Citrus Sinensis ID: 008524

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560---

MNQVRRWQRISILALLSVSVIAPVIFVSNRLKVFTSIGRWDFAEELSTTKFRAENIRLNAIEQEADEGLKEPKLVVYKDEDLGSLVSYSTSTESDTKQSQYAGDTNILENNGTDEGKEENKKMKQKTASSGSRGKDQTNQAGARRSPNVQASLLRVSDEKIKEMKDQVIRAQAYLNFAPPGSNSHLVKELKLRIKEVERAVGAATKDSDLSRRAFRRMNQMEATLDKASHVYPDCSAMATKLRAMTYNAEERVRLQKNQATYLVQLASRTTPKGLHCLSMQLTAEYFALQPEERHLPNQQDLHNPDLHHYAVFSDNVLACAVVVNSTVSFAKEPEKIVFHVVTDSLNLPAISMWFLLNPPGKATIQIQSIDNFNWLSTKYNATLKKENSHDPRYTSALNHLRFYLPDVFPALNKVLLFDHDVVVQSDLGRLWNIDMKGKVIGAVDTCKESEASFRRMDLFINFSDPLIAKKFDVKACTWAFGMNLFDLQEWRKRKLTAVYHKYLQLVCEYLRFCLNLHFLALLIASLCYLLEQYILVYHNILNDYLQVSCDTNSPIRIFFFFF

ccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccEEccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHcccccccccccccccccccEEEEEEcccHHHHHHHHEEEcccccccccEEEEEEEccccHHHHHHHHHcccccccEEEEEEcccccccccccccccccccccccccccHHHHHHHHcccccccccEEEEEEccEEEEcccHHHHcccccccEEEEEEccccHHHHHHHHHcccccccHHHHccccccccccccccccccHHHHHHHcHHHHHHHHHHHHHccccccccccHHHHccccEEEEcccHHHHHHHHccccEEccccccccEEEEEEEc

ccccccHHHHHHHHHHHHHHHHHHHHEHccccccccccccccHHHHHccccccccccccccccccccccccccEEEEcccccccccccccccccccHccccccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHccHHHcccccHHHccccccEEEEEEcccEEEEEEEEHHHHHcccccccEEEEEEEccccHHHHHHHHHHccccccEEEEEEcccccccccccHHHHHHHHcccHHHHHHHHHHHHHHHHHcHHccEEEEEcccEEEEEccccHHcEcccccEEEEEEEccccccccccHHHHcccccHHHHHcccHHHHHHHccccEEcHHHHHHHcHHHHHHHHHHHHHHHccccccEEccccccccHEEEEccccccccHHHHHHHEEEccccccEEEEEEEc

MNQVRRWQRISILALLSVSVIAPVIFVSNRLKVFTSIGRWDFAEELSTTKFRAENIRLNAIEQEadeglkepklvvykdedlgslvsyststesdtkqsqyagdtnilenngtdegkeeNKKMKqktassgsrgkdqtnqagarrspnvqaSLLRVSDEKIKEMKDQVIRAQAYlnfappgsnshLVKELKLRIKEVERAvgaatkdsdlSRRAFRRMNQMEATLDkashvypdcsaMATKLRAMTYNAEERVRLQKNQATYLVQLAsrttpkglhclsMQLTAEYFalqpeerhlpnqqdlhnpdlhhyavfSDNVLACAVVVNStvsfakepeKIVFHVVTdslnlpaiSMWFllnppgkatiqIQSIDNFNWLSTKYNAtlkkenshdprytsALNHLRFYLPDVFPALNkvllfdhdvvvqsdlgrlwnidmkgKVIGAVDTCKESEASFRRMdlfinfsdpliakkfdvKACTWAFGMNLFDLQEWRKRKLTAVYHKYLQLVCEYLRFCLNLHFLALLIASLCYLLEQYILVYHNILNDylqvscdtnspirifffff

MNQVRRWQRISILALLSVSVIAPVIFVSNRLKVFTSIGRWdfaeelsttkfraenIRLNAIeqeadeglkepklvvykdedlgSLVSYststesdtkqsqyagdtnilenngtdegkeenkkmkqktassgsrgkdqtnqagarrspnvqasllrVSDEKIKEMKDQVIRAQAYlnfappgsnsHLVKELKLRIKEVEravgaatkdsdlsrraFRRMNQMEatldkashvypDCSAMATKLRAMTYNAEERVRLQKNQATYLVQLASRTTPKGLHCLSMQLTAEYFALQPEERHLPNQQDLHNPDLHHYAVFSDNVLACAVVVNSTVSFAKEPEKIVFHVVTDSLNLPAISMWFLLNPPGKATIQIQSIDNFNWLSTKYNATLKKENSHDPRYTSALNHLRFYLPDVFPALNKVLLFDHDVVVQSDLgrlwnidmkgkVIGAVDTCKESEASFRRMDLFINFSDPLIAKKFDVKACTWAFGMNLFDLQEWRKRKLTAVYHKYLQLVCEYLRFCLNLHFLALLIASLCYLLEQYILVYHNILNDYLQVSCDTNSPIRIFFFFF

****RRWQRISILALLSVSVIAPVIFVSNRLKVFTSIGRWDFAEELSTTKFRAENIRLNAIE**********KLVVYK*****************************************************************************************VIRAQAYLNFA******HLVKELKLRIK**********************************HVYPDCSAMATKLRAMTYNAEERVRLQKNQATYLVQLASRTTPKGLHCLSMQLTAEYFALQ***********LHNPDLHHYAVFSDNVLACAVVVNSTVSFAKEPEKIVFHVVTDSLNLPAISMWFLLNPPGKATIQIQSIDNFNWLSTKYNATLKK****DPRYTSALNHLRFYLPDVFPALNKVLLFDHDVVVQSDLGRLWNIDMKGKVIGAVDTCKESEASFRRMDLFINFSDPLIAKKFDVKACTWAFGMNLFDLQEWRKRKLTAVYHKYLQLVCEYLRFCLNLHFLALLIASLCYLLEQYILVYHNILNDYLQVSCDTNSPIRIFFFF*

****RRWQRISILALLSVSVIAPVIFVSNRLKV*****************************************************************************************************************************EKIKEMKDQVIRAQAYLNFAPPGSNSHLVKELKLRI*************************QMEATLDKASHVYPDCSAMATKLRAMTYNAEE***LQKNQATYLVQLASRTTPKGLHCLSMQLTAEY*******************DLHHYAVFSDNVLACAVVVNSTVSFAKEPEKIVFHVVTDSLNLPAISMWFLLNPPGKATIQIQSIDNFNWLSTKYNATLKKENSHDPRYTSALNHLRFYLPDVFPALNKVLLFDHDVVVQSDLGRLWNIDMKGKVIGAVDTCKESEASFRRMDLFINFSDPLIAKKFDVKACTWAFGMNLFDLQEWRKRKLTAVYHKYLQLVCEYLRFCLNLHFLALLIASLCYLLEQYILVYHNILNDYLQVSCDTNSPIRIFFFFF

MNQVRRWQRISILALLSVSVIAPVIFVSNRLKVFTSIGRWDFAEELSTTKFRAENIRLNAIEQEADEGLKEPKLVVYKDEDLGSLVS************QYAGDTNILENNGTD********************************PNVQASLLRVSDEKIKEMKDQVIRAQAYLNFAPPGSNSHLVKELKLRIKEVERAVGAATKDSDLSRRAFRRMNQMEATLDKASHVYPDCSAMATKLRAMTYNAEERVRLQKNQATYLVQLASRTTPKGLHCLSMQLTAEYFALQPEERHLPNQQDLHNPDLHHYAVFSDNVLACAVVVNSTVSFAKEPEKIVFHVVTDSLNLPAISMWFLLNPPGKATIQIQSIDNFNWLSTKYNATLKKENSHDPRYTSALNHLRFYLPDVFPALNKVLLFDHDVVVQSDLGRLWNIDMKGKVIGAVDTCKESEASFRRMDLFINFSDPLIAKKFDVKACTWAFGMNLFDLQEWRKRKLTAVYHKYLQLVCEYLRFCLNLHFLALLIASLCYLLEQYILVYHNILNDYLQVSCDTNSPIRIFFFFF

****RRWQRISILALLSVSVIAPVIFVSNRLKVFTSIGRWDFAEELST********************L**P************************************************************************RSPNVQASLLRVSDEKIKEMKDQVIRAQAYLNFAPPGSNSHLVKELKLRIKEVERAVGAATKDSDLSRRAFRRMNQMEATLDKASHVYPDCSAMATKLRAMTYNAEERVRLQKNQATYLVQLASRTTPKGLHCLSMQLTAEYFALQPEERHLPNQQDLHNPDLHHYAVFSDNVLACAVVVNSTVSFAKEPEKIVFHVVTDSLNLPAISMWFLLNPPGKATIQIQSIDNFNWLSTKYNATLKKENSHDPRYTSALNHLRFYLPDVFPALNKVLLFDHDVVVQSDLGRLWNIDMKGKVIGAVDTCKESEASFRRMDLFINFSDPLIAKKFDVKACTWAFGMNLFDLQEWRKRKLTAVYHKYLQLVCEYLRFCLNLHFLALLIASLCYLLEQYILVYHNILNDYLQVSCDTNSPIRIFFFFF

