Citrus Sinensis ID: 008532
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 562 | 2.2.26 [Sep-21-2011] | |||||||
| Q9FMF7 | 563 | Dicarboxylate transporter | yes | no | 0.976 | 0.975 | 0.770 | 0.0 | |
| Q8L7Z9 | 564 | Dicarboxylate transporter | N/A | no | 0.838 | 0.835 | 0.817 | 0.0 | |
| Q9FMF8 | 549 | Dicarboxylate transporter | no | no | 0.966 | 0.989 | 0.681 | 0.0 | |
| Q41364 | 569 | Dicarboxylate transporter | N/A | no | 0.971 | 0.959 | 0.482 | 1e-138 | |
| Q9LXV3 | 557 | Dicarboxylate transporter | no | no | 0.919 | 0.928 | 0.465 | 1e-134 | |
| O34726 | 478 | Putative malate transport | yes | no | 0.825 | 0.970 | 0.491 | 1e-117 | |
| P75763 | 477 | Inner membrane protein Yb | N/A | no | 0.818 | 0.964 | 0.326 | 4e-68 | |
| Q57048 | 479 | Uncharacterized transport | yes | no | 0.820 | 0.962 | 0.359 | 7e-68 | |
| P0AE74 | 487 | Citrate carrier OS=Escher | N/A | no | 0.749 | 0.864 | 0.337 | 3e-67 | |
| P0AE75 | 487 | Citrate carrier OS=Escher | N/A | no | 0.749 | 0.864 | 0.337 | 3e-67 |
| >sp|Q9FMF7|DIT21_ARATH Dicarboxylate transporter 2.1, chloroplastic OS=Arabidopsis thaliana GN=DIT2-1 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 847 bits (2187), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 444/576 (77%), Positives = 495/576 (85%), Gaps = 27/576 (4%)
Query: 1 MESLALRSLSTTPTFSLPT-------TRSALFHRFPYKPISKSPPSIFPSHSRSFPTLRS 53
MES AL SLSTT T +L + +R +L R S+SPPS +LRS
Sbjct: 1 MESFALHSLSTTATSTLLSHHHHHHPSRLSLLRRTS----SRSPPSTI--------SLRS 48
Query: 54 RSLS-LSRPHIIRPIH------SSSQNDTASTVPPTNLPSPPPPRGAKLLPFVISISIGL 106
S+ LS P +++PI +++ D A PP + P P+GAKL+P ++SIS+GL
Sbjct: 49 LSVQPLSFP-LLKPIPRFSTRIAAAPQDNAPPPPPPSPSPSPSPQGAKLIPLILSISVGL 107
Query: 107 ILRFLVPKPVEVSPQAWQLLSIFLSTIAGLVLSPLPVGAWAFLGLTTSIVTRTLAFPTAF 166
ILRF VP P V+PQ WQLLSIFLSTIAGLVLSPLPVGAWAF+GLT SIVT+TL+F AF
Sbjct: 108 ILRFAVPVPEGVTPQGWQLLSIFLSTIAGLVLSPLPVGAWAFIGLTASIVTKTLSFSAAF 167
Query: 167 AAFTNEVIWLIVISFFFARGFVKTGLGDRIATYFVKWLGKSTLGLSYGLTFSEALIAPAM 226
+AFT+EVIWLIVISFFFARGFVKTGLGDRIATYFVKWLGKSTLGLSYGLT SEALIAPAM
Sbjct: 168 SAFTSEVIWLIVISFFFARGFVKTGLGDRIATYFVKWLGKSTLGLSYGLTLSEALIAPAM 227
Query: 227 PSTTARAGGVFLPIIKSLSLSAGSKPGDSSSKKLGSYLIQSQFQSAGNSSALFLTAAAQN 286
PSTTARAGG+FLPIIKSLSLSAGSKP DSSS+KLGSYLIQSQFQ AGNSSALFLTAAAQN
Sbjct: 228 PSTTARAGGIFLPIIKSLSLSAGSKPNDSSSRKLGSYLIQSQFQCAGNSSALFLTAAAQN 287
Query: 287 LLCLKLAEELGVIISSPWVSWFKAACVPALVALLATPLILYKLYPPEVKDTPDAPAMAAK 346
LLCLKLAEELGV+IS+PWVSWFKAA +PA+++LL TPLILYKLYPPE KDTP+AP +AA
Sbjct: 288 LLCLKLAEELGVVISNPWVSWFKAASLPAIISLLCTPLILYKLYPPETKDTPEAPGIAAT 347
Query: 347 KLKQLGPVTRNEWIMVGTMLLAVSLWIFGDALGIPSVVAAMIGLSILLLLGVLDWDDCLS 406
KLKQ+GPVT+NEWIMVGTMLLAV+LWI G+ LGIPSVVAAMIGLSILL+LGVL+WDDCLS
Sbjct: 348 KLKQMGPVTKNEWIMVGTMLLAVTLWICGETLGIPSVVAAMIGLSILLVLGVLNWDDCLS 407
Query: 407 EKSAWDTLAWFAVLVGMAGQLTNLGIVTWMSDSVAKCLQSFSLSWPAAFGVLQASYFLIH 466
EKSAWDTLAWFAVLVGMAGQLTNLG+VTWMSD VAK LQS SLSWPAAFG+LQA+YF IH
Sbjct: 408 EKSAWDTLAWFAVLVGMAGQLTNLGVVTWMSDCVAKVLQSLSLSWPAAFGLLQAAYFFIH 467
Query: 467 YLFASQTGHVGALYSAFLAMHLAAGVPGVLAALALAYNTNLFGAITHYSSGQAAVYYGAG 526
YLFASQTGHVGAL+SAFLAMH+AAGVPG+LAALALAYNTNLFGA+THYSSGQAAVYYGAG
Sbjct: 468 YLFASQTGHVGALFSAFLAMHIAAGVPGILAALALAYNTNLFGALTHYSSGQAAVYYGAG 527
Query: 527 YIDLPDVFKMGFTMALVNAIIWGVTGTFWWKFLGLY 562
Y+DLPDVFK+GF MA +NAIIWGV GTFWWKFLGLY
Sbjct: 528 YVDLPDVFKIGFVMATINAIIWGVVGTFWWKFLGLY 563
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Glutamate/malate translocator involved with DIT1 in primary ammonia assimilation and in the re-assimilation of ammonia generated by the photorespiratory pathway. Exports the end product of ammonia assimilation, glutamate, from plastids to the cytosol. The precursor for ammonia assimilation, 2-oxoglutarate, is imported from the cytosol by DIT1. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8L7Z9|DIT2_SPIOL Dicarboxylate transporter 2, chloroplastic OS=Spinacia oleracea GN=DIT2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 775 bits (2002), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 385/471 (81%), Positives = 437/471 (92%)
Query: 92 GAKLLPFVISISIGLILRFLVPKPVEVSPQAWQLLSIFLSTIAGLVLSPLPVGAWAFLGL 151
GAKL+P ++S+S+GL+LRF VPKP E++PQAWQLL+IFLST+AGLVLSPLPVGAWAFLG+
Sbjct: 94 GAKLIPLILSVSVGLLLRFAVPKPAELTPQAWQLLAIFLSTVAGLVLSPLPVGAWAFLGV 153
Query: 152 TTSIVTRTLAFPTAFAAFTNEVIWLIVISFFFARGFVKTGLGDRIATYFVKWLGKSTLGL 211
T S+VT+TL FPTAF AFTNEVIWLIVISFFFARGFVKTGLGDRIATYFVKWLGKSTLGL
Sbjct: 154 TASVVTKTLPFPTAFCAFTNEVIWLIVISFFFARGFVKTGLGDRIATYFVKWLGKSTLGL 213
Query: 212 SYGLTFSEALIAPAMPSTTARAGGVFLPIIKSLSLSAGSKPGDSSSKKLGSYLIQSQFQS 271
SYGLT SEAL+APAMPSTTARAGG+FLPIIKSLS+S+GS PG S KKLG+YLI +QFQS
Sbjct: 214 SYGLTISEALVAPAMPSTTARAGGIFLPIIKSLSISSGSLPGGESRKKLGTYLIMTQFQS 273
Query: 272 AGNSSALFLTAAAQNLLCLKLAEELGVIISSPWVSWFKAACVPALVALLATPLILYKLYP 331
AGNSSALFLTAAAQNLLCLKLAEELGV I+SPWV W KAA +PA VALL TPLILYKLYP
Sbjct: 274 AGNSSALFLTAAAQNLLCLKLAEELGVKIASPWVFWLKAASLPAFVALLLTPLILYKLYP 333
Query: 332 PEVKDTPDAPAMAAKKLKQLGPVTRNEWIMVGTMLLAVSLWIFGDALGIPSVVAAMIGLS 391
PE+KDTP+APA+AA+KLK +GPVT+NEW+MVGTMLLAVSLW+FG+ +G+ SVVAAM+GLS
Sbjct: 334 PELKDTPEAPALAAEKLKNMGPVTKNEWVMVGTMLLAVSLWVFGEKIGVSSVVAAMLGLS 393
Query: 392 ILLLLGVLDWDDCLSEKSAWDTLAWFAVLVGMAGQLTNLGIVTWMSDSVAKCLQSFSLSW 451
+LLLLGVLDW+DCL+EKSAWDTLAWFAVLVGMA QLTNLGIV+WMS VA+ L++ +LSW
Sbjct: 394 VLLLLGVLDWNDCLNEKSAWDTLAWFAVLVGMASQLTNLGIVSWMSGCVARSLKTMNLSW 453
Query: 452 PAAFGVLQASYFLIHYLFASQTGHVGALYSAFLAMHLAAGVPGVLAALALAYNTNLFGAI 511
PAAFG+LQA+YF +HYLFASQTGHVGALYSAFLAM++A+GVPGVLAALALAYNTNLFGA+
Sbjct: 454 PAAFGILQAAYFFVHYLFASQTGHVGALYSAFLAMNIASGVPGVLAALALAYNTNLFGAL 513
Query: 512 THYSSGQAAVYYGAGYIDLPDVFKMGFTMALVNAIIWGVTGTFWWKFLGLY 562
THYSSGQAAVYYGAGY+DLPDVFKMGF MA++NA IW V G WWK LG+Y
Sbjct: 514 THYSSGQAAVYYGAGYVDLPDVFKMGFIMAVINATIWTVVGGVWWKILGIY 564
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Glutamate/malate translocator involved with DIT1 in primary ammonia assimilation and in the re-assimilation of ammonia generated by the photorespiratory pathway. Exports the end product of ammonia assimilation, glutamate, from plastids to the cytosol. The precursor for ammonia assimilation, 2-oxoglutarate, is imported from the cytosol by DIT1. Spinacia oleracea (taxid: 3562) |
| >sp|Q9FMF8|DIT22_ARATH Dicarboxylate transporter 2.2, chloroplastic OS=Arabidopsis thaliana GN=DIT2-2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 736 bits (1901), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 387/568 (68%), Positives = 455/568 (80%), Gaps = 25/568 (4%)
Query: 1 MESLALRSLSTTPTFSLPTTRSALFHRFPYKPISKSPPSIFPSHSRSFPTLRSRSLSLSR 60
MESLALRS+S + ++ HR K + PPSI S PTLRS LS+S
Sbjct: 1 MESLALRSISLSASY-------LSLHRSSSKSFALLPPSISVHTS---PTLRS--LSISS 48
Query: 61 PHIIRPIHSSSQNDTASTVPPTN------LPSPPPPRGAKLLPFVISISIGLILRFLVPK 114
P + TAS++P PSPP P+GAKL+P IS+SIGLI+RFL+P+
Sbjct: 49 PRF-------TLRATASSLPEEQNKPQPPPPSPPQPQGAKLIPLAISVSIGLIVRFLIPR 101
Query: 115 PVEVSPQAWQLLSIFLSTIAGLVLSPLPVGAWAFLGLTTSIVTRTLAFPTAFAAFTNEVI 174
P +V+ Q WQLLSIFL TI+GLVL PLPVGAWAF+GLT SIVT+TL F TAFAAFTNE+I
Sbjct: 102 PEQVTSQGWQLLSIFLFTISGLVLGPLPVGAWAFIGLTASIVTKTLPFSTAFAAFTNELI 161
Query: 175 WLIVISFFFARGFVKTGLGDRIATYFVKWLGKSTLGLSYGLTFSEALIAPAMPSTTARAG 234
WLI ISFFFARGF+KTGLGDRIATYFVKWLGKSTLGLSYGL F E L+ MPST ARAG
Sbjct: 162 WLIAISFFFARGFIKTGLGDRIATYFVKWLGKSTLGLSYGLAFCETLMGLIMPSTMARAG 221
Query: 235 GVFLPIIKSLSLSAGSKPGDSSSKKLGSYLIQSQFQSAGNSSALFLTAAAQNLLCLKLAE 294
GVFLP+IKSL++SAGS PGD SS+KLGS+LIQ+Q Q +G S A+ LT+AAQNLLCLKLA
Sbjct: 222 GVFLPVIKSLAISAGSYPGDPSSRKLGSFLIQTQLQCSGASGAILLTSAAQNLLCLKLAR 281
Query: 295 ELGVIISSPWVSWFKAACVPALVALLATPLILYKLYPPEVKDTPDAPAMAAKKLKQLGPV 354
E+GV+IS+PW++WFK A VPA V+LL TPLI+YKLYPPE+K TP+APA AAKKL++LGP+
Sbjct: 282 EVGVVISNPWITWFKVASVPAFVSLLCTPLIIYKLYPPELKHTPEAPAAAAKKLERLGPI 341
Query: 355 TRNEWIMVGTMLLAVSLWIFGDALGIPSVVAAMIGLSILLLLGVLDWDDCLSEKSAWDTL 414
T+NEWIM+G M VSLW+FG+A+GI SVV+AMIGLS LLLLGV++WDDCLS+KSAWD+L
Sbjct: 342 TKNEWIMLGAMAFTVSLWVFGEAIGIASVVSAMIGLSTLLLLGVINWDDCLSDKSAWDSL 401
Query: 415 AWFAVLVGMAGQLTNLGIVTWMSDSVAKCLQSFSLSWPAAFGVLQASYFLIHYLFASQTG 474
WFAVL+GMAGQLTNLG+V WMSD VAK LQS SL+WPA+F +LQA Y LIHYLFASQTG
Sbjct: 402 TWFAVLIGMAGQLTNLGVVAWMSDCVAKLLQSLSLTWPASFIILQACYLLIHYLFASQTG 461
Query: 475 HVGALYSAFLAMHLAAGVPGVLAALALAYNTNLFGAITHYSSGQAAVYYGAGYIDLPDVF 534
H GALY FLAM +AAGVPGVLAAL LA+N NL GA+ HYS G AA+YYGAGY+DL D+F
Sbjct: 462 HAGALYPPFLAMQIAAGVPGVLAALCLAFNNNLSGALAHYSGGPAALYYGAGYVDLRDMF 521
Query: 535 KMGFTMALVNAIIWGVTGTFWWKFLGLY 562
++GF MALV AIIWG G+FWWKFLGLY
Sbjct: 522 RVGFVMALVQAIIWGGVGSFWWKFLGLY 549
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May be involved in the transport of dicarboxylate compounds. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q41364|DIT1_SPIOL Dicarboxylate transporter 1, chloroplastic OS=Spinacia oleracea GN=DIT1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 493 bits (1269), Expect = e-138, Method: Compositional matrix adjust.
Identities = 282/585 (48%), Positives = 386/585 (65%), Gaps = 39/585 (6%)
Query: 1 MESLALRSLSTTPTFSLPTTRSALFHRFP-YKPISKSPPSIFPSHSRSFPTLRS---RSL 56
M S+AL SL+++PT+SL F P KP+SKS PSI S P+LRS +S
Sbjct: 1 MASMAL-SLTSSPTYSLS------FRSLPSLKPLSKSQPSI------SLPSLRSNASKSP 47
Query: 57 SLSR-----------PHIIRPIHSSSQNDTASTVPPTNLPSP-------PPPRGAKLLPF 98
SLS PH ++PI +SS + P P+P P +GA + P
Sbjct: 48 SLSHKHFLSPPSLLLPHKLKPISASSPTNPPPPPAPVPSPAPVSAPAQVQPWQGASIKPL 107
Query: 99 VISISIGLILRFLVPKPVEVSPQAWQLLSIFLSTIAGLVLSPLPVGAWAFLGLTTSIVTR 158
+ SI G+I+ F +P P VS AWQLL+IFLSTI G++ PLP+GA A +GL S++T+
Sbjct: 108 LASILTGVIIWF-IPTPEGVSRNAWQLLAIFLSTIVGIITQPLPLGAVALMGLGASVLTK 166
Query: 159 TLAFPTAFAAFTNEVIWLIVISFFFARGFVKTGLGDRIATYFVKWLGKSTLGLSYGLTFS 218
TL F AF+AF + + WLI ++FFFARGF+KTGLG+RIA FVK G S+LGL Y L FS
Sbjct: 167 TLTFSAAFSAFGDPIPWLIALAFFFARGFIKTGLGNRIAYQFVKLFGSSSLGLGYSLVFS 226
Query: 219 EALIAPAMPSTTARAGGVFLPIIKSLSLSAGSKPGDSSSKKLGSYLIQSQFQSAGNSSAL 278
EAL+APA+PS +ARAGG+FLP++KSL ++ GS GD + +KLG++L+ + FQ++ SS++
Sbjct: 227 EALLAPAIPSVSARAGGIFLPLVKSLCIACGSNVGDGTERKLGAWLMLTCFQTSVISSSM 286
Query: 279 FLTAAAQNLLCLKLA-EELGVIISSPWVSWFKAACVPALVALLATPLILYKLYPPEVKDT 337
FLTA A N L L +G I W+ W KAA VP LV+L+ PL+LY +YPPE+K +
Sbjct: 287 FLTAMAANPLSATLTFNTIGKAIG--WMDWAKAAFVPGLVSLIVVPLLLYVVYPPEIKSS 344
Query: 338 PDAPAMAAKKLKQLGPVTRNEWIMVGTMLLAVSLWIFGDALGIPSVVAAMIGLSILLLLG 397
PDAP +A +KL ++GP+T+NE IM T+LL V LW+FG LG+ +V AA++GLS+LL+ G
Sbjct: 345 PDAPRLAKEKLDKMGPMTKNESIMAVTLLLTVGLWVFGGKLGVDAVTAAILGLSVLLITG 404
Query: 398 VLDWDDCLSEKSAWDTLAWFAVLVGMAGQLTNLGIVTWMSDSVAKCLQSFSLSWPAAFGV 457
V+ W +CL+E AWDTL WFA L+ MAG L G++TW S++V K + LSW +FGV
Sbjct: 405 VVTWKECLAESVAWDTLTWFAALIAMAGYLNKYGLITWFSENVVKVVGGLGLSWQMSFGV 464
Query: 458 LQASYFLIHYLFASQTGHVGALYSAFLAMHLAAGVPGVLAALALAYNTNLFGAITHYSSG 517
L YF HY FAS H+GA+++AFL++ A G P LAA+ L++ +NL G +THY G
Sbjct: 465 LVLLYFYSHYFFASGAAHIGAMFTAFLSVASALGTPPFLAAIVLSFLSNLMGGLTHYGIG 524
Query: 518 QAAVYYGAGYIDLPDVFKMGFTMALVNAIIWGVTGTFWWKFLGLY 562
A V+YGA Y+ LP + GF +++VN IIW G WWK +GL+
Sbjct: 525 SAPVFYGANYVPLPQWWGYGFLISIVNLIIWLGVGGLWWKAIGLW 569
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Transports carbon skeletons into chloroplasts for net glutamate synthesis. This translocator exchanges malate for internal succinate, fumarate and 2-oxoglutarate but not for aspartate and glutamate. Spinacia oleracea (taxid: 3562) |
| >sp|Q9LXV3|DIT1_ARATH Dicarboxylate transporter 1, chloroplastic OS=Arabidopsis thaliana GN=DIT1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 478 bits (1230), Expect = e-134, Method: Compositional matrix adjust.
Identities = 257/552 (46%), Positives = 360/552 (65%), Gaps = 35/552 (6%)
Query: 43 SHSRSFPTLRSRSLSLSRP-----HIIRPIHS--------------SSQNDTASTVP--- 80
S S +FP L+SRSLSL RP ++ +P+ S S + +++ V
Sbjct: 9 SCSLAFP-LKSRSLSLPRPPSSSLNLTKPLRSLDSRFSLLKSPLPVSLRRRSSTLVKASS 67
Query: 81 ----------PTNLPSPPPPRGAKLLPFVISISIGLILRFLVPKPVEVSPQAWQLLSIFL 130
P +P+P P +GA + P + SI+ GLIL F VP P V+ AWQLL+IFL
Sbjct: 68 TVASASSSPTPPLVPAPVPWQGAAIKPLLASIATGLILWF-VPVPEGVTRNAWQLLAIFL 126
Query: 131 STIAGLVLSPLPVGAWAFLGLTTSIVTRTLAFPTAFAAFTNEVIWLIVISFFFARGFVKT 190
+TI G++ PLP+GA A +GL S++T+TL F AF+AF + + WLI ++FFFARGF+KT
Sbjct: 127 ATIVGIITQPLPLGAVALMGLGASVLTKTLTFAAAFSAFGDPIPWLIALAFFFARGFIKT 186
Query: 191 GLGDRIATYFVKWLGKSTLGLSYGLTFSEALIAPAMPSTTARAGGVFLPIIKSLSLSAGS 250
GLG+R+A FV+ G S+LGL Y L FSEAL+APA+PS +ARAGG+FLP++KSL ++ GS
Sbjct: 187 GLGNRVAYQFVRLFGSSSLGLGYSLVFSEALLAPAIPSVSARAGGIFLPLVKSLCVACGS 246
Query: 251 KPGDSSSKKLGSYLIQSQFQSAGNSSALFLTAAAQNLLCLKLAEELGVIISSPWVSWFKA 310
GD + +LGS+L+ + FQ++ SS++FLTA A N L LA + + W W KA
Sbjct: 247 NVGDGTEHRLGSWLMLTCFQTSVISSSMFLTAMAANPLSANLAFNT-IKQTIGWTDWAKA 305
Query: 311 ACVPALVALLATPLILYKLYPPEVKDTPDAPAMAAKKLKQLGPVTRNEWIMVGTMLLAVS 370
A VP LV+L+ P +LY +YPP VK +PDAP +A +KL ++GP+++NE IM T+ L V
Sbjct: 306 AIVPGLVSLIVVPFLLYLIYPPTVKSSPDAPKLAQEKLDKMGPMSKNELIMAATLFLTVG 365
Query: 371 LWIFGDALGIPSVVAAMIGLSILLLLGVLDWDDCLSEKSAWDTLAWFAVLVGMAGQLTNL 430
LWIFG LG+ +V AA++GLS+LL+ GV+ W +CL+E AWDTL WFA L+ MAG L
Sbjct: 366 LWIFGAKLGVDAVTAAILGLSVLLVTGVVTWKECLAESVAWDTLTWFAALIAMAGYLNKY 425
Query: 431 GIVTWMSDSVAKCLQSFSLSWPAAFGVLQASYFLIHYLFASQTGHVGALYSAFLAMHLAA 490
G++ W S +V K + LSW +FG+L YF HY FAS H+GA+++AFL++ A
Sbjct: 426 GLIEWFSQTVVKFVGGLGLSWQLSFGILVLLYFYTHYFFASGAAHIGAMFTAFLSVSTAL 485
Query: 491 GVPGVLAALALAYNTNLFGAITHYSSGQAAVYYGAGYIDLPDVFKMGFTMALVNAIIWGV 550
G P AAL LA+ +NL G +THY G A ++YGA Y+ L + GF +++VN +IW
Sbjct: 486 GTPPYFAALVLAFLSNLMGGLTHYGIGSAPIFYGANYVPLAKWWGYGFLISIVNILIWLG 545
Query: 551 TGTFWWKFLGLY 562
G WWKF+GL+
Sbjct: 546 VGGAWWKFIGLW 557
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2-oxoglutarate/malate translocator involved with DIT2-1 in primary ammonia assimilation and in the re-assimilation of ammonia generated by the photorespiratory pathway. Imports 2-oxoglutarate into plastids as precursor for ammonia assimilation. 2-oxoglutarate is converted to glutamate, the end product of ammonia assimilation, which is exported to the cytosol by DIT2-1. Arabidopsis thaliana (taxid: 3702) |
| >sp|O34726|YFLS_BACSU Putative malate transporter YflS OS=Bacillus subtilis (strain 168) GN=yflS PE=2 SV=1 | Back alignment and function description |
|---|
Score = 423 bits (1088), Expect = e-117, Method: Compositional matrix adjust.
Identities = 231/470 (49%), Positives = 327/470 (69%), Gaps = 6/470 (1%)
Query: 94 KLLPFVISISIGLILRFLVPKPVEVSPQAWQLLSIFLSTIAGLVLSPLPVGAWAFLGLTT 153
KL+P +I++++GLI+ F +P P + P+AW L +IF++TI G + PLP+GA A L
Sbjct: 14 KLVPLLITVAVGLIIWF-IPAPSGLEPKAWHLFAIFVATIIGFISKPLPMGAIAIFALAV 72
Query: 154 SIVTRTLAFPTAFAAFTNEVIWLIVISFFFARGFVKTGLGDRIATYFVKWLGKSTLGLSY 213
+ +T TL+ + F N+ IWLIVI+FF +RGF+KTGLG RI+ FV+ GK TLGLSY
Sbjct: 73 TALTGTLSIEDTLSGFGNKTIWLIVIAFFISRGFIKTGLGARISYVFVQKFGKKTLGLSY 132
Query: 214 GLTFSEALIAPAMPSTTARAGGVFLPIIKSLSLSAGSKPGDSSSKKLGSYLIQSQFQSAG 273
L FS+ +++PA+PS TARAGG+ PII+SLS + GS P + + +K+G++L+++ FQ
Sbjct: 133 SLLFSDLILSPAIPSNTARAGGIIFPIIRSLSETFGSSPANGTERKIGAFLLKTGFQGNL 192
Query: 274 NSSALFLTAAAQNLLCLKLAEEL-GVIISSPWVSWFKAACVPALVALLATPLILYKLYPP 332
+SA+FLTA A N L KLA ++ GV ++ W SW AA VP LV+L+ TPL++YKLYPP
Sbjct: 193 ITSAMFLTAMAANPLIAKLAHDVAGVDLT--WTSWAIAAIVPGLVSLIITPLVIYKLYPP 250
Query: 333 EVKDTPDAPAMAAKKLKQLGPVTRNEWIMVGTMLLAVSLWIFGDALGIPSVVAAMIGLSI 392
E+K+TPDA +A +KLK++GP ++E MV LL + LWIFG + I + A+IGL++
Sbjct: 251 EIKETPDAAKIATEKLKEMGPFKKSELSMVIVFLLVLVLWIFGGSFNIDATTTALIGLAV 310
Query: 393 LLLLGVLDWDDCLSEKSAWDTLAWFAVLVGMAGQLTNLGIVTWMSDSVAKCLQSFSLSWP 452
LLL VL WDD E+ AWDTL WFA LV +A L LG+V+W S+++ + F SW
Sbjct: 311 LLLSQVLTWDDIKKEQGAWDTLTWFAALVMLANFLNELGMVSWFSNAMKSSVSGF--SWI 368
Query: 453 AAFGVLQASYFLIHYLFASQTGHVGALYSAFLAMHLAAGVPGVLAALALAYNTNLFGAIT 512
AF +L Y+ HY FAS T H+ A+YSAFLA+ +AAG P +LAAL+LA+ +NLFG+ T
Sbjct: 369 VAFIILIVVYYYSHYFFASATAHISAMYSAFLAVVVAAGAPPLLAALSLAFISNLFGSTT 428
Query: 513 HYSSGQAAVYYGAGYIDLPDVFKMGFTMALVNAIIWGVTGTFWWKFLGLY 562
HY SG A V++GAGYI + +GF +++V+ I+W V G WWK LG++
Sbjct: 429 HYGSGAAPVFFGAGYIPQGKWWSIGFILSIVHIIVWLVIGGLWWKVLGIW 478
|
Might be a malate transporter. Bacillus subtilis (strain 168) (taxid: 224308) |
| >sp|P75763|YBHI_ECOLI Inner membrane protein YbhI OS=Escherichia coli (strain K12) GN=ybhI PE=1 SV=1 | Back alignment and function description |
|---|
Score = 259 bits (662), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 154/471 (32%), Positives = 262/471 (55%), Gaps = 11/471 (2%)
Query: 95 LLPFVISISIGLILRFLVPKPVEVSPQAWQLLSIFLSTIAGLVLSPLPVGAWAFLGLTTS 154
L ++ ++I I+ F+ P P +S AW L I+L+ I GLV+ P P + + S
Sbjct: 6 LWKLILILAIPCIIGFM-PAPAGLSELAWVLFGIYLAAIVGLVIKPFPEPVVLLIAVAAS 64
Query: 155 IVT----RTLAFPT--AFAAFTNEVIWLIVISFFFARGFVKTGLGDRIATYFVKWLGKST 208
+V AF T + +++ WL+ +F + FV TGLG RIA + +G +T
Sbjct: 65 MVVVGNLSDGAFKTTAVLSGYSSGTTWLVFSAFTLSAAFVTTGLGKRIAYLLIGKIGNTT 124
Query: 209 LGLSYGLTFSEALIAPAMPSTTARAGGVFLPIIKSLSLSAGSKPGDSSSKKLGSYLIQSQ 268
LGL Y F + ++APA PS TARAGG+ LPII S++++ GS+P + S +++G YL+ S
Sbjct: 125 LGLGYVTVFLDLVLAPATPSNTARAGGIVLPIINSVAVALGSEP-EKSPRRVGHYLMMSI 183
Query: 269 FQSAGNSSALFLTAAAQNLLCLKLAEELGVIISSPWVSWFKAACVPALVALLATPLILYK 328
+ +S +F TA A N+L LK+ ++ + + W W AA +P ++ LL TPL++Y
Sbjct: 184 YMVTKTTSYMFFTAMAGNILALKMINDI-LHLQISWGGWALAAGLPGIIMLLVTPLVIYT 242
Query: 329 LYPPEVKDTPDAPAMAAKKLKQLGPVTRNEWIMVGTMLLAVSLWIFGDALGIPSVVAAMI 388
+YPPE+K D +A L +LGP+ E +++G +LA+ WIF +LG+ A++
Sbjct: 243 MYPPEIKKV-DNKTIAKAGLAELGPMKIREKMLLGVFVLALLGWIFSKSLGVDESTVAIV 301
Query: 389 GLSILLLLGVLDWDDCLSEKSAWDTLAWFAVLVGMAGQLTNLGIVTWMSDSVAKCLQSFS 448
++ +LLLG++ W+D + K W+TL W+ ++G++ L+ + W+++ V K +F
Sbjct: 302 VMATMLLLGIVTWEDVVKNKGGWNTLIWYGGIIGLSSLLSKVKFFEWLAE-VFKNNLAFD 360
Query: 449 LSWPAAFGVLQASYFLIHYLFASQTGHVGALYSAFLAMHLAAGVPGVLAALALAYNTNLF 508
AF V+ ++ Y FAS + ++ A+ F + +G P +L ALAL ++ +
Sbjct: 361 GHGNVAFFVIIFLSIIVRYFFASGSAYIVAMLPVFAMLANVSGAPLMLTALALLFSNSYG 420
Query: 509 GAITHYSSGQAAVYYGAGYIDLPDVFKMGFTMALVNAIIWGVTGTFWWKFL 559
G +THY V +G GY D+ + +G + ++ ++ G +WW L
Sbjct: 421 GMVTHYGGAAGPVIFGVGYNDIKSWWLVGAVLTILTFLVHITLGVWWWNML 471
|
Escherichia coli (strain K12) (taxid: 83333) |
| >sp|Q57048|Y020_HAEIN Uncharacterized transporter HI_0020 OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=HI_0020 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 258 bits (660), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 171/476 (35%), Positives = 259/476 (54%), Gaps = 15/476 (3%)
Query: 93 AKLLPFVISISIGLILRFLVPKPVEVSPQAWQLLSIFLSTIAGLVLSPL--PVGAWAFLG 150
+K VI ++I LI FL+P P +S AW+LL ++++TI GLVL P PV A +
Sbjct: 4 SKNTKLVILMAIPLI-TFLLPAPDGLSLIAWRLLGVYIATIVGLVLKPYGEPVILLAAIA 62
Query: 151 LTTSIVTRT------LAFPTAFAAFTNEVIWLIVISFFFARGFVKTGLGDRIATYFVKWL 204
++ I+ T + + + WLI +F + FV TGLG RIA + + +
Sbjct: 63 VSGVIIGNTEGAKELVKVGNMLDGYKSGTTWLIFTAFTLSSAFVITGLGKRIAYHMIGAM 122
Query: 205 GKSTLGLSYGLTFSEALIAPAMPSTTARAGGVFLPIIKSLSLSAGSKPGDSSSKKLGSYL 264
G +TL L Y F + L++PA PS TAR+GG+ PII S+ ++ GS P + S KK G YL
Sbjct: 123 GSTTLRLGYVTMFLDLLLSPATPSNTARSGGIIFPIINSVVVALGSDP-EKSPKKAGRYL 181
Query: 265 IQSQFQSAGNSSALFLTAAAQNLLCLKL-AEELGVIISSPWVSWFKAACVPALVALLATP 323
+ + + +S +FLTA A N L L L A LG + W+ WF AA VP L+ L P
Sbjct: 182 MMNVYMVVKTTSYIFLTAMAPNALALSLMAPILG--FETTWIKWFLAASVPGLLCLFLIP 239
Query: 324 LILYKLYPPEVKDTPDAPAMAAKKLKQLGPVTRNEWIMVGTMLLAVSLWIFGDALGIPSV 383
LI Y + PPE+K D A+A K L++LGP++ E + ++A+ WIF ++L I +
Sbjct: 240 LICYWVSPPELKKV-DNKAIAKKGLEELGPMSFREKALSVLFVIALFGWIFSNSLHINAT 298
Query: 384 VAAMIGLSILLLLGVLDWDDCLSEKSAWDTLAWFAVLVGMAGQLTNLGIVTWMSDSVAKC 443
+ A+I + + ++L ++ WDD L K AW+TL W+ ++GM+G L G W++++++
Sbjct: 299 IVAIIVMVLCIVLSIVTWDDILKSKGAWNTLVWYGGIIGMSGLLEKSGFFKWLANTLSTI 358
Query: 444 LQSFSLSWPAAFGVLQASYFLIHYLFASQTGHVGALYSAFLAMHLAAGVPGVLAALALAY 503
LQ F A V+ + YLFAS +V A+ F + G P L AL L +
Sbjct: 359 LQ-FEGHGMMALIVILTLSVSVRYLFASGGAYVAAMVPVFATVGHVTGAPTELLALGLVF 417
Query: 504 NTNLFGAITHYSSGQAAVYYGAGYIDLPDVFKMGFTMALVNAIIWGVTGTFWWKFL 559
+ G++THY G + +GAGY D+ + G +A + II G WWK L
Sbjct: 418 ANSYGGSVTHYGGGPGPIAFGAGYNDIKSWWITGAIIAFGSLIIHLTIGMAWWKLL 473
|
Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) (taxid: 71421) |
| >sp|P0AE74|CITT_ECOLI Citrate carrier OS=Escherichia coli (strain K12) GN=citT PE=1 SV=1 | Back alignment and function description |
|---|
Score = 256 bits (654), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 152/450 (33%), Positives = 245/450 (54%), Gaps = 29/450 (6%)
Query: 110 FLVPKPVEVSPQAWQLLSIFLSTIAGLVLSPLPVGAWAFLGLTTSIV--------TRTLA 161
FL+P P + PQAW ++F++ I G++L P+P A +F+ +T ++ + LA
Sbjct: 22 FLIPVPDGMPPQAWHYFAVFVAMIVGMILEPIPATAISFIAVTICVIGSNYLLFDAKELA 81
Query: 162 FPT----------AFAAFTNEVIWLIVISFFFARGFVKTGLGDRIATYFVKWLGKSTLGL 211
P A F++ +WL+ +F FA G+ +GLG RIA + VK++GK TL L
Sbjct: 82 DPAFNAQKQALKWGLAGFSSTTVWLVFGAFIFALGYEVSGLGRRIALFLVKFMGKRTLTL 141
Query: 212 SYGLTFSEALIAPAMPSTTARAGGVFLPIIKSLSLSAGSKPGDSSSKKLGSYLIQSQFQS 271
Y + + L+AP PS TAR GG P+IK+L S P D S++++G YL+ S
Sbjct: 142 GYAIVIIDILLAPFTPSNTARTGGTVFPVIKNLPPLFKSFPNDPSARRIGGYLMWMMVIS 201
Query: 272 AGNSSALFLTAAAQNLLCLKLAEEL-GVIISSPWVSWFKAACVPALVALLATPLILYKLY 330
SS++F+T AA N+L L+ ++ G+ IS W+ WF ++ L+ P + Y LY
Sbjct: 202 TSLSSSMFVTGAAPNVLGLEFVSKIAGIQIS--WLQWFLCFLPVGVILLIIAPWLSYVLY 259
Query: 331 PPEVKDTPDAPAMAAKKLKQLGPVTRNEWIMVGTMLLAVSLWIFGDALGIPSVVAAMIGL 390
PE+ + + A +LK +G +TR EW ++G +LL++ LW+FG + I + ++ +
Sbjct: 260 KPEITHSEEVATWAGDELKTMGALTRREWTLIGLVLLSLGLWVFGSEV-INATAVGLLAV 318
Query: 391 SILLLLGVLDWDDCLSEKSAWDTLAWFAVLVGMAGQLTNLGIVTWMSDSVAKCLQSFSLS 450
S++L L V+ W D SAW+TL A LV MA LT G + W + +++ L+ FS +
Sbjct: 319 SLMLALHVVPWKDITRYNSAWNTLVNLATLVVMANGLTRSGFIDWFAGTMSTHLEGFSPN 378
Query: 451 WPAAFGVLQASYFLIHYLFASQTGHVGALYSAFLAMHLAAGVPGV---LAALALAYNTNL 507
A VL ++ HYLFAS + H + LA + G+PGV + L + +
Sbjct: 379 --ATVIVLVLVFYFAHYLFASLSAHTATMLPVILA--VGKGIPGVPMEQLCILLVLSIGI 434
Query: 508 FGAITHYSSGQAAVYYGAGYIDLPDVFKMG 537
G +T Y++G + YG GY+ D +++G
Sbjct: 435 MGCLTPYATGPGVIIYGCGYVKSKDYWRLG 464
|
Responsible for the uptake of citrate in exchange to the efflux of succinate. Has a relatively broad specificity for C(4)-dicarboxylates and tricarboxylates. Escherichia coli (strain K12) (taxid: 83333) |
| >sp|P0AE75|CITT_ECO57 Citrate carrier OS=Escherichia coli O157:H7 GN=citT PE=3 SV=1 | Back alignment and function description |
|---|
Score = 256 bits (654), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 152/450 (33%), Positives = 245/450 (54%), Gaps = 29/450 (6%)
Query: 110 FLVPKPVEVSPQAWQLLSIFLSTIAGLVLSPLPVGAWAFLGLTTSIV--------TRTLA 161
FL+P P + PQAW ++F++ I G++L P+P A +F+ +T ++ + LA
Sbjct: 22 FLIPVPDGMPPQAWHYFAVFVAMIVGMILEPIPATAISFIAVTICVIGSNYLLFDAKELA 81
Query: 162 FPT----------AFAAFTNEVIWLIVISFFFARGFVKTGLGDRIATYFVKWLGKSTLGL 211
P A F++ +WL+ +F FA G+ +GLG RIA + VK++GK TL L
Sbjct: 82 DPAFNAQKQALKWGLAGFSSTTVWLVFGAFIFALGYEVSGLGRRIALFLVKFMGKRTLTL 141
Query: 212 SYGLTFSEALIAPAMPSTTARAGGVFLPIIKSLSLSAGSKPGDSSSKKLGSYLIQSQFQS 271
Y + + L+AP PS TAR GG P+IK+L S P D S++++G YL+ S
Sbjct: 142 GYAIVIIDILLAPFTPSNTARTGGTVFPVIKNLPPLFKSFPNDPSARRIGGYLMWMMVIS 201
Query: 272 AGNSSALFLTAAAQNLLCLKLAEEL-GVIISSPWVSWFKAACVPALVALLATPLILYKLY 330
SS++F+T AA N+L L+ ++ G+ IS W+ WF ++ L+ P + Y LY
Sbjct: 202 TSLSSSMFVTGAAPNVLGLEFVSKIAGIQIS--WLQWFLCFLPVGVILLIIAPWLSYVLY 259
Query: 331 PPEVKDTPDAPAMAAKKLKQLGPVTRNEWIMVGTMLLAVSLWIFGDALGIPSVVAAMIGL 390
PE+ + + A +LK +G +TR EW ++G +LL++ LW+FG + I + ++ +
Sbjct: 260 KPEITHSEEVATWAGDELKTMGALTRREWTLIGLVLLSLGLWVFGSEV-INATAVGLLAV 318
Query: 391 SILLLLGVLDWDDCLSEKSAWDTLAWFAVLVGMAGQLTNLGIVTWMSDSVAKCLQSFSLS 450
S++L L V+ W D SAW+TL A LV MA LT G + W + +++ L+ FS +
Sbjct: 319 SLMLALHVVPWKDITRYNSAWNTLVNLATLVVMANGLTRSGFIDWFAGTMSTHLEGFSPN 378
Query: 451 WPAAFGVLQASYFLIHYLFASQTGHVGALYSAFLAMHLAAGVPGV---LAALALAYNTNL 507
A VL ++ HYLFAS + H + LA + G+PGV + L + +
Sbjct: 379 --ATVIVLVLVFYFAHYLFASLSAHTATMLPVILA--VGKGIPGVPMEQLCILLVLSIGI 434
Query: 508 FGAITHYSSGQAAVYYGAGYIDLPDVFKMG 537
G +T Y++G + YG GY+ D +++G
Sbjct: 435 MGCLTPYATGPGVIIYGCGYVKSKDYWRLG 464
|
Responsible for the uptake of citrate in exchange to the efflux of succinate. Has a relatively broad specificity for C(4)-dicarboxylates and tricarboxylates. Escherichia coli O157:H7 (taxid: 83334) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 562 | ||||||
| 224140763 | 569 | 2-oxoglutarate/malate translocator [Popu | 0.987 | 0.975 | 0.798 | 0.0 | |
| 15237659 | 563 | dicarboxylate transport 2.1 [Arabidopsis | 0.976 | 0.975 | 0.770 | 0.0 | |
| 22121982 | 583 | glutamate/malate translocator [Nicotiana | 0.951 | 0.917 | 0.794 | 0.0 | |
| 357445913 | 567 | 2-oxoglutarate/malate translocator [Medi | 0.985 | 0.977 | 0.758 | 0.0 | |
| 297797445 | 561 | DCT/DIT2.1 [Arabidopsis lyrata subsp. ly | 0.985 | 0.987 | 0.771 | 0.0 | |
| 312282645 | 561 | unnamed protein product [Thellungiella h | 0.983 | 0.985 | 0.773 | 0.0 | |
| 359475731 | 564 | PREDICTED: 2-oxoglutarate/malate translo | 0.839 | 0.836 | 0.860 | 0.0 | |
| 147864561 | 564 | hypothetical protein VITISV_000698 [Viti | 0.839 | 0.836 | 0.860 | 0.0 | |
| 141447993 | 519 | chloroplast glutamate/malate translocato | 0.921 | 0.998 | 0.771 | 0.0 | |
| 219884459 | 530 | unknown [Zea mays] gi|414589734|tpg|DAA4 | 0.918 | 0.973 | 0.784 | 0.0 |
| >gi|224140763|ref|XP_002323748.1| 2-oxoglutarate/malate translocator [Populus trichocarpa] gi|222866750|gb|EEF03881.1| 2-oxoglutarate/malate translocator [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 851 bits (2199), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 460/576 (79%), Positives = 501/576 (86%), Gaps = 21/576 (3%)
Query: 1 MESLALRSLSTTPTFSLPT-TRSALFHRFPYKPISKSPPSIFPSHSRSFPTLRSRSLSLS 59
MES AL SLS T TFS R++L HR P PIS + S S + S T+RS S
Sbjct: 1 MESFALHSLSATTTFSTSLYNRNSLLHRSP-GPISITKSS---STAHSLSTIRS---STQ 53
Query: 60 RPHIIRPIHSSSQ-----------NDTASTVPPTNLPSPPPP--RGAKLLPFVISISIGL 106
+P + H+ ++ + + P + P P P +GAKL+P +IS+SIGL
Sbjct: 54 KPLLFSLFHNKNKIFTSKSRILALDQESKDSPLSKSPEKPTPSLKGAKLIPLLISVSIGL 113
Query: 107 ILRFLVPKPVEVSPQAWQLLSIFLSTIAGLVLSPLPVGAWAFLGLTTSIVTRTLAFPTAF 166
I+RF VPKP+EV+PQAWQLLSIFLSTIAGLVLSPLPVGAWAFLGLTTS+VTRTL F TAF
Sbjct: 114 IVRFAVPKPIEVTPQAWQLLSIFLSTIAGLVLSPLPVGAWAFLGLTTSVVTRTLTFSTAF 173
Query: 167 AAFTNEVIWLIVISFFFARGFVKTGLGDRIATYFVKWLGKSTLGLSYGLTFSEALIAPAM 226
+AFT+EVIWLIVISFFFARGFVKTGLGDRIATYFVKWLGKSTLGLSYGLT SEALIAPAM
Sbjct: 174 SAFTSEVIWLIVISFFFARGFVKTGLGDRIATYFVKWLGKSTLGLSYGLTLSEALIAPAM 233
Query: 227 PSTTARAGGVFLPIIKSLSLSAGSKPGDSSSKKLGSYLIQSQFQSAGNSSALFLTAAAQN 286
PSTTARAGG+FLPIIKSLSLSAGSKPGD+SSKKLGSYL+QSQFQ + +SSALFLTAAAQN
Sbjct: 234 PSTTARAGGIFLPIIKSLSLSAGSKPGDTSSKKLGSYLVQSQFQCSSSSSALFLTAAAQN 293
Query: 287 LLCLKLAEELGVIISSPWVSWFKAACVPALVALLATPLILYKLYPPEVKDTPDAPAMAAK 346
LLCLKLAEELGVIISSPWVSWFKAA +PAL ++LATPLILYKLYPPE KDTPDAPA+AAK
Sbjct: 294 LLCLKLAEELGVIISSPWVSWFKAASLPALFSILATPLILYKLYPPETKDTPDAPAVAAK 353
Query: 347 KLKQLGPVTRNEWIMVGTMLLAVSLWIFGDALGIPSVVAAMIGLSILLLLGVLDWDDCLS 406
KL+ +GPVTRNEWIMVGTM+LAVSLW+FGDALGIPSVVAAMIGLSILLLLGVLDWDDCL
Sbjct: 354 KLETMGPVTRNEWIMVGTMVLAVSLWVFGDALGIPSVVAAMIGLSILLLLGVLDWDDCLI 413
Query: 407 EKSAWDTLAWFAVLVGMAGQLTNLGIVTWMSDSVAKCLQSFSLSWPAAFGVLQASYFLIH 466
EKSAWDTL WFAVLVGMAGQLTNLG+VTWMS VAK LQS SLSWPAAFG+LQASYFLIH
Sbjct: 414 EKSAWDTLVWFAVLVGMAGQLTNLGVVTWMSSCVAKVLQSVSLSWPAAFGILQASYFLIH 473
Query: 467 YLFASQTGHVGALYSAFLAMHLAAGVPGVLAALALAYNTNLFGAITHYSSGQAAVYYGAG 526
YLFASQTGHVGALYSAFLAMHLAAGVPG+LAALALAYNTNLFGAITHYSSGQAAVYYGAG
Sbjct: 474 YLFASQTGHVGALYSAFLAMHLAAGVPGILAALALAYNTNLFGAITHYSSGQAAVYYGAG 533
Query: 527 YIDLPDVFKMGFTMALVNAIIWGVTGTFWWKFLGLY 562
Y+DLPDVFKMGFTMAL+NAIIWGVTGTFWWKFLGLY
Sbjct: 534 YVDLPDVFKMGFTMALINAIIWGVTGTFWWKFLGLY 569
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15237659|ref|NP_201234.1| dicarboxylate transport 2.1 [Arabidopsis thaliana] gi|75171656|sp|Q9FMF7.1|DIT21_ARATH RecName: Full=Dicarboxylate transporter 2.1, chloroplastic; AltName: Full=AtpDCT1; AltName: Full=Glutamate/malate translocator; Flags: Precursor gi|9759405|dbj|BAB09860.1| 2-oxoglutarate/malate translocator [Arabidopsis thaliana] gi|15810581|gb|AAL07178.1| putative 2-oxoglutarate/malate translocator protein [Arabidopsis thaliana] gi|23397031|gb|AAN31801.1| putative 2-oxoglutarate/malate translocator [Arabidopsis thaliana] gi|53850569|gb|AAU95461.1| At5g64290 [Arabidopsis thaliana] gi|332010483|gb|AED97866.1| dicarboxylate transport 2.1 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 847 bits (2187), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 444/576 (77%), Positives = 495/576 (85%), Gaps = 27/576 (4%)
Query: 1 MESLALRSLSTTPTFSLPT-------TRSALFHRFPYKPISKSPPSIFPSHSRSFPTLRS 53
MES AL SLSTT T +L + +R +L R S+SPPS +LRS
Sbjct: 1 MESFALHSLSTTATSTLLSHHHHHHPSRLSLLRRTS----SRSPPSTI--------SLRS 48
Query: 54 RSLS-LSRPHIIRPIH------SSSQNDTASTVPPTNLPSPPPPRGAKLLPFVISISIGL 106
S+ LS P +++PI +++ D A PP + P P+GAKL+P ++SIS+GL
Sbjct: 49 LSVQPLSFP-LLKPIPRFSTRIAAAPQDNAPPPPPPSPSPSPSPQGAKLIPLILSISVGL 107
Query: 107 ILRFLVPKPVEVSPQAWQLLSIFLSTIAGLVLSPLPVGAWAFLGLTTSIVTRTLAFPTAF 166
ILRF VP P V+PQ WQLLSIFLSTIAGLVLSPLPVGAWAF+GLT SIVT+TL+F AF
Sbjct: 108 ILRFAVPVPEGVTPQGWQLLSIFLSTIAGLVLSPLPVGAWAFIGLTASIVTKTLSFSAAF 167
Query: 167 AAFTNEVIWLIVISFFFARGFVKTGLGDRIATYFVKWLGKSTLGLSYGLTFSEALIAPAM 226
+AFT+EVIWLIVISFFFARGFVKTGLGDRIATYFVKWLGKSTLGLSYGLT SEALIAPAM
Sbjct: 168 SAFTSEVIWLIVISFFFARGFVKTGLGDRIATYFVKWLGKSTLGLSYGLTLSEALIAPAM 227
Query: 227 PSTTARAGGVFLPIIKSLSLSAGSKPGDSSSKKLGSYLIQSQFQSAGNSSALFLTAAAQN 286
PSTTARAGG+FLPIIKSLSLSAGSKP DSSS+KLGSYLIQSQFQ AGNSSALFLTAAAQN
Sbjct: 228 PSTTARAGGIFLPIIKSLSLSAGSKPNDSSSRKLGSYLIQSQFQCAGNSSALFLTAAAQN 287
Query: 287 LLCLKLAEELGVIISSPWVSWFKAACVPALVALLATPLILYKLYPPEVKDTPDAPAMAAK 346
LLCLKLAEELGV+IS+PWVSWFKAA +PA+++LL TPLILYKLYPPE KDTP+AP +AA
Sbjct: 288 LLCLKLAEELGVVISNPWVSWFKAASLPAIISLLCTPLILYKLYPPETKDTPEAPGIAAT 347
Query: 347 KLKQLGPVTRNEWIMVGTMLLAVSLWIFGDALGIPSVVAAMIGLSILLLLGVLDWDDCLS 406
KLKQ+GPVT+NEWIMVGTMLLAV+LWI G+ LGIPSVVAAMIGLSILL+LGVL+WDDCLS
Sbjct: 348 KLKQMGPVTKNEWIMVGTMLLAVTLWICGETLGIPSVVAAMIGLSILLVLGVLNWDDCLS 407
Query: 407 EKSAWDTLAWFAVLVGMAGQLTNLGIVTWMSDSVAKCLQSFSLSWPAAFGVLQASYFLIH 466
EKSAWDTLAWFAVLVGMAGQLTNLG+VTWMSD VAK LQS SLSWPAAFG+LQA+YF IH
Sbjct: 408 EKSAWDTLAWFAVLVGMAGQLTNLGVVTWMSDCVAKVLQSLSLSWPAAFGLLQAAYFFIH 467
Query: 467 YLFASQTGHVGALYSAFLAMHLAAGVPGVLAALALAYNTNLFGAITHYSSGQAAVYYGAG 526
YLFASQTGHVGAL+SAFLAMH+AAGVPG+LAALALAYNTNLFGA+THYSSGQAAVYYGAG
Sbjct: 468 YLFASQTGHVGALFSAFLAMHIAAGVPGILAALALAYNTNLFGALTHYSSGQAAVYYGAG 527
Query: 527 YIDLPDVFKMGFTMALVNAIIWGVTGTFWWKFLGLY 562
Y+DLPDVFK+GF MA +NAIIWGV GTFWWKFLGLY
Sbjct: 528 YVDLPDVFKIGFVMATINAIIWGVVGTFWWKFLGLY 563
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|22121982|gb|AAM89397.1| glutamate/malate translocator [Nicotiana tabacum] | Back alignment and taxonomy information |
|---|
Score = 842 bits (2176), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 445/560 (79%), Positives = 482/560 (86%), Gaps = 25/560 (4%)
Query: 5 ALRSLSTTPTFSLPTTRSALFHRFPY--KPISKSPPSIFPSHSRSFPTLRSRSLSLSRPH 62
+LRS + P F+L R LFH P+ P+SK PSH
Sbjct: 47 SLRSPPSGPGFNLSGPRFNLFHPKPFIFNPLSKPTSKNSPSH------------------ 88
Query: 63 IIRPIHSSSQNDTASTVPPTNLPSPPPPRGAKLLPFVISISIGLILRFLVPKPVEVSPQA 122
+PI++SS D V + + P P+GAKL+P +IS+SIGLI+RF VPKP EVSPQA
Sbjct: 89 --KPINASSSPDPDKVV---TIDAKPKPQGAKLIPLIISVSIGLIVRFFVPKPPEVSPQA 143
Query: 123 WQLLSIFLSTIAGLVLSPLPVGAWAFLGLTTSIVTRTLAFPTAFAAFTNEVIWLIVISFF 182
WQLLSIFLSTIAGLVLSPLPVGAWAFLGLTTS++T+TL F AF AFTNEVIWLIVISFF
Sbjct: 144 WQLLSIFLSTIAGLVLSPLPVGAWAFLGLTTSVLTKTLTFTAAFNAFTNEVIWLIVISFF 203
Query: 183 FARGFVKTGLGDRIATYFVKWLGKSTLGLSYGLTFSEALIAPAMPSTTARAGGVFLPIIK 242
FARGFVKTGLGDRIATYFVKWLGKSTLGLSYGLT SEALIAPAMPSTTARAGGVFLPIIK
Sbjct: 204 FARGFVKTGLGDRIATYFVKWLGKSTLGLSYGLTLSEALIAPAMPSTTARAGGVFLPIIK 263
Query: 243 SLSLSAGSKPGDSSSKKLGSYLIQSQFQSAGNSSALFLTAAAQNLLCLKLAEELGVIISS 302
SLSLSAGSKPGD SS+KLGSYLIQSQFQSAGNSSALFLTAAAQNLLCLKLAEELGV+IS+
Sbjct: 264 SLSLSAGSKPGDPSSRKLGSYLIQSQFQSAGNSSALFLTAAAQNLLCLKLAEELGVVISN 323
Query: 303 PWVSWFKAACVPALVALLATPLILYKLYPPEVKDTPDAPAMAAKKLKQLGPVTRNEWIMV 362
PWVSWFKAA +PA ++LLATP ILYKL+PPE KDTPDAPAMAAKKL +GPVT+NEW+M+
Sbjct: 324 PWVSWFKAASLPAFISLLATPFILYKLFPPETKDTPDAPAMAAKKLDLMGPVTKNEWVMI 383
Query: 363 GTMLLAVSLWIFGDALGIPSVVAAMIGLSILLLLGVLDWDDCLSEKSAWDTLAWFAVLVG 422
GTMLLAVSLW+FGDALGI SVVAAM+GLSILLLLGVLDWDDCLSEKSAWDTLAWFAVLVG
Sbjct: 384 GTMLLAVSLWVFGDALGIASVVAAMLGLSILLLLGVLDWDDCLSEKSAWDTLAWFAVLVG 443
Query: 423 MAGQLTNLGIVTWMSDSVAKCLQSFSLSWPAAFGVLQASYFLIHYLFASQTGHVGALYSA 482
MAGQLTNLGIV WMS VAK LQ+ SLSWPAAFGVLQA+YF IHYLFASQTGHVGALYSA
Sbjct: 444 MAGQLTNLGIVGWMSSCVAKSLQALSLSWPAAFGVLQAAYFFIHYLFASQTGHVGALYSA 503
Query: 483 FLAMHLAAGVPGVLAALALAYNTNLFGAITHYSSGQAAVYYGAGYIDLPDVFKMGFTMAL 542
FLAMHLA+GVPGVLAALALAYNTNLFGA+THYSSGQAAVY+GAGY+DLPDVFKMGF MAL
Sbjct: 504 FLAMHLASGVPGVLAALALAYNTNLFGALTHYSSGQAAVYFGAGYVDLPDVFKMGFIMAL 563
Query: 543 VNAIIWGVTGTFWWKFLGLY 562
VNA IWGV GTFWWKFLGLY
Sbjct: 564 VNATIWGVVGTFWWKFLGLY 583
|
Source: Nicotiana tabacum Species: Nicotiana tabacum Genus: Nicotiana Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357445913|ref|XP_003593234.1| 2-oxoglutarate/malate translocator [Medicago truncatula] gi|355482282|gb|AES63485.1| 2-oxoglutarate/malate translocator [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 831 bits (2147), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 436/575 (75%), Positives = 484/575 (84%), Gaps = 21/575 (3%)
Query: 1 MESLALRSLSTT--PTFSL----------PTTRSALFHRFPYKPISKSPPSIFPSHSRSF 48
MES AL SLSTT PTF L P RS F P P S+S PS+ S S SF
Sbjct: 1 MESFALHSLSTTSSPTFFLHHLHHHRSSRPIFRSQ-FSPLPQNPSSRSIPSLKSSQSFSF 59
Query: 49 PTLRSRSLSLSRPHIIRPIHSSSQNDTASTVPPT-NLPSPPPPRGAKLLPFVISISIGLI 107
P+ S S+PH PIH++S + + PP N+ +GAK +PF ISI IGLI
Sbjct: 60 PSKVSTFNLFSKPHF--PIHANSTPPPSPSSPPKPNIL-----QGAKPIPFAISILIGLI 112
Query: 108 LRFLVPKPVEVSPQAWQLLSIFLSTIAGLVLSPLPVGAWAFLGLTTSIVTRTLAFPTAFA 167
+RF VPKPVEV+PQAWQLLSIFLSTIAGLVLSPLPVGAWAFLGLT S+VT+TL F AF+
Sbjct: 113 VRFFVPKPVEVTPQAWQLLSIFLSTIAGLVLSPLPVGAWAFLGLTASVVTKTLTFTAAFS 172
Query: 168 AFTNEVIWLIVISFFFARGFVKTGLGDRIATYFVKWLGKSTLGLSYGLTFSEALIAPAMP 227
AFTNEVIWLIVISFFFARGFVKTGLGDRIATYFVKW+GKSTLGLSYGLTFSE LIAPAMP
Sbjct: 173 AFTNEVIWLIVISFFFARGFVKTGLGDRIATYFVKWMGKSTLGLSYGLTFSEVLIAPAMP 232
Query: 228 STTARAGGVFLPIIKSLSLSAGSKPGDSSSKKLGSYLIQSQFQSAGNSSALFLTAAAQNL 287
STTARAGGVFLPIIKSLSLSAGS+P SSK+LG++LIQ+QFQSAGNSSALFLTAAAQNL
Sbjct: 233 STTARAGGVFLPIIKSLSLSAGSEPNSPSSKRLGAFLIQNQFQSAGNSSALFLTAAAQNL 292
Query: 288 LCLKLAEELGVIISSPWVSWFKAACVPALVALLATPLILYKLYPPEVKDTPDAPAMAAKK 347
LC+KLA+ELGV+IS+PWV+WFKAA VPA V LLATPLILY +YPPE+KDTP+APA+AAKK
Sbjct: 293 LCVKLAQELGVVISNPWVTWFKAASVPAFVCLLATPLILYTIYPPEIKDTPEAPALAAKK 352
Query: 348 LKQLGPVTRNEWIMVGTMLLAVSLWIFGDALGIPSVVAAMIGLSILLLLGVLDWDDCLSE 407
L+ +GPVT+NEW+MV TMLLAVSLWIFG+ LGI S VAAM+GLSILL+LGVLDWDDCL+E
Sbjct: 353 LETMGPVTQNEWVMVATMLLAVSLWIFGETLGIASAVAAMLGLSILLVLGVLDWDDCLNE 412
Query: 408 KSAWDTLAWFAVLVGMAGQLTNLGIVTWMSDSVAKCLQSFSLSWPAAFGVLQASYFLIHY 467
KSAWDTLAWFA+LVGMA QLTNLGIV+WMSD VA L+SFSLSWPA+ VLQA+YF IHY
Sbjct: 413 KSAWDTLAWFAILVGMASQLTNLGIVSWMSDCVANSLRSFSLSWPASLAVLQAAYFFIHY 472
Query: 468 LFASQTGHVGALYSAFLAMHLAAGVPGVLAALALAYNTNLFGAITHYSSGQAAVYYGAGY 527
LFASQTGHVGALYSAFLAMH AAGVPG LAALAL YNTNLFGAITHYSSGQAAVYYGAGY
Sbjct: 473 LFASQTGHVGALYSAFLAMHRAAGVPGTLAALALGYNTNLFGAITHYSSGQAAVYYGAGY 532
Query: 528 IDLPDVFKMGFTMALVNAIIWGVTGTFWWKFLGLY 562
+DLPD+FK GF MA +NAIIWG G+ WWKFLGLY
Sbjct: 533 VDLPDIFKTGFIMAFINAIIWGGVGSIWWKFLGLY 567
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297797445|ref|XP_002866607.1| DCT/DIT2.1 [Arabidopsis lyrata subsp. lyrata] gi|297312442|gb|EFH42866.1| DCT/DIT2.1 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 823 bits (2127), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 439/569 (77%), Positives = 485/569 (85%), Gaps = 15/569 (2%)
Query: 1 MESLALRSLSTTPTFSLPTTRSALFHRFP--YKPISKSPPSI-----FPSHSRSFPTLRS 53
MES AL+SLSTT T +L + R + S+SPPS P SFP L+
Sbjct: 1 MESFALQSLSTTATSNLLSHHHHHPSRLSLLRRTSSRSPPSTISLRSLPVQPLSFPLLKP 60
Query: 54 RSLSLSRPHIIRPIHSSSQNDTASTVPPTNLPSPPPPRGAKLLPFVISISIGLILRFLVP 113
P I I ++ Q++ PP + P +GAKL+P ++SIS+GLILRF VP
Sbjct: 61 I------PRISTRIAAAPQDNAPPPPPPPSPSPSP--QGAKLIPLILSISVGLILRFAVP 112
Query: 114 KPVEVSPQAWQLLSIFLSTIAGLVLSPLPVGAWAFLGLTTSIVTRTLAFPTAFAAFTNEV 173
P V+PQ WQLLSIFLSTIAGLVLSPLPVGAWAF+GLT SIVT+TL+F AF+AFT+EV
Sbjct: 113 VPEGVTPQGWQLLSIFLSTIAGLVLSPLPVGAWAFIGLTASIVTKTLSFSAAFSAFTSEV 172
Query: 174 IWLIVISFFFARGFVKTGLGDRIATYFVKWLGKSTLGLSYGLTFSEALIAPAMPSTTARA 233
IWLIVISFFFARGFVKTGLGDRIATYFVKWLGKSTLGLSYGLT SEALIAPAMPSTTARA
Sbjct: 173 IWLIVISFFFARGFVKTGLGDRIATYFVKWLGKSTLGLSYGLTLSEALIAPAMPSTTARA 232
Query: 234 GGVFLPIIKSLSLSAGSKPGDSSSKKLGSYLIQSQFQSAGNSSALFLTAAAQNLLCLKLA 293
GG+FLPIIKSLSLSAGSKPGDSSS+KLGSYLIQSQFQ AGNSSALFLTAAAQNLLCLKLA
Sbjct: 233 GGIFLPIIKSLSLSAGSKPGDSSSRKLGSYLIQSQFQCAGNSSALFLTAAAQNLLCLKLA 292
Query: 294 EELGVIISSPWVSWFKAACVPALVALLATPLILYKLYPPEVKDTPDAPAMAAKKLKQLGP 353
EELGV+IS+PWVSWFKAA +PA+++LL TP ILYKLYPPE KDTPDAP +AA KLKQ+GP
Sbjct: 293 EELGVVISNPWVSWFKAASLPAIISLLCTPFILYKLYPPETKDTPDAPGIAATKLKQMGP 352
Query: 354 VTRNEWIMVGTMLLAVSLWIFGDALGIPSVVAAMIGLSILLLLGVLDWDDCLSEKSAWDT 413
VT+NEWIMVGTMLLAV+LWI G+ LGIPSVVAAMIGLSILLLLGVL+WDDCLSEKSAWDT
Sbjct: 353 VTKNEWIMVGTMLLAVTLWICGETLGIPSVVAAMIGLSILLLLGVLNWDDCLSEKSAWDT 412
Query: 414 LAWFAVLVGMAGQLTNLGIVTWMSDSVAKCLQSFSLSWPAAFGVLQASYFLIHYLFASQT 473
LAWFAVLVGMAGQLTNLG+VTWMSD VAK LQS SL WPAAFG+LQA+YF IHYLFASQT
Sbjct: 413 LAWFAVLVGMAGQLTNLGVVTWMSDCVAKVLQSLSLGWPAAFGLLQAAYFFIHYLFASQT 472
Query: 474 GHVGALYSAFLAMHLAAGVPGVLAALALAYNTNLFGAITHYSSGQAAVYYGAGYIDLPDV 533
GHVGAL+SAFLAMH+AAGVPG+L ALALAYNTNLFGA+THYSSGQAAVYYGAGY+DLPDV
Sbjct: 473 GHVGALFSAFLAMHIAAGVPGILGALALAYNTNLFGALTHYSSGQAAVYYGAGYVDLPDV 532
Query: 534 FKMGFTMALVNAIIWGVTGTFWWKFLGLY 562
FK+GF MA +NAIIWGV GTFWWKFLGLY
Sbjct: 533 FKIGFVMATINAIIWGVVGTFWWKFLGLY 561
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|312282645|dbj|BAJ34188.1| unnamed protein product [Thellungiella halophila] | Back alignment and taxonomy information |
|---|
Score = 822 bits (2123), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 441/570 (77%), Positives = 489/570 (85%), Gaps = 17/570 (2%)
Query: 1 MESLALRSLSTTPT---FSLPTTRSALFHRFPYKPISKSPPSIFPSHSRSFPTLRSRSLS 57
MES AL SLSTT T FS +R +L R S+SPPS S P+LRS ++
Sbjct: 1 MESFALHSLSTTATSASFSHHPSRLSLLRRIS----SRSPPSTI-----SLPSLRSHTVQ 51
Query: 58 LSRPHIIRPIHSSSQNDTASTVPPTNLPSPPPP-----RGAKLLPFVISISIGLILRFLV 112
+++PI S S A+ P P +GAKL+P ++S+S+GLILRF V
Sbjct: 52 PLNFPLLKPIPSFSTRIAAAPRDDAPPPPSESPSPQPLQGAKLVPLLLSVSVGLILRFAV 111
Query: 113 PKPVEVSPQAWQLLSIFLSTIAGLVLSPLPVGAWAFLGLTTSIVTRTLAFPTAFAAFTNE 172
P V+PQ WQLLSIFLSTIAGLVLSPLPVGAWAF+GLT SIVTRTL+F AF+AFT+E
Sbjct: 112 SVPEGVTPQGWQLLSIFLSTIAGLVLSPLPVGAWAFIGLTASIVTRTLSFSAAFSAFTSE 171
Query: 173 VIWLIVISFFFARGFVKTGLGDRIATYFVKWLGKSTLGLSYGLTFSEALIAPAMPSTTAR 232
VIWLIVISFFFARGFVKTGLGDRIATYFVKWLGKSTLGLSYGLT SEALIAPAMPSTTAR
Sbjct: 172 VIWLIVISFFFARGFVKTGLGDRIATYFVKWLGKSTLGLSYGLTLSEALIAPAMPSTTAR 231
Query: 233 AGGVFLPIIKSLSLSAGSKPGDSSSKKLGSYLIQSQFQSAGNSSALFLTAAAQNLLCLKL 292
AGG+FLPIIKSLSLSAGSKPGDSSS+KLGSYLIQSQFQ AGNSSALFLTAAAQNLLCLKL
Sbjct: 232 AGGIFLPIIKSLSLSAGSKPGDSSSRKLGSYLIQSQFQCAGNSSALFLTAAAQNLLCLKL 291
Query: 293 AEELGVIISSPWVSWFKAACVPALVALLATPLILYKLYPPEVKDTPDAPAMAAKKLKQLG 352
AEELGV+I++PWVSWFKAA +PA+++LL TPLILYKLYPPE KDTPDAP +AA KLKQ+G
Sbjct: 292 AEELGVVIANPWVSWFKAASLPAIISLLCTPLILYKLYPPETKDTPDAPGIAALKLKQMG 351
Query: 353 PVTRNEWIMVGTMLLAVSLWIFGDALGIPSVVAAMIGLSILLLLGVLDWDDCLSEKSAWD 412
PVT+NEWIMVGTMLLAV+LWI G+ LGIPSVVAAMIGLSILLLLGVL+WDDCLSEKSAWD
Sbjct: 352 PVTKNEWIMVGTMLLAVTLWICGETLGIPSVVAAMIGLSILLLLGVLNWDDCLSEKSAWD 411
Query: 413 TLAWFAVLVGMAGQLTNLGIVTWMSDSVAKCLQSFSLSWPAAFGVLQASYFLIHYLFASQ 472
TLAWFAVLVGMAGQLTNLG+VTWMSD VAK LQS SLSWPAAFG+LQA+YF IHYLFASQ
Sbjct: 412 TLAWFAVLVGMAGQLTNLGVVTWMSDCVAKVLQSLSLSWPAAFGLLQAAYFFIHYLFASQ 471
Query: 473 TGHVGALYSAFLAMHLAAGVPGVLAALALAYNTNLFGAITHYSSGQAAVYYGAGYIDLPD 532
TGHVGAL+SAFLAM++AAGVPG+LAALALAYNTNLFGA+THYSSGQAAVYYGAGY+DLPD
Sbjct: 472 TGHVGALFSAFLAMNIAAGVPGILAALALAYNTNLFGALTHYSSGQAAVYYGAGYVDLPD 531
Query: 533 VFKMGFTMALVNAIIWGVTGTFWWKFLGLY 562
VFK+GF MA +NA+IWGV GTFWWKFLGLY
Sbjct: 532 VFKIGFVMATINAVIWGVVGTFWWKFLGLY 561
|
Source: Thellungiella halophila Species: Eutrema halophilum Genus: Eutrema Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359475731|ref|XP_002267754.2| PREDICTED: 2-oxoglutarate/malate translocator, chloroplastic-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 807 bits (2084), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 406/472 (86%), Positives = 447/472 (94%)
Query: 91 RGAKLLPFVISISIGLILRFLVPKPVEVSPQAWQLLSIFLSTIAGLVLSPLPVGAWAFLG 150
+GAKL+PF+ISISIGLI+RFLVPKPV+VS QAWQLL+IFLST+AGLVL+PLPVGAWAFLG
Sbjct: 93 KGAKLIPFIISISIGLIVRFLVPKPVQVSMQAWQLLAIFLSTVAGLVLNPLPVGAWAFLG 152
Query: 151 LTTSIVTRTLAFPTAFAAFTNEVIWLIVISFFFARGFVKTGLGDRIATYFVKWLGKSTLG 210
LTTSI+T TL+F TAF AFTNEVIWLIVISFFFARGFVKTGLGDR+A YFVKWLGKSTLG
Sbjct: 153 LTTSILTNTLSFSTAFGAFTNEVIWLIVISFFFARGFVKTGLGDRVANYFVKWLGKSTLG 212
Query: 211 LSYGLTFSEALIAPAMPSTTARAGGVFLPIIKSLSLSAGSKPGDSSSKKLGSYLIQSQFQ 270
LSYGLTFSE LIAPAMPSTTARAGG++LPIIKSLSLS GSKPGD S++KLG+YL+QSQFQ
Sbjct: 213 LSYGLTFSEILIAPAMPSTTARAGGIYLPIIKSLSLSVGSKPGDPSARKLGAYLVQSQFQ 272
Query: 271 SAGNSSALFLTAAAQNLLCLKLAEELGVIISSPWVSWFKAACVPALVALLATPLILYKLY 330
SAGNSSALFLTAAAQN+LCLKLAEE+GVI+SSPWVSWF+AA VPALV+LL +P ILY LY
Sbjct: 273 SAGNSSALFLTAAAQNMLCLKLAEEVGVIVSSPWVSWFRAASVPALVSLLLSPFILYNLY 332
Query: 331 PPEVKDTPDAPAMAAKKLKQLGPVTRNEWIMVGTMLLAVSLWIFGDALGIPSVVAAMIGL 390
PPE+KDTPDAPAMAAK+L+ +G VTR+EW+M+GTM+LAVSLW+FG+ALGI SVVAAM+GL
Sbjct: 333 PPEIKDTPDAPAMAAKRLEHMGSVTRDEWVMIGTMILAVSLWVFGEALGIASVVAAMLGL 392
Query: 391 SILLLLGVLDWDDCLSEKSAWDTLAWFAVLVGMAGQLTNLGIVTWMSDSVAKCLQSFSLS 450
SILLLLGVL+WDDCLSEKSAWDTLAWFAVLVGMAGQLTNLGIVTWMS VA LQSFSLS
Sbjct: 393 SILLLLGVLEWDDCLSEKSAWDTLAWFAVLVGMAGQLTNLGIVTWMSSCVANLLQSFSLS 452
Query: 451 WPAAFGVLQASYFLIHYLFASQTGHVGALYSAFLAMHLAAGVPGVLAALALAYNTNLFGA 510
WPAAFGVLQASYF IHYLFASQTGHVGALYSAFLAMH+AAGVPGVLAAL LAYNTNLFGA
Sbjct: 453 WPAAFGVLQASYFFIHYLFASQTGHVGALYSAFLAMHVAAGVPGVLAALTLAYNTNLFGA 512
Query: 511 ITHYSSGQAAVYYGAGYIDLPDVFKMGFTMALVNAIIWGVTGTFWWKFLGLY 562
+THYSSGQAAVYYGAGY+DLPDVFK+GF MAL NA+IW V G+FWWKFLGLY
Sbjct: 513 LTHYSSGQAAVYYGAGYVDLPDVFKVGFMMALSNAVIWVVVGSFWWKFLGLY 564
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147864561|emb|CAN78375.1| hypothetical protein VITISV_000698 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 806 bits (2083), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 406/472 (86%), Positives = 447/472 (94%)
Query: 91 RGAKLLPFVISISIGLILRFLVPKPVEVSPQAWQLLSIFLSTIAGLVLSPLPVGAWAFLG 150
+GAKL+PF+ISISIGLI+RFLVPKPV+VS QAWQLL+IFLST+AGLVL+PLPVGAWAFLG
Sbjct: 93 KGAKLIPFIISISIGLIVRFLVPKPVQVSMQAWQLLAIFLSTVAGLVLNPLPVGAWAFLG 152
Query: 151 LTTSIVTRTLAFPTAFAAFTNEVIWLIVISFFFARGFVKTGLGDRIATYFVKWLGKSTLG 210
L TSI+T TL+F TAF AFTNEVIWLIVISFFFARGFVKTGLGDR+A YFVKWLGKSTLG
Sbjct: 153 LXTSILTNTLSFSTAFGAFTNEVIWLIVISFFFARGFVKTGLGDRVANYFVKWLGKSTLG 212
Query: 211 LSYGLTFSEALIAPAMPSTTARAGGVFLPIIKSLSLSAGSKPGDSSSKKLGSYLIQSQFQ 270
LSYGLTFSE LIAPAMPSTTARAGG++LPIIKSLSLS GSKPGD S++KLG+YL+QSQFQ
Sbjct: 213 LSYGLTFSEILIAPAMPSTTARAGGIYLPIIKSLSLSVGSKPGDPSARKLGAYLVQSQFQ 272
Query: 271 SAGNSSALFLTAAAQNLLCLKLAEELGVIISSPWVSWFKAACVPALVALLATPLILYKLY 330
SAGNSSALFLTAAAQN+LCLKLAEE+GVI+SSPWVSWF+AA VPALV+LL +P ILY LY
Sbjct: 273 SAGNSSALFLTAAAQNMLCLKLAEEVGVIVSSPWVSWFRAASVPALVSLLLSPFILYNLY 332
Query: 331 PPEVKDTPDAPAMAAKKLKQLGPVTRNEWIMVGTMLLAVSLWIFGDALGIPSVVAAMIGL 390
PPE+KDTPDAPAMAAK+L+ +G VTR+EW+M+GTM+LAVSLW+FG+ALGI SVVAAM+GL
Sbjct: 333 PPEIKDTPDAPAMAAKRLEHMGSVTRDEWVMIGTMILAVSLWVFGEALGIASVVAAMLGL 392
Query: 391 SILLLLGVLDWDDCLSEKSAWDTLAWFAVLVGMAGQLTNLGIVTWMSDSVAKCLQSFSLS 450
SILLLLGVL+WDDCLSEKSAWDTLAWFAVLVGMAGQLTNLGIVTWMS VA LQSFSLS
Sbjct: 393 SILLLLGVLEWDDCLSEKSAWDTLAWFAVLVGMAGQLTNLGIVTWMSSCVANLLQSFSLS 452
Query: 451 WPAAFGVLQASYFLIHYLFASQTGHVGALYSAFLAMHLAAGVPGVLAALALAYNTNLFGA 510
WPAAFGVLQASYF IHYLFASQTGHVGALYSAFLAMH+AAGVPGVLAALALAYNTNLFGA
Sbjct: 453 WPAAFGVLQASYFFIHYLFASQTGHVGALYSAFLAMHVAAGVPGVLAALALAYNTNLFGA 512
Query: 511 ITHYSSGQAAVYYGAGYIDLPDVFKMGFTMALVNAIIWGVTGTFWWKFLGLY 562
+THYSSGQAAVYYGAGY+DLPDVFK+GF MAL NA+IW V G+FWWKFLGLY
Sbjct: 513 LTHYSSGQAAVYYGAGYVDLPDVFKVGFMMALSNAVIWVVVGSFWWKFLGLY 564
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|141447993|gb|ABO87605.1| chloroplast glutamate/malate translocator [Pisum sativum] | Back alignment and taxonomy information |
|---|
Score = 801 bits (2069), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 401/520 (77%), Positives = 452/520 (86%), Gaps = 2/520 (0%)
Query: 43 SHSRSFPTLRSRSLSLSRPHIIRPIHSSSQNDTASTVPPTNLPSPPPPRGAKLLPFVISI 102
+ S SFP+ S S+PH PIH++S + + P + P P +GAK +PF++SI
Sbjct: 2 TQSISFPSKPSTFNPFSKPHF--PIHANSSPPPSPSPPTKSEPLPTILQGAKPIPFLLSI 59
Query: 103 SIGLILRFLVPKPVEVSPQAWQLLSIFLSTIAGLVLSPLPVGAWAFLGLTTSIVTRTLAF 162
SIGLI+RF VPKPVEV+ QAWQLLSIFLSTIAGLVLSPLPVGAWAFLGLTTS+VT+TL F
Sbjct: 60 SIGLIVRFFVPKPVEVTAQAWQLLSIFLSTIAGLVLSPLPVGAWAFLGLTTSVVTKTLTF 119
Query: 163 PTAFAAFTNEVIWLIVISFFFARGFVKTGLGDRIATYFVKWLGKSTLGLSYGLTFSEALI 222
AF+AFTNEVIWLIVISFFFARGFVKTGLGDRIATYFVKW+GKSTLGLSYGL FSE LI
Sbjct: 120 TAAFSAFTNEVIWLIVISFFFARGFVKTGLGDRIATYFVKWMGKSTLGLSYGLVFSEVLI 179
Query: 223 APAMPSTTARAGGVFLPIIKSLSLSAGSKPGDSSSKKLGSYLIQSQFQSAGNSSALFLTA 282
APAMPSTTARAGGVFLPIIKSL+LSAGS+P +SK+LGS+L+Q+QFQ A NSSALFLTA
Sbjct: 180 APAMPSTTARAGGVFLPIIKSLALSAGSEPNSPTSKRLGSFLVQNQFQCAANSSALFLTA 239
Query: 283 AAQNLLCLKLAEELGVIISSPWVSWFKAACVPALVALLATPLILYKLYPPEVKDTPDAPA 342
AAQNLLC+KLAEELGVIIS+PWV+WFKAA +PA V LLATPLILYKL PPE+KDTP+APA
Sbjct: 240 AAQNLLCVKLAEELGVIISNPWVTWFKAASLPAFVCLLATPLILYKLCPPEIKDTPEAPA 299
Query: 343 MAAKKLKQLGPVTRNEWIMVGTMLLAVSLWIFGDALGIPSVVAAMIGLSILLLLGVLDWD 402
MA KKL+ +GPVT+NEWIMV TML AVSLWI GDA+GI S V AM+GLSILL+ GVLDW
Sbjct: 300 MATKKLETMGPVTKNEWIMVSTMLFAVSLWILGDAIGIASAVTAMVGLSILLVSGVLDWQ 359
Query: 403 DCLSEKSAWDTLAWFAVLVGMAGQLTNLGIVTWMSDSVAKCLQSFSLSWPAAFGVLQASY 462
DCL+EKSAWDTLAWFA+LVGMA QLTNLGIV WMSD VA LQ+FSLSWPA+ VLQ++Y
Sbjct: 360 DCLNEKSAWDTLAWFAILVGMASQLTNLGIVGWMSDCVANSLQTFSLSWPASLAVLQSAY 419
Query: 463 FLIHYLFASQTGHVGALYSAFLAMHLAAGVPGVLAALALAYNTNLFGAITHYSSGQAAVY 522
F IHYLFASQTGHVGAL+SAFLAM AAGVPGVLAALAL YNTNLFGAI+HYSSGQAAVY
Sbjct: 420 FFIHYLFASQTGHVGALFSAFLAMQRAAGVPGVLAALALGYNTNLFGAISHYSSGQAAVY 479
Query: 523 YGAGYIDLPDVFKMGFTMALVNAIIWGVTGTFWWKFLGLY 562
YGAGY+DLPD+F+ GF MA++NAIIWG G+ WWKFLGLY
Sbjct: 480 YGAGYVDLPDIFRTGFIMAVINAIIWGGVGSVWWKFLGLY 519
|
Source: Pisum sativum Species: Pisum sativum Genus: Pisum Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|219884459|gb|ACL52604.1| unknown [Zea mays] gi|414589734|tpg|DAA40305.1| TPA: 2-oxoglutarate/malate translocator [Zea mays] | Back alignment and taxonomy information |
|---|
Score = 801 bits (2068), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 408/520 (78%), Positives = 452/520 (86%), Gaps = 4/520 (0%)
Query: 47 SFPTLRSRSLSLSRPHIIRPIHSSSQNDT--ASTVPPTNLPSPPPP--RGAKLLPFVISI 102
SF S SLS H + P AS P +N P P GAKLLP VISI
