Citrus Sinensis ID: 008525

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560---

MGVRRKMALRFDLIIFTILLFASPVLSDLILSKVDRRIDLTSQIVRITSTLKVENEGSEPVSEVLLAFPDLQVKDLALLKASPHEGKGKVKSLSASLPVENVKPNGMPAALTFYAVKLPKALGKGDSYTFDVLAVFAHALRPFPEKITQADIQLVVFQESAFYLTPYVVKVQSLSVKLPESRIESYTKLENTKIHGSEIKYGPYENLPSFSYSPIVVHFESNQPFAVGQEVVREIEISHWGNVQVTEHYKLVHGGAQNKGEFSRLDYQARPTIRGASAFKYLIAKMPPRVHSVYYRDEIGNISTSNLWGDSKKTELLIEPRYPLFGGWRTAFTIGYGLPLKDFLFELEGNRFLNITFGSPMNELVIDNLIVKVVLPEGSGDISVSAPFPVNQWEETKLSHLDLTGRPVVVLQKTNVVPEHNQFFQVQAAIQQVENVINRCLTTHDKLEASLRDLSRTGDVQACKAARKAADGLLKELSKELKLVLSFLQSSSAASQILPKVEELVAKEKDLQEKVMAKHSTVVDCYEKKTGIRDSENRVAAQQQKITALRQEVENLLELIDEI

ccccccHHHHHHHHHHHHHHHcccccccEEEEEEEEEEEccccEEEEEEEEEEEEccccccEEEEEEEcccccccEEEEEEEccccccccccccccccccccccccccccEEEEEEEcccccccccEEEEEEEEEEccccccccccccccccEEEEEEEccEEcccccEEEEEEEEEEccccccccccccccEEEccEEEEcccccccccccccEEEEEEcccccEEEEEEEEEEEEEEEEEEEEEEEEEEEEccccccccccHHHHcccccccccccHHHcccccccccccEEEEccccEEEEcEEEccccEEEEEEEcccccccccccEEEEEEcccccccEEEcccEEEEEEEEccccccEEEEEEEEEEEccccccccccccccccEEEccccEEEcccccccEEEEEEcccccccccEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc

cHHHHHHHHHHHHHHHHHHHHHccccHHHEEccEEEEEEccccEEEEEEEEEEEEcccccccEEEEEccHHHHHHEEEEEEEEcccccccccccccEEEEEEccccccccEEEEEEEcccccccccEEEEEEEEEEEcccccccHHccccccEEEEEEcccccccccccEEEEEEEEEcccccccccccccccccccEEEEcccccccccccccEEEEEEccccEEEEEEEEEEEEEEccccEEEEEEEEEEcccccccccccEEHHHHccccccccHHHEEEEEcccccccEEEEEEEccEEccccccccccEEEEEEcccccccccccEEEEEEcccHHHHHHcccccEEEEEEcccccccEEEEEEEEEEEEcccccEEEEEcccccccccEEEEEEEEccccEEEEEEEccccHHccccEEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc

MGVRRKMALRFDLIIFTILLFASPVLSDLILSKVDRRIDLTSQIVRITSTLkvenegsepvsevllafpdlqVKDLALlkasphegkgkvkslsaslpvenvkpngmpaALTFYAVKLpkalgkgdsytFDVLAVFAHalrpfpekitqADIQLVVFQesafyltpyVVKVQSLsvklpesriESYTKLEntkihgseikygpyenlpsfsyspivvhfesnqpfavGQEVVREIEIShwgnvqvtEHYKLvhggaqnkgefsrldyqarptirGASAFKYLIakmpprvhsvyyrdeignistsnlwgdskktelliepryplfggwrtaftigyglplkDFLFelegnrflnitfgspmnelvIDNLIVKVVlpegsgdisvsapfpvnqweetklshldltgrpvvvlqktnvvpehnqFFQVQAAIQQVENVINRCLTTHDKLEASLRDLSRTGDVQACKAARKAADGLLKELSKELKLVLSFLQSSSAASQILPKVEELVAKEKDLQEKVmakhstvvdcyekktgirdsENRVAAQQQKITALRQEVENLLELIDEI

MGVRRKMALRFDLIIFTILLFASPVLSDLILSkvdrridltsqivritstlkvenegsepVSEVLLAFPDLQVKDLALLKasphegkgkvkslsaslPVENVKPNGMPAALTFYAVKLPKALGKGDSYTFDVLAVFAHALRPFPEKITQADIQLVVFQESAFYLTPYVVKVQSLSVKLPESRIEsytklentkihgseikYGPYENLPSFSYSPIVVHFESNQPFAVGQEVVREIEISHWGNVQVTEHYKLVHGGAQNKGEFSRLDYQARPTIRGASAFKYLIAKMPPRVHSVYYRDEIGnistsnlwgdskKTELLIEPRYPLFGGWRTAFTIGYGLPLKDFLFELEGNRFLNITFGSPMNELVIDNLIVKVVLPEGSGDISVSAPFPVNQWEETKLSHLDLTGRPVVVLQKTNVVPEHNQFFQVQAAIQQVENVINRCLTTHDKLEASLRDLSRTGDVQACKAARKAADGLLKELSKELKLVLSFLQsssaasqilpKVEELVAKEKDlqekvmakhstvvdcyekktgirdsenrVAAQQQKITALRQEVENLLELIDEI

MGVRRKMALRFDLIIFTILLFASPVLSDLILSKVDRRIDLTSQIVRITSTLKVENEGSEPVSEVLLAFPDLQVKDLALLKASPHEGKGKVKSLSASLPVENVKPNGMPAALTFYAVKLPKALGKGDSYTFDVLAVFAHALRPFPEKITQADIQLVVFQESAFYLTPYVVKVQSLSVKLPESRIESYTKLENTKIHGSEIKYGPYENLPSFSYSPIVVHFESNQPFAVGQEVVREIEISHWGNVQVTEHYKLVHGGAQNKGEFSRLDYQARPTIRGASAFKYLIAKMPPRVHSVYYRDEIGNISTSNLWGDSKKTELLIEPRYPLFGGWRTAFTIGYGLPLKDFLFELEGNRFLNITFGSPMNELVIDNLIVKVVLPEGSGDISVSAPFPVNQWEETKLSHLDLTGRPVVVLQKTNVVPEHNqffqvqaaiqqvENVINRCLTTHDKLEASLRDLSRTGDVQACKAARKAADGllkelskelklvlsflqsssaasqILPKVEELVAKEKDLQEKVMAKHSTVVDCYEKKTGIRDSENRVAAQQQKITALRQEVENLLELIDEI