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SSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

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MNQVRRWQRISILALLSVSVIAPVIFVSNRLKVFTSIGRWDFAEELSTTKFRAENIRLNAIEQEADEGLKEPKLVVYKDEDLGSLVSYSTSTESDTKQSQYAGDTNILENNGTDEGKEENKKMKQKTASSGSRGKDQTNQAGARRSPNVQASLLRVSDEKIKEMKDQVIRAQAYLNFAPPGSNSHLxxxxxxxxxxxxxxxxxxxxxSDLSRRAFRRMNQMEATLDKASHVYPDCSAMATKLRAMTYNAEERVRLQKNQATYLVQLASRTTPKGLHCLSMQLTAEYFALQPEERHLPNQQDLHNPDLHHYAVFSDNVLACAVVVNSTVSFAKEPEKIVFHVVTDSLNLPAISMWFLLNPPGKATIQIQSIDNFNWLSTKYNATLKKENSHDPRYTSALNHLRFYLPDVFPALNKVLLFDHDVVVQSDLGRLWNIDMKGKVIGAVDTCKESEASFRRMDLFINFSDPLIAKKFDVKACTWAFGMNLFDLQEWRKRKLTAVYHKYLQLVCEYLRFCLNLHFLALLIASLCYLLEQYILVYHNILNDYLQVSCDTNSPIRIFFFFF

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		563	2.2.26 [Sep-21-2011]
Q9M9Y5		589	Probable galacturonosyltr	yes	no	0.863	0.825	0.577	1e-169
Q8RXE1		610	Probable galacturonosyltr	no	no	0.893	0.824	0.565	1e-157
Q93ZX7		616	Probable galacturonosyltr	no	no	0.866	0.792	0.410	1e-116
Q9LE59		673	Polygalacturonate 4-alpha	no	no	0.611	0.511	0.485	1e-104
Q0WQD2		680	Probable galacturonosyltr	no	no	0.616	0.510	0.459	1e-92
Q9ZPZ1		528	Putative galacturonosyltr	no	no	0.566	0.604	0.385	2e-67
Q949Q1		537	Probable galacturonosyltr	no	no	0.600	0.629	0.367	4e-63
Q9LSG3		559	Galacturonosyltransferase	no	no	0.465	0.468	0.430	5e-62
Q9SKT6		536	Probable galacturonosyltr	no	no	0.602	0.632	0.369	5e-59
Q9ZVI7		619	Probable galacturonosyltr	no	no	0.596	0.542	0.353	3e-53

>sp\|Q9M9Y5\|GAUT6_ARATH Probable galacturonosyltransferase 6 OS=Arabidopsis thaliana GN=GAUT6 PE=2 SV=1	Back alignment and function desciption

 Score =  594 bits (1532), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 299/518 (57%), Positives = 376/518 (72%), Gaps = 32/518 (6%)

Query: 1   MNQVRRWQRISILALLSVSVIAPVIFVSNRLKVFTSIGRWDFAEELSTTKFRAENIRLNA 60
           M Q+RRWQRI ILALLS+SV AP+IFVSNRLK  T +GR +F EELS  +F   ++RL+A
Sbjct: 1   MKQIRRWQRILILALLSISVFAPLIFVSNRLKSITPVGRREFIEELSKIRFTTNDLRLSA 60

Query: 61  IEQEADEGLKEPKLVVYKDEDLGSLVSYSTSTESDTKQSQYAGDTNILENNGTDEGKEEN 120
           IE E  EGLK P+L+++KD +      +++S ESD                 T + +EE 
Sbjct: 61  IEHEDGEGLKGPRLILFKDGE------FNSSAESD--------------GGNTYKNREEQ 100

Query: 121 KKMKQK-TASSGSRGK--DQTNQAG---------ARRSPNVQASLLRVSDEKIKEMKDQV 168
             + QK T SS  +G+     NQ           ++   N +    R +D K KE++D++
Sbjct: 101 VIVSQKMTVSSDEKGQILPTVNQLANKTDFKPPLSKGEKNTRVQPDRATDVKTKEIRDKI 160

Query: 169 IRAQAYLNFAPPGSNSHLVKELKLRIKEVERAVGAATKDSDLSRRAFRRMNQMEATLDKA 228
           I+A+AYLNFAPPGSNS +VKEL+ R+KE+ER+VG ATKD DLS+ A RR+  ME  L KA
Sbjct: 161 IQAKAYLNFAPPGSNSQVVKELRGRLKELERSVGDATKDKDLSKGALRRVKPMENVLYKA 220

Query: 229 SHVYPDCSAMATKLRAMTYNAEERVRLQKNQATYLVQLASRTTPKGLHCLSMQLTAEYFA 288
           S V+ +C A+ATKLRAM YN EE+V+ QKNQA YL+QLA+RTTPKGLHCLSM+LT+EYF+
Sbjct: 221 SRVFNNCPAIATKLRAMNYNTEEQVQAQKNQAAYLMQLAARTTPKGLHCLSMRLTSEYFS 280

Query: 289 LQPEERHLPNQQDLHNPDLHHYAVFSDNVLACAVVVNSTVSFAKEPEKIVFHVVTDSLNL 348
           L PE+R +PNQQ+  + + +HY VFSDNVLA +VVVNST+S +KEPE+IVFHVVTDSLN 
Sbjct: 281 LDPEKRQMPNQQNYFDANFNHYVVFSDNVLASSVVVNSTISSSKEPERIVFHVVTDSLNY 340

Query: 349 PAISMWFLLNPPGKATIQIQSIDNFNWLSTKYNATLKKENSHDPRYTSALNHLRFYLPDV 408
           PAISMWFLLN   KATIQI +ID+ + L   Y+  L K+NS+DPR+ S LNH RFYLPD+
Sbjct: 341 PAISMWFLLNIQSKATIQILNIDDMDVLPRDYDQLLMKQNSNDPRFISTLNHARFYLPDI 400

Query: 409 FPALNKVLLFDHDVVVQSDLGRLWNIDMKGKVIGAVDTCKESEASFRRMDLFINFSDPLI 468
           FP LNK++L DHDVVVQ DL RLW+IDMKGKV+GAV+TC E E+SFR M  FINFSD  +
Sbjct: 401 FPGLNKMVLLDHDVVVQRDLSRLWSIDMKGKVVGAVETCLEGESSFRSMSTFINFSDTWV 460

Query: 469 AKKFDVKACTWAFGMNLFDLQEWRKRKLTAVYHKYLQL 506
           A KF  +ACTWAFGMNL DL+EWR RKLT+ Y KY  L
Sbjct: 461 AGKFSPRACTWAFGMNLIDLEEWRIRKLTSTYIKYFNL 498

Probably involved in pectin biosynthesis in cell walls.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 4EC: .EC: 1EC: .EC: -

>sp\|Q8RXE1\|GAUT5_ARATH Probable galacturonosyltransferase 5 OS=Arabidopsis thaliana GN=GAUT5 PE=2 SV=1	Back alignment and function description

>sp\|Q93ZX7\|GAUT4_ARATH Probable galacturonosyltransferase 4 OS=Arabidopsis thaliana GN=GAUT4 PE=2 SV=1	Back alignment and function description

>sp\|Q9LE59\|GAUT1_ARATH Polygalacturonate 4-alpha-galacturonosyltransferase OS=Arabidopsis thaliana GN=GAUT1 PE=1 SV=1	Back alignment and function description

>sp\|Q0WQD2\|GAUT3_ARATH Probable galacturonosyltransferase 3 OS=Arabidopsis thaliana GN=GAUT3 PE=2 SV=2	Back alignment and function description

>sp\|Q9ZPZ1\|GAUT2_ARATH Putative galacturonosyltransferase 2 OS=Arabidopsis thaliana GN=GAUT2 PE=5 SV=1	Back alignment and function description

>sp\|Q949Q1\|GAUTB_ARATH Probable galacturonosyltransferase 11 OS=Arabidopsis thaliana GN=GAUT11 PE=2 SV=1	Back alignment and function description

>sp\|Q9LSG3\|GAUT8_ARATH Galacturonosyltransferase 8 OS=Arabidopsis thaliana GN=GAUT8 PE=1 SV=1	Back alignment and function description

>sp\|Q9SKT6\|GAUTA_ARATH Probable galacturonosyltransferase 10 OS=Arabidopsis thaliana GN=GAUT10 PE=2 SV=2	Back alignment and function description

