Citrus Sinensis ID: 008530

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560--
Protein Sequence
MQPLFNAFANQTQSNSSTSTLPQMAFRPNMLQNSVPMQPQTGIMNPQVPFPLSNSNMPATAPLMNQNNFMNASNPLLIAQSNHLGLPQLGHMFPVHGNFGNMPLNVSQGQLLGPNLSNLPQQFNQNMGFSNGQMCLQSVNQLLSMQMSNPCLFGNPQFGLVNQNQQNFVQPIKDVSGNNTLKSCSSEPRQGQNLQPSAFMRSQRNFIQNGQGSISKSNSKKVSGKNFIKNRTKEFSQGFQKSHFHQMHNGKRKFGFYNDQKPKGHGNGKAIKFGLANQMNQPQEKKRKSLALTYTEQEVKQWCEERRKNYPTKANINKKLTEKQSNSDVIDKEAKMRREQLKEILAKQAELGVEVAEIPSYYLLDSKKQVRARVENTMPLNKRGRFQNNYDKRGRYKRKDQFSKEQKLADKDSSNTSSFNKKKPTLLQKLLSADVKRDKSHLLQTFRFMAINSFFKDWPEKPVNFPLVMVKDGGAAGEVVEEKSLLLGEEDSEGKGRRMVEHFEHDENRERMHHNIQGFEDENDDEEEDNDNGEQMKVYIAGKGNTNDEHVRLEEEEGEIID
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHccccccccccccccccccccccccccccHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccEEEccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccHHHccccccccHHHHcccccccHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccccccccHHHcccccccccccHHcccHHHHccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccHccccccccccccccccccccHcccccccccccccccccccccccccccccccccccccccccccccccccccEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccEEEcHHHHHHHHHHHHHcccccHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccHcccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEEcccccccEEcccccccccccccccccEEEEEEcccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccEcc
Coil and Loop (DISEMBL)
MQPLFNafanqtqsnsststlpqmafrpnmlqnsvpmqpqtgimnpqvpfplsnsnmpataplmnqnnfmnasnplliaqsnhlglpqlghmfpvhgnfgnmplnvsqgqllgpnlsnlpqqfnqnmgfsngqMCLQSVNQLLSmqmsnpclfgnpqfglvnqnqqnfvqpikdvsgnntlkscsseprqgqnlqpsafmRSQRNfiqngqgsisksnskkvsgkNFIKNRTKEFSQGfqkshfhqmhngkrkfgfyndqkpkghgngkAIKFGlanqmnqpqekKRKSLALTYTEQEVKQWCEERrknyptkaninkkltekqsnsdvIDKEAKMRREQLKEILAKQAELGVEVAEIPSYYLLDSKKQVRARVENtmplnkrgrfqnnydkrgrykrkdqfskeqkladkdssntssfnkkkPTLLQKLLSADVKRDKSHLLQTFRFMAINSffkdwpekpvnfplvmvkdggaageVVEEKSlllgeedsegkgRRMVEHfehdenrermhhniqgfedenddeeedndngEQMKVYIAgkgntndehvrleeeegeiid
Flexible Loop (DISEMBL)
MQPLFNAFanqtqsnsststLPQMAFRPNMLQNSVPMQPQTGIMNPQVPFPLSNSNMPATAPLMNQNNFMNASNPLLIAQSNHLGLPQLGHMFPVHGNFGNMPLNVSQGQLLGPNLSNLPQQFNQNMGFSNGQMCLQSVNQLLSMQMSNPCLFGNPQFGLVNQNQQNFVQPIKDVSGNNTLKSCSSEPRQGQNLQPSAFMRSQRNFIQngqgsisksnskkvsGKNFIKNRTKEFSQGFQKSHFHQMHNGKRKFGFYNDQKPKGHGNGKAIKFGlanqmnqpqekKRKSLALTYTEQEVKqwceerrknyptkaninkkltekqsnsdviDKEAKMRREQLKEILAKqaelgvevaeipsyylldskkqVRARventmplnkrgrfqnnydkrgrykrkdqfskeqkladkdssntssfnkkkptLLQKLLSADVKRDKSHLLQTFRFMAINSFFKDWPEKPVNFPLVMVKDGGAAGEVVeekslllgeedsegkgrRMVEHfehdenrermhhniqgfedenddeeEDNDNGEQMKVYIagkgntndehvrleeeegeiid
Low Complexity Region (SEG)
MQPLFNAFAnqtqsnsststLPQMAFRPNMLQNSVPMQPQTGIMNPQVPFPLSNSNMPATAPLMNQNNFMNASNPLLIAQSNHLGLPQLGHMFPVHGNFGNMPLNVSQGQLLGPNLSNLPQQFNQNMGFSNGQMCLQSVNQLLSMQMSNPCLFGNPQFGLVNQNQQNFVQPIKDVSGNNTLKSCSSEPRQGQNLQPSAFMRSQRNFIQNGQgsisksnskkvsgknFIKNRTKEFSQGFQKSHFHQMHNGKRKFGFYNDQKPKGHGNGKAIKFGLANQMNQPQEKKRKSLALTYTEQEVKQWCEERRKNYPTKANINKKLTEKQSNSDVIDKEAKMRREQLKEILAKQAELGVEVAEIPSYYLLDSKKQVRARVENTMPLNKRGRFQNNYDKRGRYKRKDQFSKEQKLADKDSSNTSSFNKKKPTLLQKLLSADVKRDKSHLLQTFRFMAINSFFKDWPEKPVNFPLVMVKDGGAAGEVVEEKSLLLGEEDSEGKGRRMVEHFEHDENRERMHHNIQGFedenddeeedndnGEQMKVYIAGKGNTNDEHVRLEEEEGEIID
Disordered region (IsUnstruct)
**************************************************************************PLLIAQSNHLGLPQLGHMFPVHGNFGNMPLNVSQGQLLG*************MGFSNGQMCLQSVNQLLSMQMSNPCLFGNPQFGLVNQNQQNFV************************************************************************************************************************************W*****************************************ILAKQAELGVEVAEIPSYYLLDS********************************************************************V*RDKSHLLQTFRFMAINSFFKDWPEKPVNFPLVMVKDGGAAGEV***********************************************************************************
Disordered Region (DISOPRED)
************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************ADVKRDKSHLLQTFRFMAINSFFKDWPEKPVNFPLV************************************************************************************LEE****I**
Disordered Region (DISEMBL)
********************LPQMAFRPNMLQNSVPMQPQTGIMNPQVPFPLSNSNMPATAPLMNQNNFMNASNPLLIAQSNHLGLPQLGHMFPVHGNFGNMPLNVSQGQLLGPNLSNLPQQFNQNMGFSNGQMCLQSVNQLLSMQMSNPCLFGNPQFGLVNQNQQNFVQPIKDVSGNNTL************LQPSAFMRSQRNFIQNGQGSISKSNSKKVSGKNFIKNRTKEFSQGFQKSHFHQMHNGKRKFGFYNDQKPKGHGNGKAIKFGLANQMNQPQEKKRKSLALTYTEQEVKQWCEERRKNYPTKANINKKLTEKQSNSDVIDKEAKMRREQLKEILAKQAELGVEVAEIPSYYLLDSKKQVRARVENTMPLNKRGRFQNNYDKRGRY************************KKKPTLLQKLLSADVKRDKSHLLQTFRFMAINSFFKDWPEKPVNFPLVMVKDGGAAGEVVEEKSLLLGEEDSEGKGRRMVEHFEHDENRERMHHNIQGFED***********GEQMKVYIAGKGNTNDEHVRL*********
Disordered Region (DISPRO)
***LFNAF******NSSTSTLPQMAFRPNMLQNSVPMQPQTGIMNPQVPFPLSNSNMPATAPLMNQNNFMNASNPLLIAQSNHLGLPQLGHMFPVHGNFGNMPLNVSQGQLLGPNLSNLPQQFNQNMGFSNGQMCLQSVNQLLSMQMSNPCLFGNPQFGLVNQNQQNFVQPIKDVSGNNTLKSCSSEPRQGQNLQPSAFMRSQR**********************************************************************************RKSLALTYTEQEVKQWCEERRKNYPTKANINKKLT******DVIDKEAKMRREQLKEILAKQAELGVEVAEIPSYYL**********************************************************KKPTLLQKLLSADVKRDKSHLLQTFRFMAINSFFKDWPEKPVNFPLVMVKDGGAAGEVVEEKSLLLGEE****KGRRMVEHFEH***********************DNDNGEQMKVYIAGKGNTNDEHVRLEEEE**II*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MQPLFNAFANQTQSNSSTSTLPQMAFRPNMLQNSVPMQPQTGIMNPQVPFPLSNSNMPATAPLMNQNNFMNASNPLLIAQSNHLGLPQLGHMFPVHGNFGNMPLNVSQGQLLGPNLSNLPQQFNQNMGFSNGQMCLQSVNQLLSMQMSNPCLFGNPQFGLVNQNQQNFVQPIKDVSGNNTLKSCSSEPRQGQNLQPSAFMRSQRNFIQNGQGSISKSNSKKVSGKNFIKNRTKEFSQGFQKSHFHQMHNGKRKFGFYNDQKPKGHGNGKAIKFGLANQMNQPQEKKRKSLALTYTEQEVKQWCEERRKNYPTKANINKKLTEKQSNSDVIDKEAKMRREQLKEILAKQAELGVEVAEIPSYYLLDSKKQVRARVENTMPLNKRGRFQNNYDKRGRYKRKDQFSKEQKLADKDSSNTSSFNKKKPTLLQKLLSADVKRDKSHLLQTFRFMAINSFFKDWPEKPVNFPLVMVKDGGAAGEVVEEKSLLLGEEDSEGKGRRMVEHFEHDENxxxxxxxxxxxxxxxxxxxxxxxxxxxxKVYIAGKGNTNDEHVRLEEEEGEIID
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	562
147775405	605	hypothetical protein VITISV_043067 [Viti	0.795	0.738	0.407	5e-78
449446325	599	PREDICTED: uncharacterized protein LOC10	0.843	0.791	0.396	2e-77
449494110	552	PREDICTED: uncharacterized LOC101213190	0.834	0.849	0.395	4e-77
224100559	659	predicted protein [Populus trichocarpa]	0.612	0.522	0.447	6e-76
224113339	674	predicted protein [Populus trichocarpa]	0.921	0.768	0.364	3e-74
356553962	822	PREDICTED: uncharacterized protein LOC10	0.862	0.590	0.360	2e-65
255554855	273	conserved hypothetical protein [Ricinus	0.380	0.783	0.587	4e-63
145334515	470	uncharacterized protein [Arabidopsis tha	0.679	0.812	0.420	4e-62
358347440	553	hypothetical protein MTR_101s0034 [Medic	0.750	0.763	0.373	6e-62
297807865	454	hypothetical protein ARALYDRAFT_488722 [	0.647	0.801	0.391	7e-62