Sbjct: 11 SFQNTYSPSLSSPHHHRLSPTLRRHLRLPLLASQAPNSNPEPEPEPEPTGAKLLPLVISI 70
Query: 103 SIGLILRFLVPKPVEVSPQAWQLLSIFLSTIAGLVLSPLPVGAWAFLGLTTSIVTRTLAF 162
+IGL +RFL P+PVEVSPQAWQLLSIFLSTIAGLVL PLPVGAWAFLGLT ++ TRTL F
Sbjct: 71 AIGLAVRFLAPRPVEVSPQAWQLLSIFLSTIAGLVLGPLPVGAWAFLGLTAAVATRTLPF 130
Query: 163 PTAFAAFTNEVIWLIVISFFFARGFVKTGLGDRIATYFVKWLGKSTLGLSYGLTFSEALI 222
AF+AFTNEVIWLIVISFFFARGFVKTGLGDRIATYFVKWLG STLGLSYGLT SEA I
Sbjct: 131 TAAFSAFTNEVIWLIVISFFFARGFVKTGLGDRIATYFVKWLGSSTLGLSYGLTLSEACI 190
Query: 223 APAMPSTTARAGGVFLPIIKSLSLSAGSKPGDSSSKKLGSYLIQSQFQSAGNSSALFLTA 282
APAMPSTTARAGGVFLPIIKSLSLSA SKP SS+KLGSYL+ +QFQ++GNSSALFLTA
Sbjct: 191 APAMPSTTARAGGVFLPIIKSLSLSAESKPNHPSSRKLGSYLVMTQFQASGNSSALFLTA 250
Query: 283 AAQNLLCLKLAEELGVIISSPWVSWFKAACVPALVALLATPLILYKLYPPEVKDTPDAPA 342
AAQNLLCLKLAEELGVII++PWVSWFKAA +PALV+LLATP +LYK++PPE KDTPDAPA
Sbjct: 251 AAQNLLCLKLAEELGVIIANPWVSWFKAASLPALVSLLATPYLLYKIFPPETKDTPDAPA 310
Query: 343 MAAKKLKQLGPVTRNEWIMVGTMLLAVSLWIFGDALGIPSVVAAMIGLSILLLLGVLDWD 402
+A KKLK +GPVT+NE +M+GTM+LAVSLW+FGDA+G+ SVVAAM+GLSILL+LGVLDWD
Sbjct: 311 LAEKKLKLMGPVTKNESVMIGTMILAVSLWVFGDAIGVSSVVAAMLGLSILLVLGVLDWD 370
Query: 403 DCLSEKSAWDTLAWFAVLVGMAGQLTNLGIVTWMSDSVAKCLQSFSLSWPAAFGVLQASY 462
DCL+EKSAWDTLAWFAVLVGMAGQLTNLGIV+WMS+ VAK LQSFSLSWP AF VL+ASY
Sbjct: 371 DCLNEKSAWDTLAWFAVLVGMAGQLTNLGIVSWMSNCVAKLLQSFSLSWPVAFCVLEASY 430
Query: 463 FLIHYLFASQTGHVGALYSAFLAMHLAAGVPGVLAALALAYNTNLFGAITHYSSGQAAVY 522
FLIHYLFASQTGHVGALYSAFLAMH+AAGVP VL+ALALA+NTNLFGAITHYSSGQAAVY
Sbjct: 431 FLIHYLFASQTGHVGALYSAFLAMHIAAGVPSVLSALALAFNTNLFGAITHYSSGQAAVY 490
Query: 523 YGAGYIDLPDVFKMGFTMALVNAIIWGVTGTFWWKFLGLY 562
+GAGY++LPDVF++GF AL N +IWGV GT WWKFLGLY
Sbjct: 491 FGAGYMELPDVFRLGFITALANTLIWGVVGTIWWKFLGLY 530
|
Source: Zea mays Species: Zea mays Genus: Zea Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 562 | ||||||
| TAIR|locus:2173358 | 563 | DIT2.1 "dicarboxylate transpor | 0.839 | 0.838 | 0.766 | 3.1e-193 | |
| UNIPROTKB|Q8L7Z9 | 564 | DIT2 "Dicarboxylate transporte | 0.871 | 0.868 | 0.688 | 2e-182 | |
| TAIR|locus:2173343 | 549 | DiT2.2 "dicarboxylate transpor | 0.839 | 0.859 | 0.644 | 6.3e-168 | |
| UNIPROTKB|Q41364 | 569 | DIT1 "Dicarboxylate transporte | 0.887 | 0.876 | 0.423 | 2.1e-109 | |
| TAIR|locus:2182270 | 557 | DiT1 "dicarboxylate transporte | 0.834 | 0.842 | 0.431 | 1.1e-105 | |
| TIGR_CMR|CHY_0060 | 466 | CHY_0060 "anion transporter fa | 0.823 | 0.993 | 0.389 | 3.6e-89 | |
| UNIPROTKB|P0AE74 | 487 | citT "citrate:succinate antipo | 0.677 | 0.782 | 0.306 | 6.9e-61 | |
| UNIPROTKB|P39414 | 487 | ttdT [Escherichia coli K-12 (t | 0.670 | 0.774 | 0.333 | 2.9e-56 | |
| UNIPROTKB|P75763 | 477 | ybhI "YbhI DASS Transporter" [ | 0.818 | 0.964 | 0.276 | 5.3e-56 | |
| TIGR_CMR|BA_2211 | 476 | BA_2211 "sodium/solute symport | 0.576 | 0.680 | 0.215 | 3.1e-08 |
| TAIR|locus:2173358 DIT2.1 "dicarboxylate transport 2.1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1872 (664.0 bits), Expect = 3.1e-193, P = 3.1e-193
Identities = 362/472 (76%), Positives = 388/472 (82%)
Query: 91 RGAKLLPFVISISIGLILRFLVPKPVEVSPQAWQLLSIFLSTIAGLVLSPLPVGAWAFLG 150
+GAKL+P ++SIS+GLILRF VP P V+PQ WQLLSIFLSTIAGLVLSPLPVGAWAF+G
Sbjct: 92 QGAKLIPLILSISVGLILRFAVPVPEGVTPQGWQLLSIFLSTIAGLVLSPLPVGAWAFIG 151
Query: 151 LTTSIVXXXXXXXXXXXXXXNEVIWLIVISFFFARGFVKTGLGDRIATYFVKWLGKSTLG 210
LT SIV +EVIWLIVISFFFARGFVKTGLGDRIATYFVKWLGKSTLG
Sbjct: 152 LTASIVTKTLSFSAAFSAFTSEVIWLIVISFFFARGFVKTGLGDRIATYFVKWLGKSTLG 211
Query: 211 LSYGLTFSEALIAPAMPSTTARAGGVFLPIIKSLSLSAGSKPGDSSSKKLGSYLIQSQFQ 270
LSYGLT SEALIAPAMPSTTARAGG+FLPIIKSLSLSAGSKP DSSS+KLGSYLIQSQFQ
Sbjct: 212 LSYGLTLSEALIAPAMPSTTARAGGIFLPIIKSLSLSAGSKPNDSSSRKLGSYLIQSQFQ 271
Query: 271 SAGNSSALFLTAAAQNLLCLKLAEELGVIISSPWVSWFKXXXXXXXXXXXXXXXXXYKLY 330
AGNSSALFLTAAAQNLLCLKLAEELGV+IS+PWVSWFK YKLY
Sbjct: 272 CAGNSSALFLTAAAQNLLCLKLAEELGVVISNPWVSWFKAASLPAIISLLCTPLILYKLY 331
Query: 331 PPEVKDTPDAPAMAAKKLKQLGPVTRNEWIMVGTMLLAVSLWIFGDALGIPSVVAAMIGX 390
PPE KDTP+AP +AA KLKQ+GPVT+NEWIMVGTMLLAV+LWI G+ LGIPSVVAAMIG
Sbjct: 332 PPETKDTPEAPGIAATKLKQMGPVTKNEWIMVGTMLLAVTLWICGETLGIPSVVAAMIGL 391
Query: 391 XXXXXXXXXXXXXXXSEKSAWDTLAWFAVLVGMAGQLTNLGIVTWMSDSVAKCLQSFSLS 450
SEKSAWDTLAWFAVLVGMAGQLTNLG+VTWMSD VAK LQS SLS
Sbjct: 392 SILLVLGVLNWDDCLSEKSAWDTLAWFAVLVGMAGQLTNLGVVTWMSDCVAKVLQSLSLS 451
Query: 451 WPAAFGVLQASYFLIHYLFASQTGHVGALYSAFLAMHXXXXXXXXXXXXXXXYNTNLFGA 510
WPAAFG+LQA+YF IHYLFASQTGHVGAL+SAFLAMH YNTNLFGA
Sbjct: 452 WPAAFGLLQAAYFFIHYLFASQTGHVGALFSAFLAMHIAAGVPGILAALALAYNTNLFGA 511
Query: 511 ITHYSSGQAAVYYGAGYIDLPDVFKMGFTMALVNAIIWGVTGTFWWKFLGLY 562
+THYSSGQAAVYYGAGY+DLPDVFK+GF MA +NAIIWGV GTFWWKFLGLY
Sbjct: 512 LTHYSSGQAAVYYGAGYVDLPDVFKIGFVMATINAIIWGVVGTFWWKFLGLY 563
|
|
| UNIPROTKB|Q8L7Z9 DIT2 "Dicarboxylate transporter 2, chloroplastic" [Spinacia oleracea (taxid:3562)] | Back alignment and assigned GO terms |
|---|
Score = 1770 (628.1 bits), Expect = 2.0e-182, P = 2.0e-182
Identities = 338/491 (68%), Positives = 386/491 (78%)
Query: 73 NDTASTVXXXXXXXXXXXR-GAKLLPFVISISIGLILRFLVPKPVEVSPQAWQLLSIFLS 131
N TAS+ + GAKL+P ++S+S+GL+LRF VPKP E++PQAWQLL+IFLS
Sbjct: 74 NATASSSSSPATTSPPPTKSGAKLIPLILSVSVGLLLRFAVPKPAELTPQAWQLLAIFLS 133
Query: 132 TIAGLVLSPLPVGAWAFLGLTTSIVXXXXXXXXXXXXXXNEVIWLIVISFFFARGFVKTG 191
T+AGLVLSPLPVGAWAFLG+T S+V NEVIWLIVISFFFARGFVKTG
Sbjct: 134 TVAGLVLSPLPVGAWAFLGVTASVVTKTLPFPTAFCAFTNEVIWLIVISFFFARGFVKTG 193
Query: 192 LGDRIATYFVKWLGKSTLGLSYGLTFSEALIAPAMPSTTARAGGVFLPIIKSLSLSAGSK 251
LGDRIATYFVKWLGKSTLGLSYGLT SEAL+APAMPSTTARAGG+FLPIIKSLS+S+GS
Sbjct: 194 LGDRIATYFVKWLGKSTLGLSYGLTISEALVAPAMPSTTARAGGIFLPIIKSLSISSGSL 253
Query: 252 PGDSSSKKLGSYLIQSQFQSAGNSSALFLTAAAQNLLCLKLAEELGVIISSPWVSWFKXX 311
PG S KKLG+YLI +QFQSAGNSSALFLTAAAQNLLCLKLAEELGV I+SPWV W K
Sbjct: 254 PGGESRKKLGTYLIMTQFQSAGNSSALFLTAAAQNLLCLKLAEELGVKIASPWVFWLKAA 313
Query: 312 XXXXXXXXXXXXXXXYKLYPPEVKDTPDAPAMAAKKLKQLGPVTRNEWIMVGTMLLAVSL 371
YKLYPPE+KDTP+APA+AA+KLK +GPVT+NEW+MVGTMLLAVSL
Sbjct: 314 SLPAFVALLLTPLILYKLYPPELKDTPEAPALAAEKLKNMGPVTKNEWVMVGTMLLAVSL 373
Query: 372 WIFGDALGIPSVVAAMIGXXXXXXXXXXXXXXXXSEKSAWDTLAWFAVLVGMAGQLTNLG 431
W+FG+ +G+ SVVAAM+G +EKSAWDTLAWFAVLVGMA QLTNLG
Sbjct: 374 WVFGEKIGVSSVVAAMLGLSVLLLLGVLDWNDCLNEKSAWDTLAWFAVLVGMASQLTNLG 433
Query: 432 IVTWMSDSVAKCLQSFSLSWPAAFGVLQASYFLIHYLFASQTGHVGALYSAFLAMHXXXX 491
IV+WMS VA+ L++ +LSWPAAFG+LQA+YF +HYLFASQTGHVGALYSAFLAM+
Sbjct: 434 IVSWMSGCVARSLKTMNLSWPAAFGILQAAYFFVHYLFASQTGHVGALYSAFLAMNIASG 493
Query: 492 XXXXXXXXXXXYNTNLFGAITHYSSGQAAVYYGAGYIDLPDVFKMGFTMALVNAIIWGVT 551
YNTNLFGA+THYSSGQAAVYYGAGY+DLPDVFKMGF MA++NA IW V
Sbjct: 494 VPGVLAALALAYNTNLFGALTHYSSGQAAVYYGAGYVDLPDVFKMGFIMAVINATIWTVV 553
Query: 552 GTFWWKFLGLY 562
G WWK LG+Y
Sbjct: 554 GGVWWKILGIY 564
|
|
| TAIR|locus:2173343 DiT2.2 "dicarboxylate transporter 2.2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1615 (573.6 bits), Expect = 6.3e-168, Sum P(2) = 6.3e-168
Identities = 304/472 (64%), Positives = 357/472 (75%)
Query: 91 RGAKLLPFVISISIGLILRFLVPKPVEVSPQAWQLLSIFLSTIAGLVLSPLPVGAWAFLG 150
+GAKL+P IS+SIGLI+RFL+P+P +V+ Q WQLLSIFL TI+GLVL PLPVGAWAF+G
Sbjct: 78 QGAKLIPLAISVSIGLIVRFLIPRPEQVTSQGWQLLSIFLFTISGLVLGPLPVGAWAFIG 137
Query: 151 LTTSIVXXXXXXXXXXXXXXNEVIWLIVISFFFARGFVKTGLGDRIATYFVKWLGKSTLG 210
LT SIV NE+IWLI ISFFFARGF+KTGLGDRIATYFVKWLGKSTLG
Sbjct: 138 LTASIVTKTLPFSTAFAAFTNELIWLIAISFFFARGFIKTGLGDRIATYFVKWLGKSTLG 197
Query: 211 LSYGLTFSEALIAPAMPSTTARAGGVFLPIIKSLSLSAGSKPGDSSSKKLGSYLIQSQFQ 270
LSYGL F E L+ MPST ARAGGVFLP+IKSL++SAGS PGD SS+KLGS+LIQ+Q Q
Sbjct: 198 LSYGLAFCETLMGLIMPSTMARAGGVFLPVIKSLAISAGSYPGDPSSRKLGSFLIQTQLQ 257
Query: 271 SAGNSSALFLTAAAQNLLCLKLAEELGVIISSPWVSWFKXXXXXXXXXXXXXXXXXYKLY 330
+G S A+ LT+AAQNLLCLKLA E+GV+IS+PW++WFK YKLY
Sbjct: 258 CSGASGAILLTSAAQNLLCLKLAREVGVVISNPWITWFKVASVPAFVSLLCTPLIIYKLY 317
Query: 331 PPEVKDTPDAPAMAAKKLKQLGPVTRNEWIMVGTMLLAVSLWIFGDALGIPSVVAAMIGX 390
PPE+K TP+APA AAKKL++LGP+T+NEWIM+G M VSLW+FG+A+GI SVV+AMIG
Sbjct: 318 PPELKHTPEAPAAAAKKLERLGPITKNEWIMLGAMAFTVSLWVFGEAIGIASVVSAMIGL 377
Query: 391 XXXXXXXXXXXXXXXSEKSAWDTLAWFAVLVGMAGQLTNLGIVTWMSDSVAKCLQSFSLS 450
S+KSAWD+L WFAVL+GMAGQLTNLG+V WMSD VAK LQS SL+
Sbjct: 378 STLLLLGVINWDDCLSDKSAWDSLTWFAVLIGMAGQLTNLGVVAWMSDCVAKLLQSLSLT 437
Query: 451 WPAAFGVLQASYFLIHYLFASQTGHVGALYSAFLAMHXXXXXXXXXXXXXXXYNTNLFGA 510
WPA+F +LQA Y LIHYLFASQTGH GALY FLAM +N NL GA
Sbjct: 438 WPASFIILQACYLLIHYLFASQTGHAGALYPPFLAMQIAAGVPGVLAALCLAFNNNLSGA 497
Query: 511 ITHYSSGQAAVYYGAGYIDLPDVFKMGFTMALVNAIIWGVTGTFWWKFLGLY 562
+ HYS G AA+YYGAGY+DL D+F++GF MALV AIIWG G+FWWKFLGLY
Sbjct: 498 LAHYSGGPAALYYGAGYVDLRDMFRVGFVMALVQAIIWGGVGSFWWKFLGLY 549
|
|
| UNIPROTKB|Q41364 DIT1 "Dicarboxylate transporter 1, chloroplastic" [Spinacia oleracea (taxid:3562)] | Back alignment and assigned GO terms |
|---|
Score = 1081 (385.6 bits), Expect = 2.1e-109, P = 2.1e-109
Identities = 216/510 (42%), Positives = 300/510 (58%)
Query: 61 PHIIRPIHSSSQND-------TASTVXXXXXXXXXXXRGAKLLPFVISISIGLILRFLVP 113
PH ++PI +SS + S +GA + P + SI G+I+ F +P
Sbjct: 63 PHKLKPISASSPTNPPPPPAPVPSPAPVSAPAQVQPWQGASIKPLLASILTGVIIWF-IP 121
Query: 114 KPVEVSPQAWQLLSIFLSTIAGLVLSPLPVGAWAFLGLTTSIVXXXXXXXXXXXXXXNEV 173
P VS AWQLL+IFLSTI G++ PLP+GA A +GL S++ + +
Sbjct: 122 TPEGVSRNAWQLLAIFLSTIVGIITQPLPLGAVALMGLGASVLTKTLTFSAAFSAFGDPI 181
Query: 174 IWLIVISFFFARGFVKTGLGDRIATYFVKWLGKSTLGLSYGLTFSEALIAPAMPSTTARA 233
WLI ++FFFARGF+KTGLG+RIA FVK G S+LGL Y L FSEAL+APA+PS +ARA
Sbjct: 182 PWLIALAFFFARGFIKTGLGNRIAYQFVKLFGSSSLGLGYSLVFSEALLAPAIPSVSARA 241
Query: 234 GGVFLPIIKSLSLSAGSKPGDSSSKKLGSYLIQSQFQSAGNSSALFLTAAAQNLLCLKLA 293
GG+FLP++KSL ++ GS GD + +KLG++L+ + FQ++ SS++FLTA A N L L
Sbjct: 242 GGIFLPLVKSLCIACGSNVGDGTERKLGAWLMLTCFQTSVISSSMFLTAMAANPLSATLT 301
Query: 294 -EELGVIISSPWVSWFKXXXXXXXXXXXXXXXXXYKLYPPEVKDTPDAPAMAAKKLKQLG 352
+G I W+ W K Y +YPPE+K +PDAP +A +KL ++G
Sbjct: 302 FNTIGKAIG--WMDWAKAAFVPGLVSLIVVPLLLYVVYPPEIKSSPDAPRLAKEKLDKMG 359
Query: 353 PVTRNEWIMVGTMLLAVSLWIFGDALGIPSVVAAMIGXXXXXXXXXXXXXXXXSEKSAWD 412
P+T+NE IM T+LL V LW+FG LG+ +V AA++G +E AWD
Sbjct: 360 PMTKNESIMAVTLLLTVGLWVFGGKLGVDAVTAAILGLSVLLITGVVTWKECLAESVAWD 419
Query: 413 TLAWFAVLVGMAGQLTNLGIVTWMSDSVAKCLQSFSLSWPAAFGVLQASYFLIHYLFASQ 472
TL WFA L+ MAG L G++TW S++V K + LSW +FGVL YF HY FAS
Sbjct: 420 TLTWFAALIAMAGYLNKYGLITWFSENVVKVVGGLGLSWQMSFGVLVLLYFYSHYFFASG 479
Query: 473 TGHVGALYSAFLAMHXXXXXXXXXXXXXXXYNTNLFGAITHYSSGQAAVYYGAGYIDLPD 532
H+GA+++AFL++ + +NL G +THY G A V+YGA Y+ LP
Sbjct: 480 AAHIGAMFTAFLSVASALGTPPFLAAIVLSFLSNLMGGLTHYGIGSAPVFYGANYVPLPQ 539
Query: 533 VFKMGFTMALVNAIIWGVTGTFWWKFLGLY 562
+ GF +++VN IIW G WWK +GL+
Sbjct: 540 WWGYGFLISIVNLIIWLGVGGLWWKAIGLW 569
|
|
| TAIR|locus:2182270 DiT1 "dicarboxylate transporter 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1046 (373.3 bits), Expect = 1.1e-105, P = 1.1e-105
Identities = 204/473 (43%), Positives = 286/473 (60%)
Query: 91 RGAKLLPFVISISIGLILRFLVPKPVEVSPQAWQLLSIFLSTIAGLVLSPLPVGAWAFLG 150
+GA + P + SI+ GLIL F VP P V+ AWQLL+IFL+TI G++ PLP+GA A +G
Sbjct: 88 QGAAIKPLLASIATGLILWF-VPVPEGVTRNAWQLLAIFLATIVGIITQPLPLGAVALMG 146
Query: 151 LTTSIVXXXXXXXXXXXXXXNEVIWLIVISFFFARGFVKTGLGDRIATYFVKWLGKSTLG 210
L S++ + + WLI ++FFFARGF+KTGLG+R+A FV+ G S+LG
Sbjct: 147 LGASVLTKTLTFAAAFSAFGDPIPWLIALAFFFARGFIKTGLGNRVAYQFVRLFGSSSLG 206
Query: 211 LSYGLTFSEALIAPAMPSTTARAGGVFLPIIKSLSLSAGSKPGDSSSKKLGSYLIQSQFQ 270
L Y L FSEAL+APA+PS +ARAGG+FLP++KSL ++ GS GD + +LGS+L+ + FQ
Sbjct: 207 LGYSLVFSEALLAPAIPSVSARAGGIFLPLVKSLCVACGSNVGDGTEHRLGSWLMLTCFQ 266
Query: 271 SAGNSSALFLTAAAQNLLCLKLAEELGVIISSPWVSWFKXXXXXXXXXXXXXXXXXYKLY 330
++ SS++FLTA A N L LA + + W W K Y +Y
Sbjct: 267 TSVISSSMFLTAMAANPLSANLAFNT-IKQTIGWTDWAKAAIVPGLVSLIVVPFLLYLIY 325
Query: 331 PPEVKDTPDAPAMAAKKLKQLGPVTRNEWIMVGTMLLAVSLWIFGDALGIPSVVAAMIGX 390
PP VK +PDAP +A +KL ++GP+++NE IM T+ L V LWIFG LG+ +V AA++G
Sbjct: 326 PPTVKSSPDAPKLAQEKLDKMGPMSKNELIMAATLFLTVGLWIFGAKLGVDAVTAAILGL 385
Query: 391 XXXXXXXXXXXXXXXSEKSAWDTLAWFAVLVGMAGQLTNLGIVTWMSDSVAKCLQSFSLS 450
+E AWDTL WFA L+ MAG L G++ W S +V K + LS
Sbjct: 386 SVLLVTGVVTWKECLAESVAWDTLTWFAALIAMAGYLNKYGLIEWFSQTVVKFVGGLGLS 445
Query: 451 WPAAFGVLQASYFLIHYLFASQTGHVGALYSAFLAMHXXXXXXXXXXXXXXXYNTNLFGA 510
W +FG+L YF HY FAS H+GA+++AFL++ + +NL G
Sbjct: 446 WQLSFGILVLLYFYTHYFFASGAAHIGAMFTAFLSVSTALGTPPYFAALVLAFLSNLMGG 505
Query: 511 ITHYSSGQAAVYYGAGYIDLPDVFKMGFTMALVNAIIW-GVTGTFWWKFLGLY 562
+THY G A ++YGA Y+ L + GF +++VN +IW GV G WWKF+GL+
Sbjct: 506 LTHYGIGSAPIFYGANYVPLAKWWGYGFLISIVNILIWLGVGGA-WWKFIGLW 557
|
|
| TIGR_CMR|CHY_0060 CHY_0060 "anion transporter family protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
|---|
Score = 890 (318.4 bits), Expect = 3.6e-89, P = 3.6e-89
Identities = 183/470 (38%), Positives = 268/470 (57%)
Query: 94 KLLPFVISISIGLILRFLVPKPVEVSPQAWQLLSIFLSTIAGLVLSPLPVGAWAFLGLTT 153
K + +++ ++GL + F P P + P+AW LL+IF++TI G +L PLP+GA AF+ +T
Sbjct: 3 KKIRALLTCAVGLAIWFS-PIPTGLDPKAWHLLAIFVATIIGFILQPLPIGAIAFISVTL 61
Query: 154 SIVXXXXXXXXXXXXXXNEVIWLIVISFFFARGFVKTGLGDRIATYFVKWLGKSTLGLSY 213
S + N IWLIV +F FA GFVKTGLG RIA Y ++ LG STL L Y
Sbjct: 62 SALTGILDAKAALAGFANSTIWLIVSAFIFAIGFVKTGLGLRIAYYLIRLLGDSTLKLGY 121
Query: 214 GLTFSEALIAPAMPSTTARAGGVFLPIIKSLSLSAGSKPGDSSSKKLGSYLIQSQFQSAG 273
L S+ +I+PA PS TARAGGV PI++SL+ + GSKPG+S +K+G+YL+Q+ +Q
Sbjct: 122 TLVLSDLIISPATPSNTARAGGVLFPIVRSLAEAFGSKPGESP-RKVGAYLMQTAYQGNA 180
Query: 274 NSSALFLTAAAQN-LLCLKLAEELGVIISSPWVSWFKXXXXXXXXXXXXXXXXXYKLYPP 332
+SA+FLT+ A N L+ L + L + I+ W W K YK+YPP
Sbjct: 181 ITSAMFLTSMAGNPLIALLALKTLKIDIT--WNLWAKAAIVPGIISILVIPYLLYKIYPP 238
Query: 333 EVKDTPDAPAMAAKKLKQLGPVTRNEWIMVGTMLLAVSLWIFGDALGIPSVVAAMIGXXX 392
E+K TP+A +AAK+L ++GP+ E ++ + A+ LW I + + AM+G
Sbjct: 239 EIKKTPEAKEIAAKELVKMGPMKFEEKVLAIVFIGALILWATSQYTKIDATIVAMLGVSA 298
Query: 393 XXXXXXXXXXXXXSEKSAWDTLAWFAVLVGMAGQLTNLGIVTWMSDSVAKCLQSFSLSWP 452
+EK AWDTL W VLV +AG L+ LG + W + +V + S W
Sbjct: 299 MLVAKVIDWKDVLAEKGAWDTLVWMGVLVALAGNLSELGFIPWFAKNVGNMISGISWFW- 357
Query: 453 AAFGVLQASYFLIHYLFASQTGHVGALYSAFLAMHXXXXXXXXXXXXXXXYNTNLFGAIT 512
AF +L Y HY FAS T H+ A+Y+AF ++ + +NL ++T
Sbjct: 358 -AFVILLVVYLYAHYGFASLTAHITAMYAAFASVAVAAGAPPYLVALSLAFMSNLCMSLT 416
Query: 513 HYSSGQAAVYYGAGYIDLPDVFKMGFTMALVNAIIWGVTGTFWWKFLGLY 562
HY++G + +Y+GAGY+D +K+GF +++VN IW G WWK LGL+
Sbjct: 417 HYAAGPSPIYFGAGYVDQGTWWKLGFIVSIVNLFIWVGIGAVWWKALGLW 466
|
|
| UNIPROTKB|P0AE74 citT "citrate:succinate antiporter" [Escherichia coli K-12 (taxid:83333)] | Back alignment and assigned GO terms |
|---|
Score = 528 (190.9 bits), Expect = 6.9e-61, Sum P(2) = 6.9e-61
Identities = 120/391 (30%), Positives = 192/391 (49%)
Query: 174 IWLIVISFFFARGFVKTGLGDRIATYFVKWLGKSTLGLSYGLTFSEALIAPAMPSTTARA 233
+WL+ +F FA G+ +GLG RIA + VK++GK TL L Y + + L+AP PS TAR
Sbjct: 104 VWLVFGAFIFALGYEVSGLGRRIALFLVKFMGKRTLTLGYAIVIIDILLAPFTPSNTART 163
Query: 234 GGVFLPIIKSLSLSAGSKPGDSSSKKLGSYLIQSQFQSAGNSSALFLTAAAQNLLCLKLA 293
GG P+IK+L S P D S++++G YL+ S SS++F+T AA N+L L+
Sbjct: 164 GGTVFPVIKNLPPLFKSFPNDPSARRIGGYLMWMMVISTSLSSSMFVTGAAPNVLGLEFV 223
Query: 294 EEL-GVIISSPWVSWFKXXXXXXXXXXXXXXXXXYKLYPPEVKDTPDAPAMAAKKLKQLG 352
++ G+ IS W+ WF Y LY PE+ + + A +LK +G
Sbjct: 224 SKIAGIQIS--WLQWFLCFLPVGVILLIIAPWLSYVLYKPEITHSEEVATWAGDELKTMG 281
Query: 353 PVTRNEWIMVGTMLLAVSLWIFGDALGIPSVVAAMIGXXXXXXXXXXXXXXXXSEKSAWD 412
+TR EW ++G +LL++ LW+FG + I + ++ SAW+
Sbjct: 282 ALTRREWTLIGLVLLSLGLWVFGSEV-INATAVGLLAVSLMLALHVVPWKDITRYNSAWN 340
Query: 413 TLAWFAVLVGMAGQLTNLGIVTWMSDSVAKCLQSFSLSWPAAFGVLQASYFLIHYLFASQ 472
TL A LV MA LT G + W + +++ L+ FS + A VL ++ HYLFAS
Sbjct: 341 TLVNLATLVVMANGLTRSGFIDWFAGTMSTHLEGFSPN--ATVIVLVLVFYFAHYLFASL 398
Query: 473 TGHVGALYSAFLAMHXXXXXXXXXXX-XXXXYNTNLFGAITHYSSGQAAVYYGAGYIDLP 531
+ H + LA+ + + G +T Y++G + YG GY+
Sbjct: 399 SAHTATMLPVILAVGKGIPGVPMEQLCILLVLSIGIMGCLTPYATGPGVIIYGCGYVKSK 458
Query: 532 DVFKMGFTMALVNAIIWGVTGTFWWKFLGLY 562
D +++G ++ + + G W L ++
Sbjct: 459 DYWRLGAIFGVIYISMLLLVG---WPILAMW 486
|
|
| UNIPROTKB|P39414 ttdT [Escherichia coli K-12 (taxid:83333)] | Back alignment and assigned GO terms |
|---|
Score = 522 (188.8 bits), Expect = 2.9e-56, Sum P(2) = 2.9e-56
Identities = 130/390 (33%), Positives = 187/390 (47%)
Query: 171 NEVIWLIVISFFFARGFVKTGLGDRIATYFVKWLGKSTLGLSYGLTFSEALIAPAMPSTT 230
N VIWLI +F F G+ KTGLG RIA VK +G TL L Y + FSE ++AP PS +
Sbjct: 100 NSVIWLIFAAFMFGTGYEKTGLGRRIALILVKKMGHRTLFLGYAVMFSELILAPVTPSNS 159
Query: 231 ARAGGVFLPIIKSLSLSAGSKPGDSSSKKLGSYLIQSQFQSAGNSSALFLTAAAQNLLCL 290
AR G+ PII++L S+P DSSS+ +GSY++ + +SA+FLTA A NLL +
Sbjct: 160 ARGAGIIYPIIRNLPPLYQSQPNDSSSRSIGSYIMWMGIVADCVTSAIFLTAMAPNLLLI 219
Query: 291 KLAEELGVIISSPWVSWFKXXXXXXXXXXXXXXXXXYKLYPPEVKDTPDAPAMAAKKLKQ 350
L + S W WF Y LYPP +K P A +L+
Sbjct: 220 GLMKSASHATLS-WGDWFLGMLPLSILLVLLVPWLAYVLYPPVLKSGDQVPRWAETELQA 278
Query: 351 LGPVTRNEWIMVGTMLLAVSLWIFGDALGIPSVVAAMIGXXXXXXXXXXXXXX---XXSE 407
+GP+ E M+G M+ A+ LWIFG + AAM+G S
Sbjct: 279 MGPLCSREKRMLGLMVGALVLWIFGGDY----IDAAMVGYSVVALMLLLRIISWDDIVSN 334
Query: 408 KSAWDTLAWFAVLVGMAGQLTNLGIVTWMSDSVAKCLQSFSLSWPAAFGV-LQASYFLIH 466
K+AW+ W A L+ +A L N G ++W +A L +S P V L ++L+
Sbjct: 335 KAAWNVFFWLASLITLATGLNNTGFISWFGKLLAGSLSGYS---PTMVMVALIVVFYLLR 391
Query: 467 YLFASQTGHVGALYSAFLAMHXXXXXXXXXXXXXXXYNTNLFGAI-THYSSGQAAVYYGA 525
Y FAS T + AL +A G+I T Y++G + +YYG+
Sbjct: 392 YFFASATAYTSALAPMMIAAALAMPEIPLPVFCLMVGAAIGLGSILTPYATGPSPIYYGS 451
Query: 526 GYIDLPDVFKMGFTMALVNAIIWGVTGTFW 555
GY+ D +++G L+ ++ +TG W
Sbjct: 452 GYLPTADYWRLGAIFGLIFLVLLVITGLLW 481
|
|
| UNIPROTKB|P75763 ybhI "YbhI DASS Transporter" [Escherichia coli K-12 (taxid:83333)] | Back alignment and assigned GO terms |
|---|
Score = 577 (208.2 bits), Expect = 5.3e-56, P = 5.3e-56
Identities = 130/471 (27%), Positives = 221/471 (46%)
Query: 95 LLPFVISISIGLILRFLVPKPVEVSPQAWQLLSIFLSTIAGLVLSPLPVGAWAFLGLTTS 154
L ++ ++I I+ F+ P P +S AW L I+L+ I GLV+ P P + + S
Sbjct: 6 LWKLILILAIPCIIGFM-PAPAGLSELAWVLFGIYLAAIVGLVIKPFPEPVVLLIAVAAS 64
Query: 155 IVXX------XXXXXXXXXXXXNEVIWLIVISFFFARGFVKTGLGDRIATYFVKWLGKST 208
+V + WL+ +F + FV TGLG RIA + +G +T
Sbjct: 65 MVVVGNLSDGAFKTTAVLSGYSSGTTWLVFSAFTLSAAFVTTGLGKRIAYLLIGKIGNTT 124
Query: 209 LGLSYGLTFSEALIAPAMPSTTARAGGVFLPIIKSLSLSAGSKPGDSSSKKLGSYLIQSQ 268
LGL Y F + ++APA PS TARAGG+ LPII S++++ GS+P + S +++G YL+ S
Sbjct: 125 LGLGYVTVFLDLVLAPATPSNTARAGGIVLPIINSVAVALGSEP-EKSPRRVGHYLMMSI 183
Query: 269 FQSAGNSSALFLTAAAQNLLCLKLAEELGVIISSPWVSWFKXXXXXXXXXXXXXXXXXYK 328
+ +S +F TA A N+L LK+ ++ + + W W Y
Sbjct: 184 YMVTKTTSYMFFTAMAGNILALKMINDI-LHLQISWGGWALAAGLPGIIMLLVTPLVIYT 242
Query: 329 LYPPEVKDTPDAPAMAAKKLKQLGPVTRNEWIMVGTMLLAVSLWIFGDALGIPSVVAAMI 388
+YPPE+K D +A L +LGP+ E +++G +LA+ WIF +LG+ A++
Sbjct: 243 MYPPEIKKV-DNKTIAKAGLAELGPMKIREKMLLGVFVLALLGWIFSKSLGVDESTVAIV 301
Query: 389 GXXXXXXXXXXXXXXXXSEKSAWDTLAWFAVLVGMAGQLTNLGIVTWMSDSVAKCLQSFS 448
K W+TL W+ ++G++ L+ + W+++ V K +F
Sbjct: 302 VMATMLLLGIVTWEDVVKNKGGWNTLIWYGGIIGLSSLLSKVKFFEWLAE-VFKNNLAFD 360
Query: 449 LSWPAAFGVLQASYFLIHYLFASQTGHVGALYSAFLAMHXXXXXXXXXXXXXXXYNTNLF 508
AF V+ ++ Y FAS + ++ A+ F + ++ +
Sbjct: 361 GHGNVAFFVIIFLSIIVRYFFASGSAYIVAMLPVFAMLANVSGAPLMLTALALLFSNSYG 420
Query: 509 GAITHYSSGQAAVYYGAGYIDLPDVFKMGFTMALVNAIIWGVTGTFWWKFL 559
G +THY V +G GY D+ + +G + ++ ++ G +WW L
Sbjct: 421 GMVTHYGGAAGPVIFGVGYNDIKSWWLVGAVLTILTFLVHITLGVWWWNML 471
|
|
| TIGR_CMR|BA_2211 BA_2211 "sodium/solute symporter family protein" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
|---|
Score = 157 (60.3 bits), Expect = 3.1e-08, P = 3.1e-08
Identities = 75/348 (21%), Positives = 139/348 (39%)
Query: 98 FVISISIGLILRFLVPKPVEVSPQA-WQLLSIFLSTIAGLVLSPLPVGAWAFLG-LTTSI 155
+V+ +++ LI+ ++ P ++ +A W L F S I + + A+ LG + I
Sbjct: 23 WVLPVALILIVEIVLLLPSSLTMEAKWSLFG-FCSAIILWTTTTIN-SAYIALGSVLFLI 80
Query: 156 VXXXXXXXXXXXXXXNEVIWLIVISFFFARGFVKTGLGDRIATYFVKWLGKSTLGLSYGL 215
+ ++VIWL++ SF R TGL +++ TYFV ++ GL + L
Sbjct: 81 ISGTAKQDLLFDSLASDVIWLMIGSFILGRALQITGLAEKM-TYFVVNRARNISGLCWIL 139
Query: 216 TFSEALIAPAMPSTTARAGGVFLPIIKSLSLSAGSKPGDSSSKKLGSYLIQSQFQSAGNS 275
T ++A +PST+ RA V LP+ +++ GS+ +K L ++ S
Sbjct: 140 TMIIQILAFFIPSTSGRAA-VVLPVFQAICKEIGSR---RIAKALA--ILMPTVILVSTS 193
Query: 276 SALFLTAAAQNLLCLKLAEELGV--IISSPWVSWFKXXXXXXXXXXXXXXXXXYKLYPPE 333
S + A +L+ L + E I W+ W + L E
Sbjct: 194 STII--GAGSHLIALDMLNEFNNKNITFVEWLIWGLPFGIIMSFISCRVILVLF-LDKEE 250
Query: 334 VKDTPDAPAMAAKKLKQLGPVTRNEWIMVGTMLLAVSLWIFGDALGIPSVVAAMIGXXXX 393
VK + KK+K ++RNE + ++ V+ W+ G+ +IG
Sbjct: 251 VKTK-----LQQKKVKF--ELSRNEKYTISILIAMVAFWLTEWLHGLEIATVTIIGVFLL 303
Query: 394 XXXXXXXXXXXXSEKS-AWDTLAWFAVLVGMAGQLTNLGIVTWMSDSV 440
S K +W+ + + + + L G W+ ++
Sbjct: 304 TLPKLGVMQWKESLKGVSWNLILFVGAAIALGKSLMESGAAQWIMQNL 351
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q8L7Z9 | DIT2_SPIOL | No assigned EC number | 0.8174 | 0.8380 | 0.8351 | N/A | no |
| Q9FMF7 | DIT21_ARATH | No assigned EC number | 0.7708 | 0.9768 | 0.9751 | yes | no |
| Q57048 | Y020_HAEIN | No assigned EC number | 0.3592 | 0.8202 | 0.9624 | yes | no |
| O34726 | YFLS_BACSU | No assigned EC number | 0.4914 | 0.8256 | 0.9707 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 562 | |||
| pfam00939 | 471 | pfam00939, Na_sulph_symp, Sodium:sulfate symporter | 1e-143 | |
| TIGR00785 | 444 | TIGR00785, dass, anion transporter | 1e-109 | |
| COG0471 | 461 | COG0471, CitT, Di- and tricarboxylate transporters | 3e-72 | |
| cd00625 | 396 | cd00625, ArsB_NhaD_permease, Anion permease ArsB/N | 2e-20 | |
| cd01115 | 382 | cd01115, SLC13_permease, Permease SLC13 (solute ca | 3e-07 | |
| COG1055 | 424 | COG1055, ArsB, Na+/H+ antiporter NhaD and related | 2e-04 |
| >gnl|CDD|216206 pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region | Back alignment and domain information |
|---|
Score = 422 bits (1087), Expect = e-143
Identities = 211/475 (44%), Positives = 304/475 (64%), Gaps = 10/475 (2%)
Query: 92 GAKLLPFVISISIGLILRFLVPKPVEVSPQAWQLLSIFLSTIAGLVLSPLPVGAWAFLGL 151
+ + +++ LI+ + +P P +S +AW L +IF++TI GL+ P+P+G A + L
Sbjct: 1 KKLIWKLLALLAVLLII-WFLPAPDGLSSKAWHLFAIFIATIVGLITEPVPLGVIALMAL 59
Query: 152 TTSIV---TRTLAFPTAFAAFTNEVIWLIVISFFFARGFVKTGLGDRIATYFVKWLGKST 208
+ S V T + A A + F+N WL+ +FF A GF KTGLG RIA + VK +GKST
Sbjct: 60 SLSAVLTGTLSKALSWALSGFSNPTTWLVFGAFFIAAGFEKTGLGKRIALFLVKAMGKST 119
Query: 209 LGLSYGLTFSEALIAPAMPSTTARAGGVFLPIIKSLSLSAGSKPGDSSSKKLGSYLIQSQ 268
LGL YGL FS+ L+APA+PS TARAGG+ PII SL + GS P S +K+G+YL+ +
Sbjct: 120 LGLGYGLVFSDLLLAPAIPSNTARAGGIVFPIIMSLPPAFGSTPEKGSPRKIGAYLMWTV 179
Query: 269 FQSAGNSSALFLTAAAQNLLCLKLAEE-LGVIISSPWVSWFKAACVPALVALLATPLILY 327
+QS +SA+FLTA A N L L LA + LG IS W SWF AA P ++ LL PL+LY
Sbjct: 180 YQSTSITSAMFLTAMAPNPLALGLANKILGNEIS--WASWFLAAIPPGVILLLLVPLLLY 237
Query: 328 KLYPPEVKDTPDAPAMAAKKLKQLGPVTRNEWIMVGTMLLAVSLWIFGDALGIPSVVAAM 387
KLYPPE+K +P+A A +LK++GP+T E ++G LL + LWIFG +LGI + A+
Sbjct: 238 KLYPPEIKSSPEAKRWAKTELKEMGPMTFREKALLGLFLLLLLLWIFGGSLGIDATTVAI 297
Query: 388 IGLSILLLLGVLDWDDCLSEKSAWDTLAWFAVLVGMAGQLTNLGIVTWMSDSVAKCLQSF 447
IGLS++LLL ++DW D + K+AW+TL WF L+ +AG L N G + W+ +++ L
Sbjct: 298 IGLSLMLLLRIVDWKDIVKNKTAWNTLIWFGGLIALAGGLNNSGFIEWLGNTLVTSLSGL 357
Query: 448 SLSWPAAFGVLQASYFLIHYLFASQTGHVGALYSAFLAMHLAA-GVPGVLAALALAYNTN 506
S AF V+ ++L HY FAS T H A+ FLA+ A G P +LAAL L + ++
Sbjct: 358 --SPAMAFIVILLLFYLSHYFFASNTAHTAAMLPIFLAVAQALPGAPPLLAALLLGFASS 415
Query: 507 LFGAITHYSSGQAAVYYGAGYIDLPDVFKMGFTMALVNAIIWGVTGTFWWKFLGL 561
L G +T Y +G A +Y+G+GY+ + D +++GF ++++ IIW + G WWK LGL
Sbjct: 416 LGGFLTPYGTGPAPIYFGSGYVPVKDWWRIGFILSIIGLIIWLLVGALWWKPLGL 470
|
There are also some members in this family that do not match the Prosite motif, and belong to the subfamily SODIT1. Length = 471 |
| >gnl|CDD|233126 TIGR00785, dass, anion transporter | Back alignment and domain information |
|---|
Score = 332 bits (854), Expect = e-109
Identities = 176/448 (39%), Positives = 254/448 (56%), Gaps = 8/448 (1%)
Query: 113 PKPVEVSPQAWQLLSIFLSTIAGLVLSPLPVGAWAFLGLTTSIV----TRTLAFPTAFAA 168
P P ++ AW LL+IF++ I G +L PLP+ A L + V F A +
Sbjct: 1 PVPDGLNSGAWLLLAIFVAAIVGWILEPLPLPVTALLAIPIIAVLLGVLSAFKFKNALSG 60
Query: 169 FTNEVIWLIVISFFFARGFVKTGLGDRIATYFVKWLGKSTLGLSYGLTFSEALIAPAMPS 228
F + IWL +F A VKTGLG RIA V +G +TLGL Y L F E L+AP PS
Sbjct: 61 FADPTIWLFFGAFILATALVKTGLGKRIAYKLVGKMGGTTLGLGYFLVFLETLLAPMWPS 120
Query: 229 TTARAGGVFLPIIKSLSLSAGSKPGDSSSKKLGSYLIQSQFQSAGNSSALFLTAAAQNLL 288
TARAGG+ LPIIKSL GSKP + S +K+G YL+ SA S+ FLT +A N L
Sbjct: 121 NTARAGGILLPIIKSLLPLLGSKP-EKSPRKIGKYLMLGIAYSASIGSSGFLTGSAPNAL 179
Query: 289 CLKLAEELGVIISSPWVSWFKAACVPALVALLATPLILYKLYPPEVKDTPDAPAMAAKKL 348
+ ++ I W WF A ++ LL PL+LY L+PPE+K + A ++L
Sbjct: 180 AAGILSKILGI-QISWGDWFLAGLPLGIILLLLVPLLLYVLFPPELKLKDEVDLWAKEEL 238
Query: 349 KQLGPVTRNEWIMVGTMLLAVSLWIFGDALGIPSVVAAMIGLSILLLLGVLDWDDCLSEK 408
+++GP++ E ++G LLA+ LWIFG +LGI + V A++ + ++L LG++ W D K
Sbjct: 239 EEMGPMSFREKALLGIFLLALLLWIFGGSLGINASVVALLAVVLMLFLGIVTWKDIQKNK 298
Query: 409 SAWDTLAWFAVLVGMAGQLTNLGIVTWMSDSVAKCLQSFSLSWPAAFGVLQASYFLIHYL 468
AW+TL F L+G+AG L G + W S+ + L LS A VL +++I Y
Sbjct: 299 VAWNTLILFGGLIGLAGGLKKSGFIKWFSEKLVGILD--GLSPTIAVLVLVVLFYIILYF 356
Query: 469 FASQTGHVGALYSAFLAMHLAAGVPGVLAALALAYNTNLFGAITHYSSGQAAVYYGAGYI 528
FAS T H AL F ++ A G+P L ALALA + +L G +T Y++ A+ YG+GY+
Sbjct: 357 FASNTAHTAALVPIFFSVASAQGIPLELLALALALSASLMGFLTPYATPPNAIAYGSGYV 416
Query: 529 DLPDVFKMGFTMALVNAIIWGVTGTFWW 556
+ D++++G + +V I+ + GT WW
Sbjct: 417 KIKDMWRVGAIIGIVGLIVLLLVGTLWW 444
|
The Divalent Anion:Na+ Symporter (DASS) Family (TC 2.A.47) Functionally characterized proteins of the DASS family transport (1) organic di- and tricarboxylates of the Krebs Cycle as well as dicarboxylate amino acid, (2) inorganic sulfate and (3) phosphate. The animal NaDC-1 cotransport 3 Na+ with each dicarboxylate. Protonated tricarboxylates are also cotransported with 3Na+ [Transport and binding proteins, Anions, Transport and binding proteins, Cations and iron carrying compounds]. Length = 444 |
| >gnl|CDD|223547 COG0471, CitT, Di- and tricarboxylate transporters [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 237 bits (608), Expect = 3e-72
Identities = 158/476 (33%), Positives = 242/476 (50%), Gaps = 24/476 (5%)
Query: 93 AKLLPFVISISIGLILRFLVPKPVEVSPQAWQLLSIFLSTIAGLVLSPLPVGAWAFLGLT 152
K L + + + ++ L P P +S AW L +I ++ I +L +P+ A A L +
Sbjct: 3 VKRLDLLALLVLLALV-LLGPVPFGLSGFAW-LFAILVAAIILWILEAIPLFALAILVIV 60
Query: 153 ----TSIVTRTLAFPTAFAAFTNEVIWLIVISFFFARGFVKTGLGDRIATYFVKWLGKST 208
+ + A A + F N IWLI F ++G KTGLG R+A + +++ G +
Sbjct: 61 LLVLSGFILAISASKLALSGFANSTIWLIFGLFLLSKGLEKTGLGKRLALHLLRFFGTTP 120
Query: 209 LGLSYGLTFSEALIAPAMPSTTARAGGVFLPIIKSLSLSAGSKPGDSSSKKLGSYLIQSQ 268
GL+ GL ++PA PS TA GG+ LP+I SLS GS P D K+G LI
Sbjct: 121 RGLALGLVLLTLFLSPAFPSNTA-TGGIMLPLILSLSPLLGSPPRD----KIGKRLILGI 175
Query: 269 FQSAGNSSALFLTAAAQNLLCLKLAEELGVIISSPWVSWFKAACVPALVALLATPLILYK 328
+A SAL N++ L + + W WF A ++ LL L+LYK
Sbjct: 176 ALAANIGSALTPIGNPPNIIAAGLLNPISL----SWGEWFLAMLPLGILLLLLLLLLLYK 231
Query: 329 LYPP-EVKDTPDAPAMAAKKLKQLGPVTRNEWIMVGTMLLAVSLWIFGDALG-IPSVVAA 386
L+PP E+K+TP+ P A ++LK+LGP+ R+E +++G LL + LWIFG LG I + + A
Sbjct: 232 LFPPREIKETPNNPVAAKRELKELGPLLRDEKLLLGIFLLLLLLWIFGKLLGKIDATLIA 291
Query: 387 MIGLSILLLLGVLDWDDCLSEKSAWDTLAWFAVLVGMAGQLTNLGIVTWMSDSVAKCLQS 446
+I +++LLL GVL W + + +K W TL F L+ + L+ G + W++ +A L
Sbjct: 292 LIPVALLLLAGVLTWKE-VYKKIDWGTLILFGGLIALGSALSKTGAIAWIAGLLAGSLGG 350
Query: 447 FSLSWPAAFGVLQASYFLIHYLFASQTGHVGALYSAFLAMHLAAGVPGV-LAALALAYNT 505
P A +L L+ LFAS T A+ + LA+ + G L L L +
Sbjct: 351 L---GPFAILLLLLLLTLVLTLFASNTATAIAMVPIAI--ALASALGGAPLLLLMLVAVS 405
Query: 506 NLFGAITHYSSGQAAVYYGAGYIDLPDVFKMGFTMALVNAIIWGVTGTFWWKFLGL 561
G +T S + G+GY+ D +K+GF +++V I+ V G WW LGL
Sbjct: 406 ASGGFLTPVGSPPNPIALGSGYVKFKDWWKVGFILSIVLIIVLLVIGLLWWPVLGL 461
|
Length = 461 |
| >gnl|CDD|238344 cd00625, ArsB_NhaD_permease, Anion permease ArsB/NhaD | Back alignment and domain information |
|---|
Score = 93.1 bits (232), Expect = 2e-20
Identities = 91/422 (21%), Positives = 158/422 (37%), Gaps = 38/422 (9%)
Query: 133 IAGLVLSPLPVGAWAFLGLTTSIVTRTLAFPTAFAAFTNEVIWLIVISFFFARGFVKTGL 192
+ LP A LG ++ ++ A +A E I L+ + +TGL
Sbjct: 1 YVLIRPEKLPRAVVALLGAVLLVLLGVVSPKEALSAIDWETILLLFGMMILSAALEETGL 60
Query: 193 GDRIATYFVKWLGKSTLGLSYGLTFSEALIAPAMPSTTARAGGVFLPIIKSLSLSAGSKP 252
DR+A + S L A S A A + ++ L S P
Sbjct: 61 FDRLAAKLARASKGS--RRLLLLLMLLTAALSAFFSNDATAVLLTPIVLALLRKLGLSPP 118
Query: 253 GDSSSKKLGSYLIQSQFQSAGNSSALFLTAAAQNLLCLKLAEELGVIISSPWVSWFKAAC 312
L+ + +A A NL+ L+ + F A
Sbjct: 119 ---------VPLLLALAFAANIGGAATPIGNPPNLIIASLSG-----LGFLDFLAFMA-- 162
Query: 313 VPALVALLATPLILYKLYPPEVK-DTPDAPAMAAKKLKQLGPVTRNEWIMVGTMLLAVSL 371
PAL LL +LY L+ ++ D + A+ L + + + + +LL V L
Sbjct: 163 PPALGLLLLLLGLLYLLFRKKLLLPDEDKLTVLAEPLPARPLLKKFLLLALLLLLLFVLL 222
Query: 372 WIFGDALGIPSVVAAMIGLSILLLLGVLDWDDCLSEKSAWDTLAWFAVLVGMAGQLTNLG 431
+ F LG+ +++ A++ L LLL+ LD ++ L + W TL +FA L + G L + G
Sbjct: 223 FFFLIPLGLIALLGALLLL--LLLVRGLDPEEVL-KSVDWGTLLFFAGLFVLVGALESTG 279
Query: 432 IVTWMSDSVAKCLQSFSLSWPAAFGVLQASYFLIHYLFASQ-TGHVGALYSAFLAMHLAA 490
++ W+++ + + P +L + S +V + A L A+
Sbjct: 280 LLEWLAELLV-----ALVGLPPLAALL---LIGLLSALLSNFISNVPTV--ALLLPIAAS 329
Query: 491 GVPGVLAALALAYNTNLFGAITHYSSGQAAVYYGAGYIDLPDV-----FKMGFTMALVNA 545
P A LALA + L G +T S + GA + K+G + L++
Sbjct: 330 LAPPEPAWLALALGSTLGGNLTLIGSLANLIPLGAAENAGVGISFGEFLKVGLPLTLLSL 389
Query: 546 II 547
++
Sbjct: 390 VV 391
|
These permeases have been shown to translocate sodium, arsenate, antimonite, sulfate and organic anions across biological membranes in all three kingdoms of life. A typical anion permease contains 8-13 transmembrane helices and can function either independently as a chemiosmotic transporter or as a channel-forming subunit of an ATP-driven anion pump. Length = 396 |
| >gnl|CDD|238535 cd01115, SLC13_permease, Permease SLC13 (solute carrier 13) | Back alignment and domain information |
|---|
Score = 52.2 bits (126), Expect = 3e-07
Identities = 82/433 (18%), Positives = 149/433 (34%), Gaps = 53/433 (12%)
Query: 126 LSIFLSTIAGLVLSPLPVGAWAFLGLTTSIVTRTLAFPTAFAAFTNEVIWLIVISFFFAR 185
L+I + V LP+ A L ++ + AF+ F++ + L + F
Sbjct: 1 LAILVFAAVLFVTEALPLDVTALLVPVLLVLLGVVPPKEAFSGFSDPAVILFLAGFILGA 60
Query: 186 GFVKTGLGDRIATYFVKWLGKSTLGLSYGLTFSEALIAPAMPSTTARAGGVFLPIIKSLS 245
+TGL RIAT +K GK L L A ++ M +T A + LP+ L+
Sbjct: 61 ALTRTGLAKRIATKLLKRAGKGERRLLLLLMLVTAFLSAFMSNTATVA--IMLPVALGLA 118
Query: 246 LSAGSKPGDSSSKKLGSYLIQSQFQSAGNSSALFLTAAAQNLLCLKLAEELGVIISSPWV 305
P S L+ +A L L NL+ E LG
Sbjct: 119 AKLDISP---------SRLLMPLAFAASIGGMLTLIGTPPNLVASGYLESLG----GQGF 165
Query: 306 SWFKAACVPALVALLATPLILYKLYPPEVKDTPDAPAMAAKKLKQLGPVTRNEWIMVGTM 365
S+F+ + + ++ + + + V +
Sbjct: 166 SFFEFTPIGLPLLIIGLLYLWFIFR-----------------------------LAVLII 196
Query: 366 LLAVSLWIFGDALGIPSVVAAMIGLSILLLLGVLDWDDCLSEKSAWDTLAWFAVLVGMAG 425
+ + + +P VA IG +L+ GVL + + W + FA + +
Sbjct: 197 TIVLLAALAAITGLLPVSVAIAIGAIVLVFGGVLLTKEDY-KSIDWGIIFLFAGGIPLGK 255
Query: 426 QLTNLGIVTWMSDSVAKCLQSFSLSWPAAFGVLQASYFLIHYL--FASQTGHVGALYSAF 483
L + G +++++ L F +L L L F S T L
Sbjct: 256 ALESSGAAALIAEALISLLGGLP-----PFAILLLLCLLTLVLTNFISNTATAVLLAPIA 310
Query: 484 LAMHLAAGVPGVLAALALAYNTNLFGAITHYSSGQAAVYYGAGYIDLPDVFKMGFTMALV 543
L++ L+ G+P LA+A + + + A+ G G D K+G ++++
Sbjct: 311 LSIALSLGLPPEALLLAVAIGASC-AFMLPVGTPPNAIVLGPGGYKFSDFAKVGLPLSIL 369
Query: 544 NAIIWGVTGTFWW 556
+ ++ W
Sbjct: 370 SLVVSVTMIPLIW 382
|
The sodium/dicarboxylate cotransporter NaDC-1 has been shown to translocate Krebs cycle intermediates such as succinate, citrate, and alpha-ketoglutarate across plasma membranes rabbit, human, and rat kidney. It is related to renal and intestinal Na+/sulfate cotransporters and a few putative bacterial permeases. The SLC13-type proteins belong to the ArsB/NhaD superfamily of permeases that translocate sodium and various anions across biological membranes in all three kingdoms of life. A typical ArsB/NhaD permease is composed of 8-13 transmembrane helices. Length = 382 |
| >gnl|CDD|223983 COG1055, ArsB, Na+/H+ antiporter NhaD and related arsenite permeases [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 2e-04
Identities = 69/329 (20%), Positives = 130/329 (39%), Gaps = 36/329 (10%)
Query: 125 LLSIFLSTIAGLVLSP--LPVGAWAFLGLTTSIVTRTLAFPTAFAAFTN--EVIWLIVIS 180
L++F+ T+ +++ P LP A LG ++ + A VI L++
Sbjct: 6 ALALFIFTLVYVLIRPRKLPRAWAALLGALLALFLGIVTPEDALVVIGIDWNVILLLLGM 65
Query: 181 FFFARGFVKTGLGDRIATYFVKWLGKSTLGLSYGLTFSEALIAPAMPSTTARAGGVFLPI 240
++G + +A VK S L L L AL++ + + T + PI
Sbjct: 66 MIIVLLLDESGFFEWLAIKMVKRSKGSGLKLLLLLVLLGALLSAFLDNDTTAL--LLTPI 123
Query: 241 IKSLSLSAGSKPGDSSSKKLGSYLIQSQFQSAGNSSALFLTAAAQNLLCLKLAEELGVII 300
+ +++ + G P +LI F A N++ +
Sbjct: 124 VLAVARALGVNPV--------PFLIAEVF-IANIGGLATPVGDPPNII-------IASAA 167
Query: 301 SSPWVSWFKAACVPALVALLATPLILYKLY-----PPEVKDTPDAPAMAAKKLKQLGPVT 355
+ + P+L++L+AT ++LY L+ P D A + + L ++
Sbjct: 168 GISFNDFLANMFPPSLISLIATLVVLYLLFRRKVIPERYDDLLLLDPREAIRDRALFKLS 227
Query: 356 RNEWIMVGTMLLAVSLWIFGDALGIPSVVAAMIGLSILLLLGVL---DWDDCLSEKSAWD 412
+++ +L+A L LGIP + A++G +ILLLL L + + + W
Sbjct: 228 ---LVVLALVLIAFLL---LPFLGIPVSLVALVGAAILLLLARLSPRESVNKILRGVEWS 281
Query: 413 TLAWFAVLVGMAGQLTNLGIVTWMSDSVA 441
TL +F L + G L N G+ ++ +
Sbjct: 282 TLLFFIGLFIVVGGLENAGVTEDLASVLK 310
|
Length = 424 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 562 | |||
| PF00939 | 471 | Na_sulph_symp: Sodium:sulfate symporter transmembr | 100.0 | |
| TIGR00785 | 444 | dass anion transporter. Functionally characterized | 100.0 | |
| COG0471 | 461 | CitT Di- and tricarboxylate transporters [Inorgani | 100.0 | |
| cd01115 | 382 | SLC13_permease Permease SLC13 (solute carrier 13). | 100.0 | |
| TIGR00935 | 429 | 2a45 arsenical pump membrane protein. | 100.0 | |
| cd01116 | 413 | P_permease Permease P (pink-eyed dilution). Mutati | 100.0 | |
| PRK15445 | 427 | arsenical pump membrane protein; Provisional | 100.0 | |
| cd01118 | 416 | ArsB_permease Anion permease ArsB. These permeases | 100.0 | |
| KOG1281 | 586 | consensus Na+/dicarboxylate, Na+/tricarboxylate an | 100.0 | |
| cd00625 | 396 | ArsB_NhaD_permease Anion permease ArsB/NhaD. These | 100.0 | |
| cd01117 | 384 | YbiR_permease Putative anion permease YbiR. Based | 100.0 | |
| PLN00136 | 482 | silicon transporter; Provisional | 100.0 | |
| COG1055 | 424 | ArsB Na+/H+ antiporter NhaD and related arsenite p | 100.0 | |
| PLN00137 | 424 | NHAD transporter family protein; Provisional | 100.0 | |
| PF02040 | 423 | ArsB: Arsenical pump membrane protein; InterPro: I | 99.98 | |
| PRK09547 | 513 | nhaB sodium/proton antiporter; Reviewed | 99.98 | |
| TIGR00775 | 420 | NhaD Na+/H+ antiporter, NhaD family. These protein | 99.97 | |
| KOG2639 | 685 | consensus Sodium sulfate symporter and related ars | 99.97 | |
| TIGR00774 | 515 | NhaB Na+/H+ antiporter NhaB. These proteins are me | 99.97 | |
| TIGR00784 | 431 | citMHS citrate transporter, CitMHS family. This fa | 99.96 | |
| PF03600 | 351 | CitMHS: Citrate transporter; InterPro: IPR004680 C | 99.96 | |
| TIGR00786 | 405 | dctM TRAP transporter, DctM subunit. force-depende | 99.94 | |
| PF00939 | 471 | Na_sulph_symp: Sodium:sulfate symporter transmembr | 99.93 | |
| PRK15060 | 425 | L-dehydroascorbate transporter large permease subu | 99.92 | |
| COG1593 | 379 | DctQ TRAP-type C4-dicarboxylate transport system, | 99.91 | |
| PRK09412 | 433 | anaerobic C4-dicarboxylate transporter; Reviewed | 99.91 | |
| COG0471 | 461 | CitT Di- and tricarboxylate transporters [Inorgani | 99.9 | |
| PF06808 | 416 | DctM: DctM-like transporters; InterPro: IPR010656 | 99.88 | |
| TIGR00785 | 444 | dass anion transporter. Functionally characterized | 99.87 | |
| TIGR00771 | 388 | DcuC c4-dicarboxylate anaerobic carrier family pro | 99.86 | |
| TIGR02123 | 613 | TRAP_fused TRAP transporter, 4TM/12TM fusion prote | 99.85 | |
| TIGR00770 | 430 | Dcu anaerobic c4-dicarboxylate membrane transporte | 99.84 | |
| PRK10654 | 455 | dcuC C4-dicarboxylate transporter DcuC; Provisiona | 99.84 | |
| PRK11588 | 506 | hypothetical protein; Provisional | 99.83 | |
| COG2851 | 433 | CitM H+/citrate symporter [Energy production and c | 99.82 | |
| cd01118 | 416 | ArsB_permease Anion permease ArsB. These permeases | 99.8 | |
| cd01115 | 382 | SLC13_permease Permease SLC13 (solute carrier 13). | 99.79 | |
| TIGR00935 | 429 | 2a45 arsenical pump membrane protein. | 99.78 | |
| PF03606 | 465 | DcuC: C4-dicarboxylate anaerobic carrier; InterPro | 99.78 | |
| cd01116 | 413 | P_permease Permease P (pink-eyed dilution). Mutati | 99.77 | |
| TIGR00819 | 513 | ydaH p-Aminobenzoyl-glutamate transporter family. | 99.76 | |
| COG1288 | 481 | Predicted membrane protein [Function unknown] | 99.76 | |
| PRK15445 | 427 | arsenical pump membrane protein; Provisional | 99.76 | |
| PF02447 | 441 | GntP_permease: GntP family permease; InterPro: IPR | 99.75 | |
| PRK12489 | 443 | anaerobic C4-dicarboxylate transporter; Reviewed | 99.74 | |
| PRK10472 | 445 | low affinity gluconate transporter; Provisional | 99.73 | |
| PLN00136 | 482 | silicon transporter; Provisional | 99.73 | |
| COG4664 | 447 | FcbT3 TRAP-type mannitol/chloroaromatic compound t | 99.71 | |
| PRK14984 | 438 | high-affinity gluconate transporter; Provisional | 99.7 | |
| PRK09804 | 455 | putative cryptic C4-dicarboxylate transporter DcuD | 99.7 | |
| TIGR00791 | 440 | gntP gluconate transporter. This family includes k | 99.68 | |
| PRK11339 | 508 | abgT putative aminobenzoyl-glutamate transporter; | 99.68 | |
| COG2610 | 442 | GntT H+/gluconate symporter and related permeases | 99.68 | |
| COG2056 | 444 | Predicted permease [General function prediction on | 99.67 | |
| cd01117 | 384 | YbiR_permease Putative anion permease YbiR. Based | 99.66 | |
| PRK10034 | 447 | fructuronate transporter; Provisional | 99.66 | |
| PRK09821 | 454 | putative transporter; Provisional | 99.66 | |
| cd00625 | 396 | ArsB_NhaD_permease Anion permease ArsB/NhaD. These | 99.65 | |
| COG1055 | 424 | ArsB Na+/H+ antiporter NhaD and related arsenite p | 99.62 | |
| PF02040 | 423 | ArsB: Arsenical pump membrane protein; InterPro: I | 99.6 | |
| TIGR00529 | 387 | AF0261 converved hypothetical integral membrane pr | 99.58 | |
| PRK09921 | 445 | permease DsdX; Provisional | 99.55 | |
| PLN00137 | 424 | NHAD transporter family protein; Provisional | 99.52 | |
| PF03600 | 351 | CitMHS: Citrate transporter; InterPro: IPR004680 C | 99.49 | |
| PRK09547 | 513 | nhaB sodium/proton antiporter; Reviewed | 99.49 | |
| KOG2639 | 685 | consensus Sodium sulfate symporter and related ars | 99.48 | |
| TIGR00775 | 420 | NhaD Na+/H+ antiporter, NhaD family. These protein | 99.45 | |
| PF03806 | 502 | ABG_transport: AbgT putative transporter family; I | 99.4 | |
| TIGR00931 | 454 | antiport_nhaC Na+/H+ antiporter NhaC. A single mem | 99.34 | |
| COG3069 | 451 | DcuC C4-dicarboxylate transporter [Energy producti | 99.33 | |
| PF03605 | 364 | DcuA_DcuB: Anaerobic c4-dicarboxylate membrane tra | 99.32 | |
| PF04165 | 385 | DUF401: Protein of unknown function (DUF401) ; Int | 99.32 | |
| PF07158 | 149 | MatC_N: Dicarboxylate carrier protein MatC N-termi | 99.26 | |
| COG2978 | 516 | AbgT Putative p-aminobenzoyl-glutamate transporter | 99.2 | |
| KOG1281 | 586 | consensus Na+/dicarboxylate, Na+/tricarboxylate an | 99.18 | |
| TIGR00774 | 515 | NhaB Na+/H+ antiporter NhaB. These proteins are me | 99.08 | |
| PF06450 | 515 | NhaB: Bacterial Na+/H+ antiporter B (NhaB); InterP | 99.07 | |
| COG2704 | 436 | DcuB Anaerobic C4-dicarboxylate transporter [Gener | 99.02 | |
| COG1757 | 485 | NhaC Na+/H+ antiporter [Energy production and conv | 99.01 | |
| PRK09412 | 433 | anaerobic C4-dicarboxylate transporter; Reviewed | 98.89 | |
| TIGR00784 | 431 | citMHS citrate transporter, CitMHS family. This fa | 98.88 | |
| COG4666 | 642 | TRAP-type uncharacterized transport system, fused | 98.84 | |
| TIGR00366 | 438 | conserved hypothetical integral membrane protein. | 98.84 | |
| PF02652 | 522 | Lactate_perm: L-lactate permease; InterPro: IPR003 | 98.81 | |
| PRK12489 | 443 | anaerobic C4-dicarboxylate transporter; Reviewed | 98.78 | |
| TIGR00786 | 405 | dctM TRAP transporter, DctM subunit. force-depende | 98.78 | |
| COG3067 | 516 | NhaB Na+/H+ antiporter [Inorganic ion transport an | 98.68 | |
| PRK10420 | 551 | L-lactate permease; Provisional | 98.64 | |
| TIGR00770 | 430 | Dcu anaerobic c4-dicarboxylate membrane transporte | 98.63 | |
| PRK09695 | 560 | glycolate transporter; Provisional | 98.53 | |
| TIGR00795 | 530 | lctP L-lactate transport. The only characterized m | 98.49 | |
| PF02667 | 453 | SCFA_trans: Short chain fatty acid transporter; In | 98.46 | |
| PF07158 | 149 | MatC_N: Dicarboxylate carrier protein MatC N-termi | 98.36 | |
| COG1620 | 522 | LldP L-lactate permease [Energy production and con | 98.35 | |
| COG1906 | 388 | Uncharacterized conserved protein [Function unknow | 98.34 | |
| PRK10654 | 455 | dcuC C4-dicarboxylate transporter DcuC; Provisiona | 98.21 | |
| PRK11339 | 508 | abgT putative aminobenzoyl-glutamate transporter; | 98.16 | |
| TIGR00791 | 440 | gntP gluconate transporter. This family includes k | 98.14 | |
| PRK11588 | 506 | hypothetical protein; Provisional | 98.08 | |
| PF03553 | 303 | Na_H_antiporter: Na+/H+ antiporter family; InterPr | 98.08 | |
| TIGR00819 | 513 | ydaH p-Aminobenzoyl-glutamate transporter family. | 98.08 | |
| PF02447 | 441 | GntP_permease: GntP family permease; InterPro: IPR | 97.91 | |
| COG1288 | 481 | Predicted membrane protein [Function unknown] | 97.9 | |
| PRK10034 | 447 | fructuronate transporter; Provisional | 97.86 | |
| TIGR00771 | 388 | DcuC c4-dicarboxylate anaerobic carrier family pro | 97.84 | |
| PF03606 | 465 | DcuC: C4-dicarboxylate anaerobic carrier; InterPro | 97.8 | |
| PRK09821 | 454 | putative transporter; Provisional | 97.77 | |
| TIGR00931 | 454 | antiport_nhaC Na+/H+ antiporter NhaC. A single mem | 97.74 | |
| COG2610 | 442 | GntT H+/gluconate symporter and related permeases | 97.72 | |
| PRK10472 | 445 | low affinity gluconate transporter; Provisional | 97.71 | |
| PRK14984 | 438 | high-affinity gluconate transporter; Provisional | 97.69 | |
| PRK15060 | 425 | L-dehydroascorbate transporter large permease subu | 97.68 | |
| TIGR00529 | 387 | AF0261 converved hypothetical integral membrane pr | 97.61 | |
| COG1593 | 379 | DctQ TRAP-type C4-dicarboxylate transport system, | 97.54 | |
| PF06808 | 416 | DctM: DctM-like transporters; InterPro: IPR010656 | 97.48 | |
| PF03605 | 364 | DcuA_DcuB: Anaerobic c4-dicarboxylate membrane tra | 97.45 | |
| PF03553 | 303 | Na_H_antiporter: Na+/H+ antiporter family; InterPr | 97.44 | |
| PF07854 | 347 | DUF1646: Protein of unknown function (DUF1646); In | 97.44 | |
| TIGR02123 | 613 | TRAP_fused TRAP transporter, 4TM/12TM fusion prote | 97.37 | |
| PRK09921 | 445 | permease DsdX; Provisional | 97.27 | |
| PF06149 | 218 | DUF969: Protein of unknown function (DUF969); Inte | 97.26 | |
| COG2031 | 446 | AtoE Short chain fatty acids transporter [Lipid me | 97.22 | |
| COG1757 | 485 | NhaC Na+/H+ antiporter [Energy production and conv | 97.09 | |
| COG2056 | 444 | Predicted permease [General function prediction on | 97.08 | |
| PRK09804 | 455 | putative cryptic C4-dicarboxylate transporter DcuD | 97.03 | |
| COG2851 | 433 | CitM H+/citrate symporter [Energy production and c | 96.82 | |
| PF03806 | 502 | ABG_transport: AbgT putative transporter family; I | 96.76 | |
| PF07399 | 438 | DUF1504: Protein of unknown function (DUF1504); In | 96.57 | |
| PF06166 | 308 | DUF979: Protein of unknown function (DUF979); Inte | 96.32 | |
| PF04165 | 385 | DUF401: Protein of unknown function (DUF401) ; Int | 96.12 | |
| COG2704 | 436 | DcuB Anaerobic C4-dicarboxylate transporter [Gener | 95.43 | |
| TIGR00366 | 438 | conserved hypothetical integral membrane protein. | 95.21 | |
| COG2978 | 516 | AbgT Putative p-aminobenzoyl-glutamate transporter | 95.08 | |
| COG3819 | 229 | Predicted membrane protein [Function unknown] | 94.9 | |
| COG3069 | 451 | DcuC C4-dicarboxylate transporter [Energy producti | 94.85 | |
| PF02652 | 522 | Lactate_perm: L-lactate permease; InterPro: IPR003 | 94.07 | |
| COG4664 | 447 | FcbT3 TRAP-type mannitol/chloroaromatic compound t | 93.78 | |
| COG3817 | 313 | Predicted membrane protein [Function unknown] | 92.28 | |
| PF06166 | 308 | DUF979: Protein of unknown function (DUF979); Inte | 92.03 | |
| PRK10420 | 551 | L-lactate permease; Provisional | 91.84 | |
| TIGR00795 | 530 | lctP L-lactate transport. The only characterized m | 91.73 | |
| COG1620 | 522 | LldP L-lactate permease [Energy production and con | 91.63 | |
| PRK09695 | 560 | glycolate transporter; Provisional | 91.03 | |
| COG4666 | 642 | TRAP-type uncharacterized transport system, fused | 86.96 | |
| COG3493 | 438 | CitS Na+/citrate symporter [Energy production and | 86.96 | |
| PF02667 | 453 | SCFA_trans: Short chain fatty acid transporter; In | 85.38 | |
| PF07399 | 438 | DUF1504: Protein of unknown function (DUF1504); In | 85.25 | |
| PF13726 | 88 | Na_H_antiport_2: Na+-H+ antiporter family | 84.95 | |
| PF07854 | 347 | DUF1646: Protein of unknown function (DUF1646); In | 84.2 |
| >PF00939 Na_sulph_symp: Sodium:sulfate symporter transmembrane region; InterPro: IPR001898 Integral membrane proteins that mediate the intake of a wide variety of molecules with the concomitant uptake of sodium ions (sodium symporters) can be grouped, on the basis of sequence and functional similarities into a number of distinct families | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-69 Score=585.22 Aligned_cols=466 Identities=31% Similarity=0.540 Sum_probs=430.2
Q ss_pred ccchhHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhcCCCh---HHHHHh
Q 008532 92 GAKLLPFVISISIGLILRFLVPKPVEVSPQAWQLLSIFLSTIAGLVLSPLPVGAWAFLGLTTSIVTRTLAF---PTAFAA 168 (562)
Q Consensus 92 ~~~~~~~~i~~~~~l~~~~~~p~p~~ls~~~~~~l~i~~~~i~lw~~~~~p~~~~all~~~ll~l~gv~~~---~~~~~~ 168 (562)
++|+.++++++++++++ +++|.||++++++++++++++.++++|++|++|.++++++.+.++.+++..++ |+++++
T Consensus 1 ~k~~~~~~~~~~i~~~i-~~lp~p~~l~~~~~~~l~i~~~~ii~w~te~iP~~vtal~~~~l~~~~~~~~~~~~~~~~s~ 79 (471)
T PF00939_consen 1 QKKWIKLIIALAIFLII-WLLPAPEGLSPQGMRCLAIFLFAIILWITEAIPLPVTALLIIILLPVLGGVDPVAAKEAFSG 79 (471)
T ss_pred CccHHHHHHHHHHHHHH-HHhcccccCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccccccHHHHHHH
Confidence 46889999999999887 78899999999999999999999999999999999999999999977777776 999999
Q ss_pred ccchHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhhhcCCChhhhhhHhHHHHHHHHHHHc
Q 008532 169 FTNEVIWLIVISFFFARGFVKTGLGDRIATYFVKWLGKSTLGLSYGLTFSEALIAPAMPSTTARAGGVFLPIIKSLSLSA 248 (562)
Q Consensus 169 ~~~~~i~li~~~~~la~al~~tGl~~ria~~i~~~~g~~~~~l~~~l~l~~~~ls~~~~s~~a~~~~i~~Pi~~~i~~~~ 248 (562)
|+++++|+++++|+++.+++|||++||++++++++.|+++.++.++++..+.+++.+.++++|+++.++.|++.+++++.