>sp\|Q9ZVI7\|GAUT7_ARATH Probable galacturonosyltransferase 7 OS=Arabidopsis thaliana GN=GAUT7 PE=1 SV=2	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		563
224085587		605	glycosyltransferase, CAZy family GT8 [Po	0.884	0.823	0.657	0.0
225437237		588	PREDICTED: probable galacturonosyltransf	0.886	0.848	0.631	0.0
255559941		633	Glycosyltransferase QUASIMODO1, putative	0.891	0.793	0.609	0.0
356502770		585	PREDICTED: probable galacturonosyltransf	0.882	0.849	0.571	1e-169
297843472		595	hypothetical protein ARALYDRAFT_470701 [	0.895	0.847	0.583	1e-168
356504981		625	PREDICTED: probable galacturonosyltransf	0.891	0.803	0.592	1e-167
18390688		589	alpha-1,4-galacturonosyltransferase [Ara	0.863	0.825	0.577	1e-167
356570614		625	PREDICTED: probable galacturonosyltransf	0.891	0.803	0.576	1e-166
334182350		602	alpha-1,4-galacturonosyltransferase [Ara	0.863	0.807	0.563	1e-164
449530927		512	PREDICTED: probable galacturonosyltransf	0.884	0.972	0.575	1e-163

>gi\|224085587\|ref\|XP_002307628.1\| glycosyltransferase, CAZy family GT8 [Populus trichocarpa] gi\|222857077\|gb\|EEE94624.1\| glycosyltransferase, CAZy family GT8 [Populus trichocarpa]	Back alignment and taxonomy information

 Score =  691 bits (1782), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/522 (65%), Positives = 414/522 (79%), Gaps = 24/522 (4%)

Query: 1   MNQVRRWQRISILALLSVSVIAPVIFVSNRLKVFTSIGRWDFAEELSTTKFRAENIRLNA 60
           M + RRWQRI +L+LL ++V+AP++FVS        +GR +   +LST ++R ++++LNA
Sbjct: 1   MKKFRRWQRIFLLSLLCLTVLAPILFVS--------VGRKELISDLSTLRYRRDSVQLNA 52

Query: 61  IEQEADEGLKEPKLVVYKDEDLGSLVSYSTSTESD--------------TKQSQYAGDTN 106
           IEQE  EGLK PKLVVY +++LGS +SYSTS E++              +K+SQ  G+T+
Sbjct: 53  IEQEEGEGLKGPKLVVYDEKELGSRISYSTSEENNDSKKYGNIGEIDRGSKRSQRGGNTS 112

Query: 107 ILENNGTDEGKEENKKMKQKTASSGSRGK--DQTNQAGARRSPNVQASLLRVSDEKIKEM 164
           I       E +EEN+++ Q+T +S S  K   Q+NQA  R   N+++ +   +DEK+K+M
Sbjct: 113 IPLERTNHESREENRQIPQETVTSRSEAKLQGQSNQATVRHDQNMRSPVRIFTDEKVKQM 172

Query: 165 KDQVIRAQAYLNFAPPGSNSHLVKELKLRIKEVERAVGAATKDSDLSRRAFRRMNQMEAT 224
           KD +IRA+AYL+  PPGSNSHLVKEL+LRIKE ERAV AA KDSDLSR A ++   +E T
Sbjct: 173 KDDLIRAKAYLSMTPPGSNSHLVKELRLRIKESERAVSAANKDSDLSRSALQKKRSLEVT 232

Query: 225 LDKASHVYPDCSAMATKLRAMTYNAEERVRLQKNQATYLVQLASRTTPKGLHCLSMQLTA 284
           L KAS V+PDCSAMA KLRAMTYNAEE+VR QKNQATYLVQL+ RTTPKGLHCLSM+LTA
Sbjct: 233 LSKASRVFPDCSAMALKLRAMTYNAEEQVRAQKNQATYLVQLSGRTTPKGLHCLSMRLTA 292

Query: 285 EYFALQPEERHLPNQQDLHNPDLHHYAVFSDNVLACAVVVNSTVSFAKEPEKIVFHVVTD 344
           EYFAL PEER LPNQQ +H+ DL+HYAVFSDNVLACAVVVNSTVS A EPEKIVFH+VTD
Sbjct: 293 EYFALSPEERQLPNQQRVHDADLYHYAVFSDNVLACAVVVNSTVSSAMEPEKIVFHIVTD 352

Query: 345 SLNLPAISMWFLLNPPGKATIQIQSIDNFNWLSTKYNATLKKENSHDPRYTSALNHLRFY 404
           SLNLP ISMWFLLNPPGKATIQIQS+ +F  LS  YN+TLK+ NS D RYTSALNHLRFY
Sbjct: 353 SLNLPTISMWFLLNPPGKATIQIQSLVDFKGLSANYNSTLKQLNSRDSRYTSALNHLRFY 412

Query: 405 LPDVFPALNKVLLFDHDVVVQSDLGRLWNIDMKGKVIGAVDTCKESEASFRRMDLFINFS 464
           LPDVFP LNK++LFDHDVVVQ DL  LW+++MKGKVIGAVDTC+E E SFRRMD FINFS
Sbjct: 413 LPDVFPQLNKIVLFDHDVVVQKDLAGLWSLNMKGKVIGAVDTCREGEPSFRRMDKFINFS 472

Query: 465 DPLIAKKFDVKACTWAFGMNLFDLQEWRKRKLTAVYHKYLQL 506
           DP + K+FD KACTWAFGMNLFDLQEWR+ KLTA+Y+KYLQL
Sbjct: 473 DPFVIKRFDAKACTWAFGMNLFDLQEWRRHKLTALYNKYLQL 514

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|225437237\|ref\|XP_002282102.1\| PREDICTED: probable galacturonosyltransferase 6 [Vitis vinifera] gi\|297735505\|emb\|CBI17945.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|255559941\|ref\|XP_002520989.1\| Glycosyltransferase QUASIMODO1, putative [Ricinus communis] gi\|223539826\|gb\|EEF41406.1\| Glycosyltransferase QUASIMODO1, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|356502770\|ref\|XP_003520189.1\| PREDICTED: probable galacturonosyltransferase 6-like [Glycine max]	Back alignment and taxonomy information

>gi\|297843472\|ref\|XP_002889617.1\| hypothetical protein ARALYDRAFT_470701 [Arabidopsis lyrata subsp. lyrata] gi\|297335459\|gb\|EFH65876.1\| hypothetical protein ARALYDRAFT_470701 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|356504981\|ref\|XP_003521271.1\| PREDICTED: probable galacturonosyltransferase 6-like [Glycine max]	Back alignment and taxonomy information

>gi|18390688|ref|NP_563771.1| alpha-1,4-galacturonosyltransferase [Arabidopsis thaliana] gi|75191689|sp|Q9M9Y5.1|GAUT6_ARATH RecName: Full=Probable galacturonosyltransferase 6 gi|7523701|gb|AAF63140.1|AC011001_10 Unknown protein [Arabidopsis thaliana] gi|15028087|gb|AAK76574.1| unknown protein [Arabidopsis thaliana] gi|20259311|gb|AAM14391.1| unknown protein [Arabidopsis thaliana] gi|332189914|gb|AEE28035.1| alpha-1,4-galacturonosyltransferase [Arabidopsis thaliana]

Back alignment and taxonomy information

>gi\|356570614\|ref\|XP_003553480.1\| PREDICTED: probable galacturonosyltransferase 6-like [Glycine max]	Back alignment and taxonomy information

>gi\|334182350\|ref\|NP_001184925.1\| alpha-1,4-galacturonosyltransferase [Arabidopsis thaliana] gi\|332189915\|gb\|AEE28036.1\| alpha-1,4-galacturonosyltransferase [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|449530927\|ref\|XP_004172443.1\| PREDICTED: probable galacturonosyltransferase 6-like, partial [Cucumis sativus]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		563
TAIR\|locus:504955915		610	LGT5 "los glycosyltransferase	0.893	0.824	0.565	7.1e-148
TAIR\|locus:2160957		616	GAUT4 "galacturonosyltransfera	0.715	0.654	0.367	3e-110
TAIR\|locus:2121753		680	GAUT3 "galacturonosyltransfera	0.506	0.419	0.397	1.5e-87
TAIR\|locus:2098836		673	GAUT1 "galacturonosyltransfera	0.465	0.389	0.455	1.4e-62
TAIR\|locus:2027453		537	GAUT11 "galacturonosyltransfer	0.211	0.221	0.512	1.3e-58
TAIR\|locus:2064163		619	GAUT7 "AT2G38650" [Arabidopsis	0.857	0.780	0.310	3.2e-58
TAIR\|locus:2074572		561	GAUT9 "galacturonosyltransfera	0.245	0.245	0.482	6.7e-55
TAIR\|locus:2102082		533	GAUT13 "galacturonosyltransfer	0.213	0.225	0.5	2.2e-53
TAIR\|locus:2180947		532	GAUT14 "galacturonosyltransfer	0.234	0.248	0.485	2.3e-53
TAIR\|locus:2039934		528	GAUT2 "galacturonosyltransfera	0.591	0.630	0.344	1.5e-51