******MALRFDLIIFTILLFASPVLSDLILSKVDRRIDLTSQIVRITSTLKVEN****PVSEVLLAFPDLQVKDLALL***************************MPAALTFYAVKLPKALGKGDSYTFDVLAVFAHALRPFPEKITQADIQLVVFQESAFYLTPYVVKVQSLSVKLPESRIESYTKLENTKIHGSEIKYGPYENLPSFSYSPIVVHFESNQPFAVGQEVVREIEISHWGNVQVTEHYKLVHGGAQNKGEFSRLDYQARPTIRGASAFKYLIAKMPPRVHSVYYRDEIGNISTSNLWGDSKKTELLIEPRYPLFGGWRTAFTIGYGLPLKDFLFELEGNRFLNITFGSPMNELVIDNLIVKVVLPEGSGDISVSAPFPVNQWEETKLSHLDLTGRPVVVLQKTNVVPEHNQFFQVQAAIQQVENVINRCLTTHDKLEASLRDLSRTGDVQACKAARKAADGLLKELSKELKLVLSFLQ***************************AKHSTVVDCYEK***********************************

*****KMALRFDLIIFTILLFASPVLSDLILSKVDRRIDLTSQIVRITSTLKVENEGSEPVSEVLLAFPDLQVKDLALLKASPHE****************VKPNGMPAALTFYAVKLPKALGKGDSYTFDVLAVFAHALRPFPEKITQADIQLVVFQESAFYLTPYVVKVQSLSVKLPESRI***************IKYGPYENLPSFSYSPIVVHFESNQPFAVGQEVVREIEISHWGNVQVTEHYKLVHGGAQNKGEFSRLDYQARPTIRGASAFKYLIAKMPPRVHSVYYRDEIGNISTSNLWGDSKKTELLIEPRYPLFGGWRTAFTIGYGLPLKDFLFELEGNRFLNITFGSPMNELVIDNLIVKVVLPEGSGDISVSAPFPVNQWEETKLSHLDLTGRPVVVLQKTNVVPEHNQFFQVQAAIQQVENVINRCLTTHDKLEASLRDLSRTGD***********DGLLKELSKELKLVLS***********************D***KVMAKHSTVVDCYE***********************QEVENLLELID**

MGVRRKMALRFDLIIFTILLFASPVLSDLILSKVDRRIDLTSQIVRITSTLKVENEGSEPVSEVLLAFPDLQVKDLALLKASP**********SASLPVENVKPNGMPAALTFYAVKLPKALGKGDSYTFDVLAVFAHALRPFPEKITQADIQLVVFQESAFYLTPYVVKVQSLSVKLPESRIESYTKLENTKIHGSEIKYGPYENLPSFSYSPIVVHFESNQPFAVGQEVVREIEISHWGNVQVTEHYKLVHGGAQNKGEFSRLDYQARPTIRGASAFKYLIAKMPPRVHSVYYRDEIGNISTSNLWGDSKKTELLIEPRYPLFGGWRTAFTIGYGLPLKDFLFELEGNRFLNITFGSPMNELVIDNLIVKVVLPEGSGDISVSAPFPVNQWEETKLSHLDLTGRPVVVLQKTNVVPEHNQFFQVQAAIQQVENVINRCLTTHDKLEASLRDLSRTGDVQACKAARKAADGLLKELSKELKLVLSFLQSSSAASQILPKVEELVAKEKDLQEKVMAKHSTVVDCYEKKTGIRDS**********ITALRQEVENLLELIDEI

iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

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SSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

SSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		563	2.2.26 [Sep-21-2011]
Q9SFX3		614	Dolichyl-diphosphooligosa	yes	no	0.955	0.876	0.579	0.0
Q0DJC5		615	Dolichyl-diphosphooligosa	yes	no	0.950	0.869	0.554	1e-180
Q9ZUA0		464	Dolichyl-diphosphooligosa	no	no	0.758	0.920	0.510	1e-120
B9FDT1		473	Dolichyl-diphosphooligosa	no	no	0.694	0.826	0.538	1e-117
Q4R4T0		607	Dolichyl-diphosphooligosa	N/A	no	0.905	0.840	0.311	1e-71
Q91YQ5		608	Dolichyl-diphosphooligosa	yes	no	0.705	0.652	0.379	2e-71
P04843		607	Dolichyl-diphosphooligosa	yes	no	0.905	0.840	0.311	2e-71
Q5RFB6		607	Dolichyl-diphosphooligosa	yes	no	0.905	0.840	0.310	3e-71
Q9GMB0		608	Dolichyl-diphosphooligosa	yes	no	0.914	0.847	0.317	6e-71
P07153		605	Dolichyl-diphosphooligosa	yes	no	0.705	0.656	0.369	2e-69

>sp\|Q9SFX3\|OST1A_ARATH Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1A OS=Arabidopsis thaliana GN=OST1A PE=2 SV=1	Back alignment and function desciption

 Score =  676 bits (1745), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 346/597 (57%), Positives = 425/597 (71%), Gaps = 59/597 (9%)

Query: 23  SPVLSDLILSKVDRRIDLTSQIVRITSTLKVENEGSEPVSEVLLAFPDLQVKDLALLKAS 82
           +P  SDL+LSKV+RRID+TSQI R+T TLKV N GSE VSE  L FP     +LA L  +
Sbjct: 21  TPAFSDLVLSKVERRIDVTSQIARVTKTLKVVNSGSESVSEFALTFPKFLGNNLAYLSVA 80

Query: 83  PHEGKGKVKSLSASLPVENVKPNGMPAALTFYAVKLPKALGKGDSYTFDVLAVFAHALRP 142
           P EGKGK K    +L V      G+P +++ Y+V LPK L KGD+ T +V+A F + L+P
Sbjct: 81  PSEGKGKSKRTLVNLSVREADQKGLPDSISVYSVALPKPLSKGDTLTLEVVAAFTNVLQP 140

Query: 143 FPEKITQADIQLVVFQESAFYLTPYVVKVQSLSVKLPESRIESYTKLENTKIHGSEIKYG 202
           FPEKITQ +I LV+ QESA YL+PY V+ QSLS+KLP +RIESYTK ENTK+ GSE+KYG
Sbjct: 141 FPEKITQGEIHLVMLQESAQYLSPYAVESQSLSIKLPNARIESYTKFENTKLQGSELKYG 200