T Consensus 80 f~s~~v~li~g~f~i~~al~ktgL~~Ria~~~l~~~g~~~~~l~~~~~~~~~~l~~~~ps~~a~~~~i~~pi~~~i~~~~ 159 (471)
T PF00939_consen 80 FGSPTVWLIIGGFIIGAALEKTGLDKRIALWLLKRFGGSPKGLLFAIMLAGLLLSFFIPSTTARAAPILLPILLSICEAL 159 (471)
T ss_pred HcCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHhCCchheehhHhhHHHHHHhccCccHHHHHHHHHHHHHHhhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999886335669999999999
Q ss_pred CCCCCCCCcchhhhHHHHHhHHhhhhhcccccccchhHHHHHHHHHH-cCCcccccHHHHHHHHHHHHHHHHHHHHHHHH
Q 008532 249 GSKPGDSSSKKLGSYLIQSQFQSAGNSSALFLTAAAQNLLCLKLAEE-LGVIISSPWVSWFKAACVPALVALLATPLILY 327 (562)
Q Consensus 249 g~~p~~~~~~~~~~~l~l~~~~~~~~~g~~t~~g~~~n~i~~g~~~~-~G~~i~~~~~~w~~~~~~~~li~~~~~~~~~~ 327 (562)
|.++++++++|+++.++++.+++++++|+.+++|+++|.+..+++++ .|++++ |.||+.+++|++++..++.+++.+
T Consensus 160 ~~~~~~~~~~~~~~~l~l~~~~~a~~~g~~~~~g~~~n~i~~~~l~~~~g~~is--f~~w~~~~~p~~ii~~~~~~~~~~ 237 (471)
T PF00939_consen 160 GSKPSSKTPRNLGKALMLGIAFAASIGGMGTLTGSAPNLIAAGFLESATGISIS--FLDWFIYALPPGIIMLVLMWLILY 237 (471)
T ss_pred cchhhhhHHHHHHHHHHHHHhhhccccccccccCCCchHHHHHHHHhhcCCccc--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99887555567899999999999999999999999999999999987 788999 999999999999999999999999
Q ss_pred HhcCCCCCCCCChhHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHhCCcChHHHhhc
Q 008532 328 KLYPPEVKDTPDAPAMAAKKLKQLGPVTRNEWIMVGTMLLAVSLWIFGDALGIPSVVAAMIGLSILLLLGVLDWDDCLSE 407 (562)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~e~~~l~i~~~~i~l~i~~~~~gi~~~~vall~~~ll~~~gvl~~~~~~~~ 407 (562)
+.+|+|.++.++.+|..++|++|+||++++||+.+.++++++++|++++.||++.+.++++++.++++.|+++|||..++
T Consensus 238 ~l~~~~~~~~~~~~~~~~~~~~~lg~~s~~Ek~~~~i~~~~i~lw~~~~~~~i~~~~va~~~~~ll~~~~il~~~d~~~~ 317 (471)
T PF00939_consen 238 KLFKPDVKNLPDGKEFIKKELKELGPMSKKEKKVLVIFLLTILLWITESFHGIDPAIVALLGAVLLFLPGILTWKDAAQK 317 (471)
T ss_pred HHhccccccchhhHHHHHHHHHhcCCCchhHhhhhhhhhhhhhcccCcccCCCCHHHHHHHHHHHHHHHHhccHHHHHhc
Confidence 99999887777778888999999999999999999999999999999999999999999999999999999999997677
Q ss_pred cCChhHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHhhccCCCchHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHH
Q 008532 408 KSAWDTLAWFAVLVGMAGQLTNLGIVTWMSDSVAKCLQSFSLSWPAAFGVLQASYFLIHYLFASQTGHVGALYSAFLAMH 487 (562)
Q Consensus 408 ~i~w~~l~l~~~~~~l~~~l~~tGi~~~ia~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~f~S~~a~~~il~Pi~~~la 487 (562)
++||+++++++|+++++.+++++|+.+|+++.+.+.+++.+ +...+.++..+..+.+++|+||+++..++.|++.+++
T Consensus 318 ~i~W~~l~~~~g~~~lg~~l~~sG~~~~la~~l~~~l~~~~--~~~~~~~i~~~~~~~~~~~~s~~a~~~il~Pi~~~~a 395 (471)
T PF00939_consen 318 KIPWGTLFLFGGALSLGTALEKSGAAKWLANVLLPLLGGLS--PFLVVLVILLVTVLLLTNFMSNTATVAILIPIVISLA 395 (471)
T ss_pred CCCchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHccccc--cHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999988433 2333434444445678899999999999999999999
Q ss_pred HHc-CCCHHHHHHHHHHHHhhhhhhccccchhhHHhhcCCCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcC
Q 008532 488 LAA-GVPGVLAALALAYNTNLFGAITHYSSGQAAVYYGAGYIDLPDVFKMGFTMALVNAIIWGVTGTFWWKFLGLY 562 (562)
Q Consensus 488 ~~~-Gv~p~~~~l~l~~~~~~~~~~tP~~s~~n~i~~~~g~i~~~d~~k~g~~~~li~~vi~~~v~~~~w~~lGl~ 562 (562)
++. |.||....+.++++++..++++|+++++|++.++.|+++.||++|.|++++++..++...+.++|||++|+|
T Consensus 396 ~~~~g~~p~~~~l~~~~~~~~~~~~lP~~sp~~~i~~~~g~~~~~d~~k~G~~~~ii~~iv~~~~~~~~w~~iG~~ 471 (471)
T PF00939_consen 396 AALGGINPLALALIVAFASSFAGFLLPYSSPPNAIAYGTGYYKFKDFIKYGFPLTIIAIIVIILVAYPYWKLIGLW 471 (471)
T ss_pred hhccCCChHHHHHHHHHHhhhccccCCcCCcceeEEEcCCCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999 999999999999988744499999999999999999999999999999999999999999999999999998
|
One of these families currently consists of the following proteins: Mammalian sodium/sulphate cotransporter []. Mammalian renal sodium/dicarboxylate cotransporter [], which transports succinate and citrate. Mammalian intestinal sodium/dicarboxylate cotransporter. Chlamydomonas reinhardtii putative sulphur deprivation response regulator SAC1 []. Caenorhabditis elegans hypothetical proteins B0285.6, F31F6.6, K08E5.2 and R107.1. Escherichia coli hypothetical protein yfbS. Haemophilus influenzae hypothetical protein HI0608. Synechocystis sp. (strain PCC 6803) hypothetical protein sll0640. Methanocaldococcus jannaschii (Methanococcus jannaschii) hypothetical protein MJ0672. These transporters are proteins of from 430 to 620 amino acids which are highly hydrophobic and which probably contain about 12 transmembrane regions.; GO: 0005215 transporter activity, 0006814 sodium ion transport, 0055085 transmembrane transport, 0016020 membrane |
| >TIGR00785 dass anion transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-55 Score=472.23 Aligned_cols=438 Identities=39% Similarity=0.709 Sum_probs=382.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHhhcCCChHHHHHHH-HHHHHHhcCCC---hHHHHHhccchHHHHHHHHHHHHHHHH
Q 008532 113 PKPVEVSPQAWQLLSIFLSTIAGLVLSPLPVGAWAFLG-LTTSIVTRTLA---FPTAFAAFTNEVIWLIVISFFFARGFV 188 (562)
Q Consensus 113 p~p~~ls~~~~~~l~i~~~~i~lw~~~~~p~~~~all~-~~ll~l~gv~~---~~~~~~~~~~~~i~li~~~~~la~al~ 188 (562)
|.||++++++++++++++.++++|+++++|.+++++++ +.++.++|+.+ +||++++++|++++++++++.++.+++
T Consensus 1 ~~~~~l~~~~~~~l~i~~~~i~~w~~~~~~~~~~a~~~~~~~l~l~g~~~~~~~~~~~~~~~~~~v~l~~~~~~i~~al~ 80 (444)
T TIGR00785 1 PVPDGLNSGAWLLLAIFVAAIVGWILEPLPLPVTALLAIPIIAVLLGVLSAFKFKNALSGFADPTIWLFFGAFILATALV 80 (444)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhccCCcchHHHHHHhcCCcHHHHHHHHHHHHHHHH
Confidence 66999999999999999999999999999999999995 88899999999 999999999999999999999999999
Q ss_pred HhCHHHHHHHHHHHHhCCChhhHHH-HHHHHHHHhhhcCCChhhhhhHhHHHHHHHHHHHcCCCCCCCCcchhhhHHHHH
Q 008532 189 KTGLGDRIATYFVKWLGKSTLGLSY-GLTFSEALIAPAMPSTTARAGGVFLPIIKSLSLSAGSKPGDSSSKKLGSYLIQS 267 (562)
Q Consensus 189 ~tGl~~ria~~i~~~~g~~~~~l~~-~l~l~~~~ls~~~~s~~a~~~~i~~Pi~~~i~~~~g~~p~~~~~~~~~~~l~l~ 267 (562)
|+|+.||+++++.++.++++.+..+ .+++...+.+.+.+|+ +|+.+++.|++.+++++.|.+| +++++|..+.++++
T Consensus 81 ~tGl~~~ia~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~sn~-ar~~~i~~Pi~~~i~~~~g~~~-~~~~~~~~~~l~~~ 158 (444)
T TIGR00785 81 KTGLGKRIAYKLVGKMGGTTLGLGYFLVFLETLLAPMWPSNT-ARAGGILLPIIKSLLPLLGSKP-EKSPRKIGKYLMLG 158 (444)
T ss_pred HcCchHHHHHHHHHHHCCCChHHHHHHHHHHHHHHhhCchHh-HhHHHHHHHHHHHHHHHhCCCC-CcccchHHHHHHHH
Confidence 9999999999999999885545444 5555555555555554 5222599999999999999988 34456777788888
Q ss_pred hHHhhhhhcccccccchhHHHHHHHHHH-cCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCChhHHHHH
Q 008532 268 QFQSAGNSSALFLTAAAQNLLCLKLAEE-LGVIISSPWVSWFKAACVPALVALLATPLILYKLYPPEVKDTPDAPAMAAK 346 (562)
Q Consensus 268 ~~~~~~~~g~~t~~g~~~n~i~~g~~~~-~G~~i~~~~~~w~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (562)
..++++.+++.+|+|+++|+++.++.+| .|++++ +.||++.+.|++++..++.+++.++++|+|.++.++.++..++
T Consensus 159 ~~~~a~~g~~~t~~g~~~n~i~~~~~~~~~g~~i~--~~~~~~~~~p~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (444)
T TIGR00785 159 IAYSASIGSSGFLTGSAPNALAAGILSKILGIQIS--WGDWFLAGLPLGIILLLLVPLLLYVLFPPELKLKDEVDLWAKE 236 (444)
T ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCcC--HHHHHHHHhHHHHHHHHHHHHHHHHHcCccccCCccHHHHHHH
Confidence 8999999999999999999999998877 788899 9999999999999999999999999998776554444455566
Q ss_pred HhhhcCCCCHHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHhCCcChHHHhhccCChhHHHHHHHHHHHHHH
Q 008532 347 KLKQLGPVTRNEWIMVGTMLLAVSLWIFGDALGIPSVVAAMIGLSILLLLGVLDWDDCLSEKSAWDTLAWFAVLVGMAGQ 426 (562)
Q Consensus 347 ~~~~~g~~t~~e~~~l~i~~~~i~l~i~~~~~gi~~~~vall~~~ll~~~gvl~~~~~~~~~i~w~~l~l~~~~~~l~~~ 426 (562)
++++.++++++|++.+++++.++++|+++..++++..+++++++.++.+.|++++||+.+++++|+++++++|++.++.+
T Consensus 237 ~~~~~~~~~~~e~~~l~v~~~~i~~~~~~~~~~~~~~~~al~~~~ll~~~g~~~~~~~~~~~v~w~~l~~~~g~~~l~~~ 316 (444)
T TIGR00785 237 ELEEMGPMSFREKALLGIFLLALLLWIFGGSLGINASVVALLAVVLMLFLGIVTWKDIQKNKVAWNTLILFGGLIGLAGG 316 (444)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHhCcccHHHHhhccCCcHHHHHHHHHHHHHHH
Confidence 78889999999999999999999999999989999999999999999999999999986545999999999999999999
Q ss_pred HHHhCHHHHHHHHHHHhhccCCCchHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 008532 427 LTNLGIVTWMSDSVAKCLQSFSLSWPAAFGVLQASYFLIHYLFASQTGHVGALYSAFLAMHLAAGVPGVLAALALAYNTN 506 (562)
Q Consensus 427 l~~tGi~~~ia~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~f~S~~a~~~il~Pi~~~la~~~Gv~p~~~~l~l~~~~~ 506 (562)
++++|+.+|+++.+.+..++.+ .+..+..+........++|.||++++.++.|+..+++++.|+||..+.+..+++++
T Consensus 317 l~~sG~~~~i~~~l~~~~~~~~--~~~~~l~~~~~~~~~~~~~~s~~~~~~i~~Pi~~~ia~~~G~~p~~~~~~~~~~~~ 394 (444)
T TIGR00785 317 LKKSGFIKWFSEKLVGILDGLS--PTIAVLVLVVLFYIILYFFASNTAHTAALVPIFFSVASAQGIPLELLALALALSAS 394 (444)
T ss_pred HHHcCHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 9999999999999998875433 12233333334445566799999999999999999999999999999999999988
Q ss_pred hhhhhccccchhhHHhhcCCCCCHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 008532 507 LFGAITHYSSGQAAVYYGAGYIDLPDVFKMGFTMALVNAIIWGVTGTFWW 556 (562)
Q Consensus 507 ~~~~~tP~~s~~n~i~~~~g~i~~~d~~k~g~~~~li~~vi~~~v~~~~w 556 (562)
..++++|+++++|.+.++.++++++|++|.++|..++..++..++++.||
T Consensus 395 ~~~~~tP~~s~~n~i~~~~g~~~~~~~~k~~~p~~l~~~~~~~~~~~~~w 444 (444)
T TIGR00785 395 LMGFLTPYATPPNAIAYGSGYVKIKDMWRVGAIIGIVGLIVLLLVGTLWW 444 (444)
T ss_pred HHHHhcCCCCCccceeecCCCccHHHHHHhHHHHHHHHHHHHHHHHHHhC
Confidence 55699999999999999999999999999999999999999999999998
|
Functionally characterized proteins of the DASS family transport (1) organic di- and tricarboxylates of the Krebs Cycle as well as dicarboxylate amino acid, (2) inorganic sulfate and (3) phosphate. The animal NaDC-1 cotransport 3 Na+ with each dicarboxylate. Protonated tricarboxylates are also cotransported with 3Na+. |
| >COG0471 CitT Di- and tricarboxylate transporters [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-49 Score=420.54 Aligned_cols=447 Identities=33% Similarity=0.592 Sum_probs=398.9
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhcC----CChHHHHHhccchH
Q 008532 98 FVISISIGLILRFLVPKPVEVSPQAWQLLSIFLSTIAGLVLSPLPVGAWAFLGLTTSIVTRT----LAFPTAFAAFTNEV 173 (562)
Q Consensus 98 ~~i~~~~~l~~~~~~p~p~~ls~~~~~~l~i~~~~i~lw~~~~~p~~~~all~~~ll~l~gv----~~~~~~~~~~~~~~ 173 (562)
.++...+..++ ++.|.|..++...+ +.++++.++..|++|++|...++++.+.+..+.+. .+.+++++.+.+++
T Consensus 8 ~~~~~~~~~~~-~~~~~~~~~~~~~~-~~a~~~~~~~~~i~~~~~~~~~~ll~~~~~~l~~~~~~~~~~~~~l~~~~~~~ 85 (461)
T COG0471 8 LLALLVLLALV-LLGPVPFGLSGFAW-LFAILVAAIILWILEAIPLFALAILVIVLLVLSGFILAISASKLALSGFANST 85 (461)
T ss_pred HHHHHHHHHHH-HHhcCccccCchHH-HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhccccHHHHHHHhhccH
Confidence 34444455555 56677778888888 99999999999999999999999999999999998 88999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhh-hcCCChhhhhhHhHHHHHHHHHHHcCCCC
Q 008532 174 IWLIVISFFFARGFVKTGLGDRIATYFVKWLGKSTLGLSYGLTFSEALIA-PAMPSTTARAGGVFLPIIKSLSLSAGSKP 252 (562)
Q Consensus 174 i~li~~~~~la~al~~tGl~~ria~~i~~~~g~~~~~l~~~l~l~~~~ls-~~~~s~~a~~~~i~~Pi~~~i~~~~g~~p 252 (562)
+++++++|.++.+++++|+.+|++++..+++|+++.++.+.++++.++++ .+.+|+ ++. .++.|+..++++..|.++
T Consensus 86 I~l~~~~f~~s~~~~~~gl~~~la~~~l~~~~~~p~~l~~~l~~~~~~ls~~~~snt-at~-~i~~piv~~~~~~~~~~~ 163 (461)
T COG0471 86 IWLIFGLFLLSKGLEKTGLGKRLALHLLRFFGTTPRGLALGLVLLTLFLSPAFPSNT-ATG-GIMLPLILSLSPLLGSPP 163 (461)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHhCceeccc-chh-HhhHHhhhcchhhcCCCh
Confidence 99999999999999999999999999999999999999999999999999 555555 444 699999999999998876
Q ss_pred CCCCcchhhhHHHHHhHHhhhhhcccccccchhHHHHHHHHHHcCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 008532 253 GDSSSKKLGSYLIQSQFQSAGNSSALFLTAAAQNLLCLKLAEELGVIISSPWVSWFKAACVPALVALLATPLILYKLYPP 332 (562)
Q Consensus 253 ~~~~~~~~~~~l~l~~~~~~~~~g~~t~~g~~~n~i~~g~~~~~G~~i~~~~~~w~~~~~~~~li~~~~~~~~~~~~~~~ 332 (562)
+ +|.++.+.+....++++++.++++|+++|.++.+..++.+ ++ |.+|++.+.|+.++.....++++|+.+|+
T Consensus 164 ~----~~~~~~l~~~i~~~~~ig~~~~~ig~~~N~i~~~~~~~~~--~~--~~~w~~~~~p~~iv~l~~~~li~~~~~~~ 235 (461)
T COG0471 164 R----DKIGKRLILGIALAANIGSALTPIGNPPNIIAAGLLNPIS--LS--WGEWFLAMLPLGILLLLLLLLLLYKLFPP 235 (461)
T ss_pred H----HHHHHHHHHHHHHHhHhhcccccccCCccHHHHHhhcccC--CC--HHHHHHHHhhHHHHHHHHHHHHHHhhcCh
Confidence 4 3677889999999999999999999999999998866422 78 99999999999999999999999999998
Q ss_pred -CCCCCCChhHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHhcCCCCC-ChHHHHHHHHHHHHHhCCcChHHHhhccCC
Q 008532 333 -EVKDTPDAPAMAAKKLKQLGPVTRNEWIMVGTMLLAVSLWIFGDALGI-PSVVAAMIGLSILLLLGVLDWDDCLSEKSA 410 (562)
Q Consensus 333 -~~~~~~~~~~~~~~~~~~~g~~t~~e~~~l~i~~~~i~l~i~~~~~gi-~~~~vall~~~ll~~~gvl~~~~~~~~~i~ 410 (562)
+.++.++.+...+++.+++++++++|+....++.++...|.+++.++. +.+.+++++..++++.++++|+|.. +++|
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~l~~~~w~~~~~~~~~~~~~~ali~~~~~~~~~vl~~~~~~-~~i~ 314 (461)
T COG0471 236 REIKETPNNPVAAKRELKELGPLLRDEKLLLGIFLLLLLLWIFGKLLGKIDATLIALIPVALLLLAGVLTWKEVY-KKID 314 (461)
T ss_pred HhhccCcchHHHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHhHHHHH-HhCC
Confidence 566667777778888999999999999999999999999999887763 7788999999999999999998765 6899
Q ss_pred hhHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHhhccCCCchHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHc
Q 008532 411 WDTLAWFAVLVGMAGQLTNLGIVTWMSDSVAKCLQSFSLSWPAAFGVLQASYFLIHYLFASQTGHVGALYSAFLAMHLAA 490 (562)
Q Consensus 411 w~~l~l~~~~~~l~~~l~~tGi~~~ia~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~f~S~~a~~~il~Pi~~~la~~~ 490 (562)
|+++++++|++.++++++++|..+|+++.+.+..++.+ ...+.++..+....+++|.||++++.+++|++..+++++
T Consensus 315 W~~lilf~g~i~l~~~l~~tG~~~~i~~~l~~~~~~~~---~~~il~~~~~~~~~~~~f~SntA~~~~m~Pi~~~ia~~l 391 (461)
T COG0471 315 WGTLILFGGLIALGSALSKTGAIAWIAGLLAGSLGGLG---PFAILLLLLLLTLVLTLFASNTATAIAMVPIAIALASAL 391 (461)
T ss_pred chHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCCCh---HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999887654 233444455556778999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhhhhhhccccchhhHHhhcCCCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhc
Q 008532 491 GVPGVLAALALAYNTNLFGAITHYSSGQAAVYYGAGYIDLPDVFKMGFTMALVNAIIWGVTGTFWWKFLGL 561 (562)
Q Consensus 491 Gv~p~~~~l~l~~~~~~~~~~tP~~s~~n~i~~~~g~i~~~d~~k~g~~~~li~~vi~~~v~~~~w~~lGl 561 (562)
|.+|..+.+..+.+++ +++++|+++++|.+++|.|+++++||.|.|+++++++.++...+.+.||+..|+
T Consensus 392 ~~~p~~~~~~v~~~as-~~~~tpv~~~~n~iv~g~G~~k~~d~~~~G~~l~~v~~iv~i~~~~~~~~~~~~ 461 (461)
T COG0471 392 GGAPLLLLMLVAVSAS-GGFLTPVGSPPNPIALGSGYVKFKDWWKVGFILSIVLIIVLLVIGLLWWPVLGL 461 (461)
T ss_pred CCCchHHHHHHHHHHh-hhhhcCCCCCCCceEECCCCccHHHHHHhccHHHHHHHHHHHHHHHHHHhhcCC
Confidence 9999777777777665 999999999999999999999999999999999999999999999999998764
|
|
| >cd01115 SLC13_permease Permease SLC13 (solute carrier 13) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-43 Score=371.16 Aligned_cols=379 Identities=22% Similarity=0.286 Sum_probs=326.1
Q ss_pred HHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhcCCChHHHHHhccchHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhC
Q 008532 126 LSIFLSTIAGLVLSPLPVGAWAFLGLTTSIVTRTLAFPTAFAAFTNEVIWLIVISFFFARGFVKTGLGDRIATYFVKWLG 205 (562)
Q Consensus 126 l~i~~~~i~lw~~~~~p~~~~all~~~ll~l~gv~~~~~~~~~~~~~~i~li~~~~~la~al~~tGl~~ria~~i~~~~g 205 (562)
+++++.++++|++|++|.+++++.++.++.++|+.++||++++++|++++++.+++.++++++|+|+.||+++++.++.+
T Consensus 1 ~~i~~~~i~~w~~~~~~~~~~al~~~~~l~~~g~~~~~~~~~~~~~~~i~li~g~~~l~~~~~~tG~~~~la~~i~~~~~ 80 (382)
T cd01115 1 LAILVFAAVLFVTEALPLDVTALLVPVLLVLLGVVPPKEAFSGFSDPAVILFLAGFILGAALTRTGLAKRIATKLLKRAG 80 (382)
T ss_pred CHHHHHHHHHHHHCcccHHHHHHHHHHHHHHhCCCCHHHHHHHcCChHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHcC
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CChhhHHHHHHHHHHHhhhcCCChhhhhhHhHHHHHHHHHHHcCCCCCCCCcchhhhHHHHHhHHhhhhhcccccccchh
Q 008532 206 KSTLGLSYGLTFSEALIAPAMPSTTARAGGVFLPIIKSLSLSAGSKPGDSSSKKLGSYLIQSQFQSAGNSSALFLTAAAQ 285 (562)
Q Consensus 206 ~~~~~l~~~l~l~~~~ls~~~~s~~a~~~~i~~Pi~~~i~~~~g~~p~~~~~~~~~~~l~l~~~~~~~~~g~~t~~g~~~ 285 (562)
++++.+...+++.+.+++.+.+|+. ++ .++.|+..+++++.|.+| +.+++...++++.+++.+|+|+++
T Consensus 81 ~~~~~~~~~~~~~~~~ls~~~s~~~-~~-~i~~Pi~~~~~~~~g~~~---------~~~~l~~~~~~~~g~~~~p~g~~~ 149 (382)
T cd01115 81 KGERRLLLLLMLVTAFLSAFMSNTA-TV-AIMLPVALGLAAKLDISP---------SRLLMPLAFAASIGGMLTLIGTPP 149 (382)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhhHH-HH-HHHHHHHHHHHHHcCCCh---------hHHHHHHHHHHHhcccceecCCch
Confidence 8888899999999999999997765 44 599999999999999876 357778888999999999999999
Q ss_pred HHHHHHHHHHc-CCcccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCChhHHHHHHhhhcCCCCHHHHHHHHH
Q 008532 286 NLLCLKLAEEL-GVIISSPWVSWFKAACVPALVALLATPLILYKLYPPEVKDTPDAPAMAAKKLKQLGPVTRNEWIMVGT 364 (562)
Q Consensus 286 n~i~~g~~~~~-G~~i~~~~~~w~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~e~~~l~i 364 (562)
|.+..+..++. +.+++ +.||++.+.|+.++..++.++. +...+
T Consensus 150 n~i~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~----------------------------------~~~~~ 193 (382)
T cd01115 150 NLVASGYLESLGGQGFS--FFEFTPIGLPLLIIGLLYLWFI----------------------------------FRLAV 193 (382)
T ss_pred HHHHHHHHHHccCCCcC--HHHHHHHHHHHHHHHHHHHHHH----------------------------------HHHHH
Confidence 99999988874 44578 9999999998876655433332 11234
Q ss_pred HHHHHHHHHhcCC--CCCChHHHHHHHHHHHHHhCCcChHHHhhccCChhHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Q 008532 365 MLLAVSLWIFGDA--LGIPSVVAAMIGLSILLLLGVLDWDDCLSEKSAWDTLAWFAVLVGMAGQLTNLGIVTWMSDSVAK 442 (562)
Q Consensus 365 ~~~~i~l~i~~~~--~gi~~~~vall~~~ll~~~gvl~~~~~~~~~i~w~~l~l~~~~~~l~~~l~~tGi~~~ia~~l~~ 442 (562)
++..+++|++.+. .+.+....+.++..++...|..++||..+ +++|++++++++++.++++++++|+.||+++.+.+
T Consensus 194 ~~~~i~l~~~~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~-~~~w~~l~~~~~~~~l~~~l~~~Gl~~~ia~~l~~ 272 (382)
T cd01115 194 LIITIVLLAALAAITGLLPVSVAIAIGAIVLVFGGVLLTKEDYK-SIDWGIIFLFAGGIPLGKALESSGAAALIAEALIS 272 (382)
T ss_pred HHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHccCCHHHHHH-cCCchHHHHHHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 5556666765542 44788888899998888899999999864 79999999999999999999999999999999998
Q ss_pred hhccCCCchHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhhhhhccccchhhHHh
Q 008532 443 CLQSFSLSWPAAFGVLQASYFLIHYLFASQTGHVGALYSAFLAMHLAAGVPGVLAALALAYNTNLFGAITHYSSGQAAVY 522 (562)
Q Consensus 443 ~~~~~~~~~~~~~~~l~~~~~~~~~~f~S~~a~~~il~Pi~~~la~~~Gv~p~~~~l~l~~~~~~~~~~tP~~s~~n~i~ 522 (562)
..++.+ +......+.+.. ...+++.||++++.++.|++.+++++.|+||..+.+..+++++ .++++|+++++|.+.
T Consensus 273 ~~~~~~--~~~~~~~~~~~~-~~ls~~~sn~~~~~i~~Pi~~~~~~~~g~~p~~~~~~~~~~~~-~~~~tp~~~~~n~i~ 348 (382)
T cd01115 273 LLGGLP--PFAILLLLCLLT-LVLTNFISNTATAVLLAPIALSIALSLGLPPEALLLAVAIGAS-CAFMLPVGTPPNAIV 348 (382)
T ss_pred HhCCCC--HHHHHHHHHHHH-HHHHHHhhHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHH-HHHcCccCCCCCeee
Confidence 655432 222232222222 3355789999999999999999999999999999999999987 589999999999999
Q ss_pred hcCCCCCHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 008532 523 YGAGYIDLPDVFKMGFTMALVNAIIWGVTGTFWW 556 (562)
Q Consensus 523 ~~~g~i~~~d~~k~g~~~~li~~vi~~~v~~~~w 556 (562)
++.++++++|++|+++|..+++.++...+.+.||
T Consensus 349 ~~~~~i~~~~~~~~~~p~~i~~~~~~~~~~~~~~ 382 (382)
T cd01115 349 LGPGGYKFSDFAKVGLPLSILSLVVSVTMIPLIW 382 (382)
T ss_pred eCCCCccHHHHHHhCHHHHHHHHHHHHHHHHHHC
Confidence 9999999999999999999999999999999987
|
The sodium/dicarboxylate cotransporter NaDC-1 has been shown to translocate Krebs cycle intermediates such as succinate, citrate, and alpha-ketoglutarate across plasma membranes rabbit, human, and rat kidney. It is related to renal and intestinal Na+/sulfate cotransporters and a few putative bacterial permeases. The SLC13-type proteins belong to the ArsB/NhaD superfamily of permeases that translocate sodium and various anions across biological membranes in all three kingdoms of life. A typical ArsB/NhaD permease is composed of 8-13 transmembrane helices. |
| >TIGR00935 2a45 arsenical pump membrane protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-42 Score=372.71 Aligned_cols=403 Identities=16% Similarity=0.140 Sum_probs=320.8
Q ss_pred HHHHHHHHHHHHHhhcCC--ChHHHHHHHHHHHHHhcCCChHHHHH--hccchHHHHHHHHHHHHHHHHHhCHHHHHHHH
Q 008532 124 QLLSIFLSTIAGLVLSPL--PVGAWAFLGLTTSIVTRTLAFPTAFA--AFTNEVIWLIVISFFFARGFVKTGLGDRIATY 199 (562)
Q Consensus 124 ~~l~i~~~~i~lw~~~~~--p~~~~all~~~ll~l~gv~~~~~~~~--~~~~~~i~li~~~~~la~al~~tGl~~ria~~ 199 (562)
..+.+++.++++|+.|++ |..+.++++..++.++|+.+++|+.+ +++|+++++++++++++.+++|+|+.||++++
T Consensus 3 ~~l~i~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~g~~~~~~~~~~~~~~~~~l~~~~g~~ii~~~l~~tGl~~~ia~~ 82 (429)
T TIGR00935 3 LAGAIFLLTYVLVIWQPVGLTIGASASSGAALAILAGVVSRPDIPTVWGIVWNATATFFAVIIISLILDETGFFEWAAVH 82 (429)
T ss_pred HHHHHHHHHHHHHHheecchHHHHHHHHHHHHHHHHhcCCHHHHHHHHhhchhHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 568899999999999987 55555666667788899999998753 68999999999999999999999999999999
Q ss_pred HHHHhCCChhhHHHHHHHHHHHhhhcCCChhhhhhHhHHHHHHHHHHHcCCCCCCCCcchhhhHHHHHhHHhhhhhcccc
Q 008532 200 FVKWLGKSTLGLSYGLTFSEALIAPAMPSTTARAGGVFLPIIKSLSLSAGSKPGDSSSKKLGSYLIQSQFQSAGNSSALF 279 (562)
Q Consensus 200 i~~~~g~~~~~l~~~l~l~~~~ls~~~~s~~a~~~~i~~Pi~~~i~~~~g~~p~~~~~~~~~~~l~l~~~~~~~~~g~~t 279 (562)
+.++.|++++++.+.++..+.+++.+++|+++. +++.|++..++++.|.+|+ + .++...+++++||..|
T Consensus 83 l~~~~~~~~~~l~~~~~~~~~~ls~~~~n~~~~--~i~~Pi~~~l~~~~~~~~~--------~-~~~~~~~~a~~gg~~t 151 (429)
T TIGR00935 83 AYRLSNGRGWLLFTFICLLGAVVSAFFANDGAA--LILTPIVIAMCEVLGFNPR--------T-ILAFVVAAGFIADTAS 151 (429)
T ss_pred HHHHhCCChHHHHHHHHHHHHHHHHHHccchhh--hhHHHHHHHHHHHhCCCCc--------c-hHHHHHHHHHHhhHHh
Confidence 999999899999999999999999999888765 6999999999999999874 1 3456778899999999
Q ss_pred cccchhHHHHHHHHHHcCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCChhHHHHHHhhhcCCCCHHH-
Q 008532 280 LTAAAQNLLCLKLAEELGVIISSPWVSWFKAACVPALVALLATPLILYKLYPPEVKDTPDAPAMAAKKLKQLGPVTRNE- 358 (562)
Q Consensus 280 ~~g~~~n~i~~g~~~~~G~~i~~~~~~w~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~e- 358 (562)
|+|+++|.+..+..++ ++++ |.||+++++|++++.+++.+++.++.+|+|.++..+.+ ++.++.++.++++
T Consensus 152 ~iG~~~n~i~~~~~~~--~~i~--f~~f~~~~~p~~l~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 223 (429)
T TIGR00935 152 LPLIVSNLVNIVSADY--FGLG--FAEYTSHMLPGNILVLVATLLVLRLYFRNDIPKVYDLE----LLLAPKYAIKDPAL 223 (429)
T ss_pred cCCCCchhhhhhcccc--cCCC--HHHHHHHHhHHHHHHHHHHHHHHHHHHHccCCcccchh----hccCccccccCHHH
Confidence 9999999998765332 4688 99999999999999988888888888887754432211 1112223344444
Q ss_pred -HHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHH----hCCcChHHHhhccCChhHHHHHHHHHHHHHHHHHhCHH
Q 008532 359 -WIMVGTMLLAVSLWIFGDALGIPSVVAAMIGLSILLL----LGVLDWDDCLSEKSAWDTLAWFAVLVGMAGQLTNLGIV 433 (562)
Q Consensus 359 -~~~l~i~~~~i~l~i~~~~~gi~~~~vall~~~ll~~----~gvl~~~~~~~~~i~w~~l~l~~~~~~l~~~l~~tGi~ 433 (562)
++.+.++++++.+|.+++.++++....+..++.++.. .|+.||||..+ ++||+++++++|++.++.+++++|+.
T Consensus 224 ~~~~~~v~~~~i~~~~~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~-~i~w~~l~~~~g~f~l~~~l~~tG~~ 302 (429)
T TIGR00935 224 FKKCWIVLVFLLVGFFVLEFLGIPVSAIAWIAALGAIALAILADAIDTEKVLR-GAPWQIVLFSAGMYLVVEGLKNLGLT 302 (429)
T ss_pred HHHHHHHHHHHHHHHHHhccccCchHHHHHHHHHHHHHHHHhcCCCCHHHHHH-hCCcHHHHHHHHHHHHHHHHHHCCHH
Confidence 5667788888999999888888876666655544332 47899999865 69999999999999999999999999
Q ss_pred HHHHHHHHHhhccCCCchHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHH--cCCCHHHHHHHHHHHHhhhhhh
Q 008532 434 TWMSDSVAKCLQSFSLSWPAAFGVLQASYFLIHYLFASQTGHVGALYSAFLAMHLA--AGVPGVLAALALAYNTNLFGAI 511 (562)
Q Consensus 434 ~~ia~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~f~S~~a~~~il~Pi~~~la~~--~Gv~p~~~~l~l~~~~~~~~~~ 511 (562)
+|+++.+ +..++.+ ...... .........+++.||++ .+.|++.+++++ .|.||....++++++++.++++
T Consensus 303 ~~la~~~-~~~~~~~--~~~~~~-~~~~~~~~ls~~~sN~~---~~~pi~~~i~~~~~~g~~~~~~~~~l~~~~~~gg~~ 375 (429)
T TIGR00935 303 EYLGGIL-NVLEDRG--LWAAIL-GTGFVSAFLSSIMNNMP---TMLVGALSIDQSSATGLPKEPMVYANVIGADLGPKI 375 (429)
T ss_pred HHHHHHH-HHHhcCC--HHHHHH-HHHHHHHHHHHHHccHH---HHHHHHHHHhhccccccchhHHHHHHHHHHhcCccc
Confidence 9999954 4444332 222221 22222233456889988 479999999864 5899998888999998877899
Q ss_pred ccccchhhHHhhc----CCC-CCHHHHHHHhHHHHHHHHHHHHHHHH
Q 008532 512 THYSSGQAAVYYG----AGY-IDLPDVFKMGFTMALVNAIIWGVTGT 553 (562)
Q Consensus 512 tP~~s~~n~i~~~----~g~-i~~~d~~k~g~~~~li~~vi~~~v~~ 553 (562)
||+++++|.+.++ .|| ++++|++|+|+|.+++..++.....+
T Consensus 376 tp~gs~anli~~~~~~~~g~~~~~~df~k~g~~~~~~~~~i~~~~l~ 422 (429)
T TIGR00935 376 TPIGSLATLLWLHVLEQKGYKISWGYYFRTGIPMTIPVLFVTLAYLL 422 (429)
T ss_pred CccccHHHHHHHHHHHHCCccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998765 455 78999999999999999988765543
|
|
| >cd01116 P_permease Permease P (pink-eyed dilution) | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-43 Score=372.81 Aligned_cols=396 Identities=21% Similarity=0.255 Sum_probs=332.8
Q ss_pred HHHHHHHHhhcCCChHHHHHHHHHHHHHhcCCC----hHHHHHhccchHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHh
Q 008532 129 FLSTIAGLVLSPLPVGAWAFLGLTTSIVTRTLA----FPTAFAAFTNEVIWLIVISFFFARGFVKTGLGDRIATYFVKWL 204 (562)
Q Consensus 129 ~~~~i~lw~~~~~p~~~~all~~~ll~l~gv~~----~~~~~~~~~~~~i~li~~~~~la~al~~tGl~~ria~~i~~~~ 204 (562)
|++++++|++|++|.+++++++..++.++|+.+ +||++++++|++++++++.+.++++++|+|+.||+++++.++.
T Consensus 1 ~~~~~~~~~~~~~p~~~~a~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~tG~~~~la~~~~~~~ 80 (413)
T cd01116 1 FIITYALIIFEKVHRTVAALAGALWLVILGLATLSPDLETIVSWVDWETLALLLGMMIIVSILSETGVFEYLAIWAVKIS 80 (413)
T ss_pred ChHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHccHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHh
Confidence 467899999999999999999999999999999 9999999999999999999999999999999999999999998
Q ss_pred CCChhhHHHHHHHHHHHhhhcCCChhhhhhHhHHHHHHHHHHHcCCCCCCCCcchhhhHHHHHhHHhhhhhcccccccch
Q 008532 205 GKSTLGLSYGLTFSEALIAPAMPSTTARAGGVFLPIIKSLSLSAGSKPGDSSSKKLGSYLIQSQFQSAGNSSALFLTAAA 284 (562)
Q Consensus 205 g~~~~~l~~~l~l~~~~ls~~~~s~~a~~~~i~~Pi~~~i~~~~g~~p~~~~~~~~~~~l~l~~~~~~~~~g~~t~~g~~ 284 (562)
++++..+.+.+++++.+++.+.+|+++. .++.|++.+++++.|.+|. .+++.+.++++.++..+|+|++
T Consensus 81 ~~~~~~~~~~~~~~~~~ls~~~s~~~~~--~i~~pi~~~i~~~~g~~~~---------~~~~~~~~~a~~g~~~tp~g~~ 149 (413)
T cd01116 81 KGRPWRLLLLLGLLTAFLSAFLDNVTTV--LLMVPVTIRLCEVLGLNPV---------PVLISEVIAANIGGAATLIGDP 149 (413)
T ss_pred CCChhHHHHHHHHHHHHHHHHHhhHHHH--HHHHHHHHHHHHHcCCCCc---------cHHHHHHHHHHccchhhccCCc
Confidence 8888888999999999999999887765 5999999999999999873 3667788889999999999999
Q ss_pred hHHHHHHHHHHcCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCChhHHHHHHhhhcCCCCHHH--HHHH
Q 008532 285 QNLLCLKLAEELGVIISSPWVSWFKAACVPALVALLATPLILYKLYPPEVKDTPDAPAMAAKKLKQLGPVTRNE--WIMV 362 (562)
Q Consensus 285 ~n~i~~g~~~~~G~~i~~~~~~w~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~e--~~~l 362 (562)
+|.++.+ +.+++ +.||++.+.|.+++..+..+++.++.+|+|.++.++.++ ..+|.+++++.++++ +...
T Consensus 150 ~n~~~~~-----~~~i~--~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 221 (413)
T cd01116 150 PNIMIGS-----AAGLT--FNDFLLHMLPSVVLALVVTFILLYFLYRNILKAREEDVL-ALAELEPKYPIKDKVLLLKSL 221 (413)
T ss_pred hhhhhhc-----cCCCC--HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcccchhHH-HhhccccccccCcHHHHHHHH
Confidence 9998654 34588 999999999999998888888888878877654332211 123344444455443 4556
Q ss_pred HHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHhCCc-ChHHHhhccCChhHHHHHHHHHHHHHHHHHhCHHHHHHHHHH
Q 008532 363 GTMLLAVSLWIFGDALGIPSVVAAMIGLSILLLLGVL-DWDDCLSEKSAWDTLAWFAVLVGMAGQLTNLGIVTWMSDSVA 441 (562)
Q Consensus 363 ~i~~~~i~l~i~~~~~gi~~~~vall~~~ll~~~gvl-~~~~~~~~~i~w~~l~l~~~~~~l~~~l~~tGi~~~ia~~l~ 441 (562)
.++..++..|.+++.++++...+++++..++...+.. ++||..+ +++|+++++++|++.++.+++++|..|++++.+.
T Consensus 222 ~i~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~i~w~~l~~~~g~~~l~~~l~~tG~~~~la~~l~ 300 (413)
T cd01116 222 TILTLVIIGFVLHSPLGVSLGWIALLGALLLLLLADKLDFEDVLS-RVEWDTLLFFAGLFVLVGGLEELGIIEWIAELLV 300 (413)
T ss_pred HHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHcCCCCHHHHHH-hCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 6778888889988877788999999999999988886 9999875 7999999999999999999999999999999999
Q ss_pred HhhccCCCchHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhhhhhccccchhhHH
Q 008532 442 KCLQSFSLSWPAAFGVLQASYFLIHYLFASQTGHVGALYSAFLAMHLAAGVPGVLAALALAYNTNLFGAITHYSSGQAAV 521 (562)
Q Consensus 442 ~~~~~~~~~~~~~~~~l~~~~~~~~~~f~S~~a~~~il~Pi~~~la~~~Gv~p~~~~l~l~~~~~~~~~~tP~~s~~n~i 521 (562)
+..++.+ +. .+.... ......++|.||++++.++.|+..+++++.|.||....+.++++++.+++++|+++++|.+
T Consensus 301 ~~~~~~~--~~-~~~~~~-~~~~~~s~f~sn~~~~~~~~pi~~~~~~~~~~~~~~~~~~~~~~a~~g~~~tp~gs~~n~i 376 (413)
T cd01116 301 GVILGRI--AV-AVILIL-WISALLSAFIDNIPVTATMIPIVKDLASQLGIPLLPLWWALALGACLGGNGTLIGASANVV 376 (413)
T ss_pred HHhCCCh--HH-HHHHHH-HHHHHHHHHHccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHhcccccccccchHHHH
Confidence 9876532 22 222222 2223345689999999999999999999999999999999999998778999999999998
Q ss_pred hhcCC-----CCCHHHHHHHhHHHHHHHHHHH
Q 008532 522 YYGAG-----YIDLPDVFKMGFTMALVNAIIW 548 (562)
Q Consensus 522 ~~~~g-----~i~~~d~~k~g~~~~li~~vi~ 548 (562)
.++.+ +++++||+|+|.+..++..+..
T Consensus 377 ~~~~~~~~g~~~~~~~~~~~g~~~~i~~~~~~ 408 (413)
T cd01116 377 AAGIAEQHGYKISFWEFLKVGFPIMLVSLILA 408 (413)
T ss_pred HHHHHHHcCCCccHHHHHHHHHHHHHHHHHHH
Confidence 87542 3899999999999998877554
|
Mutations in the human melanosomal P gene were responsible for classic phenotype of oculocutaneous albinism type 2 (OCA2). Although the precise function of the P protein is unknown, it was predicted to regulate the intraorganelle pH, together with the ATP-driven proton pump. It shows significant sequence similarity to the Na+/H+ antiporter NhaD from Vibrio parahaemolyticus. Both proteins belong to ArsB/NhaD superfamily of permeases that translocate sodium, arsenate, sulfate, and organic anions across biological membranes in all three kingdoms of life. A typical ArsB/NhaD permease contains 8-13 transmembrane domains. |
| >PRK15445 arsenical pump membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-42 Score=369.79 Aligned_cols=410 Identities=16% Similarity=0.148 Sum_probs=325.2
Q ss_pred HHHHHHHHHHHHHhhcC--CChHHHHHHHHHHHHHhcCCChHHHHH--hccchHHHHHHHHHHHHHHHHHhCHHHHHHHH
Q 008532 124 QLLSIFLSTIAGLVLSP--LPVGAWAFLGLTTSIVTRTLAFPTAFA--AFTNEVIWLIVISFFFARGFVKTGLGDRIATY 199 (562)
Q Consensus 124 ~~l~i~~~~i~lw~~~~--~p~~~~all~~~ll~l~gv~~~~~~~~--~~~~~~i~li~~~~~la~al~~tGl~~ria~~ 199 (562)
..+.+++.++++|.+++ +|..++++++..++.++|+.+++|+++ ++.|+++++++|+++++.+++|+|+.||++++
T Consensus 2 ~~l~i~~~~~~~~~~~~~~ip~~~~all~~~ll~~~gv~~~~~a~~~~~~~~~~i~l~~g~~vi~~~l~~tGl~~~ia~~ 81 (427)
T PRK15445 2 LAIAIFLLTLVLVIWQPKGLGIGWSALLGAVLALLTGVVSLGDVPVVWGIVWNATLTFIAIIIISLLLDEAGFFEWAALH 81 (427)
T ss_pred HHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 35788899999999988 999999999999999999999999996 68899999999999999999999999999999
Q ss_pred HHHHhCCChhhHHHHHHHHHHHhhhcCCChhhhhhHhHHHHHHHHHHHcCCCCCCCCcchhhhHHHHHhHHhhhhhcccc
Q 008532 200 FVKWLGKSTLGLSYGLTFSEALIAPAMPSTTARAGGVFLPIIKSLSLSAGSKPGDSSSKKLGSYLIQSQFQSAGNSSALF 279 (562)
Q Consensus 200 i~~~~g~~~~~l~~~l~l~~~~ls~~~~s~~a~~~~i~~Pi~~~i~~~~g~~p~~~~~~~~~~~l~l~~~~~~~~~g~~t 279 (562)
+.++.+++++++...+++.+.+++.+++|+++. +++.|++.+++++.|.||++ . ...++..+++++.++..+
T Consensus 82 ~~~~~~~~~~~l~~~~~~~~~~ls~~~sn~~~~--~i~~Pi~~~i~~~~g~~~~~----~--~~~~~~~~~~a~~~~~~~ 153 (427)
T PRK15445 82 VARWAKGNGRKLFVYIVLLGAAVAALFANDGAA--LILTPIVLAMLLALGFSKKA----T--LAFVMAAGFIADTASLPL 153 (427)
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHHhhHHHH--HHHHHHHHHHHHHcCCCccc----c--hHHHHHHHHHhccccccc
Confidence 999998888889999999999999999888755 69999999999999998741 1 235566777888888889
Q ss_pred cccchhHHHHHHHHHHcCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCChhHHHHHHhhhcCCCCHHHH
Q 008532 280 LTAAAQNLLCLKLAEELGVIISSPWVSWFKAACVPALVALLATPLILYKLYPPEVKDTPDAPAMAAKKLKQLGPVTRNEW 359 (562)
Q Consensus 280 ~~g~~~n~i~~g~~~~~G~~i~~~~~~w~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~e~ 359 (562)
+.|+++|.+..+. .+++ |.||++++.|++++..++.+.+.++++|+|.++..+ ++..+++.++. +-.++++
T Consensus 154 ~ig~~~N~i~~~~-----~~i~--f~d~~~~~~p~~ii~~~~~~~~~~~~~r~~~~~~~~-~~~~~~~~~~~-~~~~~~~ 224 (427)
T PRK15445 154 VVSNLVNIVSADY-----FGIG--FAEYASVMVPVNLVSLAASLLVLWLYFRKDIPKTYD-LELLKEPASAI-KDPALFK 224 (427)
T ss_pred ccCCchHhhhhcc-----CCCC--HHHHHHHHhHHHHHHHHHHHHHHHHHHHhhCCcccc-cccccChhhhc-cCHHHHH
Confidence 9999999886542 3588 999999999999999999898898888876543221 11111111111 1123345
Q ss_pred HHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHh----CCcChHHHhhccCChhHHHHHHHHHHHHHHHHHhCHHHH
Q 008532 360 IMVGTMLLAVSLWIFGDALGIPSVVAAMIGLSILLLL----GVLDWDDCLSEKSAWDTLAWFAVLVGMAGQLTNLGIVTW 435 (562)
Q Consensus 360 ~~l~i~~~~i~l~i~~~~~gi~~~~vall~~~ll~~~----gvl~~~~~~~~~i~w~~l~l~~~~~~l~~~l~~tGi~~~ 435 (562)
....++++++++|...+.++++...++++++.++++. |++++||.. +++||+++++++|++.++.+++++|+.+|
T Consensus 225 ~~~~~~~~~~~~~~~~~~l~i~~~~va~~~a~ll~~~~~~~~~~~~~~~~-~~v~W~~l~~~~g~~~l~~al~~tG~~~~ 303 (427)
T PRK15445 225 LGWIVLALLLVGYFVLEPLGIPVSAIAGVGALILLLVARRGHAINTKKVL-KGAPWQIVIFSLGMYLVVYGLRNAGLTDY 303 (427)
T ss_pred HHHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHhccCCCCHHHHH-HhCChHHHHHHHHHHHHHHHHHHcCHHHH
Confidence 5556666666666767777899999999998888773 689999986 57999999999999999999999999999
Q ss_pred HHHHHHHhhccCCCchHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhhhhhcccc
Q 008532 436 MSDSVAKCLQSFSLSWPAAFGVLQASYFLIHYLFASQTGHVGALYSAFLAMHLAAGVPGVLAALALAYNTNLFGAITHYS 515 (562)
Q Consensus 436 ia~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~f~S~~a~~~il~Pi~~~la~~~Gv~p~~~~l~l~~~~~~~~~~tP~~ 515 (562)
+++.+.+. .+.+ +. .............++|+||++++.+ .|+....++..|.++..+.++++++++.+++.||.+
T Consensus 304 la~~l~~~-~~~~--~~-~~~~~~~~~s~~lS~~~sN~p~~~~-~~~~i~~~~~~~~~~~~l~~al~~ga~~gg~~T~iG 378 (427)
T PRK15445 304 LAGVLNYL-ADQG--LF-AATLGTGFLAAFLSSVMNNMPTVLI-GALAIDGSNATGVIKEAMIYANVIGSDLGPKITPIG 378 (427)
T ss_pred HHHHHHHh-cCCC--HH-HHHHHHHHHHHHHHHHhccHHHHHH-HHHHHHhccCCcchHHHHHHHHHHhcccCcccchhh
Confidence 99999764 3322 22 2222222222445579999999886 455555566678888888888899999777999999
Q ss_pred chhhHHhh---cCCC--CCHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 008532 516 SGQAAVYY---GAGY--IDLPDVFKMGFTMALVNAIIWGVTGTFWW 556 (562)
Q Consensus 516 s~~n~i~~---~~g~--i~~~d~~k~g~~~~li~~vi~~~v~~~~w 556 (562)
+++|.+.. +.++ ++++||.|+|++.+++.+++.....+.-|
T Consensus 379 s~an~i~~~~~~~~g~~i~f~~f~k~G~~~~~~~~~~~~~~l~~~~ 424 (427)
T PRK15445 379 SLATLLWLHVLAQKGVKISWGYYFKVGIIITLPVLLVTLLALALRL 424 (427)
T ss_pred hHHHHHHHHHHHHCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999654 2332 67999999999999999988776654433
|
|
| >cd01118 ArsB_permease Anion permease ArsB | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-41 Score=359.89 Aligned_cols=396 Identities=16% Similarity=0.162 Sum_probs=310.5
Q ss_pred HHHHHHHHHHHHhhcC--CChHHHHHHHHHHHHHhcCCChHHHHHhc--cchHHHHHHHHHHHHHHHHHhCHHHHHHHHH
Q 008532 125 LLSIFLSTIAGLVLSP--LPVGAWAFLGLTTSIVTRTLAFPTAFAAF--TNEVIWLIVISFFFARGFVKTGLGDRIATYF 200 (562)
Q Consensus 125 ~l~i~~~~i~lw~~~~--~p~~~~all~~~ll~l~gv~~~~~~~~~~--~~~~i~li~~~~~la~al~~tGl~~ria~~i 200 (562)
.+.++++++++|++++ +|..++++++..++.++|++++||+++++ +|++++++++++.++++++|+|+.||+++++
T Consensus 2 ~l~i~~~~i~l~~~~~~~i~~~~~al~~~~ll~~~gv~~~~~~~~~~~~~~~~i~~~~g~~~i~~~l~~tGl~~~ia~~l 81 (416)
T cd01118 2 AIAIFVLTLVLVIWRPFGLPEAVWAVLGAVIALILGLVSPHDALEVWGIVWDVTLTLIGVILLSLLLDEEGFFEWVAALA 81 (416)
T ss_pred HHHHHHHHHHHHHHccCCCChHHHHHHHHHHHHHHCCCCHHHHHHHHhcchhHHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 5788999999999985 89999999999999999999999999975 4999999999999999999999999999999
Q ss_pred HHHhCCChhhHHHHHHHHHHHhhhcCCChhhhhhHhHHHHHHHHHHHcCCCCCCCCcchhhhHHHHHhHHhhhhhccccc
Q 008532 201 VKWLGKSTLGLSYGLTFSEALIAPAMPSTTARAGGVFLPIIKSLSLSAGSKPGDSSSKKLGSYLIQSQFQSAGNSSALFL 280 (562)
Q Consensus 201 ~~~~g~~~~~l~~~l~l~~~~ls~~~~s~~a~~~~i~~Pi~~~i~~~~g~~p~~~~~~~~~~~l~l~~~~~~~~~g~~t~ 280 (562)
.++.+++++++.+.+++++.+++.+++|+++. .++.|++.+++++.|.+|++ + ...++...++++.++..+|
T Consensus 82 ~~~~~~~~~~l~~~~~~~~~~ls~~~sn~a~~--~~~~Pi~~~i~~~~g~~~~~----~--~~~l~~~~~~a~~g~~~tp 153 (416)
T cd01118 82 ARWARGSGRKLFTLIVLLGAAVTAFFANDGTA--LILTPIVIALLRALGAKKNR----T--LPFLYACAFIADAASLPLP 153 (416)
T ss_pred HHHhCCChHHHHHHHHHHHHHHHHHHhhHHHH--HHHHHHHHHHHHHcCCCccc----c--cHHHHHHHHHHcccccccc
Confidence 99988888899999999999999999777654 59999999999999998741 1 2344556678888999999
Q ss_pred ccchhHHHHHHHHHHcCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCChhHHHHHHhhhcCCCCHHHHH
Q 008532 281 TAAAQNLLCLKLAEELGVIISSPWVSWFKAACVPALVALLATPLILYKLYPPEVKDTPDAPAMAAKKLKQLGPVTRNEWI 360 (562)
Q Consensus 281 ~g~~~n~i~~g~~~~~G~~i~~~~~~w~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~e~~ 360 (562)
+|+++|.+.++. + +++ +.||+++++|++++..++.+++.++++|+|.++..+.++. + + ++.+.+|++
T Consensus 154 ig~~~n~i~~~~----~-~i~--~~~~~~~~~p~~li~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~--~~~~~~~~~ 220 (416)
T cd01118 154 ISNLVNIVTAGY----F-GIG--FTEYAALMFLPSIVSILATYVVLYLFFRRALPKRLETASV-K---K--PSLAIKDPL 220 (416)
T ss_pred cCCchHHHhHhc----c-CCC--HHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcccccccccc-c---C--ccccccchH
Confidence 999999998763 3 588 9999999999999999988888888888765433221110 0 1 112222322
Q ss_pred ----HHHHHHHHHHHHHhcCCCCCChHHHH-HHHHHHHHHhC---CcChHHHhhccCChhHHHHHHHHHHHHHHHHHhCH
Q 008532 361 ----MVGTMLLAVSLWIFGDALGIPSVVAA-MIGLSILLLLG---VLDWDDCLSEKSAWDTLAWFAVLVGMAGQLTNLGI 432 (562)
Q Consensus 361 ----~l~i~~~~i~l~i~~~~~gi~~~~va-ll~~~ll~~~g---vl~~~~~~~~~i~w~~l~l~~~~~~l~~~l~~tGi 432 (562)
.+.+++..+..+...+.++.++...+ ++++.++.+.+ .+++||..+ ++||+++++++|.+.++++++++|+
T Consensus 221 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~v~w~~ll~f~g~f~l~~al~~tG~ 299 (416)
T cd01118 221 LFGLAWTLLVLLVVSAFGVDILLIPPSFIAGVLALIFLLLARRGGAINPLKVLK-EAPWGVLLFSLGLYVVVFGLKNAGL 299 (416)
T ss_pred HHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHcCCCCCCHHHHHH-hCCHHHHHHHHHHHHHHHHHHHcCH
Confidence 23333334445555555555555444 45555555554 459999875 6999999999999999999999999
Q ss_pred HHHHHHHHHHhhccCCCchHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhhhhhc
Q 008532 433 VTWMSDSVAKCLQSFSLSWPAAFGVLQASYFLIHYLFASQTGHVGALYSAFLAMHLAAGVPGVLAALALAYNTNLFGAIT 512 (562)
Q Consensus 433 ~~~ia~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~f~S~~a~~~il~Pi~~~la~~~Gv~p~~~~l~l~~~~~~~~~~t 512 (562)
.+|+++.+.+..++ + .. .............++|+||.+.+.++.|+..+ |.||......+.++++.++++|
T Consensus 300 ~~~l~~~l~~~~~~-~--~~-~~~~~~~~~~~vls~~isNvp~~~l~~p~~~~-----~~~~~~~~~~l~~g~~~gg~~t 370 (416)
T cd01118 300 TAILADLLNWLVSQ-G--LL-AAILGVGLLAAFLSNVMNNLPAVLIGALALAA-----GHAPEALVYANLIGVDLGPKLT 370 (416)
T ss_pred HHHHHHHHHHHcCC-C--HH-HHHHHHHHHHHHHHHHHccHHHHHHHHHHHhc-----ccccHHHHHHHHHhcccCcccc
Confidence 99999999886542 2 12 22222222334456799999999999998776 6778777778889888778999
Q ss_pred cccchhhHHhhc----C-CCCCHHHHHHHhHHHHHHHHHHHHHH
Q 008532 513 HYSSGQAAVYYG----A-GYIDLPDVFKMGFTMALVNAIIWGVT 551 (562)
Q Consensus 513 P~~s~~n~i~~~----~-g~i~~~d~~k~g~~~~li~~vi~~~v 551 (562)
|.++++|.+.++ . ++++++|+.|+|+|.++.++++....