TAIR\|locus:504955915 LGT5 "los glycosyltransferase 5" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1444 (513.4 bits), Expect = 7.1e-148, P = 7.1e-148
 Identities = 295/522 (56%), Positives = 376/522 (72%)

Query:     1 MNQVRRWQRISILALLSVSVIAPVIFVSNRLKVFTSIGRWDFAEELSTTKFRAEN-IRLN 59
             MNQVRRWQRI IL+LL +SV+AP++FVSNRLK  TS+ R +F EELS    + E+ +RL 
Sbjct:     1 MNQVRRWQRILILSLLLLSVLAPIVFVSNRLKSITSVDRGEFIEELSDITDKTEDELRLT 60

Query:    60 AIEQEADEGLKEPKLVVYKDEDLGSLV-SYSTSTESDTKQSQYAGDTNILE--NNGTDEG 116
             AIEQ+ +EGLKEPK ++ +D D  S+V S S+   +DT QS      N L   + G +  
Sbjct:    61 AIEQD-EEGLKEPKRIL-QDRDFNSVVLSNSSDKSNDTVQSNEGDQKNFLSEVDKGNNHK 118

Query:   117 KEENKKMKQKTASSGSR-----GKD-QTNQAGARRSP------NVQASLLRVSDEKIKEM 164
              +E + + QKT  S +       +D Q N     R P      N +  L R +DE++KE+
Sbjct:   119 PKEEQAVSQKTTVSSNAEVKISARDIQLNHKTEFRPPSSKSEKNTRVQLERATDERVKEI 178

Query:   165 KDQVIRAQAYLNFAPPGSNSHLVKELKLRIKEVERAVGAATKDSDLSRRAFRRMNQMEAT 224
             +D++I+A+AYLN A PG+NS +VKEL++R KE+ERA G  TKD  L + +  R+  ME  
Sbjct:   179 RDKIIQAKAYLNLALPGNNSQIVKELRVRTKELERATGDTTKDKYLPKSSPNRLKAMEVA 238

Query:   225 LDKASHVYPDCSAMATKLRAMTYNAEERVRLQKNQATYLVQLASRTTPKGLHCLSMQLTA 284
             L K S  + +C A+ATKL+AMTY  EE+ R QK QA YL+QLA+RTTPKGLHCLSM+LT 
Sbjct:   239 LYKVSRAFHNCPAIATKLQAMTYKTEEQARAQKKQAAYLMQLAARTTPKGLHCLSMRLTT 298

Query:   285 EYFALQPEERHLPNQQDLHNPDLHHYAVFSDNVLACAVVVNSTVSFAKEPEKIVFHVVTD 344
             EYF L  E+R L  QQ  ++PDL+HY VFSDNVLA +VVVNST+S +KEP+KIVFHVVTD
Sbjct:   299 EYFTLDHEKRQLL-QQSYNDPDLYHYVVFSDNVLASSVVVNSTISSSKEPDKIVFHVVTD 357

Query:   345 SLNLPAISMWFLLNPPGKATIQIQSIDNFNWLSTKYNATLKKENSHDPRYTSALNHLRFY 404
             SLN PAISMWFLLNP G+A+IQI +ID  N L   +   L K+NS DPR  SALNH RFY
Sbjct:   358 SLNYPAISMWFLLNPSGRASIQILNIDEMNVLPLYHAELLMKQNSSDPRIISALNHARFY 417

Query:   405 LPDVFPALNKVLLFDHDVVVQSDLGRLWNIDMKGKVIGAVDTCKESEASFRRMDLFINFS 464
             LPD+FP LNK++LFDHDVVVQ DL RLW++DM GKV+GAV+TC E + S+R MD FINFS
Sbjct:   418 LPDIFPGLNKIVLFDHDVVVQRDLTRLWSLDMTGKVVGAVETCLEGDPSYRSMDSFINFS 477

Query:   465 DPLIAKKFDVKACTWAFGMNLFDLQEWRKRKLTAVYHKYLQL 506
             D  +++KFD KACTWAFGMNLFDL+EWR+++LT+VY KY  L
Sbjct:   478 DAWVSQKFDPKACTWAFGMNLFDLEEWRRQELTSVYLKYFDL 519

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0016051 "carbohydrate biosynthetic process" evidence=ISS

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=IEA;ISS

GO:0047262 "polygalacturonate 4-alpha-galacturonosyltransferase activity" evidence=ISS

TAIR\|locus:2160957 GAUT4 "galacturonosyltransferase 4" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2121753 GAUT3 "galacturonosyltransferase 3" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2098836 GAUT1 "galacturonosyltransferase 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2027453 GAUT11 "galacturonosyltransferase 11" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2064163 GAUT7 "AT2G38650" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2074572 GAUT9 "galacturonosyltransferase 9" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2102082 GAUT13 "galacturonosyltransferase 13" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2180947 GAUT14 "galacturonosyltransferase 14" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2039934 GAUT2 "galacturonosyltransferase 2" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9M9Y5	GAUT6_ARATH	2, ., 4, ., 1, ., -	0.5772	0.8632	0.8251	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		563
PLN02718		603	PLN02718, PLN02718, Probable galacturonosyltransfe	0.0
PLN02829		639	PLN02829, PLN02829, Probable galacturonosyltransfe	1e-170
PLN02910		657	PLN02910, PLN02910, polygalacturonate 4-alpha-gala	1e-125
PLN02742		534	PLN02742, PLN02742, Probable galacturonosyltransfe	1e-99
PLN02769		629	PLN02769, PLN02769, Probable galacturonosyltransfe	1e-85
PLN02523		559	PLN02523, PLN02523, galacturonosyltransferase	2e-81
PLN02870		533	PLN02870, PLN02870, Probable galacturonosyltransfe	8e-72
PLN02867		535	PLN02867, PLN02867, Probable galacturonosyltransfe	5e-69
PLN02659		534	PLN02659, PLN02659, Probable galacturonosyltransfe	1e-66
cd06429		257	cd06429, GT8_like_1, GT8_like_1 represents a subfa	3e-56
pfam01501		248	pfam01501, Glyco_transf_8, Glycosyl transferase fa	5e-34
cd04194		248	cd04194, GT8_A4GalT_like, A4GalT_like proteins cat	4e-12
COG1442		325	COG1442, RfaJ, Lipopolysaccharide biosynthesis pro	1e-08
cd00505		246	cd00505, Glyco_transf_8, Members of glycosyltransf	2e-06
cd06431		280	cd06431, GT8_LARGE_C, LARGE catalytic domain has c	7e-04
cd06432		248	cd06432, GT8_HUGT1_C_like, The C-terminal domain o	0.003

>gnl\|CDD\|178320 PLN02718, PLN02718, Probable galacturonosyltransferase	Back alignment and domain information

 Score =  831 bits (2147), Expect = 0.0
 Identities = 341/519 (65%), Positives = 409/519 (78%), Gaps = 20/519 (3%)

Query: 1   MNQVRRWQRISILALLSVSVIAPVIFVSNRLKVFTSIGRWDFAEELSTTKFRAENIRLNA 60
           M QVRRWQRI IL+LLS+SV AP+IFVSNRLK  T +GR +F EELST ++R +++RL+A
Sbjct: 1   MKQVRRWQRILILSLLSLSVFAPLIFVSNRLKSITPVGRKEFIEELSTIRYRTDDLRLSA 60

Query: 61  IEQEADEGLKEPKLVVYKDEDLGSLVSYSTSTES-DTKQSQYAGDTNILENNGTDEGKEE 119
           IEQE  EGLK PKLV+Y+D D  S+VSY++S ++ D+ +S+  G  N        + KEE
Sbjct: 61  IEQEEGEGLKGPKLVIYQDGDFNSVVSYNSSDKNNDSLESEVDGGNN-------HKPKEE 113

Query: 120 NKKMKQKTASSGSRG------------KDQTNQAGARRSPNVQASLLRVSDEKIKEMKDQ 167
             ++ QKT  S S              K Q N    +   N +    R +DEK+KE++D+
Sbjct: 114 QAQVSQKTTVSSSEEVQISARDIQLNHKTQFNPPTVKHEKNTRVQPRRATDEKVKEIRDK 173

Query: 168 VIRAQAYLNFAPPGSNSHLVKELKLRIKEVERAVGAATKDSDLSRRAFRRMNQMEATLDK 227
           +I+A+AYLN APPGSNS LVKEL+LR KE+ERAVG ATKD DLS+ A +RM  ME TL K
Sbjct: 174 IIQAKAYLNLAPPGSNSQLVKELRLRTKELERAVGDATKDKDLSKSALQRMKSMEVTLYK 233