>gi|147775405|emb|CAN73830.1| hypothetical protein VITISV_043067 [Vitis vinifera]

 Score =  298 bits (763), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 224/550 (40%), Positives = 282/550 (51%), Gaps = 103/550 (18%)

Query: 34  SVPMQPQTGIMNPQVPFPLSNSNMPATAPLMNQNNFMNASNPLLIAQSNHLGLPQLGHMF 93
           ++P   Q G++ PQ   P    NMP      NQ  FM    PL   Q+NHLG+P LG   
Sbjct: 40  ALPNPLQMGMLXPQTSIPFI-PNMP------NQFGFM----PL---QNNHLGMPHLGSAQ 85

Query: 94  PVHGNFG--NMPLNVSQ-----------GQLLGPNLSNLPQQFNQNMGFSNGQMCLQSVN 140
              G+F   N   N+ Q             L G N + LP          N Q CLQ+ N
Sbjct: 86  SYQGSFNPQNCVPNLGQSAXRSNPSQPPANLFGHNSAILP---------GNLQFCLQNXN 136

Query: 141 QLLSMQMSNPCLFG------------------NPQFGLVNQNQQNFVQPIKDVS------ 176
           Q   M M N    G                   PQ      NQQ     +  V       
Sbjct: 137 QNFPMPMPNLNQVGPYNIPQASHHMFQLAQALGPQSSAFIPNQQFVPMCVSGVGENVHQD 196

Query: 177 ---------GNNTLK-----------------SCSSEPRQ-GQNLQPSAFMRSQRNFIQN 209
                    G+N LK                 + S +P+Q   N QPS FM+SQ NF+++
Sbjct: 197 NHKLGPPAMGSNALKQPPIANPQLQGNWPTMATSSVQPQQTWNNQQPSNFMKSQGNFVKD 256

Query: 210 GQGSISKSNSKKVSGKNFIKN-RTKEFSQGFQKSHFHQMHNGKRKFGFYNDQKPKGHGNG 268
              + S  N K  S KNF+ N + K    G +KS  H M NG+ K G  N+ + KG  N 
Sbjct: 257 AGVNNSNPNWKNSSRKNFMXNPKGKNSHWGSRKSQLHHMQNGRGKAGISNENRGKGLSNN 316

Query: 269 KAIKFGLANQMNQPQEKKRKSLALTYTEQEVKQWCEERRKNYPTKANINKKLTEKQSNSD 328
            A      N   Q + +K++ L L YTEQE++ W EER+KNYP+K N+ KK  EK +NS+
Sbjct: 317 MAGNLCRPNFTYQDKVEKKRPLPLNYTEQEIQNWREERKKNYPSKINLEKKSAEKLTNSE 376

Query: 329 VIDKEAKMRREQLKEILAKQAELGVEVAEIPSYYLLDS-KKQVRARVENT-MPLNKRGRF 386
           VI+ E K RR+QLKEILAKQAELGVEVAEIP +YL DS K+QV  R EN      K+ RF
Sbjct: 377 VIEAEVKSRRQQLKEILAKQAELGVEVAEIPPHYLSDSEKQQVHGREENNKKAFGKKERF 436

Query: 387 QNNYDKRGRYKRK--------DQFSKEQKLADKDSSNTSS-----FNKKKPTLLQKLLSA 433
           QN  +KR R+ RK        D F+K+Q+LA  DS +T++      NKKK TLLQKLLS 
Sbjct: 437 QNRGNKRRRHDRKQWQRHDQEDGFTKKQRLAGTDSGDTNASNQPPLNKKKQTLLQKLLST 496

Query: 434 DVKRDKSHLLQTFRFMAINSFFKDWPEKPVNFPLVMVKDGGAAGEVVEEKSLLLGEEDSE 493
           D+KRDK HLLQ FRFMA+NSFFKDWPEKP+ FPLV VK+ G  GEVV+ KS    +   +
Sbjct: 497 DIKRDKRHLLQVFRFMAMNSFFKDWPEKPLKFPLVAVKETGCQGEVVDRKSSPTSKGVPQ 556

Query: 494 GKGRRMVEHF 503
           G  +   E F
Sbjct: 557 GGRKTXAEEF 566

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449446325|ref|XP_004140922.1| PREDICTED: uncharacterized protein LOC101213190 [Cucumis sativus]

 Score =  296 bits (758), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 233/587 (39%), Positives = 313/587 (53%), Gaps = 113/587 (19%)

Query: 57  MPATAPLMNQNNFM-NASNPLLIAQSNHLGLPQL--GHM--------FPVHGNFGNMPLN 105
           +P   P M Q   M N  NPL+   +N LG      GHM        FP  G F  MP N
Sbjct: 45  VPTMPPPMFQPGLMMNLQNPLMGLPNNSLGASPFAPGHMGFANSAANFPAQGQFNLMP-N 103

Query: 106 VSQ---------GQLLGPNLSNLPQQFNQNMGFSNGQMCL--QSVNQ-LLSMQMSN---- 149
           V+Q          Q  G N+ NL QQ  QNMG +NGQ CL  Q++NQ ++  QM N    
Sbjct: 104 VNQMNMNSCLPLAQFFGQNMPNLVQQLGQNMGLNNGQFCLPFQNMNQHVIPGQMMNMPQV 163

Query: 150 --------------PCLFGNPQFGL------------VNQNQQNFV-------------- 169
                         P  F NP F              VNQN QNF+              
Sbjct: 164 PSYTSYGGPNQQAVPMPFQNPGFSTAQSFGVNQGMQPVNQNPQNFIPQAMGGAGSNQFPA 223

Query: 170 --QPIKDVSGNNTLK-SCSSEPRQGQNLQPSAFMRSQRNFIQNGQGSISKSNSKKVSGKN 226
             QP++   GN+T+  + S++P+Q +NLQ  AF  +Q N   +  G+ S S S   + +N
Sbjct: 224 SAQPLQ---GNSTMPINSSTQPQQARNLQSPAFAGTQGNSSISDGGNGSNSISNNSAHRN 280

Query: 227 FIKNRTKEFSQGFQKSHFHQMHNGKRKFGFYNDQKPKGHGNGKAIKFGLANQMNQPQEKK 286
           F++N  K    GFQK+  H + N K+KFGF   QK KG  N +  KF   N  +Q +E+K
Sbjct: 281 FMRNSKK----GFQKNQTHHLKNEKKKFGFPGGQKEKGFHNERRNKFCGTNPTDQVKEQK 336

Query: 287 RKSLALTYTEQEVKQWCEERRKNYPTKANINKKLTEKQSNSDVIDKEAKMRREQLKEILA 346
           R SL+L YT+QE++QW E RRKNYP+  NI KKLT KQ+N  ++DKEAK+ R++LKEILA
Sbjct: 337 R-SLSLVYTDQEIRQWREARRKNYPSSTNIQKKLTGKQTNCTLVDKEAKLLRQELKEILA 395

Query: 347 KQAELGVEVAEIPSYYLL-----DSKKQVRARV----ENTMPLNKRGRFQNNYDKRGRYK 397
           KQAELGVEVAEIP  YL      D++KQ   R     E      ++   QN  +KRGR K
Sbjct: 396 KQAELGVEVAEIPPEYLSYSEKHDNRKQRGGRSTLGEEAEEASIEKENSQNRLNKRGRCK 455

Query: 398 RKDQFSKEQKLADKDSSNTSSFNKKKPTLLQKLLSADVKRDKSHLLQTFRFMAINSFFKD 457
           +K++  K+ K  +K  SN     K++PTLLQKLL ADV++DKS LLQ  RF  +NSFFK+
Sbjct: 456 KKNRPRKKGKF-EKHLSNKPPLKKREPTLLQKLLKADVRKDKSQLLQALRFTVMNSFFKE 514