T Consensus 371 ~~gs~an~i~~~~~~~~~~~~~~~~f~k~g~~~~~~~l~~~~~~ 414 (416)
T cd01118 371 PIGSLATLLWLHVLRRKGIRVSWGYYLKVGLIVTPPVLVVTLAA 414 (416)
T ss_pred hHHHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999988543 2 45899999999999999998876543
|
These permeases have been shown to export arsenate and antimonite in eubacteria and archaea. A typical ArsB permease contains 8-13 transmembrane helices and can function either independently as a chemiosmotic transporter or as a channel-forming subunit of an ATP-driven anion pump (ArsAB). The ArsAB complex is similar in many ways to ATP-binding cassette transporters, which have two groups of six transmembrane-spanning helical segments and two nucleotide-binding domains. The ArsB proteins belong to the ArsB/NhaD superfamily of permeases that translocate sodium, arsenate, sulfate, and organic anions across biological membranes in all three kingdoms of life. |
| >KOG1281 consensus Na+/dicarboxylate, Na+/tricarboxylate and phosphate transporters [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-39 Score=338.03 Aligned_cols=424 Identities=19% Similarity=0.214 Sum_probs=351.5
Q ss_pred HHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhcCCChHHHHHhccchHHHHHHHHHHHHHHHHHhCHHHHHHHHH
Q 008532 121 QAWQLLSIFLSTIAGLVLSPLPVGAWAFLGLTTSIVTRTLAFPTAFAAFTNEVIWLIVISFFFARGFVKTGLGDRIATYF 200 (562)
Q Consensus 121 ~~~~~l~i~~~~i~lw~~~~~p~~~~all~~~ll~l~gv~~~~~~~~~~~~~~i~li~~~~~la~al~~tGl~~ria~~i 200 (562)
+|.+++.....+-..|++|.+|..+++++...+..+.|+++.+|+-..+-+|+..++.+..+++.+.|++++++|++.++
T Consensus 40 ~e~~c~y~~~vm~~yw~~Ealpl~vtal~p~~l~p~~gi~~s~eva~~yf~d~~~l~~~~l~~A~AvE~~~Lh~riaL~~ 119 (586)
T KOG1281|consen 40 EEARCAYVILVMAVYWVTEALPLAVTALLPIVLFPFFGIVRSNEVANEYFKDTNLLFLGGLIMALAVEKCNLHKRIALKV 119 (586)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHhcCccHHHHHHHHHhhhhHHHhhhHHHHHHHHHhhhhHHHHHHH
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCChhhHHHHHHHHHHHhhhcCCChhhhhhHhHHHHHHHHHHHcCCCCC---------------------------
Q 008532 201 VKWLGKSTLGLSYGLTFSEALIAPAMPSTTARAGGVFLPIIKSLSLSAGSKPG--------------------------- 253 (562)
Q Consensus 201 ~~~~g~~~~~l~~~l~l~~~~ls~~~~s~~a~~~~i~~Pi~~~i~~~~g~~p~--------------------------- 253 (562)
.+..|.+|..+.++++..+.++++|++|+..+ ++|.|++.++.+++....+
T Consensus 120 ~~~vg~~P~~l~lg~m~~taflsmwisntA~t--amm~pi~~avL~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~vp~ 197 (586)
T KOG1281|consen 120 LRKVGVEPARLMLGFMGVTAFLSMWISNTATT--AMMIPIATAVLQELPSFNDEEQHRMLESVSHLWAVEAIPTSFLVPL 197 (586)
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHHHHhHHHH--HHHHHHHHHHHHHhcccchhhhhhhHHHhhcchhhhcCCcccCCcc
Confidence 99999999999999999999999999888765 6999999999887654100
Q ss_pred ---------CC-----Cc--------------chhhhHHHHHhHHhhhhhcccccccchhHHHHHHHHHH----cCCccc
Q 008532 254 ---------DS-----SS--------------KKLGSYLIQSQFQSAGNSSALFLTAAAQNLLCLKLAEE----LGVIIS 301 (562)
Q Consensus 254 ---------~~-----~~--------------~~~~~~l~l~~~~~~~~~g~~t~~g~~~n~i~~g~~~~----~G~~i~ 301 (562)
++ ++ ..+.+.+.+++++++.+||..+.+|+++|.+..+..+. .....+
T Consensus 198 ~~v~~~~~~~~~g~~~~~~~~~i~~~~~s~~~~~~~~g~~L~ia~Sa~igg~~titGT~pnlVll~~~~~~fp~s~~~~N 277 (586)
T KOG1281|consen 198 LTVFFPILKDETGKPMSPTSSSILSTMWSSTIMLLLKGFTLGIAYSAYIGGTLTITGTAPNLVLLGNMNVRFPLSMWVSN 277 (586)
T ss_pred hhhcccccCCccCCCCCcchhhhhhhccchHHHHHHHHHHHHHHHHHhhcchhhhcCCCccHHHHHHHHHhccccccccc
Confidence 00 00 01457788999999999999999999999999887765 122367
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhcC-----CCC-----C-CCCC---hhHHHHHHhhhcCCCCHHHHHHHHHHHH
Q 008532 302 SPWVSWFKAACVPALVALLATPLILYKLYP-----PEV-----K-DTPD---APAMAAKKLKQLGPVTRNEWIMVGTMLL 367 (562)
Q Consensus 302 ~~~~~w~~~~~~~~li~~~~~~~~~~~~~~-----~~~-----~-~~~~---~~~~~~~~~~~~g~~t~~e~~~l~i~~~ 367 (562)
+..|+.+++|+.+..+.+.+.+...++- ++. + +.++ .++.+++++++.|+++..|+.+.++|++
T Consensus 278 --f~swl~Fs~ppmL~~L~~~w~~l~~lflG~~~~~~~~~~~s~~~s~q~~~a~~~i~~~y~~lG~~~~~e~~v~ilfil 355 (586)
T KOG1281|consen 278 --FASWLFFSFPPMLRYLLASWPFLQALFLGIALAANIGGMSSPISSPQNIVAKKVIKPEYDGLGPMFFAEKPVFILFIL 355 (586)
T ss_pred --hHHHHHHhhHHHHHHHHHHHHHHHHHHhhhHhhhhhcCCCCCcCChHHHHHHHHhhHhhcccccchHHHHHHHHHHHH
Confidence 9999999999999998888876654431 110 1 1111 2345677788999999999999999999
Q ss_pred HHHHHHhcCCC-----------C--CChHHHHHHHHHHHHHh----------------------CCcChHHHhhccCChh
Q 008532 368 AVSLWIFGDAL-----------G--IPSVVAAMIGLSILLLL----------------------GVLDWDDCLSEKSAWD 412 (562)
Q Consensus 368 ~i~l~i~~~~~-----------g--i~~~~vall~~~ll~~~----------------------gvl~~~~~~~~~i~w~ 412 (562)
.+.+|++.+.. + .....++.+..++++.. |.++|++. +++++|+
T Consensus 356 ~v~lw~tr~p~~~pgw~~~f~~~~~~~d~t~~~~i~ilLf~lps~~~~f~~~~~~~~~p~~~~~~l~~w~~~-q~~fPWs 434 (586)
T KOG1281|consen 356 LVWLWFTRDPGFVPGWGDLFKPGFFQSDSTSVVIITILLFCLPSQIPGFGKSGFIAIIPIVVFFGLGLWKTV-QFTFPWS 434 (586)
T ss_pred HHHHHHhcCCCCccchHhhcCCccceehhhHHHHHHHHhheecccCccccccCcccccccccccCccchhhh-cccCCch
Confidence 99999986532 1 22234455555555431 35789996 5689999
Q ss_pred HHHHHHHHHHHHHHHHHhCHHHHHHHHHHHhhccCCCchHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHcCC
Q 008532 413 TLAWFAVLVGMAGQLTNLGIVTWMSDSVAKCLQSFSLSWPAAFGVLQASYFLIHYLFASQTGHVGALYSAFLAMHLAAGV 492 (562)
Q Consensus 413 ~l~l~~~~~~l~~~l~~tGi~~~ia~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~f~S~~a~~~il~Pi~~~la~~~Gv 492 (562)
++++.+|+++++++.+++|+.+|+++.+.+ +++.+. ..+.++..+..+..+.|.||++++.+++|++.++++++|.
T Consensus 435 IvlLlgGGfALakgv~sSGLs~~I~~~L~~-l~~~p~---~~i~li~~ll~~v~TeF~Sntata~IfiPIl~ela~~l~~ 510 (586)
T KOG1281|consen 435 IVLLLGGGFALAKGVSSSGLSSLIGNALKP-LESLPV---FAILLIFSLLILVVTEFVSNTATASIFIPILAELAEALGI 510 (586)
T ss_pred HhhhhccchhhhhhcccccHHHHHHHhhhh-cccCCh---HHHHHHHHHHHHHHHHHhcchhheeehHHhHHHHHHhcCC
Confidence 999999999999999999999999999999 777652 2233333333456678999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhhhhhccccchhhHHhhcCCCCCHHHHHHHhHHHHHHHHHHHHHHHHH
Q 008532 493 PGVLAALALAYNTNLFGAITHYSSGQAAVYYGAGYIDLPDVFKMGFTMALVNAIIWGVTGTF 554 (562)
Q Consensus 493 ~p~~~~l~l~~~~~~~~~~tP~~s~~n~i~~~~g~i~~~d~~k~g~~~~li~~vi~~~v~~~ 554 (562)
||..+.++.+++++ +++++|.+++||+++++.|+.+.+|+.|.|..+++.+.++..+..-.
T Consensus 511 hplyl~lp~tl~~S-fAf~LPvstpPNaivfs~~~~k~~dm~~~G~~l~i~~~a~l~~~m~t 571 (586)
T KOG1281|consen 511 HPLYLMLPTTLACS-FAFMLPVSTPPNAIVFSMGDIKGKDMLKVGLFLNIGGPAILLLFMNT 571 (586)
T ss_pred CCceeehhHHHHHH-HHHhcCCCCCCCeEEEeecccchhhHhhhccchhHHHHHHHHHHHHH
Confidence 99999999999997 89999999999999999999999999999999999988776655433
|
|
| >cd00625 ArsB_NhaD_permease Anion permease ArsB/NhaD | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-38 Score=337.77 Aligned_cols=385 Identities=23% Similarity=0.261 Sum_probs=296.2
Q ss_pred HHHhhcCCChHHHHHHHHHHHHHhcCCChHHHHHhccchHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhCCChhhHHH
Q 008532 134 AGLVLSPLPVGAWAFLGLTTSIVTRTLAFPTAFAAFTNEVIWLIVISFFFARGFVKTGLGDRIATYFVKWLGKSTLGLSY 213 (562)
Q Consensus 134 ~lw~~~~~p~~~~all~~~ll~l~gv~~~~~~~~~~~~~~i~li~~~~~la~al~~tGl~~ria~~i~~~~g~~~~~l~~ 213 (562)
++|++|++|.+++++++..++.++|+.++||+++++.|++++++++++.++++++|+|+.||+++++.++.++++.. ..
T Consensus 2 ilw~~~~~~~~~~al~~~~~l~~~g~~~~~~~~~~~~~~~i~~~~g~~~l~~~l~~tG~~~~ia~~l~~~~~~~~~~-~~ 80 (396)
T cd00625 2 VLIRPEKLPRAVVALLGAVLLVLLGVVSPKEALSAIDWETILLLFGMMILSAALEETGLFDRLAAKLARASKGSRRL-LL 80 (396)
T ss_pred EEEEcCcCCHHHHHHHHHHHHHHhcCCCHHHHHHHcCHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHhCCCchH-HH
Confidence 46999999999999999999999999999999999999999999999999999999999999999999888777766 66
Q ss_pred HHHHHHHHhhhcCCChhhhhhHhHHHHHHHHHHHcCCCCCCCCcchhhhHHHHHhHHhhhhhcccccccchhHHHHHHHH
Q 008532 214 GLTFSEALIAPAMPSTTARAGGVFLPIIKSLSLSAGSKPGDSSSKKLGSYLIQSQFQSAGNSSALFLTAAAQNLLCLKLA 293 (562)
Q Consensus 214 ~l~l~~~~ls~~~~s~~a~~~~i~~Pi~~~i~~~~g~~p~~~~~~~~~~~l~l~~~~~~~~~g~~t~~g~~~n~i~~g~~ 293 (562)
.++....+++.+++|+.+ + .++.|++.+++++.|.+|. ..+++...++++.++..+|+|+++|.++.+
T Consensus 81 ~~~~~~~~ls~~~s~~~~-~-~il~Pi~~~~~~~~g~~~~--------~~l~~~~~~~a~~g~~~tp~gs~~n~i~~~-- 148 (396)
T cd00625 81 LLMLLTAALSAFFSNDAT-A-VLLTPIVLALLRKLGLSPP--------VPLLLALAFAANIGGAATPIGNPPNLIIAS-- 148 (396)
T ss_pred HHHHHHHHHHHHHhchhh-h-hhhHHHHHHHHHHhCCCCC--------ccHHHHHHHHHhccccccccCCCCceEEEe--
Confidence 667778888888877664 4 5999999999999998762 246777888899999999999999999876
Q ss_pred HHcCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCChhHH-HHHHhhhcCCCCHHHHHHHHHHHHHHHHH
Q 008532 294 EELGVIISSPWVSWFKAACVPALVALLATPLILYKLYPPEVKDTPDAPAM-AAKKLKQLGPVTRNEWIMVGTMLLAVSLW 372 (562)
Q Consensus 294 ~~~G~~i~~~~~~w~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~t~~e~~~l~i~~~~i~l~ 372 (562)
+.+++ +.||++++.|+.++..++...+.++++|++.++.++.+++ .+++.++.++.+++|+..+.++.+.+..|
T Consensus 149 ---~~~i~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (396)
T cd00625 149 ---LSGLG--FLDFLAFMAPPALGLLLLLLGLLYLLFRKKLLLPDEDKLTVLAEPLPARPLLKKFLLLALLLLLLFVLLF 223 (396)
T ss_pred ---CCCCC--HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhccChhcccccHHHHHHHHHHHHHHHHH
Confidence 23478 9999999999999999888888888888765443322221 23445556667777776666665555555
Q ss_pred HhcCCCCCChHHHHHHHHHHHHHhCC--cChHHHhhccCChhHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHhhccCCCc
Q 008532 373 IFGDALGIPSVVAAMIGLSILLLLGV--LDWDDCLSEKSAWDTLAWFAVLVGMAGQLTNLGIVTWMSDSVAKCLQSFSLS 450 (562)
Q Consensus 373 i~~~~~gi~~~~vall~~~ll~~~gv--l~~~~~~~~~i~w~~l~l~~~~~~l~~~l~~tGi~~~ia~~l~~~~~~~~~~ 450 (562)
..+ ++...++.++.+.+++... ++|||..+ +++|++++++++++.++.+++++|+.+|+++.+.+..++. .
T Consensus 224 ~~~----~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~i~w~~~~~~~~~~~l~~~l~~~G~~~~~a~~~~~~~~~~--~ 296 (396)
T cd00625 224 FFL----IPLGLIALLGALLLLLLLVRGLDPEEVLK-SVDWGTLLFFAGLFVLVGALESTGLLEWLAELLVALVGLP--P 296 (396)
T ss_pred HHH----HhHHHHHHHHHHHHHHHhcCCCCHHHHHH-hCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHhCCC--h
Confidence 443 4555666666665555443 79999865 6999999999999999999999999999999999886522 1
Q ss_pred hHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhhhhhccccchhhHHhhcCC----
Q 008532 451 WPAAFGVLQASYFLIHYLFASQTGHVGALYSAFLAMHLAAGVPGVLAALALAYNTNLFGAITHYSSGQAAVYYGAG---- 526 (562)
Q Consensus 451 ~~~~~~~l~~~~~~~~~~f~S~~a~~~il~Pi~~~la~~~Gv~p~~~~l~l~~~~~~~~~~tP~~s~~n~i~~~~g---- 526 (562)
+ .... .........++|.||+++..++.|++.+++ ++...........+.++.+++.++.+|.+.++..
T Consensus 297 ~-~~~~-~~~~~~~~~s~~~~n~~~~~~~~Pi~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~s~a~~l~~~~~~~~~ 369 (396)
T cd00625 297 L-AALL-LIGLLSALLSNFISNVPTVALLLPIAASLA-----PPEPAWLALALGSTLGGNLTLIGSLANLIPLGAAENAG 369 (396)
T ss_pred H-HHHH-HHHHHHHHHHHHhccHHHHHHHHHHHHHhc-----CchHHHHHHHHHhcccccccccccHHHHHHHHHHHHCC
Confidence 2 2222 222222334578999999999999999875 2322233333444445555666666665554431
Q ss_pred -CCCHHHHHHHhHHHHHHHHHHHHH
Q 008532 527 -YIDLPDVFKMGFTMALVNAIIWGV 550 (562)
Q Consensus 527 -~i~~~d~~k~g~~~~li~~vi~~~ 550 (562)
+++++|++|+|++.+++..++...
T Consensus 370 ~~~~~~~~~k~g~~~~~~~~~~~~~ 394 (396)
T cd00625 370 VGISFGEFLKVGLPLTLLSLVVSLL 394 (396)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHH
Confidence 689999999999999988877543
|
These permeases have been shown to translocate sodium, arsenate, antimonite, sulfate and organic anions across biological membranes in all three kingdoms of life. A typical anion permease contains 8-13 transmembrane helices and can function either independently as a chemiosmotic transporter or as a channel-forming subunit of an ATP-driven anion pump. |
| >cd01117 YbiR_permease Putative anion permease YbiR | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-37 Score=328.07 Aligned_cols=364 Identities=24% Similarity=0.225 Sum_probs=290.0
Q ss_pred CChHHHHHHHHHHHHHhcCCChHHHHHhccchHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhCCChhhHHHHHHHHHH
Q 008532 141 LPVGAWAFLGLTTSIVTRTLAFPTAFAAFTNEVIWLIVISFFFARGFVKTGLGDRIATYFVKWLGKSTLGLSYGLTFSEA 220 (562)
Q Consensus 141 ~p~~~~all~~~ll~l~gv~~~~~~~~~~~~~~i~li~~~~~la~al~~tGl~~ria~~i~~~~g~~~~~l~~~l~l~~~ 220 (562)
.|..++++++..++.++|+.++||++++++|+++++++++++++.+++|+|+.||+++++.++. ++++++.+.+++.+.
T Consensus 11 ~~~~~~a~~~~~ll~~~g~~~~~~~~~~~~~~~i~~~~g~~~l~~~l~~tGl~~~ia~~l~~~~-~~~~~l~~~~~~~~~ 89 (384)
T cd01117 11 LDRWAIALLGAALMLLFGVISLEDAPAAIDLDTIILLFGLMVVSAALELSGFFDALGSRILVKA-GSPRRLLFLLVLLSG 89 (384)
T ss_pred CCHHHHHHHHHHHHHHhCCCCHHHHHHHcCHhHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhc-CCHHHHHHHHHHHHH
Confidence 6899999999999999999999999999999999999999999999999999999999999885 456678889999999
Q ss_pred HhhhcCCChhhhhhHhHHHHHHHHHHHcCCCCCCCCcchhhhHHHHHhHHhhhhhcccccccchhHHHHHHHHHHcCCcc
Q 008532 221 LIAPAMPSTTARAGGVFLPIIKSLSLSAGSKPGDSSSKKLGSYLIQSQFQSAGNSSALFLTAAAQNLLCLKLAEELGVII 300 (562)
Q Consensus 221 ~ls~~~~s~~a~~~~i~~Pi~~~i~~~~g~~p~~~~~~~~~~~l~l~~~~~~~~~g~~t~~g~~~n~i~~g~~~~~G~~i 300 (562)
+++.+++|+++. .++.|++.+++++.|.+|. .+++...++++.|+..+|+|+++|.+..+. + ++
T Consensus 90 ~ls~~~~n~~~~--~~~~Pi~~~l~~~~~~~~~---------~~~~~~~~aa~~g~~~tp~g~~~n~i~~~~----~-~i 153 (384)
T cd01117 90 ILSALLTNDTAC--LVFTPIVLELARVAGLPPI---------PLLLALATAANIGSAATPIGNPQNLLIASE----S-GI 153 (384)
T ss_pred HHHHHHhhHHHH--HHHHHHHHHHHHHcCCCch---------hHHHHHHHHHHcccccccCCCchhhhhhcC----C-CC
Confidence 999999887754 5999999999999998763 467778899999999999999999998653 2 47
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCChhHHHHHHhhhcCCCCHHHHH-HHHHHHHHHHHHHhcCCCC
Q 008532 301 SSPWVSWFKAACVPALVALLATPLILYKLYPPEVKDTPDAPAMAAKKLKQLGPVTRNEWI-MVGTMLLAVSLWIFGDALG 379 (562)
Q Consensus 301 ~~~~~~w~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~e~~-~l~i~~~~i~l~i~~~~~g 379 (562)
+ +.||++.++|++++.+++.+++.++++|++.++.++.++ .++.++.+++|++ ...+++..+..|.... +.
T Consensus 154 ~--~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 225 (384)
T cd01117 154 S--FPFFLAAMAPLALLGLLLLLILLLVLFPGELKGLPLDKA-----TKEEGVGARKLAVKLLVLILLLLVAFLALL-GV 225 (384)
T ss_pred C--HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhcccccccc-----cchhhcccHHHHHHHHHHHHHHHHHHHHHh-Cc
Confidence 8 999999999999999988888888888877544332211 1345566666654 4444444445554432 22
Q ss_pred CChHHHHHHHHHHHHHhCCcChHHHhhccCChhHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHhhccCCCchHHHHHHHH
Q 008532 380 IPSVVAAMIGLSILLLLGVLDWDDCLSEKSAWDTLAWFAVLVGMAGQLTNLGIVTWMSDSVAKCLQSFSLSWPAAFGVLQ 459 (562)
Q Consensus 380 i~~~~vall~~~ll~~~gvl~~~~~~~~~i~w~~l~l~~~~~~l~~~l~~tGi~~~ia~~l~~~~~~~~~~~~~~~~~l~ 459 (562)
.+...++..++++++..+ .++||..+ ++||+++++++|.+.++++++++|..+++++.+... . ....+..
T Consensus 226 ~~~~~~~~~~~~ll~~~~-~~~~~~l~-~i~w~~ll~f~g~f~l~~~l~~~g~~~~~~~~~~~~-~-------~~~~~~~ 295 (384)
T cd01117 226 IPLWTAALVAAVLLLLTR-LKPRRVLK-KVDWGLLLFFAGLFILVGGFAQGLPLEGLSRLLPLL-D-------SVLSLFL 295 (384)
T ss_pred cHHHHHHHHHHHHHHHhc-CCHHHHHH-hCCchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-H-------HHHHHHH
Confidence 345556667777777778 89999875 699999999999999999999999999998877641 1 1222233
Q ss_pred HHHHHHHHHhchhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhhhhhccccchhhHHhhcCC-----CCCHHHHH
Q 008532 460 ASYFLIHYLFASQTGHVGALYSAFLAMHLAAGVPGVLAALALAYNTNLFGAITHYSSGQAAVYYGAG-----YIDLPDVF 534 (562)
Q Consensus 460 ~~~~~~~~~f~S~~a~~~il~Pi~~~la~~~Gv~p~~~~l~l~~~~~~~~~~tP~~s~~n~i~~~~g-----~i~~~d~~ 534 (562)
+..+++ +|.||++++.++.|+.... ++.. .+.++++++.++++||+++++|.+.++.+ +++++||+
T Consensus 296 ~~~~lS--~~isN~p~~~~~~pi~~~~------~~~~-~~~l~~~~~~gg~~tpigs~an~i~~~~~~~~g~~~~~~~~~ 366 (384)
T cd01117 296 VSIGLS--QLISNVPAVLLLLPFLPSA------DEKD-WLLLAAGSTIAGNLTLLGSAANLIVAEAAERRGVRLSFGEFL 366 (384)
T ss_pred HHHHHH--HHhccHHHHHHHHHHHHhc------ccHH-HHHHHHHhhcccccchhhHHHHHHHHHHHHHCCCCCcHHHHH
Confidence 333333 5899999999999988765 2222 34567777778999999999999998764 68999999
Q ss_pred HHhHHHHHHHHHHH
Q 008532 535 KMGFTMALVNAIIW 548 (562)
Q Consensus 535 k~g~~~~li~~vi~ 548 (562)
|+|++.+++..++.
T Consensus 367 k~g~~~~i~~~~~~ 380 (384)
T cd01117 367 KYGVPLTLLTAAIG 380 (384)
T ss_pred HHhhHHHHHHHHHH
Confidence 99999998877654
|
Based on sequence similarity, YbiR proteins are predicted to function as anion translocating permeases in eubacteria, archaea and plants. They belong to ArsB/NhaD superfamily of permeases that have been shown to translocate sodium, sulfate, arsenite and organic anions. A typical ArsB/NhaD permease is composed of 8-13 transmembrane domains. |
| >PLN00136 silicon transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-36 Score=323.66 Aligned_cols=382 Identities=13% Similarity=0.094 Sum_probs=293.6
Q ss_pred CChHHHHHHHHHHHHHhcCCChHHHHHhccchHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhCCChhhHHHHHHHHHH
Q 008532 141 LPVGAWAFLGLTTSIVTRTLAFPTAFAAFTNEVIWLIVISFFFARGFVKTGLGDRIATYFVKWLGKSTLGLSYGLTFSEA 220 (562)
Q Consensus 141 ~p~~~~all~~~ll~l~gv~~~~~~~~~~~~~~i~li~~~~~la~al~~tGl~~ria~~i~~~~g~~~~~l~~~l~l~~~ 220 (562)
++....++++..+++++|..+++|+++.++|+++++++++++++.+++|+|+.|++++++.++.++ ++.+...++++++
T Consensus 33 i~~~~~Allga~llll~g~~~~~~a~~~i~~~tl~ll~gmmii~~~L~~tG~~~~ia~~l~~~~~~-~~~ll~~l~~~ta 111 (482)
T PLN00136 33 IGRTAGALLSAVLMIVFHVISPDDAYASIDLPILGLLFATMVVGSYLKNAGMFKHLGRLLAWRSQG-GRDLLCRVCVVTA 111 (482)
T ss_pred ccHHHHHHHHHHHHHHhCCCCHHHHHHhCCchHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHhcCC-hHHHHHHHHHHHH
Confidence 356777999999999999999999999999999999999999999999999999999999987544 5667888899999
Q ss_pred HhhhcCCChhhhhhHhHHHHHHHHHHHcCCCCCCCCcchhhhHHHHHhHHhhhhhcccccccchhHHHHHHHHHHcCCcc
Q 008532 221 LIAPAMPSTTARAGGVFLPIIKSLSLSAGSKPGDSSSKKLGSYLIQSQFQSAGNSSALFLTAAAQNLLCLKLAEELGVII 300 (562)
Q Consensus 221 ~ls~~~~s~~a~~~~i~~Pi~~~i~~~~g~~p~~~~~~~~~~~l~l~~~~~~~~~g~~t~~g~~~n~i~~g~~~~~G~~i 300 (562)
++|.+++|+++. .++.|++..+|++.|.+|. .++++.++++++||..||+|+++|+++.+ +.++
T Consensus 112 ~lSafl~N~~t~--llm~Piv~~la~~~~~~p~---------~~ll~la~aAn~Gg~~TpiG~p~Nlii~~-----~~~i 175 (482)
T PLN00136 112 LASALFTNDTCC--VVLTEFVLELAAERNLPAK---------PFLLALASSANIGSSATPIGNPQNLVIAF-----NSKI 175 (482)
T ss_pred HHHHHhccHHHH--HHHHHHHHHHHHHcCCCcH---------HHHHHHHHHHHHhhhhhhccccchheeeC-----CCCC
Confidence 999999998865 6999999999999998873 47788999999999999999999999875 3357
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCh------hHHHH-----------------------------
Q 008532 301 SSPWVSWFKAACVPALVALLATPLILYKLYPPEVKDTPDA------PAMAA----------------------------- 345 (562)
Q Consensus 301 ~~~~~~w~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~------~~~~~----------------------------- 345 (562)
+ |.||++.+.|+.++.+++...+.+++||++.+...+. .|..+
T Consensus 176 ~--F~dF~~~~~P~~li~l~v~~~~l~~~~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (482)
T PLN00136 176 T--FPKFLLGILPAMLAGMAVNMVMLLCMYWKDLDGGAELSVDGKQMEAVEEGRSPASAKSTKQQSPALLQAGLNGDGNG 253 (482)
T ss_pred C--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcccchhhhhhhcccccchhhhhhhhhhhhhhccccccccc
Confidence 8 9999999999999988888888888877665321110 00000
Q ss_pred --HHhhhcCCC----C-----HHHHHHH----H--HHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHhCCcChHHHhhcc
Q 008532 346 --KKLKQLGPV----T-----RNEWIMV----G--TMLLAVSLWIFGDALGIPSVVAAMIGLSILLLLGVLDWDDCLSEK 408 (562)
Q Consensus 346 --~~~~~~g~~----t-----~~e~~~l----~--i~~~~i~l~i~~~~~gi~~~~vall~~~ll~~~gvl~~~~~~~~~ 408 (562)
++..+.+.- . .++++.+ . +++..++.. .+|++..+++++++.++.+.+..+.+|+++ +
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~i~~~~ll~~~~~~~v~~~~l~~f----~~g~p~~~iAl~~a~~lll~~~~~~~~~l~-~ 328 (482)
T PLN00136 254 DMSSMMSENISTKHPWFMQCTEHRRKLFLKSFAYVVTVGMVVAY----MVGLNMSWTAITTAIALVVVDFRDAEPCLD-T 328 (482)
T ss_pred hhHHHhhccccccccccccchhccHHHHHHHHHHHHHHHHHHHH----HcCCCHHHHHHHHHHHHHHhcCCCHHHHHH-h
Confidence 000011100 0 1112221 1 222222222 367999999999999999999889999874 7
Q ss_pred CChhHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHhhccCCCchHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHH
Q 008532 409 SAWDTLAWFAVLVGMAGQLTNLGIVTWMSDSVAKCLQSFSLSWPAAFGVLQASYFLIHYLFASQTGHVGALYSAFLAMHL 488 (562)
Q Consensus 409 i~w~~l~l~~~~~~l~~~l~~tGi~~~ia~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~f~S~~a~~~il~Pi~~~la~ 488 (562)
+||+++++++|++.++.+++++|+.+++++.+.+..++.+ ....+.+..+. ....++.||++.+.++.|++...+.
T Consensus 329 v~W~~Llff~GlFilv~~l~~tGl~~~i~~~l~~~~~~~~--~~~~~~~~~~s--~~lS~~isNvp~~~~m~p~v~~~~~ 404 (482)
T PLN00136 329 VSYSLLVFFSGMFITVSGFNKTGLPGAIWNFMAPYSKVNS--VGGISVLSVII--LLLSNLASNVPTVLLMGDEVAAAAA 404 (482)
T ss_pred CCCcHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHhcCCCh--HHHHHHHHHHH--HHHHHHhccHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999987644321 12222222233 3344699999999999999887654
Q ss_pred HcCCC-HHHHHHHHHHHHhhhhhhccccchhhHHhhcC-------C-CCCHHHHHHHhHHHHHHHHHHHHH
Q 008532 489 AAGVP-GVLAALALAYNTNLFGAITHYSSGQAAVYYGA-------G-YIDLPDVFKMGFTMALVNAIIWGV 550 (562)
Q Consensus 489 ~~Gv~-p~~~~l~l~~~~~~~~~~tP~~s~~n~i~~~~-------g-~i~~~d~~k~g~~~~li~~vi~~~ 550 (562)
..|-+ +....+.++++++++++.||+|+.+|.+..+. | .++++||+|+|+|.++++.++...
T Consensus 405 ~~~~~~~~~~~~~la~ga~lGGn~TliGs~ANli~~~~~~~~~~~G~~isf~~f~k~G~P~~l~~~~i~~~ 475 (482)
T PLN00136 405 LISPAAVTRSWLLLAWVSTVAGNLSLLGSAANLIVCEQARRAPRNAYDLTFWQHIVFGVPSTLIVTAIGIP 475 (482)
T ss_pred ccCCcccchHHHHHHHHHhhccceeeccchhHHHHHHHHHHhhccCCcccHHHHHHHhHHHHHHHHHHHHH
Confidence 44322 12334457788889999999999999887542 3 389999999999999988877543
|
|
| >COG1055 ArsB Na+/H+ antiporter NhaD and related arsenite permeases [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-34 Score=299.74 Aligned_cols=405 Identities=21% Similarity=0.223 Sum_probs=332.2
Q ss_pred HHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhcCCChHHHHH--hccchHHHHHHHHHHHHHHHHHhCHHHHHHH
Q 008532 121 QAWQLLSIFLSTIAGLVLSPLPVGAWAFLGLTTSIVTRTLAFPTAFA--AFTNEVIWLIVISFFFARGFVKTGLGDRIAT 198 (562)
Q Consensus 121 ~~~~~l~i~~~~i~lw~~~~~p~~~~all~~~ll~l~gv~~~~~~~~--~~~~~~i~li~~~~~la~al~~tGl~~ria~ 198 (562)
..+..+.++..+.+.|..+++|.++.+.++..+++.+|+.+++|++. +..|+++.++++++++...++++|+.|+.+.
T Consensus 4 ~~~~~l~~~~l~~~~~~p~~~~~~~~a~~Ga~l~l~~giv~~~d~~~~~~i~~~~i~~l~~mmiiv~~l~~~G~Fe~~a~ 83 (424)
T COG1055 4 LLALALFIFTLVYVLIRPRKLPRAWAALLGALLALFLGIVTPEDALVVIGIDWNVILLLLGMMIIVLLLDESGFFEWLAI 83 (424)
T ss_pred HHHHHHHHHHHHHHhhhcCcCchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHH
Confidence 34556677788888899999999999999999999999999999998 6789999999999999999999999999999
Q ss_pred HHHHHhCCChhhHHHHHHHHHHHhhhcCCChhhhhhHhHHHHHHHHHHHcCCCCCCCCcchhhhHHHHHhHHhhhhhccc
Q 008532 199 YFVKWLGKSTLGLSYGLTFSEALIAPAMPSTTARAGGVFLPIIKSLSLSAGSKPGDSSSKKLGSYLIQSQFQSAGNSSAL 278 (562)
Q Consensus 199 ~i~~~~g~~~~~l~~~l~l~~~~ls~~~~s~~a~~~~i~~Pi~~~i~~~~g~~p~~~~~~~~~~~l~l~~~~~~~~~g~~ 278 (562)
++.++.+|++.++...+.++++++|.+++|+++. .++.|+.+.++++.|.++. ...+.+.+++|.||..
T Consensus 84 ~~v~~s~g~~~~L~~~l~ll~a~~SA~l~N~tt~--LlltPivl~~~~~~~~~~~---------p~l~~~~f~aN~gg~~ 152 (424)
T COG1055 84 KMVKRSKGSGLKLLLLLVLLGALLSAFLDNDTTA--LLLTPIVLAVARALGVNPV---------PFLIAEVFIANIGGLA 152 (424)
T ss_pred HHHHHhcCCcchHHHHHHHHHHHHHHHHccccee--ehhhhHHHHHHHHcCCCcc---------HHHHHHHHHHcccccc
Confidence 9999999999999999999999999999999875 6999999999999998863 5778889999999999
Q ss_pred ccccchhHHHHHHHHHHcCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCChhHHHHHHhhhcCCCCHH-
Q 008532 279 FLTAAAQNLLCLKLAEELGVIISSPWVSWFKAACVPALVALLATPLILYKLYPPEVKDTPDAPAMAAKKLKQLGPVTRN- 357 (562)
Q Consensus 279 t~~g~~~n~i~~g~~~~~G~~i~~~~~~w~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~- 357 (562)
||+|+++|++.... .| ++ |.||.....+|+++.+++...+.+++||++ +.++..|..++ .++. +-.++
T Consensus 153 t~iGdp~niii~~~---~g--is--F~~f~~~m~~p~l~~li~~~~vl~~~~~~~--~~~~~~~~~~~-~~~~-~ai~~~ 221 (424)
T COG1055 153 TPVGDPPNIIIASA---AG--IS--FNDFLANMFPPSLISLIATLVVLYLLFRRK--VIPERYDDLLL-LDPR-EAIRDR 221 (424)
T ss_pred cccCChHHHHHHHh---cC--CC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hccccchhhcc-cChh-cccccH
Confidence 99999999998764 34 78 999999999999999999999999888522 22222221111 1111 12222
Q ss_pred --HHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHhCCcChHH----HhhccCChhHHHHHHHHHHHHHHHHHhC
Q 008532 358 --EWIMVGTMLLAVSLWIFGDALGIPSVVAAMIGLSILLLLGVLDWDD----CLSEKSAWDTLAWFAVLVGMAGQLTNLG 431 (562)
Q Consensus 358 --e~~~l~i~~~~i~l~i~~~~~gi~~~~vall~~~ll~~~gvl~~~~----~~~~~i~w~~l~l~~~~~~l~~~l~~tG 431 (562)
-+....++..+++.....+.+|++...+++.++..+.+..-.+.+| +. ++++|++++++.|.+.+..+++++|
T Consensus 222 ~l~~~~~~vl~~vli~f~~~~~~~i~~~~val~~a~ill~~~~~~~~~~~~~il-~~v~W~~l~Ff~Glfi~V~gl~~~G 300 (424)
T COG1055 222 ALFKLSLVVLALVLIAFLLLPFLGIPVSLVALVGAAILLLLARLSPRESVNKIL-RGVEWSTLLFFIGLFIVVGGLENAG 300 (424)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHhccCcchhHHHhh-hcCChHHHHHHHHHHHHHHHHHHcC
Confidence 3556667777777777888899999999999999888866567777 76 4899999999999999999999999
Q ss_pred HHHHHHHHHHHhhccCCCchHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhhhhh
Q 008532 432 IVTWMSDSVAKCLQSFSLSWPAAFGVLQASYFLIHYLFASQTGHVGALYSAFLAMHLAAGVPGVLAALALAYNTNLFGAI 511 (562)
Q Consensus 432 i~~~ia~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~f~S~~a~~~il~Pi~~~la~~~Gv~p~~~~l~l~~~~~~~~~~ 511 (562)
+.+.+++.+....++.. +........+..+++ .+++|.+.+.++.|.........+.. .....++++++++++.+
T Consensus 301 v~~~la~~l~~~~~~~~--~~~~~~~~~~s~~lS--sv~~NvP~vl~~~~~i~~~~~~~~~~-~~lw~A~a~Ga~lGgnl 375 (424)
T COG1055 301 VTEDLASVLKALSSGGL--AAATLGIGWLSGLLS--SVLDNVPTVLTFAPIIKGLAANGMGK-EPLWLALALGADLGGNL 375 (424)
T ss_pred hHHHHHHHHHHHhcCCc--hHHHHHHHHHHHHHH--HhhccchHHHHHHHHHHhhcccccch-HHHHHHHHHhCccccch
Confidence 99999999998766432 222333334444444 48999999999999888876655443 34456678888999999
Q ss_pred ccccchhhHHhhcC-----CCCCHHHHHHHhHHHHHHHHHHHHHHHH
Q 008532 512 THYSSGQAAVYYGA-----GYIDLPDVFKMGFTMALVNAIIWGVTGT 553 (562)
Q Consensus 512 tP~~s~~n~i~~~~-----g~i~~~d~~k~g~~~~li~~vi~~~v~~ 553 (562)
||.|+.+|.+..+. .++++.|++|.|.+.++..+++.....+
T Consensus 376 T~IGs~Anlv~~~i~~~~g~~is~~~f~k~g~~i~~~~l~i~~~~l~ 422 (424)
T COG1055 376 TPIGSAANLVWLGVLERKGVPISFGEFFKVGIIVTLPSLFITLLYLY 422 (424)
T ss_pred hhhhhHHHHHHHHHHHHCCCcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999887652 2589999999999999999988766543
|
|
| >PLN00137 NHAD transporter family protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-31 Score=279.03 Aligned_cols=390 Identities=14% Similarity=0.137 Sum_probs=287.0
Q ss_pred CHHHHHHHHHHHHHHHHHhhc---CCChHHHHHHHHHHHHHhcCC---ChHHHHHhcc------chHHHHHHHHHHHHHH
Q 008532 119 SPQAWQLLSIFLSTIAGLVLS---PLPVGAWAFLGLTTSIVTRTL---AFPTAFAAFT------NEVIWLIVISFFFARG 186 (562)
Q Consensus 119 s~~~~~~l~i~~~~i~lw~~~---~~p~~~~all~~~ll~l~gv~---~~~~~~~~~~------~~~i~li~~~~~la~a 186 (562)
+.++...+.+|+.+..+.++| ++|....++.+..++.+++.+ +.++++.... ++++.++++++++.+.
T Consensus 2 ~~~~~~~~~if~~~y~~i~~e~~~~i~~~~~al~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~g~m~iv~~ 81 (424)
T PLN00137 2 ANQGLAMALVFGAGYAGIIFEESLAFNKSGVALLMAVSLWVIRAIGAPSLEIVTLELRHALAEVSEIVFFLLGAMTIVEI 81 (424)
T ss_pred CcchhHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778889999999999999 899999999998888777777 7777666666 8899999999999999
Q ss_pred HHHhCHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhhhcCCChhhhhhHhHHHHHHHHHHHcCCCCCCCCcchhhhHHHH
Q 008532 187 FVKTGLGDRIATYFVKWLGKSTLGLSYGLTFSEALIAPAMPSTTARAGGVFLPIIKSLSLSAGSKPGDSSSKKLGSYLIQ 266 (562)
Q Consensus 187 l~~tGl~~ria~~i~~~~g~~~~~l~~~l~l~~~~ls~~~~s~~a~~~~i~~Pi~~~i~~~~g~~p~~~~~~~~~~~l~l 266 (562)
++++|+.|++++++.++ +++++.+.++++++++|++++|+++. .++.|+...++++. +|. .....
T Consensus 82 l~~~g~f~~~a~~~~~~---~~~~l~~~~~~~~~~lS~~l~N~tt~--l~~~p~~~~~~~~~--~~~--------~~~~~ 146 (424)
T PLN00137 82 VDAHQGFKLVTDSITTR---SPRTLLWVVGFITFFLSSILDNLTTT--IVMVSLLRKLVPPS--EYR--------KLLGA 146 (424)
T ss_pred HHHcCcHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhhcc--cch--------HHHHH
Confidence 99999999999999986 88899999999999999999999865 68999998887753 221 23356
Q ss_pred HhHHhhhhhcccccccchhHHHHHHHHHHcCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCChhHHHHH
Q 008532 267 SQFQSAGNSSALFLTAAAQNLLCLKLAEELGVIISSPWVSWFKAACVPALVALLATPLILYKLYPPEVKDTPDAPAMAAK 346 (562)
Q Consensus 267 ~~~~~~~~~g~~t~~g~~~n~i~~g~~~~~G~~i~~~~~~w~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (562)
...+++|+||+.||+|+|||+++.+. + +++ +.|++....+|.++..++.+.+.++.+|++.++.. .+
T Consensus 147 ~~~~aaNiGg~~TpiGnp~NllI~~~----~-~ls--f~~f~~~l~~P~li~~lv~~~i~~~~~~~~~~~~~-~~----- 213 (424)
T PLN00137 147 VVVVAANAGGAWTPIGDVTTTMLWIH----G-QIS--TLPTMQGLFLPSAVSLAVPLALMSLTSEENGSPQD-SS----- 213 (424)
T ss_pred HHHHhccccceeccCCCcCeeeehcc----C-CCC--HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCChhh-cc-----
Confidence 67899999999999999999977642 2 478 99988888888888777777777777776542211 00
Q ss_pred HhhhcCCCCHHHHHHHHHHHHHHHHH-HhcCCCCCChHHHHHHHHHHHHHh-----------CCcChHHHhhccCChhHH
Q 008532 347 KLKQLGPVTRNEWIMVGTMLLAVSLW-IFGDALGIPSVVAAMIGLSILLLL-----------GVLDWDDCLSEKSAWDTL 414 (562)
Q Consensus 347 ~~~~~g~~t~~e~~~l~i~~~~i~l~-i~~~~~gi~~~~vall~~~ll~~~-----------gvl~~~~~~~~~i~w~~l 414 (562)
+.++..+..++++....+++..+..+ ++...+|+++.+.++.++.++.+. +..++||.++ ++||+++
T Consensus 214 ~~~~~~~~~~~~~l~~~l~i~~~~~~~~~~~~~gl~~~~~al~~~~~lll~~~~~~~~~~~~~~~~~~~~l~-~Vdw~tL 292 (424)
T PLN00137 214 PLLASEQMAPRGQLVFGVGVGALLFVPVFKALTGLPPYMGMLLGLGVLWILTDAIHYGESERQALKVPQALS-RIDTQGI 292 (424)
T ss_pred ccchhhhcccHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhcccccccccCHHHHHH-hCCccHH
Confidence 01111223334443333333333333 556667899999998887766553 2378888874 7999999
Q ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHHHhhccCCCchHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHcCCCH
Q 008532 415 AWFAVLVGMAGQLTNLGIVTWMSDSVAKCLQSFSLSWPAAFGVLQASYFLIHYLFASQTGHVGALYSAFLAMHLAAGVPG 494 (562)
Q Consensus 415 ~l~~~~~~l~~~l~~tGi~~~ia~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~f~S~~a~~~il~Pi~~~la~~~Gv~p 494 (562)
++++|.+.+.++++++|+.+++++.+.+..++ + . . +..+..+. .++.||.+.+.++.|+.- ..|.++
T Consensus 293 lfF~GlFilvgal~~tG~~~~la~~l~~~~~~-~---~-~--i~~~s~il--S~~IsNVP~~~~~~p~~~----~~~~~~ 359 (424)
T PLN00137 293 LFFLGILLSVGSLDAAGILRELANYLDANIPN-V---E-L--IASAIGVA--SAIIDNVPLVAATMGMYD----LTDYPM 359 (424)
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHHHhcCC-c---h-h--HHHHHHHH--HHHhcchHHHHHHhhhhh----hccCCc
Confidence 99999999999999999999999999765432 1 1 1 22223233 358999999999999876 234321
Q ss_pred -HHHHHHHHHHHhhhhhhccccchhhHHhhcCCCCC-HHHHHHHhHHHHHHHHHHHHHH
Q 008532 495 -VLAALALAYNTNLFGAITHYSSGQAAVYYGAGYID-LPDVFKMGFTMALVNAIIWGVT 551 (562)
Q Consensus 495 -~~~~l~l~~~~~~~~~~tP~~s~~n~i~~~~g~i~-~~d~~k~g~~~~li~~vi~~~v 551 (562)
.....+++++++.+|+.|++++..|.+.++..+-+ .+.+.| --+..++..+...++
T Consensus 360 ~~~~w~aLalga~lGGn~tliGS~Anvi~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 417 (424)
T PLN00137 360 DSELWQLIALCAGTGGSLLVIGSAAGVAFMGMEKVDFFWYLRK-VSGFAFAGYVAGIAA 417 (424)
T ss_pred chHHHHHHHHHhCccchHHHHHHHHHHHHHHHhhhhhhhhhhh-hhHHHHHHHHHHHHH
Confidence 22334567778889999999999999988753221 233333 334455555554444
|
|
| >PF02040 ArsB: Arsenical pump membrane protein; InterPro: IPR000802 Arsenic is a toxic metalloid whose trivalent and pentavalent ions inhibit a variety of biochemical processes | Back alignment and domain information |
|---|
Probab=99.98 E-value=8e-29 Score=259.79 Aligned_cols=403 Identities=20% Similarity=0.247 Sum_probs=304.6
Q ss_pred HHHHHHHHHHHhhcC--CChHHHHHHHHHHHHHhcCCChHHHHH--hccchHHHHHHHHHHHHHHHHHhCHHHHHHHHHH
Q 008532 126 LSIFLSTIAGLVLSP--LPVGAWAFLGLTTSIVTRTLAFPTAFA--AFTNEVIWLIVISFFFARGFVKTGLGDRIATYFV 201 (562)
Q Consensus 126 l~i~~~~i~lw~~~~--~p~~~~all~~~ll~l~gv~~~~~~~~--~~~~~~i~li~~~~~la~al~~tGl~~ria~~i~ 201 (562)
..+|+.++.+-+.++ +|.++.+..+..+++.+|+++++|+.+ +..||...+++++..++..++|.|+.||+|.++.
T Consensus 3 ~~if~~tl~~vi~rP~~l~~~~~A~~GA~l~l~~G~v~~~d~~~v~~~~~~~~l~~i~~~vis~~ld~~G~F~~~A~~~a 82 (423)
T PF02040_consen 3 IAIFLLTLLLVIWRPRGLPEAVWAVLGAALALALGVVPLSDALAVWGIVWDVTLFFIAMIVISELLDEAGFFDWLALHAA 82 (423)
T ss_pred HHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHhCCcCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhChHHHHHHHHH
Confidence 567778888777766 899999999999999999999999876 5678999999999999999999999999999999
Q ss_pred HHhCCChhhHHHHHHHHHHHhhhcCCChhhhhhHhHHHHHHHHHHHcCCCCCCCCcchhhhHHHHHhHHhhhhhcccccc
Q 008532 202 KWLGKSTLGLSYGLTFSEALIAPAMPSTTARAGGVFLPIIKSLSLSAGSKPGDSSSKKLGSYLIQSQFQSAGNSSALFLT 281 (562)
Q Consensus 202 ~~~g~~~~~l~~~l~l~~~~ls~~~~s~~a~~~~i~~Pi~~~i~~~~g~~p~~~~~~~~~~~l~l~~~~~~~~~g~~t~~ 281 (562)
++.+|+.+++...+.+.+.+.+.|++|+++. .++.|++..++++.|.+|+++ ...++++.+.++.++...|+
T Consensus 83 ~~a~g~~~rLf~~v~ll~~~vTaflsND~ta--lilTPivla~~~~~~~~~~~~------lp~l~a~~~iAntASl~Lpv 154 (423)
T PF02040_consen 83 RWARGSGRRLFLLVYLLGAVVTAFLSNDATA--LILTPIVLALARRLGLNPKPP------LPFLFACAFIANTASLLLPV 154 (423)
T ss_pred HhcCCCcchHHHHHHHHHHHHHHHHhccchh--hhhHHHHHHHHHHcCCCcccc------hHHHHHHHHHhhhhhccccc
Confidence 9998999999999999999999999999865 699999999999999987421 24677888899999999999
Q ss_pred cchhHHHHHHHHHHcCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCChhHHHHHHhhhcCCCCHHH---
Q 008532 282 AAAQNLLCLKLAEELGVIISSPWVSWFKAACVPALVALLATPLILYKLYPPEVKDTPDAPAMAAKKLKQLGPVTRNE--- 358 (562)
Q Consensus 282 g~~~n~i~~g~~~~~G~~i~~~~~~w~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~e--- 358 (562)
+++.|++.++. .+++ +.+|...+.+|.++.+...+.+.+++||+|..+..+.+ +.++..+..++.
T Consensus 155 SNltNLv~~~~-----~~~~--f~~y~~~m~~P~l~ai~~t~~vl~~~fr~~l~~~~~~~-----~~~~p~~~i~d~~~~ 222 (423)
T PF02040_consen 155 SNLTNLVAADA-----FGIS--FLEYAAVMALPSLAAIAVTYLVLWLYFRRDLPKRYDLS-----ELPPPKSAIKDPRLF 222 (423)
T ss_pred cCcHHHHHHHc-----cCcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchh-----cccCccccccchhHH
Confidence 99999999764 3478 99999999999999998888888888887754433311 111111111111
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHh----CCcChHHHhhccCChhHHHHHHHHHHHHHHHHHhCHHH
Q 008532 359 WIMVGTMLLAVSLWIFGDALGIPSVVAAMIGLSILLLL----GVLDWDDCLSEKSAWDTLAWFAVLVGMAGQLTNLGIVT 434 (562)
Q Consensus 359 ~~~l~i~~~~i~l~i~~~~~gi~~~~vall~~~ll~~~----gvl~~~~~~~~~i~w~~l~l~~~~~~l~~~l~~tGi~~ 434 (562)
+....+..+.+......+..|+|...++..+++++... +..+.+++++ +++|+++.+..|++.+..++++.|+.+
T Consensus 223 ~~~~~vl~~ll~~~~~~~~~~ip~~~va~~~a~ill~~~~r~~~~~~~~~l~-~~pW~il~F~~gLfvvV~~L~~~Gl~~ 301 (423)
T PF02040_consen 223 RLSLVVLALLLAGFFVASFLGIPVSAVAGAGAVILLALARRSRKISPKRVLR-EVPWSILPFVLGLFVVVEGLENTGLTE 301 (423)
T ss_pred HHHHHHHHHHHHHHHhccccCCcHHHHHHHHHHHHHHHHHhcccccHHHHHH-hCCchHHHHHHHHHHHHHHHhhcCHHH
Confidence 22333444444555666778899888887777666543 3566777775 799999999999999999999999999
Q ss_pred HHHHHHHHhhccCCCchHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhhhhhccc
Q 008532 435 WMSDSVAKCLQSFSLSWPAAFGVLQASYFLIHYLFASQTGHVGALYSAFLAMHLAAGVPGVLAALALAYNTNLFGAITHY 514 (562)
Q Consensus 435 ~ia~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~f~S~~a~~~il~Pi~~~la~~~Gv~p~~~~l~l~~~~~~~~~~tP~ 514 (562)
++++.+....++ +. ....+..-.+..+. .++++|.+...+..+..-+ ++..|.-......+..+++|++..+||.
T Consensus 302 ~l~~~l~~~~~~-~~-~~a~~~~g~~~A~l--snl~NNLPa~Li~~~ai~~-~~~~~~~~~~~~~A~lIG~nlGp~lTp~ 376 (423)
T PF02040_consen 302 LLARLLGTAASQ-GL-LAAILGMGFLSAIL--SNLMNNLPAVLIGALAIQA-AHAPGLVREALIYALLIGVNLGPNLTPI 376 (423)
T ss_pred HHHHHHHHHhcC-Ch-HHHHHHHHHHHHHH--HHHHhhhHHHHHHHhhhhc-ccCCchhHHHHHHHHHHhcccCcccchH
Confidence 999999876433 21 11122222223223 3578999876554442221 2222222234556778899999999999
Q ss_pred cchhhHHhhc----CC-CCCHHHHHHHhHHHHHHHHHHHHHHHHH
Q 008532 515 SSGQAAVYYG----AG-YIDLPDVFKMGFTMALVNAIIWGVTGTF 554 (562)
Q Consensus 515 ~s~~n~i~~~----~g-~i~~~d~~k~g~~~~li~~vi~~~v~~~ 554 (562)
||-.+++..+ .| +++.+|++|.|++.+...+++.....+.
T Consensus 377 GSLATLLWl~~L~~~Gi~is~~~f~k~G~vlt~p~Ll~al~~L~l 421 (423)
T PF02040_consen 377 GSLATLLWLHILRRKGIKISWGEFLKLGLVLTPPVLLAALLALWL 421 (423)
T ss_pred HhHHHHHHHHHHHHCCCCCCHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 9999987653 23 5899999999999988877665554433
|
Operons that encode arsenic resistance have been found in multicopy plasmids from both Gram-positive and Gram-negative bacteria []. The resistance mechanism is encoded from a single operon, which houses an anion pump. The pump has two polypeptide components: a catalytic subunit (the ArsA protein), which functions as an oxyanion-stimulated ATPase; and an arsenite export component (the ArsB protein), which is associated with the inner membrane []. The ArsA and ArsB proteins are thought to form a membrane complex that functions as an anion-translocating ATPase. The ArsB protein is distinguished by its overall hydrophobic character, in keeping with its role as a membrane-associated channel. Sequence analysis reveals the presence of 13 putative transmembrane (TM) regions.; GO: 0015105 arsenite transmembrane transporter activity, 0016021 integral to membrane |
| >PRK09547 nhaB sodium/proton antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.5e-28 Score=258.82 Aligned_cols=399 Identities=14% Similarity=0.127 Sum_probs=285.7
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhcCCChHHHHHhccchHHHHHHHHHHHHHHHHHhCHHHHHHHH
Q 008532 120 PQAWQLLSIFLSTIAGLVLSPLPVGAWAFLGLTTSIVTRTLAFPTAFAAFTNEVIWLIVISFFFARGFVKTGLGDRIATY 199 (562)
Q Consensus 120 ~~~~~~l~i~~~~i~lw~~~~~p~~~~all~~~ll~l~gv~~~~~~~~~~~~~~i~li~~~~~la~al~~tGl~~ria~~ 199 (562)
..+|....=|++++.+- .+..|....+++.+-. +++|..+++|+++++++|...+++..++++.++.++|+.++++.+
T Consensus 43 ~a~~~l~~~~i~~l~~~-~~~~pl~~~~~~a~~a-v~~Gv~s~~~a~~~f~~n~~vIlLL~fMVv~i~~~~gll~~v~~k 120 (513)
T PRK09547 43 VAGWLLVAEFIFTLAMA-LKCYPLQPGGLLAIEA-VFIGMTSPEHVYHEIAANLEVLLLLMFMVAGIYFMKQLLLFIFTK 120 (513)
T ss_pred HHHHHHHHHHHHHHHHH-HhccCCCchHHHHHHH-HHHCCCCHHHHHHHhccCHHHHHHHHHHHHHHHHHccHHHHHHHH
Confidence 67777777455544442 3334544555655555 778999999999998777666666677799999999999999999
Q ss_pred HHHHhCCChhhHHHHHHHHHHHhhhcCCChhhhhhHhHHHHHHHHHH-------H------------cCCCCCC----CC
Q 008532 200 FVKWLGKSTLGLSYGLTFSEALIAPAMPSTTARAGGVFLPIIKSLSL-------S------------AGSKPGD----SS 256 (562)
Q Consensus 200 i~~~~g~~~~~l~~~l~l~~~~ls~~~~s~~a~~~~i~~Pi~~~i~~-------~------------~g~~p~~----~~ 256 (562)
+.++.+ ++.++++.++++++++|.|++|++.. +++.|+..++.+ + .+.+|.. ++
T Consensus 121 il~~~~-s~~~Lll~~~l~aA~LSAFLdN~Tvv--av~iPV~l~~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~~~~~~ 197 (513)
T PRK09547 121 LLLSIR-SKMLLSLAFCLAAAFLSAFLDALTVI--AVVISVAVGFYGIYHRVASGKGFSEDHDLTDDSHIDELYREDLEQ 197 (513)
T ss_pred HHHhcC-CHHHHHHHHHHHHHHHHHHHhhHHHH--HhHHHHHHHHhhhhHHHHhccccccccccccccccchhhhhhhcc
Confidence 999976 58899999999999999999999865 699999996522 2 2222100 01
Q ss_pred cchhhhHHHHHhHHhhhhhcccccccchhHHHHHHHHHHcCCcccccHHHHHHHHHHHHHHHHHHHHHHH-------HHh
Q 008532 257 SKKLGSYLIQSQFQSAGNSSALFLTAAAQNLLCLKLAEELGVIISSPWVSWFKAACVPALVALLATPLIL-------YKL 329 (562)
Q Consensus 257 ~~~~~~~l~l~~~~~~~~~g~~t~~g~~~n~i~~g~~~~~G~~i~~~~~~w~~~~~~~~li~~~~~~~~~-------~~~ 329 (562)
++.+-+.+++...+++++||.+|++|+|||+++.+. .| ++ |.||+....|+++..+++...++ ++.
T Consensus 198 p~pfL~~Llmpla~asnlGGv~TLIG~PqNLiIas~---~g--~~--F~~F~~~~apv~lpvli~gll~~~l~~~~~~f~ 270 (513)
T PRK09547 198 FRAFLRSLMMHAGVGTALGGVMTMVGEPQNLIIAKQ---AG--WH--FGEFFLRMAPVTVPVLICGLLTCLLVEKFRWFG 270 (513)
T ss_pred cchHHHHHHHHHHHHHHhhhheeccCCcHHHHHHHh---cC--cc--hHHHHHHHHHHHHHHHHHHHHHHHHHHhCcEEe
Confidence 233445577778889999999999999999998763 35 56 88998888888877666666555 334
Q ss_pred cCCCCCCCCChhHH-HHHH-hhhcCCCCHHHHH-----HHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHhC---Cc
Q 008532 330 YPPEVKDTPDAPAM-AAKK-LKQLGPVTRNEWI-----MVGTMLLAVSLWIFGDALGIPSVVAAMIGLSILLLLG---VL 399 (562)
Q Consensus 330 ~~~~~~~~~~~~~~-~~~~-~~~~g~~t~~e~~-----~l~i~~~~i~l~i~~~~~gi~~~~vall~~~ll~~~g---vl 399 (562)
||++. ++..+. .++. .++..+.+.+++. .+.++. .+++.. ++.+.++++++.++++.+ ..
T Consensus 271 y~~~l---~~~~~~~l~~~~~~~~~~~~~~d~~~L~~~~l~~~~-li~~f~------l~~a~VaLiga~vill~~~~~~~ 340 (513)
T PRK09547 271 YGAKL---PEKVRQVLQDYDDQERAKRTRQDKAKLIVQALIGVW-LIVALA------LHLAEVGLIGLSVIILATAFTGV 340 (513)
T ss_pred ecccc---chhHHHHhhhhhhccCcccccccHHHHHHHHHHHHH-HHHHHH------HhHHHHHHHHHHHHHHhhcccCC
Confidence 44433 221111 1100 0111112222222 223333 333332 678899999998888775 46
Q ss_pred ChHHHhhcc-----CChhHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHhhccCCCchHHHHHHHHHHHHHHHHHhchhHH
Q 008532 400 DWDDCLSEK-----SAWDTLAWFAVLVGMAGQLTNLGIVTWMSDSVAKCLQSFSLSWPAAFGVLQASYFLIHYLFASQTG 474 (562)
Q Consensus 400 ~~~~~~~~~-----i~w~~l~l~~~~~~l~~~l~~tGi~~~ia~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~f~S~~a 474 (562)
+.|+.++ + +||+++ +.|.|.+.++++++|+.+.+++.+.+..++. + ..++......++ .+.+|.+
T Consensus 341 ~~e~~l~-~~~~~~v~w~tL--f~glFivV~~i~~~gl~~~i~~~~~~~~~~~----~-~~~~~~~sgllS--aiiDNVp 410 (513)
T PRK09547 341 TDEHAIG-KAFEEALPFTAL--LTVFFAVVAVIIDQHLFAPIIQFVLQASEHA----Q-LSLFYIANGLLS--SISDNVF 410 (513)
T ss_pred CHHHHHh-hCcCCCCChHHH--HHHHHHHHHHHHHhhhHHHHHHHHHHhcCCC----h-HHHHHHHHHHHH--HhhchHH
Confidence 7777664 5 999999 9999999999999999999999999976542 1 222333343344 4999999
Q ss_pred HHHHHHHHHHHHHHHcCC-CH---HHHHHHHHHHHhhhhhhccccchhhHHhh-c---CC-CCCHHHHHHHhHHHHHHHH
Q 008532 475 HVGALYSAFLAMHLAAGV-PG---VLAALALAYNTNLFGAITHYSSGQAAVYY-G---AG-YIDLPDVFKMGFTMALVNA 545 (562)
Q Consensus 475 ~~~il~Pi~~~la~~~Gv-~p---~~~~l~l~~~~~~~~~~tP~~s~~n~i~~-~---~g-~i~~~d~~k~g~~~~li~~ 545 (562)
.+.+++|++..+. ..|. ++ ..+..+++.++++.++.||.|+..|.+.. + .| +++++|+.|+|+|++++..