Query: 203 PYENLPSFSYSPIVVHFESNQPFAVGQEVVREIEISHWGNVQVTEHYKLVHGGAQNKGEF 262
           PY+NL S+SYSPIVVHFES   FAV +++VREIE+SHWGNVQVTE+Y +VH GAQ KGEF
Sbjct: 201 PYKNLQSYSYSPIVVHFESKAAFAVAEKLVREIEVSHWGNVQVTENYNVVHRGAQLKGEF 260

Query: 263 SRLDYQARPTIRGASAFKYLIAKMPPRVHSVYYRDEIGNISTSNLWGDSKKTELLIEPRY 322
           SRLD+QARP  RGASAF++L+A++PPR HS+YYRD+IGNISTS +  DSKKTELLIEPR+
Sbjct: 261 SRLDFQARPNPRGASAFRHLLARLPPRAHSIYYRDDIGNISTSEMKSDSKKTELLIEPRF 320

Query: 323 PLFGGWRTAFTIGYGLPLKDFLFELEGNRFLNITFGSPMNELVIDNLIVKVVLPEGSGDI 382
           PLFGGW+T FTIGYGLPL DFLF  EG RFLNI+FGSP+ +LV + LIV+VVLPEGS DI
Sbjct: 321 PLFGGWKTFFTIGYGLPLTDFLFASEGKRFLNISFGSPILDLVTEKLIVQVVLPEGSKDI 380

Query: 383 SVSAPFPVNQWEETKLSHLDLTGRPVVVLQKTNVVPEHNQFFQVQAAIQQVENVINR--- 439
           SV+ PF V Q +E K SHLD+ GRPVVVL+K NVVP+HNQ  QV      + N+++    
Sbjct: 381 SVTTPFAVKQSQEIKYSHLDIAGRPVVVLEKNNVVPDHNQHIQVYYKFSNI-NLLSEPLM 439

Query: 440 -----------CLT-------------------THDKLEASLRDLSRTGDVQAC------ 463
                      C+                      D++ A+L+++     VQ C      
Sbjct: 440 LISGFFILFITCIIYTRADISISKSSPSYLAKLQWDEVLATLQEVQSI--VQKCLATHDK 497

Query: 464 -----------------KAARKAADGLLKELSKELKLVLSFLQSSSAASQILPKVEELVA 506
                            KAARK+ D LLK+LSKELK +L FLQS  +AS I PKVEELV 
Sbjct: 498 LEASLRDLSRTGDIQTCKAARKSTDSLLKDLSKELKPLLGFLQSFPSASHISPKVEELVV 557

Query: 507 KEKDLQEKVMAKHSTVVDCYEKKTGIRDSENRVAAQQQKITALRQEVENLLELIDEI 563
           KEK+LQEK+MAKH+TVV+ YEKK+  RD ENR+A+QQQKI ALRQE+E+LLE IDEI
Sbjct: 558 KEKELQEKLMAKHTTVVEGYEKKSSGRDIENRIASQQQKIIALRQEIEDLLEFIDEI 614

Essential subunit of the N-oligosaccharyl transferase (OST) complex which catalyzes the transfer of a high mannose oligosaccharide from a lipid-linked oligosaccharide donor to an asparagine residue within an Asn-X-Ser/Thr consensus motif in nascent polypeptide chains.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 4EC: .EC: 9EC: 9EC: .EC: 1EC: 8

>sp\|Q0DJC5\|OST1A_ORYSJ Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1A OS=Oryza sativa subsp. japonica GN=OST1A PE=2 SV=1	Back alignment and function description

>sp\|Q9ZUA0\|OST1B_ARATH Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1B OS=Arabidopsis thaliana GN=OST1B PE=2 SV=1	Back alignment and function description

>sp\|B9FDT1\|OST1B_ORYSJ Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1B OS=Oryza sativa subsp. japonica GN=OST1B PE=2 SV=1	Back alignment and function description

>sp\|Q4R4T0\|RPN1_MACFA Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 OS=Macaca fascicularis GN=RPN1 PE=2 SV=1	Back alignment and function description

>sp\|Q91YQ5\|RPN1_MOUSE Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 OS=Mus musculus GN=Rpn1 PE=2 SV=1	Back alignment and function description

>sp\|P04843\|RPN1_HUMAN Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 OS=Homo sapiens GN=RPN1 PE=1 SV=1	Back alignment and function description

>sp\|Q5RFB6\|RPN1_PONAB Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 OS=Pongo abelii GN=RPN1 PE=2 SV=1	Back alignment and function description

>sp\|Q9GMB0\|RPN1_PIG Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 OS=Sus scrofa GN=RPN1 PE=1 SV=1	Back alignment and function description

>sp\|P07153\|RPN1_RAT Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 OS=Rattus norvegicus GN=Rpn1 PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		563
225457618		610	PREDICTED: dolichyl-diphosphooligosaccha	0.989	0.913	0.701	0.0
224061851		615	predicted protein [Populus trichocarpa]	0.989	0.905	0.666	0.0
255539294		612	ribophorin, putative [Ricinus communis]	0.985	0.906	0.669	0.0
224086092		615	predicted protein [Populus trichocarpa]	0.957	0.876	0.679	0.0
388499090		617	unknown [Medicago truncatula]	0.966	0.881	0.677	0.0
357467147		616	Dolichyl-diphosphooligosaccharide-protei	0.966	0.883	0.675	0.0
356517213		613	PREDICTED: dolichyl-diphosphooligosaccha	0.976	0.897	0.661	0.0
449452999		610	PREDICTED: dolichyl-diphosphooligosaccha	0.989	0.913	0.670	0.0
356508519		619	PREDICTED: dolichyl-diphosphooligosaccha	0.975	0.886	0.660	0.0
326531242		613	predicted protein [Hordeum vulgare subsp	0.959	0.880	0.589	0.0

>gi\|225457618\|ref\|XP_002274236.1\| PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 [Vitis vinifera] gi\|297745585\|emb\|CBI40750.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

 Score =  867 bits (2241), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 428/610 (70%), Positives = 488/610 (80%), Gaps = 53/610 (8%)

Query: 7   MALRFDLIIFTILLFASPVLSDLILSKVDRRIDLTSQIVRITSTLKVENEGSEPVSEVLL 66
           M  RFDL I  I + + PVLSDLILSKVDRRIDLTSQ+VRITSTLKVEN G++PVSEVLL
Sbjct: 1   MGFRFDLFIVLIAILSVPVLSDLILSKVDRRIDLTSQVVRITSTLKVENSGNDPVSEVLL 60

