDVDWRN--NVSFATSSTDNMIY  381 (563)
Q Consensus       307 ~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~---~~~~~~~~~~~~~~~~--~~~~~~~~~d~~i~  381 (563)
                      ++....+|+..|++|+|+|++++|++|+.||+|+|||+.++....   ....|..++.++.|.+  ...+++++.|+.|+
T Consensus         3 ~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~   82 (342)
T d1yfqa_           3 IVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEIL   82 (342)
T ss_dssp             EEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEE
T ss_pred             eEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEccccccee
Confidence            445678999999999999999999999999999999997654332   2335888999999964  34688999999999


Q ss_pred             EEEcCCCcceeeecCCCcc-eeEEEECCCCCEEEEEeCCCcEEEEeCCCCcee----eeeccc--CCCEEEEEEccCCCC
Q 008496          382 VCKIGENRPIKTFAGHQGE-VNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYV----HDLREH--SKEIYTIRWSPTGSG  454 (563)
Q Consensus       382 ~~~~~~~~~~~~~~~h~~~-i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~----~~~~~~--~~~i~~~~~~p~~~~  454 (563)
                      +|+............+... .....+.++...+++++.|+++++||++.....    .....+  ........+.+.+. 
T Consensus        83 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  161 (342)
T d1yfqa_          83 KVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSS-  161 (342)
T ss_dssp             EECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSS-
T ss_pred             eeecccccccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCC-
Confidence            9999887766666555444 345556778889999999999999998644322    122221  12223334444432 


Q ss_pred             CCCCCCcEEEEEEeCCCeEEEEeCCCCeE---EEEecCCCCCEEEEEEc-CCCCEEEEEeCCCcEEEEecCCCee-----
Q 008496          455 TNNPNQQLILASASFDSTVKLWDVELGKL---LYSLNGHREPVYSLAFS-PTGEYLASGSLDKSMHIWSLKEGKI-----  525 (563)
Q Consensus       455 ~~~~~~~~~l~s~s~dg~i~iwd~~~~~~---~~~~~~h~~~i~~l~~s-pdg~~lasgs~dg~v~iw~~~~~~~-----  525 (563)
                              .+++++.|+.|++||+.....   ......+...+.+..+. +++..+++++.||.+.+|+......     
T Consensus       162 --------~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~  233 (342)
T d1yfqa_         162 --------RLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSS  233 (342)
T ss_dssp             --------EEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCT
T ss_pred             --------ceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeecc
Confidence                    688999999999999876543   22333445556666654 4678999999999999999865321     


Q ss_pred             -EEEE---e-------cCCCEEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496          526 -VKTY---T-------GNGGIFEVCWNKEGDKIAACFANHTVCVLDFR  562 (563)
Q Consensus       526 -~~~~---~-------~~~~i~~l~w~~~g~~la~~~~~~~v~v~~~~  562 (563)
                       ...+   .       ....+.+++|+|+|++||+|+.||.|.|||++
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~  281 (342)
T d1yfqa_         234 KRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQ  281 (342)
T ss_dssp             TCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETT
T ss_pred             ccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECC
Confidence             1111   1       12357899999999999999999999999975

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.92  E-value=2e-21  Score=185.69  Aligned_cols=261  Identities=13%  Similarity=0.131  Sum_probs=204.0

Q ss_pred             EEEEeCCCeEEEEEcC-CceeEeeccCCCCEEEEEeCCCCCEE-EEeeCCCcEEEEECCCCceeEEeeecccCeEEEecC
Q 008496          289 LATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYL-LTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR  366 (563)
Q Consensus       289 l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l-~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~  366 (563)
                      .++++.|+.|.+||.. ++...++... ..+.+++|+|+|++| ++++.+++|++||+.+++.+..+..+..+ ..+.+.
T Consensus         5 yV~~~~~~~v~v~D~~t~~~~~~i~~g-~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~~-~~~~~~   82 (301)
T d1l0qa2           5 YIANSESDNISVIDVTSNKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSP-QGVAVS   82 (301)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSE-EEEEEC
T ss_pred             EEEECCCCEEEEEECCCCeEEEEEECC-CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeeccccc-cccccc
Confidence            3567789999999975 4555555433 456899999999987 56778999999999999988887766543 455554


Q ss_pred             CC--ceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEE-EEeCCCcEEEEeCCCCceeeeecccCCCE
Q 008496          367 NN--VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLA-SCSDDVTAKIWNMKQDKYVHDLREHSKEI  443 (563)
Q Consensus       367 ~~--~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~la-s~s~dg~i~iwd~~~~~~~~~~~~~~~~i  443 (563)
                      .+  ..++++..++.+.+|+.........+..+ ....++.|+|++..++ ++..++.+.+|+..+...+..+..+ ...
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  160 (301)
T d1l0qa2          83 PDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSP  160 (301)
T ss_dssp             TTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-SSE
T ss_pred             cccccccccccccceeeecccccceeeeecccc-ccceEEEeecCCCeeeeeeccccceeeeeccccceeeecccC-CCc
Confidence            33  35566778889999999888877777654 4567899999998765 5566889999999999888776544 457


Q ss_pred             EEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeC---CCcEEEEec
Q 008496          444 YTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSL---DKSMHIWSL  520 (563)
Q Consensus       444 ~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~---dg~v~iw~~  520 (563)
                      ..+.++|++.        .+++++..++.+.+|+....+....+..+ ..+..++|++++..++.++.   ++.|++||+
T Consensus       161 ~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~  231 (301)
T d1l0qa2         161 KGIAVTPDGT--------KVYVANFDSMSISVIDTVTNSVIDTVKVE-AAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDT  231 (301)
T ss_dssp             EEEEECTTSS--------EEEEEETTTTEEEEEETTTTEEEEEEECS-SEEEEEEECTTSSEEEEEEECSSCCEEEEEET
T ss_pred             eEEEeecccc--------ceeeecccccccccccccceeeeeccccc-CCcceeeccccccccccccccceeeeeeeeec
Confidence            8889988764        34455555678889998888777776644 45688999999998876543   468999999


Q ss_pred             CCCeeEEEEecCCCEEEEEEcCCCCEE-EEEECCCeEEEEEee
Q 008496          521 KEGKIVKTYTGNGGIFEVCWNKEGDKI-AACFANHTVCVLDFR  562 (563)
Q Consensus       521 ~~~~~~~~~~~~~~i~~l~w~~~g~~l-a~~~~~~~v~v~~~~  562 (563)
                      .+++++..+.....+..++|+|||++| +++..+++|.|||+.
T Consensus       232 ~t~~~~~~~~~~~~~~~va~spdg~~l~va~~~~~~i~v~D~~  274 (301)
T d1l0qa2         232 GTNKITARIPVGPDPAGIAVTPDGKKVYVALSFCNTVSVIDTA  274 (301)
T ss_dssp             TTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred             CCCeEEEEEcCCCCEEEEEEeCCCCEEEEEECCCCeEEEEECC
Confidence            999999998887889999999999987 566678999999974

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.91  E-value=2.5e-21  Score=185.06  Aligned_cols=271  Identities=12%  Similarity=0.139  Sum_probs=203.0

Q ss_pred             EEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEE-EEEeCCCeEEEEEcC-Cce
Q 008496          230 LASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLL-ATGSYDGQARIWSTN-GDL  307 (563)
Q Consensus       230 latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l-~sg~~dg~i~vw~~~-~~~  307 (563)
                      .++++.|++|.+||+.+++.             ++.+..     ...+..++|+|||++| ++++.++.|++||.. +..
T Consensus         5 yV~~~~~~~v~v~D~~t~~~-------------~~~i~~-----g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~   66 (301)
T d1l0qa2           5 YIANSESDNISVIDVTSNKV-------------TATIPV-----GSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNV   66 (301)
T ss_dssp             EEEETTTTEEEEEETTTTEE-------------EEEEEC-----SSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEE
T ss_pred             EEEECCCCEEEEEECCCCeE-------------EEEEEC-----CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCce
Confidence            45678999999999987542             111111     2347889999999987 466788999999986 455


Q ss_pred             eEeeccCCCCEEEEEeCCCCCEEE-EeeCCCcEEEEECCCCceeEEeeecccCeEEEecCCC--ceEEEEeCCCeEEEEE
Q 008496          308 KCTLSKHKGPIFSLKWNKKGDYLL-TGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNN--VSFATSSTDNMIYVCK  384 (563)
Q Consensus       308 ~~~~~~h~~~V~~l~~~~~~~~l~-s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~d~~i~~~~  384 (563)
                      ...+..|.. +..+.|++++.+++ ++..++.+.+|+..+++....+..+.. ...+.+..+  ..++++..++.+.+|+
T Consensus        67 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~dg~~~~~~~~~~~~~~~~~  144 (301)
T d1l0qa2          67 IATVPAGSS-PQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKS-PLGLALSPDGKKLYVTNNGDKTVSVIN  144 (301)
T ss_dssp             EEEEECSSS-EEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSS-EEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             eeeeecccc-ccccccccccccccccccccceeeecccccceeeeecccccc-ceEEEeecCCCeeeeeeccccceeeee
Confidence            566666654 58899999998765 556678899999999988777765543 344555433  3456677788999999


Q ss_pred             cCCCcceeeecCCCcceeEEEECCCCCEEEEEeCC-CcEEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEE
Q 008496          385 IGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDD-VTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLI  463 (563)
Q Consensus       385 ~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~d-g~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~  463 (563)
                      ......+..+..+ ..+.+++++|+++.+++++.+ +.+.+|+.........+.. ......++|++++.        .+
T Consensus       145 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~--------~~  214 (301)
T d1l0qa2         145 TVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKV-EAAPSGIAVNPEGT--------KA  214 (301)
T ss_dssp             TTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-SSEEEEEEECTTSS--------EE
T ss_pred             ccccceeeecccC-CCceEEEeeccccceeeecccccccccccccceeeeecccc-cCCcceeecccccc--------cc
Confidence            9988887777654 457789999999988777664 5677888777766555443 34567888988875        22


Q ss_pred             EEEE--eCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEE-EEEeCCCcEEEEecCCCeeEEEEec
Q 008496          464 LASA--SFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYL-ASGSLDKSMHIWSLKEGKIVKTYTG  531 (563)
Q Consensus       464 l~s~--s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l-asgs~dg~v~iw~~~~~~~~~~~~~  531 (563)
                      ++++  ..++.|++||+.+++.+..+..+ ..+.+++|||||++| ++++.|++|+|||+.++++++++..
T Consensus       215 ~v~~~~~~~~~v~v~D~~t~~~~~~~~~~-~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~~~~~v  284 (301)
T d1l0qa2         215 YVTNVDKYFNTVSMIDTGTNKITARIPVG-PDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMAV  284 (301)
T ss_dssp             EEEEECSSCCEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred             ccccccceeeeeeeeecCCCeEEEEEcCC-CCEEEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEEEeC
Confidence            2322  34578999999999998888754 457999999999987 6778899999999999999988864

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.90  E-value=1.2e-22  Score=205.53  Aligned_cols=312  Identities=13%  Similarity=0.045  Sum_probs=201.7

Q ss_pred             eeEecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCC
Q 008496          208 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT  287 (563)
Q Consensus       208 ~~~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~  287 (563)
                      +..+..|. .+..++|||||++|++++.|+++++||+.+++..        ....+....    .+...+.+++|+|||+
T Consensus        55 ~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~--------~~~~i~~~~----~~~~~~~s~~~spDG~  121 (426)
T d1hzua2          55 VKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPT--------KVAEIKIGI----EARSVESSKFKGYEDR  121 (426)
T ss_dssp             EEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCE--------EEEEEECCS----EEEEEEECCSTTCTTT
T ss_pred             EEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCcee--------EEEEEeCCC----CCcceEEeeeecCCCC
Confidence            45666664 5899999999999999999999999999876421        111111111    1223466778899999


Q ss_pred             EEEE-EeCCCeEEEEEcCC-ceeEeeccCCC-----------CEEEEEeCCCCCEEEEeeC-CCcEEEEECCCCceeE-E
Q 008496          288 LLAT-GSYDGQARIWSTNG-DLKCTLSKHKG-----------PIFSLKWNKKGDYLLTGSC-DKTAIVWDVKTEEWKQ-Q  352 (563)
Q Consensus       288 ~l~s-g~~dg~i~vw~~~~-~~~~~~~~h~~-----------~V~~l~~~~~~~~l~s~s~-D~~v~iwd~~~~~~~~-~  352 (563)
                      ++++ +..++.+++||... .....+..|..           ....+.+++++..++.... .+.+.+++........ .
T Consensus       122 ~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~  201 (426)
T d1hzua2         122 YTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVT  201 (426)
T ss_dssp             EEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEE
T ss_pred             EEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeE
Confidence            8755 45889999999764 34444444433           3344555566655544333 2344455444333222 2


Q ss_pred             eeecccCeEEEecCCCc--eEEEEeCCCeEEEEEcCCCcceeeecCC--CcceeEEEECCCCC--E-EEEEeCCCcEEEE
Q 008496          353 FEFHSGPTLDVDWRNNV--SFATSSTDNMIYVCKIGENRPIKTFAGH--QGEVNCVKWDPTGS--L-LASCSDDVTAKIW  425 (563)
Q Consensus       353 ~~~~~~~~~~~~~~~~~--~~~~~~~d~~i~~~~~~~~~~~~~~~~h--~~~i~~~~~~~~~~--~-las~s~dg~i~iw  425 (563)
                      ...+...+.++.+..+.  .+++...+..+.+++....+.+..+...  ......+.+.+.+.  . .++.+.|+.+.+|
T Consensus       202 ~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~  281 (426)
T d1hzua2         202 SIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLI  281 (426)
T ss_dssp             EEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEE
T ss_pred             EeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEe
Confidence            22344455666665443  3455667778889998887766555422  11222233322222  1 1233456777777


Q ss_pred             eCCC-------CceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEE-------EEeCCCeEEEEeCCCCeEEEEe----
Q 008496          426 NMKQ-------DKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILA-------SASFDSTVKLWDVELGKLLYSL----  487 (563)
Q Consensus       426 d~~~-------~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~-------s~s~dg~i~iwd~~~~~~~~~~----  487 (563)
                      +...       .+....+.+|...+.+++|+|++.         .|+       +++.|++|+|||+.++++..++    
T Consensus       282 ~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~---------~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~  352 (426)
T d1hzua2         282 GTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSS---------HLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIA  352 (426)
T ss_dssp             ECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCS---------EEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHH
T ss_pred             eccccccccccceEeEEEecCCCceeEEEcCCCCc---------eEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccc
Confidence            6543       356778889999999999999986         455       4566889999999988765544    


Q ss_pred             -----cCCCCCEEEEEEcCCCCEEE-EE----eCCCcEEEEecCCCeeEEEEecCCCEEEEEEcCCCCE
Q 008496          488 -----NGHREPVYSLAFSPTGEYLA-SG----SLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDK  546 (563)
Q Consensus       488 -----~~h~~~i~~l~~spdg~~la-sg----s~dg~v~iw~~~~~~~~~~~~~~~~i~~l~w~~~g~~  546 (563)
                           ..|...|.+++|||||++|+ ++    +.+|.|+|||.+++++.+.+.+..     ...|+|++
T Consensus       353 ~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~k~~~~i~~~~-----~~tp~Gk~  416 (426)
T d1hzua2         353 EWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKDPR-----LITPTGKF  416 (426)
T ss_dssp             HHHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEETTTTEEEEEECCTT-----CCSEEEEE
T ss_pred             hhcccCCCCccEEEEEECCCCCEEEEEEecCCCCCCeEEEEECCCCeEEEEECCCC-----ccCCCceE
Confidence                 24556799999999999774 33    357899999999999988887654     22466655

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.88  E-value=1.9e-21  Score=189.60  Aligned_cols=282  Identities=11%  Similarity=0.006  Sum_probs=193.1

Q ss_pred             EEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEE-EEeCCCeEE
Q 008496          221 CAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLA-TGSYDGQAR  299 (563)
Q Consensus       221 ~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~-sg~~dg~i~  299 (563)
                      .+|++++++|++++.|++|.+||+.+++.             ++...   .++...+.+++|+|||++++ +++.++.|+
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~-------------~~t~~---~~~~~~p~~l~~spDG~~l~v~~~~~~~v~   65 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTV-------------YKSCV---MPDKFGPGTAMMAPDNRTAYVLNNHYGDIY   65 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEE-------------EEEEE---CSSCCSSCEEEECTTSSEEEEEETTTTEEE
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCE-------------EEEEE---cCCCCCcceEEECCCCCEEEEEECCCCcEE
Confidence            47899999999999999999999987542             11111   11234567999999999874 556789999


Q ss_pred             EEEcCCc-eeEeeccC------CCCEEEEEeCCCCCEEEEee------------CCCcEEEEECCCCceeEEeeeccc--
Q 008496          300 IWSTNGD-LKCTLSKH------KGPIFSLKWNKKGDYLLTGS------------CDKTAIVWDVKTEEWKQQFEFHSG--  358 (563)
Q Consensus       300 vw~~~~~-~~~~~~~h------~~~V~~l~~~~~~~~l~s~s------------~D~~v~iwd~~~~~~~~~~~~~~~--  358 (563)
                      +||.... ....+...      ...+..++|+|+|+++++++            .++.+.+||..+++....+..+..  
T Consensus        66 ~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  145 (346)
T d1jmxb_          66 GIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPR  145 (346)
T ss_dssp             EEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCS
T ss_pred             EEeCccCeeeeeecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccC
Confidence            9997643 33333221      22456789999999988765            467789999887765544333221  


Q ss_pred             CeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCC--------------------------CE
Q 008496          359 PTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTG--------------------------SL  412 (563)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~--------------------------~~  412 (563)
                      ....+.+.++..+...+  ..+.+|+..+.+.+..+..+.. ...+.++|++                          ..
T Consensus       146 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (346)
T d1jmxb_         146 QVYLMRAADDGSLYVAG--PDIYKMDVKTGKYTVALPLRNW-NRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQD  222 (346)
T ss_dssp             SCCCEEECTTSCEEEES--SSEEEECTTTCCEEEEECSTTC-CCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC------
T ss_pred             ceEEEEecCCCEEEEeC--CcceEEEccCCCEEEEEecCCC-ccceEEeccccEEEEEecCCCceEeeeeeeeeccCcee
Confidence            22223334444443333  3467777777766666543321 1222233332                          33


Q ss_pred             EEEEeCCCcEEEEeCCCCceee-eecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCC
Q 008496          413 LASCSDDVTAKIWNMKQDKYVH-DLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHR  491 (563)
Q Consensus       413 las~s~dg~i~iwd~~~~~~~~-~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~  491 (563)
                      ++++..+..+.+|++.++.... .+..|...+..+.++|++.         .++.+. ++.|++||..+++.+..+. +.
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~-~~~v~v~d~~~~~~~~~~~-~~  291 (346)
T d1jmxb_         223 PATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDP---------NQIYGV-LNRLAKYDLKQRKLIKAAN-LD  291 (346)
T ss_dssp             -CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCT---------TEEEEE-ESEEEEEETTTTEEEEEEE-CS
T ss_pred             EeeccCCceEEEEECCCCceEEEEeecccceeEEEEEeCCCC---------EEEEec-CCeEEEEECCCCcEEEEEc-CC
Confidence            4445556678888888776543 3456777888899988764         244443 4689999999999988776 44


Q ss_pred             CCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEecC
Q 008496          492 EPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGN  532 (563)
Q Consensus       492 ~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~~  532 (563)
                      ..+.+++|||||++|++|+.|+.|+|||+.+++.++++...
T Consensus       292 ~~~~~va~s~DG~~l~v~~~d~~v~v~D~~t~~~i~~i~~p  332 (346)
T d1jmxb_         292 HTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLP  332 (346)
T ss_dssp             SCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEECS
T ss_pred             CCEEEEEEcCCCCEEEEEeCCCcEEEEECccCCEEEEEECC
Confidence            57899999999999999999999999999999999988753

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.88  E-value=7.3e-21  Score=184.71  Aligned_cols=285  Identities=11%  Similarity=0.067  Sum_probs=198.0

Q ss_pred             CEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEE-EEEeCCCeEEEEEcC-C
Q 008496          228 SLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLL-ATGSYDGQARIWSTN-G  305 (563)
Q Consensus       228 ~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l-~sg~~dg~i~vw~~~-~  305 (563)
                      .+|++++.|++|+|||+.+++.             ++.+..  ......+..++|+|||+++ ++++.++.|++||.. +
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~-------------~~~i~~--~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~   66 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAV-------------DKVITI--ADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTG   66 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEE-------------EEEEEC--TTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTC
T ss_pred             eEEEEEcCCCEEEEEECCCCeE-------------EEEEEC--CCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCC
Confidence            4799999999999999986532             112211  1123447789999999987 566789999999975 4


Q ss_pred             ceeEeeccCCC-----CEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecCCCceEEEEeCCCeE
Q 008496          306 DLKCTLSKHKG-----PIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMI  380 (563)
Q Consensus       306 ~~~~~~~~h~~-----~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i  380 (563)
                      +....+..+..     .+..++|+|+++++++++.+.....|..                             ...+..+
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~-----------------------------~~~~~~~  117 (337)
T d1pbyb_          67 ETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHF-----------------------------EVQPTRV  117 (337)
T ss_dssp             CEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCE-----------------------------EECCCEE
T ss_pred             cEEEEEecCCCcccccceeeEEEcCCCcEEEEeecCCcceeeec-----------------------------cccccce
Confidence            55555554433     3457899999999998876544433321                             1233455


Q ss_pred             EEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEEEEEccCCCCCC--CC
Q 008496          381 YVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTN--NP  458 (563)
Q Consensus       381 ~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~--~~  458 (563)
                      .+|+.........+.. ...+.+++|+|+|+++++++.+  +.+||..++.....+..+... ....+.|++....  ..
T Consensus       118 ~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~--~~~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  193 (337)
T d1pbyb_         118 ALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGLGRD--LHVMDPEAGTLVEDKPIQSWE-AETYAQPDVLAVWNQHE  193 (337)
T ss_dssp             EEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEESSS--EEEEETTTTEEEEEECSTTTT-TTTBCCCBCCCCCCCCT
T ss_pred             eeccccCCeEEEeccc-cCCceEEEEcCCCCEEEEEcCC--cceeeeecCcEEEEeecCCcc-ccceecCCcceeecccc
Confidence            6666666666555553 3457789999999999988654  678999988877665443221 1111222221100  00


Q ss_pred             CCc---EEEE----------EEeCCCeEEEEeCCCCeEEE-EecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCe
Q 008496          459 NQQ---LILA----------SASFDSTVKLWDVELGKLLY-SLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGK  524 (563)
Q Consensus       459 ~~~---~~l~----------s~s~dg~i~iwd~~~~~~~~-~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~  524 (563)
                      ...   ....          .++.++.+.+|+..++.... .+..+...+..++++|++.+++++  ++.|++||+.+++
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~  271 (337)
T d1pbyb_         194 SSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNA  271 (337)
T ss_dssp             TTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTE
T ss_pred             ccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEEEc--cccEEEEECCCCc
Confidence            000   0011          12234569999999887654 345577788999999999998866  4789999999999


Q ss_pred             eEEEEecCCCEEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496          525 IVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLDFR  562 (563)
Q Consensus       525 ~~~~~~~~~~i~~l~w~~~g~~la~~~~~~~v~v~~~~  562 (563)
                      ++........+.+++|+|||++|+++..+++|.|||.+
T Consensus       272 ~~~~~~~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~  309 (337)
T d1pbyb_         272 SIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAE  309 (337)
T ss_dssp             EEEEEECSSCCCEEEECTTSCEEEEESBSSEEEEEETT
T ss_pred             EEEEEcCCCCEEEEEECCCCCEEEEEeCCCcEEEEECC
Confidence            99998888889999999999999999999999999975

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.88  E-value=1.5e-21  Score=197.33  Aligned_cols=304  Identities=12%  Similarity=0.022  Sum_probs=192.7

Q ss_pred             eeEecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCC
Q 008496          208 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT  287 (563)
Q Consensus       208 ~~~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~  287 (563)
                      +..+..| ..+..++|||||++|++++.|+++++||+.++...        ....++..    ..+...+.+.+|+|||+
T Consensus        55 ~~~~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~--------~~~~i~~~----~~~~~~~~s~~~SpDG~  121 (432)
T d1qksa2          55 KTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPT--------TVAEIKIG----SEARSIETSKMEGWEDK  121 (432)
T ss_dssp             EEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCC--------EEEEEECC----SEEEEEEECCSTTCTTT
T ss_pred             EEEEeCC-CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCce--------EEEEEecC----CCCCCeEEecccCCCCC
Confidence            4456556 36999999999999999999999999998765421        11111111    11123356667899999


Q ss_pred             EE-EEEeCCCeEEEEEcC-CceeEeecc-----------CCCCEEEEEeCCCCCEE-EEeeCCCcEEEEECCCCceeEEe
Q 008496          288 LL-ATGSYDGQARIWSTN-GDLKCTLSK-----------HKGPIFSLKWNKKGDYL-LTGSCDKTAIVWDVKTEEWKQQF  353 (563)
Q Consensus       288 ~l-~sg~~dg~i~vw~~~-~~~~~~~~~-----------h~~~V~~l~~~~~~~~l-~s~s~D~~v~iwd~~~~~~~~~~  353 (563)
                      +| ++++.++.+++||.. +.....+..           +.+....+.++|+|.++ ++...++.|.+||..+.+.....
T Consensus       122 ~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~  201 (432)
T d1qksa2         122 YAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTT  201 (432)
T ss_dssp             EEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEE
T ss_pred             EEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEE
Confidence            76 678889999999975 444444433           34556778999999876 56667899999999887765544


Q ss_pred             eecc-cCeEEEecCCCc--eEEEEeCCCeEEEEEcCCCcceeeecC-----CCcceeEEEECCCCCEEEEEe-CCCcEEE
Q 008496          354 EFHS-GPTLDVDWRNNV--SFATSSTDNMIYVCKIGENRPIKTFAG-----HQGEVNCVKWDPTGSLLASCS-DDVTAKI  424 (563)
Q Consensus       354 ~~~~-~~~~~~~~~~~~--~~~~~~~d~~i~~~~~~~~~~~~~~~~-----h~~~i~~~~~~~~~~~las~s-~dg~i~i  424 (563)
                      .... ..+.++.+.++.  .++++..++.+.+++....+.+..+..     |........+...+...++.. .++.+.+
T Consensus       202 ~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~  281 (432)
T d1qksa2         202 EISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVAL  281 (432)
T ss_dssp             EEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEE
T ss_pred             EEcccCccccceECCCCCEEEEeccccceEEEeecccceEEEEeccCccccccCcccceecCCCCceecccccCCceEEe
Confidence            4333 345666666554  345556677888888877665544321     223333444444444444433 2666777


Q ss_pred             EeCCCCceeeeecccCCCEEEEEEccCCCCCC---C------------------------CCCcEEEEEEeCCCeEEEEe
Q 008496          425 WNMKQDKYVHDLREHSKEIYTIRWSPTGSGTN---N------------------------PNQQLILASASFDSTVKLWD  477 (563)
Q Consensus       425 wd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~---~------------------------~~~~~~l~s~s~dg~i~iwd  477 (563)
                      |+.....    ...|...+....++|++....   .                        |+. ..|++++.|+.+++|+
T Consensus       282 ~~~~~~~----~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~~~~~~~~sv~vpDg-~~la~~s~d~~~k~w~  356 (432)
T d1qksa2         282 IGTDPEG----HPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDI-KAMTGDGSDPEFKTLP  356 (432)
T ss_dssp             EECCTTT----CTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEG-GGCCCSSSCCCEEEEC
T ss_pred             ccccccc----ccccccEEEEEEEcCCCCeEEEEecCCccceeecccCCCCCCeeeEEEEEec-hhhcccccCCceEecc
Confidence            7654332    112233333333333321000   0                        001 1367777888888887


Q ss_pred             CCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEe-----CCCcEEEEecCCCeeEEEEecC
Q 008496          478 VELGKLLYSLNGHREPVYSLAFSPTGEYLASGS-----LDKSMHIWSLKEGKIVKTYTGN  532 (563)
Q Consensus       478 ~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs-----~dg~v~iw~~~~~~~~~~~~~~  532 (563)
                      +.++.   .+..|...|.+++|||||++|+...     .+|.|.|||.+++++.+.+++.
T Consensus       357 ~~~~~---~l~~~~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D~~T~k~~~~i~~~  413 (432)
T d1qksa2         357 IAEWA---GITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIKDE  413 (432)
T ss_dssp             HHHHH---TCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECCT
T ss_pred             ccccc---ccCCCCCcEEEeEECCCCCEEEEEEecCCCCCCcEEEEECCCceEEeEecCC
Confidence            65432   2335667899999999999886543     4688999999999998887654

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.85  E-value=2.8e-20  Score=181.23  Aligned_cols=278  Identities=13%  Similarity=0.045  Sum_probs=196.9

Q ss_pred             EEECCCCCEEEEEeCCCeEEEEEcCC-ceeEeec-cCCCCEEEEEeCCCCCEEE-EeeCCCcEEEEECCCCceeEEeeec
Q 008496          280 LDWNGEGTLLATGSYDGQARIWSTNG-DLKCTLS-KHKGPIFSLKWNKKGDYLL-TGSCDKTAIVWDVKTEEWKQQFEFH  356 (563)
Q Consensus       280 l~~s~~g~~l~sg~~dg~i~vw~~~~-~~~~~~~-~h~~~V~~l~~~~~~~~l~-s~s~D~~v~iwd~~~~~~~~~~~~~  356 (563)
                      ++|++++++|++++.++.|.+||+.. ++..++. .|...+.+++|+|+|++++ +++.++.|.+||+.+++....+...
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~   81 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLS   81 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESC
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeeccc
Confidence            46889999999999999999999874 4455554 4556678999999999874 5667899999999999887766543