T Consensus 411 ~~~~~ip~v~~~~-~~g~~~~~~~~~L~~ALa~Ga~Lggn~T~iGasAnlv~~~~~~~~g~~isf~~~~k~glP~tlv~~ 489 (513)
T PRK09547 411 VGTVYINEAKAAL-ESGAISRKQFELLAVAINTGTNLPSVATPNGQAAFLFLLTSALAPLIRLSYGRMVWMALPYTIVLT 489 (513)
T ss_pred HHHHHHHHHHHHH-hcCCCccccchHHHHHHHHhcccchhhhHHHHHHHHHHHHHHHhCCCcccHHHHHHHhHHHHHHHH
Confidence 9999999999988 6776 22 35556678888999999999999998776 3 23 5899999999999999998
Q ss_pred HHHHHH
Q 008532 546 IIWGVT 551 (562)
Q Consensus 546 vi~~~v 551 (562)
++..+.
T Consensus 490 ~v~~~~ 495 (513)
T PRK09547 490 LVGLLA 495 (513)
T ss_pred HHHHHH
Confidence 876544
|
|
| >TIGR00775 NhaD Na+/H+ antiporter, NhaD family | Back alignment and domain information |
|---|
Probab=99.97 E-value=9e-29 Score=261.91 Aligned_cols=380 Identities=16% Similarity=0.146 Sum_probs=280.9
Q ss_pred HHHHHHHHHHHHHHhhc---CCChHHHHHHHHHHHHHhcCCChHHH---H---Hhcc-chHHHHHHHHHHHHHHHHHhCH
Q 008532 123 WQLLSIFLSTIAGLVLS---PLPVGAWAFLGLTTSIVTRTLAFPTA---F---AAFT-NEVIWLIVISFFFARGFVKTGL 192 (562)
Q Consensus 123 ~~~l~i~~~~i~lw~~~---~~p~~~~all~~~ll~l~gv~~~~~~---~---~~~~-~~~i~li~~~~~la~al~~tGl 192 (562)
..+..+|+.+..+.++| +++-..+++++..++.++|..+.+|+ + .... ++++.++++++++.+.++++|.
T Consensus 4 ~~~~~if~~~y~~i~~e~~~~~~r~~~al~ga~~~~~~~~~~~~~~~~~~~~~~~~d~~~ti~~LfgmMiiv~~l~~~g~ 83 (420)
T TIGR00775 4 FQLCLLFLFGYLTIVFEHIVRVNKSAIWLAMGGLMWLVCFSHIPDVDHAALEEEIADMAQVIFFLFVAMAIVELIDAHKG 83 (420)
T ss_pred HHHHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHCCc
Confidence 46788999999999999 89999999999999999999998887 4 3334 7999999999999999999999
Q ss_pred HHHHHHHHHHHhCCChhhHHHHHHHHHHHhhhcCCChhhhhhHhHHHHHHHHHHHcCCCCCCCCcchhhhHHHHH--hHH
Q 008532 193 GDRIATYFVKWLGKSTLGLSYGLTFSEALIAPAMPSTTARAGGVFLPIIKSLSLSAGSKPGDSSSKKLGSYLIQS--QFQ 270 (562)
Q Consensus 193 ~~ria~~i~~~~g~~~~~l~~~l~l~~~~ls~~~~s~~a~~~~i~~Pi~~~i~~~~g~~p~~~~~~~~~~~l~l~--~~~ 270 (562)
.|+++.++.++.+ +++.+.+++.++++|++.+|+++. .++.|+...+|+ .+|. .+.++ ..+
T Consensus 84 f~~la~~l~~~s~---r~Ll~~l~l~t~~lSa~LdN~tt~--ll~~Pv~l~i~~---~~~~---------~~ll~~~i~~ 146 (420)
T TIGR00775 84 FSALVAWCVGKSR---KKLLWLLGFLSFFLSAALDNLTSI--IIIISILKRLVK---ARED---------RLLLGAICVI 146 (420)
T ss_pred HHHHHHHHHHHhH---HHHHHHHHHHHHHHHHHHhhHHHH--HHHHHHHHHHhc---cCCc---------cchHHhHHHH
Confidence 9999998777643 689999999999999999999875 689999999985 3332 13444 789
Q ss_pred hhhhhcccccccchhHHHHHHHHHHcCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCChhHHHHHHhhh
Q 008532 271 SAGNSSALFLTAAAQNLLCLKLAEELGVIISSPWVSWFKAACVPALVALLATPLILYKLYPPEVKDTPDAPAMAAKKLKQ 350 (562)
Q Consensus 271 ~~~~~g~~t~~g~~~n~i~~g~~~~~G~~i~~~~~~w~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (562)
++|+||+.||+|+|||.+..+. + +++ |.|++....+|+++.+++.+.+.++.+|++.+...+ ++ .+
T Consensus 147 AANiGG~~TpIGdP~Ni~i~~~----~-~i~--f~~f~~~l~~p~li~l~v~~~il~~~~~~~~~~~~~------~~-~~ 212 (420)
T TIGR00775 147 AVNAGGAWTPLGDVTTTMLWIN----G-KIR--FSGIIMPLFVPSLVCVVVAGFCGQLFLPKRKPNTIH------ED-VE 212 (420)
T ss_pred hcccccceeeCCCcchhHhHhc----C-CCC--HHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccc------cc-cc
Confidence 9999999999999999988753 3 478 998888888888888777777777778765421110 11 11
Q ss_pred cCCCCHHHHHHHHHHH-HHHHHHHhcCCCCCChHHHHHHHHHHHHHhC------------CcChHHHhhccCChhHHHHH
Q 008532 351 LGPVTRNEWIMVGTML-LAVSLWIFGDALGIPSVVAAMIGLSILLLLG------------VLDWDDCLSEKSAWDTLAWF 417 (562)
Q Consensus 351 ~g~~t~~e~~~l~i~~-~~i~l~i~~~~~gi~~~~vall~~~ll~~~g------------vl~~~~~~~~~i~w~~l~l~ 417 (562)
..+...++++.+..++ ..+....+...+++++.+.+++++.++.+.+ ..+++|.++ ++||++++++
T Consensus 213 ~~~~~~~~~~~l~l~~~~~l~~f~~~~~~~l~~~~~al~~~~~lll~~~~l~~~~~~~~~~~~~~~~l~-~VDw~tLlfF 291 (420)
T TIGR00775 213 LKRALPKSRRIVLLGVGSLLMVPSWKAVLGFPPFMGALLGLGLVWLFSDWIHSPHGEKRLHLRVPHILT-RIDISSLTFF 291 (420)
T ss_pred cccchhhhHHHHHHHHHHHHHHHHHHhhcCccHHHHHHHHHHHHHHHHHHhhccccccccccCHHHHHH-hCCccHHHHH
Confidence 1122112222222222 2233334555678999999999988777754 345778774 7999999999
Q ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHhhccCCCchHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHcCCCHHHH
Q 008532 418 AVLVGMAGQLTNLGIVTWMSDSVAKCLQSFSLSWPAAFGVLQASYFLIHYLFASQTGHVGALYSAFLAMHLAAGVPGVLA 497 (562)
Q Consensus 418 ~~~~~l~~~l~~tGi~~~ia~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~f~S~~a~~~il~Pi~~~la~~~Gv~p~~~ 497 (562)
+|.+.+.++++++|..+++++.+.+..++. . . ....... .++.||.+.+..+.|+.-. -..++.+.
T Consensus 292 ~GlFilvg~l~~~G~l~~la~~l~~~~~~~----~--~--~~~s~i~--S~~IdNVP~va~~i~l~~~----~~~~~~w~ 357 (420)
T TIGR00775 292 IGILLAVNALSLLGYLEDVSNVMDTQFSRN----W--A--AVMVGLL--SSVLDNVPLVAATLGMYPL----PMSDGLWK 357 (420)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhcCcc----h--H--HHHHHHH--HHHhccHHHHHHHHHhccc----cCchHHHH
Confidence 999999999999999999999998754421 1 1 1222223 3599999999999997543 11234443
Q ss_pred HHHHHHHHhhhhhhccccchhhHHhhcCCCCCHHHHH-HHhHHHHHHHHHHHHHH
Q 008532 498 ALALAYNTNLFGAITHYSSGQAAVYYGAGYIDLPDVF-KMGFTMALVNAIIWGVT 551 (562)
Q Consensus 498 ~l~l~~~~~~~~~~tP~~s~~n~i~~~~g~i~~~d~~-k~g~~~~li~~vi~~~v 551 (562)
+++++++.+|+.|++|+..|.++.+..+.++.-++ |+.+ ..++.......+
T Consensus 358 --aLalga~lGGn~tlIGS~Anvv~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 409 (420)
T TIGR00775 358 --LIAYTAGTGGSILIIGSAAGVALMGAEKVQFTWYFKHLSW-IALASYFGGLVL 409 (420)
T ss_pred --HHHHHHCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 45677788999999999999988776655544333 3333 444554444443
|
These proteins are members of the NhaD Na+:H+ Antiporter (NhaD) Family (TC 2.A.62). A single member of the NhaD family has been characterized. This protein is the NhaD protein of Vibrio parahaemolyticus which has 12 GES predicted transmembrane regions. It has been shown to catalyze Na+/H+ antiport, but Li+ can also be a substrate. |
| >KOG2639 consensus Sodium sulfate symporter and related arsenite permeases [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-29 Score=257.87 Aligned_cols=402 Identities=19% Similarity=0.231 Sum_probs=292.6
Q ss_pred HHHhhcCCChHHHHHH-----HHHHHHHhcCCChHHHHHhccchHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhCCCh
Q 008532 134 AGLVLSPLPVGAWAFL-----GLTTSIVTRTLAFPTAFAAFTNEVIWLIVISFFFARGFVKTGLGDRIATYFVKWLGKST 208 (562)
Q Consensus 134 ~lw~~~~~p~~~~all-----~~~ll~l~gv~~~~~~~~~~~~~~i~li~~~~~la~al~~tGl~~ria~~i~~~~g~~~ 208 (562)
++.++|-+|-.-.+++ +..+.++...-+.+++.+..++++..+++|++++...+++||..|++|-...+..+|+.
T Consensus 190 aLiVfe~v~rt~aa~~~s~ls~a~Lavi~~rptle~iv~wID~etL~LLfGmMilv~ilseTg~FdYlav~ayriSrG~~ 269 (685)
T KOG2639|consen 190 ALIVFEIVDRTFAAMLASTLSLAILAVIGDRPTLETIVSWIDFETLGLLFGMMILVAILSETGVFDYLAVLAYRISRGHV 269 (685)
T ss_pred HHHHhhhcchHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhhHhcCCc
Confidence 3344555554443333 33344556678899999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhhhcCCChhhhhhHhHHHHHHHHHHHcCCCCCCCCcchhhhHHHHHhHHhhhhhcccccccchhHHH
Q 008532 209 LGLSYGLTFSEALIAPAMPSTTARAGGVFLPIIKSLSLSAGSKPGDSSSKKLGSYLIQSQFQSAGNSSALFLTAAAQNLL 288 (562)
Q Consensus 209 ~~l~~~l~l~~~~ls~~~~s~~a~~~~i~~Pi~~~i~~~~g~~p~~~~~~~~~~~l~l~~~~~~~~~g~~t~~g~~~n~i 288 (562)
+.++..++++++++|.+..|.+.. .++.|+++.+|+..+.+|. ...+++...+|+||..||+|+|||.+
T Consensus 270 w~li~~Lclvtav~Sa~ldN~Ttv--LLltpv~IRLcevm~L~p~---------pvLi~~vi~aNIGga~TPIGdPpNvI 338 (685)
T KOG2639|consen 270 WPLICLLCLVTAVLSAFLDNVTTV--LLLTPVVIRLCEVMNLDPH---------PVLIAVVIYANIGGAATPIGDPPNVI 338 (685)
T ss_pred hHHHHHHHHHHHHHHHHhcCCeEE--EEecHHHHHHHHHhcCCCC---------ceEEEEEEecccccccCcCCCCCcEE
Confidence 999999999999999999999865 6999999999999999985 35667778899999999999999988
Q ss_pred HHHH--HHHcCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-C--CCCCChhHHHH------------------
Q 008532 289 CLKL--AEELGVIISSPWVSWFKAACVPALVALLATPLILYKLYPPE-V--KDTPDAPAMAA------------------ 345 (562)
Q Consensus 289 ~~g~--~~~~G~~i~~~~~~w~~~~~~~~li~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~------------------ 345 (562)
++.- ..+.| ++ |..|-..++|..++.++..+.+....|..+ + .+.+++..+.+
T Consensus 339 Iatns~i~~~g--v~--f~~Ftahm~pgvlla~l~~~~~lrlly~~~~~l~~k~~~e~~el~~ei~v~r~~~~~~s~~sk 414 (685)
T KOG2639|consen 339 IATNSEIPKAG--VD--FAVFTAHMLPGVLLAMLQTFMYLRLLYWNIEELMVKEPDEEVELKHEIHVWRLAAAQVSPASK 414 (685)
T ss_pred EEecceecccC--cc--hhhhhHHHHHHHHHHHHHHhhhHhhheechHHHhccCchHHHHHHHHHHHhhcCHhhcCcccc
Confidence 7532 11234 67 889988888877776666665544444321 0 01111000000
Q ss_pred -----------------HHhhhcCCCC-----------------------HH--HHHHHHHHHHHHHHHHhcC---CC-C
Q 008532 346 -----------------KKLKQLGPVT-----------------------RN--EWIMVGTMLLAVSLWIFGD---AL-G 379 (562)
Q Consensus 346 -----------------~~~~~~g~~t-----------------------~~--e~~~l~i~~~~i~l~i~~~---~~-g 379 (562)
+++++..+-+ .+ -++....+...++.+++.+ ++ |
T Consensus 415 ~~envR~~~~~~i~~r~~~lr~r~~~~~~~~~a~~y~~tl~~l~~~~~irnk~ll~k~~~aL~fviv~F~l~svp~~~~g 494 (685)
T KOG2639|consen 415 EEENVRRTLSAKIRARARSLRERLPTSCNSNPAENYFNTLAELQAKNRIRNKTLLIKCLRALWFVIVCFFLQSVPSLHMG 494 (685)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhccccccCCccHHHHhhHHHHhhhcccccHHHHHHHHHHHHHHHHHHHHhccHHHhcC
Confidence 0011000000 00 0233344444455555443 34 7
Q ss_pred CChHHHHHHHHHHHHHh-CCcChHHHhhccCChhHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHhhccCCCchHHHHHHH
Q 008532 380 IPSVVAAMIGLSILLLL-GVLDWDDCLSEKSAWDTLAWFAVLVGMAGQLTNLGIVTWMSDSVAKCLQSFSLSWPAAFGVL 458 (562)
Q Consensus 380 i~~~~vall~~~ll~~~-gvl~~~~~~~~~i~w~~l~l~~~~~~l~~~l~~tGi~~~ia~~l~~~~~~~~~~~~~~~~~l 458 (562)
++.+++|++++.++++. ..-|.+... ++++|++++|+++.|.+-.++++.|+.+|+.+...+..-..+.+......++
T Consensus 495 l~LgW~AIlgA~llLIl~d~~D~e~il-~rVews~LLFfaalFI~~e~v~~lGli~~l~dlte~vil~v~e~~~~~vAi~ 573 (685)
T KOG2639|consen 495 LSLGWTAILGAILLLILADIKDIEAIL-HRVEWSTLLFFAALFILMEAVDKLGLIEWLGDLTEPVILSVGESYRLMVAIV 573 (685)
T ss_pred CCccHHHHHHHHHHHHHhchhhHHHHH-HHhhHHHHHHHHHHHHHHHHHHhhCHHHHHHHhhhHHhhhcchhhhhHHHHH
Confidence 89999999988877764 444444444 4899999999999999999999999999999998887655444333333333
Q ss_pred HHHHH-HHHHHhchhHHHHHHHHHHHHHHHH--HcCCCHHHHHHHHHHHHhhhhhhccccchhhHHhhc----CCC-CCH
Q 008532 459 QASYF-LIHYLFASQTGHVGALYSAFLAMHL--AAGVPGVLAALALAYNTNLFGAITHYSSGQAAVYYG----AGY-IDL 530 (562)
Q Consensus 459 ~~~~~-~~~~~f~S~~a~~~il~Pi~~~la~--~~Gv~p~~~~l~l~~~~~~~~~~tP~~s~~n~i~~~----~g~-i~~ 530 (562)
+++.. .....|.+|.+....++++..++.+ +.|.+-...+.+++++++.+|+.|-+|+..|.++.+ .|| +++
T Consensus 574 iilw~SAlasafidNipvt~~mVkl~~~lv~~~~~glpl~pliWaL~~ga~~gGNgTLiGasANvv~A~iAeqHGYkltF 653 (685)
T KOG2639|consen 574 IILWVSALASAFIDNIPVTAIMVKLLTSLVANSAVGLPLQPLIWALALGACLGGNGTLIGASANVVAAGIAEQHGYKLTF 653 (685)
T ss_pred HHHHHHHHHHHHhccCcchHHHHHHHHHHhhccccCCCcchHHHHHHhhhhhcCCceeechhhHHHHHHHHHHcCceEEe
Confidence 33322 2334589999999999999999865 468776666667777788899999999999987754 455 899
Q ss_pred HHHHHHhHHHHHHHHHHHHHH
Q 008532 531 PDVFKMGFTMALVNAIIWGVT 551 (562)
Q Consensus 531 ~d~~k~g~~~~li~~vi~~~v 551 (562)
.+++|.|+|+++....+..+.
T Consensus 654 ~~fF~~GfPmml~si~i~t~y 674 (685)
T KOG2639|consen 654 TQFFKVGFPMMLGSITIGTVY 674 (685)
T ss_pred hhHHHhcccHHHHHHHHHHHH
Confidence 999999999999888775543
|
|
| >TIGR00774 NhaB Na+/H+ antiporter NhaB | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.1e-27 Score=242.35 Aligned_cols=410 Identities=17% Similarity=0.142 Sum_probs=285.1
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhcCCChHHHHHhccchHHHHHHHHHHHHHHHHHhCHHHHHHHH
Q 008532 120 PQAWQLLSIFLSTIAGLVLSPLPVGAWAFLGLTTSIVTRTLAFPTAFAAFTNEVIWLIVISFFFARGFVKTGLGDRIATY 199 (562)
Q Consensus 120 ~~~~~~l~i~~~~i~lw~~~~~p~~~~all~~~ll~l~gv~~~~~~~~~~~~~~i~li~~~~~la~al~~tGl~~ria~~ 199 (562)
..+|...+=|++++.+- .+..|.---+++++= .+.+|..+++++++.+.++.+++++++|++|.+..++|+.+|++.+
T Consensus 43 ~~gw~l~~efiftlama-lkcypl~pgglla~e-a~~iG~~s~~~v~~e~~~n~iVLfLg~FmVAga~fmk~Ll~~I~tk 120 (515)
T TIGR00774 43 VAGWLLVAEFIFTLAMA-LKCYPLQPGGLLAIE-AIAIGMTSAAHVKHELVANIEVLLLLVFMVAGIYFMKQLLLFIFTK 120 (515)
T ss_pred HHHHHHHHHHHHHHHHH-HhcCCCCCCcHHHHH-HHHHCCCCHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78899999999988774 444544333444333 3456999999999999999999999999999999999999999955
Q ss_pred HHHHhCCChhhHHHHHHHHHHHhhhcCCChhhhhhHhHHHHHHHH------------HHHcCCCCCCC-------Ccchh
Q 008532 200 FVKWLGKSTLGLSYGLTFSEALIAPAMPSTTARAGGVFLPIIKSL------------SLSAGSKPGDS-------SSKKL 260 (562)
Q Consensus 200 i~~~~g~~~~~l~~~l~l~~~~ls~~~~s~~a~~~~i~~Pi~~~i------------~~~~g~~p~~~-------~~~~~ 260 (562)
.+-+.| ++..+.+.++++++++|+|++|++.+ ++++|+..++ +++.+.++++. +-+++
T Consensus 121 lll~i~-Sk~~L~l~f~laaafLSaFLsnttvt--AvmIpVavgfy~~yh~~~s~~~~~~~d~~~d~~~~~~~~~~l~~f 197 (515)
T TIGR00774 121 LLLGIR-SKTLLSLAFCFAAAFLSAFLDALTVV--AVVISVAVGFYGIYHKVASGNPIGDHDHTDDDTITELTRDDLENF 197 (515)
T ss_pred HHHhCC-cHHHHHHHHHHHHHHHHHHHHhHHHH--HHHHHHHHHHhHHhhhhhccCchhhcCCCccchhhhhhhhhHHHH
Confidence 554555 88899999999999999999998865 6999999999 66555555420 01133
Q ss_pred hh---HHHHHhHHhhhhhcccccccchhHHHHHHHHHHcCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----C
Q 008532 261 GS---YLIQSQFQSAGNSSALFLTAAAQNLLCLKLAEELGVIISSPWVSWFKAACVPALVALLATPLILYKLYPP----E 333 (562)
Q Consensus 261 ~~---~l~l~~~~~~~~~g~~t~~g~~~n~i~~g~~~~~G~~i~~~~~~w~~~~~~~~li~~~~~~~~~~~~~~~----~ 333 (562)
.+ .+++..++++++||++||+|+|||+++++.. | .+ +.+++....|.++..+++...++.++.|. .
T Consensus 198 r~fl~~LLM~~aiaAnLGGvlTpIGnPQNLiias~~---g--~~--F~~FF~~m~Pv~LP~lIilll~~~l~~~~~~~gy 270 (515)
T TIGR00774 198 RAFLRSLMMHAGVGTALGGVMTMVGEPQNLIIADQA---G--WL--FGEFFLRMSPVTLPVFICGLLTCALVEKLKVFGY 270 (515)
T ss_pred HHHHHHHHHHHHHHHHhhcccCCCCCchHHHHHHHh---C--CC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 33 6889999999999999999999999998763 4 44 56555555554444333333333322221 2
Q ss_pred CCCCCChhHHH--HHHhhhcCCCCHHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHH----hCCcChHH---H
Q 008532 334 VKDTPDAPAMA--AKKLKQLGPVTRNEWIMVGTMLLAVSLWIFGDALGIPSVVAAMIGLSILLL----LGVLDWDD---C 404 (562)
Q Consensus 334 ~~~~~~~~~~~--~~~~~~~g~~t~~e~~~l~i~~~~i~l~i~~~~~gi~~~~vall~~~ll~~----~gvl~~~~---~ 404 (562)
..+.|+..+.+ +.+.++..+.+++|+..+++=.+.-+..+.+-. ...+.++++|..+..+ .|+.|..+ .
T Consensus 271 g~~lp~~v~~~l~~~~~~~~~~~~~~~~~~l~~q~~~~~~l~~~la--~h~a~vg~igl~vii~~t~~~g~~~eh~~g~a 348 (515)
T TIGR00774 271 GEKLPDNVRQILVDFDREERKTRTNQDKIKLWVQALIAVWLIVALA--LHLAAVGLIGLSVIILATSFTGVTDEHSIGKA 348 (515)
T ss_pred cccCCHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhHHHHHHHHHHHHhcCCcchhhhhHH
Confidence 23344432211 222334456788888777665443332222211 3355666666655443 47666543 3
Q ss_pred hhccCChhHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHhhccCCCchHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHH
Q 008532 405 LSEKSAWDTLAWFAVLVGMAGQLTNLGIVTWMSDSVAKCLQSFSLSWPAAFGVLQASYFLIHYLFASQTGHVGALYSAFL 484 (562)
Q Consensus 405 ~~~~i~w~~l~l~~~~~~l~~~l~~tGi~~~ia~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~f~S~~a~~~il~Pi~~ 484 (562)
++|..+...+ +...+++..++.+..+.+-+-++....-++. +..++.....+++ .+.||.+.+.++.|++.
T Consensus 349 f~ealpftal--l~vff~~vavi~~q~lf~p~i~~vl~~~~~~-----q~~~ilw~SgilS--a~IDNVP~vatmIPvIk 419 (515)
T TIGR00774 349 FEESLPFTAL--LAVFFSVVAVIIDQELFSPIIDFVLAAEEKT-----QLALFYVFNGLLS--SISDNVFVGTVYINEAK 419 (515)
T ss_pred HhhhccHHHH--HHHHHHHHHHHHhhhhhHHHHHHHHcCCCcc-----chHHHHHHHHHHH--HhhccHHHHHHHHHHHH
Confidence 4455665543 3446777788888888888888887753321 2233334444444 48999999999999999
Q ss_pred HHHHHcCC-CH---HHHHHHHHHHHhhhhhhccccchhhHHhhc----CC-CCCHHHHHHHhHHHHHHHHHHHHHHHH
Q 008532 485 AMHLAAGV-PG---VLAALALAYNTNLFGAITHYSSGQAAVYYG----AG-YIDLPDVFKMGFTMALVNAIIWGVTGT 553 (562)
Q Consensus 485 ~la~~~Gv-~p---~~~~l~l~~~~~~~~~~tP~~s~~n~i~~~----~g-~i~~~d~~k~g~~~~li~~vi~~~v~~ 553 (562)
.+ ...|. ++ ..+..+++.+++++++.||.|+..|.+..+ .| +++++|++|+|+|.+++..++..+..+
T Consensus 420 ~l-~~~G~~~~~~~~~LWWALALGA~LGGNaTpiGAsANLVv~~iA~k~G~rISF~~flK~GlP~TLvsliVs~lyl~ 496 (515)
T TIGR00774 420 AA-LTEGLITREQFELLAVAINTGTNLPSVATPNGQAAFLFLLTSALAPLIRLSYGRMVYMALPYTIVLAIVGLLGIE 496 (515)
T ss_pred HH-HhcCCCccccccHHHHHHHHhccccccccHHHHHHHHHHHHHHHhCCCCccHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 99 66676 22 344555778888999999999999988764 23 589999999999999999988765443
|
These proteins are members of the NhaB Na+:H+ Antiporter (NhaB) Family (TC 2.A.34). The only characterised member of this family is the Escherichia coli NhaB protein, which has 12 GES predicted transmembrane regions, and catalyses sodium/proton exchange. Unlike NhaA this activity is not pH dependent. |
| >TIGR00784 citMHS citrate transporter, CitMHS family | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.5e-26 Score=245.12 Aligned_cols=396 Identities=14% Similarity=0.092 Sum_probs=285.3
Q ss_pred HHHHHHHHHHhhcCCChHHHHHHHHHHHHHhcCCChHHHH----Hhc--cchHHHHHHHHHHHHHHHHHhCHHHHHHHHH
Q 008532 127 SIFLSTIAGLVLSPLPVGAWAFLGLTTSIVTRTLAFPTAF----AAF--TNEVIWLIVISFFFARGFVKTGLGDRIATYF 200 (562)
Q Consensus 127 ~i~~~~i~lw~~~~~p~~~~all~~~ll~l~gv~~~~~~~----~~~--~~~~i~li~~~~~la~al~~tGl~~ria~~i 200 (562)
+.++..+.+-...++++.+.-++......+....+ +|.. +++ ..++..+++....++..++++|..|++++++
T Consensus 8 ~~~~~~~~l~~~~k~~~~~al~~~~~~~~~~~g~~-~~~~~~i~~G~~~~~~~~~~i~~~~~l~~il~~sG~~~~i~~~i 86 (431)
T TIGR00784 8 SMMTVFMILIMTKRLSPLVALTITPIVFALIGGFG-KGIGDMMIEGIQTVAPTAAMLLFAILYFGIMIDAGLFDPLIEKI 86 (431)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHcCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 33444444555666777666555555544443455 5542 233 3478888888999999999999999999999
Q ss_pred HHHhCCChhhHHHHHHHHHHHhhhcCCChhhhhhHhHHHHHHHHHHHcCCCCCCCCcchhhhHHHHHhHHhhhhhccccc
Q 008532 201 VKWLGKSTLGLSYGLTFSEALIAPAMPSTTARAGGVFLPIIKSLSLSAGSKPGDSSSKKLGSYLIQSQFQSAGNSSALFL 280 (562)
Q Consensus 201 ~~~~g~~~~~l~~~l~l~~~~ls~~~~s~~a~~~~i~~Pi~~~i~~~~g~~p~~~~~~~~~~~l~l~~~~~~~~~g~~t~ 280 (562)
.++.|+++..+.+...+.+..++.+.+|.++. .++.|+..+++++.|.+|. .+...+..+++.++ .+|
T Consensus 87 v~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~--li~~p~~~~l~~~lgi~~~---------~l~~~i~~~~~~~~-~~P 154 (431)
T TIGR00784 87 LSIVKGDPLKIAVGTAVLTMLIALDGDGTTTY--MITVSAMLPLYKRLGMNPM---------VLAGIAMLGLGIMN-MIP 154 (431)
T ss_pred HHHhCCCCceeHHHHHHHHHHHHHHhccchhh--hhHHHHHHHHHHHcCCCHH---------HHHHHHHHHhhhhc-cee
Confidence 99999988888999999999999999888764 6889999999999999873 44555566667777 789
Q ss_pred ccchhHHHHHHHHHHcCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCC----ChhHHHHH-HhhhcCCCC
Q 008532 281 TAAAQNLLCLKLAEELGVIISSPWVSWFKAACVPALVALLATPLILYKLYPPEVKDTP----DAPAMAAK-KLKQLGPVT 355 (562)
Q Consensus 281 ~g~~~n~i~~g~~~~~G~~i~~~~~~w~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~-~~~~~g~~t 355 (562)
.|++.|..+... | ++ +.||+++..|..+..+++...+.++++|+++++.. +.++..++ +.++..+.+
T Consensus 155 ~g~p~~~~a~~l----g--~~--~~~~~~~~~p~~i~~li~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (431)
T TIGR00784 155 WGGPTTRAISVL----G--LD--PSEFFVPLIPTMLGGILCVIAVAYLLGKKERKRLGVIQLEPRASQSYPAAALESELK 226 (431)
T ss_pred CCchHHHHHHHc----C--CC--HHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHhcccccchhhhhhhhccchhhhhc
Confidence 999888665443 6 56 88999999999888877777777766665443210 00000000 000111112
Q ss_pred --HHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHhCCcChH---HHhh----ccCChhHHHHHHHHHHHHHH
Q 008532 356 --RNEWIMVGTMLLAVSLWIFGDALGIPSVVAAMIGLSILLLLGVLDWD---DCLS----EKSAWDTLAWFAVLVGMAGQ 426 (562)
Q Consensus 356 --~~e~~~l~i~~~~i~l~i~~~~~gi~~~~vall~~~ll~~~gvl~~~---~~~~----~~i~w~~l~l~~~~~~l~~~ 426 (562)
+.++..+..++..+++.+.+. ++....++++..+.++.+..+.| |.++ +.++|.++++.++.+ +++
T Consensus 227 ~~~~~~~~Ll~~l~viv~~~~~~---~~~~~~~li~~~iall~~~~~~~~~~~~i~~~~~~~v~~~~Li~~aglf--~~~ 301 (431)
T TIGR00784 227 RPRLIWFNLLLTISLMVFLVLGT---KHLSVLFLIAFVLALTVNYPNVKMQKERIAAHSGNALTVVSMVFAAGVF--TGI 301 (431)
T ss_pred CchHHHHHHHHHHHHHHHHHhcc---cCHHHHHHHHHHHHHHhcCCCHHHHHHHHHhccccHhHHHHHHHHHHHH--HHH
Confidence 233566666666555444442 55777778888888777653332 3334 456777888888877 899
Q ss_pred HHHhCHHHHHHHHHHHhhccCCCchHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 008532 427 LTNLGIVTWMSDSVAKCLQSFSLSWPAAFGVLQASYFLIHYLFASQTGHVGALYSAFLAMHLAAGVPGVLAALALAYNTN 506 (562)
Q Consensus 427 l~~tGi~~~ia~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~f~S~~a~~~il~Pi~~~la~~~Gv~p~~~~l~l~~~~~ 506 (562)
++++|..|++++.+.+..++.. .+ ....++ .......+.++||++....+.|++.+++++.|+||.....+..++.+
T Consensus 302 l~~~G~i~~la~~l~~~~~~~~-~~-~~~~i~-~~~s~~~s~~~sn~a~~~~l~Piv~~ia~~~G~~~~~l~~a~~i~~~ 378 (431)
T TIGR00784 302 LSGTKMVDAMAGSLVSIIPSSM-GG-FFPVIV-ALTSIPFTFVMSNDAYYFGVLPIFAEAASAYGIDPVEIARASIMGQP 378 (431)
T ss_pred HhhcCHHHHHHHHHHHHcCcch-HH-HHHHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhccc
Confidence 9999999999999999876532 11 122222 22223345688999999999999999999999999998888888776
Q ss_pred hhhhhccccchhhHHhhcCCCCCHHHHHHHhHHHHHHHHHHHHHHHH
Q 008532 507 LFGAITHYSSGQAAVYYGAGYIDLPDVFKMGFTMALVNAIIWGVTGT 553 (562)
Q Consensus 507 ~~~~~tP~~s~~n~i~~~~g~i~~~d~~k~g~~~~li~~vi~~~v~~ 553 (562)
..+++|. +++|.+.++.++++.+|..|.+++..++..++..++++
T Consensus 379 -~~~~SPv-s~~~~l~~~~~~~~~~d~~k~~~~~~~~~~~v~~~~~~ 423 (431)
T TIGR00784 379 -VHLLSPL-VPSTVLLVGMLGVSLGDHQKFAVKWAVITSIVMTLLAL 423 (431)
T ss_pred -chhcCCc-hHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999 89999999999999999999999999999888777654
|
This family includes two characterized citrate/proton symporters from Bacillus subtilis. CitM transports citrate complexed to Mg2+, while the CitH apparently transports citrate without Mg2+. The family also includes uncharacterized transporters, including a third paralog in Bacillus subtilis. |
| >PF03600 CitMHS: Citrate transporter; InterPro: IPR004680 Characterised proteins in this entry belong mostly to the divalent anion symporter family, which is found in bacteria, archaea and eukaryotes | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.9e-27 Score=243.20 Aligned_cols=327 Identities=23% Similarity=0.267 Sum_probs=247.7
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHHh-----cCCChHHHHHhccchHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHh
Q 008532 130 LSTIAGLVLSPLPVGAWAFLGLTTSIVT-----RTLAFPTAFAAFTNEVIWLIVISFFFARGFVKTGLGDRIATYFVKWL 204 (562)
Q Consensus 130 ~~~i~lw~~~~~p~~~~all~~~ll~l~-----gv~~~~~~~~~~~~~~i~li~~~~~la~al~~tGl~~ria~~i~~~~ 204 (562)
+.....+..+++|....+.++..++.++ +..+++|.++.++|+++.+++++++ +++++|||..|++++++.++.
T Consensus 7 ~i~~~~~~~~~~~~~~~~~~~a~~~~l~g~~~~~~~~~~~~~~~~~~~~l~ll~g~~~-~~~l~~tG~~~~ia~~i~~~~ 85 (351)
T PF03600_consen 7 LIVLIVLIRKKIPVVAAALLGALLVALFGFPGFGVISPEEAFSFIDWNTLILLFGMMI-GAALEETGVFDWIARKIVRKS 85 (351)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccccccCHHHHHHHcchhHHHHHHHHHH-HHHHHHcCChHHHHHHHHhcc
Confidence 3334455667788888888888888888 8899999999999999999999999 999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHhhhcCCChhhhhhHhHHHHHHHHHHHcCCCCCCCCcchhhhHHHHHhHHhhhhhcccccccch
Q 008532 205 GKSTLGLSYGLTFSEALIAPAMPSTTARAGGVFLPIIKSLSLSAGSKPGDSSSKKLGSYLIQSQFQSAGNSSALFLTAAA 284 (562)
Q Consensus 205 g~~~~~l~~~l~l~~~~ls~~~~s~~a~~~~i~~Pi~~~i~~~~g~~p~~~~~~~~~~~l~l~~~~~~~~~g~~t~~g~~ 284 (562)
|++++++.+.++++++++|++.+|+++. .++.|++.+++++.|.+|. .+.+.+.++++.||+.||+|++
T Consensus 86 ~~~~~~l~~~~~~~~~~lS~~~~N~~~v--~~~~Pi~~~~~~~~~i~~~---------~~l~~l~~~a~~gg~~t~iG~p 154 (351)
T PF03600_consen 86 GGKPWRLLLLLMLVTALLSAFLDNTTVV--LIMIPIVLSLARKLGIPPS---------PLLMPLAFAANIGGMLTPIGNP 154 (351)
T ss_pred CCCHHHHHHHHHHHHHHHHHhhhcchHH--HhhHHHHHHHHHHcCCChH---------HHHHHHHHHhccccccCcCCCc
Confidence 9988889999999999999999999875 5888999999999998763 4667788999999999999999
Q ss_pred hHHHHHHHHHHcCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCChhHHHHHHhhhcCCCCHHHHHHHHH
Q 008532 285 QNLLCLKLAEELGVIISSPWVSWFKAACVPALVALLATPLILYKLYPPEVKDTPDAPAMAAKKLKQLGPVTRNEWIMVGT 364 (562)
Q Consensus 285 ~n~i~~g~~~~~G~~i~~~~~~w~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~e~~~l~i 364 (562)
+|.++.+. .++++. ..|++....|..++.+++..+..++..|+++ ++......+
T Consensus 155 ~nl~i~~~---~~~~~~--~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~ 208 (351)
T PF03600_consen 155 TNLIIANA---SGLPFF--GFDFFALGLPAVIVGLLVLIFILYFLFRKRK---------------------PKLFASPFI 208 (351)
T ss_pred chhhhhhh---cccccc--hhhhHhhhHHHHHHHHHHHHHHHHHHccccC---------------------cchhHHHHH
Confidence 99887432 344433 3899999998888777776665555544310 011111222
Q ss_pred HHHHHHHHHhcCCCCCChHHHH-HHHHHHHHHhCCcChHHHhhc------cCChhHHHHHHHHHHHHHHHHHhCHHHHHH
Q 008532 365 MLLAVSLWIFGDALGIPSVVAA-MIGLSILLLLGVLDWDDCLSE------KSAWDTLAWFAVLVGMAGQLTNLGIVTWMS 437 (562)
Q Consensus 365 ~~~~i~l~i~~~~~gi~~~~va-ll~~~ll~~~gvl~~~~~~~~------~i~w~~l~l~~~~~~l~~~l~~tGi~~~ia 437 (562)
+.+.+..... ..|..+.+.+ ..+.+++...+..+.||.. + ++||++++++++.+.++++++++|..|.++
T Consensus 209 l~~~~~~~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ll~~~~~~~~~~~l~~tG~~~~la 285 (351)
T PF03600_consen 209 LVLVVILVLL--VSGLVPIWIALLIGALLALLTNCKDLKEAY-RVLNSGASIDWNTLLFFAGLFIFVGALSNTGAFEALA 285 (351)
T ss_pred HHHHHHHHHH--HhccCcHHHHHHHHHHHHHHHhcccchhhh-HHHHhhccchHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 2222222221 2334444444 4566666677777777754 4 799999999999999999999999999999
Q ss_pred HHHHHhhccCCCchHHHHHHHHHHHHHHHHHhchhHHHHHHH-----HHHHHHHHHHcCCCHHHHHHHHHHH
Q 008532 438 DSVAKCLQSFSLSWPAAFGVLQASYFLIHYLFASQTGHVGAL-----YSAFLAMHLAAGVPGVLAALALAYN 504 (562)
Q Consensus 438 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~f~S~~a~~~il-----~Pi~~~la~~~Gv~p~~~~l~l~~~ 504 (562)
+.+.+..+.. ....+.....+++ .+.+|.+....+ .|+....+++.|+||..+.++.+++
T Consensus 286 ~~l~~~~~~~-----~~~~i~~~~~~ls--~~~~n~p~~~~~~~~~~~pi~~~~~~~~Gv~~~~l~~~~~ia 350 (351)
T PF03600_consen 286 DWLLSISGPL-----GPLAILWVSALLS--AVISNVPATLLMSNDAMLPIAISMAQQFGVSPLPLAWALAIA 350 (351)
T ss_pred HHHHHHHhhh-----HHHHHHHHHHHHH--HHHHhhhHHHHHhhhHHHHHHHHHHHHCCCCHHHHHHHHHhc
Confidence 9999975521 1222222232233 477788777666 9999999999999999988877654
|
Substrates shown to be transported by these proteins include citrate and phosphate []. This entry also contains the melanocyte-specific transporter protein P, mutation of which leads to albinism []. Another protein in this entry, SAC1, has been shown to regulate the sulphur deprivation response in Chlamydomonas by inducing cysteine biosynthesis, though its precise role in this induction is not known [].; GO: 0015137 citrate transmembrane transporter activity, 0015746 citrate transport, 0055085 transmembrane transport, 0016021 integral to membrane |
| >TIGR00786 dctM TRAP transporter, DctM subunit | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.5e-24 Score=227.18 Aligned_cols=362 Identities=17% Similarity=0.149 Sum_probs=248.9
Q ss_pred HHHhccchHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhhhcCCChhhhhhHhHHHHHHHH
Q 008532 165 AFAAFTNEVIWLIVISFFFARGFVKTGLGDRIATYFVKWLGKSTLGLSYGLTFSEALIAPAMPSTTARAGGVFLPIIKSL 244 (562)
Q Consensus 165 ~~~~~~~~~i~li~~~~~la~al~~tGl~~ria~~i~~~~g~~~~~l~~~l~l~~~~ls~~~~s~~a~~~~i~~Pi~~~i 244 (562)
.++...+....-+.-...++..++|+|+.||+.+...+..|+.+.+.....++.+.+++.+.++.++.+ ..+.|+..++
T Consensus 31 ~~~~~~~~~l~ai~~Fi~~g~~l~~~G~~~~l~~~~~~~~g~~~~~~~~~~~~~~~l~g~l~Gs~~ata-a~~~~~~iP~ 109 (405)
T TIGR00786 31 LFGGTDSFTLLAIPFFILAGNLMNRGGLARRLLNFAKALVGHLRGGLGHVNVLACALFAAVSGSSVATA-AALGSLLIPA 109 (405)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHhccchHHHHH-HHHHHHHHHH
Confidence 344544544444444446789999999999999999999999999999999999999999988888887 5999999999
Q ss_pred HHHcCCCCCCCCcchhhhHHHHHhHHhhhhhcccccccchhHHHHHHHHHHcCCcccccHHHHHHHHHHHHHHHHHHHHH
Q 008532 245 SLSAGSKPGDSSSKKLGSYLIQSQFQSAGNSSALFLTAAAQNLLCLKLAEELGVIISSPWVSWFKAACVPALVALLATPL 324 (562)
Q Consensus 245 ~~~~g~~p~~~~~~~~~~~l~l~~~~~~~~~g~~t~~g~~~n~i~~g~~~~~G~~i~~~~~~w~~~~~~~~li~~~~~~~ 324 (562)
+++.|++|+ ...+....+ ++...++....+.+.++.. .| ++ +.||+..+..|+.+.......
T Consensus 110 m~~~g~~~~----------~a~av~a~~--~~~g~l~Pp~~~~i~~a~~--~~--i~--~~~~~~a~~~p~~l~~~~~~~ 171 (405)
T TIGR00786 110 MTKAGYPKA----------FAAGVIAAS--GIIGPLIPPSIVMIIYGVA--AG--VS--IAKLFIAGILPGLLLALSLML 171 (405)
T ss_pred HHHcCCCHH----------HHHHHHHHH--hccccccCchHHHHHHHHH--hC--CC--HHHHHHHHHHHHHHHHHHHHH
Confidence 999999874 112222222 2233332211222444332 34 67 889999888888777766666
Q ss_pred HHHHhcCCCCCCCCChhHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHH-----HhCCc
Q 008532 325 ILYKLYPPEVKDTPDAPAMAAKKLKQLGPVTRNEWIMVGTMLLAVSLWIFGDALGIPSVVAAMIGLSILL-----LLGVL 399 (562)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~e~~~l~i~~~~i~l~i~~~~~gi~~~~vall~~~ll~-----~~gvl 399 (562)
+.+.+.|+++.+..+..+ .+++.+ ..++++..+.+.++.+..+..+. .++.+.+..+....+ ..+..
T Consensus 172 ~~~~~~~~~~~~~~~~~~-~~~~~~----~~~~~~~~l~l~~~vi~~~~~g~---~~~~~a~~~~~~~alli~~~~~~~~ 243 (405)
T TIGR00786 172 TIWWVARRLGYPRPPKAS-LRQRLR----AFRKSIWALLLPVLIIGGIFSGI---FTPTEAAAVAAVYALALSTFVYREL 243 (405)
T ss_pred HHHHHHhcCCCCCCCccC-HHHHHH----HHHHHHHHHHHHHHHHHHHHHhh---cCHHHHHHHHHHHHHHHHHHHHCCC
Confidence 655554443222111111 111111 12345555666555555555543 345544433333222 23568
Q ss_pred ChHHHhhccCC------hhHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHhhccCCCchHHHHHHHHHHHHHHHHHhchhH
Q 008532 400 DWDDCLSEKSA------WDTLAWFAVLVGMAGQLTNLGIVTWMSDSVAKCLQSFSLSWPAAFGVLQASYFLIHYLFASQT 473 (562)
Q Consensus 400 ~~~~~~~~~i~------w~~l~l~~~~~~l~~~l~~tGi~~~ia~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~f~S~~ 473 (562)
++||.. +.++ +.++++++++..++.+++++|+.|.+++.+.+. +. + + .....+........+++++|+
T Consensus 244 ~~~~~~-~~l~~~~~~~~~i~lii~aa~~~~~vL~~tG~~~~ia~~l~~~-~~-~--~-~~~~~li~~~~~ilg~~~~~~ 317 (405)
T TIGR00786 244 TLKSLC-DVLLESLRTTSMVMLIIAGATVFSWLLTHAQIPQRLADLLANA-IS-S--P-IVFLIMINILLLIVGMFMDLT 317 (405)
T ss_pred CHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHhC-Cc-c--H-HHHHHHHHHHHHHHHhcccHH
Confidence 888864 4455 788999999999999999999999999999985 22 1 2 233333333445566799999
Q ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhhhhhccccchhhHHhhcCCCCCHHHHHHHhHHHHHHHHHHHHHHHH
Q 008532 474 GHVGALYSAFLAMHLAAGVPGVLAALALAYNTNLFGAITHYSSGQAAVYYGAGYIDLPDVFKMGFTMALVNAIIWGVTGT 553 (562)
Q Consensus 474 a~~~il~Pi~~~la~~~Gv~p~~~~l~l~~~~~~~~~~tP~~s~~n~i~~~~g~i~~~d~~k~g~~~~li~~vi~~~v~~ 553 (562)
+...++.|++.+++++.|+||.++.+.+.++++ .++++|+-+....+..+.++++.+|++|.++|+.++..++..++
T Consensus 318 a~~~i~~PI~~p~a~~~Gv~p~~~~~~~~~~~~-~g~ltPPvg~~~~~~~~~~~~~~~~~~k~~~p~~~~~~~~~~~~-- 394 (405)
T TIGR00786 318 PAILILTPILLPVAVHLGIDPVHFGVMFVLNLE-IGLLTPPVGTNLFVASGVAKMSITEVTRALWPFLLAQFLVLLLV-- 394 (405)
T ss_pred HHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHH-HhcCCCCchHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHH--
Confidence 999999999999999999999999988888877 68889843333335578889999999999999999888776665
Q ss_pred HHHHHhhcC
Q 008532 554 FWWKFLGLY 562 (562)
Q Consensus 554 ~~w~~lGl~ 562 (562)
.+||.+-+|
T Consensus 395 ~~~p~~~~~ 403 (405)
T TIGR00786 395 TYFPALSLA 403 (405)
T ss_pred HHHHHHHhc
Confidence 567766555
|
force-dependent uptake of dicarboxylates into R. capsulatus. |
| >PF00939 Na_sulph_symp: Sodium:sulfate symporter transmembrane region; InterPro: IPR001898 Integral membrane proteins that mediate the intake of a wide variety of molecules with the concomitant uptake of sodium ions (sodium symporters) can be grouped, on the basis of sequence and functional similarities into a number of distinct families | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.8e-25 Score=242.32 Aligned_cols=282 Identities=19% Similarity=0.215 Sum_probs=235.6
Q ss_pred CccCCCCCCCCCCCCC-CccccccccccccCcCCCCCccccccccCCCCCCCCCCCCCCCcccchhHHHHHH--------
Q 008532 32 PISKSPPSIFPSHSRS-FPTLRSRSLSLSRPHIIRPIHSSSQNDTASTVPPTNLPSPPPPRGAKLLPFVISI-------- 102 (562)
Q Consensus 32 p~~~~~~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~i~~-------- 102 (562)
||.+++.+.++++|++ ++||.|+++++.........+.+++++.+||+...+..++..+.+.+|..|....
T Consensus 150 pi~~~i~~~~~~~~~~~~~~~~~~~l~l~~~~~a~~~g~~~~~g~~~n~i~~~~l~~~~g~~isf~~w~~~~~p~~ii~~ 229 (471)
T PF00939_consen 150 PILLSICEALGSKPSSKTPRNLGKALMLGIAFAASIGGMGTLTGSAPNLIAAGFLESATGISISFLDWFIYALPPGIIML 229 (471)
T ss_pred HHHHhhhhcccchhhhhHHHHHHHHHHHHHhhhccccccccccCCCchHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHH
Confidence 8999999999999955 6899999999999999999999999999999999999888888899999997643
Q ss_pred -HHHHHHHHhcCCCC-------------------CCCHHHHHHHHHHHHHHHHHhhcC---CChHHHHHHHHHHHHHhcC
Q 008532 103 -SIGLILRFLVPKPV-------------------EVSPQAWQLLSIFLSTIAGLVLSP---LPVGAWAFLGLTTSIVTRT 159 (562)
Q Consensus 103 -~~~l~~~~~~p~p~-------------------~ls~~~~~~l~i~~~~i~lw~~~~---~p~~~~all~~~ll~l~gv 159 (562)
...+.+|+++| || ++|++|++.+.+++.++++|++++ +|.+++++++..++.+.|+
T Consensus 230 ~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~lg~~s~~Ek~~~~i~~~~i~lw~~~~~~~i~~~~va~~~~~ll~~~~i 308 (471)
T PF00939_consen 230 VLMWLILYKLFK-PDVKNLPDGKEFIKKELKELGPMSKKEKKVLVIFLLTILLWITESFHGIDPAIVALLGAVLLFLPGI 308 (471)
T ss_pred HHHHHHHHHHhc-cccccchhhHHHHHHHHHhcCCCchhHhhhhhhhhhhhhcccCcccCCCCHHHHHHHHHHHHHHHHh
Confidence 22233445566 43 578899999999999999999998 5899999999999999999
Q ss_pred CChHHHH-HhccchHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhCC-ChhhHHHHHHHHHHHhhhcCCChhhhhhHhH
Q 008532 160 LAFPTAF-AAFTNEVIWLIVISFFFARGFVKTGLGDRIATYFVKWLGK-STLGLSYGLTFSEALIAPAMPSTTARAGGVF 237 (562)
Q Consensus 160 ~~~~~~~-~~~~~~~i~li~~~~~la~al~~tGl~~ria~~i~~~~g~-~~~~l~~~l~l~~~~ls~~~~s~~a~~~~i~ 237 (562)
+++||.. ++..|++++++.+.+.++.+++++|+.+|+++.+....++ ++......+..+..+++..+.|++|++ .++
T Consensus 309 l~~~d~~~~~i~W~~l~~~~g~~~lg~~l~~sG~~~~la~~l~~~l~~~~~~~~~~~i~~~~~~~~~~~~s~~a~~-~il 387 (471)
T PF00939_consen 309 LTWKDAAQKKIPWGTLFLFGGALSLGTALEKSGAAKWLANVLLPLLGGLSPFLVVLVILLVTVLLLTNFMSNTATV-AIL 387 (471)
T ss_pred ccHHHHHhcCCCchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHhcCcHHHH-HHH
Confidence 9999865 5899999999999999999999999999999999999884 665555555555555544444555555 589
Q ss_pred HHHHHHHHHHc-CCCCCCCCcchhhhHHHHHhHHhhhhhcccccccchhHHHHHHHHHHcCCcccccHHHHHHHHHHHHH
Q 008532 238 LPIIKSLSLSA-GSKPGDSSSKKLGSYLIQSQFQSAGNSSALFLTAAAQNLLCLKLAEELGVIISSPWVSWFKAACVPAL 316 (562)
Q Consensus 238 ~Pi~~~i~~~~-g~~p~~~~~~~~~~~l~l~~~~~~~~~g~~t~~g~~~n~i~~g~~~~~G~~i~~~~~~w~~~~~~~~l 316 (562)
.|++.+++++. |.+|. ...+.+.++++.++..+|+++++|.++++. |+ ++ ..|++|.|++.++
T Consensus 388 ~Pi~~~~a~~~~g~~p~---------~~~l~~~~~~~~~~~~lP~~sp~~~i~~~~----g~-~~--~~d~~k~G~~~~i 451 (471)
T PF00939_consen 388 IPIVISLAAALGGINPL---------ALALIVAFASSFAGFLLPYSSPPNAIAYGT----GY-YK--FKDFIKYGFPLTI 451 (471)
T ss_pred HHHHHHHhhhccCCChH---------HHHHHHHHHhhhccccCCcCCcceeEEEcC----CC-CC--HHHHHHHhHHHHH
Confidence 99999999999 88763 455556666666668899999999999875 75 78 9999999999999
Q ss_pred HHHHHHHHHHHHhcC
Q 008532 317 VALLATPLILYKLYP 331 (562)
Q Consensus 317 i~~~~~~~~~~~~~~ 331 (562)
+..++...+.+.|||
T Consensus 452 i~~iv~~~~~~~~w~ 466 (471)
T PF00939_consen 452 IAIIVIILVAYPYWK 466 (471)
T ss_pred HHHHHHHHHHHHHHH
Confidence 988888877776664
|
One of these families currently consists of the following proteins: Mammalian sodium/sulphate cotransporter []. Mammalian renal sodium/dicarboxylate cotransporter [], which transports succinate and citrate. Mammalian intestinal sodium/dicarboxylate cotransporter. Chlamydomonas reinhardtii putative sulphur deprivation response regulator SAC1 []. Caenorhabditis elegans hypothetical proteins B0285.6, F31F6.6, K08E5.2 and R107.1. Escherichia coli hypothetical protein yfbS. Haemophilus influenzae hypothetical protein HI0608. Synechocystis sp. (strain PCC 6803) hypothetical protein sll0640. Methanocaldococcus jannaschii (Methanococcus jannaschii) hypothetical protein MJ0672. These transporters are proteins of from 430 to 620 amino acids which are highly hydrophobic and which probably contain about 12 transmembrane regions.; GO: 0005215 transporter activity, 0006814 sodium ion transport, 0055085 transmembrane transport, 0016020 membrane |
| >PRK15060 L-dehydroascorbate transporter large permease subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2e-21 Score=203.88 Aligned_cols=363 Identities=14% Similarity=0.109 Sum_probs=258.6
Q ss_pred HHHHhccchHHHHHHHHHHH-HHHHHHhCHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhhhcCCChhhhhhHhHHHHHH
Q 008532 164 TAFAAFTNEVIWLIVISFFF-ARGFVKTGLGDRIATYFVKWLGKSTLGLSYGLTFSEALIAPAMPSTTARAGGVFLPIIK 242 (562)
Q Consensus 164 ~~~~~~~~~~i~li~~~~~l-a~al~~tGl~~ria~~i~~~~g~~~~~l~~~l~l~~~~ls~~~~s~~a~~~~i~~Pi~~ 242 (562)
+.+++. ++..++-+..|++ ++.++|+|+.||+-+......|+.+.++...-.+.+.+++....|..|.+ +.+-.+..
T Consensus 46 ~~~~~~-~s~~LlAIPlFil~G~lm~~~Gi~~rl~~~~~~lvG~~rGGLa~v~v~as~~fgaiSGSs~A~~-aaiG~i~i 123 (425)
T PRK15060 46 TLVNGA-DSFSLLAIPFFVLAGEIMNAGGLSKRIVDLPMKLVGHKPGGLGYVGVLAAMIMASLSGSAVADT-AAVAALLV 123 (425)
T ss_pred HHHHHc-cccHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhchHHHHH-HHHHHHHH
Confidence 344544 5566666677776 57899999999999999999999999999999999999999999999987 58999999
Q ss_pred HHHHHcCCCCCCCCcchhhhHHHHHhHHhhhhhcccccccchhHHHHHHHHHHcCCcccccHHHHHHHHHHHHHHHHHHH
Q 008532 243 SLSLSAGSKPGDSSSKKLGSYLIQSQFQSAGNSSALFLTAAAQNLLCLKLAEELGVIISSPWVSWFKAACVPALVALLAT 322 (562)
Q Consensus 243 ~i~~~~g~~p~~~~~~~~~~~l~l~~~~~~~~~g~~t~~g~~~n~i~~g~~~~~G~~i~~~~~~w~~~~~~~~li~~~~~ 322 (562)
+..+|.|||++ ...++..+++..|.. +....+.+.++... | .+ ..+.+..|+.|+++.....
T Consensus 124 P~M~k~GY~~~----------~aag~~aasg~lG~l--IPPSi~mIiy~~~~--~--~S--i~~LF~AGiiPGll~~~~~ 185 (425)
T PRK15060 124 PMMRSANYPVN----------RAAGLIASGGIIAPI--IPPSIPFIIFGVSS--G--LS--ISKLFMAGIAPGIMMGATL 185 (425)
T ss_pred HHHHHcCCCHH----------HHHHHHHHhccCCcc--CCcHHHHHHHHHHH--C--CC--HHHHHHHHHHHHHHHHHHH
Confidence 99999999853 233333344333333 33445677777643 4 56 7799999999999988888
Q ss_pred HHHHHHhcCCCCCCCCChhHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHH-----HhC
Q 008532 323 PLILYKLYPPEVKDTPDAPAMAAKKLKQLGPVTRNEWIMVGTMLLAVSLWIFGDALGIPSVVAAMIGLSILL-----LLG 397 (562)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~e~~~l~i~~~~i~l~i~~~~~gi~~~~vall~~~ll~-----~~g 397 (562)
..+.+.+.|+++.+..+ +. +.+|..+..++....+.+.++.+.....+- ..+++.+.+++...+ ..|
T Consensus 186 ~~~~~~~a~~~~~~~~~-~~----~~~~~~~~~~~a~~~l~~pviilggI~~Gi---~TpTEAaava~~yal~v~~~iyr 257 (425)
T PRK15060 186 MLTWWWQASRLNLPRQP-KA----TMREIWQSLVSGIWALFLPVIIIGGFRSGL---FTPTEAGAVAAFYALFVAVVIYR 257 (425)
T ss_pred HHHHHheeecCCCCCCC-CC----CHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cCHHHHHHHHHHHHHHHHHHHHc
Confidence 87777665543321111 10 111111112233334444444333333332 456665655554333 246
Q ss_pred CcChHHHhhc-----cCChhHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHhhccCCCchHHHHHHHHHHHHHHHHHhchh
Q 008532 398 VLDWDDCLSE-----KSAWDTLAWFAVLVGMAGQLTNLGIVTWMSDSVAKCLQSFSLSWPAAFGVLQASYFLIHYLFASQ 472 (562)
Q Consensus 398 vl~~~~~~~~-----~i~w~~l~l~~~~~~l~~~l~~tGi~~~ia~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~f~S~ 472 (562)
-++|||..+. +..-.+.+.++++..+++.++.+|+.+.+++.+.+..+ ++ ..++++.....+...+|++.
T Consensus 258 ~l~~~~l~~~l~~t~~~t~~i~~ii~~a~~f~~~lt~~gvp~~i~~~i~~~~~----~~-~~~Ll~i~~~~lvlGmfld~ 332 (425)
T PRK15060 258 EMTFSTLYHVLINAAKTTSVVMFLVASAQVSAWLITIAELPMMVSDLLQPLVD----SP-RLLFIVIMVAIMVVGMVMDL 332 (425)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHcCC----CH-HHHHHHHHHHHHHHHHhhhH
Confidence 7888886431 12245778888899999999999999999999988632 22 34444444555566679999
Q ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhhhhhccccchhhHHhhcCCCCCHHHHHHHhHHHHHHHHHHHHHHH
Q 008532 473 TGHVGALYSAFLAMHLAAGVPGVLAALALAYNTNLFGAITHYSSGQAAVYYGAGYIDLPDVFKMGFTMALVNAIIWGVTG 552 (562)
Q Consensus 473 ~a~~~il~Pi~~~la~~~Gv~p~~~~l~l~~~~~~~~~~tP~~s~~n~i~~~~g~i~~~d~~k~g~~~~li~~vi~~~v~ 552 (562)
++...++.|++.|++++.|+||++++..+..+.+ .+.+||+-.....+..+..+.+..|.+|..+|+.+..+++..++
T Consensus 333 ~a~ili~~Pil~Pi~~~~Gidpv~fgii~~~~~~-ig~iTPPvG~~lfv~~~ia~~~~~~i~~~~~Pf~~~~~~~l~l~- 410 (425)
T PRK15060 333 TPTVLILTPVLMPLVKEAGIDPIYFGVMFIINCS-IGLITPPVGNVLNVISGVAKLKFDDAVRGVFPYVLVLYSLLVLF- 410 (425)
T ss_pred HHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHH-HhCCCCCccHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHH-
Confidence 9999999999999999999999999999999887 78888875554445566778999999999999998888776555
Q ss_pred HHHHHHhhcC
Q 008532 553 TFWWKFLGLY 562 (562)
Q Consensus 553 ~~~w~~lGl~ 562 (562)
.|||-+-+|
T Consensus 411 -~~~P~l~l~ 419 (425)
T PRK15060 411 -IFIPELIIL 419 (425)
T ss_pred -HHhHHHHHc
Confidence 667766554
|
|
| >COG1593 DctQ TRAP-type C4-dicarboxylate transport system, large permease component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.3e-21 Score=198.31 Aligned_cols=356 Identities=17% Similarity=0.145 Sum_probs=260.7
Q ss_pred cchHHHHHHHHHHHH-HHHHHhCHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhhhcCCChhhhhhHhHHHHHHHHHHHc
Q 008532 170 TNEVIWLIVISFFFA-RGFVKTGLGDRIATYFVKWLGKSTLGLSYGLTFSEALIAPAMPSTTARAGGVFLPIIKSLSLSA 248 (562)
Q Consensus 170 ~~~~i~li~~~~~la-~al~~tGl~~ria~~i~~~~g~~~~~l~~~l~l~~~~ls~~~~s~~a~~~~i~~Pi~~~i~~~~ 248 (562)
.++...+-+..|+++ +.+++.|+.||+-+...+.+||.+.++...-.+.+.+++....|..|.+ +.+-.+..+..++.
T Consensus 5 ~~sf~LlAiPfFIlaG~lM~~gGi~~Rli~fa~a~vGh~rGGL~~v~i~~s~lf~~iSGSa~Ad~-aa~Gsi~ip~M~k~ 83 (379)
T COG1593 5 ADSFSLLAIPFFILAGELMNSGGIAKRLIDFANALVGHIRGGLAYVNIVASMLFGGISGSAVADA-AALGSILIPEMKKR 83 (379)
T ss_pred ccccHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhCCccchHHHHHHHHHHHHhcccccHHHHH-HHHHHHhHHHHHHc
Confidence 356667777888887 7899999999999999999999999999999999999999999999987 58999999999999
Q ss_pred CCCCCCCCcchhhhHHHHHhHHhhhhhcccccccchhHHHHHHHHHHcCCcccccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008532 249 GSKPGDSSSKKLGSYLIQSQFQSAGNSSALFLTAAAQNLLCLKLAEELGVIISSPWVSWFKAACVPALVALLATPLILYK 328 (562)
Q Consensus 249 g~~p~~~~~~~~~~~l~l~~~~~~~~~g~~t~~g~~~n~i~~g~~~~~G~~i~~~~~~w~~~~~~~~li~~~~~~~~~~~ 328 (562)
||+++ ..-++..+++.-+...|. +.+.++++... | .+ -.+.+..|+.|+++..+......++
T Consensus 84 GY~~~----------~aa~l~a~s~~ig~lIPP--Si~~IIyg~~a--~--~S--I~~LF~aGi~PGlLl~~~lm~~~~~ 145 (379)
T COG1593 84 GYPAA----------FAAALTAASGIIGPLIPP--SIPFIIYGVAA--G--VS--IGKLFVAGIVPGLLLTLALMVVAYI 145 (379)
T ss_pred CCCHH----------HHHHHHHhhccccccCCC--CchHHHHHHhc--c--Cc--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99864 122333344334444443 46678888754 4 45 6699999999999988888888888
Q ss_pred hcCCCCCCCCChhHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHh-----CCcChHH
Q 008532 329 LYPPEVKDTPDAPAMAAKKLKQLGPVTRNEWIMVGTMLLAVSLWIFGDALGIPSVVAAMIGLSILLLL-----GVLDWDD 403 (562)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~g~~t~~e~~~l~i~~~~i~l~i~~~~~gi~~~~vall~~~ll~~~-----gvl~~~~ 403 (562)
+.|+|+.+. +. +...+|..+-.++....+...++.+.+...+. ..+++.+.+++...++. |-++++|
T Consensus 146 ~a~~~~~~~-~~----~~s~~e~~~~~~~a~~aLllpvIIigGi~~G~---fTpTEaa~iav~yal~v~~~vYr~l~~~~ 217 (379)
T COG1593 146 VARKRGYPR-EE----RASFKERLKAAVKALWALLLPVIIIGGIRSGI---FTPTEAAAIAVLYALLVGAFVYRELTLKE 217 (379)
T ss_pred HHHhcCCCc-cc----CCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcc---ccHHHHHHHHHHHHHHHHHHHHhhccHHH
Confidence 777665331 11 11112222222333344444444444433332 56777777777665543 5677777
Q ss_pred Hhhc-----cCChhHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHhhccCCCchHHHHHHHHHHHHHHHHHhchhHHHHHH
Q 008532 404 CLSE-----KSAWDTLAWFAVLVGMAGQLTNLGIVTWMSDSVAKCLQSFSLSWPAAFGVLQASYFLIHYLFASQTGHVGA 478 (562)
Q Consensus 404 ~~~~-----~i~w~~l~l~~~~~~l~~~l~~tGi~~~ia~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~f~S~~a~~~i 478 (562)
+.+. +..-.++++++++-.+++.++.+++.+.+++++.+..++ +..+++++.+.++...+|++.++...+
T Consensus 218 l~~~l~~a~~~t~~Vm~iva~a~~f~~~lt~~~vp~~la~~~~~~~~~-----~~~~ll~inl~llvvG~fmd~~a~ili 292 (379)
T COG1593 218 LPKVLLEAVKTTAVVMFIVAAAAAFAWLLTVEQVPQQLADWLLSLSDS-----PLVVLLVINLLLLVVGTFMDLTAAILI 292 (379)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHhcCCC-----hHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 6432 222457888899999999999999999999999987443 234444455555666679999999999
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhhhhhhccccchhhHHhhcCCCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 008532 479 LYSAFLAMHLAAGVPGVLAALALAYNTNLFGAITHYSSGQAAVYYGAGYIDLPDVFKMGFTMALVNAIIWGVTGTFWWKF 558 (562)
Q Consensus 479 l~Pi~~~la~~~Gv~p~~~~l~l~~~~~~~~~~tP~~s~~n~i~~~~g~i~~~d~~k~g~~~~li~~vi~~~v~~~~w~~ 558 (562)
+.|++.|++++.|+||+++...+.++.+ .+.+||+-...-.+..+.++.+.+|..|.-+|+.+..++...++. |+|.
T Consensus 293 l~Pil~Pi~~~~GIDPvhfGvv~v~Nl~-IGliTPPvG~~Lfv~s~V~~~~~~~~~k~i~Pfl~~~~~~L~li~--~~P~ 369 (379)
T COG1593 293 LTPILLPIAAALGIDPVHFGVVFVLNLS-IGLITPPVGMVLFVASAVGKVPIEAVIKAILPFLVALILVLLLIT--YFPE 369 (379)
T ss_pred HHHHHHHHHHHhCCCceeeHHHHHHHHH-hhCCCCCcchhHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHH--HHHH
Confidence 9999999999999999999999999998 567777644333344567889999999999999998888877764 4454
Q ss_pred hh
Q 008532 559 LG 560 (562)
Q Consensus 559 lG 560 (562)
+-
T Consensus 370 ls 371 (379)
T COG1593 370 LS 371 (379)
T ss_pred HH
Confidence 43
|
|
| >PRK09412 anaerobic C4-dicarboxylate transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.9e-21 Score=202.01 Aligned_cols=380 Identities=16% Similarity=0.121 Sum_probs=246.1
Q ss_pred cCCChHHHHHHHHHHHHHhcCCChHHHHHhccchHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhCCChhhHHHHHHHH
Q 008532 139 SPLPVGAWAFLGLTTSIVTRTLAFPTAFAAFTNEVIWLIVISFFFARGFVKTGLGDRIATYFVKWLGKSTLGLSYGLTFS 218 (562)
Q Consensus 139 ~~~p~~~~all~~~ll~l~gv~~~~~~~~~~~~~~i~li~~~~~la~al~~tGl~~ria~~i~~~~g~~~~~l~~~l~l~ 218 (562)
+.+..+..+-++..++.+.=..+++| +++++++++++...+.+.++|||..|+++++..++.++++++..+.+.++
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~vi~~Il~vg~~~~vl~~TGaid~~~~~~~k~~~~~~~~~~lli~i~ 95 (433)
T PRK09412 20 GGIGIGFAGGLGVLILTFIFGLKPGS----IPIDVILIIMAVIAAIAAMQAAGGLDYLVKLAEKILRKNPKYITFLAPIV 95 (433)
T ss_pred hHHHHHHHHHHHHHHHHHhcCCCCCC----CCHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCchhHhHHHHH
Confidence 33556667777766665542366666 89999999999999999999999999999999999988888777778888
Q ss_pred HHHhhhcCCChhhhhhHhHHHHHHHHHHHcCCCCCCCCcchhhhHHHHHhHHhhhhhcccccccchhHHHHHHHHHHcCC
Q 008532 219 EALIAPAMPSTTARAGGVFLPIIKSLSLSAGSKPGDSSSKKLGSYLIQSQFQSAGNSSALFLTAAAQNLLCLKLAEELGV 298 (562)
Q Consensus 219 ~~~ls~~~~s~~a~~~~i~~Pi~~~i~~~~g~~p~~~~~~~~~~~l~l~~~~~~~~~g~~t~~g~~~n~i~~g~~~~~G~ 298 (562)
..+++.+.++... + ..+.|+..++++++|+||.+ .+.....++++|+..+|+++.++.++..+ + +.
T Consensus 96 ~~lfs~~~~~~~~-~-i~~~PI~i~ia~~lG~d~~~---------~l~~~~~~a~iG~~aspin~~tv~ia~~i-a--~~ 161 (433)
T PRK09412 96 TYLFTFLAGTGHI-A-FSTLPVIAEVAKEQGIRPSR---------PLSIAVVASQIAITASPISAAVVAMSSVL-E--PL 161 (433)
T ss_pred HHHHHHHhcHHHH-H-HHHHHHHHHHHHHcCCCCcc---------hHHHHHHHHHHhcccCCccHHHHHHHHHH-h--cC
Confidence 8888877655443 2 57999999999999999851 22345678888999999987755555443 3 22
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCChhHHH-HHHh----hhcCCCCHHHHHHHHHHHHHHHHH-
Q 008532 299 IISSPWVSWFKAACVPALVALLATPLILYKLYPPEVKDTPDAPAMA-AKKL----KQLGPVTRNEWIMVGTMLLAVSLW- 372 (562)
Q Consensus 299 ~i~~~~~~w~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~g~~t~~e~~~l~i~~~~i~l~- 372 (562)
+++ +.||+..+.|..++..++..++.+++.|+.+ +.|+.+++. +++. ++..++++|||..+.+|+++++..