Query: 67  AFPDLQVKDLALLKASPHEGKGKVKSLSASLPVENVKPNGMPAALTFYAVKLPKALGKGD 126
           AFP+ Q K+LA L AS  EGKGK K  ++SLPVE V P GMP AL FY+V LPK LGKG+
Sbjct: 61  AFPEHQEKNLAYLTASFREGKGKGKGSTSSLPVEVVHPQGMPPALVFYSVSLPKGLGKGE 120

Query: 127 SYTFDVLAVFAHALRPFPEKITQADIQLVVFQESAFYLTPYVVKVQSLSVKLPESRIESY 186
           S T DVL VF H+L+PFP++ITQAD QLVVFQ+S  YL+PY VK QSLSVKLP++RIESY
Sbjct: 121 SLTLDVLVVFTHSLKPFPKEITQADFQLVVFQDSGHYLSPYEVKFQSLSVKLPDARIESY 180

Query: 187 TKLENTKIHGSEIKYGPYENLPSFSYSPIVVHFESNQPFAVGQEVVREIEISHWGNVQVT 246
           T+LENTK  GSEIKYGPYEN P FSYSPIVVHFE NQPFAV +++VREIEISHWGNVQVT
Sbjct: 181 TRLENTKTVGSEIKYGPYENHPPFSYSPIVVHFEQNQPFAVAEQLVREIEISHWGNVQVT 240

Query: 247 EHYKLVHGGAQNKGEFSRLDYQARPTIRGASAFKYLIAKMPPRVHSVYYRDEIGNISTSN 306
           EHYKL+H GAQ+KGEFSRLDYQARP +RGASAF++L+AK+PPR HSVY+RDEIGNISTS+
Sbjct: 241 EHYKLIHAGAQSKGEFSRLDYQARPHVRGASAFRHLVAKLPPRAHSVYFRDEIGNISTSH 300

Query: 307 LWGDSKKTELLIEPRYPLFGGWRTAFTIGYGLPLKDFLFELEGNRFLNITFGSPMNELVI 366
           LWGD KKTEL IEPRYP+FGGWRT+F IGYGLPL+DFLFE  G RFLNITFG PMNE+VI
Sbjct: 301 LWGDLKKTELEIEPRYPMFGGWRTSFFIGYGLPLQDFLFESGGKRFLNITFGCPMNEVVI 360

Query: 367 DNLIVKVVLPEGSGDISVSAPFPVNQWEETKLSHLDLTGRPVVVLQKTNVVPEHNQFFQV 426
           DNLIVKVVLPEGS DISVSAPF V QW+ETKLSHLD+ GRPV VL+KTNVVPEHNQ FQV
Sbjct: 361 DNLIVKVVLPEGSRDISVSAPFAVKQWQETKLSHLDIVGRPVAVLEKTNVVPEHNQHFQV 420

Query: 427 -----------------------------------------------------QAAIQQV 433
                                                                QAAIQQV
Sbjct: 421 YYKFNNISLLREPLMLISGFFFLFVTCIVYMHVDMSISKSSASYVMKLLWEEIQAAIQQV 480

Query: 434 ENVINRCLTTHDKLEASLRDLSRTGDVQACKAARKAADGLLKELSKELKLVLSFLQSSSA 493
            ++I+RCL+ HDKLEASLRDLSRTGDVQACKAARKA+DG LKELSKEL+ +L+FLQSS  
Sbjct: 481 HDIISRCLSIHDKLEASLRDLSRTGDVQACKAARKASDGQLKELSKELRPLLAFLQSSPQ 540

Query: 494 ASQILPKVEELVAKEKDLQEKVMAKHSTVVDCYEKKTGIRDSENRVAAQQQKITALRQEV 553
           A+QILPKVEELVAKE++LQEK+M KH+TV D YEKK+G ++ ENR+A+QQQKI ALRQEV
Sbjct: 541 AAQILPKVEELVAKERELQEKLMLKHTTVADSYEKKSGGKEIENRIASQQQKIVALRQEV 600

Query: 554 ENLLELIDEI 563
           ++LL+ IDEI
Sbjct: 601 DDLLDYIDEI 610

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|224061851\|ref\|XP_002300630.1\| predicted protein [Populus trichocarpa] gi\|118483703\|gb\|ABK93745.1\| unknown [Populus trichocarpa] gi\|222842356\|gb\|EEE79903.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|255539294\|ref\|XP_002510712.1\| ribophorin, putative [Ricinus communis] gi\|223551413\|gb\|EEF52899.1\| ribophorin, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|224086092\|ref\|XP_002307811.1\| predicted protein [Populus trichocarpa] gi\|222857260\|gb\|EEE94807.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|388499090\|gb\|AFK37611.1\| unknown [Medicago truncatula]	Back alignment and taxonomy information

>gi\|357467147\|ref\|XP_003603858.1\| Dolichyl-diphosphooligosaccharide-protein glycosyltransferase subunit [Medicago truncatula] gi\|355492906\|gb\|AES74109.1\| Dolichyl-diphosphooligosaccharide-protein glycosyltransferase subunit [Medicago truncatula]	Back alignment and taxonomy information

>gi\|356517213\|ref\|XP_003527283.1\| PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1-like [Glycine max]	Back alignment and taxonomy information

>gi\|449452999\|ref\|XP_004144246.1\| PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1-like [Cucumis sativus] gi\|449489357\|ref\|XP_004158288.1\| PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|356508519\|ref\|XP_003523003.1\| PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1-like [Glycine max]	Back alignment and taxonomy information