Query: 228 ASHVYPDCSAMATKLRAMTYNAEERVRLQKNQATYLVQLASRTTPKGLHCLSMQLTAEYF 287
           AS V+P+C A+ATKLRAMTYN EE+VR QKNQA YL+QLA+RTTPKGLHCLSM+LTAEYF
Sbjct: 234 ASRVFPNCPAIATKLRAMTYNTEEQVRAQKNQAAYLMQLAARTTPKGLHCLSMRLTAEYF 293

Query: 288 ALQPEERHLPNQQDLHNPDLHHYAVFSDNVLACAVVVNSTVSFAKEPEKIVFHVVTDSLN 347
           AL PE+R LPNQQ  ++PDL+HY VFSDNVLAC+VVVNST+S +KEPEKIVFHVVTDSLN
Sbjct: 294 ALDPEKRQLPNQQRYNDPDLYHYVVFSDNVLACSVVVNSTISSSKEPEKIVFHVVTDSLN 353

Query: 348 LPAISMWFLLNPPGKATIQIQSIDNFNWLSTKYNATLKKENSHDPRYTSALNHLRFYLPD 407
            PAISMWFLLNPPGKATIQI +ID+ N L   YN+ L K+NSHDPRY SALNH RFYLPD
Sbjct: 354 YPAISMWFLLNPPGKATIQILNIDDMNVLPADYNSLLMKQNSHDPRYISALNHARFYLPD 413

Query: 408 VFPALNKVLLFDHDVVVQSDLGRLWNIDMKGKVIGAVDTCKESEASFRRMDLFINFSDPL 467
           +FP LNK++LFDHDVVVQ DL RLW++DMKGKV+GAV+TC E E SFR MD FINFSDP 
Sbjct: 414 IFPGLNKIVLFDHDVVVQRDLSRLWSLDMKGKVVGAVETCLEGEPSFRSMDTFINFSDPW 473

Query: 468 IAKKFDVKACTWAFGMNLFDLQEWRKRKLTAVYHKYLQL 506
           +AKKFD KACTWAFGMNLFDL+EWR++KLT+VYHKYLQL
Sbjct: 474 VAKKFDPKACTWAFGMNLFDLEEWRRQKLTSVYHKYLQL 512

Length = 603

>gnl\|CDD\|215443 PLN02829, PLN02829, Probable galacturonosyltransferase	Back alignment and domain information

>gnl\|CDD\|215493 PLN02910, PLN02910, polygalacturonate 4-alpha-galacturonosyltransferase	Back alignment and domain information

>gnl\|CDD\|215395 PLN02742, PLN02742, Probable galacturonosyltransferase	Back alignment and domain information

>gnl\|CDD\|215412 PLN02769, PLN02769, Probable galacturonosyltransferase	Back alignment and domain information

>gnl\|CDD\|215286 PLN02523, PLN02523, galacturonosyltransferase	Back alignment and domain information

>gnl\|CDD\|215468 PLN02870, PLN02870, Probable galacturonosyltransferase	Back alignment and domain information

>gnl\|CDD\|178458 PLN02867, PLN02867, Probable galacturonosyltransferase	Back alignment and domain information

>gnl\|CDD\|215356 PLN02659, PLN02659, Probable galacturonosyltransferase	Back alignment and domain information

>gnl\|CDD\|133051 cd06429, GT8_like_1, GT8_like_1 represents a subfamily of GT8 with unknown function	Back alignment and domain information

>gnl\|CDD\|216536 pfam01501, Glyco_transf_8, Glycosyl transferase family 8	Back alignment and domain information

>gnl\|CDD\|133037 cd04194, GT8_A4GalT_like, A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface	Back alignment and domain information

>gnl\|CDD\|224359 COG1442, RfaJ, Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>gnl\|CDD\|132996 cd00505, Glyco_transf_8, Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis	Back alignment and domain information

>gnl\|CDD\|133053 cd06431, GT8_LARGE_C, LARGE catalytic domain has closest homology to GT8 glycosyltransferase involved in lipooligosaccharide synthesis	Back alignment and domain information

>gnl\|CDD\|133054 cd06432, GT8_HUGT1_C_like, The C-terminal domain of HUGT1-like is highly homologous to the GT 8 family	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		563
PLN02718		603	Probable galacturonosyltransferase	100.0
PLN02829		639	Probable galacturonosyltransferase	100.0
PLN02910		657	polygalacturonate 4-alpha-galacturonosyltransferas	100.0
PLN02769		629	Probable galacturonosyltransferase	100.0
PLN02742		534	Probable galacturonosyltransferase	100.0
PLN02870		533	Probable galacturonosyltransferase	100.0
PLN02523		559	galacturonosyltransferase	100.0
PLN02867		535	Probable galacturonosyltransferase	100.0
PLN02659		534	Probable galacturonosyltransferase	100.0
cd06429		257	GT8_like_1 GT8_like_1 represents a subfamily of GT	100.0
PRK15171		334	lipopolysaccharide 1,3-galactosyltransferase; Prov	100.0
cd00505		246	Glyco_transf_8 Members of glycosyltransferase fami	100.0
cd04194		248	GT8_A4GalT_like A4GalT_like proteins catalyze the	100.0
cd06431		280	GT8_LARGE_C LARGE catalytic domain has closest hom	100.0
cd06432		248	GT8_HUGT1_C_like The C-terminal domain of HUGT1-li	100.0
COG1442		325	RfaJ Lipopolysaccharide biosynthesis proteins, LPS	100.0
cd06430		304	GT8_like_2 GT8_like_2 represents a subfamily of GT	100.0
PF01501		250	Glyco_transf_8: Glycosyl transferase family 8; Int	99.97
cd02537		240	GT8_Glycogenin Glycogenin belongs the GT 8 family	99.85
PLN00176		333	galactinol synthase	99.8
cd06914		278	GT8_GNT1 GNT1 is a fungal enzyme that belongs to t	99.63
KOG1879		1470	consensus UDP-glucose:glycoprotein glucosyltransfe	99.14
COG5597		368	Alpha-N-acetylglucosamine transferase [Cell envelo	95.72
PF03407		212	Nucleotid_trans: Nucleotide-diphospho-sugar transf	94.0
PF11051		271	Mannosyl_trans3: Mannosyltransferase putative; Int	91.58

>PLN02718 Probable galacturonosyltransferase	Back alignment and domain information

Probab=100.00  E-value=2.4e-138  Score=1126.90  Aligned_cols=535  Identities=64%  Similarity=0.997  Sum_probs=496.1

Q ss_pred             ChhhhHHHHHHHHHHHHHHhhhceeEEecccCccccccccchhhhhhhcccccccccccccccccccccCCCcEEeeccC
Q 008524            1 MNQVRRWQRISILALLSVSVIAPVIFVSNRLKVFTSIGRWDFAEELSTTKFRAENIRLNAIEQEADEGLKEPKLVVYKDE   80 (563)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (563)
                      |||+|||+|++||+||||||+|||+|||+||++|||++|+||+|||++++|++|+.+|||||||++++||||++|||+|+
T Consensus         1 ~~~~~~~~r~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lk~~~~~~~~~~   80 (603)
T PLN02718          1 MKQVRRWQRILILSLLSLSVFAPLIFVSNRLKSITPVGRKEFIEELSTIRYRTDDLRLSAIEQEEGEGLKGPKLVIYQDG   80 (603)
T ss_pred             ChHHHHHHHHHHHHHHHHHHhhceeEeeccccccCccchhhhHHHHhhhccccCccccccccccccccccCceeEEeecC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             Cccccccccc-ccCCccccccccCccccccCCCCcchhhhhhhhhhhhcccCCCC------------ccccccccccCCC
Q 008524           81 DLGSLVSYST-STESDTKQSQYAGDTNILENNGTDEGKEENKKMKQKTASSGSRG------------KDQTNQAGARRSP  147 (563)
Q Consensus        81 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~  147 (563)
                      ++++.+++++ ..++|.-++       +..++..|...+++.+++|.+..+.+++            +.+.++++.++++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~-------~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (603)
T PLN02718         81 DFNSVVSYNSSDKNNDSLES-------EVDGGNNHKPKEEQAQVSQKTTVSSSEEVQISARDIQLNHKTQFNPPTVKHEK  153 (603)
T ss_pred             CcCccccccccccccchhhh-------hccCccccccchhcccchheeecccccccccchhhhhhhhhhccCCCcccccc
Confidence            9999988754 556666444       3345557777777777777776655554            4455568889999


Q ss_pred             CcccccccCchHHHHHhhHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHHHhcccCCCCcccHHHHHHHHHHHHHHHH
Q 008524          148 NVQASLLRVSDEKIKEMKDQVIRAQAYLNFAPPGSNSHLVKELKLRIKEVERAVGAATKDSDLSRRAFRRMNQMEATLDK  227 (563)
Q Consensus       148 ~~~~~~~~~~d~~~~~~~dq~~~a~ay~~~a~~~~~~~~~~el~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~  227 (563)
                      +.|+++++++|++||+|||||||||||++|||++||++|+|||+++|||+||+||+++.|++||+++.++|++|+++|++
T Consensus       154 ~~~~~~~~~~d~~v~~~~dql~~ak~y~~~a~~~~~~~~~~el~~~i~e~~~~l~~~~~d~~lp~~~~~~~~~m~~~~~~  233 (603)
T PLN02718        154 NTRVQPRRATDEKVKEIRDKIIQAKAYLNLAPPGSNSQLVKELRLRTKELERAVGDATKDKDLSKSALQRMKSMEVTLYK  233 (603)
T ss_pred             cCcCCcccCcHHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccchhhhhchHHHhccCCCCCCCCCCCCCCCCCc
Q 008524          228 ASHVYPDCSAMATKLRAMTYNAEERVRLQKNQATYLVQLASRTTPKGLHCLSMQLTAEYFALQPEERHLPNQQDLHNPDL  307 (563)
Q Consensus       228 a~~~~~d~~~~~~kl~~~~~~~e~~~~~~~~~~~~~~~la~~~~Pk~~hcL~~rLt~e~~~~~~~~~~~~~~~~l~d~~~  307 (563)
                      ||+++|||++|++|||||++++||++++||+|++|++||||+|+|||||||+||||+|||...+..+++|+.++|+||+.
T Consensus       234 a~~~~~d~~~~~~klr~~~~~~e~~~~~~~~q~~~~~~laa~~~PK~lhCL~~rLt~ey~~~~~~~~~~~~~~~l~d~~~  313 (603)
T PLN02718        234 ASRVFPNCPAIATKLRAMTYNTEEQVRAQKNQAAYLMQLAARTTPKGLHCLSMRLTAEYFALDPEKRQLPNQQRYNDPDL  313 (603)
T ss_pred             HHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccchhhHHHHhhCChhhccCCChhhccCCcc
Confidence            99999999999999999999999999999999999999999999999999999999999999998899999999999999


Q ss_pred             eeEEEEeCcchhhHHHHHHHHhhcCCCCceEEEEEeCCCCHHHHHHHHhhCCCCCceEEEEEccCCccchhhhhhhhhcc
Q 008524          308 HHYAVFSDNVLACAVVVNSTVSFAKEPEKIVFHVVTDSLNLPAISMWFLLNPPGKATIQIQSIDNFNWLSTKYNATLKKE  387 (563)
Q Consensus       308 iHIv~~sDnvLaasVvI~Siv~Ns~~p~~i~FHIltd~is~~~mk~wf~~n~~~~a~Ie~i~i~~~~~l~~~~~~vl~~l  387 (563)
                      +|||+++||++++||+|+|++.|+++|++++|||+||++++++|+.||..++..+++|+|+++++|.|++.+|.++++++
T Consensus       314 ~Hia~~sDNvlaasVvInSil~Ns~np~~ivFHVvTD~is~~~mk~wf~l~~~~~a~I~V~~Iddf~~lp~~~~~~lk~l  393 (603)
T PLN02718        314 YHYVVFSDNVLACSVVVNSTISSSKEPEKIVFHVVTDSLNYPAISMWFLLNPPGKATIQILNIDDMNVLPADYNSLLMKQ  393 (603)
T ss_pred             eeEEEEcCCceeEEEEhhhhhhccCCCCcEEEEEEeCCCCHHHHHHHHHhCCCCCcEEEEEecchhccccccchhhhhhc
Confidence            99999999999999999999999888889999999999999999999999888899999999999999998888888888


Q ss_pred             CCCCCCCCchhhhhhhcccccccCCCeEEEEecceeeccChHHHhccCCCCCEEEEeecccchhhHHHhhhhccCCCChh
Q 008524          388 NSHDPRYTSALNHLRFYLPDVFPALNKVLLFDHDVVVQSDLGRLWNIDMKGKVIGAVDTCKESEASFRRMDLFINFSDPL  467 (563)
Q Consensus       388 ~s~~~~~iS~~~y~RL~LPeLLP~ldKVLYLD~DVIVq~DLseLw~iDL~GkviaAV~Dc~~~~~~~~r~~~~LnfsnP~  467 (563)
                      ++.+++|+|+++|+||+||++||+++||||||+||||++||++||++||+|+++|||+||......+++++.++||++|.
T Consensus       394 ~s~~~~~~S~~~y~Rl~ipellp~l~KvLYLD~DvVV~~DL~eL~~iDl~~~v~aaVedC~~~~~~~~~~~~~lnfs~p~  473 (603)
T PLN02718        394 NSHDPRYISALNHARFYLPDIFPGLNKIVLFDHDVVVQRDLSRLWSLDMKGKVVGAVETCLEGEPSFRSMDTFINFSDPW  473 (603)
T ss_pred             cccccccccHHHHHHHHHHHHhcccCEEEEEECCEEecCCHHHHhcCCCCCcEEEEeccccccccchhhhhhhhhccchh
Confidence            87778899999999999999999999999999999999999999999999999999999975332456777889999999


Q ss_pred             hhhhCCCCCCceeehhhHccHHHHHhhcHHHHHHHHHHHcccccccCCChHHHH---HHhhccceecCcccccccccccc
Q 008524          468 IAKKFDVKACTWAFGMNLFDLQEWRKRKLTAVYHKYLQLVCEYLRFCLNLHFLA---LLIASLCYLLEQYILVYHNILND  544 (563)
Q Consensus       468 i~~~f~~~~cYFNSGVlLiDLkkWRe~nitek~l~~l~~n~~~ll~~dDQDiLN---~vf~g~v~~Ld~~rWN~~gl~~~  544 (563)
                      +.++|++++||||+|||||||++||++++++++++|++++.++.+|  |||+||   ++|.|+|++||+ +||+.|+|.+
T Consensus       474 i~~~fn~~~CyfNsGVlLIDLk~WReenITe~~~~~l~~n~~~~l~--dqdaLpp~LlvF~gri~~LD~-rWNv~gLG~~  550 (603)
T PLN02718        474 VAKKFDPKACTWAFGMNLFDLEEWRRQKLTSVYHKYLQLGVKRPLW--KAGSLPIGWLTFYNQTVALDK-RWHVLGLGHE  550 (603)
T ss_pred             hhcccCCCccccccceEEEeHHHHHhcChHHHHHHHHHhccCcccc--CcccccHHHHHhcCceeecCh-HHhccCcccc
Confidence            8889999999999999999999999999999999999998776444  467665   999999999999 9999998854


Q ss_pred             c
Q 008524          545 Y  545 (563)
Q Consensus       545 ~  545 (563)
                      .
T Consensus       551 ~  551 (603)
T PLN02718        551 S  551 (603)
T ss_pred             c
Confidence            4

>PLN02829 Probable galacturonosyltransferase	Back alignment and domain information

>PLN02910 polygalacturonate 4-alpha-galacturonosyltransferase	Back alignment and domain information

>PLN02769 Probable galacturonosyltransferase	Back alignment and domain information

>PLN02742 Probable galacturonosyltransferase	Back alignment and domain information

>PLN02870 Probable galacturonosyltransferase	Back alignment and domain information

>PLN02523 galacturonosyltransferase	Back alignment and domain information

>PLN02867 Probable galacturonosyltransferase	Back alignment and domain information

>PLN02659 Probable galacturonosyltransferase	Back alignment and domain information

>cd06429 GT8_like_1 GT8_like_1 represents a subfamily of GT8 with unknown function	Back alignment and domain information

>PRK15171 lipopolysaccharide 1,3-galactosyltransferase; Provisional	Back alignment and domain information

>cd00505 Glyco_transf_8 Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis	Back alignment and domain information

>cd04194 GT8_A4GalT_like A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface	Back alignment and domain information

>cd06431 GT8_LARGE_C LARGE catalytic domain has closest homology to GT8 glycosyltransferase involved in lipooligosaccharide synthesis	Back alignment and domain information

>cd06432 GT8_HUGT1_C_like The C-terminal domain of HUGT1-like is highly homologous to the GT 8 family	Back alignment and domain information

>COG1442 RfaJ Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>cd06430 GT8_like_2 GT8_like_2 represents a subfamily of GT8 with unknown function	Back alignment and domain information

>PF01501 Glyco_transf_8: Glycosyl transferase family 8; InterPro: IPR002495 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases	Back alignment and domain information

>cd02537 GT8_Glycogenin Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen	Back alignment and domain information

>PLN00176 galactinol synthase	Back alignment and domain information

>cd06914 GT8_GNT1 GNT1 is a fungal enzyme that belongs to the GT 8 family	Back alignment and domain information

>KOG1879 consensus UDP-glucose:glycoprotein glucosyltransferase [Carbohydrate transport and metabolism]	Back alignment and domain information

>COG5597 Alpha-N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>PF03407 Nucleotid_trans: Nucleotide-diphospho-sugar transferase; InterPro: IPR005069 Proteins in this family have been been predicted to be nucleotide-diphospho-sugar transferases []	Back alignment and domain information