T Consensus 162 gi~--f~~~~~~~lp~~iv~~~~~~~~~~~ya~kv~-~~P~~~~~~~~~~~~~~~~~~~~~t~r~kl~l~if~~~i~~~~ 238 (433)
T PRK09412 162 GVS--YLTLLMVVIPSTLLAVMVAAFVTNKMGKELK-DDPEYQKRLAEGLVKLRGEKEIEIKPGAKLSVILFLLGVVAVV 238 (433)
T ss_pred CCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-CChhHHHHhhchhhccccccccccCHhHHHHHHHHHHHHHHhe
Confidence 478 9999999999999988887777666654322 222211110 0111 122468999999999999987444
Q ss_pred HhcCCC----CC------ChHHHH----HHHHHHHHHhCCcChHHHhhccCCh---hHHHHHHHHHHHHHHHHHhCHHHH
Q 008532 373 IFGDAL----GI------PSVVAA----MIGLSILLLLGVLDWDDCLSEKSAW---DTLAWFAVLVGMAGQLTNLGIVTW 435 (562)
Q Consensus 373 i~~~~~----gi------~~~~va----ll~~~ll~~~gvl~~~~~~~~~i~w---~~l~l~~~~~~l~~~l~~tGi~~~ 435 (562)
+.+... +. +..+.+ +...++..+.+-++.+|..++..-+ ..++++.|..-....+.+.+ .|.
T Consensus 239 i~G~~~~~~~~w~~~~~~~~~e~~~~~fl~~gii~glv~gl~~~~ia~~~~F~~G~~~~v~iiGlA~~i~vi~~~~-~dt 317 (433)
T PRK09412 239 LYAIFPSLRPGFIEGPPLGMTEAIQIFMLSAAALIVLLCKIDTDEILSSSVFKSGMSACICILGVAWLGDTFVNAH-IDE 317 (433)
T ss_pred eeeeccccccccccCCCCCHHHHHHHHHHHHHHHHHHHhCCCHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHhh-HHH
Confidence 332211 11 222222 2223333334445666654321333 34444555544455555555 699
Q ss_pred HHHHHHHhhccCCCchHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhhhhhcccc
Q 008532 436 MSDSVAKCLQSFSLSWPAAFGVLQASYFLIHYLFASQTGHVGALYSAFLAMHLAAGVPGVLAALALAYNTNLFGAITHYS 515 (562)
Q Consensus 436 ia~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~f~S~~a~~~il~Pi~~~la~~~Gv~p~~~~l~l~~~~~~~~~~tP~~ 515 (562)
+.+.+.+.+++.+ + .....+.++ ...+.| .+++. |++.|+++..|++|....++..++. +.+++|.+
T Consensus 318 I~~~l~~~l~~~p--~-~~a~~mfiv----~~~i~g---qAa~~-pIm~PLad~lGi~rq~~Vla~q~g~--gn~i~Pts 384 (433)
T PRK09412 318 IKETAGSLIQSYP--W-LLAVALFFA----SALLYS---QAATA-KALMPLALALGVPPLTAIASFAAVS--GLFVLPTY 384 (433)
T ss_pred HHHHHHHHHhhCC--H-HHHHHHHHH----HHHHhh---HHHHH-HHHHHHHHHcCCCHHHHHHHHHHhc--cCEECCCc
Confidence 9999999887432 2 222222222 222223 34444 9999999999999999877776655 47778863
Q ss_pred chhhHHhhcCCCCCHHHHHHHhH-----HHHHHHHHHHHHHHHH
Q 008532 516 SGQAAVYYGAGYIDLPDVFKMGF-----TMALVNAIIWGVTGTF 554 (562)
Q Consensus 516 s~~n~i~~~~g~i~~~d~~k~g~-----~~~li~~vi~~~v~~~ 554 (562)
+..+...+..++++.+|.|+.+ ...++..+....+++.
T Consensus 385 -~~~ma~l~~~~i~~~~w~k~~~~~~~~~~~~~~~~~~~~~~~~ 427 (433)
T PRK09412 385 -PTLLAAVEMDDTGTTRIGKYVFNHSFMIPGLLGIAVSVAFGFL 427 (433)
T ss_pred -HHHHHHHhccCCCcchhhhhhcCCccccccHHHHHHHHHHHHH
Confidence 3334445777889999988732 2333444444444443
|
|
| >COG0471 CitT Di- and tricarboxylate transporters [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.2e-23 Score=224.30 Aligned_cols=278 Identities=17% Similarity=0.201 Sum_probs=234.0
Q ss_pred CCCccCCCCCCCCCCCCCCccccccccccccCcCCCCCccccccccCCCCCCCCCCCCCCCcccchhHHHHHH-------
Q 008532 30 YKPISKSPPSIFPSHSRSFPTLRSRSLSLSRPHIIRPIHSSSQNDTASTVPPTNLPSPPPPRGAKLLPFVISI------- 102 (562)
Q Consensus 30 ~~p~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~i~~------- 102 (562)
--|+++++.+.+|++|++ |.+.|+++...+.+.+++.++.++++||..+.+...+. . ..|..|....
T Consensus 148 ~~piv~~~~~~~~~~~~~---~~~~~l~~~i~~~~~ig~~~~~ig~~~N~i~~~~~~~~-~--~~~~~w~~~~~p~~iv~ 221 (461)
T COG0471 148 MLPLILSLSPLLGSPPRD---KIGKRLILGIALAANIGSALTPIGNPPNIIAAGLLNPI-S--LSWGEWFLAMLPLGILL 221 (461)
T ss_pred hHHhhhcchhhcCCChHH---HHHHHHHHHHHHHhHhhcccccccCCccHHHHHhhccc-C--CCHHHHHHHHhhHHHHH
Confidence 459999999999999965 99999999999999999999999999999988887762 1 7777776553
Q ss_pred --HHHHHHHHhcCCCC-------------------CCCHHHHHHHHHHHHHHHHHhhcCC----ChHHHHHHHHHHHHHh
Q 008532 103 --SIGLILRFLVPKPV-------------------EVSPQAWQLLSIFLSTIAGLVLSPL----PVGAWAFLGLTTSIVT 157 (562)
Q Consensus 103 --~~~l~~~~~~p~p~-------------------~ls~~~~~~l~i~~~~i~lw~~~~~----p~~~~all~~~ll~l~ 157 (562)
..+++.|+..|..+ +.+.+++..++++..+...|.+++. +.+.+++++..++.++
T Consensus 222 l~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~l~~~~w~~~~~~~~~~~~~~ali~~~~~~~~ 301 (461)
T COG0471 222 LLLLLLLLYKLFPPREIKETPNNPVAAKRELKELGPLLRDEKLLLGIFLLLLLLWIFGKLLGKIDATLIALIPVALLLLA 301 (461)
T ss_pred HHHHHHHHHhhcChHhhccCcchHHHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHH
Confidence 55566667777312 5788999999999999999998884 3578999999999999
Q ss_pred cCCChHHHHHhccchHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhCCC-hhhHHHHHHHHHHHhhhcCCChhhhhhHh
Q 008532 158 RTLAFPTAFAAFTNEVIWLIVISFFFARGFVKTGLGDRIATYFVKWLGKS-TLGLSYGLTFSEALIAPAMPSTTARAGGV 236 (562)
Q Consensus 158 gv~~~~~~~~~~~~~~i~li~~~~~la~al~~tGl~~ria~~i~~~~g~~-~~~l~~~l~l~~~~ls~~~~s~~a~~~~i 236 (562)
|+.+++|++++.+|++++++.+++.++.+++|+|..+++++.+....++. +..+...+++.+.+++.|.+|+ |++ ..
T Consensus 302 ~vl~~~~~~~~i~W~~lilf~g~i~l~~~l~~tG~~~~i~~~l~~~~~~~~~~~il~~~~~~~~~~~~f~Snt-A~~-~~ 379 (461)
T COG0471 302 GVLTWKEVYKKIDWGTLILFGGLIALGSALSKTGAIAWIAGLLAGSLGGLGPFAILLLLLLLTLVLTLFASNT-ATA-IA 379 (461)
T ss_pred HHHhHHHHHHhCCchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHhHH-HHH-HH
Confidence 99999999999999999999999999999999999999999999999874 5666667777777777777665 455 58
Q ss_pred HHHHHHHHHHHcCCCCCCCCcchhhhHHHHHhHHhhhhhcccccccchhHHHHHHHHHHcCCcccccHHHHHHHHHHHHH
Q 008532 237 FLPIIKSLSLSAGSKPGDSSSKKLGSYLIQSQFQSAGNSSALFLTAAAQNLLCLKLAEELGVIISSPWVSWFKAACVPAL 316 (562)
Q Consensus 237 ~~Pi~~~i~~~~g~~p~~~~~~~~~~~l~l~~~~~~~~~g~~t~~g~~~n~i~~g~~~~~G~~i~~~~~~w~~~~~~~~l 316 (562)
+.|++..++++.|.+|. .+.+ ....++.+++++|+|+++|.+++|. |+ ++ +.||++.|+|..+
T Consensus 380 m~Pi~~~ia~~l~~~p~---------~~~~-~v~~~as~~~~tpv~~~~n~iv~g~----G~-~k--~~d~~~~G~~l~~ 442 (461)
T COG0471 380 MVPIAIALASALGGAPL---------LLLM-LVAVSASGGFLTPVGSPPNPIALGS----GY-VK--FKDWWKVGFILSI 442 (461)
T ss_pred HHHHHHHHHHhcCCCch---------HHHH-HHHHHHhhhhhcCCCCCCCceEECC----CC-cc--HHHHHHhccHHHH
Confidence 99999999999988762 2333 3344555788999999999999886 65 67 8899999999999
Q ss_pred HHHHHHHHHHHHhcCC
Q 008532 317 VALLATPLILYKLYPP 332 (562)
Q Consensus 317 i~~~~~~~~~~~~~~~ 332 (562)
+...+...+.+.+++.
T Consensus 443 v~~iv~i~~~~~~~~~ 458 (461)
T COG0471 443 VLIIVLLVIGLLWWPV 458 (461)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9998888888777764
|
|
| >PF06808 DctM: DctM-like transporters; InterPro: IPR010656 This domain represents a conserved region located towards the N terminus of the DctM subunit of the bacterial and archaeal TRAP C4-dicarboxylate transport (Dct) system permease | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.3e-20 Score=193.92 Aligned_cols=350 Identities=17% Similarity=0.163 Sum_probs=248.9
Q ss_pred chHHHHHHHHHHH-HHHHHHhCHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhhhcCCChhhhhhHhHHHHHHHHHHHcC
Q 008532 171 NEVIWLIVISFFF-ARGFVKTGLGDRIATYFVKWLGKSTLGLSYGLTFSEALIAPAMPSTTARAGGVFLPIIKSLSLSAG 249 (562)
Q Consensus 171 ~~~i~li~~~~~l-a~al~~tGl~~ria~~i~~~~g~~~~~l~~~l~l~~~~ls~~~~s~~a~~~~i~~Pi~~~i~~~~g 249 (562)
++...+.+..|++ ++.++++|..||+.+...++.|+.+.++.....+.+.+++....|..|.+ +.+-++..+..+|.|
T Consensus 51 ~~~~l~aiplFil~G~ll~~~gi~~~l~~~~~~~~g~~~Ggla~~~v~as~~fgaisGS~~A~~-a~~G~i~iP~M~k~G 129 (416)
T PF06808_consen 51 DSFTLLAIPLFILMGELLERSGIADRLIDFANALVGRVRGGLAQVAVVASALFGAISGSSVANA-AAIGSITIPEMKKAG 129 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCCCCccchhHHHHHHHHHHHhccchHhHH-HHHHHHHHHHHHHcC
Confidence 3344455555554 68899999999999999999999999999999999999999999999987 589999999999999
Q ss_pred CCCCCCCcchhhhHHHHHhHHhhhhhcccccccchhHHHHHHHHHHcCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008532 250 SKPGDSSSKKLGSYLIQSQFQSAGNSSALFLTAAAQNLLCLKLAEELGVIISSPWVSWFKAACVPALVALLATPLILYKL 329 (562)
Q Consensus 250 ~~p~~~~~~~~~~~l~l~~~~~~~~~g~~t~~g~~~n~i~~g~~~~~G~~i~~~~~~w~~~~~~~~li~~~~~~~~~~~~ 329 (562)
|+++ ...++..+++..|...|. ....++++.+ -.| ++ ..+.+..++.|+++......++.+..
T Consensus 130 Y~~~----------~A~av~aasgtlG~liPP--si~~ii~~~a-~~~--~s--i~~lf~agiiPgll~~~~~~~~~~~~ 192 (416)
T PF06808_consen 130 YPPE----------FAAAVIAASGTLGQLIPP--SIGMIIYGMA-VTG--VS--IGDLFIAGIIPGLLLALGLMIYVYFI 192 (416)
T ss_pred CCHH----------HhHHHHhhccccchhcch--HHHHHHHHHh-hcc--ch--HHHHHHHHHHHHHHHHHHHHHhHhhe
Confidence 9864 223333444444444443 3455666552 224 56 88999999999999888888777777
Q ss_pred cCCCCCCCCChhHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHH---H--hCCcChHHH
Q 008532 330 YPPEVKDTPDAPAMAAKKLKQLGPVTRNEWIMVGTMLLAVSLWIFGDALGIPSVVAAMIGLSILL---L--LGVLDWDDC 404 (562)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~g~~t~~e~~~l~i~~~~i~l~i~~~~~gi~~~~vall~~~ll~---~--~gvl~~~~~ 404 (562)
.||+..+. +.++..+ +..+..++.+..+.+.++.+.....+. ..+++.+..++...+ . .+.++|||.
T Consensus 193 ~~~~~~~~-~~~~~~~----~~~~~~~~~~~~l~~p~iil~~i~~g~---~t~teaa~~~~~~~l~i~~~~~~~~~~~~l 264 (416)
T PF06808_consen 193 ARKPGLPP-EPRASLK----ERWRAFKRAIPALLIPVIILGGIYLGI---FTPTEAAAVAVVYALVIGLFVYRRLSWKDL 264 (416)
T ss_pred eeccccCc-cccchHH----HHHHHHHhcchHHHHHHHHHHHhhhcc---cchhhhhhhhHHHHHHHHHhhhcccChhhh
Confidence 66443222 1111112 222222344445555555444444443 334444444433322 2 367788875
Q ss_pred hhc-----cCChhHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHhhccCCCchHHHHHHHHHHHHHHHHHhchhHHHHHHH
Q 008532 405 LSE-----KSAWDTLAWFAVLVGMAGQLTNLGIVTWMSDSVAKCLQSFSLSWPAAFGVLQASYFLIHYLFASQTGHVGAL 479 (562)
Q Consensus 405 ~~~-----~i~w~~l~l~~~~~~l~~~l~~tGi~~~ia~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~f~S~~a~~~il 479 (562)
.+. +..-.+.+.++++..+++.++.+|+.+.+++.+.+..++ + ..++++..+..+...++++.++...+.
T Consensus 265 ~~~l~~~~~~~~~i~~iia~a~~~~~~l~~~g~~~~i~~~i~~l~~~----~-~~~l~l~~l~~lilG~~m~~~a~~ii~ 339 (416)
T PF06808_consen 265 WRALVETARTTGMILFIIAAAGIFSWVLTLTGVPQAIAEFILSLSGS----P-WLVLLLIMLILLILGMFMDTTAAIIIV 339 (416)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccHHHHHHHHhcCcc----h-HHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 431 112457788888999999999999999999999886432 1 233344444445666799999999999
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhhhhhhccccchhhHHhhcCCCCCHHHHHHHhHHHHHHHHHHHHHHH
Q 008532 480 YSAFLAMHLAAGVPGVLAALALAYNTNLFGAITHYSSGQAAVYYGAGYIDLPDVFKMGFTMALVNAIIWGVTG 552 (562)
Q Consensus 480 ~Pi~~~la~~~Gv~p~~~~l~l~~~~~~~~~~tP~~s~~n~i~~~~g~i~~~d~~k~g~~~~li~~vi~~~v~ 552 (562)
.|++.|+.+++|+||+++.+.+.++.. .+.+||+-.....+..+..+.+..|.+|..+|+..+..+...++.
T Consensus 340 ~pi~~P~~~~~Gidpi~~g~~~~~~~~-ig~iTPPvgl~lfva~~ia~~~~~~i~~~~~Pf~~~~~~~l~li~ 411 (416)
T PF06808_consen 340 APILAPIAQALGIDPIHFGVFMFYNAE-IGLITPPVGLNLFVAAGIAGVPMEKIFRGILPFIFVLLVALLLIT 411 (416)
T ss_pred HHHHHHHHHHhCcchhhHHHHHHHHHH-hcCCCCCccHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999887 788898765555566677789999999999999998777766553
|
In general, C4-dicarboxylate transport systems allow C4-dicarboxylates like succinate, fumarate, and malate to be taken up. TRAP C4-dicarboxylate carriers are secondary carriers that use an electrochemical H+ gradient as the driving force for transport. DctM is an integral membrane protein that is one of the constituents of TRAP carriers [, ]. Note that many family members are hypothetical proteins. |
| >TIGR00785 dass anion transporter | Back alignment and domain information |
|---|
Probab=99.87 E-value=9.1e-22 Score=212.20 Aligned_cols=282 Identities=17% Similarity=0.125 Sum_probs=228.9
Q ss_pred CCccCCCCCCCCCCCCCCccccccccccccCcCCCCCccccccccCCCCCCCCCCCCCCCcccchhHHHHHH--------
Q 008532 31 KPISKSPPSIFPSHSRSFPTLRSRSLSLSRPHIIRPIHSSSQNDTASTVPPTNLPSPPPPRGAKLLPFVISI-------- 102 (562)
Q Consensus 31 ~p~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~i~~-------- 102 (562)
-||..++.+.++.+|++++||.++++++......+..+...+++..+|....+..++..+.+.++..|...-
T Consensus 130 ~Pi~~~i~~~~g~~~~~~~~~~~~~l~~~~~~~a~~g~~~t~~g~~~n~i~~~~~~~~~g~~i~~~~~~~~~~p~~ii~~ 209 (444)
T TIGR00785 130 LPIIKSLLPLLGSKPEKSPRKIGKYLMLGIAYSASIGSSGFLTGSAPNALAAGILSKILGIQISWGDWFLAGLPLGIILL 209 (444)
T ss_pred HHHHHHHHHHhCCCCCcccchHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCcCHHHHHHHHhHHHHHHH
Confidence 478888999999999888899999998887777776677778888899987666566556667777775443
Q ss_pred -HHHHHHHHhcCCC------------------CCCCHHHHHHHHHHHHHHHHHhhc---CCChHHHHHHHHHHHHHhcCC
Q 008532 103 -SIGLILRFLVPKP------------------VEVSPQAWQLLSIFLSTIAGLVLS---PLPVGAWAFLGLTTSIVTRTL 160 (562)
Q Consensus 103 -~~~l~~~~~~p~p------------------~~ls~~~~~~l~i~~~~i~lw~~~---~~p~~~~all~~~ll~l~gv~ 160 (562)
...+..++++|+. +.++.+|+..+.+++.++++|+++ ++|.+++++++..++.++|..
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~v~~~~i~~~~~~~~~~~~~~~~al~~~~ll~~~g~~ 289 (444)
T TIGR00785 210 LLVPLLLYVLFPPELKLKDEVDLWAKEELEEMGPMSFREKALLGIFLLALLLWIFGGSLGINASVVALLAVVLMLFLGIV 289 (444)
T ss_pred HHHHHHHHHHcCccccCCccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHhCcc
Confidence 1122233455521 046789999999999999999998 588999999999999999999
Q ss_pred ChHHHHHh-ccchHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhCC-C-hhhHHHHHHHHHHHhhhcCCChhhhhhHhH
Q 008532 161 AFPTAFAA-FTNEVIWLIVISFFFARGFVKTGLGDRIATYFVKWLGK-S-TLGLSYGLTFSEALIAPAMPSTTARAGGVF 237 (562)
Q Consensus 161 ~~~~~~~~-~~~~~i~li~~~~~la~al~~tGl~~ria~~i~~~~g~-~-~~~l~~~l~l~~~~ls~~~~s~~a~~~~i~ 237 (562)
++||+.+. .+|++++++.+++.++.+++++|+.||+++++.+..++ + +..+...+++...+++.+.+|+++ + .++
T Consensus 290 ~~~~~~~~~v~w~~l~~~~g~~~l~~~l~~sG~~~~i~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~s~~~~-~-~i~ 367 (444)
T TIGR00785 290 TWKDIQKNKVAWNTLILFGGLIGLAGGLKKSGFIKWFSEKLVGILDGLSPTIAVLVLVVLFYIILYFFASNTAH-T-AAL 367 (444)
T ss_pred cHHHHhhccCCcHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhHHHH-H-HHH
Confidence 99999985 89999999999999999999999999999999998854 4 444556677778888888877764 4 699
Q ss_pred HHHHHHHHHHcCCCCCCCCcchhhhHHHHHhHHhhhhhcccccccchhHHHHHHHHHHcCCcccccHHHHHHHHHHHHHH
Q 008532 238 LPIIKSLSLSAGSKPGDSSSKKLGSYLIQSQFQSAGNSSALFLTAAAQNLLCLKLAEELGVIISSPWVSWFKAACVPALV 317 (562)
Q Consensus 238 ~Pi~~~i~~~~g~~p~~~~~~~~~~~l~l~~~~~~~~~g~~t~~g~~~n~i~~g~~~~~G~~i~~~~~~w~~~~~~~~li 317 (562)
.|++.+++++.|.+| ..+.+....+++.++..+|+|+++|.+.++. |+ ++ +.||++.+.|..++
T Consensus 368 ~Pi~~~ia~~~G~~p---------~~~~~~~~~~~~~~~~~tP~~s~~n~i~~~~----g~-~~--~~~~~k~~~p~~l~ 431 (444)
T TIGR00785 368 VPIFFSVASAQGIPL---------ELLALALALSASLMGFLTPYATPPNAIAYGS----GY-VK--IKDMWRVGAIIGIV 431 (444)
T ss_pred HHHHHHHHHHcCCCH---------HHHHHHHHHHHHHHHHhcCCCCCccceeecC----CC-cc--HHHHHHhHHHHHHH
Confidence 999999999999987 3466777788888888999999999887654 43 78 99999999999999
Q ss_pred HHHHHHHHHHHhc
Q 008532 318 ALLATPLILYKLY 330 (562)
Q Consensus 318 ~~~~~~~~~~~~~ 330 (562)
..++...+.+.||
T Consensus 432 ~~~~~~~~~~~~w 444 (444)
T TIGR00785 432 GLIVLLLVGTLWW 444 (444)
T ss_pred HHHHHHHHHHHhC
Confidence 8888887777654
|
Functionally characterized proteins of the DASS family transport (1) organic di- and tricarboxylates of the Krebs Cycle as well as dicarboxylate amino acid, (2) inorganic sulfate and (3) phosphate. The animal NaDC-1 cotransport 3 Na+ with each dicarboxylate. Protonated tricarboxylates are also cotransported with 3Na+. |
| >TIGR00771 DcuC c4-dicarboxylate anaerobic carrier family protein | Back alignment and domain information |
|---|
Probab=99.86 E-value=8.6e-19 Score=183.92 Aligned_cols=355 Identities=12% Similarity=0.026 Sum_probs=232.0
Q ss_pred HHHHHhccchHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhC--CChhhHHHHHHHHHHHhhhcCCChhhhhhHhHHHH
Q 008532 163 PTAFAAFTNEVIWLIVISFFFARGFVKTGLGDRIATYFVKWLG--KSTLGLSYGLTFSEALIAPAMPSTTARAGGVFLPI 240 (562)
Q Consensus 163 ~~~~~~~~~~~i~li~~~~~la~al~~tGl~~ria~~i~~~~g--~~~~~l~~~l~l~~~~ls~~~~s~~a~~~~i~~Pi 240 (562)
++.+++-..++-.+++....++..++++|..|.+.+.+.|..+ ++|..+..+..+++.+++...++++..+ .+..|.
T Consensus 12 ~~~~~~~~~~~g~~i~~~~gf~~~M~~~G~~~~lv~~~~k~~~~~~~p~~v~~~t~~i~~~~~l~~~sat~~~-li~~~~ 90 (388)
T TIGR00771 12 LRMLSNRIAGLGLSIMAVGGYARYMERIGASRAMVSLLSRPLKLIRSPYIILSATYVIGQIMAQFITSASGLG-MLLMVT 90 (388)
T ss_pred HHHHHhcchhhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhhccCcHHHHH-HHHHHH
Confidence 5566766788999999999999999999999999999999999 8999999999999999999999998765 588999
Q ss_pred HHHHHHHcCCCCCCCCcchhhhHHHHHhHHhhhhhcccccccchhHHHHHHHHHHcCCcccccHHHHHHHHHHHHHHHHH
Q 008532 241 IKSLSLSAGSKPGDSSSKKLGSYLIQSQFQSAGNSSALFLTAAAQNLLCLKLAEELGVIISSPWVSWFKAACVPALVALL 320 (562)
Q Consensus 241 ~~~i~~~~g~~p~~~~~~~~~~~l~l~~~~~~~~~g~~t~~g~~~n~i~~g~~~~~G~~i~~~~~~w~~~~~~~~li~~~ 320 (562)
.+++.++.|++|. ...++...+ .+-...|.+.+ ..++. +..|. + -.|++.....++.+..+
T Consensus 91 l~P~l~~~G~~~~----------~aaavia~~-~~l~i~P~~~~---~~~aa-~~~~~--~--~~~~~~~~~ip~~i~~i 151 (388)
T TIGR00771 91 LFPTLVSLGVSRL----------SAVAVMASP-GSIHSAMISEM---SGLAA-QQVNM--S--HAPYNFHYMLPGAIGAI 151 (388)
T ss_pred HHHHHHHcCCCHH----------HHHHHHHhh-hcccCCCcchH---HHHHH-HHhCC--C--HHHHHHHhHHHHHHHHH
Confidence 9999999999863 111221121 11133333332 23332 11354 4 55866666555555544
Q ss_pred HHHHHHH-HhcCCCCCCCCChhHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHhcCCCC---CChHHHHHHHHHH----
Q 008532 321 ATPLILY-KLYPPEVKDTPDAPAMAAKKLKQLGPVTRNEWIMVGTMLLAVSLWIFGDALG---IPSVVAAMIGLSI---- 392 (562)
Q Consensus 321 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~e~~~l~i~~~~i~l~i~~~~~g---i~~~~vall~~~l---- 392 (562)
+...+.. ++.|+++|+....++. +.+.+|.. -.++-......+...+++.++.+... .+..+.+.++..+
T Consensus 152 ~~~~~~~~~~~k~~~kr~~~~~~~-~~~~~~~~-~~~~~~~allpl~p~iil~l~~g~~t~~~~~~~~~~~v~v~~~~~l 229 (388)
T TIGR00771 152 ILTAIAHFFKQRGEDKKQAYIAHE-KESEIKVI-EGVPVLYAILPLIPLIILLLFIGGTGLQQVPLHEWTKMGVPQAMLI 229 (388)
T ss_pred HHHHHHHHHHhcccchhccccccc-ccccchhh-cccchHHHHHHHHHHHHHHHHhccccccCCCccHHHHHHHHHHHHH
Confidence 4444444 4434333321110000 00111111 11122222322222222234455433 4445555555443
Q ss_pred -HHHhCCcChHHHhhc---------cCChhHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHhhccCCCchHHHHHHHHHHH
Q 008532 393 -LLLLGVLDWDDCLSE---------KSAWDTLAWFAVLVGMAGQLTNLGIVTWMSDSVAKCLQSFSLSWPAAFGVLQASY 462 (562)
Q Consensus 393 -l~~~gvl~~~~~~~~---------~i~w~~l~l~~~~~~l~~~l~~tGi~~~ia~~l~~~~~~~~~~~~~~~~~l~~~~ 462 (562)
....+..++++..++ +..-.+++++.++..+++.++.+|+.|.+++.+.+.. . +. ....++....
T Consensus 230 ~~~~~r~~n~~~~~~~~~~~~~~~a~~~~~v~~iI~aA~vF~~~L~~~Gi~~~l~~~l~~~~-~---~~-~~~ll~~~l~ 304 (388)
T TIGR00771 230 GAEFGRIVNRISPVKITEEFFNGMGNSFANVVGLIVAASVFAAGLKTIGAVDAAISFAKESG-L---GN-IFVMWGATIG 304 (388)
T ss_pred HHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHcC-C---CH-HHHHHHHHHH
Confidence 223456677765421 1113478888999999999999999999999998862 1 22 2333333333
Q ss_pred HHHHHHhc-hhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhhhhhccccchhhHHhhcCCCCCHHHHHHHhHHHH
Q 008532 463 FLIHYLFA-SQTGHVGALYSAFLAMHLAAGVPGVLAALALAYNTNLFGAITHYSSGQAAVYYGAGYIDLPDVFKMGFTMA 541 (562)
Q Consensus 463 ~~~~~~f~-S~~a~~~il~Pi~~~la~~~Gv~p~~~~l~l~~~~~~~~~~tP~~s~~n~i~~~~g~i~~~d~~k~g~~~~ 541 (562)
.....+++ |+++....+.|++.++++++|+||.+++.++..+.+ .+..+|+-++...+..+..+++..|.+|..+|..
T Consensus 305 ~~~lg~~~~s~~a~~~~~~PIl~pia~~~Gidpv~~gi~~~i~~~-iG~~tpPv~~~l~v~~gia~v~~~~i~k~~~~p~ 383 (388)
T TIGR00771 305 PFLMALITGSGNAPFIAFNTAIPPHAVELGYTHVNLGMPMAIAGA-LGRTASPIAGVVVVCAGLAMVSPFEVVKRTAPPM 383 (388)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH-HhCcCCcHHHHHHHHHhhcCCCHHHHHHHHHHHH
Confidence 33344577 689999999999999999999999999999999887 5566666555556667788899999999999988
Q ss_pred HHHH
Q 008532 542 LVNA 545 (562)
Q Consensus 542 li~~ 545 (562)
++..
T Consensus 384 ~~~~ 387 (388)
T TIGR00771 384 IVGV 387 (388)
T ss_pred HHhc
Confidence 8764
|
catalyzing fumarate-succinate exchange and fumarate uptake. |
| >TIGR02123 TRAP_fused TRAP transporter, 4TM/12TM fusion protein | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.1e-17 Score=177.76 Aligned_cols=353 Identities=15% Similarity=0.066 Sum_probs=245.4
Q ss_pred hHHHHHHHHHHH-HHHHHHhCHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhhhcCCChhhhhhHhHHHHHHHHHHHcCC
Q 008532 172 EVIWLIVISFFF-ARGFVKTGLGDRIATYFVKWLGKSTLGLSYGLTFSEALIAPAMPSTTARAGGVFLPIIKSLSLSAGS 250 (562)
Q Consensus 172 ~~i~li~~~~~l-a~al~~tGl~~ria~~i~~~~g~~~~~l~~~l~l~~~~ls~~~~s~~a~~~~i~~Pi~~~i~~~~g~ 250 (562)
++...++..|++ ++.++++|..||+-+......|+.+.+....-.+.+.+++....|..|.+ +..-.+.++..||.||
T Consensus 165 ~vsa~~i~lFil~G~ll~~~G~~~~li~~a~~l~G~~rGGla~vaV~as~lfg~iSGS~~A~v-a~~G~itiP~Mkk~GY 243 (613)
T TIGR02123 165 QVSATYIFLFILFGAFLQKSGVGKFFIDLAFALAGKRRGGPAKVAVISSGLMGMISGSSVANV-VTTGSFTIPLMKRAGY 243 (613)
T ss_pred HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhccchHHHHH-HHHHHHHHHHHHHcCC
Confidence 344455666555 67899999999999999999999999999999999999999999999987 5889999999999999
Q ss_pred CCCCCCcchhhhHHHHHhHHhhhhhcccccccchhHHHHHHHHHHcCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 008532 251 KPGDSSSKKLGSYLIQSQFQSAGNSSALFLTAAAQNLLCLKLAEELGVIISSPWVSWFKAACVPALVALLATPLILYKLY 330 (562)
Q Consensus 251 ~p~~~~~~~~~~~l~l~~~~~~~~~g~~t~~g~~~n~i~~g~~~~~G~~i~~~~~~w~~~~~~~~li~~~~~~~~~~~~~ 330 (562)
+++ ..-++-.+++.+|...|...+...+.++.. .| ++ ..|.+..++.|+++.......+.+...
T Consensus 244 ~~~----------~Aaav~AaastlG~iiPPsmg~~afi~a~~--~~--vs--~~~lf~AgiiPgll~~~~l~~~v~~~a 307 (613)
T TIGR02123 244 KPE----------FAGAVEAAASTGGQIMPPIMGAAAFIMAEF--LG--IP--YTEIIIAAIIPALLYFFGVFMQVHLEA 307 (613)
T ss_pred CHH----------HHHHHHHHhhhcccccCchHHHHHHHHHHH--hC--CC--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 864 333444555556666665443333343322 35 56 889999999999998777776666655
Q ss_pred CCCCCCCCChhHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHH-------hCCcChHH
Q 008532 331 PPEVKDTPDAPAMAAKKLKQLGPVTRNEWIMVGTMLLAVSLWIFGDALGIPSVVAAMIGLSILLL-------LGVLDWDD 403 (562)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~g~~t~~e~~~l~i~~~~i~l~i~~~~~gi~~~~vall~~~ll~~-------~gvl~~~~ 403 (562)
||++.+ +..++..++..+. .++...+.+.++.+...+... ..+++.+..++...++ .+.+++||
T Consensus 308 ~k~~~~-~~~~~~~~~~~~~-----~~~~~~lllPvivL~~il~~g---~TpteAa~~a~~~al~v~~~~~~~r~l~~~~ 378 (613)
T TIGR02123 308 KKQGLK-GLSKEQLPSPKTV-----LKAGWYLLIPLVLLIVLLLVG---YSPIRAAFYSIALTLIVSLLSRKDTRMGLGE 378 (613)
T ss_pred HhCCCC-CCCchhhHHHHHH-----HHHHHHHHHHHHHHHHHHHcC---cCHHHHHHHHHHHHHHHHHHHHhccCcCHHH
Confidence 543322 1111111111111 122223333333333332333 4566655555543333 24567776
Q ss_pred Hhhc-----cCChhHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHhhccCCCchHHHHHHHHHHHHHHHHHhchhHHHHHH
Q 008532 404 CLSE-----KSAWDTLAWFAVLVGMAGQLTNLGIVTWMSDSVAKCLQSFSLSWPAAFGVLQASYFLIHYLFASQTGHVGA 478 (562)
Q Consensus 404 ~~~~-----~i~w~~l~l~~~~~~l~~~l~~tGi~~~ia~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~f~S~~a~~~i 478 (562)
..+. +..-.+.+.++++..+++.++.+|+.+.+++.+.+..+++ +..++++..+..+...+++++++...+
T Consensus 379 l~~~l~~~a~~~~~I~~iia~a~i~~~~lt~tGl~~~l~~~i~~l~~~~----~~~~Lll~~l~~lilGm~l~~~a~~ii 454 (613)
T TIGR02123 379 IFGALEDGARNAVPVAAACAGAGIIIGVVTLTGLGLKISNDLLDLAGGN----LFLLLILTMIACIILGMGLPTTANYII 454 (613)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHccCCC----HHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 5421 1224577888888999999999999999999999864322 233444444444556679999999999
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhhhhhhccccchhhHHhhcCCCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 008532 479 LYSAFLAMHLAAGVPGVLAALALAYNTNLFGAITHYSSGQAAVYYGAGYIDLPDVFKMGFTMALVNAIIWGVTGTFWWK 557 (562)
Q Consensus 479 l~Pi~~~la~~~Gv~p~~~~l~l~~~~~~~~~~tP~~s~~n~i~~~~g~i~~~d~~k~g~~~~li~~vi~~~v~~~~w~ 557 (562)
+.|++.|..+++|+||+++.+.+.+... .+.+||+-........+..+.+..|..|..+++.+..+++..++ .|+|
T Consensus 455 ~~pi~~P~l~~lGidpi~~~~~v~~~~~-ig~iTPPvgl~lfvaa~Ia~~~~~~~~~~~~p~~~~~~~~~~l~--~~~P 530 (613)
T TIGR02123 455 TATLAAPALIALGVPPIAAHMFVFYFGI-LADITPPVALAAFAAAGIAGADPMKTGFEAFKLALAGYLVPFMF--VYNP 530 (613)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHH-HHcCCCCchHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHH--HHhH
Confidence 9999999999999999999999988886 78888875554445566778899999999999999887775544 4444
|
In some species, the 12-transmembrane spanning and 4-transmembrane spanning components of tripartite ATP-independent periplasmic (TRAP)-type transporters are fused. This model describes such transporters, found in the Archaea and in Bacteria. |
| >TIGR00770 Dcu anaerobic c4-dicarboxylate membrane transporter family protein | Back alignment and domain information |
|---|
Probab=99.84 E-value=9.5e-18 Score=177.61 Aligned_cols=364 Identities=15% Similarity=0.137 Sum_probs=244.2
Q ss_pred hcCCChHHHHHHHHHHHHHhcCCChHHHHHhccchHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhCCChhhHHHHHHH
Q 008532 138 LSPLPVGAWAFLGLTTSIVTRTLAFPTAFAAFTNEVIWLIVISFFFARGFVKTGLGDRIATYFVKWLGKSTLGLSYGLTF 217 (562)
Q Consensus 138 ~~~~p~~~~all~~~ll~l~gv~~~~~~~~~~~~~~i~li~~~~~la~al~~tGl~~ria~~i~~~~g~~~~~l~~~l~l 217 (562)
.+.+..+..+-+++.++.+.=.++|++ .+.++++++++.....+.++|||..|+..+++.++.++++++..+.+.+
T Consensus 15 ~gg~~~g~~g~~g~~~~~~~~~~~~~~----~~~~vI~~il~vgg~~~vl~~TGaid~~v~~~~k~~~~~~~~~~llipi 90 (430)
T TIGR00770 15 LGGIGLGYAGGLGVLILCFGFGLKPGK----IPFDVILIIMAVIAAIAAMQAAGGLDYLVQIAEKLLRRNPKYITILAPS 90 (430)
T ss_pred hhhHHHHHHHHHHHHHHHHHcCCCCCC----CCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCcchhhhhHHH
Confidence 344667777777777776652355554 5889999999999999999999999999999999988888888888888
Q ss_pred HHHHhhhcCCChhhhhhHhHHHHHHHHHHHcCCCCCCCCcchhhhHHHHHhHHhhhhhcccccccchhHHHHHHHHHHcC
Q 008532 218 SEALIAPAMPSTTARAGGVFLPIIKSLSLSAGSKPGDSSSKKLGSYLIQSQFQSAGNSSALFLTAAAQNLLCLKLAEELG 297 (562)
Q Consensus 218 ~~~~ls~~~~s~~a~~~~i~~Pi~~~i~~~~g~~p~~~~~~~~~~~l~l~~~~~~~~~g~~t~~g~~~n~i~~g~~~~~G 297 (562)
...+++.+.++.... ..+.|+..++++++|+||. +.+ .....++++|+.+++.++++|.. .+.++..|
T Consensus 91 i~~lfs~~~g~~~~~--l~f~PI~i~la~~lG~d~i--------~~~-ai~~~aa~iG~~as~in~~~~~~-ig~~~~~G 158 (430)
T TIGR00770 91 VTYFLTILAGTGHVV--YSTLPVIAEVAKEQGIKPE--------RPL-SLAVVSSQIAITASPVSAAVVFM-SAILEPLG 158 (430)
T ss_pred HHHHHHHHhchHHHH--HHHHHHHHHHHHHhCCCCh--------hHH-HHHHHHHHHHHHhhcccHHHHHH-HHHHHhCC
Confidence 899999988775443 6899999999999999885 223 44568889999999997754444 44443234
Q ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCChhHHH-HHHh-----hhcCCCCHHHHHHHHHHHHHHHH
Q 008532 298 VIISSPWVSWFKAACVPALVALLATPLILYKLYPPEVKDTPDAPAMA-AKKL-----KQLGPVTRNEWIMVGTMLLAVSL 371 (562)
Q Consensus 298 ~~i~~~~~~w~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-----~~~g~~t~~e~~~l~i~~~~i~l 371 (562)
++ +.+++....|..++...+..++.+++.| |.++.|+.++.. +++. ++..++|+|+|..+.+|++.+..
T Consensus 159 --i~--f~~~l~~rip~~~v~l~v~~~~v~~y~~-kvkkdP~~~~~~~~~~~~~~~~~~~~~~t~r~k~~l~~f~~~~~~ 233 (430)
T TIGR00770 159 --IE--YLDLLMVTIPSTFLGCMLTAFFVNFFGK-KLDKDPEYQERLKAGKIVPTRGKKEKETSKSAKLSVWIFLGGVVA 233 (430)
T ss_pred --CC--HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCChhhhhhhhhhhhcccccccccCCCHhHHHHHHHHHHHHHH
Confidence 67 9999999999888877776665444433 222223211110 1111 11236899999999999998886
Q ss_pred HH-hcCC----CCCC--h-----H---HHHHHHHHHHHHhCCcChHHHhh--ccCCh--hHHHHHHHHHHHHHHHHH---
Q 008532 372 WI-FGDA----LGIP--S-----V---VAAMIGLSILLLLGVLDWDDCLS--EKSAW--DTLAWFAVLVGMAGQLTN--- 429 (562)
Q Consensus 372 ~i-~~~~----~gi~--~-----~---~vall~~~ll~~~gvl~~~~~~~--~~i~w--~~l~l~~~~~~l~~~l~~--- 429 (562)
.+ .+.. .+.+ . . ...+...++..+.+-++.+|..+ .-.+- +.+. .+++++ +.+
T Consensus 234 ~vi~G~~~~~~~~~~~~~~~~~~~~i~~~fl~~~i~~g~i~~~~~~~i~~~~~F~~G~~~~~~----~iG~A~-~~~~~~ 308 (430)
T TIGR00770 234 VVLYAAAISKRPGFVGKPILGMDHAIVMFMLSVATLIIIFCKIDTDAILKSSVFKSGMQACIC----VLGVAW-LGDTFV 308 (430)
T ss_pred HHHHHhcccccCCCCCCcccchHHHHHHHHHHHHHHHHHHhCCCHHHcccHHHHHHHHHHHHh----eeeehh-hhhhhH
Confidence 54 4331 1111 1 1 22244445555566788888643 11111 1222 155565 444
Q ss_pred hCHHHHHHHHHHHhhccCCCchHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhhh
Q 008532 430 LGIVTWMSDSVAKCLQSFSLSWPAAFGVLQASYFLIHYLFASQTGHVGALYSAFLAMHLAAGVPGVLAALALAYNTNLFG 509 (562)
Q Consensus 430 tGi~~~ia~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~f~S~~a~~~il~Pi~~~la~~~Gv~p~~~~l~l~~~~~~~~ 509 (562)
..+.|.+.+.+.+.+++.+ + .....+. +....+.| .+++.. +..|+++..|+++...+++..++.+ .
T Consensus 309 g~i~dtIv~~l~~~l~~~p--~-~~a~~mf----~~~~~i~s---QAa~tm-im~PLad~lGi~rq~~Vlafq~gdG-~- 375 (430)
T TIGR00770 309 SNHIDEIKGYAGELIEGYP--W-LLAVALF----LASMLLYS---QAATAK-ALIPVALALGVSPYTIVASFAAVSG-L- 375 (430)
T ss_pred HHHHHHHHHHHHHHHhhCc--H-HHHHHHH----HHHHHHhh---HHHHHH-HHHHHHHHcCCCHHHHHHHHHHhcc-c-
Confidence 3688999999998888753 2 1222222 22222333 333334 5999999999999999998888775 2
Q ss_pred hhccccchhhHHhhcCCCCCHHHHHHHhHHHH
Q 008532 510 AITHYSSGQAAVYYGAGYIDLPDVFKMGFTMA 541 (562)
Q Consensus 510 ~~tP~~s~~n~i~~~~g~i~~~d~~k~g~~~~ 541 (562)
+++|.+ +..+...+..++++.+|.|+.++..
T Consensus 376 ~i~PTs-g~lma~l~~a~i~~~kw~Kfi~~~~ 406 (430)
T TIGR00770 376 FVLPTY-PTLLAAIQMDDTGTTKIGKFVFNHS 406 (430)
T ss_pred EEcCCc-HhHhHHHhccCCCcchHHHHHhchH
Confidence 777763 3334445778899999999988843
|
These proteins are members of th C4-Dicarboxylate Uptake (Dcu) Family (TC 2.A.13). Most proteins in this family have 12 GES predicted transmembrane regions; however one member has 10 experimentally determined transmembrane regions with both the N- and C-termini localized to the periplasm. The two Escherichia coli proteins, DcuA and DcuB, transport aspartate, malate, fumarate and succinate, and function as antiporters with any two of these substrates. Since DcuA is encoded in an operon with the gene for aspartase, and DcuB is encoded in an operon with the gene for fumarase, their physiological functions may be to catalyze aspartate:fumarate and fumarate:malate exchange during the anaerobic utilization of aspartate and fumarate, respectively. |
| >PRK10654 dcuC C4-dicarboxylate transporter DcuC; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.6e-17 Score=171.55 Aligned_cols=359 Identities=15% Similarity=0.112 Sum_probs=229.9
Q ss_pred chHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhCC--ChhhHHHHHHHHHHHhhhcCCChhhhhhHhHHHHHHHHHHHc
Q 008532 171 NEVIWLIVISFFFARGFVKTGLGDRIATYFVKWLGK--STLGLSYGLTFSEALIAPAMPSTTARAGGVFLPIIKSLSLSA 248 (562)
Q Consensus 171 ~~~i~li~~~~~la~al~~tGl~~ria~~i~~~~g~--~~~~l~~~l~l~~~~ls~~~~s~~a~~~~i~~Pi~~~i~~~~ 248 (562)
......++....++..++++|..|.+.+...+..++ +|+.++...++++.+++.+++|..... .+++-+.+++.+++
T Consensus 77 ~~lGl~Im~~~gFa~yM~~iGa~~~lv~l~~~pl~~ir~p~~~l~~~~l~~~~~~~~i~Sa~glg-~~lm~~l~Pvl~~~ 155 (455)
T PRK10654 77 GDLGMMIMMLCGFAAYMTHIGANDMVVKLASKPLQYINSPYLLMIAAYFVACLMSLAVSSATGLG-VLLMATLFPVMVNV 155 (455)
T ss_pred ccHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHhhHHHHH-HHHHHHHHHHHHhC
Confidence 556667888888999999999999999988888765 578888888999999999999998765 57777888888899
Q ss_pred CCCCCCCCcchhhhHHHHHhHHhhhhhcccccccchhHHHHHHHHHHcCCcccccHHHHHH-HHHHHHHHHHHHHHHHHH
Q 008532 249 GSKPGDSSSKKLGSYLIQSQFQSAGNSSALFLTAAAQNLLCLKLAEELGVIISSPWVSWFK-AACVPALVALLATPLILY 327 (562)
Q Consensus 249 g~~p~~~~~~~~~~~l~l~~~~~~~~~g~~t~~g~~~n~i~~g~~~~~G~~i~~~~~~w~~-~~~~~~li~~~~~~~~~~ 327 (562)
|.+|. ..-+ ..++..+-...|.. ..|.++++. .|. + ..|++. +..|..+..+++..+..+
T Consensus 156 Gv~~~----------~aa~-v~~~~~g~~~~P~s-~~~~laA~~---~g~--~--~~~~~~~~~~p~~i~~~i~~~i~~~ 216 (455)
T PRK10654 156 GISRG----------AAAA-ICASPAAIILSPTS-GDVVLAAEA---SEM--P--LIDFAFKTTLPISIAAIIGMAIAHF 216 (455)
T ss_pred CCCHH----------HHHH-HHHHHhcccCCCCc-chHHHHHHH---hCC--C--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99763 1122 23333344444444 444444443 464 4 556655 445555555555555555
Q ss_pred HhcCCCCCCCCChhHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHhcCCCCCChHHHH-----HHHHHHHHHhCCcChH
Q 008532 328 KLYPPEVKDTPDAPAMAAKKLKQLGPVTRNEWIMVGTMLLAVSLWIFGDALGIPSVVAA-----MIGLSILLLLGVLDWD 402 (562)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~e~~~l~i~~~~i~l~i~~~~~gi~~~~va-----ll~~~ll~~~gvl~~~ 402 (562)
+|.|..+++.....+. + +.++... ..+.+..+.=++-.+.+.++++..+....... ++...++-..+..++|
T Consensus 217 ~~~~~~dkk~~~~~~~-~-~~~~~~~-~~p~~yallPllPLilll~f~~~~~~~~~v~~~~~~s~~i~~~~~~~r~~~~k 293 (455)
T PRK10654 217 FWQRYLDKKENISHEM-L-DVSEITT-TAPAFYAILPFTPIIGVLIFDGKWGPQLHIITILVICMLLAAVLEFLRSFNTK 293 (455)
T ss_pred HHhHHHHhhccccccc-c-ccchhcc-ccccHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHhCCCHH
Confidence 5544222221111110 1 1111111 11223333222222223324443222222222 1111222234788999
Q ss_pred HHhhccCCh----------hHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHhhccCCCchHHHHHHHHHHHHHHHHHhchh
Q 008532 403 DCLSEKSAW----------DTLAWFAVLVGMAGQLTNLGIVTWMSDSVAKCLQSFSLSWPAAFGVLQASYFLIHYLFASQ 472 (562)
Q Consensus 403 ~~~~~~i~w----------~~l~l~~~~~~l~~~l~~tGi~~~ia~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~f~S~ 472 (562)
|+.+ .++. +++.++.++..++++++.+|+.|.+.+.+.+. +..+ ....+++.+..++....-.|+
T Consensus 294 ~v~~-~l~~~~~GMg~~~a~Vv~liiaAgvfs~gL~~~Gl~~~l~~~l~~l-g~~~---~~illv~~il~~l~~~~~GSg 368 (455)
T PRK10654 294 KVFS-GLEVAYRGMADAFAGVVMLLVAAGVFAQGLSTIGFIQSLISLATSF-GSAG---IILMLVLVILTMLAAITTGSG 368 (455)
T ss_pred HHHH-HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHc-CCCh---HHHHHHHHHHHHHHHHHccch
Confidence 9854 4444 58889999999999999999999999999986 3321 222333333333333334599
Q ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhhhhhccccchhhHHhhcCCCCCHHHHHHHhHHHHHHHHHHHHHHH
Q 008532 473 TGHVGALYSAFLAMHLAAGVPGVLAALALAYNTNLFGAITHYSSGQAAVYYGAGYIDLPDVFKMGFTMALVNAIIWGVTG 552 (562)
Q Consensus 473 ~a~~~il~Pi~~~la~~~Gv~p~~~~l~l~~~~~~~~~~tP~~s~~n~i~~~~g~i~~~d~~k~g~~~~li~~vi~~~v~ 552 (562)
.+...++.|++.++++++|+||..++.++..+++.+....|. ++......+.++++..|.+|...+..++..++..+..
T Consensus 369 ~a~~~af~pi~~pia~~lG~~pv~~~~~~~~~~~~G~~~sPv-s~~ii~~ag~a~~~~~~ivKrt~ip~ii~~iv~~i~~ 447 (455)
T PRK10654 369 NAPFYAFVELIPKLAHSSGINPAYLTIPMLQASNLGRTISPV-SGVVVAVAGMAKISPFEVVKRTSVPVLVGLLIVIVAT 447 (455)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCcCCcc-hhhHhhhhcccCCCHHHHHHhhhHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999854444444 4444455577889999999998888888887777766
Q ss_pred HHHHHH
Q 008532 553 TFWWKF 558 (562)
Q Consensus 553 ~~~w~~ 558 (562)
+.++|+
T Consensus 448 ~~~~p~ 453 (455)
T PRK10654 448 EIMVPG 453 (455)
T ss_pred HHHhcC
Confidence 666654
|
|
| >PRK11588 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.3e-17 Score=172.53 Aligned_cols=360 Identities=13% Similarity=0.076 Sum_probs=233.4
Q ss_pred hHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhhhcCCChhhhhhHhHHHHHHHHHHHcCCC
Q 008532 172 EVIWLIVISFFFARGFVKTGLGDRIATYFVKWLGKSTLGLSYGLTFSEALIAPAMPSTTARAGGVFLPIIKSLSLSAGSK 251 (562)
Q Consensus 172 ~~i~li~~~~~la~al~~tGl~~ria~~i~~~~g~~~~~l~~~l~l~~~~ls~~~~s~~a~~~~i~~Pi~~~i~~~~g~~ 251 (562)
+++++++..--.-..++|||..|..-.++.++.+++...++..++.+..+.+....-.... ..++|+...++.++|+|
T Consensus 111 ~ii~filiiGG~f~vi~~TGAi~~~i~~l~~k~~~~~~llIpil~~lFsl~G~~~G~~Ee~--i~f~pi~v~l~~alGyD 188 (506)
T PRK11588 111 GIIMFMLVIGGAFGIVMRTGTIDNGILALIRKTRGNEILFIPVLFILFSLGGAVFGMGEEA--IAFAIIIAPLMVRLGYD 188 (506)
T ss_pred ceeehhhHHhhHHHHHHHhchHHHHHHHHHHHhCCCcEEeHHHHHHHHHHHHHHhhhhHHH--HHHHHHHHHHHHHhCCc
Confidence 5666555544455778999999999999999999888788888888888887776554433 58999999999999998
Q ss_pred CCCCCcchhhhHHHHHhH-HhhhhhcccccccchhHHHHHHHHHH-cCCcccccHHHHHHHHH--HHHHHHHHHHHHHHH
Q 008532 252 PGDSSSKKLGSYLIQSQF-QSAGNSSALFLTAAAQNLLCLKLAEE-LGVIISSPWVSWFKAAC--VPALVALLATPLILY 327 (562)
Q Consensus 252 p~~~~~~~~~~~l~l~~~-~~~~~~g~~t~~g~~~n~i~~g~~~~-~G~~i~~~~~~w~~~~~--~~~li~~~~~~~~~~ 327 (562)
+- ...++. .++..|. .++..|+...+.+++ +|.++. -+-+++.-. ...++.....+.+..
T Consensus 189 ~i----------vg~ai~~lg~~iGf----~~s~~NPftvgIAQ~iAglp~~--SG~~~R~i~~~v~~~i~i~yv~~YA~ 252 (506)
T PRK11588 189 SI----------TTVLVTYVATQIGF----ATSWMNPFSVAIAQGIAGVPVL--SGSGLRIVMWVIFTLIGLIFTMVYAS 252 (506)
T ss_pred HH----------HHHHHHHHHhhhhh----cccccCccHHHHHHHhcCCCcc--ccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 63 222222 2333222 234567777887777 787665 344444322 222222222333333
Q ss_pred HhcCCCCCC-CCChhHHHHHHhh--hcCCCCHHHHHHHHHHHHHHHHHHhcCCC-CCChHHHHHHHH---HHHHHh----
Q 008532 328 KLYPPEVKD-TPDAPAMAAKKLK--QLGPVTRNEWIMVGTMLLAVSLWIFGDAL-GIPSVVAAMIGL---SILLLL---- 396 (562)
Q Consensus 328 ~~~~~~~~~-~~~~~~~~~~~~~--~~g~~t~~e~~~l~i~~~~i~l~i~~~~~-gi~~~~vall~~---~ll~~~---- 396 (562)
+..|++.+. ..+.++..+++.+ +..++|.|+|..+.+++++++..+.+-.. |-...+.+.+.. ++.-+.
T Consensus 253 kVkkdP~kS~~~~~~~~~~~~~~~~~~~~~t~r~klvL~~f~~~~~~~i~Gv~~~gW~~~Eia~~Fl~~giv~G~i~~~~ 332 (506)
T PRK11588 253 RVKKNPLLSRVHESDRFFREKQADVEQRPFTFGDWLVLLVLTAVMVWVIWGVVVNAWFIPEIASQFFTMGLVIGLIGVVF 332 (506)
T ss_pred HhcCCCcccccccchhhhhhhhccccccCcChhhHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHhhhhh
Confidence 443222211 1111111111111 12479999999999999988887765422 222233332222 222223
Q ss_pred --CCcChHHHhhccCC-----hhHHHHHHHHHHHHHHH-----HHhCHHHHHHHHHHHhhccCCCchHHHHHHHHHHHHH
Q 008532 397 --GVLDWDDCLSEKSA-----WDTLAWFAVLVGMAGQL-----TNLGIVTWMSDSVAKCLQSFSLSWPAAFGVLQASYFL 464 (562)
Q Consensus 397 --gvl~~~~~~~~~i~-----w~~l~l~~~~~~l~~~l-----~~tGi~~~ia~~l~~~~~~~~~~~~~~~~~l~~~~~~ 464 (562)
+-++.+|..+.-++ -...+.++-+-.+...+ ++..+.|.+.+.+.+.+++.+ .......+.+...+
T Consensus 333 ~~~g~~~~~i~~~f~~Ga~~m~~~aliig~A~~i~~il~~g~~~~g~iidTIv~~~~~~L~~lp--~~~~ai~m~i~~~~ 410 (506)
T PRK11588 333 RLNGMTVNTMASSFTEGARMMLAPALLVGFAKGILLLLGGGEPGDPSVLNTILNSAGGAISGLP--DAVSAWFMLLFQSV 410 (506)
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhccCC--HHHHHHHHHHHHHH
Confidence 34578887543222 12333333344555667 444488888888888887654 23444455566667
Q ss_pred HHHHhchhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhhhhhccccchhhHHhhcCCCCCHHHHHHHhHHHHHHH
Q 008532 465 IHYLFASQTGHVGALYSAFLAMHLAAGVPGVLAALALAYNTNLFGAITHYSSGQAAVYYGAGYIDLPDVFKMGFTMALVN 544 (562)
Q Consensus 465 ~~~~f~S~~a~~~il~Pi~~~la~~~Gv~p~~~~l~l~~~~~~~~~~tP~~s~~n~i~~~~g~i~~~d~~k~g~~~~li~ 544 (562)
++.++.|.++.+++.+|++.|+++..|+++....++..++.+....++|.+ +..+...+..++++.+|+|+.+|+.++.
T Consensus 411 lNffIpSgSGqAaitmPIm~Plad~lGisrq~avlAfq~GDg~tNlI~Pts-~~lm~~Laia~Ipy~kW~Kf~~pl~~i~ 489 (506)
T PRK11588 411 FNFFVTSGSGQAALTMPLMAPLADLVGVNRQVAVLAFQLGDGFTNIIYPTS-ASLMATLGVCRVDFGNWLKFIWRFLLLL 489 (506)
T ss_pred HHeEecChHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhHHHHHhhhhH-HHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 788899999999999999999999999999999999999998788888874 3334445778899999999999999988
Q ss_pred HHHHHHHH
Q 008532 545 AIIWGVTG 552 (562)
Q Consensus 545 ~vi~~~v~ 552 (562)
.++..+..
T Consensus 490 ~v~~~v~l 497 (506)
T PRK11588 490 FIMSSVVV 497 (506)
T ss_pred HHHHHHHH
Confidence 87655543
|
|
| >COG2851 CitM H+/citrate symporter [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.3e-17 Score=165.73 Aligned_cols=390 Identities=15% Similarity=0.086 Sum_probs=262.3
Q ss_pred HHHhhcCCChHHHHHHHHHHHHHh---cCCChHHHHH-hc--cchHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhCCC
Q 008532 134 AGLVLSPLPVGAWAFLGLTTSIVT---RTLAFPTAFA-AF--TNEVIWLIVISFFFARGFVKTGLGDRIATYFVKWLGKS 207 (562)
Q Consensus 134 ~lw~~~~~p~~~~all~~~ll~l~---gv~~~~~~~~-~~--~~~~i~li~~~~~la~al~~tGl~~ria~~i~~~~g~~ 207 (562)
.+..++++.+.+.-.+.+....+. |+.+..|.+. +. --++..+++....+-..+.++|+.|.+.+++++..+++
T Consensus 15 ~Lim~kk~sp~iAli~vPiv~ALi~gfgv~~lg~m~~~Gi~~va~t~imlmFAILfFgIM~DsGLFdPli~~il~~~kgd 94 (433)
T COG2851 15 WLIMTKKLSPIIALILVPIVFALIAGFGVTGLGEMMLDGIKSVAPTAIMLMFAILFFGIMIDSGLFDPLIRKILSIVKGD 94 (433)
T ss_pred HHHHhcccchHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHhcCC
Confidence 334567777665555555544443 3333333332 22 23667777777778888999999999999999999999
Q ss_pred hhhHHHHHHHHHHHhhhcCCChhhhhhHhHHHHHHHHHHHcCCCCCCCCcchhhhHHHHHhHHhhhhhcccccccchhHH
Q 008532 208 TLGLSYGLTFSEALIAPAMPSTTARAGGVFLPIIKSLSLSAGSKPGDSSSKKLGSYLIQSQFQSAGNSSALFLTAAAQNL 287 (562)
Q Consensus 208 ~~~l~~~l~l~~~~ls~~~~s~~a~~~~i~~Pi~~~i~~~~g~~p~~~~~~~~~~~l~l~~~~~~~~~g~~t~~g~~~n~ 287 (562)
+..+..+..+++.+.|.=.+.++.. .+..|..+++.|++|.+|- .+......++++. ..+|.|.|+.-
T Consensus 95 p~kV~igTavla~~v~LDGdGatTf--lIti~A~LPlYkrLgmn~~---------~l~~l~~ls~gvm-N~~PWGGPt~R 162 (433)
T COG2851 95 PVKVVIGTAVLAAVVSLDGDGATTF--LITIPALLPLYKRLGMNPY---------LLALLATLSAGVM-NMLPWGGPTAR 162 (433)
T ss_pred ceeeeHHHHHHHHHhhccCCCceEE--EeeHHhHhHHHHHcCCcHH---------HHHHHHHHhhhhe-ecCCCCCcHHH
Confidence 9999999998888888776655533 6889999999999999862 2222233444444 47899998777
Q ss_pred HHHHHHHHcCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCh--hHHHHHH--h-hhcCCCCHHHHHHH
Q 008532 288 LCLKLAEELGVIISSPWVSWFKAACVPALVALLATPLILYKLYPPEVKDTPDA--PAMAAKK--L-KQLGPVTRNEWIMV 362 (562)
Q Consensus 288 i~~g~~~~~G~~i~~~~~~w~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~--~-~~~g~~t~~e~~~l 362 (562)
.+..+ |.+ -.|.|....|.-++.+++...+.+++-|+|+++.... ++..++. . ++..+-.+|+|...
T Consensus 163 aas~L----g~d----~~el~~pliP~~i~Gl~~vl~lA~~lG~kErkRlg~~~~~~~~~~~~~~~~~~~~~~~rpkl~W 234 (433)
T COG2851 163 AASVL----GVD----PAELFVPLIPIQIIGLVLVLALAWLLGKKERKRLGVIDLSEELEQLVELSEEDQEELKRPKLFW 234 (433)
T ss_pred HHHHh----CCC----HHHHHhhhhHHHHHHHHHHHHHHHHhhHHHHHHhhhccCchhhhhccccCCchhhhhhccHHHH
Confidence 66554 654 4588888888888777777777776666665442211 1100110 0 00001123334333
Q ss_pred HH--HHHHHHHHHhcCCCCCChHHHHHHHHHHHHHhCCcChHHHhhccCC------hhHHHHHHHHHHHHHHHHHhCHHH
Q 008532 363 GT--MLLAVSLWIFGDALGIPSVVAAMIGLSILLLLGVLDWDDCLSEKSA------WDTLAWFAVLVGMAGQLTNLGIVT 434 (562)
Q Consensus 363 ~i--~~~~i~l~i~~~~~gi~~~~vall~~~ll~~~gvl~~~~~~~~~i~------w~~l~l~~~~~~l~~~l~~tGi~~ 434 (562)
.= +.+.+..++..+. +++....+++..+.+..+--+.||- +|++. -.+..++.++-.+.+.++.||..|
T Consensus 235 ~N~lLtl~lm~~Lv~gi--~p~~~lFmig~~iAL~vNYP~vk~Q-~~ri~aha~nal~vvs~i~AAGif~Gil~gtgMvd 311 (433)
T COG2851 235 FNLLLTLALMGLLVSGI--FPPGVLFMIGFAIALPVNYPNVKEQ-MERIGAHAGNALMVVSLIFAAGIFLGILSGTGMVD 311 (433)
T ss_pred HHHHHHHHHHHHHHhcc--cchhHHHHHHHHHHHHhCCCCHHHH-HHHHHHhCcchhHHHHHHHHHHHHhhhhCCCchHH
Confidence 32 2223333444333 7888999999999999887777773 44443 223444445555667999999999
Q ss_pred HHHHHHHHhhccCCCchHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhhhhhccc
Q 008532 435 WMSDSVAKCLQSFSLSWPAAFGVLQASYFLIHYLFASQTGHVGALYSAFLAMHLAAGVPGVLAALALAYNTNLFGAITHY 514 (562)
Q Consensus 435 ~ia~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~f~S~~a~~~il~Pi~~~la~~~Gv~p~~~~l~l~~~~~~~~~~tP~ 514 (562)
.++..+.+...+. ..+ .+-++.....+-.++|+||++...-.+|++.+.+.+.|++|+-.+.+..++-. ..+++|.
T Consensus 312 ama~si~~vIP~~-lgp--yl~~ivgl~svP~tf~~snDAyYfGvlPIv~e~as~yGv~pv~~A~AsiiGq~-vh~lSPl 387 (433)
T COG2851 312 AMAKSIVSVIPDA-LGP--YLPLIVGLLSVPFTFFMSNDAYYFGVLPIVAEAASAYGVEPVEIARASIIGQP-VHFLSPL 387 (433)
T ss_pred HHHHHHHHhCcHh-hcc--hHHHHHHHHcCCeEEEecCcchhhhhHHHHHHHHHHcCCCHHHHHHHHHhCCc-ceeeccc
Confidence 9999999987653 222 22233333334466799999999999999999999999999998887777654 4666776
Q ss_pred cchhhHHhhcCCCCCHHHHHHHhHHHHHHHHHHHHHH
Q 008532 515 SSGQAAVYYGAGYIDLPDVFKMGFTMALVNAIIWGVT 551 (562)
Q Consensus 515 ~s~~n~i~~~~g~i~~~d~~k~g~~~~li~~vi~~~v 551 (562)
.|......|..+++++|+.|+.+-......++....
T Consensus 388 -vPat~LlvgLa~v~~gdh~k~a~~wa~~~siv~l~~ 423 (433)
T COG2851 388 -VPATYLLVGLAKVDMGDHQKFALKWAWGISIVMLAI 423 (433)
T ss_pred -hHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHH
Confidence 455556678889999999999888877666555444
|
|
| >cd01118 ArsB_permease Anion permease ArsB | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.4e-18 Score=180.76 Aligned_cols=192 Identities=18% Similarity=0.202 Sum_probs=161.7
Q ss_pred HHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHhCCcChHHHhhcc-CChhHHHHHHHHHHHHHHHHHhCHHHHHHHH
Q 008532 361 MVGTMLLAVSLWIFGDALGIPSVVAAMIGLSILLLLGVLDWDDCLSEK-SAWDTLAWFAVLVGMAGQLTNLGIVTWMSDS 439 (562)
Q Consensus 361 ~l~i~~~~i~l~i~~~~~gi~~~~vall~~~ll~~~gvl~~~~~~~~~-i~w~~l~l~~~~~~l~~~l~~tGi~~~ia~~ 439 (562)
++.++++++++|+++. .++|...+++++..++.+.|++++||++++. ++|++++++++++.++.+++++|+.+|+++.
T Consensus 2 ~l~i~~~~i~l~~~~~-~~i~~~~~al~~~~ll~~~gv~~~~~~~~~~~~~~~~i~~~~g~~~i~~~l~~tGl~~~ia~~ 80 (416)
T cd01118 2 AIAIFVLTLVLVIWRP-FGLPEAVWAVLGAVIALILGLVSPHDALEVWGIVWDVTLTLIGVILLSLLLDEEGFFEWVAAL 80 (416)
T ss_pred HHHHHHHHHHHHHHcc-CCCChHHHHHHHHHHHHHHCCCCHHHHHHHHhcchhHHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence 4677888899999875 4588999999999999999999999987533 6899999999999999999999999999999
Q ss_pred HHHhhccCCCchHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHcCCCH---HHHHHHHHHHHhhhhhhccccc
Q 008532 440 VAKCLQSFSLSWPAAFGVLQASYFLIHYLFASQTGHVGALYSAFLAMHLAAGVPG---VLAALALAYNTNLFGAITHYSS 516 (562)
Q Consensus 440 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~f~S~~a~~~il~Pi~~~la~~~Gv~p---~~~~l~l~~~~~~~~~~tP~~s 516 (562)
+.+..++.+ +...+.+..+..+++ .|.||++++.++.|++..++++.|.|| ....+..+++++.++.++|+++
T Consensus 81 l~~~~~~~~--~~l~~~~~~~~~~ls--~~~sn~a~~~~~~Pi~~~i~~~~g~~~~~~~~~l~~~~~~a~~g~~~tpig~ 156 (416)
T cd01118 81 AARWARGSG--RKLFTLIVLLGAAVT--AFFANDGTALILTPIVIALLRALGAKKNRTLPFLYACAFIADAASLPLPISN 156 (416)
T ss_pred HHHHhCCCh--HHHHHHHHHHHHHHH--HHHhhHHHHHHHHHHHHHHHHHcCCCcccccHHHHHHHHHHcccccccccCC
Confidence 998766432 233333333333333 578999999999999999999999999 7777888888887899999999
Q ss_pred hhhHHhhcCCCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 008532 517 GQAAVYYGAGYIDLPDVFKMGFTMALVNAIIWGVTGTFWWK 557 (562)
Q Consensus 517 ~~n~i~~~~g~i~~~d~~k~g~~~~li~~vi~~~v~~~~w~ 557 (562)
++|.+.++.+++++.||+|.++|.+++..++...+.+.+++
T Consensus 157 ~~n~i~~~~~~i~~~~~~~~~~p~~li~~~~~~~~~~~~~~ 197 (416)
T cd01118 157 LVNIVTAGYFGIGFTEYAALMFLPSIVSILATYVVLYLFFR 197 (416)
T ss_pred chHHHhHhccCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 99999999899999999999999999998887777665543
|
These permeases have been shown to export arsenate and antimonite in eubacteria and archaea. A typical ArsB permease contains 8-13 transmembrane helices and can function either independently as a chemiosmotic transporter or as a channel-forming subunit of an ATP-driven anion pump (ArsAB). The ArsAB complex is similar in many ways to ATP-binding cassette transporters, which have two groups of six transmembrane-spanning helical segments and two nucleotide-binding domains. The ArsB proteins belong to the ArsB/NhaD superfamily of permeases that translocate sodium, arsenate, sulfate, and organic anions across biological membranes in all three kingdoms of life. |
| >cd01115 SLC13_permease Permease SLC13 (solute carrier 13) | Back alignment and domain information |
|---|
Probab=99.79 E-value=7e-19 Score=186.09 Aligned_cols=261 Identities=16% Similarity=0.206 Sum_probs=200.1
Q ss_pred CccCCCCCCCCCCCCCCccccccccccccCcCCCCCccccccccCCCCCCCCCCCCCCCcccchhHHHHHH----HHHHH
Q 008532 32 PISKSPPSIFPSHSRSFPTLRSRSLSLSRPHIIRPIHSSSQNDTASTVPPTNLPSPPPPRGAKLLPFVISI----SIGLI 107 (562)
Q Consensus 32 p~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~i~~----~~~l~ 107 (562)
|+..++.+.+|.+| +.++......+...+.+.+.+..+|....+..++..+.+.++..|.... ++.++
T Consensus 112 Pi~~~~~~~~g~~~--------~~~~l~~~~~~~~g~~~~p~g~~~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 183 (382)
T cd01115 112 PVALGLAAKLDISP--------SRLLMPLAFAASIGGMLTLIGTPPNLVASGYLESLGGQGFSFFEFTPIGLPLLIIGLL 183 (382)
T ss_pred HHHHHHHHHcCCCh--------hHHHHHHHHHHHhcccceecCCchHHHHHHHHHHccCCCcCHHHHHHHHHHHHHHHHH
Confidence 56666666666655 3556555556666777778888888877554433333344555554321 12222
Q ss_pred HHHhcCCCCCCCHHHHHHHHHHHHHHHHHhh-----cCCChHHHHHHHHHHHHHhcCCChHHHHHhccchHHHHHHHHHH
Q 008532 108 LRFLVPKPVEVSPQAWQLLSIFLSTIAGLVL-----SPLPVGAWAFLGLTTSIVTRTLAFPTAFAAFTNEVIWLIVISFF 182 (562)
Q Consensus 108 ~~~~~p~p~~ls~~~~~~l~i~~~~i~lw~~-----~~~p~~~~all~~~ll~l~gv~~~~~~~~~~~~~~i~li~~~~~ 182 (562)
.+++. +...+++..+++|.+ +..|...+++++..++.+.|..++||+++++.|++++++.+++.