>gi\|326531242\|dbj\|BAK04972.1\| predicted protein [Hordeum vulgare subsp. vulgare]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		563
TAIR\|locus:2014579		614	AT1G76400 "AT1G76400" [Arabido	0.726	0.666	0.652	4.3e-182
TAIR\|locus:2065378		464	AT2G01720 "AT2G01720" [Arabido	0.719	0.872	0.525	5.9e-112
UNIPROTKB\|A3KN04		609	RPN1 "Uncharacterized protein"	0.694	0.642	0.382	3.7e-70
WB\|WBGene00020683		586	ribo-1 [Caenorhabditis elegans	0.705	0.677	0.372	7.7e-70
ZFIN\|ZDB-GENE-030131-4286		598	rpn1 "ribophorin I" [Danio rer	0.721	0.678	0.374	8e-69
UNIPROTKB\|E2RQ08		607	RPN1 "Uncharacterized protein"	0.694	0.644	0.380	1e-68
MGI\|MGI:98084		608	Rpn1 "ribophorin I" [Mus muscu	0.694	0.643	0.382	1e-68
UNIPROTKB\|P04843		607	RPN1 "Dolichyl-diphosphooligos	0.694	0.644	0.382	2.1e-68
UNIPROTKB\|E1C0F1		601	RPN1 "Dolichyl-diphosphooligos	0.666	0.623	0.395	2.7e-68
UNIPROTKB\|F1SPG2		608	RPN1 "Dolichyl-diphosphooligos	0.694	0.643	0.385	3.5e-68

TAIR\|locus:2014579 AT1G76400 "AT1G76400" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1406 (500.0 bits), Expect = 4.3e-182, Sum P(2) = 4.3e-182
 Identities = 267/409 (65%), Positives = 324/409 (79%)

Query:    13 LIIFTILLFASPVLSDLILSKVDRRIDLTSQIVRITSTLKVENEGSEPVSEVLLAFPDLQ 72
             L++  I L A+P  SDL+LSKV+RRID+TSQI R+T TLKV N GSE VSE  L FP   
Sbjct:    11 LLLLAIALLATPAFSDLVLSKVERRIDVTSQIARVTKTLKVVNSGSESVSEFALTFPKFL 70

Query:    73 VKDLALLKASPHEGKGKVKSLSASLPVENVKPNGMPAALTFYAVKLPKALGKGDSYTFDV 132
               +LA L  +P EGKGK K    +L V      G+P +++ Y+V LPK L KGD+ T +V
Sbjct:    71 GNNLAYLSVAPSEGKGKSKRTLVNLSVREADQKGLPDSISVYSVALPKPLSKGDTLTLEV 130

Query:   133 LAVFAHALRPFPEKITQADIQLVVFQESAFYLTPYVVKVQSLSVKLPESRIESYTKLENT 192
             +A F + L+PFPEKITQ +I LV+ QESA YL+PY V+ QSLS+KLP +RIESYTK ENT
Sbjct:   131 VAAFTNVLQPFPEKITQGEIHLVMLQESAQYLSPYAVESQSLSIKLPNARIESYTKFENT 190

Query:   193 KIHGSEIKYGPYENLPSFSYSPIVVHFESNQPFAVGQEVVREIEISHWGNVQVTEHYKLV 252
             K+ GSE+KYGPY+NL S+SYSPIVVHFES   FAV +++VREIE+SHWGNVQVTE+Y +V
Sbjct:   191 KLQGSELKYGPYKNLQSYSYSPIVVHFESKAAFAVAEKLVREIEVSHWGNVQVTENYNVV 250

Query:   253 HGGAQNKGEFSRLDYQARPTIRGASAFKYLIAKMPPRVHSVYYRDEIGNISTSNLWGDSK 312
             H GAQ KGEFSRLD+QARP  RGASAF++L+A++PPR HS+YYRD+IGNISTS +  DSK
Sbjct:   251 HRGAQLKGEFSRLDFQARPNPRGASAFRHLLARLPPRAHSIYYRDDIGNISTSEMKSDSK 310

Query:   313 KTELLIEPRYPLFGGWRTAFTIGYGLPLKDFLFELEGNRFLNITFGSPMNELVIDNLIVK 372
             KTELLIEPR+PLFGGW+T FTIGYGLPL DFLF  EG RFLNI+FGSP+ +LV + LIV+
Sbjct:   311 KTELLIEPRFPLFGGWKTFFTIGYGLPLTDFLFASEGKRFLNISFGSPILDLVTEKLIVQ 370

Query:   373 VVLPEGSGDISVSAPFPVNQWEETKLSHLDLTGRPVVVLQKTNVVPEHN 421
             VVLPEGS DISV+ PF V Q +E K SHLD+ GRPVVVL+K NVVP+HN
Sbjct:   371 VVLPEGSKDISVTTPFAVKQSQEIKYSHLDIAGRPVVVLEKNNVVPDHN 419

GO:0004576 "oligosaccharyl transferase activity" evidence=ISS

GO:0004579 "dolichyl-diphosphooligosaccharide-protein glycotransferase activity" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA;IDA

GO:0006486 "protein glycosylation" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=RCA

GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0009086 "methionine biosynthetic process" evidence=RCA

GO:0030244 "cellulose biosynthetic process" evidence=RCA

TAIR\|locus:2065378 AT2G01720 "AT2G01720" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|A3KN04 RPN1 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

WB\|WBGene00020683 ribo-1 [Caenorhabditis elegans (taxid:6239)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-030131-4286 rpn1 "ribophorin I" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

UNIPROTKB\|E2RQ08 RPN1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

MGI\|MGI:98084 Rpn1 "ribophorin I" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|P04843 RPN1 "Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|E1C0F1 RPN1 "Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|F1SPG2 RPN1 "Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5RFB6	RPN1_PONAB	2, ., 4, ., 1, ., 1, 1, 9	0.3101	0.9058	0.8401	yes	no
Q9SFX3	OST1A_ARATH	2, ., 4, ., 9, 9, ., 1, 8	0.5795	0.9555	0.8762	yes	no
Q9GMB0	RPN1_PIG	2, ., 4, ., 1, ., 1, 1, 9	0.3173	0.9147	0.8470	yes	no
P04843	RPN1_HUMAN	2, ., 4, ., 1, ., 1, 1, 9	0.3118	0.9058	0.8401	yes	no
Q0DJC5	OST1A_ORYSJ	2, ., 4, ., 9, 9, ., 1, 8	0.5542	0.9502	0.8699	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.4.1	LOW CONFIDENCE prediction!
4th Layer	2.4.1.119	0.824

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		563
pfam04597		429	pfam04597, Ribophorin_I, Ribophorin I	1e-153

>gnl\|CDD\|218165 pfam04597, Ribophorin_I, Ribophorin I	Back alignment and domain information

 Score =  444 bits (1145), Expect = e-153
 Identities = 169/405 (41%), Positives = 238/405 (58%), Gaps = 14/405 (3%)