Query: 458 WPEKPVNFPLVMVKDGGAAGEVVEEKSLLLGEED-SEGKGRRMVEH-FEHDENRERMHHN 515
           WP KP+ FP V VK+      VV+E SL  G  +  E     +VE+   HD         
Sbjct: 515 WPNKPLKFPSVTVKENEGETNVVDETSLSTGNFNLQETNNNSLVENDGSHD--------- 565

Query: 516 IQGFEDENDDEEEDNDNGEQMKVYIAGKGNTNDEHVRLEEEEGEIID 562
               + +N+++ +D++  E++K    G G      +++ EEEGEIID
Sbjct: 566 ---IDSDNENDIKDSNKDEKLK----GDG------IQVLEEEGEIID 599

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449494110|ref|XP_004159451.1| PREDICTED: uncharacterized LOC101213190 [Cucumis sativus]

 Score =  295 bits (755), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 230/581 (39%), Positives = 310/581 (53%), Gaps = 112/581 (19%)

Query: 62  PLMNQNNFMNASNPLLIAQSNHLGLPQL--GHM--------FPVHGNFGNMPLNVSQ--- 108
           P+      MN  NPL+   +N LG      GHM        FP  G F  MP NV+Q   
Sbjct: 4   PMFQPGLMMNMQNPLMGLPNNSLGASPFAPGHMGFANSAANFPAQGQFNLMP-NVNQMNM 62

Query: 109 ------GQLLGPNLSNLPQQFNQNMGFSNGQMCL--QSVNQ-LLSMQMSN---------- 149
                  Q  G N+ NL QQ  QNMG +NGQ CL  Q++NQ ++  QM N          
Sbjct: 63  NSCLPLAQFFGQNMPNLVQQLGQNMGLNNGQFCLPFQNMNQHVIPGQMMNMPQVPSYTSY 122

Query: 150 --------PCLFGNPQFGL------------VNQNQQNFV----------------QPIK 173
                   P  F NP F              VNQN QNF+                QP++
Sbjct: 123 GGPNQQAVPMPFQNPGFSTAQSFGVNQGMQPVNQNPQNFIPQAMGGAGSNQFPASAQPLQ 182

Query: 174 DVSGNNTLK-SCSSEPRQGQNLQPSAFMRSQRNFIQNGQGSISKSNSKKVSGKNFIKNRT 232
              GN+T+  + S++P+Q +NLQ  AF  +Q N   +  G+ S S S   + +NF++N  
Sbjct: 183 ---GNSTMPINSSTQPQQARNLQSPAFAGTQGNSSISDGGNGSNSISNNSAHRNFMRNSK 239

Query: 233 KEFSQGFQKSHFHQMHNGKRKFGFYNDQKPKGHGNGKAIKFGLANQMNQPQEKKRKSLAL 292
           K    GFQK+  H + N K+KFGF   QK KG  N +  KF   N  +Q +E+KR SL+L
Sbjct: 240 K----GFQKNQTHHLKNEKKKFGFPGGQKEKGFHNERRNKFCGTNPTDQVKEQKR-SLSL 294

Query: 293 TYTEQEVKQWCEERRKNYPTKANINKKLTEKQSNSDVIDKEAKMRREQLKEILAKQAELG 352
            YT+QE++QW E RRKNYP+  NI KKLT KQ+N  ++DKEAK+ R++LKEILAKQAELG
Sbjct: 295 VYTDQEIRQWREARRKNYPSSTNIQKKLTGKQTNCTLVDKEAKLLRQELKEILAKQAELG 354

Query: 353 VEVAEIPSYYLL-----DSKKQVRARV----ENTMPLNKRGRFQNNYDKRGRYKRKDQFS 403
           VEVAEIP  YL      D++KQ   R     E      ++   QN  +KRGR K+K++  
Sbjct: 355 VEVAEIPPEYLSYSEKHDNRKQRGGRSTLGEEAEEASIEKENSQNRLNKRGRCKKKNRPR 414

Query: 404 KEQKLADKDSSNTSSFNKKKPTLLQKLLSADVKRDKSHLLQTFRFMAINSFFKDWPEKPV 463
           K+ K  +K  SN     K++PTLLQKLL ADV++DKS LLQ  RF  +NSFFK+WP KP+
Sbjct: 415 KKGKF-EKHLSNKPPLKKREPTLLQKLLKADVRKDKSQLLQALRFTVMNSFFKEWPNKPL 473

Query: 464 NFPLVMVKDGGAAGEVVEEKSLLLGEED-SEGKGRRMVEH-FEHDENRERMHHNIQGFED 521
            FP V VK+      VV+E SL  G  +  E     +VE+   HD             + 
Sbjct: 474 KFPSVTVKENEGETNVVDETSLSTGNFNLQETNNNSLVENDGSHD------------IDS 521

Query: 522 ENDDEEEDNDNGEQMKVYIAGKGNTNDEHVRLEEEEGEIID 562
           +N+++ +D++  E++K    G G      +++ EEEGEIID
Sbjct: 522 DNENDIKDSNKDEKLK----GDG------IQVLEEEGEIID 552

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224100559|ref|XP_002311923.1| predicted protein [Populus trichocarpa] gi|222851743|gb|EEE89290.1| predicted protein [Populus trichocarpa]

 Score =  291 bits (745), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 184/411 (44%), Positives = 233/411 (56%), Gaps = 67/411 (16%)

Query: 185 SSEPRQGQNLQPSAFMRSQRNFIQNGQGSISKSNSKKVSGKNFIKNRTKEFSQ-GFQKSH 243
           SS  +Q  N QPS + R Q N  +NGQ S  KS  +K SGKN   NR +  SQ G QKS 
Sbjct: 283 SSASQQSWNSQPSTYNRWQGNTARNGQSSTPKSKWEKPSGKNLKNNRNRGRSQSGHQKSD 342

Query: 244 FHQMHNGKRKFGFYNDQKPKGHGNGKAIKFGLANQMNQPQEKKRK-SLALTYTEQEVKQW 302
           F+ M NGKRK  F N+   KG+GN +  KFG  +  +Q  E+K K S    YTEQE+KQW
Sbjct: 343 FNCMDNGKRKLEFSNEHGRKGNGNERVAKFGRTDLTDQATEEKSKPSRTFFYTEQEIKQW 402

Query: 303 CEERRKNYPTKANINKKLTEKQSNSDVIDKEAKMRREQLKEILAKQAELGVEVAEIPSYY 362
            E RRK+YPTK +I KK  E      VID+EA  R +QLKEILAKQAELGVEVAEIP  Y
Sbjct: 403 RESRRKHYPTKTSIEKKQME------VIDREANFRHKQLKEILAKQAELGVEVAEIPPDY 456

Query: 363 LLDS-------------------------------KKQVRARVENTMPLNKRGRFQNNYD 391
           LLDS                               +KQ   R +N   L K+G+F N +D
Sbjct: 457 LLDSEKLGVEVAEIPPPQVLSSEKLGVEVAEIPPPQKQEHGREDNRRSLTKKGKFWNKHD 516

Query: 392 KRGRYKRKDQFSKEQKLADKDSSNTSSFNKKKPTLLQKLLSADVKRDKSHLLQTFRFMAI 451
           KRGR+ +K + +K+   A+++         +KPTLL+KLLS D+KRDK  LLQ FRFM  
Sbjct: 517 KRGRFNKKGRSAKQVGSANEE---------RKPTLLEKLLSTDIKRDKRQLLQVFRFMVA 567

Query: 452 NSFFKDWPEKPVNFPLVMVKDGGAAGEVVEEKSLLLGEEDSEGKGRRMVEHFEHDENRER 511
           NSFFKDWPEKP+ FP V+VK+ G   E+VE+KS L+GEE SE +   + E+F        
Sbjct: 568 NSFFKDWPEKPLKFPSVVVKEDGYEDEIVEKKSSLVGEEVSEDRNNTIAENF-------- 619

Query: 512 MHHNIQGFEDENDDEEEDNDNGEQMKVYIAGKGNTNDEHVRLEEEEGEIID 562
                     + DD  E +   E    ++ GK +  DE  R+  EEGEI+D
Sbjct: 620 ---------GDRDDNIEHDAQVELGNCFVRGKCDIVDEVDRV--EEGEIVD 659

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224113339|ref|XP_002316461.1| predicted protein [Populus trichocarpa] gi|222865501|gb|EEF02632.1| predicted protein [Populus trichocarpa]

 Score =  285 bits (730), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 262/718 (36%), Positives = 332/718 (46%), Gaps = 200/718 (27%)

Query: 1   MQPLFNAF-ANQTQSNSSTSTLPQMAFRPN-MLQNSVPMQPQTGIMNPQVPF-------P 51
           M+P FN+      +   +T+   Q  F  N  L NS  MQPQ G++NPQ+P        P
Sbjct: 1   MEPFFNSRRPRHHKQKGNTAPYNQQGFSANPSLTNS--MQPQLGLVNPQIPIPFNNSNTP 58

Query: 52  LSNS----NMP----------------ATAPLMNQNNFMNASNPLLIAQSNHLGLPQLGH 91
           L N     NMP                A   L NQ N +NA   +L+ Q N L     G 
Sbjct: 59  LRNGQAMPNMPPLINQQHGLVSGPNDLAILQLQNQVNKLNALK-MLMNQVNQL----QGE 113