Q ss_pred             ccC------eEEEecCCCc-eEEEE------------eCCCeEEEEEcCCCcceeeecCC--CcceeEEEECCCCCEEEE
Q 008496          357 SGP------TLDVDWRNNV-SFATS------------STDNMIYVCKIGENRPIKTFAGH--QGEVNCVKWDPTGSLLAS  415 (563)
Q Consensus       357 ~~~------~~~~~~~~~~-~~~~~------------~~d~~i~~~~~~~~~~~~~~~~h--~~~i~~~~~~~~~~~las  415 (563)
                      ...      +..+.+.++. .+++.            ..+..+.+++....+....+..+  ...+..+.+++++.++++
T Consensus        82 ~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (346)
T d1jmxb_          82 SVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVA  161 (346)
T ss_dssp             CSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEE
T ss_pred             ccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEEe
Confidence            321      2233444332 22222            24667778877665544333322  234566777888877765


Q ss_pred             EeCCCcEEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCC--C---------------CCcEEEEEEeCCCeEEEEeC
Q 008496          416 CSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNN--P---------------NQQLILASASFDSTVKLWDV  478 (563)
Q Consensus       416 ~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~--~---------------~~~~~l~s~s~dg~i~iwd~  478 (563)
                      +   +.+.+|+..+++.+..+..+.. ...+.++|++.....  .               .....++++..++.+.+||.
T Consensus       162 ~---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (346)
T d1jmxb_         162 G---PDIYKMDVKTGKYTVALPLRNW-NRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDL  237 (346)
T ss_dssp             S---SSEEEECTTTCCEEEEECSTTC-CCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEET
T ss_pred             C---CcceEEEccCCCEEEEEecCCC-ccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEEC
Confidence            3   4588999998888777654432 233444554432110  0               01112344556678999999


Q ss_pred             CCCeEEE-EecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEecCCCEEEEEEcCCCCEEEEEECCCeEE
Q 008496          479 ELGKLLY-SLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVC  557 (563)
Q Consensus       479 ~~~~~~~-~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~~~~i~~l~w~~~g~~la~~~~~~~v~  557 (563)
                      .++.... .+..|...+.++.++|++.+++.+.. +.|.+||..+++++..+.....+.+++|+|||++|+++..++.|.
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~v~d~~~~~~~~~~~~~~~~~~va~s~DG~~l~v~~~d~~v~  316 (346)
T d1jmxb_         238 KTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVL-NRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFNDLA  316 (346)
T ss_dssp             TTCCEEEEEEEECSSCEEEEEECSSCTTEEEEEE-SEEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEEEESBSSEEE
T ss_pred             CCCceEEEEeecccceeEEEEEeCCCCEEEEecC-CeEEEEECCCCcEEEEEcCCCCEEEEEEcCCCCEEEEEeCCCcEE
Confidence            9887654 34567888999999999998887764 579999999999999888777899999999999999999999999


Q ss_pred             EEEee
Q 008496          558 VLDFR  562 (563)
Q Consensus       558 v~~~~  562 (563)
                      |||.+
T Consensus       317 v~D~~  321 (346)
T d1jmxb_         317 VFNPD  321 (346)
T ss_dssp             EEETT
T ss_pred             EEECc
Confidence            99975

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.84  E-value=1.2e-19  Score=175.93  Aligned_cols=273  Identities=10%  Similarity=0.055  Sum_probs=181.7

Q ss_pred             CCCceEEEEECCCCCEE-EEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEE
Q 008496          214 HTSEVCACAWSPAGSLL-ASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATG  292 (563)
Q Consensus       214 h~~~V~~~~~sp~~~~l-atgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg  292 (563)
                      +...+.+++|+|||++| ++++.|+.|++||+.+++.....          ..  .........+..++|+|++++++++
T Consensus        32 ~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~----------~~--~~~~~~~~~~~~v~~s~dg~~l~~~   99 (337)
T d1pbyb_          32 AGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRI----------DL--STPEERVKSLFGAALSPDGKTLAIY   99 (337)
T ss_dssp             CTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEE----------EC--CBTTEEEECTTCEEECTTSSEEEEE
T ss_pred             CCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEE----------ec--CCCcccccceeeEEEcCCCcEEEEe
Confidence            34567889999999976 56778999999999876532110          00  0000111234568999999999888


Q ss_pred             eC------------CCeEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCe
Q 008496          293 SY------------DGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPT  360 (563)
Q Consensus       293 ~~------------dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~  360 (563)
                      ..            ++.+.+|+...........+...+.++.|+|+|+++++++.  .+.+||..+++....+..+....
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~--~~~~~d~~~~~~~~~~~~~~~~~  177 (337)
T d1pbyb_         100 ESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGR--DLHVMDPEAGTLVEDKPIQSWEA  177 (337)
T ss_dssp             EEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEESS--SEEEEETTTTEEEEEECSTTTTT
T ss_pred             ecCCcceeeeccccccceeeccccCCeEEEeccccCCceEEEEcCCCCEEEEEcC--CcceeeeecCcEEEEeecCCccc
Confidence            64            56788888765443333334556788999999999999865  47789999988776655433211


Q ss_pred             EEEecCCCceE-EEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceee-eecc
Q 008496          361 LDVDWRNNVSF-ATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVH-DLRE  438 (563)
Q Consensus       361 ~~~~~~~~~~~-~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~-~~~~  438 (563)
                      ....-.+...+ ......                   +...+.......+...+..++.++.+.+|+..++.... .+..
T Consensus       178 ~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (337)
T d1pbyb_         178 ETYAQPDVLAVWNQHESS-------------------GVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRI  238 (337)
T ss_dssp             TTBCCCBCCCCCCCCTTT-------------------TEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEE
T ss_pred             cceecCCcceeecccccc-------------------ceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecC
Confidence            00000000000 000000                   00111122223333334445556779999998877543 3445


Q ss_pred             cCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 008496          439 HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIW  518 (563)
Q Consensus       439 ~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw  518 (563)
                      +......+.++|++.         +++++  ++.|++||+.+++.+..+. +...+.+++|||||++|++|+.|+.|.||
T Consensus       239 ~~~~~~~~~~~~~~~---------~~~~~--~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~s~dG~~l~v~~~~~~i~v~  306 (337)
T d1pbyb_         239 MDVFYFSTAVNPAKT---------RAFGA--YNVLESFDLEKNASIKRVP-LPHSYYSVNVSTDGSTVWLGGALGDLAAY  306 (337)
T ss_dssp             CSSCEEEEEECTTSS---------EEEEE--ESEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSCEEEEESBSSEEEEE
T ss_pred             CCcceEEEEecccce---------EEEEc--cccEEEEECCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEeCCCcEEEE
Confidence            667788888888764         44444  5899999999999998876 55678999999999999999999999999


Q ss_pred             ecCCCeeEEEEec
Q 008496          519 SLKEGKIVKTYTG  531 (563)
Q Consensus       519 ~~~~~~~~~~~~~  531 (563)
                      |+.+++.+++++.
T Consensus       307 D~~t~~~v~~i~~  319 (337)
T d1pbyb_         307 DAETLEKKGQVDL  319 (337)
T ss_dssp             ETTTCCEEEEEEC
T ss_pred             ECCCCcEEEEEEC
Confidence            9999999988764

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.83  E-value=1.8e-17  Score=163.43  Aligned_cols=308  Identities=9%  Similarity=-0.020  Sum_probs=204.3

Q ss_pred             cCCCCceEEEEECCCCCEEEEe-----eCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCC
Q 008496          212 EGHTSEVCACAWSPAGSLLASG-----SGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG  286 (563)
Q Consensus       212 ~~h~~~V~~~~~sp~~~~latg-----s~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g  286 (563)
                      ..|..++..++++|+|+.++..     +.++.+.+||..+++..             ..+..      .....++|+|||
T Consensus        17 ~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~-------------~~~~~------~~~~~~a~SpDG   77 (373)
T d2madh_          17 GAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSIL-------------GHVNG------GFLPNPVAAHSG   77 (373)
T ss_pred             ccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEE-------------EEEeC------CCCccEEEcCCC
Confidence            3577889999999999987653     23456888887665421             11111      112368999999


Q ss_pred             CEEEEEeC----------CCeEEEEEcCC-ceeEeeccCCCCE-------EEEEeCCCCCEEEEee--CCCcEEEEECCC
Q 008496          287 TLLATGSY----------DGQARIWSTNG-DLKCTLSKHKGPI-------FSLKWNKKGDYLLTGS--CDKTAIVWDVKT  346 (563)
Q Consensus       287 ~~l~sg~~----------dg~i~vw~~~~-~~~~~~~~h~~~V-------~~l~~~~~~~~l~s~s--~D~~v~iwd~~~  346 (563)
                      ++|++++.          ++.|++||... +....+..+....       ..+.|+++++.++...  .++.+.+|+..+
T Consensus        78 ~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~  157 (373)
T d2madh_          78 SEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGG  157 (373)
T ss_pred             CEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccC
Confidence            99998754          57899999764 4555555444433       4577888988766554  456889999887


Q ss_pred             CceeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCC------CcceeEEEECCCCCEEEEEeCCC
Q 008496          347 EEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGH------QGEVNCVKWDPTGSLLASCSDDV  420 (563)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h------~~~i~~~~~~~~~~~las~s~dg  420 (563)
                      .+.........  ...+.......|++.+.|+.+.+|+............+      ......+.+++++.+ +..+.++
T Consensus       158 ~~~~~~~~~~~--~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  234 (373)
T d2madh_         158 SSDDQLLSSPT--CYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRI-VWPVYSG  234 (373)
T ss_pred             CeEEEEeccce--eEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceE-EEecCCc
Confidence            76554433211  12233345567788999999999998877665544322      222445666766655 4667888


Q ss_pred             cEEEEeCCCCcee--eeecccCCCEE----------EEEEccCCCCCC-CCCCcEEEEEEeCCCeEEEEeCCCCeEEEEe
Q 008496          421 TAKIWNMKQDKYV--HDLREHSKEIY----------TIRWSPTGSGTN-NPNQQLILASASFDSTVKLWDVELGKLLYSL  487 (563)
Q Consensus       421 ~i~iwd~~~~~~~--~~~~~~~~~i~----------~~~~~p~~~~~~-~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~  487 (563)
                      .+.+|+.......  ..+..+.....          .+.++|++.... .......+++...++.|.+||..+++.+..+
T Consensus       235 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~  314 (373)
T d2madh_         235 KILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQI  314 (373)
T ss_pred             eEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEe
Confidence            9999998776532  22222222232          344444443110 0111224567778889999999999998877


Q ss_pred             cCCCCCEEEEEEcCCCC--EEEEEeCCCcEEEEecCCCeeEEEEecC-CCEEEEEEcC
Q 008496          488 NGHREPVYSLAFSPTGE--YLASGSLDKSMHIWSLKEGKIVKTYTGN-GGIFEVCWNK  542 (563)
Q Consensus       488 ~~h~~~i~~l~~spdg~--~lasgs~dg~v~iw~~~~~~~~~~~~~~-~~i~~l~w~~  542 (563)
                      . +...+.+++|||||+  ++++++.|+.|+|||+.+|+.++++... .....|+...
T Consensus       315 ~-~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g~~P~~l~~~~  371 (373)
T d2madh_         315 S-LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGSGPQVLSVMN  371 (373)
T ss_pred             c-CCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEECCCCCCCcEEEEec
Confidence            6 556789999999998  4578999999999999999999998753 4455555544

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.80  E-value=1.3e-16  Score=157.16  Aligned_cols=273  Identities=10%  Similarity=0.001  Sum_probs=185.1

Q ss_pred             CCCCeEEEEECCCCCEEEEE-----eCCCeEEEEEcC-CceeEeeccCCCCEEEEEeCCCCCEEEEee----------CC
Q 008496          273 KSKDVTTLDWNGEGTLLATG-----SYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGS----------CD  336 (563)
Q Consensus       273 ~~~~V~~l~~s~~g~~l~sg-----~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s----------~D  336 (563)
                      ...++.+++++|||+.++..     +..+.+.+||.. ++...++..+..+  .+.|+|+|++|++++          .+
T Consensus        19 ~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~~~~   96 (373)
T d2madh_          19 ADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRT   96 (373)
T ss_pred             CCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCCc--cEEEcCCCCEEEEEeecCCcccccccc
Confidence            34668889999999998765     234578899854 6666677666554  789999999998875          45


Q ss_pred             CcEEEEECCCCceeEEeeecccCeEEEecCCCceEEEE-----------eCCCeEEEEEcCCCcceeeecCCCcceeEEE
Q 008496          337 KTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATS-----------STDNMIYVCKIGENRPIKTFAGHQGEVNCVK  405 (563)
Q Consensus       337 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~  405 (563)
                      +.|.+||+.+++....+..+............ .++.+           ..++.+.+|+....+..    .+.....++.
T Consensus        97 ~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~-~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~  171 (373)
T d2madh_          97 DYVEVFDPVTFLPIADIELPDAPRFDVGPYSW-MNANTPNNADLLFFQFAAGPAVGLVVQGGSSDD----QLLSSPTCYH  171 (373)
T ss_pred             eEEEEEECCCCcEEEEEecCCcceeEeccCCC-cEEEEeCCCcEEEEEEcCCCceEEeeccCCeEE----EEeccceeEE
Confidence            78999999999988877666554443332222 12222           22333444444333322    2334466889


Q ss_pred             ECCCCCE-EEEEeCCCcEEEEeCCCCceeeeecccC------CCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeC
Q 008496          406 WDPTGSL-LASCSDDVTAKIWNMKQDKYVHDLREHS------KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDV  478 (563)
Q Consensus       406 ~~~~~~~-las~s~dg~i~iwd~~~~~~~~~~~~~~------~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~  478 (563)
                      ++|+++. +++.+.|+.+.+|+............+.      .....+.+.+++          .++..+.++.+.+|+.
T Consensus       172 ~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~v~~~~~  241 (373)
T d2madh_         172 IHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSG----------RIVWPVYSGKILQADI  241 (373)
T ss_pred             EecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCc----------eEEEecCCceEEEEEc
Confidence            9999875 4688899999999998877655443221      112233344433          3556678899999998


Q ss_pred             CCCeEEE--EecCCC----------CCEEEEEEcCCCCEEE----------EEeCCCcEEEEecCCCeeEEEEecCCCEE
Q 008496          479 ELGKLLY--SLNGHR----------EPVYSLAFSPTGEYLA----------SGSLDKSMHIWSLKEGKIVKTYTGNGGIF  536 (563)
Q Consensus       479 ~~~~~~~--~~~~h~----------~~i~~l~~spdg~~la----------sgs~dg~v~iw~~~~~~~~~~~~~~~~i~  536 (563)
                      ..+....  ....+.          .....++++|++..++          +...++.|.+||..+++.+..+.....+.
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~~~~~~~  321 (373)
T d2madh_         242 SAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVD  321 (373)
T ss_pred             CCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEecCCCCee
Confidence            8765432  222111          2234466777776544          45566789999999999999988878899


Q ss_pred             EEEEcCCCCE--EEEEECCCeEEEEEee
Q 008496          537 EVCWNKEGDK--IAACFANHTVCVLDFR  562 (563)
Q Consensus       537 ~l~w~~~g~~--la~~~~~~~v~v~~~~  562 (563)
                      .++|+|||+.  ++++..+++|.|||..
T Consensus       322 ~~a~spDG~~~l~vt~~~d~~v~v~D~~  349 (373)
T d2madh_         322 AISVAQDGGPDLYALSAGTEVLHIYDAG  349 (373)
T ss_pred             EEEECCCCCEEEEEEeCCCCeEEEEECC
Confidence            9999999985  3677889999999975

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.80  E-value=1.4e-18  Score=170.04  Aligned_cols=284  Identities=11%  Similarity=0.062  Sum_probs=184.6

Q ss_pred             EEEECCCCCEEEEe-----eCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEEe-
Q 008496          220 ACAWSPAGSLLASG-----SGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGS-  293 (563)
Q Consensus       220 ~~~~sp~~~~latg-----s~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~-  293 (563)
                      ..+.+|+++.++..     +.++.+.+||..+++.             +.....      ..+..++|||||++|++++ 
T Consensus         6 ~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~-------------~~~~~~------g~~~~~a~SpDg~~l~v~~~   66 (355)
T d2bbkh_           6 LEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRV-------------IGMIDG------GFLPNPVVADDGSFIAHAST   66 (355)
T ss_dssp             CCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEE-------------EEEEEE------CSSCEEEECTTSSCEEEEEE
T ss_pred             eEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcE-------------EEEEEC------CCCCceEEcCCCCEEEEEeC
Confidence            34678999887654     3466799999876542             111111      1234689999999887653 


Q ss_pred             ---------CCCeEEEEEcCC-ceeEeeccCC-------CCEEEEEeCCCCCEEEEee--CCCcEEEEECCCCceeEEee
Q 008496          294 ---------YDGQARIWSTNG-DLKCTLSKHK-------GPIFSLKWNKKGDYLLTGS--CDKTAIVWDVKTEEWKQQFE  354 (563)
Q Consensus       294 ---------~dg~i~vw~~~~-~~~~~~~~h~-------~~V~~l~~~~~~~~l~s~s--~D~~v~iwd~~~~~~~~~~~  354 (563)
                               .|+.|++||... +....+..+.       .....+.|+|++++++.++  .+..+.+||..+++....+.
T Consensus        67 ~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  146 (355)
T d2bbkh_          67 VFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLD  146 (355)
T ss_dssp             EEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEE
T ss_pred             CCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEe
Confidence                     478999999764 4444443222       2234678999999887764  46789999999998777665


Q ss_pred             ecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeee------cCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCC
Q 008496          355 FHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTF------AGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMK  428 (563)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~------~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~  428 (563)
                      ......  ........++..+.|+....+.......+..+      ..+...+....+.+++..++.++.++.+.+|++.
T Consensus       147 ~~~~~~--~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  224 (355)
T d2bbkh_         147 VPDCYH--IFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLS  224 (355)
T ss_dssp             CCSEEE--EEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECT
T ss_pred             cCCcce--EeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccceecceeeeccccCCCCeEEEecCCCeEEEEecC
Confidence            433211  11222334444555665555444332222111      1234456667888888899999999999999998


Q ss_pred             CCceee--eecccC----------CCEEEEEEccCCCCCCCCCCcEEEEEEeC---------CCeEEEEeCCCCeEEEEe
Q 008496          429 QDKYVH--DLREHS----------KEIYTIRWSPTGSGTNNPNQQLILASASF---------DSTVKLWDVELGKLLYSL  487 (563)
Q Consensus       429 ~~~~~~--~~~~~~----------~~i~~~~~~p~~~~~~~~~~~~~l~s~s~---------dg~i~iwd~~~~~~~~~~  487 (563)
                      .+....  ....+.          .....+.++|++.        .++++...         ...|.+||..+++.+..+
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~--------~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~  296 (355)
T d2bbkh_         225 SGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALD--------RIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKF  296 (355)
T ss_dssp             TSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTT--------EEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEE
T ss_pred             CCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCC--------eEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEe
Confidence            765321  111111          1123355666654        22222221         247999999999988877


Q ss_pred             cCCCCCEEEEEEcCCCC--EEEEEeCCCcEEEEecCCCeeEEEEecCC
Q 008496          488 NGHREPVYSLAFSPTGE--YLASGSLDKSMHIWSLKEGKIVKTYTGNG  533 (563)
Q Consensus       488 ~~h~~~i~~l~~spdg~--~lasgs~dg~v~iw~~~~~~~~~~~~~~~  533 (563)
                      .. ...+.+++|||||+  ++++++.|+.|.|||++++++++++...+
T Consensus       297 ~~-~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~~~G  343 (355)
T d2bbkh_         297 EM-GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLG  343 (355)
T ss_dssp             EE-EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCC
T ss_pred             cC-CCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEEEEeCcC
Confidence            63 34578999999997  45677889999999999999999987543

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.79  E-value=1e-16  Score=155.00  Aligned_cols=275  Identities=11%  Similarity=0.187  Sum_probs=176.6

Q ss_pred             EEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEEe-CCCeEEEEEcCCc-
Q 008496          229 LLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGS-YDGQARIWSTNGD-  306 (563)
Q Consensus       229 ~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~-~dg~i~vw~~~~~-  306 (563)
                      ++++++.|++|++|++.....        +.  .++..     .+...|..|+|||||++|++++ .|+.|++|+.... 
T Consensus         6 v~v~~~~~~~I~v~~~~~~~~--------l~--~~~~~-----~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~   70 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEGA--------LT--LTQVV-----DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDD   70 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSC--------EE--EEEEE-----ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTT
T ss_pred             EEEECCCCCcEEEEEEcCCCC--------eE--EEEEE-----cCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCC
Confidence            567888999999999864321        01  11111     2346689999999999986555 5899999997532 


Q ss_pred             eeEe---eccCCCCEEEEEeCCCCCEEEEeeC-CCcEEEEECCCCceeEEee--ecccCeEEEecCCC--ceEEEEeCCC
Q 008496          307 LKCT---LSKHKGPIFSLKWNKKGDYLLTGSC-DKTAIVWDVKTEEWKQQFE--FHSGPTLDVDWRNN--VSFATSSTDN  378 (563)
Q Consensus       307 ~~~~---~~~h~~~V~~l~~~~~~~~l~s~s~-D~~v~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~--~~~~~~~~d~  378 (563)
                      ....   ...+...+..++|+|+|++|++++. ++++.+|+...........  .+...+..+.+..+  ..+.....+.
T Consensus        71 ~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~  150 (333)
T d1ri6a_          71 GALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQD  150 (333)
T ss_dssp             CCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGT
T ss_pred             CcEEEeeecccCCCceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccc
Confidence            1111   2234455678999999999988875 6789999877655443332  23333444444433  3445555677


Q ss_pred             eEEEEEcCCCcceee------ecCCCcceeEEEECCCCCEEEEEe-CCCcEEEEeCCCCce----eeeec------ccCC
Q 008496          379 MIYVCKIGENRPIKT------FAGHQGEVNCVKWDPTGSLLASCS-DDVTAKIWNMKQDKY----VHDLR------EHSK  441 (563)
Q Consensus       379 ~i~~~~~~~~~~~~~------~~~h~~~i~~~~~~~~~~~las~s-~dg~i~iwd~~~~~~----~~~~~------~~~~  441 (563)
                      .|.+|+.........      ...+......++|++++..++... ..+...+|+......    ...+.      ....
T Consensus       151 ~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (333)
T d1ri6a_         151 RICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTR  230 (333)
T ss_dssp             EEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCC
T ss_pred             eeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccc
Confidence            888888866543221      112334567899999998876554 566788887653321    11111      1223


Q ss_pred             CEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEE---ecCCCCCEEEEEEcCCCCEEEEEe-CCCcEEE
Q 008496          442 EIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYS---LNGHREPVYSLAFSPTGEYLASGS-LDKSMHI  517 (563)
Q Consensus       442 ~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~---~~~h~~~i~~l~~spdg~~lasgs-~dg~v~i  517 (563)
                      ....+++++++.        .+++++..++.+.+|++........   .......+..++|||||++|++++ .++.|.+
T Consensus       231 ~~~~~~~s~d~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v  302 (333)
T d1ri6a_         231 WAADIHITPDGR--------HLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISV  302 (333)
T ss_dssp             CEEEEEECTTSS--------EEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEE
T ss_pred             cceeEEEecccC--------ceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEE
Confidence            456677777764        4677788889999998875432222   222345567899999999987765 5689999


Q ss_pred             E--ecCCCeeE
Q 008496          518 W--SLKEGKIV  526 (563)
Q Consensus       518 w--~~~~~~~~  526 (563)
                      |  |..+|++.
T Consensus       303 ~~id~~tG~l~  313 (333)
T d1ri6a_         303 YEIVGEQGLLH  313 (333)
T ss_dssp             EEEETTTTEEE
T ss_pred             EEEECCCCcEE
Confidence            9  45677653

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.74  E-value=1.8e-15  Score=146.03  Aligned_cols=267  Identities=12%  Similarity=0.179  Sum_probs=177.7

Q ss_pred             EEEEEeCCCeEEEEEcCC--ce-eEeeccCCCCEEEEEeCCCCCEEEEee-CCCcEEEEECCCCceeEEee---ecccCe
Q 008496          288 LLATGSYDGQARIWSTNG--DL-KCTLSKHKGPIFSLKWNKKGDYLLTGS-CDKTAIVWDVKTEEWKQQFE---FHSGPT  360 (563)
Q Consensus       288 ~l~sg~~dg~i~vw~~~~--~~-~~~~~~h~~~V~~l~~~~~~~~l~s~s-~D~~v~iwd~~~~~~~~~~~---~~~~~~  360 (563)
                      .+++++.|+.|++|+++.  .+ ......|.+.|.+|+|+|+|++|++++ .|+.|++|++........+.   .....+
T Consensus         6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p   85 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSL   85 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCC
T ss_pred             EEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCc
Confidence            457788999999999753  22 223346888999999999999986554 58999999987654333222   222334


Q ss_pred             EEEecCCCce--EEEEeCCCeEEEEEcCCCccee--eecCCCcceeEEEECCCCCEEEEEeC-CCcEEEEeCCCCceeee
Q 008496          361 LDVDWRNNVS--FATSSTDNMIYVCKIGENRPIK--TFAGHQGEVNCVKWDPTGSLLASCSD-DVTAKIWNMKQDKYVHD  435 (563)
Q Consensus       361 ~~~~~~~~~~--~~~~~~d~~i~~~~~~~~~~~~--~~~~h~~~i~~~~~~~~~~~las~s~-dg~i~iwd~~~~~~~~~  435 (563)
                      ..+.|.++..  +++...++.+.+|+........  ....+...+.++.++|+++++++++. +..|.+|+.........
T Consensus        86 ~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~  165 (333)
T d1ri6a_          86 THISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVA  165 (333)
T ss_dssp             SEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEE
T ss_pred             eEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCccee
Confidence            5566765533  3444467788888876655433  33456667889999999998887775 55789999765533221


Q ss_pred             ------ecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC----eEEEEec------CCCCCEEEEEE
Q 008496          436 ------LREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG----KLLYSLN------GHREPVYSLAF  499 (563)
Q Consensus       436 ------~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~----~~~~~~~------~h~~~i~~l~~  499 (563)
                            ..........+.|++++.        ....+....+...+|+....    .....+.      ........+++
T Consensus       166 ~~~~~~~~~~g~~p~~i~~~~~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (333)
T d1ri6a_         166 QDPAEVTTVEGAGPRHMVFHPNEQ--------YAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHI  237 (333)
T ss_dssp             EEEEEEECSTTCCEEEEEECTTSS--------EEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEE
T ss_pred             eeceeeeeecCCCccEEEEeccce--------eEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEE
Confidence                  112334557788888764        35556667778888876532    2222221      12345678899


Q ss_pred             cCCCCEEEEE-eCCCcEEEEecCCCee----EEEEecCCCEEEEEEcCCCCEEEEEE-CCCeEEEEEee
Q 008496          500 SPTGEYLASG-SLDKSMHIWSLKEGKI----VKTYTGNGGIFEVCWNKEGDKIAACF-ANHTVCVLDFR  562 (563)
Q Consensus       500 spdg~~lasg-s~dg~v~iw~~~~~~~----~~~~~~~~~i~~l~w~~~g~~la~~~-~~~~v~v~~~~  562 (563)
                      +||++++..+ ..++.+.+|++.....    .........+.+++|+|||++|+++. .+++|.||++.
T Consensus       238 s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id  306 (333)
T d1ri6a_         238 TPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIV  306 (333)
T ss_dssp             CTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred             ecccCceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEE
Confidence            9999877654 5678899999865432    22223334577899999999988775 45789999764

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.72  E-value=4.1e-16  Score=152.21  Aligned_cols=267  Identities=11%  Similarity=0.044  Sum_probs=176.6

Q ss_pred             EEECCCCCEEEEEe-----CCCeEEEEEcC-CceeEeeccCCCCEEEEEeCCCCCEEEEe----------eCCCcEEEEE
Q 008496          280 LDWNGEGTLLATGS-----YDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTG----------SCDKTAIVWD  343 (563)
Q Consensus       280 l~~s~~g~~l~sg~-----~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~----------s~D~~v~iwd  343 (563)
                      .+.+|||+.+++..     .++.+.+||.. +++..++..+..+  .++|+|+|++|++.          +.|+.|++||
T Consensus         7 ~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~~--~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D   84 (355)
T d2bbkh_           7 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFD   84 (355)
T ss_dssp             CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             EeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCCCC--ceEEcCCCCEEEEEeCCCccccccCCCCEEEEEE
Confidence            35689999987764     35679999976 4555666655544  79999999988764          3478999999


Q ss_pred             CCCCceeEEeeecccCe-------EEEecCCCc-eE-E-EEeCCCeEEEEEcCCCcceeeecCCCc-------ceeEEEE
Q 008496          344 VKTEEWKQQFEFHSGPT-------LDVDWRNNV-SF-A-TSSTDNMIYVCKIGENRPIKTFAGHQG-------EVNCVKW  406 (563)
Q Consensus       344 ~~~~~~~~~~~~~~~~~-------~~~~~~~~~-~~-~-~~~~d~~i~~~~~~~~~~~~~~~~h~~-------~i~~~~~  406 (563)
                      +.+++....+..+....       ..+.|..+. .+ + ..+.+..+.+|+....+.+..+..+..       ....+.+
T Consensus        85 ~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (355)
T d2bbkh_          85 PVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMH  164 (355)
T ss_dssp             TTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEE
T ss_pred             CCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEE
Confidence            99999888776544322       223444332 22 2 234567888999988887776654432       2234556