>PF11051 Mannosyl_trans3: Mannosyltransferase putative; InterPro: IPR022751 Alpha-mannosyltransferase is responsible for the addition of residues to the outer chain of core N-linked polysaccharides and to O-linked mannotriose	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		563
1g9r_A		311	Glycosyl transferase; alpha-beta structure; HET: U	6e-32
3tzt_A		276	Glycosyl transferase family 8; structural genomics	4e-14
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-09
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-07
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-07
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05
1qzv_F		154	Plant photosystem I: subunit PSAF; photosynthesis,	2e-04

>1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A {Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A* 1ss9_A* Length = 311	Back alignment and structure

 Score =  124 bits (313), Expect = 6e-32
 Identities = 39/213 (18%), Positives = 78/213 (36%), Gaps = 29/213 (13%)

Query: 313 FSDN-VLACAVVVNSTVSFAKEPEKIVFHVVTDSLNLPAISMWFLLNPPGKATIQIQSID 371
             DN      V   S  +   +  +I FHV+   ++    +        G   I+   ++
Sbjct: 7   ADDNYAAYLCVAAKSVEAAHPD-TEIRFHVLDAGISEANRAAVAANLRGGGGNIRFIDVN 65

Query: 372 NFNWLSTKYNATLKKENSHDPRYTSALNHLRFYLPDVFPALNKVLLFDHDVVVQSDLGRL 431
             ++               + R+ S   + R  L +     +KVL  D DV+V+  L  L
Sbjct: 66  PEDF----------AGFPLNIRHISITTYARLKLGEYIADCDKVLYLDIDVLVRDSLTPL 115

Query: 432 WNIDMKGKVIGAV-DTCKESEASFRRMDLFINFSDPLIAKKFDVKACTWAFGMNLFDLQE 490
           W+ D+    +GA  D   E           I  +D             +  G+ L +L++
Sbjct: 116 WDTDLGDNWLGASIDLFVE---RQEGYKQKIGMADG---------EYYFNAGVLLINLKK 163

Query: 491 WRKRKLTAVYHKYLQLVCEYLRFC----LNLHF 519
           WR+  +  +  ++++   + +++     LN  F
Sbjct: 164 WRRHDIFKMSSEWVEQYKDVMQYQDQDILNGLF 196

PyMOL of 1g9r

>3tzt_A Glycosyl transferase family 8; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, putative glycosyl transferase; HET: MSE CIT; 2.10A {Anaerococcus prevotii} Length = 276	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		563
3tzt_A		276	Glycosyl transferase family 8; structural genomics	100.0
1g9r_A		311	Glycosyl transferase; alpha-beta structure; HET: U	100.0
1ll2_A		333	Glycogenin-1; protein-substrate complex, beta-alph	99.84
3u2u_A		263	Glycogenin-1, GN-1, GN1; structural genomics, stru	99.8

>3tzt_A Glycosyl transferase family 8; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, putative glycosyl transferase; HET: MSE CIT; 2.10A {Anaerococcus prevotii} SCOP: c.68.1.0	Back alignment and structure

Probab=100.00  E-value=1.2e-38  Score=322.30  Aligned_cols=211  Identities=13%  Similarity=0.107  Sum_probs=154.5

Q ss_pred             ceeEEEEeCcc-h-hhHHHHHHHHhhcCCCCceEEEEEeCCCCHHHHHHHHhhCCCCCceEEEEEccCCccchhhhhhhh
Q 008524          307 LHHYAVFSDNV-L-ACAVVVNSTVSFAKEPEKIVFHVVTDSLNLPAISMWFLLNPPGKATIQIQSIDNFNWLSTKYNATL  384 (563)
Q Consensus       307 ~iHIv~~sDnv-L-aasVvI~Siv~Ns~~p~~i~FHIltd~is~~~mk~wf~~n~~~~a~Ie~i~i~~~~~l~~~~~~vl  384 (563)
                      .||||+++|+. + +++|+|+|++.|+++ ++++|||++++++.+..+.+.......++.|+++.+++ .++.       
T Consensus         5 ~i~I~~~~d~~Y~~~~~v~i~Sl~~~~~~-~~~~~~il~~~is~~~~~~L~~~~~~~~~~i~~~~~~~-~~~~-------   75 (276)
T 3tzt_A            5 ADALLLTLDENYIPQMKVLMTSIYINNPG-RIFDVYLIHSRISEDKLKDLGEDLKKFSYTLYPIRATD-DLFS-------   75 (276)
T ss_dssp             CEEEEEECCGGGHHHHHHHHHHHHHHSTT-CCEEEEEEESCCCHHHHHHHHHHHHTTTCEEEEEECC-------------
T ss_pred             eEEEEEEeCHhHHHHHHHHHHHHHHhCCC-CceEEEEEeCCCCHHHHHHHHHHHHHcCCEEEEEEeCH-HHHh-------
Confidence            48999999984 3 799999999999985 57999999999998776655544344578999998875 2222       


Q ss_pred             hccCCCCCCCCchhhhhhhcccccccC-CCeEEEEecceeeccChHHHhccCCCCCEEEEeecccchhhHHHhhhhccCC
Q 008524          385 KKENSHDPRYTSALNHLRFYLPDVFPA-LNKVLLFDHDVVVQSDLGRLWNIDMKGKVIGAVDTCKESEASFRRMDLFINF  463 (563)
Q Consensus       385 ~~l~s~~~~~iS~~~y~RL~LPeLLP~-ldKVLYLD~DVIVq~DLseLw~iDL~GkviaAV~Dc~~~~~~~~r~~~~Lnf  463 (563)
                       ..  ....++|..+|+||++|++||+ ++||||||+|+||++||++||++|++|+++|||+||....  ..+....+  
T Consensus        76 -~~--~~~~~~s~~~~~rl~~~~l~p~~~~kvlylD~D~iv~~di~~L~~~dl~~~~~aav~d~~~~~--~~~~~~~~--  148 (276)
T 3tzt_A           76 -FA--KVTDRYPKEMYYRLLAGEFLPENLGEILYLDPDMLVINPLDDLLRTDISDYILAAASHTGKTD--MANNVNRI--  148 (276)
T ss_dssp             -----------CHHHHHHHTHHHHSCTTCCEEEEECSSEEECSCSHHHHTCCCTTSSEEEEEC-----------------
T ss_pred             -cC--ccccccCHHHHHHHHHHHHcccccCeEEEEeCCeeecCCHHHHhhcCCCCCeEEEEEecccch--HHHHHHHh--
Confidence             11  1235789999999999999995 9999999999999999999999999999999999997521  11111111  


Q ss_pred             CChhhhhhCCCCCCceeehhhHccHHHHHhhcHHHHHHHHHHHcccccccCCChHHHHHHhhccceecCccccccccc
Q 008524          464 SDPLIAKKFDVKACTWAFGMNLFDLQEWRKRKLTAVYHKYLQLVCEYLRFCLNLHFLALLIASLCYLLEQYILVYHNI  541 (563)
Q Consensus       464 snP~i~~~f~~~~cYFNSGVlLiDLkkWRe~nitek~l~~l~~n~~~ll~~dDQDiLN~vf~g~v~~Ld~~rWN~~gl  541 (563)
                             .+++..||||||||||||++||+.++++++++|++++..++.++ |||+||.+|.|+|+.||+.+||++..
T Consensus       149 -------~l~~~~~yfNsGV~linl~~~R~~~~~~~~~~~~~~~~~~~~~~-DQd~LN~~f~~~~~~Lp~~~wN~~~~  218 (276)
T 3tzt_A          149 -------RLGTDTDYYNSGLLLINLKRAREEIDPDEIFSFVEDNHMNLLLP-DQDILNAMYGDRIYPLDDLIYNYDAR  218 (276)
T ss_dssp             --------------CEEEEEEEEEHHHHHHHCCHHHHHHHHHHC---------CHHHHHHHGGGEEEEEHHHHSEETT
T ss_pred             -------cCCCCCCeEEeeEEEEEHHHHHhhhHHHHHHHHHHhccccccCC-ChhHHHHHHhCCEEECCchheeeecc
Confidence                   23334599999999999999999999999999999998888888 79999999999999999526999853

PyMOL of 3tzt

>1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A {Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A* 1ss9_A*	Back alignment and structure

>1ll2_A Glycogenin-1; protein-substrate complex, beta-alpha-beta rossman-like NUCL binding fold, DXD motif, non-proline CIS peptide bond, TRAN; HET: UPG; 1.90A {Oryctolagus cuniculus} SCOP: c.68.1.14 PDB: 1ll3_A 1ll0_A 1zcv_A 1zcu_A 1zdf_A* 1zcy_A 1zdg_A*	Back alignment and structure