Query: 92  MFPVHGNFGNMP--LNVSQGQLLGP--NLSN-----------------LPQQFNQNMG-- 128
           +F     F N+P  +N + G L  P  N+ N                 +P + +Q +G  
Sbjct: 114 LF--GPGFSNLPQQINQNMGLLQNPMQNMMNPVMPMQMPMTSQVGSFNVPSRSHQVVGAQ 171

Query: 129 ----FSNGQMCLQSVNQLLSMQMSNPCLFGNPQFGLVNQNQQ----------NFVQPIKD 174
               F N Q+     N ++    +N    G+ Q    NQ  Q          NFV P   
Sbjct: 172 SPNFFVNQQVKQNQPNFVMPTTGAN----GSKQLSFENQQMQGNLSATQKNQNFVMPAVG 227

Query: 175 VSGNNTLKSCSSE----------------------------------------PRQGQNL 194
            +G+N+L   + +                                         +Q QNL
Sbjct: 228 TNGSNSLHVATQQVQGISPASQQSEKFVMPTMAANGPKPLPAATQQVQGNPFTSQQSQNL 287

Query: 195 QPSAFMRSQRNFIQNGQGSISKSNSKKVSGKNFIKNRTKEFSQ-GFQKSHFHQMHNGKRK 253
           QPSA+ R Q N  +NGQGS   S     SGKNF  N  +E SQ G QKS FH+M NGKRK
Sbjct: 288 QPSAYNRWQGNPAKNGQGSTPNSKQGIFSGKNFKNNPKREQSQSGHQKSEFHRMDNGKRK 347

Query: 254 FGFYNDQKPKGHGNGKAIKFGLANQMNQPQEKKRKSLALTYTEQEVKQWCEERRKNYPTK 313
            GF N    KG GN +A KFG ++  NQ  E+KR  +   YTEQE+KQW E RRK++PTK
Sbjct: 348 LGFSNKHGGKGKGNERAAKFGRSDPSNQVMEQKRTHI---YTEQEIKQWRESRRKHFPTK 404

Query: 314 ANINKKLTEKQSNSDVIDKEAKMRRE-------------QLKEILAKQAELGVEVAEIPS 360
            NI KK TEK  +S VIDKEA  RR+             QLKEILAKQAELGVEVAEIP 
Sbjct: 405 TNIEKKQTEKLIDSGVIDKEANFRRKVLNALPRKLDDKLQLKEILAKQAELGVEVAEIPP 464

Query: 361 YY------------------------------------LLDSKKQVRARVENTMPLNKRG 384
            Y                                    LLDS+KQ   R +N   L K+G
Sbjct: 465 EYMLDSEKLGVEVAETPLSYLLDSEKLGVEAAEIPPHHLLDSEKQEHGREDNRRSLTKKG 524

Query: 385 RFQNNYDKRGRYKRKDQFSKEQKLADKDSSNTSSFNKKKPTLLQKLLSADVKRDKSHLLQ 444
           RF N +D+RGRYKRK +   +  L +++         +KPTLL+KLL AD+KRDK  LLQ
Sbjct: 525 RFWNKHDRRGRYKRKGRSDMQLGLENEE---------RKPTLLEKLLCADIKRDKHRLLQ 575

Query: 445 TFRFMAINSFFKDWPEKPVNFPLVMVKDGGAAGEVVEEKSLLLGEEDSEGKGRRMVEHFE 504
            FRFM  NSFFKDW +KP+ FP V+VK+ G   E  EEK  L+GEE+SE      VE F 
Sbjct: 576 VFRFMVANSFFKDWSDKPLKFPSVVVKEDGCKDEPQEEKPSLVGEEESEVPNNTTVEDF- 634

Query: 505 HDENRERMHHNIQGFEDENDDEEEDNDNGEQMKVYIAGKGNTNDEHVRLEEEEGEIID 562
                            + DD +E +   E     + GK +  DE  R+  EEGEIID
Sbjct: 635 ----------------GDRDDGDEHDAQVEPGNGSVMGKCDIVDEVYRV--EEGEIID 674

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356553962|ref|XP_003545319.1| PREDICTED: uncharacterized protein LOC100786384 [Glycine max]

 Score =  256 bits (654), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 219/607 (36%), Positives = 301/607 (49%), Gaps = 122/607 (20%)

Query: 58  PATAPLMNQNNFMNASN----PLLIAQSNHLGLPQLGH---------------------- 91
           P   P MN   FMNA+N    PL +    H+GLP  GH                      
Sbjct: 236 PFMQPPMNAAPFMNAANHNHFPLHMP---HMGLP--GHQQGQPHVGGLGPQNSVGNANYN 290

Query: 92  --MFP-----VHGNFGNMPLNVSQGQLLGPNLSNLPQQFNQNMGFSNGQMC----LQSVN 140
             MFP     V  N     L+  QGQ L  ++ N+ QQ N NM   NGQ C    +Q++N
Sbjct: 291 NPMFPPVQGQVMQNQAQFNLSPLQGQFLAQSILNMLQQPNMNMSMPNGQFCGPYLMQNMN 350

Query: 141 QLLSMQMSNP------------C-LFG------------------NPQFGLVNQNQQNFV 169
             L MQM NP            C +FG                  NPQ G V  NQ   V
Sbjct: 351 PQLPMQMPNPSQGVPYGMHPGSCPMFGFPNQVPQAMVPQNSMFSTNPQLGFVPGNQ---V 407

Query: 170 QPIKD----------VSGN---------------NTLKSCSSEPRQGQNLQPSAFMR--- 201
           +P  D          VS N               NT  S +       N QP AFM+   
Sbjct: 408 RPQIDPNEKNLNPPNVSANSFVSSSPFSSQQLQGNTSGSLNPNLAHTNNSQPPAFMKQVL 467

Query: 202 -SQRNFIQNGQGSISKSNSKKVSGKNFIKNRTKE--FSQGFQKSHFHQMHNGKRKFGFYN 258
            ++     N + ++  SN K    KNF KN+     F  GFQKS FH ++NGK+  GF  
Sbjct: 468 KTEEKPNSNIKTNVPNSNWKGSPSKNF-KNKPNRGGFQAGFQKSKFHDVNNGKKGSGFPI 526

Query: 259 DQKPKGHGNGKAIKFGLANQMNQPQEKKR---KSLALTYTEQEVKQWCEERRKNYPTKAN 315
           +   KG  +G+   +GL     +P+E K+   +SL++TYT QE++QW E R+KN+P   N
Sbjct: 527 EHNGKGPNSGRGGHYGL-----KPKEHKQQPERSLSVTYTVQEIQQWREARKKNHPFNNN 581

Query: 316 INKKLTEKQSNSDVIDKEAKMRREQLKEILAKQAELGVEVAEIPSYYLLDSKKQVRARVE 375
           I KK +E   +   I++E   R  +LKE+LAKQAELGVEVAEIPSYYL +S  Q   + E
Sbjct: 582 IQKKHSEHPKDRKAINREVLQR--ELKEVLAKQAELGVEVAEIPSYYLKNSDNQA-LQSE 638

Query: 376 NTMPLNKRGRFQNNYDKRGRYKRKDQFSKEQKLADKDSSNTSSFNKKKPTLLQKLLSADV 435
                  + +FQN ++K+    RK +F+K QK  DKD S + S  K+KPTLLQKLLS+DV
Sbjct: 639 GKNKFTDKRKFQNKFNKKS--DRKGRFAKRQKFDDKDFSESPSLKKRKPTLLQKLLSSDV 696

Query: 436 KRDKSHLLQTFRFMAINSFFKDWPEKPVNFPLVMVKDGGAAGEVVEEKSLLLGEEDSEGK 495
           KRDKSHL+Q FRFM +NSFFK   +KP+ +PLV+VK+ G+  +  EEK L  G++  +G 
Sbjct: 697 KRDKSHLIQVFRFMVMNSFFKHCLDKPLRYPLVVVKEKGSEVD-GEEKYLHTGKDVLKGG 755

Query: 496 GRRMVEHFEHDENRERMHHNIQGFEDENDDEEEDNDNGEQMKVYIAGKGNTNDEHVRLEE 555
               V+      N        +  +D+ +D   DN+  +     +  + ++ +   + +E
Sbjct: 756 NEETVQKIVTFNNDNSHDCEDEDSDDDENDSIVDNNLHKDPSSLVKRQCDSGEGIGKFDE 815

Query: 556 EEGEIID 562
           EEGEII+
Sbjct: 816 EEGEIIE 822

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255554855|ref|XP_002518465.1| conserved hypothetical protein [Ricinus communis] gi|223542310|gb|EEF43852.1| conserved hypothetical protein [Ricinus communis]

 Score =  249 bits (635), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 128/218 (58%), Positives = 166/218 (76%), Gaps = 4/218 (1%)

Query: 288 KSLALTYTEQEVKQWCEERRKNYPTKANINKKLTEKQSNSDVIDKEAKMRREQLKEILAK 347
           +S AL YTEQE+K W EERRKN+P+KANI K  +E+ +NS  IDKEAK+RRE+LKEILAK
Sbjct: 9   RSPALIYTEQEIKLWREERRKNFPSKANIEKMCSERVTNSGGIDKEAKLRRERLKEILAK 68