Q ss_pred             CCCCCEEEEE-eCCCcEEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEE
Q 008496          407 DPTGSLLASC-SDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLY  485 (563)
Q Consensus       407 ~~~~~~las~-s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~  485 (563)
                      +++++.++.. ..++.+.+++......     .+...+....+.+.+.         .++.++.++.+++|++..++...
T Consensus       165 ~~dg~~~~v~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~v~~~~~~~~~~  230 (355)
T d2bbkh_         165 CRDGSLAKVAFGTEGTPEITHTEVFHP-----EDEFLINHPAYSQKAG---------RLVWPTYTGKIHQIDLSSGDAKF  230 (355)
T ss_dssp             ETTSCEEEEECCSSSCCEEEECCCCSC-----TTSCBCSCCEEETTTT---------EEEEEBTTSEEEEEECTTSSCEE
T ss_pred             cCCCCEEEEEecCCCeEEEEecccccc-----eecceeeeccccCCCC---------eEEEecCCCeEEEEecCCCcEEE
Confidence            6666655433 2344445544433221     1222233344544432         56788999999999998775432


Q ss_pred             --EecCCC----------CCEEEEEEcCCCCEEEEEeCC----------CcEEEEecCCCeeEEEEecCCCEEEEEEcCC
Q 008496          486 --SLNGHR----------EPVYSLAFSPTGEYLASGSLD----------KSMHIWSLKEGKIVKTYTGNGGIFEVCWNKE  543 (563)
Q Consensus       486 --~~~~h~----------~~i~~l~~spdg~~lasgs~d----------g~v~iw~~~~~~~~~~~~~~~~i~~l~w~~~  543 (563)
                        ....+.          .....++++|++..++..+.+          ..|.+||..+++.+..+.....+.+++|+||
T Consensus       231 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~~~~~~~~a~spD  310 (355)
T d2bbkh_         231 LPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQD  310 (355)
T ss_dssp             CCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCS
T ss_pred             EeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecCCCCEEEEEEcCC
Confidence              122111          123458899999988766543          3699999999999988877777889999999


Q ss_pred             CCE--EEEEECCCeEEEEEee
Q 008496          544 GDK--IAACFANHTVCVLDFR  562 (563)
Q Consensus       544 g~~--la~~~~~~~v~v~~~~  562 (563)
                      |+.  ++++..+++|.|||.+
T Consensus       311 G~~~l~v~~~~d~~i~v~D~~  331 (355)
T d2bbkh_         311 EKPLLYALSTGDKTLYIHDAE  331 (355)
T ss_dssp             SSCEEEEEETTTTEEEEEETT
T ss_pred             CCeEEEEEECCCCEEEEEECC
Confidence            983  4556678999999974

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.65  E-value=4.9e-16  Score=152.99  Aligned_cols=249  Identities=7%  Similarity=-0.037  Sum_probs=163.5

Q ss_pred             EEEECCCCCEEEEEe----------CCCeEEEEEcCC-ceeEeeccCCC-------CEEEEEeCCCCCEEEEee-CCCcE
Q 008496          279 TLDWNGEGTLLATGS----------YDGQARIWSTNG-DLKCTLSKHKG-------PIFSLKWNKKGDYLLTGS-CDKTA  339 (563)
Q Consensus       279 ~l~~s~~g~~l~sg~----------~dg~i~vw~~~~-~~~~~~~~h~~-------~V~~l~~~~~~~~l~s~s-~D~~v  339 (563)
                      .++|+|||+.|++++          .|+.|++||... +....+..+..       ....++|+|+|++|++++ .++.+
T Consensus        69 ~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v  148 (368)
T d1mdah_          69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAA  148 (368)
T ss_dssp             EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCE
T ss_pred             cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeE
Confidence            478999999988764          367899999764 44444433221       224689999999998776 57999


Q ss_pred             EEEECCCCceeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCccee------eecCCCcceeEEEECCCCCEE
Q 008496          340 IVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIK------TFAGHQGEVNCVKWDPTGSLL  413 (563)
Q Consensus       340 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~------~~~~h~~~i~~~~~~~~~~~l  413 (563)
                      .+||+.+++....+..+.....  .......++..+.|+.+.++++.......      .+..+...+..+.+.+++..+
T Consensus       149 ~~~d~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  226 (368)
T d1mdah_         149 AGLSVPGASDDQLTKSASCFHI--HPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLV  226 (368)
T ss_dssp             EEEEETTTEEEEEEECSSCCCC--EEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEE
T ss_pred             EEEECCCCcEeEEeeccCcceE--ccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEE
Confidence            9999999988887765543321  22334567777888888888876543221      223445556678888888776


Q ss_pred             EEEeCCCcEEEEeCCCCceeee--ecccC----------CCEEEEEEccCCCCCCCCCCcEEEEEEeCC--------CeE
Q 008496          414 ASCSDDVTAKIWNMKQDKYVHD--LREHS----------KEIYTIRWSPTGSGTNNPNQQLILASASFD--------STV  473 (563)
Q Consensus       414 as~s~dg~i~iwd~~~~~~~~~--~~~~~----------~~i~~~~~~p~~~~~~~~~~~~~l~s~s~d--------g~i  473 (563)
                      .+.  .+.+.++++........  ...+.          .....++++|++.        .+++....+        ..|
T Consensus       227 ~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~--------~~~v~~~~~~~~~~~~~~~v  296 (368)
T d1mdah_         227 WAV--ASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTD--------GIMILTVEHSRSCLAAAENT  296 (368)
T ss_dssp             ECB--SSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTT--------EEEEEEEECSSCTTSCEEEE
T ss_pred             Eec--CCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCC--------EEEEEecCCCceeecCCceE
Confidence            554  44566666554433211  11111          1112345556543        222222111        359


Q ss_pred             EEEeCCCCeEEEEecCCCCCEEEEEEcCCCC--EEEEEeCCCcEEEEecCCCeeEEEEecCCCEEEEEE
Q 008496          474 KLWDVELGKLLYSLNGHREPVYSLAFSPTGE--YLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCW  540 (563)
Q Consensus       474 ~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~--~lasgs~dg~v~iw~~~~~~~~~~~~~~~~i~~l~w  540 (563)
                      .+||..+++.+..+. +...+.+++|||||+  .+++++.|+.|+|||..+|+.++++........|+.
T Consensus       297 ~v~D~~t~~~~~~~~-~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~~g~~P~~l~~  364 (368)
T d1mdah_         297 SSVTASVGQTSGPIS-NGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKGPESLSV  364 (368)
T ss_dssp             EEEESSSCCEEECCE-EEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSCCCEEEC
T ss_pred             EEEECCCCcEeEEec-CCCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEECCCCCCEEEE
Confidence            999999999887776 345688999999997  356777899999999999999998875544444443

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.57  E-value=2.8e-13  Score=137.54  Aligned_cols=292  Identities=14%  Similarity=0.146  Sum_probs=161.3

Q ss_pred             EecCCCCceEEEEECCCCCEEEEeeC---------CCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEE
Q 008496          210 ILEGHTSEVCACAWSPAGSLLASGSG---------DSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTL  280 (563)
Q Consensus       210 ~l~~h~~~V~~~~~sp~~~~latgs~---------D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l  280 (563)
                      .+..|...|.+.+|||||++||.++.         ++.+.|||+.++....                  ...+...+..+
T Consensus        56 ~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~~~------------------l~~~~~~~~~~  117 (470)
T d2bgra1          56 TFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLIT------------------EERIPNNTQWV  117 (470)
T ss_dssp             TTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECC------------------SSCCCTTEEEE
T ss_pred             hhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCcccc------------------cccCCcccccc
Confidence            34566788999999999999998753         5678899988654211                  11234568899


Q ss_pred             EECCCCCEEEEEeCCCeEEEEEcCCceeEee-c-c-----------------CCCCEEEEEeCCCCCEEEEeeCCCc-EE
Q 008496          281 DWNGEGTLLATGSYDGQARIWSTNGDLKCTL-S-K-----------------HKGPIFSLKWNKKGDYLLTGSCDKT-AI  340 (563)
Q Consensus       281 ~~s~~g~~l~sg~~dg~i~vw~~~~~~~~~~-~-~-----------------h~~~V~~l~~~~~~~~l~s~s~D~~-v~  340 (563)
                      .|||||++||.. .++.+++|+..+.....+ . +                 +.+....+.|+|+|++|+....|.+ +.
T Consensus       118 ~~SPDG~~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~~~v~  196 (470)
T d2bgra1         118 TWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVP  196 (470)
T ss_dssp             EECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCC
T ss_pred             ccccCcceeeEe-ecccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCccceeEecCCcCc
Confidence            999999999985 567899998765432222 1 1                 1223456789999999999877644 44


Q ss_pred             EEECC---CC---c-eeEEe-----------------eeccc----------------------CeEEEecCCCceEEEE
Q 008496          341 VWDVK---TE---E-WKQQF-----------------EFHSG----------------------PTLDVDWRNNVSFATS  374 (563)
Q Consensus       341 iwd~~---~~---~-~~~~~-----------------~~~~~----------------------~~~~~~~~~~~~~~~~  374 (563)
                      .|.+.   ..   . ....+                 .....                      .+..+.|..+..+...
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~  276 (470)
T d2bgra1         197 LIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQ  276 (470)
T ss_dssp             EEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEEGGGCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEE
T ss_pred             eEEEEeeccCCCCCCeeeeeccccccccCCcceEEEEECCCcceeeeccccccCCccccCCCCceEEEEEEcCCCceeEE
Confidence            44321   00   0 00000                 00000                      0112333332222111


Q ss_pred             --e-CCC--eEEEEEc--CCCcceeee-------------cCCCcceeEEEECCCC--CEEEEEeCCCcEEEEe--CCCC
Q 008496          375 --S-TDN--MIYVCKI--GENRPIKTF-------------AGHQGEVNCVKWDPTG--SLLASCSDDVTAKIWN--MKQD  430 (563)
Q Consensus       375 --~-~d~--~i~~~~~--~~~~~~~~~-------------~~h~~~i~~~~~~~~~--~~las~s~dg~i~iwd--~~~~  430 (563)
                        . ..+  .+.+|..  .++......             ..|...  ...|.+++  .+++....||..+||.  ...+
T Consensus       277 ~~~r~~~~~~~~~~~~d~~tg~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~s~~dg~~~ly~~~~~g~  354 (470)
T d2bgra1         277 WLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPS--EPHFTLDGNSFYKIISNEEGYRHICYFQIDKK  354 (470)
T ss_dssp             EEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCC--CCEECTTSSEEEEEEECTTSCEEEEEEETTCS
T ss_pred             EeeccCCceEEEEEEecCCCCcEEEEEEEeeeeeeccceeecccCC--CceeeecCCCcEEEEeccCcCceeEEEeccCC
Confidence              1 111  1223332  222211110             111112  22344443  3456677788766664  4443


Q ss_pred             ceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCC----eEEEE--eCCCCeEEEEe----cCCCCCEEEEEEc
Q 008496          431 KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDS----TVKLW--DVELGKLLYSL----NGHREPVYSLAFS  500 (563)
Q Consensus       431 ~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg----~i~iw--d~~~~~~~~~~----~~h~~~i~~l~~s  500 (563)
                      . ...+..+...|..+ +++++.        .+++++..++    .-.||  ++..+.....+    .+|...+.+++||
T Consensus       355 ~-~~~lt~g~~~v~~~-~~~d~~--------~iyf~a~~~~~~p~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~s~~fS  424 (470)
T d2bgra1         355 D-CTFITKGTWEVIGI-EALTSD--------YLYYISNEYKGMPGGRNLYKIQLSDYTKVTCLSCELNPERCQYYSVSFS  424 (470)
T ss_dssp             C-CEESCCSSSCEEEE-EEECSS--------EEEEEESCGGGCTTCBEEEEEETTCTTCEEESSTTTSTTTBCBEEEEEC
T ss_pred             c-eeeeccCCeeEEEE-EEECCC--------EEEEEEecCCCCcceEEEEEEECCCCCceeEecccccCCCCCEEEEEEC
Confidence            3 33444455566665 334332        2334443332    12344  34433333333    3577889999999


Q ss_pred             CCCCEEE---EEeCCCcEEEEecCCCeeEEEEecC
Q 008496          501 PTGEYLA---SGSLDKSMHIWSLKEGKIVKTYTGN  532 (563)
Q Consensus       501 pdg~~la---sgs~dg~v~iw~~~~~~~~~~~~~~  532 (563)
                      |||+|++   +|...-.+.+|+..+|+.++.+..+
T Consensus       425 pdgky~~~~~s~~~~P~~~l~~~~~g~~v~~le~n  459 (470)
T d2bgra1         425 KEAKYYQLRCSGPGLPLYTLHSSVNDKGLRVLEDN  459 (470)
T ss_dssp             TTSSEEEEEECSBSSCEEEEEETTTTEEEEEEECC
T ss_pred             CCCCEEEEEecCCCCCeEEEEECCCCCEEEEEecc
Confidence            9999977   3334456999999999999988754

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.45  E-value=1e-11  Score=125.86  Aligned_cols=118  Identities=12%  Similarity=0.116  Sum_probs=91.3

Q ss_pred             EEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEEeC-----
Q 008496          220 ACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSY-----  294 (563)
Q Consensus       220 ~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~-----  294 (563)
                      .+.|.+++.++..  .|+.+.+|++.++...           .+.. ......+...|.++.|||||++|+.++.     
T Consensus        21 ~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~-----------~~~~-~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~   86 (470)
T d2bgra1          21 SLRWISDHEYLYK--QENNILVFNAEYGNSS-----------VFLE-NSTFDEFGHSINDYSISPDGQFILLEYNYVKQW   86 (470)
T ss_dssp             CCEECSSSEEEEE--SSSCEEEEETTTCCEE-----------EEEC-TTTTTTSSSCCCEEEECTTSSEEEEEEEEEECS
T ss_pred             CCEeCCCCEEEEE--cCCcEEEEECCCCCEE-----------EEEc-hhhhhhccCccceeEECCCCCEEEEEECCccee
Confidence            4679999988764  5788999999876521           0100 1112234467999999999999998853     


Q ss_pred             ----CCeEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEE
Q 008496          295 ----DGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQ  352 (563)
Q Consensus       295 ----dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~  352 (563)
                          ++.+.|||..+.....+..|...+..+.|+|+|++++.. .++.+.+|+..++...+.
T Consensus        87 r~s~~~~~~l~d~~~~~~~~l~~~~~~~~~~~~SPDG~~ia~~-~~~~l~~~~~~~g~~~~~  147 (470)
T d2bgra1          87 RHSYTASYDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRI  147 (470)
T ss_dssp             SSCEEEEEEEEETTTTEECCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEEC
T ss_pred             eeccCceEEEEECCCCcccccccCCccccccccccCcceeeEe-ecccceEEECCCCceeee
Confidence                578899999988888888999999999999999999985 578999999988875543

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.42  E-value=5.1e-12  Score=123.63  Aligned_cols=268  Identities=7%  Similarity=-0.085  Sum_probs=164.3

Q ss_pred             EEEECCCCCEEE---EEeCCCe--EEEEEcC-CceeEeeccCCCCEEEEEeCCCCCEEEEee----------CCCcEEEE
Q 008496          279 TLDWNGEGTLLA---TGSYDGQ--ARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGS----------CDKTAIVW  342 (563)
Q Consensus       279 ~l~~s~~g~~l~---sg~~dg~--i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s----------~D~~v~iw  342 (563)
                      .++..++++...   .+..+|.  +.+||.. ++....+..+..+  .+.|+|+|++|++.+          .|++|.+|
T Consensus        24 ~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~  101 (368)
T d1mdah_          24 DHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVF  101 (368)
T ss_dssp             CCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEE
T ss_pred             ccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEeCCCCC--cceECCCCCEEEEEcccCccccccccCCeEEEE
Confidence            334466776432   2345555  5555755 3455555555555  588999999888754          47789999


Q ss_pred             ECCCCceeEEeeecccC-------eEEEecCCCc--eEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEE
Q 008496          343 DVKTEEWKQQFEFHSGP-------TLDVDWRNNV--SFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLL  413 (563)
Q Consensus       343 d~~~~~~~~~~~~~~~~-------~~~~~~~~~~--~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l  413 (563)
                      |..+++....+..+...       ...+.|..+.  .+++...++.+.+|++...+.+..+..+.......   .....+
T Consensus       102 D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~---~~~~~~  178 (368)
T d1mdah_         102 DPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHP---GAAATH  178 (368)
T ss_dssp             CTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCEE---EETTEE
T ss_pred             ECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceEcc---CCCceE
Confidence            99999988877654322       1234454433  33444578999999999988887776554332111   123345


Q ss_pred             EEEeCCCcEEEEeCCCCceee------eecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEe
Q 008496          414 ASCSDDVTAKIWNMKQDKYVH------DLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSL  487 (563)
Q Consensus       414 as~s~dg~i~iwd~~~~~~~~------~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~  487 (563)
                      +..+.||++.+|++.......      .+..+...+....+.+++.         .+.  +..+.+.+++...+......
T Consensus       179 v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~---------~~~--~~~~~v~~~~~~~~~~~~~~  247 (368)
T d1mdah_         179 YLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGM---------LVW--AVASSILQGDIPAAGATMKA  247 (368)
T ss_dssp             ECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTE---------EEE--CBSSCCEEEECCSSCCEEEC
T ss_pred             EEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcE---------EEE--ecCCCEEEEeecCCceEEEe
Confidence            556667777777655433211      1122333344455555542         232  33456666666554433221


Q ss_pred             --cCCC----------CCEEEEEEcCCCCEEEEEeCC---------CcEEEEecCCCeeEEEEecCCCEEEEEEcCCCCE
Q 008496          488 --NGHR----------EPVYSLAFSPTGEYLASGSLD---------KSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDK  546 (563)
Q Consensus       488 --~~h~----------~~i~~l~~spdg~~lasgs~d---------g~v~iw~~~~~~~~~~~~~~~~i~~l~w~~~g~~  546 (563)
                        ..+.          .....++++|++..++....+         ..|.+||..+++.+.++.....+.+++|+|||+.
T Consensus       248 ~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~a~spDG~~  327 (368)
T d1mdah_         248 AIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGAS  327 (368)
T ss_dssp             CCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSC
T ss_pred             ecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEecCCCceeEEEECCCCCE
Confidence              1110          112357899998877654322         3599999999999888776667889999999973


Q ss_pred             --EEEEECCCeEEEEEee
Q 008496          547 --IAACFANHTVCVLDFR  562 (563)
Q Consensus       547 --la~~~~~~~v~v~~~~  562 (563)
                        ++++..+++|.|||..
T Consensus       328 ~ly~s~~~~~~v~v~D~~  345 (368)
T d1mdah_         328 DNYANSAGTEVLDIYDAA  345 (368)
T ss_dssp             EEEEEETTTTEEEEEESS
T ss_pred             EEEEEeCCCCeEEEEECC
Confidence              3455668899999964

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.32  E-value=2.5e-10  Score=111.60  Aligned_cols=252  Identities=10%  Similarity=0.110  Sum_probs=154.1

Q ss_pred             EEEEeCCCeEEEEEcC-CceeEeec------------------------------cCCCCEEEEEeCCCCCEEEEe-eCC
Q 008496          289 LATGSYDGQARIWSTN-GDLKCTLS------------------------------KHKGPIFSLKWNKKGDYLLTG-SCD  336 (563)
Q Consensus       289 l~sg~~dg~i~vw~~~-~~~~~~~~------------------------------~h~~~V~~l~~~~~~~~l~s~-s~D  336 (563)
                      ++||+.+|.|++|++. ++...++.                              .|..........|||++|+.. ..+
T Consensus        14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~~   93 (441)
T d1qnia2          14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKAN   93 (441)
T ss_dssp             EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETTT
T ss_pred             EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCCC
Confidence            6788889999999964 33333221                              122334455567999998655 568


Q ss_pred             CcEEEEECCCCceeEEeeec-ccCeEEEecCC--CceEEEEeCCCeE------------------EEEEcCCCcceeeec
Q 008496          337 KTAIVWDVKTEEWKQQFEFH-SGPTLDVDWRN--NVSFATSSTDNMI------------------YVCKIGENRPIKTFA  395 (563)
Q Consensus       337 ~~v~iwd~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~d~~i------------------~~~~~~~~~~~~~~~  395 (563)
                      ++|.++|+.+++..+.+... ...+..+.+..  +..++++.....+                  ..++..+........
T Consensus        94 ~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~  173 (441)
T d1qnia2          94 TRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVI  173 (441)
T ss_dssp             TEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEEE
T ss_pred             CEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeEEEe
Confidence            89999999999988876643 33455566543  3335555443333                  234544444433333


Q ss_pred             CCCcceeEEEECCCCCEEEEEeCCC-----------------------------------------cEEEEeCCCCceee
Q 008496          396 GHQGEVNCVKWDPTGSLLASCSDDV-----------------------------------------TAKIWNMKQDKYVH  434 (563)
Q Consensus       396 ~h~~~i~~~~~~~~~~~las~s~dg-----------------------------------------~i~iwd~~~~~~~~  434 (563)
                      .. +....++++|+|+++++.+.+.                                         .+.|++......+.
T Consensus       174 v~-~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~v~~  252 (441)
T d1qnia2         174 VD-GNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESEFTR  252 (441)
T ss_dssp             ES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSCSSEE
T ss_pred             cC-CCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccCCceEE
Confidence            22 3467899999999987776542                                         22333333333333


Q ss_pred             eecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCe-----------EEEEecCCCCCEEEEEEcCCC
Q 008496          435 DLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK-----------LLYSLNGHREPVYSLAFSPTG  503 (563)
Q Consensus       435 ~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~-----------~~~~~~~h~~~i~~l~~spdg  503 (563)
                      .+..... ...+.++|+|        +.+++++..+++|.+||+++..           ++..-....-.....+|+++|
T Consensus       253 ~IPvgks-PhGv~vSPDG--------kyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g  323 (441)
T d1qnia2         253 YIPVPKN-PHGLNTSPDG--------KYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRG  323 (441)
T ss_dssp             EECCBSS-CCCEEECTTS--------CEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSS
T ss_pred             EEeCCCC-ccCceECCCC--------CEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCcccceecCCc
Confidence            3333222 2445666665        4678889999999999986421           111111111234556899999


Q ss_pred             CEEEEEeCCCcEEEEecCC----------CeeEEEEecCCC------EEEEEEcCCCCEEEEE
Q 008496          504 EYLASGSLDKSMHIWSLKE----------GKIVKTYTGNGG------IFEVCWNKEGDKIAAC  550 (563)
Q Consensus       504 ~~lasgs~dg~v~iw~~~~----------~~~~~~~~~~~~------i~~l~w~~~g~~la~~  550 (563)
                      ..+.+...|.+|..|++..          ..++..+..+-.      +.+.+++|||++|+++
T Consensus       324 ~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~  386 (441)
T d1qnia2         324 NAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVL  386 (441)
T ss_dssp             EEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEE
T ss_pred             eEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCCcEEEec
Confidence            9999999999999999742          124444432222      2345689999999999

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.32  E-value=1.4e-12  Score=127.70  Aligned_cols=273  Identities=11%  Similarity=0.060  Sum_probs=160.8

Q ss_pred             CCCCceEEEEECCCCCEEEEe-eCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCC--EE
Q 008496          213 GHTSEVCACAWSPAGSLLASG-SGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT--LL  289 (563)
Q Consensus       213 ~h~~~V~~~~~sp~~~~latg-s~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~--~l  289 (563)
                      .|........++|||++|+.. ..++.|.++|+.+++...             ..   ..+....+..++|+|+|+  ++
T Consensus        69 ~hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~-------------ii---~iP~g~gphgi~~spdg~t~YV  132 (441)
T d1qnia2          69 CHHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDK-------------IT---HIPNVQAIHGLRLQKVPKTNYV  132 (441)
T ss_dssp             BCCCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEE-------------EE---ECTTCCCEEEEEECCSSBCCEE
T ss_pred             ccCCCcceecccCCCCEEEEEcCCCCEEEEEECCCCcEee-------------EE---ecCCCCCccceEEeccCCEEEE
Confidence            355566667788999987555 578899999998754211             00   112345688999999998  55


Q ss_pred             EEEeCCCe-----------------EEEEEcCCc-eeEeeccCCCCEEEEEeCCCCCEEEEeeCCC-cEEEEECCCCcee
Q 008496          290 ATGSYDGQ-----------------ARIWSTNGD-LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDK-TAIVWDVKTEEWK  350 (563)
Q Consensus       290 ~sg~~dg~-----------------i~vw~~~~~-~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~-~v~iwd~~~~~~~  350 (563)
                      +.++.+..                 +..+|.... ...++.. .+....+.|+|+|+++++.+.+. .+..++..+....
T Consensus       133 ~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~v-~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~  211 (441)
T d1qnia2         133 FCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVIV-DGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDR  211 (441)
T ss_dssp             EEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSB
T ss_pred             EeccCCcccccCcccccccccccceEEeecCccceeeEEEec-CCCccceEECCCCCEEEEEecCCCceEEEeccCcceE
Confidence            54444321                 233554432 2222222 23457789999999988777653 3333343333222


Q ss_pred             EEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEE-EEEeCCCcEEEEeCCC
Q 008496          351 QQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLL-ASCSDDVTAKIWNMKQ  429 (563)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l-as~s~dg~i~iwd~~~  429 (563)
                      ..+.....+ .......+..++..+.++.+.++.....+.+..+....+ ...+.++|||+++ +++..++++.|||+.+
T Consensus       212 d~i~v~n~p-~~~~~~~dGk~~~v~~~~v~vvd~~~~~~v~~~IPvgks-PhGv~vSPDGkyl~~~~~~~~tvsv~d~~k  289 (441)
T d1qnia2         212 DWVVVFNVE-RIAAAVKAGNFKTIGDSKVPVVDGRGESEFTRYIPVPKN-PHGLNTSPDGKYFIANGKLSPTVSVIAIDK  289 (441)
T ss_dssp             CEEEEEEHH-HHHHHHHTTCCBCCTTCCCCEEECSSSCSSEEEECCBSS-CCCEEECTTSCEEEEECTTSSBEEEEEGGG
T ss_pred             EEEEeCCcc-ceEEEecCCCEEEeCCCCcEEEEcccCCceEEEEeCCCC-ccCceECCCCCEEEEeCCcCCcEEEEEeeh
Confidence            111111000 000111223344445566666666666666666665444 4679999999976 5677799999999864


Q ss_pred             Ccee--------eeeccc---CCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC----------CeEEEEe-
Q 008496          430 DKYV--------HDLREH---SKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL----------GKLLYSL-  487 (563)
Q Consensus       430 ~~~~--------~~~~~~---~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~----------~~~~~~~-  487 (563)
                      ....        ..+.++   .-.....+|.+.|.         .+.+.+.|..|..|++..          ...+..+ 
T Consensus       290 ~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~---------~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~  360 (441)
T d1qnia2         290 LDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGN---------AYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLD  360 (441)
T ss_dssp             HHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSSE---------EEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEE
T ss_pred             hhhHhhccCCcceEEEeecccccCcccceecCCce---------EEEcccccceEEEeccchhhhhhccCCCceeEeccc
Confidence            2210        111111   11123346766653         678889999999999741          1233333 


Q ss_pred             ----cCCCCCEEEEEEcCCCCEEEEE---eCCC
Q 008496          488 ----NGHREPVYSLAFSPTGEYLASG---SLDK  513 (563)
Q Consensus       488 ----~~h~~~i~~l~~spdg~~lasg---s~dg  513 (563)
                          .+|...+.+.+|+|||+||+++   |.|+
T Consensus       361 v~y~~GH~~~~~~~t~~pdGk~l~s~~k~s~dr  393 (441)
T d1qnia2         361 VQYQPGHNHASLTESRDADGKWLVVLSKFSKDR  393 (441)
T ss_dssp             CSSCEEEEEETTTTSTTCCCCEEEEEESCCGGG
T ss_pred             cccCCCCCccccccccCCCCcEEEecCcccccc
Confidence                4676667777899999999999   5554

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.19  E-value=3.5e-08  Score=90.87  Aligned_cols=234  Identities=12%  Similarity=0.157  Sum_probs=141.4

Q ss_pred             eEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEEEeeCCC---cEEEEECCCCceeEEeeecccCeEEEecCCCc-eEE
Q 008496          297 QARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDK---TAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNV-SFA  372 (563)
Q Consensus       297 ~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~---~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  372 (563)
                      .|.|-|.+|.....+..+...+.+.+|||||++|+-.....   .+.+.+..++... .+..+........|..+. .++
T Consensus        20 ~l~i~d~dG~~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~spdg~~i~   98 (269)
T d2hqsa1          20 ELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLA   98 (269)
T ss_dssp             EEEEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEE
T ss_pred             EEEEEcCCCCCcEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCcee-EEeeeecccccceecCCCCeee
Confidence            57777888877777777788899999999999998665433   3666666655543 333444555566665443 233


Q ss_pred             EE-eCCCe--EEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEE-EeCCCcEEE--EeCCCCceeeeecccCCCEEEE
Q 008496          373 TS-STDNM--IYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLAS-CSDDVTAKI--WNMKQDKYVHDLREHSKEIYTI  446 (563)
Q Consensus       373 ~~-~~d~~--i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las-~s~dg~i~i--wd~~~~~~~~~~~~~~~~i~~~  446 (563)
                      .. ..++.  +..+........ ....+........+++++..++. ...++...|  .++..... ..+..+.......
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~-~~~~~~~~~~~~~  176 (269)
T d2hqsa1          99 FALSKTGSLNLYVMDLASGQIR-QVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDA  176 (269)
T ss_dssp             EEECTTSSCEEEEEETTTCCEE-ECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC-EECCCSSSEEEEE
T ss_pred             EeeecCCccceeecccccccce-eeeeccccccccccccccccceecccccCCceEeeeecccccc-eeeeccccccccc
Confidence            22 22222  222222222222 22223334445667777776544 444555444  45544432 2334455667788