Query: 28  DLILSKVDRRIDLTSQIVRITSTLKVENEGSEPVSEVLLAFPDLQVKDLALLKASPHEGK 87
                 V+R IDLT   V+ T  + ++N G EP SE   AFP  +  +LA L A   +  
Sbjct: 1   VWENVNVERTIDLTKSYVKETIKITIKNIGDEPQSEYYFAFPPDEADNLAGLSAK--DKD 58

Query: 88  GKVKSLSASLPVENVKPNGMPAALTFYAVKLPKALGKGDSYTFDVLAVFAHALRPFPEKI 147
            K K     + VEN    G      ++ + LPK L  G+  T  V  V  + L+P P +I
Sbjct: 59  AKEKGKFEPIEVENGSDTG------YFKITLPKPLAPGEQVTLKVSYVLTNPLKPLPAEI 112

Query: 148 TQADIQLVVFQESAFYLTPYVVKVQSLSVKLPESRIESYTKLENTKIH--GSEIKYGPYE 205
           TQ++ QL++++ +A++ +PY  K Q   +K P   I SYTK  N      G+ + YGPYE
Sbjct: 113 TQSEKQLLLYETNAYFYSPYPTKKQKTKIKGPSGNILSYTKTPNLPPTRQGNTLTYGPYE 172

Query: 206 NLPSFSYSPIVVHFESNQPFAVGQEVVREIEISHWGNVQVTEHYKLVHGGAQNKGEFSRL 265
           N+P+FS  PI VH+E+N+P      + R+IE+SHWGN+ V E+Y+L + GA+ KG FSR+
Sbjct: 173 NVPAFSLEPITVHYENNKPLITVTNLERDIEVSHWGNIAVEEYYELTNNGAKLKGGFSRV 232

Query: 266 DYQ-ARPTIRGASAFKYLIAKMPPRVHSVYYRDEIGNISTSNLWGDSKKTELLIEPRYPL 324
           DYQ    + R +SA K L   +P     VYY DEIGN+STS +  D    EL ++PR+PL
Sbjct: 233 DYQKGSYSTRNSSALKSLKTPLPAGATDVYYTDEIGNVSTSRVREDKDSAELELKPRFPL 292

Query: 325 FGGWRTAFTIGYGLPLKDFLFELEGNRF-LNITFGSPMNELVIDNLIVKVVLPEGSGDIS 383
           FGGW+  FTIG+ LPL DFL +   N + L + F +   ++V DN+ +KV+LPEG+ DI 
Sbjct: 293 FGGWKYNFTIGWNLPLSDFLRKDGDNTYVLKVPFLNGPKDVVYDNVTLKVILPEGAEDIK 352

Query: 384 VSAPFPVNQWE-ETKLSHLDLTGRPVVVLQKTNVVPEHN-QFFQV 426
           V  PFP++  E E + S+LD  GRPVV L+K N+V EH  Q   V
Sbjct: 353 VETPFPIDSVELELEKSYLDTKGRPVVTLEKKNLVDEHRDQDVLV 397

Ribophorin I is an essential subunit of oligosaccharyltransferase (OST), which is also known as Dolichyl-diphosphooligosaccharide--protein glycosyltransferase, (EC:2.4.1.119). OST catalyzes the transfer of an oligosaccharide from dolichol pyrophosphate to selected asparagine residues of nascent polypeptides as they are translocated into the lumen of the rough endoplasmic reticulum. Ribophorin I and OST48 are though to be responsible for OST catalytic activity. Both yeast and mammalian proteins are glycosylated but the sites are not conserved. Glycosylation may contribute towards general solubility but is unlikely to be involved in a specific biochemical function Most family members are predicted to have a transmembrane helix at the C terminus of this region. Length = 429

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		563
KOG2291		602	consensus Oligosaccharyltransferase, alpha subunit	100.0
PF04597		432	Ribophorin_I: Ribophorin I; InterPro: IPR007676 Ri	100.0
PF14966		97	DNA_repr_REX1B: DNA repair REX1-B	97.15
PF08487		118	VIT: Vault protein inter-alpha-trypsin domain; Int	93.62
smart00609		130	VIT Vault protein Inter-alpha-Trypsin domain.	90.09
COG3883		265	Uncharacterized protein conserved in bacteria [Fun	85.88
PRK11637		428	AmiB activator; Provisional	82.9

>KOG2291 consensus Oligosaccharyltransferase, alpha subunit (ribophorin I) [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

Probab=100.00  E-value=1.2e-145  Score=1154.16  Aligned_cols=529  Identities=43%  Similarity=0.656  Sum_probs=498.3

Q ss_pred             ccCccCCceEEeeEEEEEEcCCCeEEEEEEEEEEeCCCCCeeEEEEEeCCccccceeEEEEeecCCCCccccccccccee
Q 008525           21 FASPVLSDLILSKVDRRIDLTSQIVRITSTLKVENEGSEPVSEVLLAFPDLQVKDLALLKASPHEGKGKVKSLSASLPVE  100 (563)
Q Consensus        21 ~~~~~~~~~~n~~v~RtIDL~~~~vk~t~~i~vkN~g~~p~~~y~~~l~~~~~~~ls~i~a~~~~~k~k~~~~~~~l~v~  100 (563)
                      |++.+.++|+|.|++|||||++||||++++++++|+|++|+++|.+++++.+..+||+++|...+++++.   ..++++.
T Consensus        23 ~a~~a~~~w~n~nv~RTIDlsS~ivK~tt~l~i~N~g~ePatey~~a~~~~~~~~la~ls~~~~~g~~~~---~l~~s~~   99 (602)
T KOG2291|consen   23 AASSAEQDWVNVNVERTIDLSSQIVKVTTELSIENIGSEPATEYLLAFEKELGASLAFLSVAFTEGKKKT---LLKLSVN   99 (602)
T ss_pred             cccCCccccccccceEEEehhhhhhhheeEEEEEecCCCchheEEEeccCccccceeEEEEeeccCcccc---ccccccC
Confidence            4667889999999999999999999999999999999999999999999999999999999988877552   3456777