Query: 348 QAELGVEVAEIPSYYLLDSKKQVRARVENTMPLNKRGRFQNNYDKRGRYKRKDQFSKEQK 407
           QAELGVEVAEIPS+YL DS+KQV+ + ++     K+GR ++ +D+RGRY +KD  +++  
Sbjct: 69  QAELGVEVAEIPSHYLSDSEKQVKVKKDSRRSAPKKGRSRHKHDRRGRYNKKDGLTQQNT 128

Query: 408 LADKDSSNTSSFNKKKPTLLQKLLSADVKRDKSHLLQTFRFMAINSFFKDWPEKPVNFPL 467
           LA KDSSN SSF++ KPTLLQKLLSA+V++DK HLLQ FRFM +NSFF D PEKP+ FP 
Sbjct: 129 LAKKDSSNGSSFSRTKPTLLQKLLSAEVRKDKHHLLQVFRFMVMNSFFDDGPEKPLKFPS 188

Query: 468 VMVKDGGAAGEVVEEKSLLLGEEDSEGKGRRMVEHFEH 505
           V+VK+     EVV EK+ + G+  SE   +  VE+  H
Sbjct: 189 VVVKE----DEVVAEKTSITGKGISEVSNKTAVENSGH 222

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145334515|ref|NP_001078603.1| uncharacterized protein [Arabidopsis thaliana] gi|145358174|ref|NP_197345.2| uncharacterized protein [Arabidopsis thaliana] gi|60547897|gb|AAX23912.1| hypothetical protein At5g18440 [Arabidopsis thaliana] gi|71905555|gb|AAZ52755.1| hypothetical protein At5g18440 [Arabidopsis thaliana] gi|71905557|gb|AAZ52756.1| hypothetical protein At5g18440 [Arabidopsis thaliana] gi|332005180|gb|AED92563.1| uncharacterized protein [Arabidopsis thaliana] gi|332005181|gb|AED92564.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  245 bits (626), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 185/440 (42%), Positives = 246/440 (55%), Gaps = 58/440 (13%)

Query: 68  NFMNASNPLLIAQSNHLGLPQLGHMFPVHGNFGNMPLNVSQGQLLGPNLSNLPQQFNQNM 127
           N MNA N L +     +  P +GH         NMP+         PN+   PQ FN NM
Sbjct: 43  NPMNA-NQLGMMNPQMMNNPMMGH---------NMPM---------PNMPIHPQFFN-NM 82

Query: 128 GFSNGQMCLQS-VNQLLSMQMSNPCLFGNPQFGLVNQNQQ-----NFVQPIKD---VSGN 178
                Q  + + +NQLL      P L GN QF + N N       NF QP  +    S  
Sbjct: 83  PQQLPQFAMPNHINQLL------PNLLGNLQFAVANSNLMGHSLPNFFQPSLEPHAFSSR 136

Query: 179 NTLKSCSS-------EPRQGQNLQPSAFM--RSQRNFIQNGQGSISKSNSKKVSGKNFIK 229
             L S +S        P Q     P  F   R Q   + N  GS    N  +     F K
Sbjct: 137 PQLNSFNSLPYPPVPNPHQNHQSGPPGFSEPRPQGQSVDNTNGSGPNGNDFR---NKFPK 193

Query: 230 NRT-KEFSQGFQKSHFHQMHNGKRKFGFYNDQKPKGHGNGKAIKFGL--ANQMNQPQEKK 286
           ++  K   QGFQ+   HQ  NGKRK GF  D +  G GN   +K GL  ++  N  +EKK
Sbjct: 194 HQNFKGPGQGFQRPQLHQADNGKRKSGFNKDHR--GKGNNNKMKTGLDGSDTGNIAKEKK 251

Query: 287 RKSLALTYTEQEVKQWCEERRKNYPTKANINKKLTEKQSNSDVIDKEAKMRREQLKEILA 346
           R S AL YT +EV+QW E RRKNYPTK  + KK+ +K  ++ ++D+EAKMRR+QL+E+LA
Sbjct: 252 R-SYALMYTPREVQQWREARRKNYPTKFLVEKKV-KKNVSASILDEEAKMRRQQLREVLA 309

Query: 347 KQAELGVEVAEIPSYYLLDSKKQVRARVENTMPLNKRGRFQNNYDKRGRYKRKDQF-SKE 405
           KQAELGVEVAE+PS+YL ++ +QV     N     ++GRFQNN   + R+ RKD+F +K+
Sbjct: 310 KQAELGVEVAEVPSHYLSNNDEQVNGDRGNNN--GRKGRFQNNRRNKRRHDRKDKFDNKK 367

Query: 406 QKLADKDSSNTSSFNKKKPTLLQKLLSADVKRDKSHLLQTFRFMAINSFFKDWPEKPVNF 465
            +L DK SS  SS   +KPTLL+KLLSAD+KRDKS LLQ FRFM +NS  K++PE+P+  
Sbjct: 368 PRLEDKKSSQDSSITTRKPTLLEKLLSADIKRDKSQLLQVFRFMVMNSLLKEFPEQPLKL 427

Query: 466 PLVMVKDGGAAGEVVEEKSL 485
           PL+ VK+ G   + +E+ S+
Sbjct: 428 PLITVKETGCE-DAMEDPSI 446

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358347440|ref|XP_003637765.1| hypothetical protein MTR_101s0034 [Medicago truncatula] gi|355503700|gb|AES84903.1| hypothetical protein MTR_101s0034 [Medicago truncatula]

 Score =  244 bits (624), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 203/543 (37%), Positives = 273/543 (50%), Gaps = 121/543 (22%)

Query: 92  MFPVHGNFGNMPLNVSQGQLLGPNLSNLPQQFNQNM---GFSNGQMC------LQSV--N 140
           MFPVHG  G  P      Q+L  N+ NL QQ N NM      N Q C      +Q++   
Sbjct: 60  MFPVHGQGG--PQITHNAQILAQNILNLLQQPNMNMPNMNVPNAQFCAPGPYPMQNMMNQ 117

Query: 141 QLLSMQMS--------------------------------NPCLFGNPQFGLVNQNQQNF 168
           QL  MQM                                 NP   GNPQFG+V  NQ   
Sbjct: 118 QLPPMQMQRQNPTQQPYGMQPVQQPMFGFPNQVPHAMVPQNPMFNGNPQFGMVPGNQ--- 174

Query: 169 VQPIKDVSGNNTLKSCSSE----------------------PRQGQNLQPSAFMRS--QR 204
           ++P  D++  N + + +                        P    N Q SAF  S  Q 
Sbjct: 175 IRPQIDLNEKNRVPAGNGNANGFVPGGPFPPQQLQGNNGPVPHNANNAQGSAFRNSHPQV 234

Query: 205 NFIQNGQGSISKSNSKKVSGKNFIKNRTKEFSQG-FQKSHFHQMHNGKRKFGFYNDQKPK 263
           N   N   + + SN K    KNF   + +  SQG FQKS F+  + GKR   F  + K K
Sbjct: 235 NPNSNMNTNFANSNWKGSPNKNFKNKQNRGGSQGGFQKSKFNDTNKGKR---FSKEHKGK 291

Query: 264 GHGNGKAIKFGLANQMNQPQEKKRKSLALTYTEQEVKQWCEERRKNYPTKANINKKLTEK 323
           G  N +A  FGL    N  QE KR S +LTY+EQE++QW E RRKN+P++  I K+ +E+
Sbjct: 292 GPNNERAGHFGL----NSKQEPKR-SFSLTYSEQEIQQWREARRKNHPSREKIEKQQSEQ 346

Query: 324 QSNSDVIDKEAKMRREQLKEILAKQAELGVEVAEIPSYYLLDSKKQVRARVENTMPLNKR 383
             +S VID+E   R  +LKE+LAKQAELG+EVAEIPSYYL++   Q     +       +
Sbjct: 347 SKDSKVIDRELLQR--ELKEVLAKQAELGIEVAEIPSYYLMNGTNQGLQSEDKKNSFTDK 404

Query: 384 GRFQN----NYDKRGRYKRKDQFSKEQKLADKDSSNTSSFNKKKPTLLQKLLSADVKRDK 439
            +F+N    N D+R R  +K      QK AD+D       NKKKPTLLQKLLSAD+KRDK
Sbjct: 405 RKFKNKLMRNPDRRSRNNKK------QKFADRDLLE----NKKKPTLLQKLLSADIKRDK 454

Query: 440 SHLLQTFRFMAINSFFKDWPEKPVNFPLVMVKDGGAAGEVVEEKSLLLGEEDSEGKGRRM 499
           SHL Q FRF+  NSFFKD+P+KP+ +P V VK+ G+  EV   K  L G       G  +
Sbjct: 455 SHLFQVFRFITANSFFKDYPDKPLVYPPVSVKEMGS--EVYGGKKHLQG-------GEAV 505

Query: 500 VEHFEHDENRERMHHNIQGFEDENDDEEEDNDNGEQMKVYIAGKGNTNDEHVRLEEEEGE 559
           +EH      +E +   ++G ++ +D+E+E++D           +G+  D     +EEEGE
Sbjct: 506 LEH----GTKEIVQKFVKGSDNGHDNEDEESD-----------EGDNEDGINEFDEEEGE 550