Q ss_pred             EEccCCCCCCCCCCcEEEEEEeCCCeEEEE--eCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeC---CCcEEEEecC
Q 008496          447 RWSPTGSGTNNPNQQLILASASFDSTVKLW--DVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSL---DKSMHIWSLK  521 (563)
Q Consensus       447 ~~~p~~~~~~~~~~~~~l~s~s~dg~i~iw--d~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~---dg~v~iw~~~  521 (563)
                      .|+|++.        .++.+....+...+|  +...+..  .+..+........|||||++||-.+.   ...|.++++.
T Consensus       177 ~~spdg~--------~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~d  246 (269)
T d2hqsa1         177 DVSSDGK--------FMVMVSSNGGQQHIAKQDLATGGV--QVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD  246 (269)
T ss_dssp             EECTTSS--------EEEEEEECSSCEEEEEEETTTCCE--EECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETT
T ss_pred             ccccccc--------eeEEEeecCCceeeeEeecccccc--eEeecCccccceEECCCCCEEEEEEcCCCCcEEEEEECC
Confidence            9999875        345555555555555  4444433  33345556788899999999875443   3478999998


Q ss_pred             CCeeEEEEecCCCEEEEEEcCC
Q 008496          522 EGKIVKTYTGNGGIFEVCWNKE  543 (563)
Q Consensus       522 ~~~~~~~~~~~~~i~~l~w~~~  543 (563)
                      .+...+.....+.+...+|+|-
T Consensus       247 g~~~~~lt~~~g~~~~p~WSP~  268 (269)
T d2hqsa1         247 GRFKARLPATDGQVKFPAWSPY  268 (269)
T ss_dssp             SCCEEECCCSSSEEEEEEECCC
T ss_pred             CCCEEEEeCCCCcEEeEEeCCC
Confidence            7776555555667888999983

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.12  E-value=8.3e-08  Score=89.05  Aligned_cols=230  Identities=14%  Similarity=0.224  Sum_probs=155.5

Q ss_pred             EEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeeccc------CeEEEec--CCCceEE-EEeCCCeEEEEEcCCC
Q 008496          318 IFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSG------PTLDVDW--RNNVSFA-TSSTDNMIYVCKIGEN  388 (563)
Q Consensus       318 V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~------~~~~~~~--~~~~~~~-~~~~d~~i~~~~~~~~  388 (563)
                      ...|+++++|+.+++-...+.|++||.. +.++..+.....      ....+.+  .....++ ..+.++.|..++.. +
T Consensus        25 P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-g  102 (279)
T d1q7fa_          25 PSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQY-G  102 (279)
T ss_dssp             EEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTT-S
T ss_pred             ccEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCcccccccccc-c
Confidence            4789999999988887778899999964 566655532211      1122222  2223333 33444566555543 3


Q ss_pred             cceeeec-CCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeee--cccCCCEEEEEEccCCCCCCCCCCcEEEE
Q 008496          389 RPIKTFA-GHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDL--REHSKEIYTIRWSPTGSGTNNPNQQLILA  465 (563)
Q Consensus       389 ~~~~~~~-~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~--~~~~~~i~~~~~~p~~~~~~~~~~~~~l~  465 (563)
                      .....+. ........+++.++|.++++....+.+.+++... +.+..+  ..+......+++.+++.         +++
T Consensus       103 ~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g-~~~~~~g~~~~~~~~~~i~~d~~g~---------i~v  172 (279)
T d1q7fa_         103 QFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNG-NVLHKFGCSKHLEFPNGVVVNDKQE---------IFI  172 (279)
T ss_dssp             CEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTS-CEEEEEECTTTCSSEEEEEECSSSE---------EEE
T ss_pred             cceeecCCCcccccceeccccCCcEEEEeeccceeeEeccCC-ceeecccccccccccceeeecccee---------EEe
Confidence            3344442 2345577899999999988888888888888653 444443  33455677788777653         667


Q ss_pred             EEeCCCeEEEEeCCCCeEEEEec--CCCCCEEEEEEcCCCCEEEEEeC-CCcEEEEecCCCeeEEEEecC---CCEEEEE
Q 008496          466 SASFDSTVKLWDVELGKLLYSLN--GHREPVYSLAFSPTGEYLASGSL-DKSMHIWSLKEGKIVKTYTGN---GGIFEVC  539 (563)
Q Consensus       466 s~s~dg~i~iwd~~~~~~~~~~~--~h~~~i~~l~~spdg~~lasgs~-dg~v~iw~~~~~~~~~~~~~~---~~i~~l~  539 (563)
                      +....+.|++||.. ++.+.++.  +.......|++.|+|+.+++-+. ++.|.+|+ .+|+.+.++...   .....|+
T Consensus       173 ~d~~~~~V~~~d~~-G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~-~~G~~~~~~~~~~~~~~p~~va  250 (279)
T d1q7fa_         173 SDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFT-QDGQLISALESKVKHAQCFDVA  250 (279)
T ss_dssp             EEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEEC-TTSCEEEEEEESSCCSCEEEEE
T ss_pred             eeccccceeeeecC-CceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEEC-CCCCEEEEEeCCCCCCCEeEEE
Confidence            77888999999975 67777663  34445789999999998877554 45799998 568888877543   3478999


Q ss_pred             EcCCCCEEEEEECCCeEEEEEee
Q 008496          540 WNKEGDKIAACFANHTVCVLDFR  562 (563)
Q Consensus       540 w~~~g~~la~~~~~~~v~v~~~~  562 (563)
                      .++||..++ +..|.+|.||.++
T Consensus       251 v~~dG~l~V-~~~n~~v~~fr~~  272 (279)
T d1q7fa_         251 LMDDGSVVL-ASKDYRLYIYRYV  272 (279)
T ss_dssp             EETTTEEEE-EETTTEEEEEECS
T ss_pred             EeCCCcEEE-EeCCCeEEEEEee
Confidence            999997555 5578999999875

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.11  E-value=8.8e-09  Score=97.10  Aligned_cols=228  Identities=12%  Similarity=0.050  Sum_probs=153.0

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCeEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEee
Q 008496          275 KDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFE  354 (563)
Q Consensus       275 ~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~  354 (563)
                      ..+..++++|||+++++...++.|+.|+.++... .+......+.+++|.++|+.+++...++.+.+|+.....-..   
T Consensus        28 ~~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~~~-~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~---  103 (302)
T d2p4oa1          28 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQQ-IHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTV---  103 (302)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTCCEE-EEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCE---
T ss_pred             CCcCCEEECCCCCEEEEeCCCCEEEEEeCCCCEE-EEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccce---
Confidence            3578899999999999999999999999887644 445566788999999999988888888888777754321100   


Q ss_pred             ecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceee
Q 008496          355 FHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVH  434 (563)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~  434 (563)
                                               ..+.+.          ......+.+++.++++++++.+.++.+..++...+....
T Consensus       104 -------------------------~~~~~~----------~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~  148 (302)
T d2p4oa1         104 -------------------------ETLLTL----------PDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSI  148 (302)
T ss_dssp             -------------------------EEEEEC----------TTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             -------------------------eecccc----------CCccccceeEEccCCCEEeeccccccceeeeccCCccee
Confidence                                     000010          122346788999999998888888888888877654321


Q ss_pred             eec----------ccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEE---EEecCCCCCEEEEEEcC
Q 008496          435 DLR----------EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLL---YSLNGHREPVYSLAFSP  501 (563)
Q Consensus       435 ~~~----------~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~---~~~~~h~~~i~~l~~sp  501 (563)
                      .+.          ........+.+...          .++.+.+..+.|..+++......   .... .......++|++
T Consensus       149 ~~~~~~~~~~~~~~~~~~~ngi~~~~~----------~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~pdgia~d~  217 (302)
T d2p4oa1         149 WLEHPMLARSNSESVFPAANGLKRFGN----------FLYVSNTEKMLLLRIPVDSTDKPGEPEIFV-EQTNIDDFAFDV  217 (302)
T ss_dssp             EEECGGGSCSSTTCCSCSEEEEEEETT----------EEEEEETTTTEEEEEEBCTTSCBCCCEEEE-ESCCCSSEEEBT
T ss_pred             EecCCccceeeccCcccccccccccCC----------ceeeecCCCCeEEecccccccccccccccc-CCCCCcceEECC
Confidence            111          11112344444321          35667778888888886543211   1111 122346799999


Q ss_pred             CCCEEEEEeCCCcEEEEecCCCeeEEEEe---cCCCEEEEEE---cCCCCEEEEEECC
Q 008496          502 TGEYLASGSLDKSMHIWSLKEGKIVKTYT---GNGGIFEVCW---NKEGDKIAACFAN  553 (563)
Q Consensus       502 dg~~lasgs~dg~v~iw~~~~~~~~~~~~---~~~~i~~l~w---~~~g~~la~~~~~  553 (563)
                      +|+++++...+++|..++.. |+......   +-...+.++|   ++|++.|.++...
T Consensus       218 dG~l~va~~~~~~V~~i~p~-G~~~~~~~~~~~~~~pt~vafg~~~~D~~~Lyvtt~~  274 (302)
T d2p4oa1         218 EGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG  274 (302)
T ss_dssp             TCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred             CCCEEEEEcCCCcEEEECCC-CCEEEEEecCCCCCCceEEEEcCCCCCCCEEEEECCC
Confidence            99988888889999999875 44333332   2245789999   7788988877554

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.08  E-value=1.4e-07  Score=91.09  Aligned_cols=240  Identities=14%  Similarity=0.124  Sum_probs=136.2

Q ss_pred             CCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCC-CceeEEee-ecccCeEEEecCCCc--eEEEEe--CCCeEEEEEcCC
Q 008496          314 HKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKT-EEWKQQFE-FHSGPTLDVDWRNNV--SFATSS--TDNMIYVCKIGE  387 (563)
Q Consensus       314 h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~-~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~--~d~~i~~~~~~~  387 (563)
                      ...++..|+|+|++++|++++. +.+..|.+.. +....... ........+....+.  .|++..  ..+.+..+.+..
T Consensus        38 ~~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~  116 (365)
T d1jofa_          38 QDEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYK  116 (365)
T ss_dssp             TTCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESS
T ss_pred             CCCCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecCCCCcEEEEECCCCCEEEEEEecCCCCEEEEeEccC
Confidence            3445567999999999988765 4567776543 22222111 111112222222222  233322  234444443321


Q ss_pred             Cc----------------ceee-ecCCCcceeEEEECCCCCEEEEEeC-CCcEEEEeCCCCcee---eee--cccCCCEE
Q 008496          388 NR----------------PIKT-FAGHQGEVNCVKWDPTGSLLASCSD-DVTAKIWNMKQDKYV---HDL--REHSKEIY  444 (563)
Q Consensus       388 ~~----------------~~~~-~~~h~~~i~~~~~~~~~~~las~s~-dg~i~iwd~~~~~~~---~~~--~~~~~~i~  444 (563)
                      ..                +... -......+.++.|+|+|+++++++. ...|.+|+......+   ..+  ........
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr  196 (365)
T d1jofa_         117 FAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPR  196 (365)
T ss_dssp             SCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEE
T ss_pred             CCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceE
Confidence            10                0110 0111224679999999998877764 457888875533221   111  12345678


Q ss_pred             EEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeE--EEEec-----------------CCCCCEEEEEEcCCCCE
Q 008496          445 TIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKL--LYSLN-----------------GHREPVYSLAFSPTGEY  505 (563)
Q Consensus       445 ~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~--~~~~~-----------------~h~~~i~~l~~spdg~~  505 (563)
                      .+.|+|++.        .+.++.-.+++|.+|++..++.  +....                 .+......+.++|||++
T Consensus       197 ~i~f~pdg~--------~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~  268 (365)
T d1jofa_         197 WVAMHPTGN--------YLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKY  268 (365)
T ss_dssp             EEEECTTSS--------EEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSE
T ss_pred             EEEECCCCc--------eEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCE
Confidence            899999875        4567778899999999865432  22111                 01123567899999999


Q ss_pred             EEEEeC-C-----CcEEEEecCCC-eeEEEE------ecCCCEEEEEEcC-CCCEEEEE-ECCCeEEEEEee
Q 008496          506 LASGSL-D-----KSMHIWSLKEG-KIVKTY------TGNGGIFEVCWNK-EGDKIAAC-FANHTVCVLDFR  562 (563)
Q Consensus       506 lasgs~-d-----g~v~iw~~~~~-~~~~~~------~~~~~i~~l~w~~-~g~~la~~-~~~~~v~v~~~~  562 (563)
                      |+++.. +     +.|..|++... .+....      ........++++| +|++|+++ ..++.|.||+++
T Consensus       269 lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~  340 (365)
T d1jofa_         269 MFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWK  340 (365)
T ss_dssp             EEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEE
T ss_pred             EEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEe
Confidence            987642 2     24777777543 222111      1123456789998 89988777 567899999864

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.00  E-value=1.7e-07  Score=85.96  Aligned_cols=234  Identities=7%  Similarity=-0.020  Sum_probs=138.1

Q ss_pred             CCEEEEEeCCCCCEEEEe-eCCCcEEEEECCCCceeEEeeecccCeEEEecCC-CceEEEEeCCCeEEEEEcCCCcceee
Q 008496          316 GPIFSLKWNKKGDYLLTG-SCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN-NVSFATSSTDNMIYVCKIGENRPIKT  393 (563)
Q Consensus       316 ~~V~~l~~~~~~~~l~s~-s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~i~~~~~~~~~~~~~  393 (563)
                      ..-.+|++.++|+..++. +..+.+..++...................+.+.. ...+++....+.+++++......+..
T Consensus        14 ~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~~   93 (260)
T d1rwia_          14 LSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLP   93 (260)
T ss_dssp             CCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECC
T ss_pred             CCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcCCCCEEEeeeeeceeeeeeeccceeeee
Confidence            345789999999966654 4556777776544322111111011122233322 23344444444444433333322222


Q ss_pred             ecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeE
Q 008496          394 FAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTV  473 (563)
Q Consensus       394 ~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i  473 (563)
                      .. ......+++++++++++++-..+..+..++............-......+++.|++.         ++++...++.|
T Consensus        94 ~~-~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~---------~~v~~~~~~~i  163 (260)
T d1rwia_          94 FD-GLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGN---------VYVTDTDNNRV  163 (260)
T ss_dssp             CC-SCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCC---------EEEEEGGGTEE
T ss_pred             ee-eeeecccccccccceeEeeccccccccccccccceeeeeeecccCCcceeeecCCCC---------Eeeeccccccc
Confidence            22 234578999999999888776677777777654432221111122345777777654         56667778889


Q ss_pred             EEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEecC--CCEEEEEEcCCCCEEEEEE
Q 008496          474 KLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGN--GGIFEVCWNKEGDKIAACF  551 (563)
Q Consensus       474 ~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~~--~~i~~l~w~~~g~~la~~~  551 (563)
                      ..+|...................|+++++|+++++....+.|..++..... ...+...  .....|+++++|+.+++-.
T Consensus       164 ~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~-~~~~~~~~~~~P~~i~~d~~g~l~vad~  242 (260)
T d1rwia_         164 VKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTT-STVLPFTGLNTPLAVAVDSDRTVYVADR  242 (260)
T ss_dssp             EEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSC-CEECCCCSCCCEEEEEECTTCCEEEEEG
T ss_pred             cccccccceeeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCe-EEEEccCCCCCeEEEEEeCCCCEEEEEC
Confidence            999987554433222334456899999999998888888889888765432 2232222  3468999999999888877


Q ss_pred             CCCeEEEEE
Q 008496          552 ANHTVCVLD  560 (563)
Q Consensus       552 ~~~~v~v~~  560 (563)
                      .+++|..++
T Consensus       243 ~~~rI~~i~  251 (260)
T d1rwia_         243 GNDRVVKLT  251 (260)
T ss_dssp             GGTEEEEEC
T ss_pred             CCCEEEEEe
Confidence            788887664

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.00  E-value=3.3e-07  Score=85.94  Aligned_cols=215  Identities=11%  Similarity=0.049  Sum_probs=144.8

Q ss_pred             ceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEEeCCC
Q 008496          217 EVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDG  296 (563)
Q Consensus       217 ~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~dg  296 (563)
                      .+..++++|||+++++...+++|..|+... ..           ..+.       .....+.+++|+++|+++++...++
T Consensus        29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g-~~-----------~~~~-------~~~~~~~gla~~~dG~l~v~~~~~~   89 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTNHEVGEIVSITPDG-NQ-----------QIHA-------TVEGKVSGLAFTSNGDLVATGWNAD   89 (302)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTTC-CE-----------EEEE-------ECSSEEEEEEECTTSCEEEEEECTT
T ss_pred             CcCCEEECCCCCEEEEeCCCCEEEEEeCCC-CE-----------EEEE-------cCCCCcceEEEcCCCCeEEEecCCc
Confidence            477899999999999999999888877432 11           1111       1124588999999999999988888


Q ss_pred             eEEEEEcCC---ceeEe-eccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeec----------ccCeEE
Q 008496          297 QARIWSTNG---DLKCT-LSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFH----------SGPTLD  362 (563)
Q Consensus       297 ~i~vw~~~~---~~~~~-~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~----------~~~~~~  362 (563)
                      .+..|+..+   ..... ..........+.+.++++++++.+.++.+..+|..++.........          ......
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ng  169 (302)
T d2p4oa1          90 SIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANG  169 (302)
T ss_dssp             SCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEE
T ss_pred             eEEEEEecccccceeeccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCccccccc
Confidence            888877532   22111 1223456789999999998888888899999998776533221110          012344


Q ss_pred             EecCCCceEEEEeCCCeEEEEEcCCCcceeee--cCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCce-eeeeccc
Q 008496          363 VDWRNNVSFATSSTDNMIYVCKIGENRPIKTF--AGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKY-VHDLREH  439 (563)
Q Consensus       363 ~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~--~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~-~~~~~~~  439 (563)
                      +.+..+..+++.+..+.|+.++..........  .........++++++|+++++...++.|..++...... +......
T Consensus       170 i~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G~~~~~~~~~~~  249 (302)
T d2p4oa1         170 LKRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRSTTIIAQAEQG  249 (302)
T ss_dssp             EEEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCCEEEEECGGGT
T ss_pred             ccccCCceeeecCCCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCcEEEECCCCCEEEEEecCCC
Confidence            55556667778888889998887654322111  11223456799999999988888899999998764432 2233334


Q ss_pred             CCCEEEEEEcc
Q 008496          440 SKEIYTIRWSP  450 (563)
Q Consensus       440 ~~~i~~~~~~p  450 (563)
                      ....++++|.+
T Consensus       250 ~~~pt~vafg~  260 (302)
T d2p4oa1         250 VIGSTAVAFGQ  260 (302)
T ss_dssp             CTTEEEEEECC
T ss_pred             CCCceEEEEcC
Confidence            45578899954

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.99  E-value=3.1e-07  Score=84.30  Aligned_cols=215  Identities=14%  Similarity=0.118  Sum_probs=130.5

Q ss_pred             CCeEEEEECCCCCEEEEEeCCC---eEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEEEeeC-CCcEEEE--ECCCCc
Q 008496          275 KDVTTLDWNGEGTLLATGSYDG---QARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSC-DKTAIVW--DVKTEE  348 (563)
Q Consensus       275 ~~V~~l~~s~~g~~l~sg~~dg---~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~-D~~v~iw--d~~~~~  348 (563)
                      ..+..-+|||||+.||......   .+.+.+..+.....+..+.+......|+|+|..++.... ++...++  ......
T Consensus        39 ~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~~  118 (269)
T d2hqsa1          39 QPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ  118 (269)
T ss_dssp             SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC
T ss_pred             CceeeeEECCCCCEEEEEEeeccCcceeeeecccCceeEEeeeecccccceecCCCCeeeEeeecCCccceeeccccccc
Confidence            4577889999999999765543   466667777777777788889999999999998876554 3332222  222222


Q ss_pred             eeEEeeecccCeEE-EecCCCceEEEEeCCC--eEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeC-CCcEEE
Q 008496          349 WKQQFEFHSGPTLD-VDWRNNVSFATSSTDN--MIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD-DVTAKI  424 (563)
Q Consensus       349 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~--~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~-dg~i~i  424 (563)
                      .............. ..+.....+.....++  .|+..+...... ..+..+........|+|+++.++..+. .+...+
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i  197 (269)
T d2hqsa1         119 IRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHI  197 (269)
T ss_dssp             EEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC-EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEE
T ss_pred             ceeeeeccccccccccccccccceecccccCCceEeeeecccccc-eeeecccccccccccccccceeEEEeecCCceee
Confidence            22211111111111 1222333444444444  455555544432 233445566778899999998877655 444444


Q ss_pred             E--eCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeC--CCeEEEEeCCCCeEEEEecCCCCCEEEEEEc
Q 008496          425 W--NMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASF--DSTVKLWDVELGKLLYSLNGHREPVYSLAFS  500 (563)
Q Consensus       425 w--d~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~--dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s  500 (563)
                      |  +...+..  .+..+........|+|+|.        .++.+...  ...|.++++..+.. ..+....+.+...+||
T Consensus       198 ~~~~~~~~~~--~~~~~~~~~~~p~~SPDG~--------~i~f~s~~~~~~~l~~~~~dg~~~-~~lt~~~g~~~~p~WS  266 (269)
T d2hqsa1         198 AKQDLATGGV--QVLSSTFLDETPSLAPNGT--------MVIYSSSQGMGSVLNLVSTDGRFK-ARLPATDGQVKFPAWS  266 (269)
T ss_dssp             EEEETTTCCE--EECCCSSSCEEEEECTTSS--------EEEEEEEETTEEEEEEEETTSCCE-EECCCSSSEEEEEEEC
T ss_pred             eEeecccccc--eEeecCccccceEECCCCC--------EEEEEEcCCCCcEEEEEECCCCCE-EEEeCCCCcEEeEEeC
Confidence            4  4444432  3344556677889999986        23333332  34688999986554 5566666778889999


Q ss_pred             C
Q 008496          501 P  501 (563)
Q Consensus       501 p  501 (563)
                      |
T Consensus       267 P  267 (269)
T d2hqsa1         267 P  267 (269)
T ss_dssp             C
T ss_pred             C
Confidence            8

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.97  E-value=1.6e-07  Score=85.97  Aligned_cols=235  Identities=9%  Similarity=-0.008  Sum_probs=139.2

Q ss_pred             eEEEEECCCCCEEEEE-eCCCeEEEEEcCCceeEeecc-CCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEee
Q 008496          277 VTTLDWNGEGTLLATG-SYDGQARIWSTNGDLKCTLSK-HKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFE  354 (563)
Q Consensus       277 V~~l~~s~~g~~l~sg-~~dg~i~vw~~~~~~~~~~~~-h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~  354 (563)
                      -..++++++|++.++. +..+.+..++..+.....+.. -.....+++++++|+.+++....+.+++++..+........
T Consensus        16 P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~~~~   95 (260)
T d1rwia_          16 PSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPFD   95 (260)
T ss_dssp             EEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECCCC
T ss_pred             CCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcCCCCEEEeeeeeceeeeeeeccceeeeeee
Confidence            4788999999977765 455777777765543333221 11234678899999887777666677766554444332221


Q ss_pred             ecccCeEEEecCCC-ceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCcee
Q 008496          355 FHSGPTLDVDWRNN-VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYV  433 (563)
Q Consensus       355 ~~~~~~~~~~~~~~-~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~  433 (563)
                      .. ....++.+..+ ..+++-..+..+..++..................+++++++++++++...++.|..++.......
T Consensus        96 ~~-~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~  174 (260)
T d1rwia_          96 GL-NYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQV  174 (260)
T ss_dssp             SC-CSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCEE
T ss_pred             ee-eecccccccccceeEeeccccccccccccccceeeeeeecccCCcceeeecCCCCEeeeccccccccccccccceee
Confidence            11 12334443222 23333334444444444332211111112234678999999999888888889999998765443


Q ss_pred             eeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCC
Q 008496          434 HDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDK  513 (563)
Q Consensus       434 ~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg  513 (563)
                      ............+++.+++.         ++++....+.|..++.............-.....|+++++|.++++-..++
T Consensus       175 ~~~~~~~~~p~gi~~d~~g~---------l~vsd~~~~~i~~~~~~~~~~~~~~~~~~~~P~~i~~d~~g~l~vad~~~~  245 (260)
T d1rwia_         175 VLPFTDITAPWGIAVDEAGT---------VYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGND  245 (260)
T ss_dssp             ECCCSSCCSEEEEEECTTCC---------EEEEETTTTEEEEECTTCSCCEECCCCSCCCEEEEEECTTCCEEEEEGGGT
T ss_pred             eeeccccCCCccceeeeeee---------eeeeecCCCEEEEEeCCCCeEEEEccCCCCCeEEEEEeCCCCEEEEECCCC
Confidence            32223445567888888764         566777778888887654332221122223468999999999888766777


Q ss_pred             cEEEEecC
Q 008496          514 SMHIWSLK  521 (563)
Q Consensus       514 ~v~iw~~~  521 (563)
                      +|+.++..
T Consensus       246 rI~~i~~~  253 (260)
T d1rwia_         246 RVVKLTSL  253 (260)
T ss_dssp             EEEEECCC
T ss_pred             EEEEEeCC
Confidence            77766543

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.96  E-value=1.4e-06  Score=81.89  Aligned_cols=241  Identities=11%  Similarity=0.131  Sum_probs=150.1

Q ss_pred             CceEEEEECCCCCEEEEeeC-------CCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCE
Q 008496          216 SEVCACAWSPAGSLLASGSG-------DSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTL  288 (563)
Q Consensus       216 ~~V~~~~~sp~~~~latgs~-------D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~  288 (563)
                      ......+|.|+|+++++...       ++.|..|+..++...           ....  .........-..++|.++|+.
T Consensus        18 ~g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~-----------~~~~--~~~~~~~g~P~Gl~~~~dg~~   84 (314)
T d1pjxa_          18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKT-----------VICK--PEVNGYGGIPAGCQCDRDANQ   84 (314)
T ss_dssp             TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEE-----------EEEC--CEETTEECCEEEEEECSSSSE
T ss_pred             CCCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEE-----------EEEC--CccccCCCcceeEEEeCCCCE
Confidence            34567899999998776432       456777876554210           0100  000011123567999999998


Q ss_pred             EEEEeCCCeEEEEEcCCceeEeeccCC-C----CEEEEEeCCCCCEEEEeeC---------------CCcEEEEECCCCc
Q 008496          289 LATGSYDGQARIWSTNGDLKCTLSKHK-G----PIFSLKWNKKGDYLLTGSC---------------DKTAIVWDVKTEE  348 (563)
Q Consensus       289 l~sg~~dg~i~vw~~~~~~~~~~~~h~-~----~V~~l~~~~~~~~l~s~s~---------------D~~v~iwd~~~~~  348 (563)
                      ++++...+.+...+.++.....+.... +    ....+.+.++|+..++-..               +|.|..++.. ++
T Consensus        85 l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~d-g~  163 (314)
T d1pjxa_          85 LFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQ  163 (314)
T ss_dssp             EEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SC
T ss_pred             EEEEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeec-Cc
Confidence            888888788888998877654432221 1    2467889999987776432               2344444432 33


Q ss_pred             eeEEeeecccCeEEEecC--CC----ceEEEEeCCCeEEEEEcCCCccee------eecC-CCcceeEEEECCCCCEEEE
Q 008496          349 WKQQFEFHSGPTLDVDWR--NN----VSFATSSTDNMIYVCKIGENRPIK------TFAG-HQGEVNCVKWDPTGSLLAS  415 (563)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~--~~----~~~~~~~~d~~i~~~~~~~~~~~~------~~~~-h~~~i~~~~~~~~~~~las  415 (563)
                      ...... .......+.|.  .+    ..+++-+..+.|+.+++.....+.      .+.+ +.+....++++.+|++.++
T Consensus       164 ~~~~~~-~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa  242 (314)
T d1pjxa_         164 MIQVDT-AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVA  242 (314)
T ss_dssp             EEEEEE-EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEE
T ss_pred             eeEeeC-CcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEE
Confidence            222221 11122233442  22    245566778888888875443221      2222 2234568999999999888


Q ss_pred             EeCCCcEEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCC
Q 008496          416 CSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVE  479 (563)
Q Consensus       416 ~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~  479 (563)
                      ....+.|.+||...+.....+.......++++|.|++.        .+.++.+.+|.|.-.++.
T Consensus       243 ~~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~--------~lyVt~~~~g~i~~~~~~  298 (314)
T d1pjxa_         243 NWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTK--------TIFVTEHENNAVWKFEWQ  298 (314)
T ss_dssp             EETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSS--------EEEEEETTTTEEEEEECS
T ss_pred             EcCCCEEEEEeCCCCEEEEEEECCCCCEEEEEEeCCCC--------EEEEEECCCCcEEEEECC
Confidence            88889999999887776666666667788999988663        356777788888887764

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.94  E-value=3.4e-07  Score=86.25  Aligned_cols=234  Identities=10%  Similarity=0.089  Sum_probs=136.8

Q ss_pred             eEEEEECCCCCEEEEEeC-------CCeEEEEEcCCceeEeecc-----CCCCEEEEEeCCCCCEEEEeeCCCcEEEEEC
Q 008496          277 VTTLDWNGEGTLLATGSY-------DGQARIWSTNGDLKCTLSK-----HKGPIFSLKWNKKGDYLLTGSCDKTAIVWDV  344 (563)
Q Consensus       277 V~~l~~s~~g~~l~sg~~-------dg~i~vw~~~~~~~~~~~~-----h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~  344 (563)
                      .-.++|.++|++.++...       +|.|..|+..+.....+..     ..+.-..+.|.++++.++++...+.+...|.
T Consensus        20 ~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~~~~   99 (314)
T d1pjxa_          20 AEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQT   99 (314)
T ss_dssp             CEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEEET
T ss_pred             CeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCeEEEEeC
Confidence            567789999998876433       4678888877654333221     1123568999999998888887778888887