Q ss_pred             eecCCCCCCcceEEEEEcCCCCCCCCeEEEEEEEEecccccccCcccccCCceeEEEeecceecCcceeeEEEEEEEecC
Q 008525          101 NVKPNGMPAALTFYAVKLPKALGKGDSYTFDVLAVFAHALRPFPEKITQADIQLVVFQESAFYLTPYVVKVQSLSVKLPE  180 (563)
Q Consensus       101 ~~~~~~~~~~~~~y~V~Lp~pl~pg~~~tl~v~~v~~~~l~P~P~~I~Q~e~Q~v~f~~n~y~~SpY~T~~q~t~vkl~s  180 (563)
                      +.+.++. ++ .+|.|+||.||.||+++||.|+++++|.++|+|++|+|+|+|+|+|.+|+|++|||.|++|+|+|++||
T Consensus       100 ~~~~~~~-~~-~~y~v~lp~pl~pge~vTl~V~~~~t~vl~P~Pe~I~QsE~Q~vv~~tn~~~~SpY~Tk~Q~t~ikl~S  177 (602)
T KOG2291|consen  100 PPKKDGA-SE-RVYTVTLPNPLSPGEKVTLIVEAVLTHVLRPLPEEITQSEEQFVVYETNAYLLSPYDTKSQSTTIKLPS  177 (602)
T ss_pred             CcccCCC-cc-ceEEEeCCCCCCCCceEEEEEEeecccCcccChhhhCcCceeeEEEeccccccCcccccceeEEEEccc
Confidence            7766653 33 799999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcceeeccCCceeeCCeEEeccCCCCCCCCccCEEEEEeeccceeEEeEEEEEEEEeeeeeEEEEEEEEEEEcCCCCCC
Q 008525          181 SRIESYTKLENTKIHGSEIKYGPYENLPSFSYSPIVVHFESNQPFAVGQEVVREIEISHWGNVQVTEHYKLVHGGAQNKG  260 (563)
Q Consensus       181 ~~i~syT~~~~~~~~g~~i~YGP~~~v~p~s~~pi~Vhyenn~Pf~~v~~L~R~IEVSHWGNIavEE~y~L~N~GA~Lkg  260 (563)
                      ++|++||+.++.+++|+.++||||+|+|+|+++|+.||||||.||+++++|+|+|||||||||||||+|+|+|+||+|||
T Consensus       178 s~ies~T~~~~~k~~gn~l~yGPyeni~afs~~pl~VhYEnnaPf~~v~~L~R~IevSHWgnIqVeE~~~lth~gAkLkg  257 (602)
T KOG2291|consen  178 SKIESYTTVEPSKRSGNELKYGPYENIPAFSQEPLVVHYENNAPFVTVENLEREIEVSHWGNIQVEENYELTHKGAKLKG  257 (602)
T ss_pred             ccceeccccCcccccCceeeecCccccccccCCceEEEEecCCCcceeeeEEEEEEeecceeeEEEEEEEEEecceeccC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcchhhhccCcCcccccceeeeeeccCCcccCeeEEeccceeeeeeeecCCCeeEEEEccCCcccCCcceeEEEeecCCc
Q 008525          261 EFSRLDYQARPTIRGASAFKYLIAKMPPRVHSVYYRDEIGNISTSNLWGDSKKTELLIEPRYPLFGGWRTAFTIGYGLPL  340 (563)
Q Consensus       261 ~FSR~dyq~~~~~~~~~a~~~l~~~LP~~a~d~YY~D~IGNISTS~~r~~~~~~~Lel~PRfPLfGGWk~~FtiGyn~pl  340 (563)
                      +|||+|||+++..+|.++++++.+.||++|+|+||||+||||||||+|.+.++++|||+|||||||||||+|+||||+|+
T Consensus       258 ~FSR~d~q~~~~~~g~sai~~l~~~LP~~A~dvYYrDeiGNISTShmr~~~~~~eleirPRfPlFGGWkt~ftiGy~lP~  337 (602)
T KOG2291|consen  258 PFSRLDYQKQRRTRGASAINSLKTVLPARAKDVYYRDEIGNISTSHMRIDPDKTELEIRPRFPLFGGWKTNFTIGYNLPL  337 (602)
T ss_pred             CcchHhhhhcCCcCcchHHHHHHhhCCCccCceeeecccCcEehhhhcccCccceEEeccCCccccCceeeEEEecCCcH
Confidence            99999999997778999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccceeecCCeEEEEEeec-CCCCceEEEEEEEEEEcCCCCccccccCCCcee-ecceeeEEeccCCCCcEEEEEecCCCc
Q 008525          341 KDFLFELEGNRFLNITFG-SPMNELVIDNLIVKVVLPEGSGDISVSAPFPVN-QWEETKLSHLDLTGRPVVVLQKTNVVP  418 (563)
Q Consensus       341 ~~fL~~~~~~yiL~vpf~-~~~~d~~~d~~~vkIiLPEGA~~I~v~~P~pv~-~~~~~~~tYLDt~GRpvVvl~~~Nlv~  418 (563)
                      ++||++.|++|.|+++|. |++++++||+++++|+|||||+||++.+||+++ .++++++|||||.||||++++|+|+|+
T Consensus       338 ~eyl~~~g~ry~L~~~~~~~~~d~~V~dkl~ikvvLPEGak~i~i~tP~~is~~p~e~~~syLDt~GR~Vvv~ek~Nvv~  417 (602)
T KOG2291|consen  338 EEYLFSKGRRYALKIILIDHIFDDTVYDKLTIKVVLPEGAKDIEIDTPYEISRSPIELKYSYLDTNGRPVVVLEKNNVVP  417 (602)
T ss_pred             HHHhhccCceeEEccccccCCCccceeeeEEEEEEccCCCcccccccceeeccCchhhhhhhhhccCcEEEEEEccccCC
Confidence            999999999999999995 578999999999999999999999999999998 669999999999999999999999999


Q ss_pred             cCCceEEe-------------hhhHHHHHHHHHHHHHh-h-----------------------------------HHHHH
Q 008525          419 EHNQFFQV-------------QAAIQQVENVINRCLTT-H-----------------------------------DKLEA  449 (563)
Q Consensus       419 eh~~~~~V-------------l~i~~~f~~lF~~~i~~-~-----------------------------------~~~~~  449 (563)
                      .|+++|+|             |+|+++||++|++|++| |                                   ++|++
T Consensus       418 ~h~~~i~v~Y~f~~~sml~ePL~i~a~ffilf~~~i~y~~~d~~is~~ps~~a~~r~~~~~~~~~~~v~~~~~~y~~l~~  497 (602)
T KOG2291|consen  418 DHNQDIVVHYTFSKSSMLQEPLLIIAAFFILFFAVIVYVRLDFNISSDPSMSATRRVFQILLQLALEVNKCDVMYCSLSE  497 (602)
T ss_pred             CCCccEEEEEEechhHhhhccHHHHHHHHHHHHHHheeeecceeeccChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999             99999999999999999 3                                   89999