Query: 560 IID 562
           II+
Sbjct: 551 IIE 553

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297807865|ref|XP_002871816.1| hypothetical protein ARALYDRAFT_488722 [Arabidopsis lyrata subsp. lyrata] gi|297317653|gb|EFH48075.1| hypothetical protein ARALYDRAFT_488722 [Arabidopsis lyrata subsp. lyrata]

 Score =  244 bits (624), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 163/416 (39%), Positives = 233/416 (56%), Gaps = 52/416 (12%)

Query: 73  SNPLLIAQSNHLGLPQLGHMFPVHGNF-GNMPLNVSQGQLLGPNLSNLPQQFNQNMGFSN 131
           SNP++   +N + +P +    P+H  F  NMP      Q   PN                
Sbjct: 59  SNPMMGHMNNPIPMPNM----PIHPQFFNNMPQQQQLHQFAMPN---------------- 98

Query: 132 GQMCLQSVNQLLSMQMSNPCLFGNPQFGLVNQNQQ-----NFVQPIKDVSGN------NT 180
                  +NQLL      P L GN QF + N N       NF QP  + S        N+
Sbjct: 99  ------HINQLL------PNLLGNLQFAVANSNLMGHSLPNFFQPNLEPSAFTSRPQLNS 146

Query: 181 LKSCSSEPRQGQNLQPSAFMRSQRNFIQNGQGSISKSNSKKVSGKNFIKNRT-KEFSQGF 239
             S    P    +L+P  F   +     + + + S SN      K F K++  K   QGF
Sbjct: 147 FNSLPYPPVPNHHLRPPGFSEPRPQVGIDDRTNGSGSNGNDFRNK-FTKHQNFKGPGQGF 205

Query: 240 QKSHFHQMHNGKRKFGFYNDQKPKGHGNGKAIKFGL-ANQMNQPQEKKRKSLALTYTEQE 298
           Q+   HQ  NGKRK GF  D +  G GN   +K GL  +  +   ++KR+S AL YT ++
Sbjct: 206 QRPQLHQADNGKRKSGFNKDHR--GKGNYNKMKNGLDGSDADNIAKEKRRSYALMYTPKD 263

Query: 299 VKQWCEERRKNYPTKANINKKLTEKQSNSDVIDKEAKMRREQLKEILAKQAELGVEVAEI 358
           V QW E RRKN+PT+ N+ KK+ +K  ++ ++D+EAKMRR+QL+E+LAKQAELG+EVA++
Sbjct: 264 VNQWREARRKNFPTRLNVEKKV-KKNVSASILDEEAKMRRQQLREVLAKQAELGIEVADV 322

Query: 359 PSYYLLDSKKQVRARVENTMPLNKRGRFQNNYDKRGRYKRKDQFSKEQKLADKDSSNTSS 418
           PS+YL ++ ++V    +N     ++ +FQNN  K+ R+ RKD+F K  +L DK+SS  S 
Sbjct: 323 PSHYLSNTDERVHG--DNGANDGQKRKFQNNRHKQRRHGRKDKFDKTPRLDDKNSSQESP 380

Query: 419 FNKKKPTLLQKLLSADVKRDKSHLLQTFRFMAINSFFKDWPEKPVNFPLVMVKDGG 474
              KKPTLL+KLLSA++KRDK HLLQ FRFM +NSF K++PE+P+  PL+ V++ G
Sbjct: 381 MTTKKPTLLEKLLSANIKRDKIHLLQVFRFMVMNSFLKEFPEQPLKLPLITVEETG 436

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	562
TAIR|locus:2146238	470	NUFIP "AT5G18440" [Arabidopsis	0.741	0.887	0.402	3.1e-67
ZFIN|ZDB-GENE-030131-6203	406	zgc:171476 "zgc:171476" [Danio	0.065	0.091	0.475	1.8e-05
RGD|1359440	486	Nufip1 "nuclear fragile X ment	0.154	0.179	0.350	2.1e-05
UNIPROTKB|Q9UHK0	495	NUFIP1 "Nuclear fragile X ment	0.101	0.115	0.446	2.4e-05
UNIPROTKB|J9P0P5	487	NUFIP1 "Uncharacterized protei	0.101	0.117	0.446	7.5e-05
UNIPROTKB|F1PK39	488	NUFIP1 "Uncharacterized protei	0.101	0.116	0.446	7.5e-05
UNIPROTKB|F1RJZ3	494	NUFIP1 "Uncharacterized protei	0.101	0.115	0.446	7.7e-05
UNIPROTKB|E1C0G7	360	NUFIP1 "Uncharacterized protei	0.060	0.094	0.459	0.00013
UNIPROTKB|E1C0G8	434	NUFIP1 "Uncharacterized protei	0.060	0.078	0.459	0.00021
UNIPROTKB|F1NXC7	464	NUFIP1 "Uncharacterized protei	0.060	0.073	0.459	0.00025

TAIR|locus:2146238 NUFIP "AT5G18440" [Arabidopsis thaliana (taxid:3702)]

 Score = 683 (245.5 bits), Expect = 3.1e-67, P = 3.1e-67
 Identities = 186/462 (40%), Positives = 251/462 (54%)

Query:    51 PLSNSNMPATAPLMNQNNFMNASNPLLIAQSNHLGLPQLGHMFPVHGN-FGNMPLNVSQG 109
             P  NS  P   P   Q+         +   SNH      G+  P++ N  G M   +   
Sbjct:     3 PPYNSFQPQARPYRPQHQLQQQQQ--INGFSNHQQQQHNGYQNPMNANQLGMMNPQMMNN 60

Query:   110 QLLGPNLS--NLP--QQFNQNMGFSNGQMCLQS-VNQLLSMQMSNPCLFGNPQFGLVNQN 164
              ++G N+   N+P   QF  NM     Q  + + +NQLL      P L GN QF + N N
Sbjct:    61 PMMGHNMPMPNMPIHPQFFNNMPQQLPQFAMPNHINQLL------PNLLGNLQFAVANSN 114

Query:   165 QQ-----NFVQPIKD---VSGNNTLKSCSS-----EPRQGQNLQ--PSAFM--RSQRNFI 207
                    NF QP  +    S    L S +S      P   QN Q  P  F   R Q   +
Sbjct:   115 LMGHSLPNFFQPSLEPHAFSSRPQLNSFNSLPYPPVPNPHQNHQSGPPGFSEPRPQGQSV 174

Query:   208 QNGQXXXXXXXXXXXXXXXFIKNRT-KEFSQGFQKSHFHQMHNGKRKFGFYNDQKPKGHG 266
              N                 F K++  K   QGFQ+   HQ  NGKRK GF  D +  G G
Sbjct:   175 DN---TNGSGPNGNDFRNKFPKHQNFKGPGQGFQRPQLHQADNGKRKSGFNKDHR--GKG 229

Query:   267 NGKAIKFGL--ANQMNQPQEKKRKSLALTYTEQEVKQWCEERRKNYPTKANINKKLTEKQ 324
             N   +K GL  ++  N  +EKKR S AL YT +EV+QW E RRKNYPTK  + KK+ +K 
Sbjct:   230 NNNKMKTGLDGSDTGNIAKEKKR-SYALMYTPREVQQWREARRKNYPTKFLVEKKV-KKN 287

Query:   325 SNSDVIDKEAKMRREQLKEILAKQAELGVEVAEIPSYYLLDSKKQVRARVENTMPLNKRG 384
              ++ ++D+EAKMRR+QL+E+LAKQAELGVEVAE+PS+YL ++ +QV     N     ++G
Sbjct:   288 VSASILDEEAKMRRQQLREVLAKQAELGVEVAEVPSHYLSNNDEQVNGDRGNNN--GRKG 345

Query:   385 RFQNNYDKRGRYKRKDQF-SKEQKLADKDSSNTSSFNKKKPTLLQKLLSADVKRDKSHLL 443
             RFQNN   + R+ RKD+F +K+ +L DK SS  SS   +KPTLL+KLLSAD+KRDKS LL
Sbjct:   346 RFQNNRRNKRRHDRKDKFDNKKPRLEDKKSSQDSSITTRKPTLLEKLLSADIKRDKSQLL 405

Query:   444 QTFRFMAINSFFKDWPEKPVNFPLVMVKDGGAAGEVVEEKSL 485
             Q FRFM +NS  K++PE+P+  PL+ VK+ G   + +E+ S+
Sbjct:   406 QVFRFMVMNSLLKEFPEQPLKLPLITVKETGCE-DAMEDPSI 446

GO:0003674 "molecular_function" evidence=ND

GO:0000491 "small nucleolar ribonucleoprotein complex assembly" evidence=IMP

GO:0005634 "nucleus" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

ZFIN|ZDB-GENE-030131-6203 zgc:171476 "zgc:171476" [Danio rerio (taxid:7955)]

 Score = 100 (40.3 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
 Identities = 19/40 (47%), Positives = 29/40 (72%)

Query:   295 TEQEVKQWCEERRKNYPTKANINKK--LTE-KQSNSDVID 331
             TE+++++W EERR+NYPT  N+ KK  L E K+   DV++
Sbjct:   143 TEEDIRRWREERRRNYPTLRNVEKKQKLMEVKEQRGDVLE 182