T Consensus 184 ~~~~~-----------~~~~~~~~~i~l~~~~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~w~~l~~~~~~~~ 252 (382)
T cd01115 184 YLWFI-----------FRLAVLIITIVLLAALAAITGLLPVSVAIAIGAIVLVFGGVLLTKEDYKSIDWGIIFLFAGGIP 252 (382)
T ss_pred HHHHH-----------HHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHccCCHHHHHHcCCchHHHHHHHHHH
Confidence 21222 234556666666764 45788999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCHHHHHHHHHHHHhCC-ChhhHHHHHHHHHHHhhhcCCChhhhhhHhHHHHHHHHHHHcCCCCCCCCcchhh
Q 008532 183 FARGFVKTGLGDRIATYFVKWLGK-STLGLSYGLTFSEALIAPAMPSTTARAGGVFLPIIKSLSLSAGSKPGDSSSKKLG 261 (562)
Q Consensus 183 la~al~~tGl~~ria~~i~~~~g~-~~~~l~~~l~l~~~~ls~~~~s~~a~~~~i~~Pi~~~i~~~~g~~p~~~~~~~~~ 261 (562)
++.+++|+|+.||+++.+.++.++ ++......+++.+.+++.+++|++. + .++.|++.+++++.|.||.
T Consensus 253 l~~~l~~~Gl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~ls~~~sn~~~-~-~i~~Pi~~~~~~~~g~~p~-------- 322 (382)
T cd01115 253 LGKALESSGAAALIAEALISLLGGLPPFAILLLLCLLTLVLTNFISNTAT-A-VLLAPIALSIALSLGLPPE-------- 322 (382)
T ss_pred HHHHHHHcCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHhhHHHH-H-HHHHHHHHHHHHHcCCChH--------
Confidence 999999999999999999987766 7788888999999999999977654 4 6999999999999999873
Q ss_pred hHHHHHhHHhhhhhcccccccchhHHHHHHHHHHcCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 008532 262 SYLIQSQFQSAGNSSALFLTAAAQNLLCLKLAEELGVIISSPWVSWFKAACVPALVALLATPLILYKLY 330 (562)
Q Consensus 262 ~~l~l~~~~~~~~~g~~t~~g~~~n~i~~g~~~~~G~~i~~~~~~w~~~~~~~~li~~~~~~~~~~~~~ 330 (562)
.+.+...++++. +..+|+|+++|.+..+. + +++ +.||+++++|+.++..++...+.+.+|
T Consensus 323 -~~~~~~~~~~~~-~~~tp~~~~~n~i~~~~----~-~i~--~~~~~~~~~p~~i~~~~~~~~~~~~~~ 382 (382)
T cd01115 323 -ALLLAVAIGASC-AFMLPVGTPPNAIVLGP----G-GYK--FSDFAKVGLPLSILSLVVSVTMIPLIW 382 (382)
T ss_pred -HHHHHHHHHHHH-HHcCccCCCCCeeeeCC----C-Ccc--HHHHHHhCHHHHHHHHHHHHHHHHHHC
Confidence 466777777775 68899999999998764 3 478 999999999999999988888887764
|
The sodium/dicarboxylate cotransporter NaDC-1 has been shown to translocate Krebs cycle intermediates such as succinate, citrate, and alpha-ketoglutarate across plasma membranes rabbit, human, and rat kidney. It is related to renal and intestinal Na+/sulfate cotransporters and a few putative bacterial permeases. The SLC13-type proteins belong to the ArsB/NhaD superfamily of permeases that translocate sodium and various anions across biological membranes in all three kingdoms of life. A typical ArsB/NhaD permease is composed of 8-13 transmembrane helices. |
| >TIGR00935 2a45 arsenical pump membrane protein | Back alignment and domain information |
|---|
Probab=99.78 E-value=1e-17 Score=179.84 Aligned_cols=269 Identities=15% Similarity=0.193 Sum_probs=190.5
Q ss_pred CCccCCCCCCCCCCCCCCccccccccccccCcCCCCCccccccccCCCCCCCCCCCCCCCcccchhHHHHHH--------
Q 008532 31 KPISKSPPSIFPSHSRSFPTLRSRSLSLSRPHIIRPIHSSSQNDTASTVPPTNLPSPPPPRGAKLLPFVISI-------- 102 (562)
Q Consensus 31 ~p~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~i~~-------- 102 (562)
-|+..++.+.++.+|++ ++....+ .....+...+++..||......... .+.++..|....
T Consensus 119 ~Pi~~~l~~~~~~~~~~-------~~~~~~~-~a~~gg~~t~iG~~~n~i~~~~~~~---~~i~f~~f~~~~~p~~l~~l 187 (429)
T TIGR00935 119 TPIVIAMCEVLGFNPRT-------ILAFVVA-AGFIADTASLPLIVSNLVNIVSADY---FGLGFAEYTSHMLPGNILVL 187 (429)
T ss_pred HHHHHHHHHHhCCCCcc-------hHHHHHH-HHHHhhHHhcCCCCchhhhhhcccc---cCCCHHHHHHHHhHHHHHHH
Confidence 48888888888888752 2322333 3334555567888999987554322 345666554331
Q ss_pred HHH-HHHHHhcCCCC---------------CCCHHH--HHHHHHHHHHHHHHhhcC---CChHHHHHHHHHH----HHHh
Q 008532 103 SIG-LILRFLVPKPV---------------EVSPQA--WQLLSIFLSTIAGLVLSP---LPVGAWAFLGLTT----SIVT 157 (562)
Q Consensus 103 ~~~-l~~~~~~p~p~---------------~ls~~~--~~~l~i~~~~i~lw~~~~---~p~~~~all~~~l----l~l~ 157 (562)
.+. +..+++.+ || ..+.++ +..+.+++.++++|.++. ++....+..+..+ +...
T Consensus 188 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~~~~~~~~~a~~~~~~~~~l~~~~ 266 (429)
T TIGR00935 188 VATLLVLRLYFR-NDIPKVYDLELLLAPKYAIKDPALFKKCWIVLVFLLVGFFVLEFLGIPVSAIAWIAALGAIALAILA 266 (429)
T ss_pred HHHHHHHHHHHH-ccCCcccchhhccCccccccCHHHHHHHHHHHHHHHHHHHHhccccCchHHHHHHHHHHHHHHHHhc
Confidence 111 12233343 21 112222 456778888888998764 3444444433322 2246
Q ss_pred cCCChHHHHHhccchHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhhhcCCChhhhhhHhH
Q 008532 158 RTLAFPTAFAAFTNEVIWLIVISFFFARGFVKTGLGDRIATYFVKWLGKSTLGLSYGLTFSEALIAPAMPSTTARAGGVF 237 (562)
Q Consensus 158 gv~~~~~~~~~~~~~~i~li~~~~~la~al~~tGl~~ria~~i~~~~g~~~~~l~~~l~l~~~~ls~~~~s~~a~~~~i~ 237 (562)
|..++||+.++++|++++++.+++.++.+++++|+.+++++......+.++......+...+.+++.+++|.+ ++
T Consensus 267 ~~~~~~~~~~~i~w~~l~~~~g~f~l~~~l~~tG~~~~la~~~~~~~~~~~~~~~~~~~~~~~~ls~~~sN~~-----~~ 341 (429)
T TIGR00935 267 DAIDTEKVLRGAPWQIVLFSAGMYLVVEGLKNLGLTEYLGGILNVLEDRGLWAAILGTGFVSAFLSSIMNNMP-----TM 341 (429)
T ss_pred CCCCHHHHHHhCCcHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHccHH-----HH
Confidence 8999999999999999999999999999999999999999955443445666777788888999999996654 46
Q ss_pred HHHHHHHHHHc--CCCCCCCCcchhhhHHHHHhHHhhhhhcccccccchhHHHHHHHHHHcCCcccccHHHHHHHHHHHH
Q 008532 238 LPIIKSLSLSA--GSKPGDSSSKKLGSYLIQSQFQSAGNSSALFLTAAAQNLLCLKLAEELGVIISSPWVSWFKAACVPA 315 (562)
Q Consensus 238 ~Pi~~~i~~~~--g~~p~~~~~~~~~~~l~l~~~~~~~~~g~~t~~g~~~n~i~~g~~~~~G~~i~~~~~~w~~~~~~~~ 315 (562)
.|++.+++++. |.+| ..+.+...++++.|+..||+|+++|++.++.+++.||+++ +.||+++|.|.+
T Consensus 342 ~pi~~~i~~~~~~g~~~---------~~~~~~l~~~~~~gg~~tp~gs~anli~~~~~~~~g~~~~--~~df~k~g~~~~ 410 (429)
T TIGR00935 342 LVGALSIDQSSATGLPK---------EPMVYANVIGADLGPKITPIGSLATLLWLHVLEQKGYKIS--WGYYFRTGIPMT 410 (429)
T ss_pred HHHHHHHhhccccccch---------hHHHHHHHHHHhcCcccCccccHHHHHHHHHHHHCCcccc--HHHHHHHHHHHH
Confidence 89999988753 4444 2466778889999999999999999999998888888888 999999999999
Q ss_pred HHHHHHHHHHHH
Q 008532 316 LVALLATPLILY 327 (562)
Q Consensus 316 li~~~~~~~~~~ 327 (562)
++.+++...+.+
T Consensus 411 ~~~~~i~~~~l~ 422 (429)
T TIGR00935 411 IPVLFVTLAYLL 422 (429)
T ss_pred HHHHHHHHHHHH
Confidence 888777766554
|
|
| >PF03606 DcuC: C4-dicarboxylate anaerobic carrier; InterPro: IPR018385 Escherichia coli contains four different secondary carriers (DcuA, DcuB, DcuC, and DctA) for C4-dicarboxylates [, , , ] DcuA is used for aerobic growth on C4-dicarboxylates [, ], whereas the Dcu carriers (encoded by the dcuA, dcuB, and dcuC genes) are used under anaerobic conditions and form a distinct family of carriers [, , , , , ] | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.9e-16 Score=168.13 Aligned_cols=360 Identities=17% Similarity=0.118 Sum_probs=218.6
Q ss_pred cchHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhCCChhhHHHHHHH--HHHHhhhcCCChhhhhhHhHHHHHHHHHHH
Q 008532 170 TNEVIWLIVISFFFARGFVKTGLGDRIATYFVKWLGKSTLGLSYGLTF--SEALIAPAMPSTTARAGGVFLPIIKSLSLS 247 (562)
Q Consensus 170 ~~~~i~li~~~~~la~al~~tGl~~ria~~i~~~~g~~~~~l~~~l~l--~~~~ls~~~~s~~a~~~~i~~Pi~~~i~~~ 247 (562)
..+..++++...-+.+.++++|..|...+.+.|+.+++...++...+. .....+..+++.+ ..++|+..+++.+
T Consensus 77 ~a~ii~~I~~igG~~~vm~~tGA~~~~v~~l~k~l~~~~~~~I~i~~~~f~~~~~~~g~~~~~----i~~~~il~pi~~a 152 (465)
T PF03606_consen 77 AAGIIFFIMIIGGFFGVMNHTGAIDALVNLLIKPLKGKKNPLIPILMFFFSGGGLTIGIPEEA----IAFMPILIPILIA 152 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhhHHHH----HHHHHHHHHHHHH
Confidence 345667777777778999999999999999999998865555444443 3333344444443 5889999999999
Q ss_pred cCCCCCCCCcchhhhHHHHHhHHhhhhhcccccccchhHHHHHHHHHH-cCCcccccHHHHHHHHHHHHHHHHHHHHHHH
Q 008532 248 AGSKPGDSSSKKLGSYLIQSQFQSAGNSSALFLTAAAQNLLCLKLAEE-LGVIISSPWVSWFKAACVPALVALLATPLIL 326 (562)
Q Consensus 248 ~g~~p~~~~~~~~~~~l~l~~~~~~~~~g~~t~~g~~~n~i~~g~~~~-~G~~i~~~~~~w~~~~~~~~li~~~~~~~~~ 326 (562)
+|+|+. ...++...+...+...+.. |+...+.+++ .|.+ ..+++.....+..+..++...+.
T Consensus 153 lG~d~~----------~a~a~v~~~~~~g~~~~~~---npf~~~iAq~iaglp----~~sg~~~r~i~~~i~~~i~~~~~ 215 (465)
T PF03606_consen 153 LGYDPI----------TAAAAVILGAGAGFAGPPS---NPFTVGIAQKIAGLP----LFSGFWFRQIPFVIFTLIAIAYV 215 (465)
T ss_pred cCCCHH----------HHHHHHHHHHHHhhcCCcc---ChHHHHHHHHhcCCC----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 999853 1122222222233334444 4444444444 5654 34544333333223222222222
Q ss_pred ----HHhcCCCCCCCCCh-hHHHHHHh-hhcCCCCHHHHHHHHHHHHHHHHHHhc---CCC--CCChHHHHHHHHH---H
Q 008532 327 ----YKLYPPEVKDTPDA-PAMAAKKL-KQLGPVTRNEWIMVGTMLLAVSLWIFG---DAL--GIPSVVAAMIGLS---I 392 (562)
Q Consensus 327 ----~~~~~~~~~~~~~~-~~~~~~~~-~~~g~~t~~e~~~l~i~~~~i~l~i~~---~~~--gi~~~~vall~~~---l 392 (562)
.++.|++.++..++ ++..+++. ++..++++++|..+.++++.+++.+.+ ... +.+....+.+... +
T Consensus 216 ~~ya~kv~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~li~g~~~~~~~~~~~~~~~~~~fl~~~ii 295 (465)
T PF03606_consen 216 HRYAQKVKKDPSYSEVYEDDEAEEEEEEEQEEKLTKRPKLYLLLPVLPFVLLIYGFSFVIIKIKWYFPEIAALFLIIGII 295 (465)
T ss_pred HHHHHHHHhcccchhhhhhHHhhhhcccccccccccccceeehHHHHHHHHHHhchhhhhccccccHHHHHHHHHHHHHH
Confidence 22222221111111 11111111 112236788888888888888777765 111 2333333333332 2
Q ss_pred HHHhC---CcChHHHhhccCCh--h---HHHHHHHHHHHHHHHHHhCHHHHHHHHHHHhhccCCCchHHHHHHHHHHHHH
Q 008532 393 LLLLG---VLDWDDCLSEKSAW--D---TLAWFAVLVGMAGQLTNLGIVTWMSDSVAKCLQSFSLSWPAAFGVLQASYFL 464 (562)
Q Consensus 393 l~~~g---vl~~~~~~~~~i~w--~---~l~l~~~~~~l~~~l~~tGi~~~ia~~l~~~~~~~~~~~~~~~~~l~~~~~~ 464 (562)
.-+.+ ..+.+|..++-++- + .-+.++-+.+..-.+++.++.+.+.+.+....++.+ .......+.+...+
T Consensus 296 ~~~i~~~~~~~~~~~~~~F~~G~~~~~~~a~vVgla~ai~v~~~~~~i~~tI~~~~~~~l~~~~--~~~~~~~m~~~~~~ 373 (465)
T PF03606_consen 296 IGLIRHRSGKSPNEIVKAFFKGMGDMLSFALVVGLARAISVFMEGGKIIDTIVHLLSNLLSGLP--GVIAAIGMFLIQFL 373 (465)
T ss_pred HHHHHhhccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHH
Confidence 33334 55666654432221 1 122222234444446677788888888887776543 22233334445556
Q ss_pred HHHHhchhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhhhhhccccchhhHHhhcCCCCCHHHHHHHhHHHHHHH
Q 008532 465 IHYLFASQTGHVGALYSAFLAMHLAAGVPGVLAALALAYNTNLFGAITHYSSGQAAVYYGAGYIDLPDVFKMGFTMALVN 544 (562)
Q Consensus 465 ~~~~f~S~~a~~~il~Pi~~~la~~~Gv~p~~~~l~l~~~~~~~~~~tP~~s~~n~i~~~~g~i~~~d~~k~g~~~~li~ 544 (562)
......|+++.+.+++|++.|+++..|+++....++..++++++..++|.+ +..+...+..++++.||+|..+|..++.
T Consensus 374 ~~fli~SGsg~a~~~mpim~plad~~Gi~~q~~vla~q~g~gl~n~isPts-g~~m~~l~ia~V~~~~w~K~~~~~~~~~ 452 (465)
T PF03606_consen 374 INFLIGSGSGQAAAFMPIMPPLADLLGITRQTAVLAFQFGDGLGNSISPTS-GVLMAVLGIAKVSYGKWVKRTWPPMLIW 452 (465)
T ss_pred HeeecCCchHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHhhccchH-HHHHHHhhhcCCCHHHHHHHHHHHHHHH
Confidence 666789999999999999999999999999999999999999888888874 3444556788999999999999999998
Q ss_pred HHHHHHHHH
Q 008532 545 AIIWGVTGT 553 (562)
Q Consensus 545 ~vi~~~v~~ 553 (562)
.++..++.+
T Consensus 453 ~v~~~v~l~ 461 (465)
T PF03606_consen 453 FVLSIVFLI 461 (465)
T ss_pred HHHHHHHHH
Confidence 888766543
|
Each of the Dcu carriers is able to catalyze the uptake, antiport, and possibly also efflux of C4-dicarboxylates. DcuB is the major C4-dicarboxylate carrier for fumarate respiration with high fumarate-succinate exchange activity. It is synthesized only in the absence of oxygen and nitrate and in the presence of C4-dicarboxylates [, , , ]. DcuA is expressed constitutively in aerobic and anaerobic growth and can substitute for DcuB [, ]. These proteins are members of the C4-dicarboxylate Uptake C (DcuC) family. DcuC has 12 GES predicted transmembrane regions, is induced only under anaerobic conditions, and is not repressed by glucose. DcuC may therefore function as a succinate efflux system during anaerobic glucose fermentation. However, when overexpressed, it can replace either DcuA or DcuB in catalyzing fumarate-succinate exchange and fumarate uptake [, ]. DcuC shows the same transport modes as DcuA and DcuB (exchange, uptake, and presumably efflux of C4-dicarboxylates) [].; GO: 0016021 integral to membrane |
| >cd01116 P_permease Permease P (pink-eyed dilution) | Back alignment and domain information |
|---|
Probab=99.77 E-value=6.1e-17 Score=173.12 Aligned_cols=189 Identities=20% Similarity=0.235 Sum_probs=164.4
Q ss_pred HHHHHHHHHHHHHHhhcCC---ChHHHHHHHHHHHHHhcCC-ChHHHHHhccchHHHHHHHHHHHHHHHHHhCHHHHHHH
Q 008532 123 WQLLSIFLSTIAGLVLSPL---PVGAWAFLGLTTSIVTRTL-AFPTAFAAFTNEVIWLIVISFFFARGFVKTGLGDRIAT 198 (562)
Q Consensus 123 ~~~l~i~~~~i~lw~~~~~---p~~~~all~~~ll~l~gv~-~~~~~~~~~~~~~i~li~~~~~la~al~~tGl~~ria~ 198 (562)
+..+.++..++..|.++.. +.+.+++++..++...+.. ++||+++++.|++++++.+++.++.+++++|+.||+++
T Consensus 218 ~~~~~i~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~w~~l~~~~g~~~l~~~l~~tG~~~~la~ 297 (413)
T cd01116 218 LKSLTILTLVIIGFVLHSPLGVSLGWIALLGALLLLLLADKLDFEDVLSRVEWDTLLFFAGLFVLVGGLEELGIIEWIAE 297 (413)
T ss_pred HHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHcCCCCHHHHHHhCCCcHHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence 3456778888888988764 5788999999888888886 99999999999999999999999999999999999999
Q ss_pred HHHHHhCCChhhHHHHHHHHHHHhhhcCCChhhhhhHhHHHHHHHHHHHcCCCCCCCCcchhhhHHHHHhHHhhhhhccc
Q 008532 199 YFVKWLGKSTLGLSYGLTFSEALIAPAMPSTTARAGGVFLPIIKSLSLSAGSKPGDSSSKKLGSYLIQSQFQSAGNSSAL 278 (562)
Q Consensus 199 ~i~~~~g~~~~~l~~~l~l~~~~ls~~~~s~~a~~~~i~~Pi~~~i~~~~g~~p~~~~~~~~~~~l~l~~~~~~~~~g~~ 278 (562)
++.+..++++......+++++.+++.+++|+++. .++.|++.+++++.|.+| ..+.+.+.++++.|+..
T Consensus 298 ~l~~~~~~~~~~~~~~~~~~~~~~s~f~sn~~~~--~~~~pi~~~~~~~~~~~~---------~~~~~~~~~~a~~g~~~ 366 (413)
T cd01116 298 LLVGVILGRIAVAVILILWISALLSAFIDNIPVT--ATMIPIVKDLASQLGIPL---------LPLWWALALGACLGGNG 366 (413)
T ss_pred HHHHHhCCChHHHHHHHHHHHHHHHHHHccHHHH--HHHHHHHHHHHHhcCCCc---------hHHHHHHHHHHhccccc
Confidence 9999998877777778888999999999888754 699999999999998876 35777888999999999
Q ss_pred ccccchhHHHHHHHHHHcCCcccccHHHHHHHHHHHHHHHHHHHHH
Q 008532 279 FLTAAAQNLLCLKLAEELGVIISSPWVSWFKAACVPALVALLATPL 324 (562)
Q Consensus 279 t~~g~~~n~i~~g~~~~~G~~i~~~~~~w~~~~~~~~li~~~~~~~ 324 (562)
+|+|+++|++..+..++.|++++ +.||++++.|+.++..+....
T Consensus 367 tp~gs~~n~i~~~~~~~~g~~~~--~~~~~~~g~~~~i~~~~~~~~ 410 (413)
T cd01116 367 TLIGASANVVAAGIAEQHGYKIS--FWEFLKVGFPIMLVSLILATV 410 (413)
T ss_pred ccccchHHHHHHHHHHHcCCCcc--HHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988766666788 999999999999887655544
|
Mutations in the human melanosomal P gene were responsible for classic phenotype of oculocutaneous albinism type 2 (OCA2). Although the precise function of the P protein is unknown, it was predicted to regulate the intraorganelle pH, together with the ATP-driven proton pump. It shows significant sequence similarity to the Na+/H+ antiporter NhaD from Vibrio parahaemolyticus. Both proteins belong to ArsB/NhaD superfamily of permeases that translocate sodium, arsenate, sulfate, and organic anions across biological membranes in all three kingdoms of life. A typical ArsB/NhaD permease contains 8-13 transmembrane domains. |
| >TIGR00819 ydaH p-Aminobenzoyl-glutamate transporter family | Back alignment and domain information |
|---|
Probab=99.76 E-value=6.1e-15 Score=156.79 Aligned_cols=360 Identities=16% Similarity=0.109 Sum_probs=222.9
Q ss_pred HHHHHHhCHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhhhcCCChhhhhhHhHHHHHHHHHHHcCCCCCCCCcchhhhH
Q 008532 184 ARGFVKTGLGDRIATYFVKWLGKSTLGLSYGLTFSEALIAPAMPSTTARAGGVFLPIIKSLSLSAGSKPGDSSSKKLGSY 263 (562)
Q Consensus 184 a~al~~tGl~~ria~~i~~~~g~~~~~l~~~l~l~~~~ls~~~~s~~a~~~~i~~Pi~~~i~~~~g~~p~~~~~~~~~~~ 263 (562)
....||||+.+..-++.+++.+++.......++ .+++-. .++.+. ..+.|+...+.+++|++|-
T Consensus 97 vGvae~tG~i~a~i~~~v~~~p~~~~t~ivv~~---gv~s~~-asdaG~--vvl~PL~a~if~a~Gr~Pl---------- 160 (513)
T TIGR00819 97 AGIAEKSGLIPALMRKLASHSNAKLASFMVLFI---AFFSHI-ASDAAL--VILIPLGALIFHALGRHPL---------- 160 (513)
T ss_pred HHHHHHhcHHHHHHHHHHHhCCCchhHHHHHHH---HHHHHH-hhhhhH--HHHHHHHHHHHHHcCCChH----------
Confidence 466799999999999999887665433333332 233322 245554 5899999999999999873
Q ss_pred HHHHhHHhhhh-hcccccccchhHHHHHHHHHH-cC-----CcccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 008532 264 LIQSQFQSAGN-SSALFLTAAAQNLLCLKLAEE-LG-----VIISSPWVSWFKAACVPALVALLATPLILYKLYPPEVKD 336 (562)
Q Consensus 264 l~l~~~~~~~~-~g~~t~~g~~~n~i~~g~~~~-~G-----~~i~~~~~~w~~~~~~~~li~~~~~~~~~~~~~~~~~~~ 336 (562)
.-++..+++.. |-...+.-++.|++..|..++ ++ ++++ +...|+.. ..-.++...+.+++..|+.-|+...
T Consensus 161 aGia~~fagvs~GFsAnl~~~~~Dpll~Git~~aA~~~~~~~~v~-~~~n~~F~-~~s~~vl~~v~~~vt~Kv~ePrl~~ 238 (513)
T TIGR00819 161 AGLAAAFAGVGCGFSANLFIGTIDPLLAGISQEAAAAFHPDMHVG-PEANWFFM-AASTFVIAIIGGFITDKIIEPQLGP 238 (513)
T ss_pred HHHHHHHHHHhhhhhcccccccccHHHHHHHHHHHHhcCCCcccC-ccccHHHH-HHHHHHHHHHHHHHHhhhcCCCCCC
Confidence 22222333322 333334446788988888777 33 3343 23344332 2334444455555666655444332
Q ss_pred CCChhHHHHHHhhhcCCCCHHHHHHHHH-------HHHHHHHHHhcC--CCCC--------C---hHHHHHHHHHHHH--
Q 008532 337 TPDAPAMAAKKLKQLGPVTRNEWIMVGT-------MLLAVSLWIFGD--ALGI--------P---SVVAAMIGLSILL-- 394 (562)
Q Consensus 337 ~~~~~~~~~~~~~~~g~~t~~e~~~l~i-------~~~~i~l~i~~~--~~gi--------~---~~~vall~~~ll~-- 394 (562)
.+++.|..+++.++..++|++||+.+-. ++..+++.+..+ .+.- + .+.+..+....+.
T Consensus 239 ~~~~~~~~~~~~~~~~~~t~~EkkgLr~Ag~~~l~fia~l~ll~~P~~g~LR~~~tG~l~~SPf~~~iipii~~~Fli~g 318 (513)
T TIGR00819 239 WQGDLNQDEKDIRHLNEITELERFGLIIAGVVFIAFIAAIALMIIPADGILRDPENGLVAGSPFIKGIVPFIFLFFALPG 318 (513)
T ss_pred CCcccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCCCCccCChHHHhHHHHHHHHHHHHH
Confidence 1111111111123455689999987654 444444444411 1111 1 1233333332222
Q ss_pred -Hh----C-CcChHHHhhccCC-----hhHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHhhccCCCchHHHHHHHHHHHH
Q 008532 395 -LL----G-VLDWDDCLSEKSA-----WDTLAWFAVLVGMAGQLTNLGIVTWMSDSVAKCLQSFSLSWPAAFGVLQASYF 463 (562)
Q Consensus 395 -~~----g-vl~~~~~~~~~i~-----w~~l~l~~~~~~l~~~l~~tGi~~~ia~~l~~~~~~~~~~~~~~~~~l~~~~~ 463 (562)
.. | +.+.||+.+.-.+ -..+++++-+-.+...++++++.+.++....+.+++.+.+.....+.+.+...
T Consensus 319 ivyG~~~g~ik~~~di~~~m~~g~~~m~~~~vli~~A~~f~~~f~~s~i~~~ia~~~A~~L~~~~l~~~~~~i~~~l~~~ 398 (513)
T TIGR00819 319 IAYGIATRSIRGEADLPHAMAEPMKELAGFIVIIFFAAQFVAFFNWSNIGKFIAVGGADFLEESGLAGIPAFIGFALICA 398 (513)
T ss_pred HHHHhhcCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Confidence 12 2 2567776542111 12333444444566789999999999999999886555443344444555566
Q ss_pred HHHHHhchhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhhhhhccccch-hhHHhhcCC---CCCHHHHHHHhHH
Q 008532 464 LIHYLFASQTGHVGALYSAFLAMHLAAGVPGVLAALALAYNTNLFGAITHYSSG-QAAVYYGAG---YIDLPDVFKMGFT 539 (562)
Q Consensus 464 ~~~~~f~S~~a~~~il~Pi~~~la~~~Gv~p~~~~l~l~~~~~~~~~~tP~~s~-~n~i~~~~g---~i~~~d~~k~g~~ 539 (562)
++..++.|.++...+++|++.|++..+|++|....++..++.+....++|.+.. +..+.+-.. +....+.+...+|
T Consensus 399 ~iNlfI~S~Sgkwal~aPI~vPm~~~lGisp~~t~~AyriGDs~tNiItP~~~y~~lil~~~~~y~k~~g~Gtl~s~mlP 478 (513)
T TIGR00819 399 FICLFIASASAIWAILAPIFVPMFMLAGFAPAFAQAAFRIADSSTLIIAPMMPFFGLFLAFLMKYKKDAGLGTLISLMLP 478 (513)
T ss_pred HHHheeccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhchHHHhhccCcchHHHHHHHHHHhccCCcHHHHHHHHHH
Confidence 777789999999999999999999999999999999999998877788887422 222333222 3668999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc
Q 008532 540 MALVNAIIWGVTGTFWWKFLGL 561 (562)
Q Consensus 540 ~~li~~vi~~~v~~~~w~~lGl 561 (562)
+++...+.+......||-++|+
T Consensus 479 ysi~~l~~w~~l~~~w~~~~gl 500 (513)
T TIGR00819 479 YPAFFLIAWIALFCAWVFVLGL 500 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHcCC
Confidence 9999999999988888877565
|
The p-Aminobenzoyl-glutamate transporter family includes two transporters, the AbgT (YdaH) protein of E. coli and MtrF of Neisseria gonorrhoea. AbgT is apparently cryptic in wild type cells, but when expressed on a high copy number plasmid, or when expressed at higher levels due to mutation, it allows utilization of p-aminobenzoyl-glutamate as a source of p-aminobenzoate for p-aminobenzoate auxotrophs. p-Aminobenzoate is a constituent of and a precursor for the biosynthesis of folic acid. |
| >COG1288 Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.7e-16 Score=159.85 Aligned_cols=347 Identities=15% Similarity=0.086 Sum_probs=226.5
Q ss_pred HHHHHhCHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhhhcCCChhhhhhHhHHHHHHHHHHHcCCCCCCCCcchhhhHH
Q 008532 185 RGFVKTGLGDRIATYFVKWLGKSTLGLSYGLTFSEALIAPAMPSTTARAGGVFLPIIKSLSLSAGSKPGDSSSKKLGSYL 264 (562)
Q Consensus 185 ~al~~tGl~~ria~~i~~~~g~~~~~l~~~l~l~~~~ls~~~~s~~a~~~~i~~Pi~~~i~~~~g~~p~~~~~~~~~~~l 264 (562)
..++|||..|+--+.+.++.+|+...+...++.+..+-..+....--. ..++|+..+++.++|+|+- .-
T Consensus 111 GIvnkTGaid~Gi~ali~k~kG~e~llI~~l~ilFslgGt~~Gm~EEa--iaFypIliPv~ialGyDsi---------~~ 179 (481)
T COG1288 111 GIVNKTGAIDAGIAALIRKTKGKEFLLIPVLFILFSLGGTVFGMGEEA--IAFYPILIPLMVALGYDSI---------TG 179 (481)
T ss_pred eeeeccchHHHHHHHHhhhcCCCeEEEeeHHHHHHHhccccccchHHH--HHHHHHHHHHHHHhCCchH---------HH
Confidence 457899999999999999999888888888888777777777665544 5899999999999999863 11
Q ss_pred HHHhHHhhhhhcccccccchhHHHHHHHHHH-cCCcccccHHHHHHHHHH--HHHHHHHHHHHHHHHhcCCCCCC-CCCh
Q 008532 265 IQSQFQSAGNSSALFLTAAAQNLLCLKLAEE-LGVIISSPWVSWFKAACV--PALVALLATPLILYKLYPPEVKD-TPDA 340 (562)
Q Consensus 265 ~l~~~~~~~~~g~~t~~g~~~n~i~~g~~~~-~G~~i~~~~~~w~~~~~~--~~li~~~~~~~~~~~~~~~~~~~-~~~~ 340 (562)
+..+..++.+|.+ ++-.|+...+.+++ +|.++. -+-.++...- ..+..+...+++..++.|++.+. ..+.
T Consensus 180 va~i~lgt~iG~~----~St~NPF~~~IAq~iAGip~~--sG~~~Riv~~v~~~~~~i~y~~~Ya~KvkkdP~~S~v~~~ 253 (481)
T COG1288 180 VAIIYIGTQIGFA----ASTMNPFATVIAQNIAGIPFL--SGMGLRIVVWVVFTLISIIYVYWYASKVKKDPTLSLVYED 253 (481)
T ss_pred HHHHHHHhccchh----hhhcCchHHHHHhhhcCCccc--ccchHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccc
Confidence 2223344443432 23467777777776 676554 2333343321 22223333333444443322111 1122
Q ss_pred hHHHHH----HhhhcCCCCHHHHHHHHHHHHHHHHHHhcCCC-C--CC-hHHHHHHHHHHHHHhCCcChHHHhhccCChh
Q 008532 341 PAMAAK----KLKQLGPVTRNEWIMVGTMLLAVSLWIFGDAL-G--IP-SVVAAMIGLSILLLLGVLDWDDCLSEKSAWD 412 (562)
Q Consensus 341 ~~~~~~----~~~~~g~~t~~e~~~l~i~~~~i~l~i~~~~~-g--i~-~~~vall~~~ll~~~gvl~~~~~~~~~i~w~ 412 (562)
+|+.+| +.++..+++.++|..+.++.+++...+.+-.. | .+ .+...+...++..+.+-++.||..+..++ +
T Consensus 254 ~~e~r~~f~~~~~~~~~Ft~~~klvL~lf~l~f~~mI~GV~~~GW~f~eiA~~Fl~mgIiig~I~glse~~~~~sF~~-G 332 (481)
T COG1288 254 DEEFRETFKVEDSGERPFTFRDKLVLLLFTLTFVIMIWGVIVLGWWFPEIAAQFLAMGIIIGLIGGLSENDIASSFIE-G 332 (481)
T ss_pred hHHHHHHhhhccccccccchhhhHHHHHHHHHHHHHHHHhhhhceehHHHHHHHHHHHHHHHHHhccchhHHHHHHHH-h
Confidence 233233 12222368899999999998888777654321 2 11 22222222233333456788887653333 2
Q ss_pred HHHHHHH--HHHHHHH----HHHhCHHHHHHHHHHHhhccCCCchHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHH
Q 008532 413 TLAWFAV--LVGMAGQ----LTNLGIVTWMSDSVAKCLQSFSLSWPAAFGVLQASYFLIHYLFASQTGHVGALYSAFLAM 486 (562)
Q Consensus 413 ~l~l~~~--~~~l~~~----l~~tGi~~~ia~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~f~S~~a~~~il~Pi~~~l 486 (562)
.==++++ .+++++. +++.-+.|.+-+...+.+++.+. ......+.+.....+..+.|.++.+++.+|+..|+
T Consensus 333 a~~lv~~aLiiGiARgI~lim~~g~i~dTiL~~~~~~lsgls~--~~f~i~mli~~~~l~f~VpS~SG~A~ltMPImAPL 410 (481)
T COG1288 333 ASDLLGVALIIGLARGINLIMDDGMILDTILNYLASLLSGLSS--AVFAIGMLIFQALLNFFVPSGSGLAVLTMPIMAPL 410 (481)
T ss_pred HHHHHHHHHHHHhhhceEEEecCcchHHHHHHHHHHHHhcCCH--HHHHHHHHHHHHHheEEEeCCCchhHhhchhhhhh
Confidence 2222333 3444544 56777889999999998887653 34444555666677778899999999999999999
Q ss_pred HHHcCCCHHHHHHHHHHHHhhhhhhccccchhhHHhhcCCCCCHHHHHHHhHHHHHHHHHHHHHHH
Q 008532 487 HLAAGVPGVLAALALAYNTNLFGAITHYSSGQAAVYYGAGYIDLPDVFKMGFTMALVNAIIWGVTG 552 (562)
Q Consensus 487 a~~~Gv~p~~~~l~l~~~~~~~~~~tP~~s~~n~i~~~~g~i~~~d~~k~g~~~~li~~vi~~~v~ 552 (562)
++..|+++.....+...+.+...+++|.| +..+...+.+++++.+|+|+..|+.++..++..++.
T Consensus 411 aD~vgv~RqvvV~Afq~g~G~~n~I~PTS-g~~ma~La~~~i~y~~W~Kfv~pl~~i~~li~~~~l 475 (481)
T COG1288 411 ADLVGVPRQVVVLAFQLGDGFSNIIAPTS-GLLMATLAMARVPYGTWLKFVAPLLGILFLISSVVL 475 (481)
T ss_pred HHhcCCCHHHhhhhhhhcchhhheecCch-HHHHHHHHHccCChhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998888888777778863 444555678899999999999999998887765543
|
|
| >PRK15445 arsenical pump membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=7.4e-17 Score=173.04 Aligned_cols=193 Identities=17% Similarity=0.169 Sum_probs=160.3
Q ss_pred HHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHhCCcChHHHhh-ccCChhHHHHHHHHHHHHHHHHHhCHHHHHHH
Q 008532 360 IMVGTMLLAVSLWIFGDALGIPSVVAAMIGLSILLLLGVLDWDDCLS-EKSAWDTLAWFAVLVGMAGQLTNLGIVTWMSD 438 (562)
Q Consensus 360 ~~l~i~~~~i~l~i~~~~~gi~~~~vall~~~ll~~~gvl~~~~~~~-~~i~w~~l~l~~~~~~l~~~l~~tGi~~~ia~ 438 (562)
.++.++++++.+|+.++. ++|...+++++..++.+.|++++||+++ .+++|++++++.|++.++.+++++|+.|++++
T Consensus 2 ~~l~i~~~~~~~~~~~~~-~ip~~~~all~~~ll~~~gv~~~~~a~~~~~~~~~~i~l~~g~~vi~~~l~~tGl~~~ia~ 80 (427)
T PRK15445 2 LAIAIFLLTLVLVIWQPK-GLGIGWSALLGAVLALLTGVVSLGDVPVVWGIVWNATLTFIAIIIISLLLDEAGFFEWAAL 80 (427)
T ss_pred HHHHHHHHHHHHHhcccC-CCChHHHHHHHHHHHHHHcCCCHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 356788888888888763 6899999999999999999999999874 36999999999999999999999999999999
Q ss_pred HHHHhhccCCCchHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHcCCCH---HHHHHHHHHHHhhhhhhcccc
Q 008532 439 SVAKCLQSFSLSWPAAFGVLQASYFLIHYLFASQTGHVGALYSAFLAMHLAAGVPG---VLAALALAYNTNLFGAITHYS 515 (562)
Q Consensus 439 ~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~f~S~~a~~~il~Pi~~~la~~~Gv~p---~~~~l~l~~~~~~~~~~tP~~ 515 (562)
.+.+..++.+ +...+.+.....+++ .|.||++++.++.|+...++++.|.|| ....+..++.++..+..+|.+
T Consensus 81 ~~~~~~~~~~--~~l~~~~~~~~~~ls--~~~sn~~~~~i~~Pi~~~i~~~~g~~~~~~~~~~~~~~~~a~~~~~~~~ig 156 (427)
T PRK15445 81 HVARWAKGNG--RKLFVYIVLLGAAVA--ALFANDGAALILTPIVLAMLLALGFSKKATLAFVMAAGFIADTASLPLVVS 156 (427)
T ss_pred HHHHHhCCCH--HHHHHHHHHHHHHHH--HHHhhHHHHHHHHHHHHHHHHHcCCCcccchHHHHHHHHHhcccccccccC
Confidence 9998766432 222333333333333 477999999999999999999999999 566677777777677778999
Q ss_pred chhhHHhhcCCCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 008532 516 SGQAAVYYGAGYIDLPDVFKMGFTMALVNAIIWGVTGTFWWK 557 (562)
Q Consensus 516 s~~n~i~~~~g~i~~~d~~k~g~~~~li~~vi~~~v~~~~w~ 557 (562)
+++|.+..+..++++.||+|++.|..++..++...+.+.+|+
T Consensus 157 ~~~N~i~~~~~~i~f~d~~~~~~p~~ii~~~~~~~~~~~~~r 198 (427)
T PRK15445 157 NLVNIVSADYFGIGFAEYASVMVPVNLVSLAASLLVLWLYFR 198 (427)
T ss_pred CchHhhhhccCCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 999998888778999999999999999999888877776664
|
|
| >PF02447 GntP_permease: GntP family permease; InterPro: IPR003474 This is a family of integral membrane permeases that are involved in gluconate uptake | Back alignment and domain information |
|---|
Probab=99.75 E-value=3e-15 Score=158.15 Aligned_cols=381 Identities=15% Similarity=0.111 Sum_probs=222.8
Q ss_pred CCChHHHHHHHHHHHHHhcCCChHHHHH----hcc---chHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhCCChhhHH
Q 008532 140 PLPVGAWAFLGLTTSIVTRTLAFPTAFA----AFT---NEVIWLIVISFFFARGFVKTGLGDRIATYFVKWLGKSTLGLS 212 (562)
Q Consensus 140 ~~p~~~~all~~~ll~l~gv~~~~~~~~----~~~---~~~i~li~~~~~la~al~~tGl~~ria~~i~~~~g~~~~~l~ 212 (562)
++|+...-+++.....+...++++|+.+ +|+ .+.-+.+..+.++++.+++||..||+++.+++++|.++. .
T Consensus 21 klhpF~aLl~~al~~gl~~G~~~~~i~~~i~~GfG~tl~~igivI~lG~~iG~~l~~SGaa~~IA~~l~~~~G~k~~--~ 98 (441)
T PF02447_consen 21 KLHPFLALLIVALIVGLLAGMPPEEIVKSITKGFGSTLGSIGIVIALGAMIGKLLEESGAAERIANTLLKKFGEKRA--P 98 (441)
T ss_pred hhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHcCCCcc--c
Confidence 5888887777777777776788877533 343 366777888899999999999999999999999987633 3
Q ss_pred HHHHHHHHHhhhcCCChhhhhhHhHHHHHHHHHHHcCCCCCCCCcchhhhHHHHHhHHhhhhhcccccccchhHHHHHHH
Q 008532 213 YGLTFSEALIAPAMPSTTARAGGVFLPIIKSLSLSAGSKPGDSSSKKLGSYLIQSQFQSAGNSSALFLTAAAQNLLCLKL 292 (562)
Q Consensus 213 ~~l~l~~~~ls~~~~s~~a~~~~i~~Pi~~~i~~~~g~~p~~~~~~~~~~~l~l~~~~~~~~~g~~t~~g~~~n~i~~g~ 292 (562)
+++.+.+++++.=+-.+.+. .++.|+.++++++.|.+. +.++....++...........|++++.
T Consensus 99 ~A~~i~g~iv~IPvF~dv~~--viL~Pl~~~la~~~~~s~-----------~~~~~~l~~gl~~~h~lvPPtPgpla~-- 163 (441)
T PF02447_consen 99 LALAITGFIVGIPVFFDVGF--VILAPLAFSLARKTGKSL-----------LYLALPLAAGLSVTHALVPPTPGPLAA-- 163 (441)
T ss_pred HHHHHHHHHhhhHHHHHHHH--HHHHHHHHHHHHHhCCCH-----------HHHHHHHHHHHHHhhhccCCCCcHHHH--
Confidence 34444455554322233444 689999999999987542 233333333332222233333555543
Q ss_pred HHHcCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCC-hhHHHHHHhhhcCCCCHHHHHHHHHHHHHHHH
Q 008532 293 AEELGVIISSPWVSWFKAACVPALVALLATPLILYKLYPPEVKDTPD-APAMAAKKLKQLGPVTRNEWIMVGTMLLAVSL 371 (562)
Q Consensus 293 ~~~~G~~i~~~~~~w~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~t~~e~~~l~i~~~~i~l 371 (562)
++..| .+ .+....+|++.++...++...+..++.+++.+..++ ..|..+++.++.++.. .-...+...++-+++
T Consensus 164 a~~lg--~d--lG~~il~Gl~vaip~~~iag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lP-s~~~s~~~illPiiL 238 (441)
T PF02447_consen 164 AGALG--AD--LGLVILYGLIVAIPAMLIAGPLYGRFISKRIPIPPPEISESAEEEETDEKKLP-SFGLSLLPILLPIIL 238 (441)
T ss_pred HHHhC--CC--hhHHHHHhHHHHHHHHHHHHHHHHHHhccCCCCCCcchhhhhhhhhhcccccc-hHHHHHHHHHHHHHH
Confidence 33345 45 668889999888776665443444444433322222 1111111111111211 112222222222222
Q ss_pred HHhcCC----C----C-------CChHHHHHH-HHHHHH-HhC---CcChHHH---hhccCC--hhHHHHHHHHHHHHHH
Q 008532 372 WIFGDA----L----G-------IPSVVAAMI-GLSILL-LLG---VLDWDDC---LSEKSA--WDTLAWFAVLVGMAGQ 426 (562)
Q Consensus 372 ~i~~~~----~----g-------i~~~~vall-~~~ll~-~~g---vl~~~~~---~~~~i~--w~~l~l~~~~~~l~~~ 426 (562)
...+.. + . +....+|++ ++++.. ..+ -.+.||. .++.++ -.+++..+++-+++++
T Consensus 239 I~~~t~~~~~~~~~~~~~~~~~flG~p~iALlig~l~a~~~l~~~~~~~~~~~~~~~~~al~~~g~IlLItgaGGafg~v 318 (441)
T PF02447_consen 239 ILLGTVADLFLPKGSPLRSILSFLGDPNIALLIGVLIALYLLGRRRGMSREEVMKWLEKALKPAGMILLITGAGGAFGQV 318 (441)
T ss_pred HHHHHHHHhccCCcchHHHHHHHhCCcHHHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHHHhhhcchHHHHHH
Confidence 222111 1 0 222233433 333322 122 2334442 122222 3577888889999999
Q ss_pred HHHhCHHHHHHHHHHHhhccCCCchHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHH
Q 008532 427 LTNLGIVTWMSDSVAKCLQSFSLSWPAAFGVLQASYFLIHYLFASQTGHVGALYSAFLAMHLAA-GVPGVLAALALAYNT 505 (562)
Q Consensus 427 l~~tGi~~~ia~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~f~S~~a~~~il~Pi~~~la~~~-Gv~p~~~~l~l~~~~ 505 (562)
++++|+.|.+++.+.+. +.+ .+++-.++..+.+..-.|.+........++.|+..+. |+||....++++.++
T Consensus 319 l~~sgi~~~i~~~~~~~----~ip---~lll~fliaa~lr~aqGSaTVA~iTaa~I~aPl~~~~~~v~p~l~~lAigaGs 391 (441)
T PF02447_consen 319 LKDSGIGDAIANLLSGS----GIP---PLLLAFLIAALLRTAQGSATVAMITAAGIVAPLLASLGGVSPVLLVLAIGAGS 391 (441)
T ss_pred HHhCCHHHHHHHHHHhc----CCc---HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccccccchhHHHHHHHHhcCC
Confidence 99999999999988653 222 2233344445667667888888888888888998888 999998877665543
Q ss_pred hhhhhhccccchhhHHhhcCCCCCHHHHHHHhHHHHHHHHHHHHHHH
Q 008532 506 NLFGAITHYSSGQAAVYYGAGYIDLPDVFKMGFTMALVNAIIWGVTG 552 (562)
Q Consensus 506 ~~~~~~tP~~s~~n~i~~~~g~i~~~d~~k~g~~~~li~~vi~~~v~ 552 (562)
-...+...+.--+.-...+.+.||-+|.--....+.-++.....
T Consensus 392 ---~~~shvNDsgFWlv~~~~g~s~k~tlkt~t~~~~i~~v~g~~~~ 435 (441)
T PF02447_consen 392 ---MFFSHVNDSGFWLVKRFFGLSVKQTLKTWTVMTTIASVVGLIIV 435 (441)
T ss_pred ---ceeecCCCCceEEEeccccCCHHHHHHhhHHHHHHHHHHHHHHH
Confidence 23345544443444456678999999887777666555544443
|
Escherichia coli contains several members of this family including GntU, a low affinity transporter [] and GntT, a high affinity transporter [].; GO: 0015128 gluconate transmembrane transporter activity, 0035429 gluconate transmembrane transport, 0016020 membrane |
| >PRK12489 anaerobic C4-dicarboxylate transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.8e-14 Score=151.56 Aligned_cols=340 Identities=14% Similarity=0.126 Sum_probs=213.2
Q ss_pred hcCCChHHHHHHHHHHHHH-hcCCChHHHHHhccchHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhCCChhhHHHHHH
Q 008532 138 LSPLPVGAWAFLGLTTSIV-TRTLAFPTAFAAFTNEVIWLIVISFFFARGFVKTGLGDRIATYFVKWLGKSTLGLSYGLT 216 (562)
Q Consensus 138 ~~~~p~~~~all~~~ll~l-~gv~~~~~~~~~~~~~~i~li~~~~~la~al~~tGl~~ria~~i~~~~g~~~~~l~~~l~ 216 (562)
.+.+..+..+-+++..+.+ +|. ++.+ -.+|++++++..+..++++++||..|++.++..++.++++++..+...
T Consensus 19 ~ggig~g~~gg~g~~il~~~~~~-~p~~----~p~~vil~Ilav~~~~a~Lq~TGgld~lv~~~~k~lrk~pk~i~llap 93 (443)
T PRK12489 19 YGGIGLGLLGGIGLVILVFVFGL-PPGK----PPVDVMLIILAVVTASATLQAAGGLDVMLQIAERLLRRNPKYITILAP 93 (443)
T ss_pred hhhhHHHHHHHHHHHHHHHHcCC-CCCC----CcHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhccChhHHHHHHH
Confidence 4447777777777777665 464 4443 489999999999999999999999999999999998888888887444
Q ss_pred HHHHHhhhcCCChhhhhhHhHHHHHHHHHHHcCCCCCCCCcchhhhHHHHHhHHhhhhhcccccccchhHHHHHHHHHH-
Q 008532 217 FSEALIAPAMPSTTARAGGVFLPIIKSLSLSAGSKPGDSSSKKLGSYLIQSQFQSAGNSSALFLTAAAQNLLCLKLAEE- 295 (562)
Q Consensus 217 l~~~~ls~~~~s~~a~~~~i~~Pi~~~i~~~~g~~p~~~~~~~~~~~l~l~~~~~~~~~g~~t~~g~~~n~i~~g~~~~- 295 (562)
.++.++ .++.|+...+ ..+.|++..+|++.|.+|. +. +....+++.+|..++|++...|.+.. .+++
T Consensus 94 ~vt~l~-afl~~Tg~~v-~~~lPVi~~vA~k~gi~Ps--------rp-La~as~As~lGi~aSpin~~v~~l~~-~l~~~ 161 (443)
T PRK12489 94 FVTYTL-TFLCGTGHVV-YSILPIIYDVALKNGIRPE--------RP-MAAASVASQMGITASPVSAAVVSLVA-MLGNV 161 (443)
T ss_pred HHHHHH-HHhCCcHHHH-HHHHHHHHHHHHHcCCChh--------hh-HHHHHHHHHHHHHhcchhHHHHHHHH-HHHhc
Confidence 444444 7777775224 6999999999999999885 23 34455677777888888777766654 4555
Q ss_pred cC--CcccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCChhHHHHHH----------hh-hcCCCCHHHHHHH
Q 008532 296 LG--VIISSPWVSWFKAACVPALVALLATPLILYKLYPPEVKDTPDAPAMAAKK----------LK-QLGPVTRNEWIMV 362 (562)
Q Consensus 296 ~G--~~i~~~~~~w~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~-~~g~~t~~e~~~l 362 (562)
.+ .+++ +.|....++|..++..++..++.+++-|+ .++.|+.++..+++ .+ ...++++++|...
T Consensus 162 ~~~~~g~~--~f~il~VgIP~~~ig~l~~~l~~~~~gk~-l~~Dp~~q~r~~~~~~~~~~~~~~~~~~~~~~~~~ak~sv 238 (443)
T PRK12489 162 TGEGRHIT--LLDILAVTIPATLIGVLAAALWSLRRGKD-LDKDPEFQERLKDPEFREYVYGTTATLLDKKLPKSAKLAV 238 (443)
T ss_pred cCCCCCcC--HHHHHHHHHHHHHHHHHHHHHHHHHhcCc-cccCHHHHHHhhccccccccccccccccccCCChhHHHHH
Confidence 33 4588 99999999999999888888887776543 33323222211100 11 1125788999999
Q ss_pred HHHHHHHHHHH-hcC------CC-C--CChH----HHHHHHHHHHHHhCCcChHHHhhcc-CCh---hHHHHHHHHHHHH
Q 008532 363 GTMLLAVSLWI-FGD------AL-G--IPSV----VAAMIGLSILLLLGVLDWDDCLSEK-SAW---DTLAWFAVLVGMA 424 (562)
Q Consensus 363 ~i~~~~i~l~i-~~~------~~-g--i~~~----~vall~~~ll~~~gvl~~~~~~~~~-i~w---~~l~l~~~~~~l~ 424 (562)
.+|++.++..+ .+. .. + ++.. ...+..+.+..+.+-.+.+|+.+.. ..- ..+. .++++
T Consensus 239 ~iFl~~i~~vv~~g~~~~~~~~~~~~~l~~~~~i~~~mL~~a~~i~l~~k~~~~~i~~~~vF~sGm~a~v~----I~GiA 314 (443)
T PRK12489 239 WIFLAAIAVVVLLAAFSELRPSFGGKPLSMVLVIQMVMLLTGALILILTKTDPASISNGEVFKSGMIAIVA----IFGIA 314 (443)
T ss_pred HHHHHHHHHHHHHHhcccccCCCCCCcCChHHHHHHHHHHHHHHHHHHcCCCHHHhccchhhHHHHHHHHH----HhhHH
Confidence 99888887776 211 11 1 2222 1133334444455667777764321 111 1222 23333
Q ss_pred HHHH--HhCHHHHHHHHHHHhhccCCCchHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Q 008532 425 GQLT--NLGIVTWMSDSVAKCLQSFSLSWPAAFGVLQASYFLIHYLFASQTGHVGALYSAFLAMHLAAGVPGVLAALALA 502 (562)
Q Consensus 425 ~~l~--~tGi~~~ia~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~f~S~~a~~~il~Pi~~~la~~~Gv~p~~~~l~l~ 502 (562)
+..+ -.+..|.+.+.+.+.+++.+ | ...+.+.+. + ..+-|+.++..+ +.|++..+|++|..+.-..
T Consensus 315 w~~~t~~~~~~~~i~~~~~~~v~~~p--w-~~Av~mf~~---s-~ll~sQAAt~~i----l~Pl~~~LGi~~~~~~a~~- 382 (443)
T PRK12489 315 WMSDTFFGAHMPELKEVLGEMVKEYP--W-TYAIVLFLV---S-KFVNSQAATLAA----IVPVGLALGLDPALLVASM- 382 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHH--H-HHHHHHHHH---H-HHHhhHHHHHHH----HHHHHHHcCCCHHHHHHHH-
Confidence 3221 14567778888888776642 2 122222222 1 123355555554 5557778999998654322
Q ss_pred HHHhhhhhhccc
Q 008532 503 YNTNLFGAITHY 514 (562)
Q Consensus 503 ~~~~~~~~~tP~ 514 (562)
-+++ +-+..|.
T Consensus 383 ~a~~-~~f~~p~ 393 (443)
T PRK12489 383 PACY-GYFFLPT 393 (443)
T ss_pred HHHh-eeEEccC
Confidence 2233 5566663
|
|
| >PRK10472 low affinity gluconate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=4e-14 Score=149.49 Aligned_cols=382 Identities=12% Similarity=0.036 Sum_probs=223.1
Q ss_pred HHHhhc-CCChHHHHHHHHHHHHHhcCCChHHHHHh----cc---chHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhC
Q 008532 134 AGLVLS-PLPVGAWAFLGLTTSIVTRTLAFPTAFAA----FT---NEVIWLIVISFFFARGFVKTGLGDRIATYFVKWLG 205 (562)
Q Consensus 134 ~lw~~~-~~p~~~~all~~~ll~l~gv~~~~~~~~~----~~---~~~i~li~~~~~la~al~~tGl~~ria~~i~~~~g 205 (562)
+..+.+ ++|+.+..+++..+..+...++.++..+. ++ ......+....++++.++|+|..+|+++.+.+++|
T Consensus 18 i~li~k~kl~~fialli~Alivgl~~Gmp~~~~~~~i~~G~g~tlg~i~~iI~lGailG~lLe~SGaa~~IA~~i~~~fG 97 (445)
T PRK10472 18 LFLVMKARMHAFVALMVVSMGAGLFSGMPLDKIAATMEKGMGGTLGFLAVVVALGAMFGKILHETGAVDQIAVKMLKSFG 97 (445)
T ss_pred HHHHHHhCccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHcC
Confidence 333455 68999988888888888777887765433 33 23445677778899999999999999999999998
Q ss_pred CChhhHHHHHHHHHHHhhhcCCChhhhhhHhHHHHHHHHHHHcCCCCCCCCcchhhhHHHHHhHHhhhhhcccccccchh
Q 008532 206 KSTLGLSYGLTFSEALIAPAMPSTTARAGGVFLPIIKSLSLSAGSKPGDSSSKKLGSYLIQSQFQSAGNSSALFLTAAAQ 285 (562)
Q Consensus 206 ~~~~~l~~~l~l~~~~ls~~~~s~~a~~~~i~~Pi~~~i~~~~g~~p~~~~~~~~~~~l~l~~~~~~~~~g~~t~~g~~~ 285 (562)
++ +..+++.+.+++++.=+-.+.+. .++.|+.++++|+.|.+. +.+++..++++..........|
T Consensus 98 ~k--r~~~A~~l~g~iv~iPvF~dv~f--vil~Pl~~~la~~~~~s~-----------~~~~~~l~~gl~~~H~~vPP~P 162 (445)
T PRK10472 98 HS--RAHYAIGLAGLICALPLFFEVAI--VLLISVAFSMARHTGTNL-----------VKLVIPLFAGVAAAAAFLLPGP 162 (445)
T ss_pred cc--cHHHHHHHHHHHHhhHHHHhhHH--HHhHHHHHHHHHHHCCCh-----------HHHHHHHHHHHHhcccccCCCc
Confidence 76 45556666666655322234443 689999999999997643 3333334443333334444446
Q ss_pred HHHHHHHHHHcCCcccccHHHHHHHHHHHHHHHHHH-HHHHHHHhcCCCCCCCCChhHHHHHHhhhcCCCCHHHHHHHHH
Q 008532 286 NLLCLKLAEELGVIISSPWVSWFKAACVPALVALLA-TPLILYKLYPPEVKDTPDAPAMAAKKLKQLGPVTRNEWIMVGT 364 (562)
Q Consensus 286 n~i~~g~~~~~G~~i~~~~~~w~~~~~~~~li~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~e~~~l~i 364 (562)
++++. +++.| .+ .+....+|+++++...++ .+++..++-|+.+.+.+++.+..+++.+|++ .....+..
T Consensus 163 gp~a~--a~~l~--ad--lG~~il~Glivaip~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P----s~~~s~~~ 232 (445)
T PRK10472 163 APMLL--ASQMN--AD--FGWMILIGLCAAIPGMIIAGPLWGNFISRYVELHIPDDISEPHLGEGKMP----SFGFSLSL 232 (445)
T ss_pred HHHHH--HHHhC--CC--HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCchhhhhcccccCCC----ChHHHHHH
Confidence 66654 33345 45 668899999888877555 5555544433222222221111111111111 22344443
Q ss_pred HHHHHHHHHhcCCCC---------------CChHHHHHHHH-HHHH-Hh--C-CcChHHH---hhccC--ChhHHHHHHH
Q 008532 365 MLLAVSLWIFGDALG---------------IPSVVAAMIGL-SILL-LL--G-VLDWDDC---LSEKS--AWDTLAWFAV 419 (562)
Q Consensus 365 ~~~~i~l~i~~~~~g---------------i~~~~vall~~-~ll~-~~--g-vl~~~~~---~~~~i--~w~~l~l~~~ 419 (562)
.++-+++...+...+ +....+|++.. ++.. .. + -.+.|+. .++.+ .-.+++..++
T Consensus 233 illPi~LI~~~t~~~~~~~~~~~~~~~~~flG~p~iALlig~l~a~~~lg~~~~~~~~~~~~~~~~al~~~g~ilLItGa 312 (445)
T PRK10472 233 ILLPLVLVGLKTIAARFVPEGSTAYEWFEFIGHPFTAILVACLVAIYGLAMRQGMPKDKVMEICGHALQPAGIILLVIGA 312 (445)
T ss_pred HHHHHHHHHHHHHHHhcCCCcchHHHHHHHhCChHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHhhhHhheeecC
Confidence 444444433322110 11233444333 3322 12 2 2232332 11111 2356777777
Q ss_pred HHHHHHHHHHhCHHHHHHHHHHHhhccCCCchHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHc---CCCHHH
Q 008532 420 LVGMAGQLTNLGIVTWMSDSVAKCLQSFSLSWPAAFGVLQASYFLIHYLFASQTGHVGALYSAFLAMHLAA---GVPGVL 496 (562)
Q Consensus 420 ~~~l~~~l~~tGi~~~ia~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~f~S~~a~~~il~Pi~~~la~~~---Gv~p~~ 496 (562)
+-+++++++++|+.|.+++.+.+. +.+ .+++-.++..+++..-.|.|.....-..++.|+..+. +++|..
T Consensus 313 GGafg~vL~~sgig~~l~~~~~~~----~~p---~lllaflia~~lr~a~GSaTVA~iTaa~i~apll~~~~~~~~~~~l 385 (445)
T PRK10472 313 GGVFKQVLVDSGVGPALGEALTGM----GLP---IAITCFVLAAAVRIIQGSATVACLTAVGLVMPVIEQLNYSGAQMAA 385 (445)
T ss_pred hHHHHHHHHHCCHHHHHHHHHHhC----CCc---HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCCchhHHH
Confidence 888999999999999999998764 332 1233334445667667788877777777777776544 555665
Q ss_pred HHHHHHHHHhhhhhhccccchhhHHhhcCCCCCHHHHHHHhHHHHHHHHHHHHH
Q 008532 497 AALALAYNTNLFGAITHYSSGQAAVYYGAGYIDLPDVFKMGFTMALVNAIIWGV 550 (562)
Q Consensus 497 ~~l~l~~~~~~~~~~tP~~s~~n~i~~~~g~i~~~d~~k~g~~~~li~~vi~~~ 550 (562)
..++++.++ ....|.....--+.-..-+.|.+|-+|.--+...+.-++..+
T Consensus 386 ~~lAi~aGs---~~~shvNDsgFW~v~~~~gl~~~~tlkt~t~~~ti~~~~~~~ 436 (445)
T PRK10472 386 LSICIAGGS---IVVSHVNDAGFWLFGKFTGATEAQTLKTWTMMETILGTVGAI 436 (445)
T ss_pred HHHHHhCCC---ceeccCCCCcchhhhhhcCCCHHhhhheehHHHHHHHHHHHH
Confidence 555444332 344566555445555666788899888865555554444333
|
|
| >PLN00136 silicon transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.5e-16 Score=167.73 Aligned_cols=173 Identities=16% Similarity=0.112 Sum_probs=147.4
Q ss_pred CCCChHHHHHHHHHHHHHhCCcChHHHhhccCChhHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHhhccCCCchHHHHHH
Q 008532 378 LGIPSVVAAMIGLSILLLLGVLDWDDCLSEKSAWDTLAWFAVLVGMAGQLTNLGIVTWMSDSVAKCLQSFSLSWPAAFGV 457 (562)
Q Consensus 378 ~gi~~~~vall~~~ll~~~gvl~~~~~~~~~i~w~~l~l~~~~~~l~~~l~~tGi~~~ia~~l~~~~~~~~~~~~~~~~~ 457 (562)
.+++.+..++++++++.+.|+.+.+|.++ .+||++++++.|++.++.+++++|+.+++++.+.+..++ + ......+
T Consensus 31 l~i~~~~~Allga~llll~g~~~~~~a~~-~i~~~tl~ll~gmmii~~~L~~tG~~~~ia~~l~~~~~~-~--~~ll~~l 106 (482)
T PLN00136 31 LPIGRTAGALLSAVLMIVFHVISPDDAYA-SIDLPILGLLFATMVVGSYLKNAGMFKHLGRLLAWRSQG-G--RDLLCRV 106 (482)
T ss_pred CCccHHHHHHHHHHHHHHhCCCCHHHHHH-hCCchHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHhcCC-h--HHHHHHH
Confidence 45778888999999999999999999874 799999999999999999999999999999999976432 2 2222222
Q ss_pred HHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhhhhhccccchhhHHhhcCCCCCHHHHHHHh
Q 008532 458 LQASYFLIHYLFASQTGHVGALYSAFLAMHLAAGVPGVLAALALAYNTNLFGAITHYSSGQAAVYYGAGYIDLPDVFKMG 537 (562)
Q Consensus 458 l~~~~~~~~~~f~S~~a~~~il~Pi~~~la~~~Gv~p~~~~l~l~~~~~~~~~~tP~~s~~n~i~~~~g~i~~~d~~k~g 537 (562)
..+..++ +.|.+|++++.++.|+...+++..|+||..+.+.+++++|.++..||+|+++|.+..+.+++++.||+|.+
T Consensus 107 ~~~ta~l--Safl~N~~t~llm~Piv~~la~~~~~~p~~~ll~la~aAn~Gg~~TpiG~p~Nlii~~~~~i~F~dF~~~~ 184 (482)
T PLN00136 107 CVVTALA--SALFTNDTCCVVLTEFVLELAAERNLPAKPFLLALASSANIGSSATPIGNPQNLVIAFNSKITFPKFLLGI 184 (482)
T ss_pred HHHHHHH--HHHhccHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhhhhhccccchheeeCCCCCCHHHHHHHH
Confidence 2333333 35889999999999999999999999999999999999998899999999999999888789999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 008532 538 FTMALVNAIIWGVTGTFWW 556 (562)
Q Consensus 538 ~~~~li~~vi~~~v~~~~w 556 (562)
.|..++.+++...+.+.++
T Consensus 185 ~P~~li~l~v~~~~l~~~~ 203 (482)
T PLN00136 185 LPAMLAGMAVNMVMLLCMY 203 (482)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999998888776665444
|
|
| >COG4664 FcbT3 TRAP-type mannitol/chloroaromatic compound transport system, large permease component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.6e-15 Score=144.78 Aligned_cols=357 Identities=16% Similarity=0.164 Sum_probs=236.6
Q ss_pred hHHHHHhccchHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhhhcCCChhhhhhHhHHHHH
Q 008532 162 FPTAFAAFTNEVIWLIVISFFFARGFVKTGLGDRIATYFVKWLGKSTLGLSYGLTFSEALIAPAMPSTTARAGGVFLPII 241 (562)
Q Consensus 162 ~~~~~~~~~~~~i~li~~~~~la~al~~tGl~~ria~~i~~~~g~~~~~l~~~l~l~~~~ls~~~~s~~a~~~~i~~Pi~ 241 (562)
++..+...+|++..-+=.-..++..+||+|+.|++-+.+-..+|+-+.++.+...+++.+++.-..-..|.+ ..|--|-
T Consensus 55 p~Ri~GiMsN~tLlAIPfF~fMG~vlErsglae~ll~tig~lfg~v~gglA~avi~VgallaatTGvVaAsV-vaMGlIS 133 (447)
T COG4664 55 PQRIFGIMSNDTLLAIPFFTFMGLVLERSGLAEDLLETIGQLFGPVRGGLAYAVIIVGALLAATTGVVAASV-VAMGLIS 133 (447)
T ss_pred HHHHHHHhcCCeeeeeHHHHHHHHHHHhcchHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHhhchHHHHH-HHhhhhc
Confidence 466777777887766656667789999999999999999999999889999999999999998887777765 5777888
Q ss_pred HHHHHHcCCCCCCCCcchhhhHHHHHhHHhhhhhccccccc-chhHHHHHHHHHHcCCcccccHHHHHHHHHHHHHHHHH
Q 008532 242 KSLSLSAGSKPGDSSSKKLGSYLIQSQFQSAGNSSALFLTA-AAQNLLCLKLAEELGVIISSPWVSWFKAACVPALVALL 320 (562)
Q Consensus 242 ~~i~~~~g~~p~~~~~~~~~~~l~l~~~~~~~~~g~~t~~g-~~~n~i~~g~~~~~G~~i~~~~~~w~~~~~~~~li~~~ 320 (562)
+++..+.|||++ +.-++..++ +|+.. -||+.+..-++++.|. + -+|.++....|++....