Q ss_pred             CCCceeEEeeeccc----CeEEEecCCCceE-EEEeC---------------CCeEEEEEcCCCcceeeecCCCcceeEE
Q 008496          345 KTEEWKQQFEFHSG----PTLDVDWRNNVSF-ATSST---------------DNMIYVCKIGENRPIKTFAGHQGEVNCV  404 (563)
Q Consensus       345 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~-~~~~~---------------d~~i~~~~~~~~~~~~~~~~h~~~i~~~  404 (563)
                      .+...........+    ...++....+..+ ++...               .+.|+.++.  ......+...-...+.+
T Consensus       100 ~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~--dg~~~~~~~~~~~pNGi  177 (314)
T d1pjxa_         100 DGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTT--DGQMIQVDTAFQFPNGI  177 (314)
T ss_dssp             TSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECT--TSCEEEEEEEESSEEEE
T ss_pred             CCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEee--cCceeEeeCCcceeeee
Confidence            65432211111111    1122333222222 22110               112222222  11112222222234678


Q ss_pred             EECCCCC-----EEEEEeCCCcEEEEeCCCCceee------eecc-cCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCe
Q 008496          405 KWDPTGS-----LLASCSDDVTAKIWNMKQDKYVH------DLRE-HSKEIYTIRWSPTGSGTNNPNQQLILASASFDST  472 (563)
Q Consensus       405 ~~~~~~~-----~las~s~dg~i~iwd~~~~~~~~------~~~~-~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~  472 (563)
                      +|+|++.     ++++-+..+.|..|++.....+.      .+.. +....-.+++.++|.         +.++....+.
T Consensus       178 ~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~Gn---------lyVa~~~~g~  248 (314)
T d1pjxa_         178 AVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNN---------LLVANWGSSH  248 (314)
T ss_dssp             EEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCC---------EEEEEETTTE
T ss_pred             EECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCc---------EEEEEcCCCE
Confidence            9988764     55666778888888875443222      1111 112234567766664         4555667789


Q ss_pred             EEEEeCCCCeEEEEecCCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEecC
Q 008496          473 VKLWDVELGKLLYSLNGHREPVYSLAFSPTGE-YLASGSLDKSMHIWSLK  521 (563)
Q Consensus       473 i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~-~lasgs~dg~v~iw~~~  521 (563)
                      |.+||.+.++.+..+.......++++|.||++ ++++.+..|+|..+++.
T Consensus       249 I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~  298 (314)
T d1pjxa_         249 IEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ  298 (314)
T ss_dssp             EEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred             EEEEeCCCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECC
Confidence            99999987776666655556789999999997 45666777888877764

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.91  E-value=2.8e-06  Score=78.32  Aligned_cols=234  Identities=12%  Similarity=0.185  Sum_probs=148.3

Q ss_pred             CeEEEEECCCCCEEEEEeCCCeEEEEEcCCceeEeeccC------CCCEEEEEeCCCC-CEEEE-eeCCCcEEEEECCCC
Q 008496          276 DVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKH------KGPIFSLKWNKKG-DYLLT-GSCDKTAIVWDVKTE  347 (563)
Q Consensus       276 ~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~~~~~~~h------~~~V~~l~~~~~~-~~l~s-~s~D~~v~iwd~~~~  347 (563)
                      .-..++++++|+++++-..+..|++|+.+|.....+...      ...-..+.+.++. ..+++ .+.++.|.+++. .+
T Consensus        24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~g  102 (279)
T d1q7fa_          24 EPSGVAVNAQNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ-YG  102 (279)
T ss_dssp             CEEEEEECTTCCEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECT-TS
T ss_pred             CccEEEEcCCCCEEEEECCCCEEEEEeCCCCEEEEecccCCCcccccccccccccccccccceeccCCccccccccc-cc
Confidence            467899999999988888889999999999877655321      1123455554443 34443 334557777775 34


Q ss_pred             ceeEEeeec-ccCeEEEecCC-CceEEEEeCCCeEEEEEcCCCcceeee--cCCCcceeEEEECCCCCEEEEEeCCCcEE
Q 008496          348 EWKQQFEFH-SGPTLDVDWRN-NVSFATSSTDNMIYVCKIGENRPIKTF--AGHQGEVNCVKWDPTGSLLASCSDDVTAK  423 (563)
Q Consensus       348 ~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~d~~i~~~~~~~~~~~~~~--~~h~~~i~~~~~~~~~~~las~s~dg~i~  423 (563)
                      .....+... ......+.... ...+++....+.+.+++.. .+.+..+  ..+......++++++++++++....+.|+
T Consensus       103 ~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~  181 (279)
T d1q7fa_         103 QFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVK  181 (279)
T ss_dssp             CEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEE
T ss_pred             cceeecCCCcccccceeccccCCcEEEEeeccceeeEeccC-CceeecccccccccccceeeeccceeEEeeecccccee
Confidence            444443221 11122222222 2334444444555555433 2334443  23445678899999999999999899999


Q ss_pred             EEeCCCCceeeeec--ccCCCEEEEEEccCCCCCCCCCCcEEEEEE-eCCCeEEEEeCCCCeEEEEecC--CCCCEEEEE
Q 008496          424 IWNMKQDKYVHDLR--EHSKEIYTIRWSPTGSGTNNPNQQLILASA-SFDSTVKLWDVELGKLLYSLNG--HREPVYSLA  498 (563)
Q Consensus       424 iwd~~~~~~~~~~~--~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~-s~dg~i~iwd~~~~~~~~~~~~--h~~~i~~l~  498 (563)
                      +||... +.+..+-  +.......|++.|+|.         ++++- ..++.|.+|+. +|+.+.++..  .......|+
T Consensus       182 ~~d~~G-~~~~~~g~~g~~~~P~giavD~~G~---------i~Vad~~~~~~v~~f~~-~G~~~~~~~~~~~~~~p~~va  250 (279)
T d1q7fa_         182 VFNYEG-QYLRQIGGEGITNYPIGVGINSNGE---------ILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVA  250 (279)
T ss_dssp             EEETTC-CEEEEESCTTTSCSEEEEEECTTCC---------EEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEE
T ss_pred             eeecCC-ceeeeecccccccCCcccccccCCe---------EEEEECCCCcEEEEECC-CCCEEEEEeCCCCCCCEeEEE
Confidence            999754 4454442  2344567888888774         44443 34567999985 5887766642  223468999


Q ss_pred             EcCCCCEEEEEeCCCcEEEEecCCC
Q 008496          499 FSPTGEYLASGSLDKSMHIWSLKEG  523 (563)
Q Consensus       499 ~spdg~~lasgs~dg~v~iw~~~~~  523 (563)
                      +.|||.+++ ++.+.+|++|.....
T Consensus       251 v~~dG~l~V-~~~n~~v~~fr~~~~  274 (279)
T d1q7fa_         251 LMDDGSVVL-ASKDYRLYIYRYVQL  274 (279)
T ss_dssp             EETTTEEEE-EETTTEEEEEECSCC
T ss_pred             EeCCCcEEE-EeCCCeEEEEEeeee
Confidence            999997655 567899999998754

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.86  E-value=2.8e-06  Score=81.76  Aligned_cols=250  Identities=8%  Similarity=0.040  Sum_probs=134.1

Q ss_pred             CCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEE--EEE
Q 008496          215 TSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLL--ATG  292 (563)
Q Consensus       215 ~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l--~sg  292 (563)
                      ...+.-++|+|++++|++... +.+..|.+.....          ........     .......++++++++.+  +++
T Consensus        39 ~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~----------~~~~~~~~-----~~~~p~~v~~~~~~~~~~v~~a  102 (365)
T d1jofa_          39 DEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTE----------IVHEASHP-----IGGHPRANDADTNTRAIFLLAA  102 (365)
T ss_dssp             TCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTE----------EEEEEEEE-----CCSSGGGGCTTSCCEEEEEEEC
T ss_pred             CCCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCC----------eEEEeeec-----CCCCcEEEEECCCCCEEEEEEe
Confidence            344566999999998887754 4577776643210          01000000     01123345566777633  222


Q ss_pred             eC-CCeEEEEEcC--------------CceeEe----eccCCCCEEEEEeCCCCCEEEEeeC-CCcEEEEECCCCceeEE
Q 008496          293 SY-DGQARIWSTN--------------GDLKCT----LSKHKGPIFSLKWNKKGDYLLTGSC-DKTAIVWDVKTEEWKQQ  352 (563)
Q Consensus       293 ~~-dg~i~vw~~~--------------~~~~~~----~~~h~~~V~~l~~~~~~~~l~s~s~-D~~v~iwd~~~~~~~~~  352 (563)
                      .+ .+.+..+...              +.....    -.....-+.++.|+|+|+++++++. ...|.+|+.........
T Consensus       103 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~  182 (365)
T d1jofa_         103 KQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVEL  182 (365)
T ss_dssp             SSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEE
T ss_pred             cCCCCEEEEeEccCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceee
Confidence            22 2444443321              111110    1112234789999999999888764 34677776432211100


Q ss_pred             eeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEE-EeCCCcEEEEeCCCCc
Q 008496          353 FEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLAS-CSDDVTAKIWNMKQDK  431 (563)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las-~s~dg~i~iwd~~~~~  431 (563)
                      ..                                   .+.. .........++|+|+++++.. +-.+++|.+|++....
T Consensus       183 ~~-----------------------------------~~~~-~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~  226 (365)
T d1jofa_         183 VG-----------------------------------SVDA-PDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPAT  226 (365)
T ss_dssp             EE-----------------------------------EEEC-SSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTT
T ss_pred             cc-----------------------------------ceee-cCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCC
Confidence            00                                   0000 112234678999999998754 4458899999986654


Q ss_pred             ee--eeec-----------------ccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCC-----eEEEEeCCCC-eEE--
Q 008496          432 YV--HDLR-----------------EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDS-----TVKLWDVELG-KLL--  484 (563)
Q Consensus       432 ~~--~~~~-----------------~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg-----~i~iwd~~~~-~~~--  484 (563)
                      ..  ....                 .+......+.++|+|.        .++++...+.     .|..|++... ...  
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~--------~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~  298 (365)
T d1jofa_         227 HMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGK--------YMFASSRANKFELQGYIAGFKLRDCGSIEKQ  298 (365)
T ss_dssp             CCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSS--------EEEEEEEESSTTSCCEEEEEEECTTSCEEEE
T ss_pred             ceEEEEeeeeccccccccccccccccccCCccceEECCCCC--------EEEEEcccCCCccceEEEEEEecCCCceeeE
Confidence            22  1110                 1112345678888875        2334433222     3777776542 211  


Q ss_pred             ---EEecCCCCCEEEEEEcC-CCCEEEEE-eCCCcEEEEecCCCe
Q 008496          485 ---YSLNGHREPVYSLAFSP-TGEYLASG-SLDKSMHIWSLKEGK  524 (563)
Q Consensus       485 ---~~~~~h~~~i~~l~~sp-dg~~lasg-s~dg~v~iw~~~~~~  524 (563)
                         ............++|+| +|++|+++ ..++.|.||++....
T Consensus       299 ~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~~  343 (365)
T d1jofa_         299 LFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEF  343 (365)
T ss_dssp             EEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTE
T ss_pred             eEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCCc
Confidence               11111223347799998 89988766 467899999886554

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.77  E-value=2.3e-06  Score=85.03  Aligned_cols=292  Identities=10%  Similarity=0.102  Sum_probs=151.8

Q ss_pred             ceEEEEECCCCCEEEEee---------CCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCC
Q 008496          217 EVCACAWSPAGSLLASGS---------GDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT  287 (563)
Q Consensus       217 ~V~~~~~sp~~~~latgs---------~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~  287 (563)
                      .+....||||+++++.+.         ..+...++|+.++....              +.. .......+....|||||+
T Consensus        62 ~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~--------------l~~-~~~~~~~l~~~~wSPDG~  126 (465)
T d1xfda1          62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQS--------------LDP-PEVSNAKLQYAGWGPKGQ  126 (465)
T ss_dssp             TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEE--------------CCC-TTCCSCCCSBCCBCSSTT
T ss_pred             ccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceee--------------ccC-ccCCccccceeeeccCCc
Confidence            456778999999877653         34667788887654211              000 011123355578999999


Q ss_pred             EEEEEeCCCeEEEEEcCCceeE--eeccCCCCE-----------------EEEEeCCCCCEEEEeeCC-CcEEEE-----
Q 008496          288 LLATGSYDGQARIWSTNGDLKC--TLSKHKGPI-----------------FSLKWNKKGDYLLTGSCD-KTAIVW-----  342 (563)
Q Consensus       288 ~l~sg~~dg~i~vw~~~~~~~~--~~~~h~~~V-----------------~~l~~~~~~~~l~s~s~D-~~v~iw-----  342 (563)
                      .||-.. ++.+.+.+..+....  +..+..+.|                 .++-|||+|++|+....| ..|..+     
T Consensus       127 ~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~  205 (465)
T d1xfda1         127 QLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTY  205 (465)
T ss_dssp             CEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCC
T ss_pred             eEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEecccccceeecccc
Confidence            998765 567777775443222  222222222                 467899999999986543 223333     


Q ss_pred             ----------------------------ECCCCceeEEeee------cccCeEEEecCCCceEEEEeCC-----CeEEEE
Q 008496          343 ----------------------------DVKTEEWKQQFEF------HSGPTLDVDWRNNVSFATSSTD-----NMIYVC  383 (563)
Q Consensus       343 ----------------------------d~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~d-----~~i~~~  383 (563)
                                                  |+.++........      ...-+..+.|.++..++....+     ..+.++
T Consensus       206 ~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~  285 (465)
T d1xfda1         206 TGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLC  285 (465)
T ss_dssp             SSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEE
T ss_pred             cccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEE
Confidence                                        3322211100000      0001234567666555433221     246677


Q ss_pred             EcCCCcceeeecCC-Ccce----eEEEECCCCCEEE--EEe-CCC--cEEEEeC------CCCceeeeecccCCCEEEE-
Q 008496          384 KIGENRPIKTFAGH-QGEV----NCVKWDPTGSLLA--SCS-DDV--TAKIWNM------KQDKYVHDLREHSKEIYTI-  446 (563)
Q Consensus       384 ~~~~~~~~~~~~~h-~~~i----~~~~~~~~~~~la--s~s-~dg--~i~iwd~------~~~~~~~~~~~~~~~i~~~-  446 (563)
                      +..+++....+..+ .+.|    ....|+|+|+.++  ..+ .+|  .+....+      ..+..+..+....-.|..+ 
T Consensus       286 d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~~~~~~~~~~~~~~~~~~LT~G~w~V~~i~  365 (465)
T d1xfda1         286 DATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKIL  365 (465)
T ss_dssp             ETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEE
T ss_pred             cCCCCcEEEEEEEcCCceEeccCCceeEccCCCeeEEEEeeeecccCceEEEEeccccccCCCceeEEeccCCceEEEEE
Confidence            77766554443321 2222    3467899998532  223 233  2222221      1222233343334445554 


Q ss_pred             EEccCCCCCCCCCCcEEEEEEeCCC--eEEEEe--CCCCeEEEEec---CCCCCEEEEEEcCCCCEEEEEeC---CCcEE
Q 008496          447 RWSPTGSGTNNPNQQLILASASFDS--TVKLWD--VELGKLLYSLN---GHREPVYSLAFSPTGEYLASGSL---DKSMH  516 (563)
Q Consensus       447 ~~~p~~~~~~~~~~~~~l~s~s~dg--~i~iwd--~~~~~~~~~~~---~h~~~i~~l~~spdg~~lasgs~---dg~v~  516 (563)
                      .|.+.+.        .+..++..++  .-.||.  +..+.....+.   .......++.|||+|++++....   --.+.
T Consensus       366 ~~d~~~~--------~vyF~a~~~~p~~~hly~v~l~g~~~~~~lt~~~~~~~~~~~~~~S~~~~y~v~~~s~~~~P~~~  437 (465)
T d1xfda1         366 AYDEKGN--------KIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCEGPGVPMVT  437 (465)
T ss_dssp             EEETTTT--------EEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECCSSSSCCEE
T ss_pred             EEcCCCC--------EEEEEEeCCCCCceEEEEEECCCCCcceeeccccCCCCCEEEEEECCCCCEEEEEeecCCCCeEE
Confidence            5666543        2334444332  223443  33222211111   23345679999999999884332   24688


Q ss_pred             EEecCCCeeEEEEecC
Q 008496          517 IWSLKEGKIVKTYTGN  532 (563)
Q Consensus       517 iw~~~~~~~~~~~~~~  532 (563)
                      +++..+++.+..+..+
T Consensus       438 ~~~~~~~~~~~~Le~N  453 (465)
T d1xfda1         438 VHNTTDKKKMFDLETN  453 (465)
T ss_dssp             EEETTTCCEEEEEECC
T ss_pred             EEECCCCCEEEEEcCC
Confidence            9999999988887654

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.69  E-value=4.7e-05  Score=71.32  Aligned_cols=226  Identities=10%  Similarity=0.073  Sum_probs=139.3

Q ss_pred             CCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecCCCceE-EEEeC----CCeEEEEEcCCCcc
Q 008496          316 GPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSF-ATSST----DNMIYVCKIGENRP  390 (563)
Q Consensus       316 ~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~----d~~i~~~~~~~~~~  390 (563)
                      ..+.+++|.++|+..++-...+.|..||..++.....+.........+.+..+..+ ++...    .+.+...+......
T Consensus        40 ~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~  119 (319)
T d2dg1a1          40 LQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNL  119 (319)
T ss_dssp             CCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSC
T ss_pred             cCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCcee
Confidence            34568899999987777778889999998877655544433344455555544333 33222    12233333333222


Q ss_pred             eeeecC--CCcceeEEEECCCCCEEEEEeCC------CcEEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcE
Q 008496          391 IKTFAG--HQGEVNCVKWDPTGSLLASCSDD------VTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQL  462 (563)
Q Consensus       391 ~~~~~~--h~~~i~~~~~~~~~~~las~s~d------g~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~  462 (563)
                      ......  -....+.+++.++|++.++....      +.+..++.... .+..+...-.....++|+|++.        .
T Consensus       120 ~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~-~~~~~~~~~~~pnGia~s~dg~--------~  190 (319)
T d2dg1a1         120 QDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFR-TVTPIIQNISVANGIALSTDEK--------V  190 (319)
T ss_dssp             EEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSC-CEEEEEEEESSEEEEEECTTSS--------E
T ss_pred             eeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccc-eeEEEeeccceeeeeeeccccc--------e
Confidence            222211  12347789999999987765332      22444443332 2222222233456789998874        3


Q ss_pred             EEEEEeCCCeEEEEeCCCC-e---EE-----EEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEecC-
Q 008496          463 ILASASFDSTVKLWDVELG-K---LL-----YSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGN-  532 (563)
Q Consensus       463 ~l~s~s~dg~i~iwd~~~~-~---~~-----~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~~-  532 (563)
                      +.++-+..+.|..|++... .   ..     ....+. ..-..+++.++|++.++....+.|.+|+. +|+++..+... 
T Consensus       191 lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~-~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~i~~P~  268 (319)
T d2dg1a1         191 LWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPG  268 (319)
T ss_dssp             EEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTT
T ss_pred             EEEecccCCceEEEEEcCCCceeccccceeeeccCCc-cceeeeeEcCCCCEEEEEcCCCEEEEECC-CCcEEEEEeCCC
Confidence            5566777899999987532 1   11     111112 22467999999999888888999999995 78888877532 


Q ss_pred             ------CCEEEEEEcCCCCEEEEEEC
Q 008496          533 ------GGIFEVCWNKEGDKIAACFA  552 (563)
Q Consensus       533 ------~~i~~l~w~~~g~~la~~~~  552 (563)
                            ..+++++|.++++.|.+...
T Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~t~~  294 (319)
T d2dg1a1         269 RDEGHMLRSTHPQFIPGTNQLIICSN  294 (319)
T ss_dssp             GGGTCSCBCCEEEECTTSCEEEEEEE
T ss_pred             cCCCcCceeeeEEEeCCCCEEEEEcC
Confidence                  13678999999988877654

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.61  E-value=4.1e-05  Score=71.73  Aligned_cols=225  Identities=12%  Similarity=0.100  Sum_probs=133.3

Q ss_pred             CeEEEEECCCCCEEEEEeCCCeEEEEEcCCce-eEeeccCCCCEEEEEeCCCCCEEEEeeCC----CcEEEEECCCCcee
Q 008496          276 DVTTLDWNGEGTLLATGSYDGQARIWSTNGDL-KCTLSKHKGPIFSLKWNKKGDYLLTGSCD----KTAIVWDVKTEEWK  350 (563)
Q Consensus       276 ~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~-~~~~~~h~~~V~~l~~~~~~~~l~s~s~D----~~v~iwd~~~~~~~  350 (563)
                      .+..++|.++|++.++-...+.|.-|+.++.. ...+........+++++++|+.+++...+    +.+...+..+....
T Consensus        41 ~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~  120 (319)
T d2dg1a1          41 QLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQ  120 (319)
T ss_dssp             CEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCE
T ss_pred             CcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCceee
Confidence            35688999999988888888999999987754 33444555667899999999877765433    33555555555443


Q ss_pred             EEeeecc--cCeEEEecCCCceEEEEeCC-------CeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEE-EEEeCCC
Q 008496          351 QQFEFHS--GPTLDVDWRNNVSFATSSTD-------NMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLL-ASCSDDV  420 (563)
Q Consensus       351 ~~~~~~~--~~~~~~~~~~~~~~~~~~~d-------~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l-as~s~dg  420 (563)
                      .......  ....++.+..+..+..+...       +.++.++... +.+..+...-...+.++|+|+++.| ++-+..+
T Consensus       121 ~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg-~~~~~~~~~~~~pnGia~s~dg~~lyvad~~~~  199 (319)
T d2dg1a1         121 DIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDF-RTVTPIIQNISVANGIALSTDEKVLWVTETTAN  199 (319)
T ss_dssp             EEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTS-CCEEEEEEEESSEEEEEECTTSSEEEEEEGGGT
T ss_pred             eeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEeccc-ceeEEEeeccceeeeeeeccccceEEEecccCC
Confidence            3322111  11233333333333222211       1222222221 2222222222345789999999855 5666788


Q ss_pred             cEEEEeCCCCce-eeee-------cccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEec----
Q 008496          421 TAKIWNMKQDKY-VHDL-------REHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLN----  488 (563)
Q Consensus       421 ~i~iwd~~~~~~-~~~~-------~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~----  488 (563)
                      .|..|++..... ....       ......--.+++.++|.         +.++....+.|.+||. .|+.+.++.    
T Consensus       200 ~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~---------l~Va~~~~g~V~~~~p-~G~~l~~i~~P~~  269 (319)
T d2dg1a1         200 RLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDN---------LYVAMYGQGRVLVFNK-RGYPIGQILIPGR  269 (319)
T ss_dssp             EEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCC---------EEEEEETTTEEEEECT-TSCEEEEEECTTG
T ss_pred             ceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCC---------EEEEEcCCCEEEEECC-CCcEEEEEeCCCc
Confidence            999998764321 1100       01111234567766664         5566677899999996 588877664    


Q ss_pred             --CCCCCEEEEEEcCCCCEEEEEeC
Q 008496          489 --GHREPVYSLAFSPTGEYLASGSL  511 (563)
Q Consensus       489 --~h~~~i~~l~~spdg~~lasgs~  511 (563)
                        ++...+++++|.|++..+.+.+.
T Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~t~~  294 (319)
T d2dg1a1         270 DEGHMLRSTHPQFIPGTNQLIICSN  294 (319)
T ss_dssp             GGTCSCBCCEEEECTTSCEEEEEEE
T ss_pred             CCCcCceeeeEEEeCCCCEEEEEcC
Confidence              33445789999998877665543

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.46  E-value=7.6e-06  Score=81.24  Aligned_cols=261  Identities=13%  Similarity=0.211  Sum_probs=141.3

Q ss_pred             EECCCCCEEEEEeCCCeEEEEEcCCceeEe-eccC---CCCEEEEEeCCCCCEEEEee---------CCCcEEEEECCCC
Q 008496          281 DWNGEGTLLATGSYDGQARIWSTNGDLKCT-LSKH---KGPIFSLKWNKKGDYLLTGS---------CDKTAIVWDVKTE  347 (563)
Q Consensus       281 ~~s~~g~~l~sg~~dg~i~vw~~~~~~~~~-~~~h---~~~V~~l~~~~~~~~l~s~s---------~D~~v~iwd~~~~  347 (563)
                      .|.+++.++.. ..+|.+.+|+........ +..+   .-.+....|||++++++...         ..+.+.++|+.++
T Consensus        23 ~W~~~~~~~~~-~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~  101 (465)
T d1xfda1          23 KWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHG  101 (465)
T ss_dssp             CBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSC
T ss_pred             EEeCCCcEEEE-eCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCC
Confidence            58888876543 557889999976433222 2222   23567788999999987653         3567889999988


Q ss_pred             ceeEEeeec--ccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeec-CCCcc-----------------eeEEEEC
Q 008496          348 EWKQQFEFH--SGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFA-GHQGE-----------------VNCVKWD  407 (563)
Q Consensus       348 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~-~h~~~-----------------i~~~~~~  407 (563)
                      .........  ...+....|.++...++-..++.|++.+...+..++... |..+.                 -.++.||
T Consensus       102 ~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WS  181 (465)
T d1xfda1         102 DPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWS  181 (465)
T ss_dssp             CCEECCCTTCCSCCCSBCCBCSSTTCEEEEETTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEEC
T ss_pred             ceeeccCccCCccccceeeeccCCceEEEEecceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEEC
Confidence            755432221  222334567655443333446778887776555443322 21111                 1468899


Q ss_pred             CCCCEEEEEeC-CCcEEEE---------------------------------eCCCCceeeee------cccCCCEEEEE
Q 008496          408 PTGSLLASCSD-DVTAKIW---------------------------------NMKQDKYVHDL------REHSKEIYTIR  447 (563)
Q Consensus       408 ~~~~~las~s~-dg~i~iw---------------------------------d~~~~~~~~~~------~~~~~~i~~~~  447 (563)
                      |||+.||.... +..+..+                                 |+.++......      .....-+..+.
T Consensus       182 PDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~  261 (465)
T d1xfda1         182 PDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVK  261 (465)
T ss_dssp             TTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEE
T ss_pred             CCCCeEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeE
Confidence            99999988653 3333333                                 32222111000      01111245677


Q ss_pred             EccCCCCCCCCCCcEEEEEEeCCC---eEEEEeCCCCeEEEEecCC-CCCE----EEEEEcCCCCEEE--EEe-CCC--c
Q 008496          448 WSPTGSGTNNPNQQLILASASFDS---TVKLWDVELGKLLYSLNGH-REPV----YSLAFSPTGEYLA--SGS-LDK--S  514 (563)
Q Consensus       448 ~~p~~~~~~~~~~~~~l~s~s~dg---~i~iwd~~~~~~~~~~~~h-~~~i----~~l~~spdg~~la--sgs-~dg--~  514 (563)
                      |+|++.        .++.....+.   .|.++|..+|++...+... ...|    ....|+|||+.++  ..+ .+|  .
T Consensus       262 W~~d~~--------~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~  333 (465)
T d1xfda1         262 WATSTK--------VAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGK  333 (465)
T ss_dssp             ESSSSE--------EEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSC
T ss_pred             EcCCCe--------EEEEEEccccccceEEEEcCCCCcEEEEEEEcCCceEeccCCceeEccCCCeeEEEEeeeecccCc
Confidence            777653        3444444332   5778899988775544321 1212    3457999998543  222 233  2


Q ss_pred             EEEEecC------CCeeEEEEe-cCCCEEE-EEEcCCCCEEEEE
Q 008496          515 MHIWSLK------EGKIVKTYT-GNGGIFE-VCWNKEGDKIAAC  550 (563)
Q Consensus       515 v~iw~~~------~~~~~~~~~-~~~~i~~-l~w~~~g~~la~~  550 (563)
                      +....+.      .++.++.++ +.-.|.+ ++|+.+++.|...
T Consensus       334 ly~~~~~~~~~~~~~~~~~~LT~G~w~V~~i~~~d~~~~~vyF~  377 (465)
T d1xfda1         334 FYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFL  377 (465)
T ss_dssp             EEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEE
T ss_pred             eEEEEeccccccCCCceeEEeccCCceEEEEEEEcCCCCEEEEE
Confidence            3222221      222222222 2223555 5799999877654

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.43  E-value=7.4e-06  Score=75.01  Aligned_cols=229  Identities=13%  Similarity=0.106  Sum_probs=118.8

Q ss_pred             ECCC--CCEEEEEeCCCeEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEEEeeC-CC-----cEEEEECCCCceeEEe
Q 008496          282 WNGE--GTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSC-DK-----TAIVWDVKTEEWKQQF  353 (563)
Q Consensus       282 ~s~~--g~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~-D~-----~v~iwd~~~~~~~~~~  353 (563)
                      .|||  |+.++-.+ +|.|.+.+..+.....+..+.+.+...+|||||++|+.... ++     .|.++++.+++..+..
T Consensus         6 ~sPdi~G~~v~f~~-~~dl~~~d~~~g~~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt   84 (281)
T d1k32a2           6 LNPDIHGDRIIFVC-CDDLWEHDLKSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRIT   84 (281)
T ss_dssp             EEEEEETTEEEEEE-TTEEEEEETTTCCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECC
T ss_pred             cCCCCCCCEEEEEe-CCcEEEEECCCCCEEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEee
Confidence            4688  88888764 46788889988777788888888999999999999885432 22     2445555555432210