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

RGD|1359440 Nufip1 "nuclear fragile X mental retardation protein interacting protein 1" [Rattus norvegicus (taxid:10116)]

 Score = 106 (42.4 bits), Expect = 2.1e-05, Sum P(2) = 2.1e-05
 Identities = 34/97 (35%), Positives = 49/97 (50%)

Query:   237 QGFQKSHFHQMHNGKRKFGFYNDQKPKGHGNGKAIKFGLANQMNQPQEKKRKSLALTYTE 296
             +GF+    + +H  + K     D     H   K ++F   N M+ P  KK K      T 
Sbjct:   174 RGFKNQEKYDIHMSEHKKCPEVDCSFSAHE--KIVQFHWRN-MHAPGMKKIK----LDTP 226

Query:   297 QEVKQWCEERRKNYPTKANIN-KKLT--EKQSNSDVI 330
             +++ +W EERRKNYPT ANI  KKL   EK+   +V+
Sbjct:   227 EDIARWREERRKNYPTLANIERKKLLQLEKEKRGEVL 263

GO:0000492 "box C/D snoRNP assembly" evidence=IEA;ISO

GO:0003723 "RNA binding" evidence=ISO

GO:0005634 "nucleus" evidence=ISO

GO:0005726 "perichromatin fibrils" evidence=IEA;ISO

GO:0005730 "nucleolus" evidence=IEA;ISO

GO:0008023 "transcription elongation factor complex" evidence=IEA;ISO

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016363 "nuclear matrix" evidence=IEA;ISO

GO:0022626 "cytosolic ribosome" evidence=IEA;ISO

GO:0030515 "snoRNA binding" evidence=IEA;ISO

GO:0030674 "protein binding, bridging" evidence=IEA;ISO

GO:0042802 "identical protein binding" evidence=IEA;ISO

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA;ISO

GO:0048786 "presynaptic active zone" evidence=IEA;ISO

GO:0070761 "pre-snoRNP complex" evidence=IEA;ISO

UNIPROTKB|Q9UHK0 NUFIP1 "Nuclear fragile X mental retardation-interacting protein 1" [Homo sapiens (taxid:9606)]

 Score = 100 (40.3 bits), Expect = 2.4e-05, Sum P(2) = 2.4e-05
 Identities = 29/65 (44%), Positives = 37/65 (56%)

Query:   269 KAIKFGLANQMNQPQEKKRKSLALTYTEQEVKQWCEERRKNYPTKANIN--KKLT-EKQS 325
             K ++F   N M+ P  KK K      T +E+ +W EERRKNYPT ANI   KKL  EK+ 
Sbjct:   211 KIVQFHWRN-MHAPGMKKIK----LDTPEEIARWREERRKNYPTLANIERKKKLKLEKEK 265

Query:   326 NSDVI 330
                V+
Sbjct:   266 RGAVL 270

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0003677 "DNA binding" evidence=NAS

GO:0006396 "RNA processing" evidence=TAS

GO:0048786 "presynaptic active zone" evidence=IDA

GO:0003723 "RNA binding" evidence=IDA

GO:0005726 "perichromatin fibrils" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0016363 "nuclear matrix" evidence=IDA

GO:0008023 "transcription elongation factor complex" evidence=IDA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IMP

GO:0000492 "box C/D snoRNP assembly" evidence=IMP

GO:0042802 "identical protein binding" evidence=IPI

GO:0030674 "protein binding, bridging" evidence=IPI

GO:0030515 "snoRNA binding" evidence=IDA

GO:0070761 "pre-snoRNP complex" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

UNIPROTKB|J9P0P5 NUFIP1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 100 (40.3 bits), Expect = 7.5e-05, Sum P(2) = 7.5e-05
 Identities = 29/65 (44%), Positives = 37/65 (56%)

Query:   269 KAIKFGLANQMNQPQEKKRKSLALTYTEQEVKQWCEERRKNYPTKANIN--KKLT-EKQS 325
             K ++F   N M+ P  KK K      T +E+ +W EERRKNYPT ANI   KKL  EK+ 
Sbjct:   208 KIVQFHWRN-MHAPGMKKIK----LDTPEEIARWREERRKNYPTLANIERKKKLKLEKEK 262

Query:   326 NSDVI 330
                V+
Sbjct:   263 RGAVL 267

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

UNIPROTKB|F1PK39 NUFIP1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 100 (40.3 bits), Expect = 7.5e-05, Sum P(2) = 7.5e-05
 Identities = 29/65 (44%), Positives = 37/65 (56%)

Query:   269 KAIKFGLANQMNQPQEKKRKSLALTYTEQEVKQWCEERRKNYPTKANIN--KKLT-EKQS 325
             K ++F   N M+ P  KK K      T +E+ +W EERRKNYPT ANI   KKL  EK+ 
Sbjct:   209 KIVQFHWRN-MHAPGMKKIK----LDTPEEIARWREERRKNYPTLANIERKKKLKLEKEK 263

Query:   326 NSDVI 330
                V+
Sbjct:   264 RGAVL 268

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

UNIPROTKB|F1RJZ3 NUFIP1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 101 (40.6 bits), Expect = 7.7e-05, Sum P(2) = 7.7e-05
 Identities = 29/65 (44%), Positives = 38/65 (58%)

Query:   269 KAIKFGLANQMNQPQEKKRKSLALTYTEQEVKQWCEERRKNYPTKANIN--KKLT-EKQS 325
             K ++F   N M+ P  KK K      T +E+ +W EERRKNYPT ANI   KKL  EK+ 
Sbjct:   210 KIVQFHWRN-MHAPGVKKIK----LDTPEEIARWREERRKNYPTLANIERKKKLKLEKEK 264

Query:   326 NSDVI 330
             +  V+
Sbjct:   265 SGAVL 269

GO:0070761 "pre-snoRNP complex" evidence=IEA

GO:0048786 "presynaptic active zone" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0042802 "identical protein binding" evidence=IEA

GO:0030674 "protein binding, bridging" evidence=IEA

GO:0030515 "snoRNA binding" evidence=IEA

GO:0022626 "cytosolic ribosome" evidence=IEA

GO:0016363 "nuclear matrix" evidence=IEA

GO:0008023 "transcription elongation factor complex" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005726 "perichromatin fibrils" evidence=IEA

GO:0000492 "box C/D snoRNP assembly" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|E1C0G7 NUFIP1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 88 (36.0 bits), Expect = 0.00013, Sum P(2) = 0.00013
 Identities = 17/37 (45%), Positives = 25/37 (67%)

Query:   297 QEVKQWCEERRKNYPTKANINKKLT---EKQSNSDVI 330
             +E+ +W EER+KN+PT ANI KK     EK+   +V+
Sbjct:    82 EEIARWREERKKNFPTLANIEKKKVMQMEKEERGEVL 118

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|E1C0G8 NUFIP1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 88 (36.0 bits), Expect = 0.00021, Sum P(2) = 0.00021
 Identities = 17/37 (45%), Positives = 25/37 (67%)

Query:   297 QEVKQWCEERRKNYPTKANINKKLT---EKQSNSDVI 330
             +E+ +W EER+KN+PT ANI KK     EK+   +V+
Sbjct:    82 EEIARWREERKKNFPTLANIEKKKVMQMEKEERGEVL 118

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|F1NXC7 NUFIP1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 88 (36.0 bits), Expect = 0.00025, Sum P(2) = 0.00025
 Identities = 17/37 (45%), Positives = 25/37 (67%)

Query:   297 QEVKQWCEERRKNYPTKANINKKLT---EKQSNSDVI 330
             +E+ +W EER+KN+PT ANI KK     EK+   +V+
Sbjct:   101 EEIARWREERKKNFPTLANIEKKKVMQMEKEERGEVL 137

GO:0008270 "zinc ion binding" evidence=IEA

GO:0000492 "box C/D snoRNP assembly" evidence=IEA

GO:0005726 "perichromatin fibrils" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0008023 "transcription elongation factor complex" evidence=IEA

GO:0016363 "nuclear matrix" evidence=IEA

GO:0022626 "cytosolic ribosome" evidence=IEA

GO:0030515 "snoRNA binding" evidence=IEA

GO:0030674 "protein binding, bridging" evidence=IEA

GO:0042802 "identical protein binding" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0048786 "presynaptic active zone" evidence=IEA

GO:0070761 "pre-snoRNP complex" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	562
pfam10453	57	pfam10453, NUFIP1, Nuclear fragile X mental retard	3e-07

>gnl|CDD|220763 pfam10453, NUFIP1, Nuclear fragile X mental retardation-interacting protein 1 (NUFIP1)

 Score = 47.0 bits (112), Expect = 3e-07
 Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 2/52 (3%)

Query: 275 LANQMNQPQEKKRKSLALTYTEQEVKQWCEERRKNYPTKANINKKLTEKQSN 326
             +  N        S+ L  T +E+ +W EER+KNYPTKANI KK   ++  
Sbjct: 2   EQDHGNDVHIPGT-SIKLQ-TPEEIAKWIEERKKNYPTKANIEKKKKAEEER 51

Proteins in this family have been implicated in the assembly of the large subunit of the ribosome and in telomere maintenance. Some proteins in this family contain a CCCH zinc finger. This family contains a protein called human fragile X mental retardation-interacting protein 1, which is known to bind RNA and is phosphorylated upon DNA damage. Length = 57