>3u2u_A Glycogenin-1, GN-1, GN1; structural genomics, structural genomics consortium, SGC, transferase, glycosyltransferase, glycogen biosynthesis; HET: GLC UDP; 1.45A {Homo sapiens} SCOP: c.68.1.14 PDB: 3t7n_A* 3t7o_A* 3t7m_A* 3u2v_A* 3u2x_A* 3u2t_A 3rmv_A* 3rmw_A* 3u2w_A* 3qvb_A* 3q4s_A* 1zct_A* 3v8y_A 3v8z_A* 3usr_A 3v90_A 3v91_A* 3usq_A	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		563
d1ga8a_		282	c.68.1.4 (A:) Galactosyltransferase LgtC {Neisseri	1e-15

>d1ga8a_ c.68.1.4 (A:) Galactosyltransferase LgtC {Neisseria meningitidis [TaxId: 487]} Length = 282	Back information, alignment and structure


class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Galactosyltransferase LgtC
domain: Galactosyltransferase LgtC
species: Neisseria meningitidis [TaxId: 487]

 Score = 75.3 bits (184), Expect = 1e-15
 Identities = 42/244 (17%), Positives = 85/244 (34%), Gaps = 21/244 (8%)

Query: 313 FSDNVLACAVVVNSTVSFAKEPEKIVFHVVTDSLNLPAISMWFLLNPPGKATIQIQSIDN 372
             DN  A   V   +V  A    +I FHV+   ++    +        G   I+   ++ 
Sbjct: 7   ADDNYAAYLCVAAKSVEAAHPDTEIRFHVLDAGISEANRAAVAANLRGGGGNIRFIDVNP 66

Query: 373 FNWLSTKYNATLKKENSHDPRYTSALNHLRFYLPDVFPALNKVLLFDHDVVVQSDLGRLW 432
            ++     N           R+ S   + R  L +     +KVL  D DV+V+  L  LW
Sbjct: 67  EDFAGFPLN----------IRHISITTYARLKLGEYIADCDKVLYLDIDVLVRDSLTPLW 116

Query: 433 NIDMKGKVIGAVDTCKESEASFRRMDLFINFSDPLIAKKFDVKACTWAFGMNLFDLQEWR 492
           + D+    +GA                 I  +D             +  G+ L +L++WR
Sbjct: 117 DTDLGDNWLGASIDLFVE--RQEGYKQKIGMADGE---------YYFNAGVLLINLKKWR 165

Query: 493 KRKLTAVYHKYLQLVCEYLRFCLNLHFLALLIASLCYLLEQYILVYHNILNDYLQVSCDT 552
           +  +  +  ++++   + +++        L    +CY   ++  +  N        +   
Sbjct: 166 RHDIFKMSSEWVEQYKDVMQYQDQDILNGLFKGGVCYANSRFNFMPTNYAFMANWFASRH 225

Query: 553 NSPI 556
             P+
Sbjct: 226 TDPL 229

PyMOL of d1ga8a_

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		563
d1ga8a_		282	Galactosyltransferase LgtC {Neisseria meningitidis	100.0
d1ll2a_		263	Glycogenin {Rabbit (Oryctolagus cuniculus) [TaxId:	99.77
d1lzia_		283	Glycosyltransferase A catalytic domain {Human (Hom	93.06
d1o7qa_		287	alpha-1,3-galactosyltransferase catalytic domain {	90.37

>d1ga8a_ c.68.1.4 (A:) Galactosyltransferase LgtC {Neisseria meningitidis [TaxId: 487]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Galactosyltransferase LgtC
domain: Galactosyltransferase LgtC
species: Neisseria meningitidis [TaxId: 487]

Probab=100.00  E-value=4.8e-38  Score=312.34  Aligned_cols=209  Identities=16%  Similarity=0.216  Sum_probs=173.8

Q ss_pred             eeEEEEeCcc-h-hhHHHHHHHHhhcCCCCceEEEEEeCCCCHHHHHHHHhhCCCCCceEEEEEccCCccchhhhhhhhh
Q 008524          308 HHYAVFSDNV-L-ACAVVVNSTVSFAKEPEKIVFHVVTDSLNLPAISMWFLLNPPGKATIQIQSIDNFNWLSTKYNATLK  385 (563)
Q Consensus       308 iHIv~~sDnv-L-aasVvI~Siv~Ns~~p~~i~FHIltd~is~~~mk~wf~~n~~~~a~Ie~i~i~~~~~l~~~~~~vl~  385 (563)
                      ||||+|+|+. + +++|+|+|++.|+++ ..++|||++++++.+..+.+.......+..++++.++...     +    .
T Consensus         1 mnIv~~~D~nY~~~~~~~i~SL~~~~~~-~~~~~~il~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~-----~----~   70 (282)
T d1ga8a_           1 MDIVFAADDNYAAYLCVAAKSVEAAHPD-TEIRFHVLDAGISEANRAAVAANLRGGGGNIRFIDVNPED-----F----A   70 (282)
T ss_dssp             CEEEEEECGGGHHHHHHHHHHHHHHCTT-SCCEEEEEESSCCHHHHHHHHHTSGGGTTTEEEEECCGGG-----G----T
T ss_pred             CEEEEECCHHHHHHHHHHHHHHHHHCcC-CCEEEEEEcCCCCHHHHHHHHHHHHHcCCeEEEEECCchH-----h----c
Confidence            7999999984 3 789999999998765 5799999999999888777655545567889999887421     1    1


Q ss_pred             ccCCCCCCCCchhhhhhhcccccccCCCeEEEEecceeeccChHHHhccCCCCCEEEEeecccchhhHHHhhhhccCCCC
Q 008524          386 KENSHDPRYTSALNHLRFYLPDVFPALNKVLLFDHDVVVQSDLGRLWNIDMKGKVIGAVDTCKESEASFRRMDLFINFSD  465 (563)
Q Consensus       386 ~l~s~~~~~iS~~~y~RL~LPeLLP~ldKVLYLD~DVIVq~DLseLw~iDL~GkviaAV~Dc~~~~~~~~r~~~~Lnfsn  465 (563)
                      ... ...+++|.++|+||++|++||+++||||||+|+||.+||++||++|++++++|||.|+....  ...+...++   
T Consensus        71 ~~~-~~~~~~s~~~y~Rl~l~~~lp~~~kiiyLD~D~iv~~dl~~L~~~~~~~~~~aa~~d~~~~~--~~~~~~~~~---  144 (282)
T d1ga8a_          71 GFP-LNIRHISITTYARLKLGEYIADCDKVLYLDIDVLVRDSLTPLWDTDLGDNWLGASIDLFVER--QEGYKQKIG---  144 (282)
T ss_dssp             TSC-CCCTTCCGGGGGGGGHHHHCCSCSCEEEECSSEEECSCCHHHHTCCCTTCSEEEEECHHHHT--STTHHHHTT---
T ss_pred             ccc-ccccccCHHHHHHHHHhhhCCccceEEEecCCEEEecchHHHHhcccccceeeeehhhhhhh--hhhhHHHhC---
Confidence            111 23467899999999999999999999999999999999999999999999999999976421  111222222   


Q ss_pred             hhhhhhCCCCCCceeehhhHccHHHHHhhcHHHHHHHHHHHcccccccCCChHHHHHHhhccceecCcccccccc
Q 008524          466 PLIAKKFDVKACTWAFGMNLFDLQEWRKRKLTAVYHKYLQLVCEYLRFCLNLHFLALLIASLCYLLEQYILVYHN  540 (563)
Q Consensus       466 P~i~~~f~~~~cYFNSGVlLiDLkkWRe~nitek~l~~l~~n~~~ll~~dDQDiLN~vf~g~v~~Ld~~rWN~~g  540 (563)
                            +.+..+||||||||||+++||+.+++++++++++++...+.++ |||+||.+|.|++..||+ +||++.
T Consensus       145 ------~~~~~~yfNsGVml~n~~~~r~~~~~~~~~~~~~~~~~~~~~~-DQd~LN~~f~~~~~~L~~-~~N~~~  211 (282)
T d1ga8a_         145 ------MADGEYYFNAGVLLINLKKWRRHDIFKMSSEWVEQYKDVMQYQ-DQDILNGLFKGGVCYANS-RFNFMP  211 (282)
T ss_dssp             ------CCTTSCCEEEEEEEECHHHHTTSCHHHHHHHHHHHHTTTCSST-HHHHHHHHHTTSEEEECG-GGSBCH
T ss_pred             ------CCCCCceeecceeeechhhhhhhhHHHHHHHHHHhcccCcccC-chhHHHHHhcCCEEeCCH-HHeecc
Confidence                  3346899999999999999999999999999999998888888 699999999999999999 999864

PyMOL of d1ga8a_

>d1ll2a_ c.68.1.14 (A:) Glycogenin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}	Back information, alignment and structure

>d1lzia_ c.68.1.9 (A:) Glycosyltransferase A catalytic domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1o7qa_ c.68.1.9 (A:) alpha-1,3-galactosyltransferase catalytic domain {Cow (Bos taurus) [TaxId: 9913]}	Back information, alignment and structure