Q ss_pred             eecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCC------CcEEEEeC
Q 008496          354 EFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDD------VTAKIWNM  427 (563)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~d------g~i~iwd~  427 (563)
                      .. .                                  ............+.|+|+|+.|+.....      ..+...+.
T Consensus        85 ~~-~----------------------------------~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~  129 (281)
T d1k32a2          85 YF-S----------------------------------GKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVEN  129 (281)
T ss_dssp             CC-C----------------------------------EEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEG
T ss_pred             ec-C----------------------------------CCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecC
Confidence            00 0                                  0000111234567899999888764332      12344444


Q ss_pred             CCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCC-----------CeEEEEeCCCCeEEEEecCCCCCEEE
Q 008496          428 KQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFD-----------STVKLWDVELGKLLYSLNGHREPVYS  496 (563)
Q Consensus       428 ~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~d-----------g~i~iwd~~~~~~~~~~~~h~~~i~~  496 (563)
                      ........   +...... .|.+++.        .+++....+           ....++........... .+......
T Consensus       130 ~~~~~~~~---~~~~~~~-~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  196 (281)
T d1k32a2         130 DGINFVPL---NLGPATH-ILFADGR--------RVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIV-DMSTHVSS  196 (281)
T ss_dssp             GGTEEEEC---CSCSCSE-EEEETTE--------EEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEE-CCSSCCEE
T ss_pred             CCceeEEe---cCCccce-eeecCCC--------eEEEeeccccceeeeeccCCcceeeeeccccceeecc-CCccccce
Confidence            43332211   1111111 2222221        111111111           11111111222222222 23334455


Q ss_pred             EEEcCCCCEEEEEeCC--CcEEEEecCCCeeEEEEecCCCEEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496          497 LAFSPTGEYLASGSLD--KSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLDFR  562 (563)
Q Consensus       497 l~~spdg~~lasgs~d--g~v~iw~~~~~~~~~~~~~~~~i~~l~w~~~g~~la~~~~~~~v~v~~~~  562 (563)
                      ..++++..+ .....+  ..|.++|+.++++.+. ..........|+|||++|+.. .++.+.++|+.
T Consensus       197 ~~~~~~~~~-~~~~~~~~~~l~~~d~~g~~~~~l-t~~~~~~~~~~SpDG~~I~f~-~~~~l~~~d~~  261 (281)
T d1k32a2         197 PVIVGHRIY-FITDIDGFGQIYSTDLDGKDLRKH-TSFTDYYPRHLNTDGRRILFS-KGGSIYIFNPD  261 (281)
T ss_dssp             EEEETTEEE-EEECTTSSCEEEEEETTSCSCEEC-CCCCSSCEEEEEESSSCEEEE-ETTEEEEECTT
T ss_pred             eeeeccccc-eecccccccceEEEeCCCCceEEe-ecCCCcccccCcCCCCEEEEE-eCCEEEEEECC
Confidence            666666322 222222  3577788876654432 222333345799999999886 46788888763

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.38  E-value=0.00071  Score=62.11  Aligned_cols=224  Identities=11%  Similarity=0.069  Sum_probs=143.0

Q ss_pred             EEEECC-CCCEEEEEeCCCeEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecc
Q 008496          279 TLDWNG-EGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHS  357 (563)
Q Consensus       279 ~l~~s~-~g~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~  357 (563)
                      ...|.+ ++.+..+=-..+.|.-|+..+.....+. ....+.++.+.++|..+++ +. ..+.++|..+++.......  
T Consensus        22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~~~~-~~~~~~~i~~~~dg~l~va-~~-~gl~~~d~~tg~~~~l~~~--   96 (295)
T d2ghsa1          22 GPTFDPASGTAWWFNILERELHELHLASGRKTVHA-LPFMGSALAKISDSKQLIA-SD-DGLFLRDTATGVLTLHAEL--   96 (295)
T ss_dssp             EEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEEE-CSSCEEEEEEEETTEEEEE-ET-TEEEEEETTTCCEEEEECS--
T ss_pred             CCeEECCCCEEEEEECCCCEEEEEECCCCeEEEEE-CCCCcEEEEEecCCCEEEE-Ee-CccEEeecccceeeEEeee--
Confidence            345776 4455555556788999998766554442 3457788999888866665 44 4588889887754321110  


Q ss_pred             cCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeC----CCcEEEEeCCCCcee
Q 008496          358 GPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD----DVTAKIWNMKQDKYV  433 (563)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~----dg~i~iwd~~~~~~~  433 (563)
                                                  ....       ....++.+.+.|+|++.++...    .+.-.+|.+..++..
T Consensus        97 ----------------------------~~~~-------~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~  141 (295)
T d2ghsa1          97 ----------------------------ESDL-------PGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVT  141 (295)
T ss_dssp             ----------------------------STTC-------TTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEE
T ss_pred             ----------------------------ecCC-------CcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEE
Confidence                                        0000       1124667778888887665432    223455655555433


Q ss_pred             eeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC------C--eEEEEecCCCCCEEEEEEcCCCCE
Q 008496          434 HDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL------G--KLLYSLNGHREPVYSLAFSPTGEY  505 (563)
Q Consensus       434 ~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~------~--~~~~~~~~h~~~i~~l~~spdg~~  505 (563)
                      ..+. .-..-..+.|++++.        .++++-+..+.|..+++..      +  .....+.+.......+++..+|++
T Consensus       142 ~~~~-~~~~~Ng~~~s~d~~--------~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~Gnl  212 (295)
T d2ghsa1         142 KLFA-DISIPNSICFSPDGT--------TGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHI  212 (295)
T ss_dssp             EEEE-EESSEEEEEECTTSC--------EEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCE
T ss_pred             EEee-ccCCcceeeecCCCc--------eEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCE
Confidence            3222 223456788888764        3667777888999887642      1  122233344455788999999998


Q ss_pred             EEEEeCCCcEEEEecCCCeeEEEEecC-CCEEEEEEc-CCCCEEEEEEC
Q 008496          506 LASGSLDKSMHIWSLKEGKIVKTYTGN-GGIFEVCWN-KEGDKIAACFA  552 (563)
Q Consensus       506 lasgs~dg~v~iw~~~~~~~~~~~~~~-~~i~~l~w~-~~g~~la~~~~  552 (563)
                      .++.-..+.|..||. +|+++..+.-. ..++++||- +|.+.|.+.+.
T Consensus       213 Wva~~~~g~V~~~dp-~G~~~~~i~lP~~~~T~~~FGG~d~~~LyvTta  260 (295)
T d2ghsa1         213 WNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASRLLVTSA  260 (295)
T ss_dssp             EEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSCEEEEEEB
T ss_pred             EeeeeCCCceEEecC-CCcEeeEecCCCCceEEEEEeCCCCCEEEEEEC
Confidence            887777889999995 68888888654 458999996 68887776544

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.14  E-value=9e-05  Score=67.38  Aligned_cols=94  Identities=6%  Similarity=0.074  Sum_probs=58.6

Q ss_pred             EECCC--CCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEEeC-C---
Q 008496          222 AWSPA--GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSY-D---  295 (563)
Q Consensus       222 ~~sp~--~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~-d---  295 (563)
                      ..||+  |+.+|..+ ++-|.+.++.++...           .+       ......+...+|||||+.||.... +   
T Consensus         5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~~-----------~L-------t~~~~~~~~p~~SPDG~~iaf~~~~~~~~   65 (281)
T d1k32a2           5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGSTR-----------KI-------VSNLGVINNARFFPDGRKIAIRVMRGSSL   65 (281)
T ss_dssp             CEEEEEETTEEEEEE-TTEEEEEETTTCCEE-----------EE-------ECSSSEEEEEEECTTSSEEEEEEEESTTC
T ss_pred             ccCCCCCCCEEEEEe-CCcEEEEECCCCCEE-----------EE-------ecCCCcccCEEECCCCCEEEEEEeeCCCC
Confidence            35788  88777654 345666677654310           11       112345778899999999986543 2   


Q ss_pred             --CeEEEEEcCCceeEeeccCC-------CCEEEEEeCCCCCEEEEee
Q 008496          296 --GQARIWSTNGDLKCTLSKHK-------GPIFSLKWNKKGDYLLTGS  334 (563)
Q Consensus       296 --g~i~vw~~~~~~~~~~~~h~-------~~V~~l~~~~~~~~l~s~s  334 (563)
                        ..|.+++..+.....+..+.       .......|+|+|+.|+...
T Consensus        66 ~~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~  113 (281)
T d1k32a2          66 NTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTD  113 (281)
T ss_dssp             CEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCCEEEEEC
T ss_pred             CceEEEEEEecCCceEEeeecCCCccCccccccccccCCCCCEEEEEE
Confidence              24666677666555443332       2346788999999887653

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.73  E-value=0.015  Score=52.71  Aligned_cols=208  Identities=9%  Similarity=0.044  Sum_probs=132.6

Q ss_pred             EEEEECCCC-CEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEEeCCCe
Q 008496          219 CACAWSPAG-SLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQ  297 (563)
Q Consensus       219 ~~~~~sp~~-~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~dg~  297 (563)
                      -+..|++.. .++.+=-..+.|..|+..++..         .  .. .       ....+.++++.++|.++++ +.+ .
T Consensus        21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~---------~--~~-~-------~~~~~~~i~~~~dg~l~va-~~~-g   79 (295)
T d2ghsa1          21 EGPTFDPASGTAWWFNILERELHELHLASGRK---------T--VH-A-------LPFMGSALAKISDSKQLIA-SDD-G   79 (295)
T ss_dssp             EEEEEETTTTEEEEEEGGGTEEEEEETTTTEE---------E--EE-E-------CSSCEEEEEEEETTEEEEE-ETT-E
T ss_pred             eCCeEECCCCEEEEEECCCCEEEEEECCCCeE---------E--EE-E-------CCCCcEEEEEecCCCEEEE-EeC-c
Confidence            356798864 4555544667888888765431         0  11 1       1235788999999877765 444 5


Q ss_pred             EEEEEcCCceeEeeccC-----CCCEEEEEeCCCCCEEEEeeCC----CcEEEEECCCCceeEEeeecccCeEEEecCCC
Q 008496          298 ARIWSTNGDLKCTLSKH-----KGPIFSLKWNKKGDYLLTGSCD----KTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNN  368 (563)
Q Consensus       298 i~vw~~~~~~~~~~~~h-----~~~V~~l~~~~~~~~l~s~s~D----~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  368 (563)
                      +.++|........+...     ...+..+.+.|+|+..++...+    +.-.+|.+..++....+.. ......+.|..+
T Consensus        80 l~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~-~~~~Ng~~~s~d  158 (295)
T d2ghsa1          80 LFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFAD-ISIPNSICFSPD  158 (295)
T ss_dssp             EEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEE-ESSEEEEEECTT
T ss_pred             cEEeecccceeeEEeeeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeec-cCCcceeeecCC
Confidence            77888765443333221     1246788899999876654332    3456666666655443332 223345556544


Q ss_pred             c--eEEEEeCCCeEEEEEcCCCc------c--eeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecc
Q 008496          369 V--SFATSSTDNMIYVCKIGENR------P--IKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLRE  438 (563)
Q Consensus       369 ~--~~~~~~~d~~i~~~~~~~~~------~--~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~  438 (563)
                      .  .+++-+..+.|+.+++....      .  ...+.+-.+....++++.+|++.++.-..+.|..||. .++.+..+..
T Consensus       159 ~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp-~G~~~~~i~l  237 (295)
T d2ghsa1         159 GTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEV  237 (295)
T ss_dssp             SCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEEC
T ss_pred             CceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecC-CCcEeeEecC
Confidence            3  45666778889998875321      1  1122344556788999999998888778889999995 5777777776


Q ss_pred             cCCCEEEEEEc
Q 008496          439 HSKEIYTIRWS  449 (563)
Q Consensus       439 ~~~~i~~~~~~  449 (563)
                      ....+++++|-
T Consensus       238 P~~~~T~~~FG  248 (295)
T d2ghsa1         238 PGKQTTCPAFI  248 (295)
T ss_dssp             SCSBEEEEEEE
T ss_pred             CCCceEEEEEe
Confidence            66778999995

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.61  E-value=0.021  Score=50.82  Aligned_cols=209  Identities=14%  Similarity=0.039  Sum_probs=129.1

Q ss_pred             eccCCCCEEEEEeCCCCCEEEEe-eCCCcEEEEECCCCceeEEeeec--ccCeEEEecCCCceEEEEeCCCeEEEEEcCC
Q 008496          311 LSKHKGPIFSLKWNKKGDYLLTG-SCDKTAIVWDVKTEEWKQQFEFH--SGPTLDVDWRNNVSFATSSTDNMIYVCKIGE  387 (563)
Q Consensus       311 ~~~h~~~V~~l~~~~~~~~l~s~-s~D~~v~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~  387 (563)
                      +..+...+.+|+|.+..+.|+-. ..++.|...++............  ....+.++|..+..+.+....+.|.++++..
T Consensus        31 ~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg  110 (263)
T d1npea_          31 LHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDG  110 (263)
T ss_dssp             EEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             cccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCC
Confidence            33344557889999888777655 45577888887665443333221  2234678898888888888888999999876


Q ss_pred             CcceeeecCCCcceeEEEECCCCCEEEEEe-CCCcEEEE--eCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEE
Q 008496          388 NRPIKTFAGHQGEVNCVKWDPTGSLLASCS-DDVTAKIW--NMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLIL  464 (563)
Q Consensus       388 ~~~~~~~~~h~~~i~~~~~~~~~~~las~s-~dg~i~iw--d~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l  464 (563)
                      ......+......+..++.+|...++.... ..+..+||  ++............-.....+++.+.+.        .+.
T Consensus       111 ~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~--------~lY  182 (263)
T d1npea_         111 TQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSS--------QLC  182 (263)
T ss_dssp             CSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTT--------EEE
T ss_pred             ceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeeecccccceEEEeecCc--------EEE
Confidence            554333333345688999999777665433 22333454  4444332222222223456788776542        244


Q ss_pred             EEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEE-EEeCCCcEEEEecCCCeeEEEEe
Q 008496          465 ASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLA-SGSLDKSMHIWSLKEGKIVKTYT  530 (563)
Q Consensus       465 ~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~la-sgs~dg~v~iw~~~~~~~~~~~~  530 (563)
                      .+-...+.|...|+........+.+...| .+|++.  +.+|. +=...+.|...|..+++.+..+.
T Consensus       183 w~d~~~~~I~~~~~~g~~~~~v~~~~~~P-~~lav~--~~~lYwtd~~~~~I~~~~~~~g~~~~~~~  246 (263)
T d1npea_         183 WVDAGTHRAECLNPAQPGRRKVLEGLQYP-FAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFH  246 (263)
T ss_dssp             EEETTTTEEEEEETTEEEEEEEEECCCSE-EEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEEC
T ss_pred             EEeCCCCEEEEEECCCCCeEEEECCCCCc-EEEEEE--CCEEEEEECCCCEEEEEECCCCccceEEC
Confidence            45556788988888754443344443334 577775  44454 44466789999998888777663

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=97.60  E-value=0.012  Score=59.06  Aligned_cols=81  Identities=14%  Similarity=0.257  Sum_probs=58.8

Q ss_pred             CeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEecCCCEEE--EEEcCCCC-EE
Q 008496          471 STVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFE--VCWNKEGD-KI  547 (563)
Q Consensus       471 g~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~~~~i~~--l~w~~~g~-~l  547 (563)
                      |.|.-||+.+|+.++..... .+...-..+-.|.++++|+.||.++.||.++|+.+..+....++..  +.|..+|+ +|
T Consensus       457 G~l~AiD~~tGk~~W~~~~~-~p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~GkQYv  535 (573)
T d1kb0a2         457 GRLLAWDPVAQKAAWSVEHV-SPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYV  535 (573)
T ss_dssp             EEEEEEETTTTEEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             ccEEEeCCCCCceEeeecCC-CCCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEE
Confidence            46888999999999887532 2222222334677888899999999999999999999987655432  66777897 55


Q ss_pred             EEEEC
Q 008496          548 AACFA  552 (563)
Q Consensus       548 a~~~~  552 (563)
                      ++...
T Consensus       536 ~v~~G  540 (573)
T d1kb0a2         536 SVAVG  540 (573)
T ss_dssp             EEEEC
T ss_pred             EEEeC
Confidence            55443

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.49  E-value=0.024  Score=56.71  Aligned_cols=81  Identities=15%  Similarity=0.249  Sum_probs=57.7

Q ss_pred             CCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEecCCCEE--EEEEcCCCC-E
Q 008496          470 DSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIF--EVCWNKEGD-K  546 (563)
Q Consensus       470 dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~~~~i~--~l~w~~~g~-~  546 (563)
                      .|.|.-+|+.+|+.+++... ..+..+-..+-.+.++++|+.||.++.+|.++|+.+..+.....+.  -+.+..||+ +
T Consensus       443 ~G~l~AiD~~TG~~~W~~~~-~~~~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P~ty~~dGkqY  521 (571)
T d2ad6a1         443 MGQIRAFDLTTGKAKWTKWE-KFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQY  521 (571)
T ss_dssp             CEEEEEECTTTCCEEEEEEE-SSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred             cccEEEeccCCCceeeEcCC-CCCCCcceeEecCCEEEEECCCCeEEEEECCCCcEEEEEECCCCceecceEEEECCEEE
Confidence            36899999999999887642 1222211122245677889999999999999999999997765544  367777996 5


Q ss_pred             EEEEE
Q 008496          547 IAACF  551 (563)
Q Consensus       547 la~~~  551 (563)
                      ||+..
T Consensus       522 i~v~~  526 (571)
T d2ad6a1         522 IGSMY  526 (571)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            65543

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.46  E-value=0.026  Score=53.06  Aligned_cols=119  Identities=16%  Similarity=0.229  Sum_probs=72.5

Q ss_pred             EEEEECCCCCEEEEeeCCC-----------cEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCC
Q 008496          219 CACAWSPAGSLLASGSGDS-----------TARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT  287 (563)
Q Consensus       219 ~~~~~sp~~~~latgs~D~-----------~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~  287 (563)
                      ...+...+|++++.|+.+.           .+.+||..+++....      .  ....      ++.......++.++|.
T Consensus        23 ~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~------~--~~~~------~~~~~~~~~~~~~~g~   88 (387)
T d1k3ia3          23 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDR------T--VTVT------KHDMFCPGISMDGNGQ   88 (387)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCC------E--EEEC------SCCCSSCEEEECTTSC
T ss_pred             EEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeec------C--CCCC------CcccceeEEEEecCCc
Confidence            3444556788888888421           367899876643210      0  0000      1111123457889999


Q ss_pred             EEEEEeCC-CeEEEEEcCCceeEeeccCC--CCEEEEEeCCCCCEEEEeeCC------CcEEEEECCCCceeE
Q 008496          288 LLATGSYD-GQARIWSTNGDLKCTLSKHK--GPIFSLKWNKKGDYLLTGSCD------KTAIVWDVKTEEWKQ  351 (563)
Q Consensus       288 ~l~sg~~d-g~i~vw~~~~~~~~~~~~h~--~~V~~l~~~~~~~~l~s~s~D------~~v~iwd~~~~~~~~  351 (563)
                      +++.|+.+ ..+.+||.....-..+....  ..-.+.+..++|+.++.|+.+      ..+.+||+.+.+|..
T Consensus        89 i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~  161 (387)
T d1k3ia3          89 IVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTS  161 (387)
T ss_dssp             EEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEE
T ss_pred             EEEeecCCCcceeEecCccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCCceee
Confidence            99998766 58999997654333322111  112345567789988888753      368999999888754

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=97.37  E-value=0.037  Score=55.17  Aligned_cols=81  Identities=17%  Similarity=0.289  Sum_probs=58.3

Q ss_pred             CeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEecCCCEE--EEEEcCCCC-EE
Q 008496          471 STVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIF--EVCWNKEGD-KI  547 (563)
Q Consensus       471 g~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~~~~i~--~l~w~~~g~-~l  547 (563)
                      |.|.-||+.+|+.+..... ..+..+-.++-.|.++++|+.||.++.+|..+|+.+..+....++.  -+.+..+|+ +|
T Consensus       438 G~l~A~D~~tGk~~W~~~~-~~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dGkqyv  516 (560)
T d1kv9a2         438 GALLAWDPVKQKAAWKVPY-PTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYV  516 (560)
T ss_dssp             EEEEEEETTTTEEEEEEEE-SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             cceEEEeCCCCeEeeeccC-CCCCCCceeEECCCEEEEECCCCcEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEE
Confidence            5788899999999887642 2233222233356688889999999999999999999997655443  356677896 56


Q ss_pred             EEEEC
Q 008496          548 AACFA  552 (563)
Q Consensus       548 a~~~~  552 (563)
                      |+...
T Consensus       517 ~v~aG  521 (560)
T d1kv9a2         517 AIMAG  521 (560)
T ss_dssp             EEEEC
T ss_pred             EEEeC
Confidence            65443

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.20  E-value=0.1  Score=52.15  Aligned_cols=79  Identities=15%  Similarity=0.311  Sum_probs=58.2

Q ss_pred             CeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEecCCCEE--EEEEcCCCC-EE
Q 008496          471 STVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIF--EVCWNKEGD-KI  547 (563)
Q Consensus       471 g~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~~~~i~--~l~w~~~g~-~l  547 (563)
                      |.|.-||+.+|+.++... +..++.+-..+-.|.+++.|+.||.++.+|.++|+++..+....++.  -+.+..+|+ +|
T Consensus       453 G~l~A~D~~TG~~~W~~~-~~~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~~~~a~P~tY~~dGkQYv  531 (596)
T d1w6sa_         453 GQIKAYNAITGDYKWEKM-ERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQYV  531 (596)
T ss_dssp             EEEEEECTTTCCEEEEEE-ESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             ceEEEEeCCCCceecccC-CCCCCccceeEecCCEEEEECCCCeEEEEECCCCcEeeEEECCCCcccCCeEEEECCEEEE
Confidence            678899999999988764 22233332334457788889999999999999999999998765543  366777997 55


Q ss_pred             EEE
Q 008496          548 AAC  550 (563)
Q Consensus       548 a~~  550 (563)
                      |+.
T Consensus       532 av~  534 (596)
T d1w6sa_         532 AIY  534 (596)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            544

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.15  E-value=0.074  Score=47.12  Aligned_cols=224  Identities=11%  Similarity=0.061  Sum_probs=133.2

Q ss_pred             eEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEEEee-CCCcEEEEECCCCc---eeEEe-e--ecccCeEEEecCCCc
Q 008496          297 QARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGS-CDKTAIVWDVKTEE---WKQQF-E--FHSGPTLDVDWRNNV  369 (563)
Q Consensus       297 ~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s-~D~~v~iwd~~~~~---~~~~~-~--~~~~~~~~~~~~~~~  369 (563)
                      .|+-.++++.....+......+.++.|++..+.|+-.. ..+.|.--++....   ..... .  ......++++|....
T Consensus        11 ~I~~~~l~~~~~~~~~~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~~   90 (266)
T d1ijqa1          11 EVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSN   90 (266)
T ss_dssp             SEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTE
T ss_pred             eEEEEECCCCcceeeeCCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccce
Confidence            57777877665555544556678999998888776554 45566666554321   11111 1  112234788999999


Q ss_pred             eEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEe--CCCcEEEEeCCCCceeeeecccCCCEEEEE
Q 008496          370 SFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCS--DDVTAKIWNMKQDKYVHDLREHSKEIYTIR  447 (563)
Q Consensus       370 ~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s--~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~  447 (563)
                      .+.+....+.|.++++........+.........++.+|...+|....  ..+.|.-.++............-.....++
T Consensus        91 lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~~~~~p~gl~  170 (266)
T d1ijqa1          91 IYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGIT  170 (266)
T ss_dssp             EEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEE
T ss_pred             EEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceecccccccceeeEEE
Confidence            898888889999999987665555555556688999998655554433  334565566654433322223334567788


Q ss_pred             EccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeE--EEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCee
Q 008496          448 WSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKL--LYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKI  525 (563)
Q Consensus       448 ~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~--~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~  525 (563)
                      +.+.+.        .+..+-+..+.|...++.....  +...........+|++.. +..+.+-..++.|...+..+|+.
T Consensus       171 iD~~~~--------~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~~-~~ly~td~~~~~I~~~~~~~g~~  241 (266)
T d1ijqa1         171 LDLLSG--------RLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE-DKVFWTDIINEAIFSANRLTGSD  241 (266)
T ss_dssp             EETTTT--------EEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEET-TEEEEEETTTTEEEEEETTTCCC
T ss_pred             eecccc--------EEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEEC-CEEEEEECCCCeEEEEECCCCcc
Confidence            876543        2444556677888888764332  222222223345677652 33334444667787777777664


Q ss_pred             EEEE
Q 008496          526 VKTY  529 (563)
Q Consensus       526 ~~~~  529 (563)
                      +..+
T Consensus       242 ~~~~  245 (266)
T d1ijqa1         242 VNLL  245 (266)
T ss_dssp             CEEE
T ss_pred             eEEE
Confidence            4443

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.06  E-value=0.014  Score=54.74  Aligned_cols=147  Identities=12%  Similarity=0.048  Sum_probs=91.2

Q ss_pred             CCCCEEEEEe-CCCcEEEEeCCCCceeeeec-ccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCC---------------
Q 008496          408 PTGSLLASCS-DDVTAKIWNMKQDKYVHDLR-EHSKEIYTIRWSPTGSGTNNPNQQLILASASFD---------------  470 (563)
Q Consensus       408 ~~~~~las~s-~dg~i~iwd~~~~~~~~~~~-~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~d---------------  470 (563)
                      +||++|+... .+.+|-+-|+++.++...+. .....+..++..+.+.      . .+++.++.+               
T Consensus        97 yDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~------T-~YV~~~~e~~vP~pndg~~l~d~~  169 (459)
T d1fwxa2          97 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPR------S-NYVFCNGEDETPLVNDGTNMEDVA  169 (459)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSB------C-SEEEEEECSCEESSCSSSSTTCGG
T ss_pred             cceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCC------e-EEEEccCccccccCCCCccccchh
Confidence            3788876665 47889899998887644222 1233455555554432      1 144444442               


Q ss_pred             ---CeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCC---------------cEEEEec------------
Q 008496          471 ---STVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDK---------------SMHIWSL------------  520 (563)
Q Consensus       471 ---g~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg---------------~v~iw~~------------  520 (563)
                         +.+.++|..+.+..+.+.-- .....+.++|||+++++.+.+.               .+.+++.            
T Consensus       170 ~y~~~~t~ID~~tm~V~~QV~V~-g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~  248 (459)
T d1fwxa2         170 NYVNVFTAVDADKWEVAWQVLVS-GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDY  248 (459)
T ss_dssp             -EEEEEEEEETTTTEEEEEEEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCS
T ss_pred             hcceEEEEEecCCceEEEEeeeC-CChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCc
Confidence               23677899988887766432 3356789999999999877541               2334433            


Q ss_pred             -----------CC---CeeEEEEecCCCEEEEEEcCCCCEEEEEE-CCCeEEEEEee
Q 008496          521 -----------KE---GKIVKTYTGNGGIFEVCWNKEGDKIAACF-ANHTVCVLDFR  562 (563)
Q Consensus       521 -----------~~---~~~~~~~~~~~~i~~l~w~~~g~~la~~~-~~~~v~v~~~~  562 (563)
                                 ++   ...++..........+..+|||+++.++. .+.+|.|+|++
T Consensus       249 ~eingV~VVD~~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~  305 (459)
T d1fwxa2         249 QELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVT  305 (459)
T ss_dssp             EEETTEEEEECSGG--CSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGG
T ss_pred             EEeCCceeecccccCCcceeEEEecCCCCCceEECCCCCEEEEeCCcCCcEEEEEeh
Confidence                       21   01222222223345689999999888774 47789999986

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.00  E-value=0.1  Score=46.07  Aligned_cols=190  Identities=13%  Similarity=0.036  Sum_probs=113.9

Q ss_pred             EEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEE-EEEeCCCcEEEEeCCCCceeeeeccc
Q 008496          361 LDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLL-ASCSDDVTAKIWNMKQDKYVHDLREH  439 (563)
Q Consensus       361 ~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l-as~s~dg~i~iwd~~~~~~~~~~~~~  439 (563)
                      +++++..+..|.+-..++.|+..++........+......+.+++++.-+..| .+-...+.|.+.++........+...
T Consensus        41 ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~  120 (263)
T d1npea_          41 LAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTG  120 (263)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS
T ss_pred             EEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEeccc
Confidence            55677778788887888889988887665544444444567889998755555 45556789999998766543323333


Q ss_pred             CCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEE--eCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEE-eCCCcEE
Q 008496          440 SKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLW--DVELGKLLYSLNGHREPVYSLAFSPTGEYLASG-SLDKSMH  516 (563)
Q Consensus       440 ~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iw--d~~~~~~~~~~~~h~~~i~~l~~spdg~~lasg-s~dg~v~  516 (563)
                      ......++..|...        .+..+-...+..+||  ++............-.....|++.+.+..|..+ ...+.|.
T Consensus       121 l~~p~~l~vdp~~g--------~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~  192 (263)
T d1npea_         121 LVNPRGIVTDPVRG--------NLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAE  192 (263)
T ss_dssp             CSSEEEEEEETTTT--------EEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred             ccCCcEEEEecccC--------cEEEeecCCCCcEEEEecCCCCCceeeeeecccccceEEEeecCcEEEEEeCCCCEEE
Confidence            35677888877543        233332222233344  443222222222222345889999887777554 4567898