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	562
PF10453	56	NUFIP1: Nuclear fragile X mental retardation-inter	99.11
PF00642	27	zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and si	87.09

>PF10453 NUFIP1: Nuclear fragile X mental retardation-interacting protein 1 (NUFIP1); InterPro: IPR019496 Nuclear fragile X mental retardation-interacting protein 1 (Nufip1) has been implicated in the assembly of the large subunit of the ribosome [] and in telomere maintenance []

Probab=99.11  E-value=8.4e-11  Score=94.10  Aligned_cols=31  Identities=61%  Similarity=0.901  Sum_probs=28.2

Q ss_pred             cccCHHHHHHHHHHHHhcCCChHHHHHHHHH
Q 008530          292 LTYTEQEVKQWCEERRKNYPTKANINKKLTE  322 (562)
Q Consensus       292 l~~t~eeI~~WreERrKN~PT~anIe~K~~e  322 (562)
                      .++|++||++|||||||||||+++|++|+++
T Consensus        16 ~L~t~eeI~~W~eERrk~~PT~~~i~~k~~~   46 (56)
T PF10453_consen   16 KLQTPEEIAKWIEERRKNYPTKANIEKKKAE   46 (56)
T ss_pred             ecCCHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence            3479999999999999999999999988765

It is known to bind RNA [] and is phosphorylated upon DNA damage []. This entry represents a conserved domain found within Nufip1. Some proteins containing this region also contain a CCCH zinc finger.

>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=87.09  E-value=0.2  Score=34.61  Aligned_cols=26  Identities=19%  Similarity=0.188  Sum_probs=19.3

Q ss_pred             CCCCcceeccCCCCcccCCCCccchhh
Q 008530          380 LNKRGRFQNNYDKRGRYKRKDQFSKEQ  406 (562)
Q Consensus       380 ~~K~CKF~nrGg~RgRcgRKcRFsh~~  406 (562)
                      .++.|+||.+.| .|++|.+|+|+|.+
T Consensus         2 k~~~C~~f~~~g-~C~~G~~C~f~H~~   27 (27)
T PF00642_consen    2 KTKLCRFFMRTG-TCPFGDKCRFAHGE   27 (27)
T ss_dssp             TSSB-HHHHHTS---TTGGGSSSBSSG
T ss_pred             ccccChhhccCC-ccCCCCCcCccCCC
Confidence            467899999977 67899999999963

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	562
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-13
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	6e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 70.7 bits (172), Expect = 7e-13
 Identities = 76/551 (13%), Positives = 152/551 (27%), Gaps = 184/551 (33%)

Query: 96  HGNFGNMPLNVSQGQLLGPN-LSNLPQQFNQNMGFSNGQMCLQSVNQLLSMQMSNPCLFG 154
           H +  +M     + Q    + LS     F  N    + Q   +S+  L   ++ +  +  
Sbjct: 1   HHHHHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSI--LSKEEIDH--IIM 56

Query: 155 NPQ--------FGLVNQNQQNFVQP-IKDVSGNNT--LKSCSSEPRQGQNLQPSAFMR-- 201
           +          F  +   Q+  VQ  +++V   N   L      P + +  QPS   R  
Sbjct: 57  SKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLM----SPIKTEQRQPSMMTRMY 112

Query: 202 -SQRNFIQNGQGSISKSNSKKVSGKNFIKNRTKEFSQGFQKSHFHQMHNGKRKFGF---- 256
             QR+ + N     +K N  ++     ++    E     +      +       G     
Sbjct: 113 IEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPA-KNVLIDGV------LGSGKTW 165

Query: 257 -----YNDQKPKGHGNGKA--IKFG--------------LANQMNQP-QEKKRKSLALTY 294
                    K +   + K   +                 L  Q++     +   S  +  
Sbjct: 166 VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKL 225

Query: 295 TEQEVKQWCEE--RRKNYPT--------------KA-NIN-KKL--TEKQSNSDVIDKEA 334
               ++       + K Y                 A N++ K L  T  +  +D +    
Sbjct: 226 RIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAAT 285

Query: 335 KMR-----------REQLKEILAKQAELGVEVAEIPSYYLLDSKKQVRARVENTMPL--- 380
                          +++K +L K   L     ++P              V  T P    
Sbjct: 286 TTHISLDHHSMTLTPDEVKSLLLKY--LDCRPQDLPR------------EVLTTNPRRLS 331

Query: 381 -------NKRGRFQNNYDKRGRYKRKDQFSKEQKLADKDSSNTSSFNKKKPTLLQKLLSA 433
                  +    +  N+    ++   D+ +   +         SS N  +P   +K+   
Sbjct: 332 IIAESIRDGLATWD-NW----KHVNCDKLTTIIE---------SSLNVLEPAEYRKM--- 374

Query: 434 DVKRDKSHLLQTFRFMAINSFFKD-----------WPEKPVNFPLVMVKDGGAAGEVVEE 482
                       F  +++  F              W +   +  +V+V         + +
Sbjct: 375 ------------FDRLSV--FPPSAHIPTILLSLIWFDVIKSDVMVVVNK-------LHK 413

Query: 483 KSLLLGEEDSEGKGRRMVEH---FE---HDENRERMHHNI-------QGFEDENDDEEED 529
            SL+  E+    K   +       E     EN   +H +I       + F D +D     
Sbjct: 414 YSLV--EKQP--KESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTF-DSDDLIPPY 468

Query: 530 NDNGEQMKVYI 540
            D       Y 
Sbjct: 469 LDQ------YF 473

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 43.2 bits (101), Expect = 6e-05
 Identities = 15/82 (18%), Positives = 35/82 (42%), Gaps = 27/82 (32%)

Query: 296 EQE-VKQWCEERRKNYPTKANINKKLTEKQSNSDVIDKEAKMRREQLKEILAKQAELGVE 354
           E E +++W EE+R          K+L E        D  +K+  ++ +E    +A+    
Sbjct: 83  EPESIRKWREEQR----------KRLQEL-------DAASKVMEQEWRE----KAK---- 117

Query: 355 VAEIPSYYLLDSKKQVRARVEN 376
             ++  +    S++  + ++ N
Sbjct: 118 -KDLEEWNQRQSEQVEKNKINN 138

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	562
d2cqea1	56	Zinc finger CCCH domain-containing protein C19orf7	92.99
d1m9oa_	40	Tristetraproline (ttp, tis11, nup475) {Mouse (Mus	85.87
d1rgoa1	36	Butyrate response factor 2 (Tis11D) {Human (Homo s	81.99

>d2cqea1 g.66.1.1 (A:458-513) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.99  E-value=0.012  Score=45.06  Aligned_cols=24  Identities=8%  Similarity=-0.003  Sum_probs=19.7

Q ss_pred             CcceeccCCCCcccCCCCccchhhh
Q 008530          383 RGRFQNNYDKRGRYKRKDQFSKEQK  407 (562)
Q Consensus       383 ~CKF~nrGg~RgRcgRKcRFsh~~k  407 (562)
                      +||||.+|+ +|=-|.+|+|+|.+-
T Consensus         2 PCK~yHtg~-kCy~gd~C~FSH~pL   25 (56)
T d2cqea1           2 PCKLYHTTG-NCINGDDCMFSHDPL   25 (56)
T ss_dssp             BCSHHHHTS-CCSSCTTCSSBCCCC
T ss_pred             CcceeecCC-cccCCCcccccCCcc
Confidence            699999987 455789999999654

>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Tristetraproline (ttp, tis11, nup475)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=85.87  E-value=0.17  Score=35.71  Aligned_cols=27  Identities=26%  Similarity=0.219  Sum_probs=22.2

Q ss_pred             CCCCcceeccCCCCcccCCCCccchhhh
Q 008530          380 LNKRGRFQNNYDKRGRYKRKDQFSKEQK  407 (562)
Q Consensus       380 ~~K~CKF~nrGg~RgRcgRKcRFsh~~k  407 (562)
                      .++-|++|.++| .|++|.+|.|+|...
T Consensus         8 KT~lC~~~~~~g-~C~~G~~C~FAHg~~   34 (40)
T d1m9oa_           8 KTELCRTYSESG-RCRYGAKCQFAHGLG   34 (40)
T ss_dssp             CSCCCSGGGGTS-CCTTTTTCSSCSSSC
T ss_pred             ccccChhhhcCC-cCCCCCCCCCCCCHH
Confidence            678999988765 578999999999653

>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.99  E-value=0.14  Score=35.54  Aligned_cols=27  Identities=19%  Similarity=0.124  Sum_probs=22.3

Q ss_pred             CCCCcceeccCCCCcccCCCCccchhhh
Q 008530          380 LNKRGRFQNNYDKRGRYKRKDQFSKEQK  407 (562)
Q Consensus       380 ~~K~CKF~nrGg~RgRcgRKcRFsh~~k  407 (562)
                      .++-|++|...| .|++|.+|.|+|-..
T Consensus         5 KT~lC~~~~~~g-~C~~G~~C~FAHg~~   31 (36)
T d1rgoa1           5 KTELCRPFEESG-TCKYGEKCQFAHGFH   31 (36)
T ss_dssp             TSSBCHHHHHHS-CCTTGGGCSSBSSGG
T ss_pred             chhhCcchhcCC-cCCCCCcCCCcCCHH
Confidence            578999988755 578999999999764