Q ss_pred             HHhhhcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccchhHhHHHHHHHHHHHHHHHHhhccceecccccc
Q 008525          450 SLRDLSRTGDVQACKAARKAADGLLKELSKELKLVLSFLQSSSAASQILPKVEELVAKEKDLQEKVMAKHSTVVDCYEKK  529 (563)
Q Consensus       450 ~~~dls~~~d~~~~~~~~k~~~~~~k~~~~~~~~~~~~l~~~~~~~~~~~kv~e~~~~~~~~~~~~~~~~~~~~~~~e~~  529 (563)
                      ++.+++.++|.+.|++|||..+.++|++++++.++++.||+++ ++.+++|++||.+.+| ++.+.+..+-..|...+|+
T Consensus       498 ~~~~~~~t~~~~~~~~~~ks~~~~~~~~~~~~~~~~~~l~t~~-~~~~~~~~~~l~~~~k-~~~~~~~~~~~~v~g~~~k  575 (602)
T KOG2291|consen  498 GRFRYKNTENIPTLGGAKKSSPLEKKDLASELVPLPSPLKTSD-STCVANKLPELSCSVK-LVPKTSVMQKHGVEGNGKK  575 (602)
T ss_pred             HHhhccccCCCccccchhhcChhhhhhhhcccCCCcccCCCCC-cchhhhhhhhhhhhhc-cchhHHHHHHHhhcccccc
Confidence            9999999999999999999999999999999999999999996 6999999999999999 7777778888888777777


Q ss_pred             ccchhhhhhHHHHHHHHHHHHHHHHHHHHhh
Q 008525          530 TGIRDSENRVAAQQQKITALRQEVENLLELI  560 (563)
Q Consensus       530 ~~g~~~~~~~~~~~~k~~~~~~~~~~~~~~l  560 (563)
                      -+|.+ |+.   +..|.++++.++++++|+|
T Consensus       576 ~sg~~-e~~---~~~~~~~~~~~~~~i~~~~  602 (602)
T KOG2291|consen  576 GSGME-EGM---IANKTQYHQRGVDPILDYL  602 (602)
T ss_pred             ccccc-hhh---hhcchHHHHhccchhhhcC
Confidence            77777 555   5566777788888888875

>PF04597 Ribophorin_I: Ribophorin I; InterPro: IPR007676 Ribophorin I is an essential subunit of oligosaccharyltransferase (OST), which is also known as dolichyl-diphosphooligosaccharide--protein glycosyltransferase, (2	Back alignment and domain information

>PF14966 DNA_repr_REX1B: DNA repair REX1-B	Back alignment and domain information

>PF08487 VIT: Vault protein inter-alpha-trypsin domain; InterPro: IPR013694 Inter-alpha-trypsin inhibitors (ITIs) consist of one light chain and a variable set of heavy chains	Back alignment and domain information

>smart00609 VIT Vault protein Inter-alpha-Trypsin domain	Back alignment and domain information

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]	Back alignment and domain information

>PRK11637 AmiB activator; Provisional	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		563
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-10
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 61.4 bits (148), Expect = 6e-10
 Identities = 70/397 (17%), Positives = 117/397 (29%), Gaps = 111/397 (27%)

Query: 20  LFASPVLSD--LILSKV-DRRI----D------LTSQIVRITSTLKVENEGSEPVSEVLL 66
           L  S    +  L+L  V + +     +      LT++  ++T  L         +    +
Sbjct: 237 LLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSM 296

Query: 67  AFPDLQVKDLALLKASPHEGKGKVKSLSASLPVENVKPNGMPAALTFYAVKLPKALGKGD 126
                +VK L LLK         +      LP E +     P  L+  A  +   L   D
Sbjct: 297 TLTPDEVKSL-LLKY--------LDCRPQDLPREVLT--TNPRRLSIIAESIRDGLATWD 345

Query: 127 SYTFDVLAVFAHALRPFPEKITQADIQ-----LVVFQESA-----------FYLTPYVVK 170
           ++           +      +  A+ +     L VF  SA           F +    V 
Sbjct: 346 NWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVM 405

Query: 171 --VQSLSVK-LPESRIESYT------------KLEN-TKIHGSEI-KYGPYENLPSFSYS 213
             V  L    L E + +  T            KLEN   +H S +  Y   +   S    
Sbjct: 406 VVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLI 465

Query: 214 PIVVHFESNQPFAVGQEVVREIEISHWGNVQVTEHYKLVHGG-AQNKGEFSR--LDYQAR 270
           P    +     +            SH G       + L +    +    F    LD    
Sbjct: 466 PP---YLDQYFY------------SHIG-------HHLKNIEHPERMTLFRMVFLD---- 499

Query: 271 PTIRGASAFKYLIAKMPPRVHSVYYRDEIGNISTSNLWGDSKKTELLIEPRYPLFGGWRT 330
                   F++L  K+    H     +  G  S  N     K  +  I    P +     
Sbjct: 500 --------FRFLEQKI---RHDSTAWNASG--SILNTLQQLKFYKPYICDNDPKYERLVN 546

Query: 331 AFTIGYGLPLKDFLFELEGN----RFLNITFGSPMNE 363
           A        + DFL ++E N    ++ ++   + M E
Sbjct: 547 A--------ILDFLPKIEENLICSKYTDLLRIALMAE 575

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		563
1txp_A		28	HnRNP C, heterogeneous nuclear ribonucleoprotein C	82.24
3mq9_A		471	Bone marrow stromal antigen 2 fused to maltose-BI	80.5

>1txp_A HnRNP C, heterogeneous nuclear ribonucleoprotein C protein; antiparallel four helix coiled coil tetramer HNRNPC, signaling protein; NMR {Homo sapiens}	Back alignment and structure

Probab=82.24  E-value=1.2  Score=29.67  Aligned_cols=24  Identities=33%  Similarity=0.630  Sum_probs=20.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhcC
Q 008525          540 AAQQQKITALRQEVENLLELIDEI  563 (563)
Q Consensus       540 ~~~~~k~~~~~~~~~~~~~~l~~~  563 (563)
                      .++.+.+..++++||+||+.|+.|
T Consensus         2 Q~IkkELtQIK~kvDsLLe~Le~~   25 (28)
T 1txp_A            2 QAIKKELTQIKQKVDSLLENLEKI   25 (28)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhh
Confidence            567788899999999999999865

PyMOL of 1txp

>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00