Q ss_pred             EEecCCCeeEEEEecCCCEEEEEEcCCCCEEEEE-ECCCeEEEEE
Q 008496          517 IWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAAC-FANHTVCVLD  560 (563)
Q Consensus       517 iw~~~~~~~~~~~~~~~~i~~l~w~~~g~~la~~-~~~~~v~v~~  560 (563)
                      ..++........+.+-...++|+..  +.+|... ..++.|..+|
T Consensus       193 ~~~~~g~~~~~v~~~~~~P~~lav~--~~~lYwtd~~~~~I~~~~  235 (263)
T d1npea_         193 CLNPAQPGRRKVLEGLQYPFAVTSY--GKNLYYTDWKTNSVIAMD  235 (263)
T ss_dssp             EEETTEEEEEEEEECCCSEEEEEEE--TTEEEEEETTTTEEEEEE
T ss_pred             EEECCCCCeEEEECCCCCcEEEEEE--CCEEEEEECCCCEEEEEE
Confidence            8888655443334443446777775  4455544 3455665554

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=96.94  E-value=0.036  Score=51.85  Aligned_cols=223  Identities=13%  Similarity=0.133  Sum_probs=120.1

Q ss_pred             CCCCEEEEee-CCCcEEEEECCCCceeEEeeeccc-CeEEEec--CCCceEEEEeCC-------------------CeEE
Q 008496          325 KKGDYLLTGS-CDKTAIVWDVKTEEWKQQFEFHSG-PTLDVDW--RNNVSFATSSTD-------------------NMIY  381 (563)
Q Consensus       325 ~~~~~l~s~s-~D~~v~iwd~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~d-------------------~~i~  381 (563)
                      +||++|+... .+.+|.+-|+.+.++.+....... ....+..  .++..++.+...                   +.+.
T Consensus        97 yDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t  176 (459)
T d1fwxa2          97 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT  176 (459)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEE
T ss_pred             cceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEE
Confidence            4788876655 678899999999988776544322 1222221  122333333221                   1234


Q ss_pred             EEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCC---------------cEEEEeCC--------------CCce
Q 008496          382 VCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDV---------------TAKIWNMK--------------QDKY  432 (563)
Q Consensus       382 ~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg---------------~i~iwd~~--------------~~~~  432 (563)
                      +.|..+.+......- .+....++++++|+++++.+.+.               .+.++++.              ++-.
T Consensus       177 ~ID~~tm~V~~QV~V-~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eingV~  255 (459)
T d1fwxa2         177 AVDADKWEVAWQVLV-SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVK  255 (459)
T ss_dssp             EEETTTTEEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEE
T ss_pred             EEecCCceEEEEeee-CCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCCce
Confidence            555555443322221 23456789999999988776432               13334331              0101


Q ss_pred             eeeeccc-CCCEEEEEEccCCCC----CCCCCCcEEEEEEeCCCeEEEEeCCCC------------eEEEEecCCCCCEE
Q 008496          433 VHDLREH-SKEIYTIRWSPTGSG----TNNPNQQLILASASFDSTVKLWDVELG------------KLLYSLNGHREPVY  495 (563)
Q Consensus       433 ~~~~~~~-~~~i~~~~~~p~~~~----~~~~~~~~~l~s~s~dg~i~iwd~~~~------------~~~~~~~~h~~~i~  495 (563)
                      +...+.. ...+.  .+-|.+..    ...|+++.+++++..+.++.++|+++-            ....... ....-.
T Consensus       256 VVD~~~~~~~~v~--~yIPVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~e-lglgPL  332 (459)
T d1fwxa2         256 VVDGRKEASSLFT--RYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLGPL  332 (459)
T ss_dssp             EEECSGG--CSSE--EEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCB-CCSCEE
T ss_pred             eecccccCCccee--EEEecCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecc-cCcCcc
Confidence            1111100 11111  11111111    123455678899999999999998631            1111111 222346


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEecCCC----------eeEEEEecCCCEEEE------EEcCCCCEEEEEE
Q 008496          496 SLAFSPTGEYLASGSLDKSMHIWSLKEG----------KIVKTYTGNGGIFEV------CWNKEGDKIAACF  551 (563)
Q Consensus       496 ~l~~spdg~~lasgs~dg~v~iw~~~~~----------~~~~~~~~~~~i~~l------~w~~~g~~la~~~  551 (563)
                      .-+|+..|....|---|.+|.-|++...          .++....-+-.+-.+      .-.|||++|++..
T Consensus       333 ht~fd~~g~aytslfids~v~kw~~~~~~~~~~~~~~~~v~~k~~v~y~~gh~~~~~g~t~~~dgk~l~~~n  404 (459)
T d1fwxa2         333 HTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLS  404 (459)
T ss_dssp             EEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEE
T ss_pred             ccccCCCceEEEEeeccceEEEEecchhhhhhccccCCcceeccccccCCCCCccCcCCcCCCCCCEEEEec
Confidence            6789888876666778999999998532          445555443333333      2478999988874

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.91  E-value=0.25  Score=49.12  Aligned_cols=80  Identities=19%  Similarity=0.461  Sum_probs=59.8

Q ss_pred             CeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEecCCCEE--EEEEcCCCC-EE
Q 008496          471 STVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIF--EVCWNKEGD-KI  547 (563)
Q Consensus       471 g~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~~~~i~--~l~w~~~g~-~l  547 (563)
                      |.|.-+|+.+|+.++....+ .++.+-..+-.|.++++|+.||.++.+|.++|+.+..+....++.  -+.+..+|+ ++
T Consensus       466 G~l~AiD~~TG~i~W~~~~~-~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~qYv  544 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEH-LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYL  544 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEES-SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             CeEEEEcCCCCcEEeecCCC-CCCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEE
Confidence            67888999999999887643 333333344567788889999999999999999999998655442  367778996 55


Q ss_pred             EEEE
Q 008496          548 AACF  551 (563)
Q Consensus       548 a~~~  551 (563)
                      |+..
T Consensus       545 ~i~a  548 (582)
T d1flga_         545 GVTV  548 (582)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            5543

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=96.72  E-value=0.19  Score=49.80  Aligned_cols=229  Identities=13%  Similarity=0.094  Sum_probs=126.9

Q ss_pred             CCEEEEeeCCCcEEEEECCCCceeEEeeeccc---CeEE--EecCCCceEEEEe-----CCCeEEEEEcCCCcceeeecC
Q 008496          327 GDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSG---PTLD--VDWRNNVSFATSS-----TDNMIYVCKIGENRPIKTFAG  396 (563)
Q Consensus       327 ~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~---~~~~--~~~~~~~~~~~~~-----~d~~i~~~~~~~~~~~~~~~~  396 (563)
                      +..++.++.|+.+..-|.++++..-.+.....   ....  -....+..++..+     ..+.|+-+|..+++.+-.+..
T Consensus       115 ~~~i~~~~~~g~l~alda~tG~~~w~~~~~~~~~~~~~t~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t  194 (571)
T d2ad6a1         115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFA  194 (571)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred             CCeEEEEeCCCcEEeeehhhhhhhccccccccccccceeecCeEeCCeEEEeeccccccccCcEEEEECCCCcEEEEEec
Confidence            34678888999999999999987665543210   0000  0011222333222     366788888887766543321


Q ss_pred             C-------------------------------------Ccce-eEEEECCCCCEEEEEeC----------------CCcE
Q 008496          397 H-------------------------------------QGEV-NCVKWDPTGSLLASCSD----------------DVTA  422 (563)
Q Consensus       397 h-------------------------------------~~~i-~~~~~~~~~~~las~s~----------------dg~i  422 (563)
                      .                                     .+.+ ...++++...++..+..                ...+
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg~~~p~~~~~r~g~n~~s~sv  274 (571)
T d2ad6a1         195 TGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTI  274 (571)
T ss_dssp             SSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEE
T ss_pred             cCCcccccccccccccccccCcccccccccCCcccccCCCccccccccchhcCeeeeecccccCccccccccccccccce
Confidence            1                                     0111 23455666666655444                2345


Q ss_pred             EEEeCCCCceeeeecccCCCEEE---------EEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCC---
Q 008496          423 KIWNMKQDKYVHDLREHSKEIYT---------IRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGH---  490 (563)
Q Consensus       423 ~iwd~~~~~~~~~~~~~~~~i~~---------~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h---  490 (563)
                      .-.|.++++.+-.++.....+..         .....++      .....++.++.+|.+.++|..+|+.+......   
T Consensus       275 vAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g------~~~~~v~~~~k~G~l~vlDr~tG~~i~~~~~~~~~  348 (571)
T d2ad6a1         275 WGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNG------KMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAV  348 (571)
T ss_dssp             EEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETT------EEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTC
T ss_pred             eeeeccchhheecccccCccccccccccccceeeeeccC------ccccceeeccccceEEEEecCCCcEeeeeccCCcc
Confidence            56677788776555432221111         1111111      11235778899999999999999987542110   


Q ss_pred             ----------CCCE--------------------------EEEEEcCCCCEEEEEeCC----------------------
Q 008496          491 ----------REPV--------------------------YSLAFSPTGEYLASGSLD----------------------  512 (563)
Q Consensus       491 ----------~~~i--------------------------~~l~~spdg~~lasgs~d----------------------  512 (563)
                                ..++                          ...+|+|+..++.....+                      
T Consensus       349 ~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~p~~~Gg~~w~~~a~dP~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~  428 (571)
T d2ad6a1         349 NVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGAT  428 (571)
T ss_dssp             CSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEE
T ss_pred             cccccccccccccccCcccccccccCceEEEeccccccccccceECCCCceEEEeccccccccccccccccCCccccccc
Confidence                      0000                          125777877666543322                      


Q ss_pred             ---------------CcEEEEecCCCeeEEEEecCCCEEEEEEcCCCCEEEEEECCCeEEEEEe
Q 008496          513 ---------------KSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLDF  561 (563)
Q Consensus       513 ---------------g~v~iw~~~~~~~~~~~~~~~~i~~l~w~~~g~~la~~~~~~~v~v~~~  561 (563)
                                     |.|.-+|+.+|+++..+.......+-.....|..+.+|..|+.+.-+|.
T Consensus       429 ~~~~~~~~~~~~~~~G~l~AiD~~TG~~~W~~~~~~~~~~g~l~TagglVf~G~~dg~l~A~Da  492 (571)
T d2ad6a1         429 LAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALDN  492 (571)
T ss_dssp             EEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEET
T ss_pred             eeeccccCCcccCCcccEEEeccCCCceeeEcCCCCCCCcceeEecCCEEEEECCCCeEEEEEC
Confidence                           4688889999998877654322211112234566777777887777764

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.57  E-value=0.2  Score=49.88  Aligned_cols=230  Identities=13%  Similarity=0.069  Sum_probs=129.0

Q ss_pred             CCEEEEeeCCCcEEEEECCCCceeEEeeeccc---CeEE--EecCCCceEEEEe-----CCCeEEEEEcCCCcceeeecC
Q 008496          327 GDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSG---PTLD--VDWRNNVSFATSS-----TDNMIYVCKIGENRPIKTFAG  396 (563)
Q Consensus       327 ~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~---~~~~--~~~~~~~~~~~~~-----~d~~i~~~~~~~~~~~~~~~~  396 (563)
                      ..+++.++.|+.|.-.|.++++....+.....   ....  -....+..++..+     ..|.|+-+|..+++.+-.+..
T Consensus       121 ~~~v~~~t~dg~l~Alda~tG~~~w~~~~~d~~~~~~~t~~P~v~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~t  200 (596)
T d1w6sa_         121 PALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYA  200 (596)
T ss_dssp             CCEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred             ceEEEEEeCCCCeEeeccccCceeccccccccccccccccCCcEECCeEEEeeccccccccCceEEEECCCCcEEEEeec
Confidence            34788999999999999999998776643211   0000  0011222222221     247888888888776544321


Q ss_pred             C-------------------------------------Cc-ceeEEEECCCCCEEEEEeCC----------------CcE
Q 008496          397 H-------------------------------------QG-EVNCVKWDPTGSLLASCSDD----------------VTA  422 (563)
Q Consensus       397 h-------------------------------------~~-~i~~~~~~~~~~~las~s~d----------------g~i  422 (563)
                      .                                     .. .-..+++++...++..+..+                ..|
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg~~~p~~~~~r~g~n~ys~si  280 (596)
T d1w6sa_         201 TGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTI  280 (596)
T ss_dssp             SSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEE
T ss_pred             cCCccccccccccccccccccccccccccCCCCceecCCCccccccccccCCCeeecccccccccccccccccccccccc
Confidence            0                                     00 11234566666666554332                235


Q ss_pred             EEEeCCCCceeeeecccCCCE---------EEEEE-ccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCC-
Q 008496          423 KIWNMKQDKYVHDLREHSKEI---------YTIRW-SPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHR-  491 (563)
Q Consensus       423 ~iwd~~~~~~~~~~~~~~~~i---------~~~~~-~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~-  491 (563)
                      .-.|.++++.+-.++.....+         .-+.. ..++      ....+++.+..+|.+.++|..+|+++....... 
T Consensus       281 vAlD~~TG~~~W~~Q~~~~D~Wd~d~~~~~~l~d~~~~~G------~~~~~v~~~~k~G~~~vlDr~tG~~i~~~~~~~~  354 (596)
T d1w6sa_         281 FGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDG------KARKLLTHPDRNGIVYTLDRTDGALVSANKLDDT  354 (596)
T ss_dssp             EEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTS------CEEEEEEEECTTSEEEEEETTTCCEEEEEESSTT
T ss_pred             cccccccccccccccceeccccCCccccceeeeecccccc------ccccceeccccccceeeecCCCCceeeecccccc
Confidence            566788887765544321111         11110 0111      123467889999999999999999875432100 


Q ss_pred             ------------CCE--------------------------EEEEEcCCCCEEEEEeC----------------------
Q 008496          492 ------------EPV--------------------------YSLAFSPTGEYLASGSL----------------------  511 (563)
Q Consensus       492 ------------~~i--------------------------~~l~~spdg~~lasgs~----------------------  511 (563)
                                  .++                          ..++++|+..++.....                      
T Consensus       355 ~~~~~~~d~~~~~p~~~~~~~~~~~~~~~~i~pg~~Gg~nw~~~a~dp~~~l~yvp~~~~~~~~~~~~~~~~~g~~~~g~  434 (596)
T d1w6sa_         355 VNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGA  434 (596)
T ss_dssp             CCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCE
T ss_pred             ccccccccccccccccCccccccCCccceeEecccccccccCccccCCCCceEEeccccccccccccccccccccccccc
Confidence                        000                          12466666555443321                      


Q ss_pred             -----------------CCcEEEEecCCCeeEEEEecCCCEEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496          512 -----------------DKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLDFR  562 (563)
Q Consensus       512 -----------------dg~v~iw~~~~~~~~~~~~~~~~i~~l~w~~~g~~la~~~~~~~v~v~~~~  562 (563)
                                       -|.|.-||+.+|+++........+..-..+..|..+.+|..|+.++.+|.+
T Consensus       435 ~~~~~~~~~g~~~~~~~~G~l~A~D~~TG~~~W~~~~~~~~~gg~lsTagglVF~G~~Dg~l~A~Da~  502 (596)
T d1w6sa_         435 TLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGYLKARDSD  502 (596)
T ss_dssp             EEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETT
T ss_pred             ccccccCcccCcccCCCcceEEEEeCCCCceecccCCCCCCccceeEecCCEEEEECCCCeEEEEECC
Confidence                             156888888889887766543332222223467788788889988888753

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.37  E-value=0.44  Score=45.20  Aligned_cols=72  Identities=17%  Similarity=0.255  Sum_probs=44.3

Q ss_pred             CCCCEEEEEEcCCCCEEEEE-eCCC--cEEEEecCCCeeEEEEec-CCCEEEEEEcCCCCEEEEEECC----CeEEEEEe
Q 008496          490 HREPVYSLAFSPTGEYLASG-SLDK--SMHIWSLKEGKIVKTYTG-NGGIFEVCWNKEGDKIAACFAN----HTVCVLDF  561 (563)
Q Consensus       490 h~~~i~~l~~spdg~~lasg-s~dg--~v~iw~~~~~~~~~~~~~-~~~i~~l~w~~~g~~la~~~~~----~~v~v~~~  561 (563)
                      +...+..-.++..+.+|+.. -.++  .|++++..+++....... .+.+..+..+++.+.+...+++    .++.-+|+
T Consensus       333 ~~~~~~~~~~~~~~~~lvl~~~~~~~~~l~v~~~~~~~~~~~~~~~~~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl  412 (430)
T d1qfma1         333 HEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDL  412 (430)
T ss_dssp             CSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEET
T ss_pred             cCcceeeeEEEEECCEEEEEEEcCCEeEEEEEECCCCcEEEecCCCCceEeeccCCCCCCEEEEEEcCCCCCCeEEEEEC
Confidence            44445544555555566654 3454  689999988876555433 3456677777888877776655    44555554

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=96.29  E-value=0.43  Score=44.17  Aligned_cols=118  Identities=13%  Similarity=0.183  Sum_probs=70.4

Q ss_pred             eEEEEECCCCCEEEEeeCC-CcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEEeCC-
Q 008496          218 VCACAWSPAGSLLASGSGD-STARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYD-  295 (563)
Q Consensus       218 V~~~~~sp~~~~latgs~D-~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~d-  295 (563)
                      ..++++.+++.+++.|+.+ ..+.+||..+.......               . ......-.+++..+||++++.|+.+ 
T Consensus        78 ~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~---------------~-~~~~r~~~~~~~~~dG~v~v~GG~~~  141 (387)
T d1k3ia3          78 CPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGP---------------D-MQVARGYQSSATMSDGRVFTIGGSWS  141 (387)
T ss_dssp             SCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECC---------------C-CSSCCSSCEEEECTTSCEEEECCCCC
T ss_pred             eeEEEEecCCcEEEeecCCCcceeEecCccCcccccc---------------c-ccccccccceeeecCCceeeeccccc
Confidence            3466889999999998765 58999997654321100               0 0011122345667799999998754 


Q ss_pred             -----CeEEEEEcCCceeEeecc----------CCC-----CEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeE
Q 008496          296 -----GQARIWSTNGDLKCTLSK----------HKG-----PIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQ  351 (563)
Q Consensus       296 -----g~i~vw~~~~~~~~~~~~----------h~~-----~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~  351 (563)
                           ..+.+||.....-..+..          +..     .-..+.--++|+.++.+..++.+.++|..+..+..
T Consensus       142 ~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~  217 (387)
T d1k3ia3         142 GGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKS  217 (387)
T ss_dssp             SSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEE
T ss_pred             cccccceeeeecCCCCceeecCCCcccccccccccceeeccceeEEEEeCCCCEEEecCcCCcEEecCcccCcEee
Confidence                 368889876543332211          000     00112223567777777777778888887776544

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=96.12  E-value=0.54  Score=46.28  Aligned_cols=229  Identities=14%  Similarity=0.114  Sum_probs=126.1

Q ss_pred             CCEEEEeeCCCcEEEEECCCCceeEEeeecccCe-EEEe----cCCCceEEEE-----eCCCeEEEEEcCCCcceeeecC
Q 008496          327 GDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPT-LDVD----WRNNVSFATS-----STDNMIYVCKIGENRPIKTFAG  396 (563)
Q Consensus       327 ~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~~~-----~~d~~i~~~~~~~~~~~~~~~~  396 (563)
                      +..++.+..|+.|...|..+++.+-.+....... ..+.    ...+..++..     ...+.|+-+|..+++.+-.+..
T Consensus       117 ~~~v~~~~~~g~l~Alda~tG~~~w~~~~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t  196 (560)
T d1kv9a2         117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYT  196 (560)
T ss_dssp             BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEES
T ss_pred             CCeEEEEeCCCEEEEEECCCCcEEeccCccCcccceeeeeeeeeecCcccccccceeccccceEEEEECCCceEEeeeee
Confidence            4568888899999999999998776654322110 0000    0111111111     1235677777777665544321


Q ss_pred             C------------------------------Ccce-eEEEECCCCCEEEEEeC-------------------CCcEEEEe
Q 008496          397 H------------------------------QGEV-NCVKWDPTGSLLASCSD-------------------DVTAKIWN  426 (563)
Q Consensus       397 h------------------------------~~~i-~~~~~~~~~~~las~s~-------------------dg~i~iwd  426 (563)
                      -                              .+.+ ..+++++...++..+..                   ...|.-.|
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~s~D~~~~l~y~~tgn~~~~~~~~~~~~~g~n~~s~sivAld  276 (560)
T d1kv9a2         197 VPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIR  276 (560)
T ss_dssp             SCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEEC
T ss_pred             ccccccCCccccccccccccccccccccccCCCCcccccccccccCeeeecCCCCcccccccccccCCccccceeeEEec
Confidence            0                              0111 13556666666554322                   12355557


Q ss_pred             CCCCceeeeecccCCCEEE---------EEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCC------
Q 008496          427 MKQDKYVHDLREHSKEIYT---------IRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHR------  491 (563)
Q Consensus       427 ~~~~~~~~~~~~~~~~i~~---------~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~------  491 (563)
                      .++++.+-.++.....+..         +....++      ....+++.++.+|.+.++|..+|+++.....-.      
T Consensus       277 ~~tG~~~W~~Q~~~~D~wd~d~~~~~~l~~~~~~g------~~~~~v~~~~k~G~~~~lDr~tG~~i~~~~~~~~~~~~~  350 (560)
T d1kv9a2         277 PDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDG------KPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEK  350 (560)
T ss_dssp             TTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETT------EEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEE
T ss_pred             CCccceeEEEeccccccccccccceeeeeeeecCC------ceeeeeeecCccceEEEEecCCCcccccccccccccccc
Confidence            7777765444332211110         1111111      122467788999999999999999876532100      


Q ss_pred             ------------------CC------------EEEEEEcCCCCEEEEEeC------------------------------
Q 008496          492 ------------------EP------------VYSLAFSPTGEYLASGSL------------------------------  511 (563)
Q Consensus       492 ------------------~~------------i~~l~~spdg~~lasgs~------------------------------  511 (563)
                                        ..            -...+++|+..++..-..                              
T Consensus       351 ~d~~~~~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  430 (560)
T d1kv9a2         351 VDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATD  430 (560)
T ss_dssp             ECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCC
T ss_pred             cChhhccccccccccccccceeeeeccccccccccccccCCCCeeecccccccceeeccccccccccccccccCcccccC
Confidence                              00            014567787766654332                              


Q ss_pred             ------CCcEEEEecCCCeeEEEEecCCCEEEEEEcCCCCEEEEEECCCeEEEEEe
Q 008496          512 ------DKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLDF  561 (563)
Q Consensus       512 ------dg~v~iw~~~~~~~~~~~~~~~~i~~l~w~~~g~~la~~~~~~~v~v~~~  561 (563)
                            .|.|.-||+.+|+++..+........-.....|..+.+|..||.++.||.
T Consensus       431 ~p~~~~~G~l~A~D~~tGk~~W~~~~~~~~~gg~l~TagglVF~G~~dg~l~A~Da  486 (560)
T d1kv9a2         431 VPAAVVSGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGTAAGQMHAYSA  486 (560)
T ss_dssp             CCGGGCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEET
T ss_pred             CCCcccccceEEEeCCCCeEeeeccCCCCCCCceeEECCCEEEEECCCCcEEEEEC
Confidence                  25688899999999888765433322223345667777777888777764

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=96.06  E-value=0.034  Score=51.39  Aligned_cols=161  Identities=11%  Similarity=0.120  Sum_probs=85.6

Q ss_pred             eEEEECCCCCEEEEEeC------------CCcEEEEeCCCCcee-eeecccCCCEEEEEEccCCCC-CCCCCCcEEEEEE
Q 008496          402 NCVKWDPTGSLLASCSD------------DVTAKIWNMKQDKYV-HDLREHSKEIYTIRWSPTGSG-TNNPNQQLILASA  467 (563)
Q Consensus       402 ~~~~~~~~~~~las~s~------------dg~i~iwd~~~~~~~-~~~~~~~~~i~~~~~~p~~~~-~~~~~~~~~l~s~  467 (563)
                      -.+...|+|..+++++.            .|.|.++|+++.... ..+...........|.|.|-. ....++...|++.
T Consensus        38 EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~vv  117 (340)
T d1v04a_          38 EDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVV  117 (340)
T ss_dssp             CEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEEE
T ss_pred             ceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEEE
Confidence            35677888877766542            378888888765331 111111100000011222100 0011223455555


Q ss_pred             e---CCCeEEEEeCCC--CeEEE--EecC-CCCCEEEEEEcCCCCEEEEEe--CC-------------CcEEEEecCCCe
Q 008496          468 S---FDSTVKLWDVEL--GKLLY--SLNG-HREPVYSLAFSPTGEYLASGS--LD-------------KSMHIWSLKEGK  524 (563)
Q Consensus       468 s---~dg~i~iwd~~~--~~~~~--~~~~-h~~~i~~l~~spdg~~lasgs--~d-------------g~v~iw~~~~~~  524 (563)
                      .   ...+|.+|++..  .+..+  ++.. .....++|++..+|.+++|=.  ..             +...+|....++
T Consensus       118 nH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~  197 (340)
T d1v04a_         118 NHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPND  197 (340)
T ss_dssp             ECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSC
T ss_pred             eccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCCc
Confidence            3   346788887643  23322  2221 223478999999999999831  11             223344443443


Q ss_pred             eEEEEecCCCEEEEEEcCCCCEEEEE-ECCCeEEEEEee
Q 008496          525 IVKTYTGNGGIFEVCWNKEGDKIAAC-FANHTVCVLDFR  562 (563)
Q Consensus       525 ~~~~~~~~~~i~~l~w~~~g~~la~~-~~~~~v~v~~~~  562 (563)
                      ......+-...+.++++||++.|.++ +..++|.+|+++
T Consensus       198 ~~~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~  236 (340)
T d1v04a_         198 VRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKH  236 (340)
T ss_dssp             EEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEEC
T ss_pred             eEEEcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeC
Confidence            33233334557899999999988776 456788888764

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.94  E-value=0.47  Score=41.56  Aligned_cols=214  Identities=12%  Similarity=0.014  Sum_probs=116.0

Q ss_pred             CcEEEEECCCCceeEEeeecccCe--EEEecCCCceEEEEeCCCeEEEEEcCCCc----ceeeecCCCcceeEEEECCCC
Q 008496          337 KTAIVWDVKTEEWKQQFEFHSGPT--LDVDWRNNVSFATSSTDNMIYVCKIGENR----PIKTFAGHQGEVNCVKWDPTG  410 (563)
Q Consensus       337 ~~v~iwd~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~d~~i~~~~~~~~~----~~~~~~~h~~~i~~~~~~~~~  410 (563)
                      ..|+..++.+........ ....+  +++++..+..+.+-...+.|+..++....    ....+......+.++++++.+
T Consensus        10 ~~I~~~~l~~~~~~~~~~-~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~   88 (266)
T d1ijqa1          10 HEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIH   88 (266)
T ss_dssp             SSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTT
T ss_pred             CeEEEEECCCCcceeeeC-CCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeecc
Confidence            357777776654433322 22223  34455566666666677777776664321    112222333456788888755


Q ss_pred             CE-EEEEeCCCcEEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecC
Q 008496          411 SL-LASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNG  489 (563)
Q Consensus       411 ~~-las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~  489 (563)
                      .. ..+-...+.|.+.++........+.........++..|...       .++..-.+..+.|.-.++...........
T Consensus        89 ~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g-------~ly~~~~~~~~~I~r~~~dGs~~~~l~~~  161 (266)
T d1ijqa1          89 SNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHG-------FMYWTDWGTPAKIKKGGLNGVDIYSLVTE  161 (266)
T ss_dssp             TEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTT-------EEEEEECSSSCEEEEEETTSCCEEEEECS
T ss_pred             ceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccC-------eEEEeccCCCcceeEeccCCCceeccccc
Confidence            54 45556678899999887665444444455677888877432       12222223344565556553322222222


Q ss_pred             CCCCEEEEEEcCCCCEEEEE-eCCCcEEEEecCCCeeEEEEecC---CCEEEEEEcCCCCEEEEE-ECCCeEEEEE
Q 008496          490 HREPVYSLAFSPTGEYLASG-SLDKSMHIWSLKEGKIVKTYTGN---GGIFEVCWNKEGDKIAAC-FANHTVCVLD  560 (563)
Q Consensus       490 h~~~i~~l~~spdg~~lasg-s~dg~v~iw~~~~~~~~~~~~~~---~~i~~l~w~~~g~~la~~-~~~~~v~v~~  560 (563)
                      .-...+.+++.+.+..|..+ +..+.|...++............   ....+|+..  ++.|..+ ..++.|..+|
T Consensus       162 ~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~--~~~ly~td~~~~~I~~~~  235 (266)
T d1ijqa1         162 NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSAN  235 (266)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEE
T ss_pred             ccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEE--CCEEEEEECCCCeEEEEE
Confidence            33456899999987766655 55678888888654333222221   235566665  3344433 3455555444

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=95.34  E-value=1.5  Score=43.11  Aligned_cols=101  Identities=11%  Similarity=0.050  Sum_probs=66.3

Q ss_pred             EEEEEEeCCCeEEEEeCCCCeEEEEecCCCC-----------------------------------CEEEEEEcCCCCEE
Q 008496          462 LILASASFDSTVKLWDVELGKLLYSLNGHRE-----------------------------------PVYSLAFSPTGEYL  506 (563)
Q Consensus       462 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~-----------------------------------~i~~l~~spdg~~l  506 (563)
                      .+++.++.+|.+.++|..+|+.+........                                   .-..++|+|+..++
T Consensus       328 ~~v~~~~k~G~l~~lDr~tGe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~Gg~~w~~~a~dp~~~~~  407 (573)
T d1kb0a2         328 KVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLV  407 (573)
T ss_dssp             EEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEE
T ss_pred             eeeeeccccceeEEeccccccccccccccccccccccccccceeeeeeccccccceEEeecccCCccccccccCCCcceE
Confidence            3677888999999999999998865431100                                   01124677876665


Q ss_pred             EEEeCC-------------------------------------------CcEEEEecCCCeeEEEEecCCCEEEEEEcCC
Q 008496          507 ASGSLD-------------------------------------------KSMHIWSLKEGKIVKTYTGNGGIFEVCWNKE  543 (563)
Q Consensus       507 asgs~d-------------------------------------------g~v~iw~~~~~~~~~~~~~~~~i~~l~w~~~  543 (563)
                      .....+                                           |.|.-||+.+|+++..+........=.....
T Consensus       408 yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~~~G~l~AiD~~tGk~~W~~~~~~p~~gg~lsta  487 (573)
T d1kb0a2         408 YLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPWNGGTLTTA  487 (573)
T ss_dssp             EEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESSSCCCCEEEET
T ss_pred             EeeccccceeeecccccccccCCCCccccccccccccccccCCCCCCCcccEEEeCCCCCceEeeecCCCCCCCceEEEc
Confidence            543221                                           3577889999998887765433222122346


Q ss_pred             CCEEEEEECCCeEEEEEee
Q 008496          544 GDKIAACFANHTVCVLDFR  562 (563)
Q Consensus       544 g~~la~~~~~~~v~v~~~~  562 (563)
                      |..|.+|..|+.+..+|.+
T Consensus       488 gglVF~G~~dg~l~A~Da~  506 (573)
T d1kb0a2         488 GNVVFQGTADGRLVAYHAA  506 (573)
T ss_dssp             TTEEEEECTTSEEEEEETT
T ss_pred             CCEEEEECCCCeEEEEECC
Confidence            7788888888888888753

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.02  E-value=1  Score=39.52  Aligned_cols=225  Identities=13%  Similarity=0.179  Sum_probs=138.3

Q ss_pred             eCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcC-CCcceeeecCCCc--
Q 008496          323 WNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIG-ENRPIKTFAGHQG--  399 (563)
Q Consensus       323 ~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~-~~~~~~~~~~h~~--  399 (563)
                      .+|..+.|+-=+ ..++.++|+++.+.++.+.+.. ++.=-.|.++..++.. ++..||.|++. ...|++.|..|..  
T Consensus        70 MhP~~~IiALra-g~~LQiFnletK~klks~~~~e-~VvfWkWis~~~L~lV-T~taVYHW~~~g~s~P~k~fdR~~~L~  146 (327)
T d1utca2          70 MNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISLNTVALV-TDNAVYHWSMEGESQPVKMFDRHSSLA  146 (327)
T ss_dssp             ECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSS-CCCEEEESSSSEEEEE-CSSEEEEEESSSSCCCEEEEECCGGGT
T ss_pred             cCCCCcEEEEec-CCeEEEEehhHhhhhceEEcCC-CcEEEEecCCCEEEEE-cCCceEEEcccCCCCchhhhhhccccc
Confidence            467776665444 5689999999999888877765 4445678887776654 35679999994 3568888887753  


Q ss_pred             --ceeEEEECCCCCEEEEEe---C----CCcEEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEe--
Q 008496          400 --EVNCVKWDPTGSLLASCS---D----DVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASAS--  468 (563)
Q Consensus       400 --~i~~~~~~~~~~~las~s---~----dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s--  468 (563)
                        .|..-..+++.++++..+   .    .|.+.+|...... -+.+.+|.+....+..  +|.    +....+++-+.  
T Consensus       147 ~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~-sQ~ieGhaa~F~~~~~--~g~----~~~~~lf~fa~r~  219 (327)
T d1utca2         147 GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASFAQFKM--EGN----AEESTLFCFAVRG  219 (327)
T ss_dssp             TCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTE-EEEECCSEEEEEEECC--TTC----SSCEEEEEEEEEE
T ss_pred             CceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCc-CccccceeeeeEEEEc--CCC----CCCceEEEEEECC
Confidence              466777899999876532   2    3567888876543 3456677654444432  221    11112333322  


Q ss_pred             -CCCeEEEEeCCCC--------eEEEEec----CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEec-CCC
Q 008496          469 -FDSTVKLWDVELG--------KLLYSLN----GHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTG-NGG  534 (563)
Q Consensus       469 -~dg~i~iwd~~~~--------~~~~~~~----~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~-~~~  534 (563)
                       ..+.++|-++...        +....+.    .-.+---++..|+--..+..-+.-|.|++||+.+|.++-.-.- ...
T Consensus       220 ~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~i~lyDleTgt~i~~nRIs~~~  299 (327)
T d1utca2         220 QAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGET  299 (327)
T ss_dssp             TTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSC
T ss_pred             CCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEecCcEEEEEEcccccEEEEeecCCCc
Confidence             2257788777541        1111111    1112234677777777788888999999999999998765443 345


Q ss_pred             EEEEEEcCCCCEEEEEECCCeEE
Q 008496          535 IFEVCWNKEGDKIAACFANHTVC  557 (563)
Q Consensus       535 i~~l~w~~~g~~la~~~~~~~v~  557 (563)
                      |+--+-+.+..-+.+--.+|.|-
T Consensus       300 iF~~a~~~~~~Gi~~VNr~GqVl  322 (327)
T d1utca2         300 IFVTAPHEATAGIIGVNRKGQVL  322 (327)
T ss_dssp             EEEEEEETTTTEEEEEETTSEEE
T ss_pred             eEEeccCCCCceEEEECCCCeEE
Confidence            66444444433333333566553

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.00  E-value=1.5  Score=41.25  Aligned_cols=245  Identities=14%  Similarity=0.148  Sum_probs=119.6

Q ss_pred             CCCCceEEEEECCCCCEEEEe----e-CCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCC
Q 008496          213 GHTSEVCACAWSPAGSLLASG----S-GDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT  287 (563)
Q Consensus       213 ~h~~~V~~~~~sp~~~~latg----s-~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~  287 (563)
                      ++.-.+..+++||+++++|.+    | .-..+++.|+.++....         ..+..         .....++|.+|++
T Consensus       122 ~~~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~---------~~i~~---------~~~~~~~W~~D~~  183 (430)
T d1qfma1         122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELP---------DVLER---------VKFSCMAWTHDGK  183 (430)
T ss_dssp             SSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEE---------EEEEE---------ECSCCEEECTTSS
T ss_pred             cccceecceEecCCCCEEEEEeccccCchheeEEeccCcceecc---------ccccc---------ccccceEEcCCCC
Confidence            343345567889999987743    2 23479999998764211         01110         0124578999999


Q ss_pred             EEEEEeCC----------------CeEEEEEcCCc---eeEeeccC--CCCEEEEEeCCCCCEEEEeeC---CCcEEEE-
Q 008496          288 LLATGSYD----------------GQARIWSTNGD---LKCTLSKH--KGPIFSLKWNKKGDYLLTGSC---DKTAIVW-  342 (563)
Q Consensus       288 ~l~sg~~d----------------g~i~vw~~~~~---~~~~~~~h--~~~V~~l~~~~~~~~l~s~s~---D~~v~iw-  342 (563)
                      .|+-...+                ..+..|.+...   -...+...  ..-+..+..++++++++....   +....+| 
T Consensus       184 ~~~Y~~~~~~~~~~~~~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~  263 (430)
T d1qfma1         184 GMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWY  263 (430)
T ss_dssp             EEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEE
T ss_pred             EEEEEEeccccCcccccccccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEE
Confidence            88765433                24666665432   12233332  234667788999998764332   3344454 


Q ss_pred             -ECCCCc--------eeEEeeecccCeEEEecCCCceEEEEe---CCCeEEEEEcCCCcc--eee-ecCCCcceeEEEEC
Q 008496          343 -DVKTEE--------WKQQFEFHSGPTLDVDWRNNVSFATSS---TDNMIYVCKIGENRP--IKT-FAGHQGEVNCVKWD  407 (563)
Q Consensus       343 -d~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~---~d~~i~~~~~~~~~~--~~~-~~~h~~~i~~~~~~  407 (563)
                       |+....        +...+........-+...++..++...   .++.|...++.....  ... +..+...+..-.+.
T Consensus       264 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~  343 (430)
T d1qfma1         264 CDLQQESNGITGILKWVKLIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVAC  343 (430)
T ss_dssp             EEGGGSSSSSCSSCCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEE
T ss_pred             eeCCCcccccccccceeEeecccccceEEEecCCceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeEEE
Confidence             433211        111111111112222223333333332   235666666654322  122 33344444333333


Q ss_pred             CCCCEEE-EEeCCC--cEEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeC--CCeEEEEeCCCCe
Q 008496          408 PTGSLLA-SCSDDV--TAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASF--DSTVKLWDVELGK  482 (563)
Q Consensus       408 ~~~~~la-s~s~dg--~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~--dg~i~iwd~~~~~  482 (563)
                      ..+.+|+ +-..++  .|++++..++.....+....+.+..+...+..       ...++...|.  -.++.-+|+.+++
T Consensus       344 ~~~~~lvl~~~~~~~~~l~v~~~~~~~~~~~~~~~~~sv~~~~~~~~~-------~~~~~~~ss~~tP~~~y~~Dl~t~~  416 (430)
T d1qfma1         344 VRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKD-------TEIFYQFTSFLSPGIIYHCDLTKEE  416 (430)
T ss_dssp             ETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTC-------SEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             EECCEEEEEEEcCCEeEEEEEECCCCcEEEecCCCCceEeeccCCCCC-------CEEEEEEcCCCCCCeEEEEECCCCC
Confidence            3444554 444555  47788888776544333333334333222211       1233333332  2567777777664

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.77  E-value=0.91  Score=41.80  Aligned_cols=138  Identities=9%  Similarity=0.079  Sum_probs=87.0

Q ss_pred             ceeEEEECCCCCEEEEEeCCCcEEEEeCCC---------CceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCC
Q 008496          400 EVNCVKWDPTGSLLASCSDDVTAKIWNMKQ---------DKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFD  470 (563)
Q Consensus       400 ~i~~~~~~~~~~~las~s~dg~i~iwd~~~---------~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~d  470 (563)
                      ..+-+++++...+++.|+.++ ++|-....         .......+..-..|..++|+-+           .|+.. .+
T Consensus        38 ~~~LLAVsn~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~~ip~v~~vafs~d-----------~l~v~-~~  104 (381)
T d1xipa_          38 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPDVIFVCFHGD-----------QVLVS-TR  104 (381)
T ss_dssp             CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTTEEEEEEETT-----------EEEEE-ES
T ss_pred             ccceEEEeCCCCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcceeccCCCCeEEEEeeCC-----------EEEEE-eC
Confidence            456788888888898888885 56665311         0000011111235777888643           23333 45


Q ss_pred             CeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEE------EecCCCEEEEEEcCCC
Q 008496          471 STVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKT------YTGNGGIFEVCWNKEG  544 (563)
Q Consensus       471 g~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~------~~~~~~i~~l~w~~~g  544 (563)
                      +.+..++...-........-..++.++.++|.  .++....++.+.++++.+++....      +.-.+.+..++|++.|
T Consensus       105 ~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~kg  182 (381)
T d1xipa_         105 NALYSLDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKDRS  182 (381)
T ss_dssp             SEEEEEESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEETTSC
T ss_pred             CCEEEEEeeccccccccccccccccceecCCc--eeEEEecCCCEEEEEeccCccccccCCcceEEecCCceEEEEeCCc
Confidence            66777877654333333334567888998886  566677889999999998864322      2224567888999888


Q ss_pred             CEEEEEEC
Q 008496          545 DKIAACFA  552 (563)
Q Consensus       545 ~~la~~~~  552 (563)
                      +.++++.+
T Consensus       183 kq~v~~~g  190 (381)
T d1xipa_         183 FQSFAWRN  190 (381)
T ss_dssp             EEEEEEET
T ss_pred             EEEEEeCC
Confidence            88888743

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.88  E-value=1.9  Score=37.79  Aligned_cols=229  Identities=12%  Similarity=0.155  Sum_probs=124.3

Q ss_pred             ECCCCCEEEEEeCCCeEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCC-ceeEEeeeccc--
Q 008496          282 WNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTE-EWKQQFEFHSG--  358 (563)
Q Consensus       282 ~s~~g~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~-~~~~~~~~~~~--  358 (563)
                      .+|..+.||.-+ ...+.+++++.+.+..-.....+|.--+|-.+...-+..  +..|.-|++... ...+.|..|..  
T Consensus        70 MhP~~~IiALra-g~~LQiFnletK~klks~~~~e~VvfWkWis~~~L~lVT--~taVYHW~~~g~s~P~k~fdR~~~L~  146 (327)
T d1utca2          70 MNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVT--DNAVYHWSMEGESQPVKMFDRHSSLA  146 (327)
T ss_dssp             ECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSSCCCEEEESSSSEEEEEC--SSEEEEEESSSSCCCEEEEECCGGGT
T ss_pred             cCCCCcEEEEec-CCeEEEEehhHhhhhceEEcCCCcEEEEecCCCEEEEEc--CCceEEEcccCCCCchhhhhhccccc
Confidence            466667777665 458999999876554433445677778887665433332  458999998542 34555555542  


Q ss_pred             --CeEEEecCCCce-EE---EEeCC----CeEEEEEcCCCcceeeecCCCcceeEEEECCCC---CEEEEEe---CCCcE
Q 008496          359 --PTLDVDWRNNVS-FA---TSSTD----NMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTG---SLLASCS---DDVTA  422 (563)
Q Consensus       359 --~~~~~~~~~~~~-~~---~~~~d----~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~---~~las~s---~dg~i  422 (563)
                        .++...-..+.. ++   .+..+    |.+.+|..... .-+.+.||.+....+...-+.   ++++-+.   ..+.+
T Consensus       147 ~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~-~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kL  225 (327)
T d1utca2         147 GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKL  225 (327)
T ss_dssp             TCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT-EEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEE
T ss_pred             CceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccC-cCccccceeeeeEEEEcCCCCCCceEEEEEECCCCCcEE
Confidence              233322222222 11   12223    44566766543 346678887665555443211   2333332   23567


Q ss_pred             EEEeCCCCceeeeecccCCCEEEEEEccCCCCCCC-----CCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEE
Q 008496          423 KIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNN-----PNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSL  497 (563)
Q Consensus       423 ~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~-----~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l  497 (563)
                      +|-++.+...-  -.........+-|.|+....+.     ....-++..-+.-|.|.++|++++.+++.-+-...+|...
T Consensus       226 hIiEig~~~~g--~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~i~lyDleTgt~i~~nRIs~~~iF~~  303 (327)
T d1utca2         226 HIIEVGTPPTG--NQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVT  303 (327)
T ss_dssp             EEEECSCCCTT--CCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEE
T ss_pred             EEEEcCCCccC--CCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEecCcEEEEEEcccccEEEEeecCCCceEEe
Confidence            77776542100  0011122233334443221110     0011144555688999999999999999877767777766


Q ss_pred             EEcCCCCEEEEEeCCCcEE
Q 008496          498 AFSPTGEYLASGSLDKSMH  516 (563)
Q Consensus       498 ~~spdg~~lasgs~dg~v~  516 (563)
                      +-+.+..-++.-..+|.|.
T Consensus       304 a~~~~~~Gi~~VNr~GqVl  322 (327)
T d1utca2         304 APHEATAGIIGVNRKGQVL  322 (327)
T ss_dssp             EEETTTTEEEEEETTSEEE
T ss_pred             ccCCCCceEEEECCCCeEE
Confidence            6555544455555666654

>d1uuja_ a.221.1.1 (A:) Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
superfamily: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
family: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
domain: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.84  E-value=0.013  Score=39.75  Aligned_cols=30  Identities=30%  Similarity=0.431  Sum_probs=28.2

Q ss_pred             cchhhhhHHHHHhcCCceehhccccccCCc
Q 008496            7 EELNYLVFRYLQESGLLHSAFVLGYEAGIN   36 (563)
Q Consensus         7 ~evN~Li~rYlqE~g~~~sA~~~~~E~~~~   36 (563)
                      +|||.=|..||+..||..+|-+|+.|..++
T Consensus         8 eeL~kaI~~Yl~~~~~~~~~~~l~~e~~l~   37 (76)
T d1uuja_           8 DELNRAIADYLRSNGYEEAYSVFKKEAELD   37 (76)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHHCCcHHHHHHHHHHHCCC
Confidence            799999999999999999999999998765

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=92.05  E-value=4.1  Score=38.31  Aligned_cols=54  Identities=7%  Similarity=0.143  Sum_probs=38.4

Q ss_pred             cceeEEEECCCCCEEEEEeCCCcEEEEeCCCCcee--eeec------ccCCCEEEEEEccCC
Q 008496          399 GEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYV--HDLR------EHSKEIYTIRWSPTG  452 (563)
Q Consensus       399 ~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~--~~~~------~~~~~i~~~~~~p~~  452 (563)
                      ...++|+|.|++++|++--..|.|++++..++...  ..+.      .-......|+++|+-
T Consensus        27 ~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf   88 (450)
T d1crua_          27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDF   88 (450)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTT
T ss_pred             CCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCC
Confidence            45679999999999987766899999987766432  2221      123457889999863

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.01  E-value=6  Score=38.55  Aligned_cols=49  Identities=12%  Similarity=0.082  Sum_probs=34.7

Q ss_pred             CcEEEEecCCCeeEEEEecCCCEEEEEEcCCCCEEEEEECCCeEEEEEe
Q 008496          513 KSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLDF  561 (563)
Q Consensus       513 g~v~iw~~~~~~~~~~~~~~~~i~~l~w~~~g~~la~~~~~~~v~v~~~  561 (563)
                      |.|.-+|+.+|+++..+.....++.-..+..|..+.+|..|+.+..||.
T Consensus       466 G~l~AiD~~TG~i~W~~~~~~p~~~g~lstagglVF~Gt~dg~l~A~Da  514 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDA  514 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEET
T ss_pred             CeEEEEcCCCCcEEeecCCCCCCccceeEEcCCeEEEeCCCCeEEEEEC
Confidence            5788899999998888765443332223456778888888888887774

>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: beta-lactamase inhibitor protein-II, BLIP-II
domain: beta-lactamase inhibitor protein-II, BLIP-II
species: Streptomyces exfoliatus [TaxId: 1905]

Probab=90.67  E-value=3.6  Score=35.58  Aligned_cols=184  Identities=13%  Similarity=-0.010  Sum_probs=82.8

Q ss_pred             CCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceee
Q 008496          314 HKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKT  393 (563)
Q Consensus       314 h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~  393 (563)
                      ....|..|+--  ..+.+.-. ||.|..|-......+..-......+..+.--....++.  .|+.++.|..........
T Consensus        24 ~~~~i~~va~G--~~h~~al~-dG~v~~wG~N~~GQlG~~~~~~~~v~~v~~G~~~~~al--~dg~v~~wG~~~~gq~~~   98 (273)
T d1jtdb_          24 AQSGVDAIAGG--YFHGLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYHSLAL--KDGEVIAWGGNEDGQTTV   98 (273)
T ss_dssp             GSSSEEEEEEC--SSEEEEEE-TTEEEEEECCTTSTTSCCGGGGSCCCEEEECSSEEEEE--ETTEEEEEECCTTSTTCC
T ss_pred             CCCCcEEEEcc--CCEEEEEE-CCEEEEEeCCCCCceeeeecccccceEEecCCCceeee--eeeeeeccCCCcceeecc
Confidence            34567777652  23444445 89999996543221111111122233333333333333  478898887643322111


Q ss_pred             ecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeE
Q 008496          394 FAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTV  473 (563)
Q Consensus       394 ~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i  473 (563)
                      ...-...+..++.....  .+. -.|+.+..|.................|..+.-...          ..+  ...++.+
T Consensus        99 ~~~~~~~~~~i~~~~~~--~~~-~~dg~v~~~g~~~~~~~~~~~~~~~~v~~~~~~~~----------~~~--~~~~g~~  163 (273)
T d1jtdb_          99 PAEARSGVDAIAAGAWA--SYA-LKDGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVY----------TAL--AVKNGGV  163 (273)
T ss_dssp             CGGGGSSCCEEEEETTE--EEE-EETTEEEEEECCTTSTTSCCGGGGSSEEEEEECSS----------EEE--EEETTEE
T ss_pred             ccccccceeEEeeeccc--ccc-cccccceecccCCCCceeeeccCCceEEEEeccce----------eee--eecccce
Confidence            11112234444443222  222 24788999975433221111112233444432211          122  2347888


Q ss_pred             EEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEec
Q 008496          474 KLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSL  520 (563)
Q Consensus       474 ~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~  520 (563)
                      ..|-......+.........|..|+....- .++ -. ||.|+.|=.
T Consensus       164 ~~~G~~~~g~~~~~~~~~~~v~~Is~G~~h-~~~-l~-dG~v~~WG~  207 (273)
T d1jtdb_         164 IAWGDNYFGQTTVPAEAQSGVDDVAGGIFH-SLA-LK-DGKVIAWGD  207 (273)
T ss_dssp             EEEECCTTSTTSCCGGGSSSEEEEEECSSE-EEE-EE-TTEEEEEEC
T ss_pred             eEeecccCCcccccccccCCccceecccee-eEE-Ee-cCcEEEcCC
Confidence            888654221111111233457777654332 222 23 788888854

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=90.07  E-value=6.3  Score=35.33  Aligned_cols=60  Identities=17%  Similarity=0.258  Sum_probs=37.9

Q ss_pred             CCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCe---EEEEecCCCCCEEEEEEcC-CCCEEEEE
Q 008496          441 KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK---LLYSLNGHREPVYSLAFSP-TGEYLASG  509 (563)
Q Consensus       441 ~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~---~~~~~~~h~~~i~~l~~sp-dg~~lasg  509 (563)
                      ..-..|+++|++.        .++++-+..+.|+.|++....   ....+. -....-.+.+.+ +|.+.+++
T Consensus       206 ~~pNGI~~s~d~~--------~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~-l~~~pDNi~~d~~~g~lwva~  269 (340)
T d1v04a_         206 DFANGINISPDGK--------YVYIAELLAHKIHVYEKHANWTLTPLRVLS-FDTLVDNISVDPVTGDLWVGC  269 (340)
T ss_dssp             SSEEEEEECTTSS--------EEEEEEGGGTEEEEEEECTTSCEEEEEEEE-CSSEEEEEEECTTTCCEEEEE
T ss_pred             CccceeEECCCCC--------EEEEEeCCCCeEEEEEeCCCcccceEEEec-CCCCCCccEEecCCCEEEEEE
Confidence            3457788888764        577778888999999886432   222222 234467788876 45555544

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=89.57  E-value=7  Score=35.14  Aligned_cols=144  Identities=17%  Similarity=0.318  Sum_probs=88.1

Q ss_pred             CCCCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEEEEEcc----CCCCCCCCCCcEEEEEEe--CC--CeEEEEeCC
Q 008496          408 PTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSP----TGSGTNNPNQQLILASAS--FD--STVKLWDVE  479 (563)
Q Consensus       408 ~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p----~~~~~~~~~~~~~l~s~s--~d--g~i~iwd~~  479 (563)
                      |...+++.....+-|.+||+. ++.+..+.  .+.+..|....    .+.       ..-++.++  .+  .+|.+|.+.
T Consensus        38 p~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~--~Gr~NNVDvr~~~~l~~~-------~~di~vasnR~~~~~~l~~~~id  107 (353)
T d1h6la_          38 PQNSKLITTNKKSGLAVYSLE-GKMLHSYH--TGKLNNVDIRYDFPLNGK-------KVDIAAASNRSEGKNTIEIYAID  107 (353)
T ss_dssp             GGGCEEEEEETTSCCEEEETT-CCEEEECC--SSCEEEEEEEEEEEETTE-------EEEEEEEEECCTTTCEEEEEEEE
T ss_pred             cCccEEEEEcCcCCEEEEcCC-CcEEEecc--cCCcCccccccccccCCc-------ceEEEEEeCCcCcceeEEEEEec
Confidence            456677777777779999986 55554442  34555544321    111       11233343  22  367788764


Q ss_pred             -CCeEEEEecCCC-------CCEEEEEE--cCC-CC-EEEEEeCCCcEEEEec---CCC----eeEEEEecCCCEEEEEE
Q 008496          480 -LGKLLYSLNGHR-------EPVYSLAF--SPT-GE-YLASGSLDKSMHIWSL---KEG----KIVKTYTGNGGIFEVCW  540 (563)
Q Consensus       480 -~~~~~~~~~~h~-------~~i~~l~~--spd-g~-~lasgs~dg~v~iw~~---~~~----~~~~~~~~~~~i~~l~w  540 (563)
                       ....+..+....       ..++.+|+  +|. |. ++++...+|.+..|.+   .++    ++++++.....+-.+.+
T Consensus       108 ~~~~~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~~q~EGCVv  187 (353)
T d1h6la_         108 GKNGTLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMNSQTEGMAA  187 (353)
T ss_dssp             TTTTEEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECSSCEEEEEE
T ss_pred             CcccccccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCCCccceEEE
Confidence             223344443221       23667777  665 54 4566777899988876   233    46677777777888999


Q ss_pred             cCCCCEEEEEECCCeEEEEEe
Q 008496          541 NKEGDKIAACFANHTVCVLDF  561 (563)
Q Consensus       541 ~~~g~~la~~~~~~~v~v~~~  561 (563)
                      +.+..+|.++-.+..+..++.
T Consensus       188 Dde~~~LyisEE~~Giw~~~a  208 (353)
T d1h6la_         188 DDEYGSLYIAEEDEAIWKFSA  208 (353)
T ss_dssp             ETTTTEEEEEETTTEEEEEES
T ss_pred             eCCCCcEEEecCccceEEEEe
Confidence            999999999988766655543

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=86.57  E-value=11  Score=33.82  Aligned_cols=198  Identities=17%  Similarity=0.263  Sum_probs=98.8

Q ss_pred             CCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEEeC--C--CeEEE
Q 008496          225 PAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSY--D--GQARI  300 (563)
Q Consensus       225 p~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~--d--g~i~v  300 (563)
                      |+.++++.....+-+.+|++. |+.......+..+...++             ..+........++.++.  +  ..|.+
T Consensus        38 p~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~~Gr~NNVDvr-------------~~~~l~~~~~di~vasnR~~~~~~l~~  103 (353)
T d1h6la_          38 PQNSKLITTNKKSGLAVYSLE-GKMLHSYHTGKLNNVDIR-------------YDFPLNGKKVDIAAASNRSEGKNTIEI  103 (353)
T ss_dssp             GGGCEEEEEETTSCCEEEETT-CCEEEECCSSCEEEEEEE-------------EEEEETTEEEEEEEEEECCTTTCEEEE
T ss_pred             cCccEEEEEcCcCCEEEEcCC-CcEEEecccCCcCccccc-------------cccccCCcceEEEEEeCCcCcceeEEE
Confidence            345677766777779999985 443222222222222211             11222223333455542  2  35777


Q ss_pred             EEcCC--ceeEeeccC-------CCCEEEEEe--CCC-CC-EEEEeeCCCcEEEEECC---CCc----eeEEeeecccCe
Q 008496          301 WSTNG--DLKCTLSKH-------KGPIFSLKW--NKK-GD-YLLTGSCDKTAIVWDVK---TEE----WKQQFEFHSGPT  360 (563)
Q Consensus       301 w~~~~--~~~~~~~~h-------~~~V~~l~~--~~~-~~-~l~s~s~D~~v~iwd~~---~~~----~~~~~~~~~~~~  360 (563)
                      |..++  .....+...       ...++++|+  ++. |. +++....+|.+..|.+.   .+.    .++.|......-
T Consensus       104 ~~id~~~~~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~~q~E  183 (353)
T d1h6la_         104 YAIDGKNGTLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMNSQTE  183 (353)
T ss_dssp             EEEETTTTEEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECSSCEE
T ss_pred             EEecCcccccccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCCCccc
Confidence            77543  222222211       124677777  654 43 56667778999888663   222    233333322211


Q ss_pred             EEEecCCCceEEEEeCCCeEEEEEcCCC-----cceeeecC--CCcceeEEEEC--CC--CCEEEEEeCCCcEEEEeCCC
Q 008496          361 LDVDWRNNVSFATSSTDNMIYVCKIGEN-----RPIKTFAG--HQGEVNCVKWD--PT--GSLLASCSDDVTAKIWNMKQ  429 (563)
Q Consensus       361 ~~~~~~~~~~~~~~~~d~~i~~~~~~~~-----~~~~~~~~--h~~~i~~~~~~--~~--~~~las~s~dg~i~iwd~~~  429 (563)
                      -|+.=..+..+..+-.+..|+.++....     ..+....+  ..+.+-.|+.-  .+  |-+|||.-.+.+..|||...
T Consensus       184 GCVvDde~~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~  263 (353)
T d1h6la_         184 GMAADDEYGSLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQG  263 (353)
T ss_dssp             EEEEETTTTEEEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESST
T ss_pred             eEEEeCCCCcEEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCC
Confidence            1222223345555566666776665432     11212222  24566677653  23  33556666688999999765


Q ss_pred             C-ceeeee
Q 008496          430 D-KYVHDL  436 (563)
Q Consensus       430 ~-~~~~~~  436 (563)
                      . ..+..|
T Consensus       264 ~~~~~g~F  271 (353)
T d1h6la_         264 QNKYVADF  271 (353)
T ss_dssp             TCCEEEEE
T ss_pred             CccccceE
Confidence            3 444444

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=81.82  E-value=20  Score=33.19  Aligned_cols=52  Identities=10%  Similarity=0.158  Sum_probs=36.7

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCeEEEEEcCCceeEeec---------cCCCCEEEEEeCCC
Q 008496          275 KDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLS---------KHKGPIFSLKWNKK  326 (563)
Q Consensus       275 ~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~~~~~~---------~h~~~V~~l~~~~~  326 (563)
                      ..-++|+|.|+|++|++--..|.|++++..+.....+.         .-.+....|+++|+
T Consensus        27 ~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             CCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence            34689999999998887656799999986543322211         12356789999985