T Consensus 134 lpiMLryGYd~~----------lAsGvIaAs-----GTLgqiIPPSlvLIVladqlG~--S--Vgdly~gal~PGl~l~~ 194 (447)
T COG4664 134 LPIMLRYGYDRK----------LASGVIAAS-----GTLGQIIPPSLVLIVLADQLGR--S--VGDLYAGALIPGLMLVG 194 (447)
T ss_pred chHHHHhCCCcc----------ccceeEecC-----ceeeeecCcceeeeeeHHhhCC--c--HHHHHHHhhhhhHHHHH
Confidence 888899999864 211222222 22211 1355555445666785 5 66999999999987665
Q ss_pred HHHHHH--HHhcCCCCCCCCChhHHHHHHhhhcCC-CCHHHHHHH------HHHHHHHHHHH-hcCCCCCChHHHHHHHH
Q 008532 321 ATPLIL--YKLYPPEVKDTPDAPAMAAKKLKQLGP-VTRNEWIMV------GTMLLAVSLWI-FGDALGIPSVVAAMIGL 390 (562)
Q Consensus 321 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~-~t~~e~~~l------~i~~~~i~l~i-~~~~~gi~~~~vall~~ 390 (562)
.+..+. +-+.||+.. +.-+++.+ +.+. -++..++.. .++++.+.+-+ ++-...-+.+.....++
T Consensus 195 ~y~~yili~a~l~P~~a--PaLP~ear----~~~~~~~~l~~~vv~~~iPplvLi~lVLGtIf~GiaTpTE~gA~G~~GA 268 (447)
T COG4664 195 LYALYILIMAILRPKSA--PALPLEAR----TLGGSGRQLVKRVVQSLIPPLVLIFLVLGTIFFGIATPTEGGAVGAVGA 268 (447)
T ss_pred HHHHHHHHHHHhCcccC--CCCCHHHh----hccccHHHHHHHHHHHhcchHHHHHHHHHHHHhcccCCcccchhhHHHH
Confidence 555443 334455432 22221111 1111 011111111 12222222222 22222344555666676
Q ss_pred HHHHH-hCCcChHHHhhc------cCChhHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHhhccCCCchHHHHHHHHHHHH
Q 008532 391 SILLL-LGVLDWDDCLSE------KSAWDTLAWFAVLVGMAGQLTNLGIVTWMSDSVAKCLQSFSLSWPAAFGVLQASYF 463 (562)
Q Consensus 391 ~ll~~-~gvl~~~~~~~~------~i~w~~l~l~~~~~~l~~~l~~tGi~~~ia~~l~~~~~~~~~~~~~~~~~l~~~~~ 463 (562)
.++.. -|.+||+.. ++ |+.--+++++.|+-.++-+....|-..|+-+++.+.-++ . .-+++..-...
T Consensus 269 ~~LA~~~~~l~w~~~-~~a~~~T~k~tsmV~~IllGa~~FSlvF~g~~G~~~ve~~l~~lpgg-~----igFli~~~~~i 342 (447)
T COG4664 269 LLLALANGRLNWQMV-KQALDATAKLTSMVLFILLGATVFSLVFYGLNGHAWVEHLLTNLPGG-E----IGFLIVSNILI 342 (447)
T ss_pred HHHHHHhCcccHHHH-HHHHHHHHHHHHHHHHHHHhhHHHHhheeecCchHHHHHHHhcCCCC-c----eeeehHHHHHH
Confidence 66655 578999875 33 334557788888888999999999999999999886433 2 12333322222
Q ss_pred HHHHHhchhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhhhhhccccchhhHHhh--cCCCCCHHHHHHHhHHHH
Q 008532 464 LIHYLFASQTGHVGALYSAFLAMHLAAGVPGVLAALALAYNTNLFGAITHYSSGQAAVYY--GAGYIDLPDVFKMGFTMA 541 (562)
Q Consensus 464 ~~~~~f~S~~a~~~il~Pi~~~la~~~Gv~p~~~~l~l~~~~~~~~~~tP~~s~~n~i~~--~~g~i~~~d~~k~g~~~~ 541 (562)
.....|.+-.-.+.+.+|++.|+++.+|+|++++...++.+.. .++++|.-.-.....= ....++..|.++-..|+.
T Consensus 343 F~LgffldffEiafIivPllaPva~~lgIDliwfGVll~~NlQ-tSFl~PPfgfslfYLrgVAp~~VTt~qIy~G~vPfi 421 (447)
T COG4664 343 FFLGFFLDFFEIAFIIVPLLAPVADKLGIDLIWFGVLLGVNLQ-TSFLHPPFGFSLFYLRGVAPPSVTTGQIYRGAVPFI 421 (447)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHcCCcHHHHHHHHHHhhh-hhccCCCchhhHHHhccCCCCCcchhhhhhccccHH
Confidence 3344588899999999999999999999999999999999886 7888886433221111 234689999999999999
Q ss_pred HHHHHHHHHH
Q 008532 542 LVNAIIWGVT 551 (562)
Q Consensus 542 li~~vi~~~v 551 (562)
.+.+++...+
T Consensus 422 liqvl~~~~~ 431 (447)
T COG4664 422 LIQVLVVILI 431 (447)
T ss_pred HHHHHHHHHH
Confidence 8877665544
|
|
| >PRK14984 high-affinity gluconate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=8.9e-14 Score=146.37 Aligned_cols=379 Identities=12% Similarity=0.067 Sum_probs=219.6
Q ss_pred HHHhhcCCChHHHHHHHHHHHHHhcCCChHHHHHh-------ccchHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhCC
Q 008532 134 AGLVLSPLPVGAWAFLGLTTSIVTRTLAFPTAFAA-------FTNEVIWLIVISFFFARGFVKTGLGDRIATYFVKWLGK 206 (562)
Q Consensus 134 ~lw~~~~~p~~~~all~~~ll~l~gv~~~~~~~~~-------~~~~~i~li~~~~~la~al~~tGl~~ria~~i~~~~g~ 206 (562)
++-..-++|+....+++.....+...++.+|..+. +-.+....+..+.++++.+++||..+|+|+.+++++|+
T Consensus 15 ~li~k~Kl~pf~alli~a~~~gl~~Gm~~~~~~~~i~~G~g~~l~si~iii~lGai~G~~l~~SGaA~~IA~~ii~~~G~ 94 (438)
T PRK14984 15 LLMIRFKMNGFIALVLVALAVGLMQGMPLDKVIGSIKAGVGGTLGSLALIMGFGAMLGKMLADCGGAQRIATTLIAKFGK 94 (438)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHhCc
Confidence 33344458888888888888888878887776443 33467778888999999999999999999999999988
Q ss_pred ChhhHHHHHHHHHHHhhhcCCChhhhhhHhHHHHHHHHHHHcCCCCCCCCcchhhhHHHHHhHHhhhhhcccccccchhH
Q 008532 207 STLGLSYGLTFSEALIAPAMPSTTARAGGVFLPIIKSLSLSAGSKPGDSSSKKLGSYLIQSQFQSAGNSSALFLTAAAQN 286 (562)
Q Consensus 207 ~~~~l~~~l~l~~~~ls~~~~s~~a~~~~i~~Pi~~~i~~~~g~~p~~~~~~~~~~~l~l~~~~~~~~~g~~t~~g~~~n 286 (562)
+ +..+++.+.+++++.-.--+.+- .++.|+.++++|+.|.+. .++......+.... .......|+
T Consensus 95 k--r~~~a~~l~~~il~ipvF~dv~f--vil~Pi~~~lak~~~~~~---------~~~~~~l~~gl~~t--h~~vPP~Pg 159 (438)
T PRK14984 95 K--HIQWAVVLTGFTVGFALFYEVGF--VLMLPLVFTIAASANIPL---------LYVGVPMAAALSVT--HGFLPPHPG 159 (438)
T ss_pred c--chHHHHHHHHHHHhhHHHHHHHH--HHHHHHHHHHHHHhCcCh---------HHHHHHHHHHHHHH--HhCCCCCCc
Confidence 6 34455555666655222122222 589999999999987642 12222222222222 222223345
Q ss_pred HHHHHHHHHcCCcccccHHHHHHHHHHHHHHHHHH-HHHHHHHhcCCCCCCCCChhHHHHHH-h--hhcCCCCHHHHHHH
Q 008532 287 LLCLKLAEELGVIISSPWVSWFKAACVPALVALLA-TPLILYKLYPPEVKDTPDAPAMAAKK-L--KQLGPVTRNEWIMV 362 (562)
Q Consensus 287 ~i~~g~~~~~G~~i~~~~~~w~~~~~~~~li~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~g~~t~~e~~~l 362 (562)
+++. +++.| .+ .+....+|.++++...++ .+++..++-|++ .+.++ +..+++ . +++++. ...+
T Consensus 160 pla~--a~~lg--ad--lG~~il~Glivaip~~~i~g~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~Ps~----~~s~ 226 (438)
T PRK14984 160 PTAI--ATIFN--AD--MGKTLLYGTILAIPTVILAGPVYARFLKGID-KPIPE--GLYSAKTFTEEEMPSF----GVSV 226 (438)
T ss_pred HHHH--HHHhC--CC--HHHHHHHhHHHHHHHHHHHHHHHHHHhccCC-CCCCh--hhcccccccccCCCCh----HHHH
Confidence 5543 23335 45 668899999888877444 444444333322 11121 111111 1 122221 2333
Q ss_pred HHHHHHHHHHHhcCCC------C---------CChHHHHHHHHH-HHH-Hh--C-CcChHHHh---hccCC--hhHHHHH
Q 008532 363 GTMLLAVSLWIFGDAL------G---------IPSVVAAMIGLS-ILL-LL--G-VLDWDDCL---SEKSA--WDTLAWF 417 (562)
Q Consensus 363 ~i~~~~i~l~i~~~~~------g---------i~~~~vall~~~-ll~-~~--g-vl~~~~~~---~~~i~--w~~l~l~ 417 (562)
...++-+++...+... + +....+|++..+ +.. .. + -.+.||.. ++... -.+++..
T Consensus 227 ~~illPi~LI~~~t~~~~~~~~~~~~~~~l~f~G~p~iALlig~l~a~~~lg~~~~~~~~~~~~~~~~al~~~g~IlLI~ 306 (438)
T PRK14984 227 WTSLVPVILMAMRAIAEMILPKGHAFLPVAEFLGDPVMATLIAVLIAMFTFGLNRGRSMDQINDTLVSSIKIIAMMLLII 306 (438)
T ss_pred HHHHHHHHHHHHHHHHHhccCCcchHHHHHHHhCCHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333321110 0 122334443333 322 22 2 12223331 11111 3466777
Q ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHhhccCCCchHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHcCCCHHHH
Q 008532 418 AVLVGMAGQLTNLGIVTWMSDSVAKCLQSFSLSWPAAFGVLQASYFLIHYLFASQTGHVGALYSAFLAMHLAAGVPGVLA 497 (562)
Q Consensus 418 ~~~~~l~~~l~~tGi~~~ia~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~f~S~~a~~~il~Pi~~~la~~~Gv~p~~~ 497 (562)
+++-+++++++++|+.|.+++.+... +.+ .+++-.++..+.+..-.|.|........++.++....|+||...
T Consensus 307 gaGGafg~VL~~sgi~~~i~~~l~~~----~l~---~lllafliaallr~aqGSaTVA~itaa~I~ap~l~~~~~~p~~~ 379 (438)
T PRK14984 307 GGGGAFKQVLVDSGVDKYIASMMHET----NIS---PLLMAWSIAAVLRIALGSATVAAITAGGIAAPLIATTGVSPELM 379 (438)
T ss_pred cChHHHHHHHHhCCHHHHHHHHHHhC----CCC---HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccCccHHHH
Confidence 77899999999999999999988753 222 12233444456676678888777777777777765678999987
Q ss_pred HHHHHHHHhhhhhhccccchhhHHhhcCCCCCHHHHHHHhHHHHHHHHHHHHH
Q 008532 498 ALALAYNTNLFGAITHYSSGQAAVYYGAGYIDLPDVFKMGFTMALVNAIIWGV 550 (562)
Q Consensus 498 ~l~l~~~~~~~~~~tP~~s~~n~i~~~~g~i~~~d~~k~g~~~~li~~vi~~~ 550 (562)
+++++.++ ....|...+.--+.-+..+.+.+|-+|.=.....+.-++...
T Consensus 380 ~lAi~aGs---~~~shvNDsgFWlv~~~~g~~~~~tlkt~T~~~ti~~v~gl~ 429 (438)
T PRK14984 380 VIAVGSGS---VIFSHVNDPGFWLFKEYFNLTIGETIKSWSMLETIISVCGLV 429 (438)
T ss_pred HHHHhCCC---ceeeeCCCCcchhhhhhcCCCHhhhheeehHHHHHHHHHHHH
Confidence 77655443 334566555445555666788888888755555544444333
|
|
| >PRK09804 putative cryptic C4-dicarboxylate transporter DcuD; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.5e-13 Score=143.31 Aligned_cols=358 Identities=11% Similarity=0.082 Sum_probs=230.4
Q ss_pred HHHhccchHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhCC--ChhhHHHHHHHHHHHhhhcCCChhhhhhHhHHHHHH
Q 008532 165 AFAAFTNEVIWLIVISFFFARGFVKTGLGDRIATYFVKWLGK--STLGLSYGLTFSEALIAPAMPSTTARAGGVFLPIIK 242 (562)
Q Consensus 165 ~~~~~~~~~i~li~~~~~la~al~~tGl~~ria~~i~~~~g~--~~~~l~~~l~l~~~~ls~~~~s~~a~~~~i~~Pi~~ 242 (562)
.+++-..+....++...-++..+++.|..|.+.+...|-.++ +|+.++...++++.+++.++||.+..+ .+++..++
T Consensus 68 ~~~s~~~glGl~Im~~~GFa~YM~hIGA~~~lV~~~~kPL~~ik~pYlll~~~~llg~llsl~IpSAaGLa-~lLmatl~ 146 (455)
T PRK09804 68 MLSNRIAGLGLSIMAVGGYARYMERIGASRAMVSLLSRPLKLIRSPYIILSATYVIGQIMAQFITSASGLG-MLLMVTLF 146 (455)
T ss_pred HHhhccccHHHHHHHHHhHHHHHHhhCccHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhccccHHhHH-HHHHHHHH
Confidence 333334678888999999999999999999999999887764 778888899999999999999999876 57777888
Q ss_pred HHHHHcCCCCCCCCcchhhhHHHHHhHHhhhhhcccccccchhHHHHHHHHHHcCCcccccHHHHH-HHHHHHHHHHHHH
Q 008532 243 SLSLSAGSKPGDSSSKKLGSYLIQSQFQSAGNSSALFLTAAAQNLLCLKLAEELGVIISSPWVSWF-KAACVPALVALLA 321 (562)
Q Consensus 243 ~i~~~~g~~p~~~~~~~~~~~l~l~~~~~~~~~g~~t~~g~~~n~i~~g~~~~~G~~i~~~~~~w~-~~~~~~~li~~~~ 321 (562)
++..+.|.+|. ..-++..++. .-...| +++.|..+ +|+.|.+ -.||+ .+..|..+...+.
T Consensus 147 PvLi~~Gvs~~----------~AaaVia~t~-~i~~gP-~s~~~v~a---A~~~g~~----v~~y~~~~q~p~~i~~i~~ 207 (455)
T PRK09804 147 PTLVSLGVSRL----------SAVAVIATTM-SIEWGI-LETNSIFA---AQVAGMK----IATYFFHYQLPVASCVIIS 207 (455)
T ss_pred HHHHHcCCCHH----------HHHHHHHhhh-cccCCC-CCchHHHH---HHHcCCC----hhheeeeccHHHHHHHHHH
Confidence 88888998762 1111111110 001122 23344444 3335754 34766 5666666554444
Q ss_pred HHHHHHHh----cCCCCCCCCChhHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHh---cC-----CCCCChHHHHHHH
Q 008532 322 TPLILYKL----YPPEVKDTPDAPAMAAKKLKQLGPVTRNEWIMVGTMLLAVSLWIF---GD-----ALGIPSVVAAMIG 389 (562)
Q Consensus 322 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~g~~t~~e~~~l~i~~~~i~l~i~---~~-----~~gi~~~~vall~ 389 (562)
..+.-|+| -|||.++.++ .++ +++.++ + ......+ .-++-+++.+. .+ ..+++.....+++
T Consensus 208 iai~h~fwqr~~Dkk~~~~~~~-~~~-~~~~~~--~--~p~~YAl-LP~lPliLil~~~f~~~~~~~~i~l~v~~am~is 280 (455)
T PRK09804 208 VAISHFFVQRAFDKKDKNINHE-QAE-QKALDN--V--PPLYYAI-LPVMPLILMLGSLFLAHVGLMQSELHLVVVMLLS 280 (455)
T ss_pred HHHHHHHHHHHHHhhccccccc-ccc-cccccc--c--CchHHHH-HHHHHHHHHHHHHhhcccccCceeecHHHHHHHH
Confidence 44443333 3333221111 110 111111 0 1111111 11111111111 11 2346776666777
Q ss_pred HHHHHHhCCc---ChHHHhhc------cCC---hhHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHhhccCCCchHHHHHH
Q 008532 390 LSILLLLGVL---DWDDCLSE------KSA---WDTLAWFAVLVGMAGQLTNLGIVTWMSDSVAKCLQSFSLSWPAAFGV 457 (562)
Q Consensus 390 ~~ll~~~gvl---~~~~~~~~------~i~---w~~l~l~~~~~~l~~~l~~tGi~~~ia~~l~~~~~~~~~~~~~~~~~ 457 (562)
..+.++...+ |.|+..++ ++. -+++-++.++-.++..++..|+.|.+.+...+. +. + .....++
T Consensus 281 ~~ia~l~e~ir~r~~k~~~~~~~~ff~GMG~~f~~VV~LIVAA~vFa~GL~aiG~Id~Li~~~~~~-g~-g--~~~~~lv 356 (455)
T PRK09804 281 LTVTMFVEFFRKHNLRETMDDVQAFFDGMGTQFANVVTLVVAGEIFAKGLTTIGTVDAVIRGAEHS-GL-G--GIGVMII 356 (455)
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHhhHHHHHHHHHHhC-CC-c--hHHHHHH
Confidence 7776665432 33333211 111 247778888888999999999999999988874 22 2 1223333
Q ss_pred HHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhhhhhccccchhhHHhhcCCCCCHHHHHHHh
Q 008532 458 LQASYFLIHYLFASQTGHVGALYSAFLAMHLAAGVPGVLAALALAYNTNLFGAITHYSSGQAAVYYGAGYIDLPDVFKMG 537 (562)
Q Consensus 458 l~~~~~~~~~~f~S~~a~~~il~Pi~~~la~~~Gv~p~~~~l~l~~~~~~~~~~tP~~s~~n~i~~~~g~i~~~d~~k~g 537 (562)
+..+.++....-.|+.+....+.|..-++|+++|+||..+.+++.++++++-.++|++ +......|..++|.-|..|..
T Consensus 357 ~~~i~~l~a~l~GSGnAaffAF~~lvp~iA~~~G~~~~~l~lpmq~as~lgRt~SPVa-gviIavAg~a~vSP~eiVKRT 435 (455)
T PRK09804 357 MALVIAICAIVMGSGNAPFMSFASLIPNIAAGLHVPAVVMIMPMHFATTLARAVSPIT-AVVVVTSGIAGVSPFAVVKRT 435 (455)
T ss_pred HHHHHHHHHhhhcCchHHHHHHHHHhHHHHHHcCCCHHHHHHHHHHHHhhccccCchh-hHHhhhccccCCCHHHHHHHh
Confidence 3344444455568889999999999999999999999999999999999999999985 444556688899999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 008532 538 FTMALVNAIIWGVTGTF 554 (562)
Q Consensus 538 ~~~~li~~vi~~~v~~~ 554 (562)
.+.+++.+++..+..+.
T Consensus 436 avPml~g~i~~~i~~~~ 452 (455)
T PRK09804 436 AIPMAVGFVVNMIATIT 452 (455)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999998887765543
|
|
| >TIGR00791 gntP gluconate transporter | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.2e-12 Score=140.87 Aligned_cols=378 Identities=11% Similarity=0.071 Sum_probs=203.6
Q ss_pred hcCCChHHHHHHHHHHHHHhcCCChHHHHH----hcc---chHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhCCChhh
Q 008532 138 LSPLPVGAWAFLGLTTSIVTRTLAFPTAFA----AFT---NEVIWLIVISFFFARGFVKTGLGDRIATYFVKWLGKSTLG 210 (562)
Q Consensus 138 ~~~~p~~~~all~~~ll~l~gv~~~~~~~~----~~~---~~~i~li~~~~~la~al~~tGl~~ria~~i~~~~g~~~~~ 210 (562)
--++|+.+..+++..+..+....+..|..+ +++ ++....+..+.++++.++++|..+|+++.+.+++|+++
T Consensus 19 ~~k~~~~ial~~~a~~~~l~~g~~~~~~~~~i~~g~g~~~~~iglii~lg~~~g~~m~~sGaa~~ia~~i~~~~g~~r-- 96 (440)
T TIGR00791 19 KFKLNTFVALLVVSFGVGLASGMPLDKVVHSIEAGIGGTLGFLALIVGLGAMLGKLLADSGAAQRIALTLLAKFGKSR-- 96 (440)
T ss_pred HHcccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHhcccc--
Confidence 344888888887777776666666655322 333 77888889999999999999999999999999998763
Q ss_pred HHHHHHHHHHHhhhcCCChhhhhhHhHHHHHHHHHHHcCCCCCCCCcchhhhHHHHHhHHhhhhhcccccccchhHHHHH
Q 008532 211 LSYGLTFSEALIAPAMPSTTARAGGVFLPIIKSLSLSAGSKPGDSSSKKLGSYLIQSQFQSAGNSSALFLTAAAQNLLCL 290 (562)
Q Consensus 211 l~~~l~l~~~~ls~~~~s~~a~~~~i~~Pi~~~i~~~~g~~p~~~~~~~~~~~l~l~~~~~~~~~g~~t~~g~~~n~i~~ 290 (562)
..+++++++++++.......+ . .++.|++++++++.|.++. .+.+....+........|...+++. +.
T Consensus 97 ~~~a~~~~~~ilgi~~f~~~~-~-vil~Pi~~~l~~~~g~s~~---------~~a~~~~~~~~~~~~~vPp~Pg~~~-~a 164 (440)
T TIGR00791 97 VQWAVVIAGLIVGLALFFEVG-F-VLLIPLVFSIAAEAKISLL---------KLGIPMVAALSVAHGFLPPHPGPTA-IA 164 (440)
T ss_pred hHHHHHHHHHHHhhHHHHHHH-H-HHHHHHHHHHHHHhCCChH---------HHHHHHHHHHHHhceeCCCCccHHH-HH
Confidence 344555555555433222322 2 5899999999999988652 1212222222223333444444442 22
Q ss_pred HHHHHcCCcccccHHHHHHHHHHHHHHH-HHHHHHHHHHhcCCCCCCCCChhHHHHHHh--hhcCCCCHHHHHHHHHHHH
Q 008532 291 KLAEELGVIISSPWVSWFKAACVPALVA-LLATPLILYKLYPPEVKDTPDAPAMAAKKL--KQLGPVTRNEWIMVGTMLL 367 (562)
Q Consensus 291 g~~~~~G~~i~~~~~~w~~~~~~~~li~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~g~~t~~e~~~l~i~~~ 367 (562)
+ ..| .+ ..+++.++++.++.. ++..+++..+..|+++++ ++.++..+++. ++.++. .+......+-++
T Consensus 165 ~---~~g--~~--~~~~~~~gl~~~i~~~i~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~-~~~~~~~llPil 235 (440)
T TIGR00791 165 N---EYG--AD--IGEVLLYGLIVAIPTVIIAGPLFTKFLGRIVPPS-PEASLGSQKTFSEEEMPSF-GISLFTALLPVI 235 (440)
T ss_pred H---HhC--CC--HHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCC-CchhhhccccccccCCCCc-hhhHHHHHHHHH
Confidence 2 235 45 778999999888775 333444444443432221 21111101111 112221 111122222111
Q ss_pred HHHHH-H----hcCCCC--------CChHHHH-HHHHHHHHH----hCCcChHHHhh---ccCC-hh-HHHHHHHHHHHH
Q 008532 368 AVSLW-I----FGDALG--------IPSVVAA-MIGLSILLL----LGVLDWDDCLS---EKSA-WD-TLAWFAVLVGMA 424 (562)
Q Consensus 368 ~i~l~-i----~~~~~g--------i~~~~va-ll~~~ll~~----~gvl~~~~~~~---~~i~-w~-~l~l~~~~~~l~ 424 (562)
.++.. + .....+ -++ .++ +++.++... .+..+.||..+ +..+ .. ++..++++.+++
T Consensus 236 lii~~~~~~~~~~~~~~~~~~~~~~g~~-~~Alli~~~~a~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~li~~~gg~f~ 314 (440)
T TIGR00791 236 LMAVKTIAELTLPKGSTAYEVVEFIGNP-STAMFIALLVAIYTLGIRRGMPMDQVMDSCGSAIGSIAMILLIIGGGGAFK 314 (440)
T ss_pred HHHHHHHHHHhcCCcccHHHHHHHHcCH-HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111 1 111000 022 234 333332222 23345555322 2222 33 444555688999
Q ss_pred HHHHHhCHHHHHHHHHHHhhccCCCchHHHHHHHHHHHHHHHHHhchhH----HHHHHHHHHHHHHHHHcCCCHHHHHHH
Q 008532 425 GQLTNLGIVTWMSDSVAKCLQSFSLSWPAAFGVLQASYFLIHYLFASQT----GHVGALYSAFLAMHLAAGVPGVLAALA 500 (562)
Q Consensus 425 ~~l~~tGi~~~ia~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~f~S~~----a~~~il~Pi~~~la~~~Gv~p~~~~l~ 500 (562)
+.++++|..|.+++.+.+. +.++ ..+ ..++..+....-.|.+ +...++.|++. +..|+||....++
T Consensus 315 ~vl~~~G~~~~l~~~~~~~----~~~~-~~l--~fli~~~i~~atGS~tva~~~~~~I~~Pil~---~~~g~~~~~~~la 384 (440)
T TIGR00791 315 QVLIDSGVGDYIAELMSGM----NISP-ILM--AWLIAAILRIALGSATVAALTAAGLVAPLLG---QYSGVNPALLVLA 384 (440)
T ss_pred HHHHhcCHHHHHHHHHhcC----CCCH-HHH--HHHHHHHHHHhhcchHHHHHHHHHHHHHHhh---ccCCcCHHHHHHH
Confidence 9999999999999988764 1111 122 2222233333344543 45567777743 3468999877544
Q ss_pred HHHHHhhhhhhccccchhhHHhhcCCCCCHHHHHHHhHHHHHHHHHHHHHHH
Q 008532 501 LAYNTNLFGAITHYSSGQAAVYYGAGYIDLPDVFKMGFTMALVNAIIWGVTG 552 (562)
Q Consensus 501 l~~~~~~~~~~tP~~s~~n~i~~~~g~i~~~d~~k~g~~~~li~~vi~~~v~ 552 (562)
++++ ...+.|...+...+.-+..+.|.||.+|.-.+.+.+.-++...+.
T Consensus 385 --i~aG-~~~~sH~nd~~fwl~~~~~g~~~~~~~k~~~~~~~i~~~~~~~~~ 433 (440)
T TIGR00791 385 --TGAG-SVIASHVNDAGFWLFKEYFGLTVKETLKTWTLLETIISVVGLIGV 433 (440)
T ss_pred --HhcC-CcccccCCCChhhhhhhhcCCCHhhhhhhhhHHHHHHHHHHHHHH
Confidence 4433 123333343333444466778999999987777776665544443
|
This family includes known gluconate transporters of E. coli and Bacillus species as well as an idonate transporter from E. coli. |
| >PRK11339 abgT putative aminobenzoyl-glutamate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=5.6e-13 Score=141.32 Aligned_cols=351 Identities=15% Similarity=0.148 Sum_probs=212.4
Q ss_pred HHHHHHhCHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhhhcCCChhhhhhHhHHHHHHHHHHHcCCCCCCCCcchhhhH
Q 008532 184 ARGFVKTGLGDRIATYFVKWLGKSTLGLSYGLTFSEALIAPAMPSTTARAGGVFLPIIKSLSLSAGSKPGDSSSKKLGSY 263 (562)
Q Consensus 184 a~al~~tGl~~ria~~i~~~~g~~~~~l~~~l~l~~~~ls~~~~s~~a~~~~i~~Pi~~~i~~~~g~~p~~~~~~~~~~~ 263 (562)
....||||+.+..-++.+++.+++.......++. +++.. .++.+. .++.|+...+.+.+|++|-
T Consensus 101 vgvae~sG~i~a~i~~~v~~~p~~~it~ivvf~g---v~s~~-asdaGy--Vvl~PL~a~if~a~Gr~Pl---------- 164 (508)
T PRK11339 101 AGLAERVGLLPALMVKMASHVNARYASYMVLFIA---FFSHI-SSDAAL--VIMPPMGALIFLAVGRHPV---------- 164 (508)
T ss_pred HHHHHHhhHHHHHHHHHHHhCCCchhHHHHHHHH---HHHHH-hhhhhH--HHHHHHHHHHHHHcCCChH----------
Confidence 3567999999999999999877654333333332 22322 244444 5899999999999999873
Q ss_pred HHHHhHHhh-hhhcccccccchhHHHHHHHHHH-cC-----CcccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 008532 264 LIQSQFQSA-GNSSALFLTAAAQNLLCLKLAEE-LG-----VIISSPWVSWFKAACVPALVALLATPLILYKLYPPEVKD 336 (562)
Q Consensus 264 l~l~~~~~~-~~~g~~t~~g~~~n~i~~g~~~~-~G-----~~i~~~~~~w~~~~~~~~li~~~~~~~~~~~~~~~~~~~ 336 (562)
.-++..+++ +.|-...+.-++.-++..|..++ ++ ++++ +...|+.. ..-+++...+.+++..++-.|+..+
T Consensus 165 aGia~~fagvs~GfsAnl~~~~~Dpll~Git~~aA~~~~~~~~v~-~~~N~~F~-~~s~~vl~~v~~~vt~k~vePrlg~ 242 (508)
T PRK11339 165 AGLLAAIAGVGCGFTANLLIVTTDVLLSGISTEAAAAFNPQMHVS-VIDNWYFM-ASSVVVLTIVGGLITDKIIEPRLGQ 242 (508)
T ss_pred HHHHHHHHHHHhhhhhhhccccchhhHHHHHHHHHHhcCCCcccC-ccccHHHH-HHHHHHHHHHHHHHhhheeCCCCCc
Confidence 112222222 22323333333344777777666 33 3343 23344333 2334444555566666665555422
Q ss_pred CCChhHHHHHHhhhcCCCCHHHHHH-------HHHHHHHHHHHHhcC--CC-----C--CC-hHHH---HHHHHHHHH--
Q 008532 337 TPDAPAMAAKKLKQLGPVTRNEWIM-------VGTMLLAVSLWIFGD--AL-----G--IP-SVVA---AMIGLSILL-- 394 (562)
Q Consensus 337 ~~~~~~~~~~~~~~~g~~t~~e~~~-------l~i~~~~i~l~i~~~--~~-----g--i~-~~~v---all~~~ll~-- 394 (562)
..+ + +.++..++|++||+. +.+++..++..+..+ .+ | ++ +-.- ..+....+.
T Consensus 243 ~~~--~----~~~~~~~lt~~ekkgLr~Ag~~~l~~~~~i~~l~lP~~g~Lr~~~tG~l~~Sp~~~siv~~i~~~Fli~G 316 (508)
T PRK11339 243 WQG--N----SDEKLQTLTESQRFGLRIAGVVSLLFIAAIALMVIPENGILRDPINHTVMPSPFIKGIVPLIILFFFVVS 316 (508)
T ss_pred ccc--c----cccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHccCCcccccCCCCCccCChHHHhHHHHHHHHHHHHH
Confidence 111 1 112345589999988 666666665555321 11 2 11 2111 122222111
Q ss_pred -HhC-----CcChHHHhhccCC-------hhHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHhhccCCCchHHHHHHHHHH
Q 008532 395 -LLG-----VLDWDDCLSEKSA-------WDTLAWFAVLVGMAGQLTNLGIVTWMSDSVAKCLQSFSLSWPAAFGVLQAS 461 (562)
Q Consensus 395 -~~g-----vl~~~~~~~~~i~-------w~~l~l~~~~~~l~~~l~~tGi~~~ia~~l~~~~~~~~~~~~~~~~~l~~~ 461 (562)
..| +.+.+|+.+. +. .-.++.++.+- +-...+.++..+.++....+.+++.+.+....++.+++.
T Consensus 317 ivyG~~~g~iks~~Dv~~~-m~~g~~~m~~~ivl~F~~Aq-fia~F~~snlG~ilav~gA~~L~~~~l~~~pl~i~~ill 394 (508)
T PRK11339 317 LAYGIATRTIRRQADLPHL-MIEPMKEMAGFIVMVFPLAQ-FVAMFNWSNMGKFIAVGLTDILESSGLSGIPAFVGLALL 394 (508)
T ss_pred HHHhhhcccccCHHHHHHH-HHHHHHHHHHHHHHHHHHHH-HHHHHHHccCHHHHHHHHHHHHHhCCCCchHHHHHHHHH
Confidence 122 3566776532 21 11222222222 223567889999999888888776655433344445555
Q ss_pred HHHHHHHhchhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhhhhhccccchhhH-Hh-hc--CCCCCHHHHHHHh
Q 008532 462 YFLIHYLFASQTGHVGALYSAFLAMHLAAGVPGVLAALALAYNTNLFGAITHYSSGQAA-VY-YG--AGYIDLPDVFKMG 537 (562)
Q Consensus 462 ~~~~~~~f~S~~a~~~il~Pi~~~la~~~Gv~p~~~~l~l~~~~~~~~~~tP~~s~~n~-i~-~~--~g~i~~~d~~k~g 537 (562)
..++..++.|.++-.+++.|++.|+...+|++|....++.-++.+....++|.+..--+ +. .+ ..+....+++|..
T Consensus 395 ~a~iNlfI~SgSakwai~aPIfVPm~~llGisPe~tq~AyRiGDs~TNiItPl~~y~~lil~~~~~y~k~~g~Gtlis~m 474 (508)
T PRK11339 395 SSFLCMFIASGSAIWSILAPIFVPMFMLLGFHPAFAQILFRIADSSVLPLAPVSPFVPLFLGFLQRYKPDAKLGTYYSLV 474 (508)
T ss_pred HHHHHHccccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHccchhhhcCCchHHHHHHHHHHHHhccCCCHhHHHHHH
Confidence 55777789999999999999999999999999999999999998877888887433211 22 22 2358999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Q 008532 538 FTMALVNAIIWGVTGTFWWKFLGL 561 (562)
Q Consensus 538 ~~~~li~~vi~~~v~~~~w~~lGl 561 (562)
+|+++..++.+.+....||- +||
T Consensus 475 lPysi~~lv~w~~ll~~w~~-~gl 497 (508)
T PRK11339 475 LPYPLIFLVVWLLMLLAWYL-VGL 497 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHH-hCC
Confidence 99999999998888766654 454
|
|
| >COG2610 GntT H+/gluconate symporter and related permeases [Carbohydrate transport and metabolism / Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.68 E-value=8.1e-13 Score=138.29 Aligned_cols=386 Identities=12% Similarity=0.049 Sum_probs=216.3
Q ss_pred HHHhhcCCChHHHHHHHHHHHHHhcCCChHHHH-------HhccchHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhCC
Q 008532 134 AGLVLSPLPVGAWAFLGLTTSIVTRTLAFPTAF-------AAFTNEVIWLIVISFFFARGFVKTGLGDRIATYFVKWLGK 206 (562)
Q Consensus 134 ~lw~~~~~p~~~~all~~~ll~l~gv~~~~~~~-------~~~~~~~i~li~~~~~la~al~~tGl~~ria~~i~~~~g~ 206 (562)
.+-+-.++++.+..+++..+..+.+.++.+++. .++-......+..+-+++..+|+||..+|+|+.+.+++|+
T Consensus 16 ~l~i~~kv~~flal~l~al~~gl~~Gm~~~~i~~~i~~G~ggtlg~i~~Vi~lGam~GkLle~sGaA~~IA~tii~~~G~ 95 (442)
T COG2610 16 LLIIKFKVHPFLALLLVALLVGLLGGMPLLKVVGTIMKGFGGTLGSLALVIGLGAMLGKLLEDSGAAESIADTLIRKFGE 95 (442)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhCc
Confidence 333455688888888877777776667765543 2334456667777889999999999999999999999998
Q ss_pred ChhhHHHHHHHHHHHhhhcCCChhhhhhHhHHHHHHHHHHHcCCCCCCCCcchhhhHHHHHhHHhhhhhcccccccchhH
Q 008532 207 STLGLSYGLTFSEALIAPAMPSTTARAGGVFLPIIKSLSLSAGSKPGDSSSKKLGSYLIQSQFQSAGNSSALFLTAAAQN 286 (562)
Q Consensus 207 ~~~~l~~~l~l~~~~ls~~~~s~~a~~~~i~~Pi~~~i~~~~g~~p~~~~~~~~~~~l~l~~~~~~~~~g~~t~~g~~~n 286 (562)
+ +..+++.+.++++++-+.-..+. .+++|++.+++|+.|.+.. .+....+.+.....+..|.+ |+
T Consensus 96 k--r~~~Al~l~g~i~~~~vF~dv~~--v~l~Pia~alak~~~is~~---------~i~v~la~g~~~~h~~vpP~--Pg 160 (442)
T COG2610 96 K--RALLALVLAGLILGIPVFFDVGF--VLLIPLAFALAKEAGISLL---------KIAVPLAAGLSVTHMFVPPH--PG 160 (442)
T ss_pred c--hHHHHHHHHHHHHhhhHHhhhHH--HHHHHHHHHHHHHcCCCHH---------HHHHHHHHHHHHhcccCCCC--Cc
Confidence 7 46677777888887766555554 6899999999999987642 22222222322233333333 34
Q ss_pred HHHHHHHHHcCCcccccHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCCCCCCCChhHHHHHHhhh--cCCCCHHHHHH--
Q 008532 287 LLCLKLAEELGVIISSPWVSWFKAACVPALV-ALLATPLILYKLYPPEVKDTPDAPAMAAKKLKQ--LGPVTRNEWIM-- 361 (562)
Q Consensus 287 ~i~~g~~~~~G~~i~~~~~~w~~~~~~~~li-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~t~~e~~~-- 361 (562)
++.. ++..|.++. .-..+|...++. .+...+++.++..| +.+..+..++ ..++.++ ++.........
T Consensus 161 pia~--a~~~~a~~g----~~il~g~ivaip~~~iag~~~~~~~~r-~~~~~~~~~~-~~~~~~~~~~ps~g~sl~~~~v 232 (442)
T COG2610 161 PIAA--AGPFGADIG----TVILYGLIVAIPTVIIAGPLFAKLLGR-KIKALPAGEG-SLKELDEKELPSFGVSLATILV 232 (442)
T ss_pred hhhh--hhhcCcchh----HHHHHHHHHHHHHHHHHHHHHHHHHhC-cCCCCchhhc-cccccccccCCccchhhHHHHH
Confidence 4443 333454433 455567666666 44455555543333 3322221111 1111111 22222221111
Q ss_pred --HHHHHHHHHHHHhcCCCC-------CChHHHHHHHHH----HHHHhCCc-ChHHH---hhccCC--hhHHHHHHHHHH
Q 008532 362 --VGTMLLAVSLWIFGDALG-------IPSVVAAMIGLS----ILLLLGVL-DWDDC---LSEKSA--WDTLAWFAVLVG 422 (562)
Q Consensus 362 --l~i~~~~i~l~i~~~~~g-------i~~~~vall~~~----ll~~~gvl-~~~~~---~~~~i~--w~~l~l~~~~~~ 422 (562)
+.++..++.-......+. +....++++..+ ..+..+.- +.++. .++++. -.+++..++.-+
T Consensus 233 pi~lm~l~ti~~~~~~~~~~~~~~~~flg~~~~al~i~ll~ai~~l~~~~~~~~~~~~~~~~~~i~~~~~ilLitgagga 312 (442)
T COG2610 233 PILLMALKTIASLLLPKGSPALEVLEFLGNPVIALLIALLVAIYTLGMGRGRSKNTLMESLESALKPIAMILLITGAGGA 312 (442)
T ss_pred HHHHHHHHHHHHHhcccccchHHHHHHhcChHHHHHHHHHHHHHHHHhcccccHHHHHHHHHhhHHHHHHHHHHHhhhHh
Confidence 111111121111111110 111223332222 22222221 12221 222222 346777788899
Q ss_pred HHHHHHHhCHHHHHHHHHHHhhccCCCchHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHH-HHHHcCC-CHHHHHHH
Q 008532 423 MAGQLTNLGIVTWMSDSVAKCLQSFSLSWPAAFGVLQASYFLIHYLFASQTGHVGALYSAFLA-MHLAAGV-PGVLAALA 500 (562)
Q Consensus 423 l~~~l~~tGi~~~ia~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~f~S~~a~~~il~Pi~~~-la~~~Gv-~p~~~~l~ 500 (562)
+++++.++|+.|.+++.+.+. +.++ ++.-.++....+..-.|.+.....-..++.+ +-++.+. +|..+. .
T Consensus 313 fg~Vl~~sg~g~~la~~l~~~----~~~p---il~~~iia~~lr~a~GSaTva~~tA~~i~a~~~l~~~~~~~~~~l~-~ 384 (442)
T COG2610 313 FGQVLADSGVGDYLASLLSGT----GLSP---LLLAFIVAALLRIATGSATVAMITAAGIVAPPLLAQLGAVNPEALH-V 384 (442)
T ss_pred hhhHHHhcchhHHHHHHHHhC----CCCh---HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhcCCccHHHHH-H
Confidence 999999999999999998864 2221 2222333335555568888888888888887 7676765 553322 2
Q ss_pred HHHHHhhhhhhccccchhhHHhhcCCCCCHHHHHHHhHHHHHHHHHHHHHH
Q 008532 501 LAYNTNLFGAITHYSSGQAAVYYGAGYIDLPDVFKMGFTMALVNAIIWGVT 551 (562)
Q Consensus 501 l~~~~~~~~~~tP~~s~~n~i~~~~g~i~~~d~~k~g~~~~li~~vi~~~v 551 (562)
++.+++ ....++...+.-.++-+..+.+.||-+|.-.....+..++....
T Consensus 385 lA~~aG-s~~~sh~nDs~Fw~~~~~~glt~ket~k~wt~~~ti~~~vgl~~ 434 (442)
T COG2610 385 LATAAG-SVIFSHVNDSGFWLVKGYFGLTVKETLKTWTVLTTIISVVGLVG 434 (442)
T ss_pred HHHhcc-CceEeeecCCeEEEeeeecCCCHHHHHHHhHHHHHHHHHHHHHH
Confidence 344443 34445665554445556667788888887666666655555333
|
|
| >COG2056 Predicted permease [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.4e-13 Score=133.53 Aligned_cols=357 Identities=16% Similarity=0.161 Sum_probs=217.7
Q ss_pred CChHHHHHHHHHHHHHhcCCChHHHHHhccc------hHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhCC--------
Q 008532 141 LPVGAWAFLGLTTSIVTRTLAFPTAFAAFTN------EVIWLIVISFFFARGFVKTGLGDRIATYFVKWLGK-------- 206 (562)
Q Consensus 141 ~p~~~~all~~~ll~l~gv~~~~~~~~~~~~------~~i~li~~~~~la~al~~tGl~~ria~~i~~~~g~-------- 206 (562)
+|.-..-++......+.|.++.+|..+.|.+ ++-.-.+-+=.++.+..|||+.|.+++++.++.++
T Consensus 19 vnVvlaL~isAlvaGl~~gl~l~eti~~f~~GlgG~a~vALSYalLGafAvaIsksGltd~l~~kvi~~i~~~~~~~~~~ 98 (444)
T COG2056 19 VNVVLALIISALVAGLVGGLGLTETINAFISGLGGNANVALSYALLGAFAVAISKSGLTDVLAKKVIRLLGGDESRRGKT 98 (444)
T ss_pred HHHHHHHHHHHHHHHhhcCCcHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccccchh
Confidence 4444444445555566777887776665432 33333333445688999999999999999999876
Q ss_pred -ChhhHHHHHHHHHHHhhhcCCChhhhhhHhHHHHHHHHHHHcCCCCCCCCcchhhhHHHHHhHHhhhhhcccccccch-
Q 008532 207 -STLGLSYGLTFSEALIAPAMPSTTARAGGVFLPIIKSLSLSAGSKPGDSSSKKLGSYLIQSQFQSAGNSSALFLTAAA- 284 (562)
Q Consensus 207 -~~~~l~~~l~l~~~~ls~~~~s~~a~~~~i~~Pi~~~i~~~~g~~p~~~~~~~~~~~l~l~~~~~~~~~g~~t~~g~~- 284 (562)
+.+.+...+.+.+....-.+|-..|-. -++.|-.+.+..+++.|. | .+.-...++-....+..|+|-+
T Consensus 99 ~~K~~l~~~i~~~a~~SQNliPVHIAFI-PilIPPLL~lfn~LkiDR------R---~vAc~ltFGL~apYi~LPvGFG~ 168 (444)
T COG2056 99 LKKYLLLLIILLIACFSQNLIPVHIAFI-PILIPPLLSLFNKLKIDR------R---LVACVLTFGLTAPYILLPVGFGL 168 (444)
T ss_pred hHHHHHHHHHHHHHHhcCCccceeeeee-hhhhhHHHHHHHHhhhhH------H---HHHHHhhcccccceeEecchHHH
Confidence 444444555555555555555555544 467777888888887763 2 2333344555556677777754
Q ss_pred --hHHHHHHHHHHcCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCChhHHHHHHhhhcCCCC-HHHHHH
Q 008532 285 --QNLLCLKLAEELGVIISSPWVSWFKAACVPALVALLATPLILYKLYPPEVKDTPDAPAMAAKKLKQLGPVT-RNEWIM 361 (562)
Q Consensus 285 --~n~i~~g~~~~~G~~i~~~~~~w~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t-~~e~~~ 361 (562)
++++.-+ .++.|.+++ ..+-++.+..|++-+++-..+-.+..|||+++.+.+..+..++..++..+.+ ++++.+
T Consensus 169 IF~~ii~~n-~~~a~~~~~--~~~V~~am~ip~lgMi~GLl~ai~~~YrKpReY~~~~~~~~~~~~~~~~~~~~~~~~~a 245 (444)
T COG2056 169 IFQSIILDN-INAAGVSLS--VNQVPKAMWIPGLGMIVGLLLAIFVSYRKPREYQTNEIEEAENAIEDYAALEEYKLALA 245 (444)
T ss_pred HHHHHHHHH-HHhcCCCcc--hhhhHHHHHHHHHHHHHHHHHHHHHhhcCCccccccccchhhhhhhhhcchhhHHHHHH
Confidence 2333322 222455566 6677788888876655544444444355433221111111111111111111 444444
Q ss_pred HHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHhCCcChHHHhhccCChh------HHHHHHHHHHHHHHHHHhCHHHH
Q 008532 362 VGTMLLAVSLWIFGDALGIPSVVAAMIGLSILLLLGVLDWDDCLSEKSAWD------TLAWFAVLVGMAGQLTNLGIVTW 435 (562)
Q Consensus 362 l~i~~~~i~l~i~~~~~gi~~~~vall~~~ll~~~gvl~~~~~~~~~i~w~------~l~l~~~~~~l~~~l~~tGi~~~ 435 (562)
++..+.++..-... .. -+...-++.+.+++++.|+.+|||. ++.++-+ +=|....+-+++++++++|-.+.
T Consensus 246 lvaiv~af~vQl~~-~~-~smilgal~gliv~~~~gv~~~ke~-d~~~~~G~kmMa~IgFVMl~AaGfa~Vi~~TG~V~~ 322 (444)
T COG2056 246 LVAIVVAFAVQLLT-FT-DSMILGALAGLIVFFLSGVIKWKET-DDVFTEGVKMMAFIGFVMLVAAGFAEVINATGAVEE 322 (444)
T ss_pred HHHHHHHHHHHHHh-cc-ccchHHHHHHHHHHHHhcceehhhh-HHHHHhhHHHHHHHHHHHHHHhHHHHHHHhccCHHH
Confidence 44444444433311 11 1233457888889999999999975 3333311 22333344567899999999999
Q ss_pred HHHHHHHhhccCCCchHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhhhhhcccc
Q 008532 436 MSDSVAKCLQSFSLSWPAAFGVLQASYFLIHYLFASQTGHVGALYSAFLAMHLAAGVPGVLAALALAYNTNLFGAITHYS 515 (562)
Q Consensus 436 ia~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~f~S~~a~~~il~Pi~~~la~~~Gv~p~~~~l~l~~~~~~~~~~tP~~ 515 (562)
+.+...+..++ +. .....++.++..++...+.|.-+++.+...++.|+|.++|.+|......++.++.++..-.|.+
T Consensus 323 LV~s~~~~~g~-sK--~l~a~lMlvvGLlITMGIGsSF~TIPIIA~iyVPLc~~lGFSp~ati~liG~AaALGDAGSPAS 399 (444)
T COG2056 323 LVESSSSIIGQ-SK--LLAALLMLVVGLLITMGIGSSFGTIPIIAAIYVPLCLKLGFSPLATIALIGTAAALGDAGSPAS 399 (444)
T ss_pred HHHHHHHHhcc-cH--HHHHHHHHHHHHHHhccccccccchHHHHHHHHhHHHHhCCCHHHHHHHHHHHHHhcCCCCCcc
Confidence 99999998844 22 3344445555555656789999999999999999999999999988888887777666667764
Q ss_pred c
Q 008532 516 S 516 (562)
Q Consensus 516 s 516 (562)
.
T Consensus 400 D 400 (444)
T COG2056 400 D 400 (444)
T ss_pred c
Confidence 3
|
|
| >cd01117 YbiR_permease Putative anion permease YbiR | Back alignment and domain information |
|---|
Probab=99.66 E-value=6.5e-15 Score=155.97 Aligned_cols=173 Identities=18% Similarity=0.192 Sum_probs=145.4
Q ss_pred CCChHHHHHHHHHHHHHhCCcChHHHhhccCChhHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHhhccCCCchHHHHHHH
Q 008532 379 GIPSVVAAMIGLSILLLLGVLDWDDCLSEKSAWDTLAWFAVLVGMAGQLTNLGIVTWMSDSVAKCLQSFSLSWPAAFGVL 458 (562)
Q Consensus 379 gi~~~~vall~~~ll~~~gvl~~~~~~~~~i~w~~l~l~~~~~~l~~~l~~tGi~~~ia~~l~~~~~~~~~~~~~~~~~l 458 (562)
..+...+++++..++.+.|+.++||+++ +++|++++++++++.++.+++++|+.||+++.+.+..++ +......+.
T Consensus 10 ~~~~~~~a~~~~~ll~~~g~~~~~~~~~-~~~~~~i~~~~g~~~l~~~l~~tGl~~~ia~~l~~~~~~---~~~l~~~~~ 85 (384)
T cd01117 10 RLDRWAIALLGAALMLLFGVISLEDAPA-AIDLDTIILLFGLMVVSAALELSGFFDALGSRILVKAGS---PRRLLFLLV 85 (384)
T ss_pred CCCHHHHHHHHHHHHHHhCCCCHHHHHH-HcCHhHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhcCC---HHHHHHHHH
Confidence 3678889999999999999999999875 799999999999999999999999999999998875332 122222222
Q ss_pred HHHHHHHHHHhchhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhhhhhccccchhhHHhhcCCCCCHHHHHHHhH
Q 008532 459 QASYFLIHYLFASQTGHVGALYSAFLAMHLAAGVPGVLAALALAYNTNLFGAITHYSSGQAAVYYGAGYIDLPDVFKMGF 538 (562)
Q Consensus 459 ~~~~~~~~~~f~S~~a~~~il~Pi~~~la~~~Gv~p~~~~l~l~~~~~~~~~~tP~~s~~n~i~~~~g~i~~~d~~k~g~ 538 (562)
....+++ .+.+|++++.++.|++.++++..|.+|....+..+++++.++..+|+++++|.+.++.+++++.||++.++
T Consensus 86 ~~~~~ls--~~~~n~~~~~~~~Pi~~~l~~~~~~~~~~~~~~~~~aa~~g~~~tp~g~~~n~i~~~~~~i~~~~~~~~~~ 163 (384)
T cd01117 86 LLSGILS--ALLTNDTACLVFTPIVLELARVAGLPPIPLLLALATAANIGSAATPIGNPQNLLIASESGISFPFFLAAMA 163 (384)
T ss_pred HHHHHHH--HHHhhHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHcccccccCCCchhhhhhcCCCCCHHHHHHHHh
Confidence 2333233 46789999999999999999999999999999999999877899999999999998888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 008532 539 TMALVNAIIWGVTGTFWWK 557 (562)
Q Consensus 539 ~~~li~~vi~~~v~~~~w~ 557 (562)
|..++..++..+..+.++|
T Consensus 164 p~~i~~~~~~~~~~~~~~~ 182 (384)
T cd01117 164 PLALLGLLLLLILLLVLFP 182 (384)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999998887776665544
|
Based on sequence similarity, YbiR proteins are predicted to function as anion translocating permeases in eubacteria, archaea and plants. They belong to ArsB/NhaD superfamily of permeases that have been shown to translocate sodium, sulfate, arsenite and organic anions. A typical ArsB/NhaD permease is composed of 8-13 transmembrane domains. |
| >PRK10034 fructuronate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.2e-12 Score=138.62 Aligned_cols=380 Identities=15% Similarity=0.096 Sum_probs=212.6
Q ss_pred HHHHhhc-CCChHHHHHHHHHHHHHhcCCChHHHHH-------hccchHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHh
Q 008532 133 IAGLVLS-PLPVGAWAFLGLTTSIVTRTLAFPTAFA-------AFTNEVIWLIVISFFFARGFVKTGLGDRIATYFVKWL 204 (562)
Q Consensus 133 i~lw~~~-~~p~~~~all~~~ll~l~gv~~~~~~~~-------~~~~~~i~li~~~~~la~al~~tGl~~ria~~i~~~~ 204 (562)
++..+.+ ++|+.+..+++.....+...++.+|..+ ++..+....+....++++.++++|-.+|+++.+.+++
T Consensus 16 li~li~k~k~~~fialli~al~~gl~~Gm~~~~~~~~i~~G~g~~~~si~lii~lGailG~lLe~SGaa~~Ia~~i~~~~ 95 (447)
T PRK10034 16 MLVLNLKFKINSMVALLVAALSVGMLAGMDLMKLLHTMKAGFGNTLGELAIIVVFGAVIGKLMVDSGAAHQIAHTLLARL 95 (447)
T ss_pred HHHHHHHhCccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHh
Confidence 3333444 6899888888888877777777766432 3344667777888889999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHhhhcCCChhhhhhHhHHHHHHHHHHHcCCCCCCCCcchhhhHHHHHhHHhhhhhcccccccch
Q 008532 205 GKSTLGLSYGLTFSEALIAPAMPSTTARAGGVFLPIIKSLSLSAGSKPGDSSSKKLGSYLIQSQFQSAGNSSALFLTAAA 284 (562)
Q Consensus 205 g~~~~~l~~~l~l~~~~ls~~~~s~~a~~~~i~~Pi~~~i~~~~g~~p~~~~~~~~~~~l~l~~~~~~~~~g~~t~~g~~ 284 (562)
|+++ ..+++++.+.+++.-+-.+.+. .++.|++.+++|+.+.++. ...+..+.+....-. .....
T Consensus 96 G~kr--~~~a~~l~g~llGi~vF~dv~~--v~laPi~~~lak~~~~s~~---------~~~~~l~~gl~~~h~--lvPP~ 160 (447)
T PRK10034 96 GLRY--VQLSVIIIGLIFGLAMFYEVAF--IMLAPLVIVIAAEAKIPFL---------KLAIPAVAAATTAHS--LFPPQ 160 (447)
T ss_pred Cccc--hHHHHHHHHHHHhhHHHHHhHH--HhhHHHHHHHHHHhCcCHH---------HHHHHHHHHHHHhhc--ccCCC
Confidence 8764 3344445555542211122232 5789999999999876542 122222223222222 23333
Q ss_pred hHHHHHHHHHHcCCcccccHHHHHHHHHHHHHHHHHH-HHHHHHHhcCCCCCCCCChhHHHHHHhhhcCCCCHHHHHHHH
Q 008532 285 QNLLCLKLAEELGVIISSPWVSWFKAACVPALVALLA-TPLILYKLYPPEVKDTPDAPAMAAKKLKQLGPVTRNEWIMVG 363 (562)
Q Consensus 285 ~n~i~~g~~~~~G~~i~~~~~~w~~~~~~~~li~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~e~~~l~ 363 (562)
|++++. ++..| .+ .++.+.+|.+.++....+ .+++.+++.|++ .+.++.. ..+++.++ ++.. .-...+.
T Consensus 161 Pgpla~--a~~l~--a~--lG~~il~Gl~v~ip~~~~~g~~~~~~~~~~~-~~~~~~~-~~~~~~~~-~~lP-s~~~s~~ 230 (447)
T PRK10034 161 PGPVAL--VNAYG--AD--MGMVYIYGVLVTIPSVICAGLILPKFLGNLE-RPTPSFL-KADQPVDM-NNLP-SFGTSIL 230 (447)
T ss_pred CcHHHH--HHHhC--Cc--HHHHHHHhhHHHHHHHHHHHHHHHHHhcccC-CCCcchh-hhcccccc-CCCC-CcHHHHH
Confidence 455543 33345 45 668889987777665333 444444443322 1111111 11111111 1111 1122222
Q ss_pred HHHHHHHHHHhcC----CC--C---------CChHHHHHHHHHHH-H-H--hCC-cChHHHh---hc--cCChhHHHHHH
Q 008532 364 TMLLAVSLWIFGD----AL--G---------IPSVVAAMIGLSIL-L-L--LGV-LDWDDCL---SE--KSAWDTLAWFA 418 (562)
Q Consensus 364 i~~~~i~l~i~~~----~~--g---------i~~~~vall~~~ll-~-~--~gv-l~~~~~~---~~--~i~w~~l~l~~ 418 (562)
..++.+++.+... .. + +....+|++..++. + . .+. .+.|+.. ++ +..-.+++..+
T Consensus 231 ~illPi~Li~~~t~~~~~~~~~~~~~~~~~fiG~p~iALlig~l~a~~~lg~~~~~~~~~~~~~~~~~l~~~g~IlLitg 310 (447)
T PRK10034 231 VPLIPAIIMISTTIANIWLVKGTPAWEVVNFIGSSPIAMFIAMVVAFVLFGTARGHDMQWVMNAFESAVKSIAMVILIIG 310 (447)
T ss_pred HHHHHHHHHHHHHHHHhccCCcchHHHHHHHhCCHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhhhHhhheec
Confidence 2222233322221 00 0 22233444333332 2 2 221 2323321 11 12245677777
Q ss_pred HHHHHHHHHHHhCHHHHHHHHHHHhhccCCCchHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHH-----HHHHH-cCC
Q 008532 419 VLVGMAGQLTNLGIVTWMSDSVAKCLQSFSLSWPAAFGVLQASYFLIHYLFASQTGHVGALYSAFL-----AMHLA-AGV 492 (562)
Q Consensus 419 ~~~~l~~~l~~tGi~~~ia~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~f~S~~a~~~il~Pi~~-----~la~~-~Gv 492 (562)
++-+++++++++|+.|.+++.+... +.+ .+++-.++..+.+..-.|.|.....-..++. |+... -++
T Consensus 311 aGGafg~vl~~sgi~~~i~~~~~~~----~l~---~lll~fliaa~lr~aqGSaTVA~itaa~i~a~~~~~p~~~~~~~~ 383 (447)
T PRK10034 311 AGGVLKQTIIDTGIGDTIGMLMSHG----NIS---PYIMAWLITVLIRLATGQGVVSAMTAAGIISAAILDPATGQLVGV 383 (447)
T ss_pred ChHHHHHHHHhCCHHHHHHHHHHhC----CCC---HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhccccccccCCcc
Confidence 7889999999999999999988763 222 1233344445667667788777766667776 55433 378
Q ss_pred CHHHHHHHHHHHHhhhhhhccccchhhHHhhcCCCCCHHHHHHHhHHHHHHHHHH
Q 008532 493 PGVLAALALAYNTNLFGAITHYSSGQAAVYYGAGYIDLPDVFKMGFTMALVNAII 547 (562)
Q Consensus 493 ~p~~~~l~l~~~~~~~~~~tP~~s~~n~i~~~~g~i~~~d~~k~g~~~~li~~vi 547 (562)
||...+++++.++ ....+...+.--++-+..+.+.+|-+|.-.+...+.-++
T Consensus 384 ~~~~~vlAi~aGs---~~~shvNDs~FW~v~~~~g~~v~~~lk~~T~~~~i~~v~ 435 (447)
T PRK10034 384 NPALLVLATAAGS---NTLTHINDASFWLFKGYFDLSVKDTLKTWGLLELVNSVV 435 (447)
T ss_pred cHHHHHHHHhCCC---ceeeeCCCCcchhhhhhcCCCHhhhheeeeHHhHHHHHH
Confidence 8887776655443 344566555555555666789999998864444444333
|
|
| >PRK09821 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=5e-13 Score=141.58 Aligned_cols=388 Identities=12% Similarity=0.033 Sum_probs=219.3
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHHhcCCChHHHHH-------hccchHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Q 008532 130 LSTIAGLVLSPLPVGAWAFLGLTTSIVTRTLAFPTAFA-------AFTNEVIWLIVISFFFARGFVKTGLGDRIATYFVK 202 (562)
Q Consensus 130 ~~~i~lw~~~~~p~~~~all~~~ll~l~gv~~~~~~~~-------~~~~~~i~li~~~~~la~al~~tGl~~ria~~i~~ 202 (562)
+..+++-...++|+.+..+++.....+...++.+|+.+ +.-.+...+++.+.+++..+++||..|++++.+++
T Consensus 15 ~~l~~li~k~kl~pf~alii~al~~gl~~G~~~~~i~~~i~~G~g~tl~~~~lii~lGa~~G~~le~SGaa~~Ia~~ii~ 94 (454)
T PRK09821 15 ILLLLLVIKAKVQPFVALLLVSLLVALAAGIPAGEVGKVMIAGMGGVLGSVTIIIGLGAMLGRMIEHSGGAESLANYFTR 94 (454)
T ss_pred HHHHHHHHHhCccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 33444455667999888888888877777788766533 33446777888899999999999999999999999
Q ss_pred HhCCChhhHHHHHHHHHHHhhhcCCChhhhhhHhHHHHHHHHHHHcCCCCCCCCcchhhhHHHHHhHHhhhhhc-ccccc
Q 008532 203 WLGKSTLGLSYGLTFSEALIAPAMPSTTARAGGVFLPIIKSLSLSAGSKPGDSSSKKLGSYLIQSQFQSAGNSS-ALFLT 281 (562)
Q Consensus 203 ~~g~~~~~l~~~l~l~~~~ls~~~~s~~a~~~~i~~Pi~~~i~~~~g~~p~~~~~~~~~~~l~l~~~~~~~~~g-~~t~~ 281 (562)
++|+++ ..+.+.+.+++++.-.-.+++- .++.|+.++++|+.|.++. + +.+..+.+.+... ...|.
T Consensus 95 ~~G~k~--~~~ai~i~~~ilgIpvF~dv~f--vil~Pl~~~l~kk~~~~~~-----~----l~l~~~~~l~~~h~~vPP~ 161 (454)
T PRK09821 95 KLGDKR--TIAALTLAAFILGIPVFFDVGF--IILAPIIYGFAKVAKVSPL-----K----FGLPVAGIMLTVHVALPPH 161 (454)
T ss_pred HhCCCc--hHHHHHHHHHHHhhHHHHHHHH--HHHHHHHHHHHHHhCcCHH-----H----HHHHHHHHHHHcccccCCC
Confidence 998864 3345555666665221113332 5899999999999977542 2 2222221111112 22333
Q ss_pred cchhHHHHHHHHHHcCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC---C-CCChh-HH---HHHH-hhhcC
Q 008532 282 AAAQNLLCLKLAEELGVIISSPWVSWFKAACVPALVALLATPLILYKLYPPEVK---D-TPDAP-AM---AAKK-LKQLG 352 (562)
Q Consensus 282 g~~~n~i~~g~~~~~G~~i~~~~~~w~~~~~~~~li~~~~~~~~~~~~~~~~~~---~-~~~~~-~~---~~~~-~~~~g 352 (562)
+.+.|. ++..|. + ......+|++.++...++.+++..+..|+..+ + .++.. ++ .+++ .++.+
T Consensus 162 Pgp~~~-----a~~Lg~--d--~g~~~l~Giivaip~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (454)
T PRK09821 162 PGPVAA-----AGLLHA--D--IGWLTIIGIAISIPVGIVGYFAAKIINRRQYALSVEVLEQMQLAPASEEGATKLSDKI 232 (454)
T ss_pred hHHHHH-----HHHhCC--C--HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccccccchhcccccccc
Confidence 333332 222464 4 55788889888888777766666555443211 1 01100 00 1110 00111
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhcCC--------------CC-CChHHHHHHHHHHHH--HhC---CcChHHHhhccC---
Q 008532 353 PVTRNEWIMVGTMLLAVSLWIFGDA--------------LG-IPSVVAAMIGLSILL--LLG---VLDWDDCLSEKS--- 409 (562)
Q Consensus 353 ~~t~~e~~~l~i~~~~i~l~i~~~~--------------~g-i~~~~vall~~~ll~--~~g---vl~~~~~~~~~i--- 409 (562)
+.. .....+...++-+++...+.. .. +....+|++..++.. ..| -.+.++. ++.+
T Consensus 233 ~~P-~~~~s~~~illPi~LI~~~t~~~~~~~~~~~~~~~l~fiG~p~iALlig~l~A~~~lg~~~~~~~~~~-~~~~~~a 310 (454)
T PRK09821 233 NPP-GAALITSLIVIPIAIIMLGTVSATLLPPSHPLLGTLQLIGSPMVALLIALVLAFWLLALRRGWSLQHT-SDVMGSA 310 (454)
T ss_pred CCC-CcHHHHHHHHHHHHHHHHHHHHHhhcCCcchHHHHHHHhCCHHHHHHHHHHHHHHHHhhccCCcHHHH-HHHHHHH
Confidence 111 113333333333333222111 00 233344544333332 232 2233332 2111
Q ss_pred ---ChhHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHhhccCCCchHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHH
Q 008532 410 ---AWDTLAWFAVLVGMAGQLTNLGIVTWMSDSVAKCLQSFSLSWPAAFGVLQASYFLIHYLFASQTGHVGALYSAFLAM 486 (562)
Q Consensus 410 ---~w~~l~l~~~~~~l~~~l~~tGi~~~ia~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~f~S~~a~~~il~Pi~~~l 486 (562)
.-.+++..+++-+++++++++|+.|.+++.+.+. +.+ .+++-.++..+.+..-.|.+.+......++.++
T Consensus 311 l~~~g~IlLItgaGGafg~VL~~sgig~~i~~~~~~~----~l~---~lll~flIAa~lr~aqGSaTVA~iTaa~i~ap~ 383 (454)
T PRK09821 311 LPTAAVVILVTGAGGVFGKVLVESGVGKALANMLQMI----HLP---LIPAAFIISLALRASQGSATVAILTTSGLLSEA 383 (454)
T ss_pred HHhhhHhheeecChHHHHHHHHHCCHHHHHHHHHHhC----CCc---HHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Confidence 2456677777899999999999999999988763 222 233334455566777778887766666666666
Q ss_pred HHH-cCCCHHHHHHHHHHHHhhhhhhccccchhhHHhhcCCCCCHHHHHHHhHHHHHHHHHHHHHH
Q 008532 487 HLA-AGVPGVLAALALAYNTNLFGAITHYSSGQAAVYYGAGYIDLPDVFKMGFTMALVNAIIWGVT 551 (562)
Q Consensus 487 a~~-~Gv~p~~~~l~l~~~~~~~~~~tP~~s~~n~i~~~~g~i~~~d~~k~g~~~~li~~vi~~~v 551 (562)
... .+++|....++++.++ ....|...+.--++-...+.+.+|-+|.--....+.-++....
T Consensus 384 ~~~~~~~~~~l~~lAi~aGs---~~~ShvNDsgFWlv~~~~g~~~~~tlkt~T~~~ti~~~~gl~~ 446 (454)
T PRK09821 384 VMGLNPIQCVLVTLAACFGG---LGLSHVNDSGFWIVTKYLGLSVADGLKTWTVLTTILGLTGFLI 446 (454)
T ss_pred hccCCCccHHHHHHHHhcCc---ceeeecCCCcceehhhhcCCCHhhhheeeeHHHHHHHHHHHHH
Confidence 432 3677776666544432 3445665555555556667788888887555554444443333
|
|
| >cd00625 ArsB_NhaD_permease Anion permease ArsB/NhaD | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.5e-15 Score=159.68 Aligned_cols=178 Identities=20% Similarity=0.232 Sum_probs=150.4
Q ss_pred HHHhcCCCCCChHHHHHHHHHHHHHhCCcChHHHhhccCChhHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHhhccCCCc
Q 008532 371 LWIFGDALGIPSVVAAMIGLSILLLLGVLDWDDCLSEKSAWDTLAWFAVLVGMAGQLTNLGIVTWMSDSVAKCLQSFSLS 450 (562)
Q Consensus 371 l~i~~~~~gi~~~~vall~~~ll~~~gvl~~~~~~~~~i~w~~l~l~~~~~~l~~~l~~tGi~~~ia~~l~~~~~~~~~~ 450 (562)
+|+++. ++..++++++..++...|+.++||+.+ +++|++++++++++.++.+++++|+.+|+++.+.+..++.+
T Consensus 3 lw~~~~---~~~~~~al~~~~~l~~~g~~~~~~~~~-~~~~~~i~~~~g~~~l~~~l~~tG~~~~ia~~l~~~~~~~~-- 76 (396)
T cd00625 3 LIRPEK---LPRAVVALLGAVLLVLLGVVSPKEALS-AIDWETILLLFGMMILSAALEETGLFDRLAAKLARASKGSR-- 76 (396)
T ss_pred EEEcCc---CCHHHHHHHHHHHHHHhcCCCHHHHHH-HcCHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHhCCCc--
Confidence 355555 788999999999999999999999875 69999999999999999999999999999999987655432
Q ss_pred hHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHcCCCH-HHHHHHHHHHHhhhhhhccccchhhHHhhcCCCCC
Q 008532 451 WPAAFGVLQASYFLIHYLFASQTGHVGALYSAFLAMHLAAGVPG-VLAALALAYNTNLFGAITHYSSGQAAVYYGAGYID 529 (562)
Q Consensus 451 ~~~~~~~l~~~~~~~~~~f~S~~a~~~il~Pi~~~la~~~Gv~p-~~~~l~l~~~~~~~~~~tP~~s~~n~i~~~~g~i~ 529 (562)
...+.++....+++ .+.||+++..+++|+..+++++.|.|| ..+.+.+.++++.++..+|+++++|.+..+.++++
T Consensus 77 -~~~~~~~~~~~~ls--~~~s~~~~~~il~Pi~~~~~~~~g~~~~~~l~~~~~~~a~~g~~~tp~gs~~n~i~~~~~~i~ 153 (396)
T cd00625 77 -RLLLLLMLLTAALS--AFFSNDATAVLLTPIVLALLRKLGLSPPVPLLLALAFAANIGGAATPIGNPPNLIIASLSGLG 153 (396)
T ss_pred -hHHHHHHHHHHHHH--HHHhchhhhhhhHHHHHHHHHHhCCCCCccHHHHHHHHHhccccccccCCCCceEEEeCCCCC
Confidence 22222233333333 478999999999999999999999999 88888888888867899999999999998888999
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 008532 530 LPDVFKMGFTMALVNAIIWGVTGTFWWK 557 (562)
Q Consensus 530 ~~d~~k~g~~~~li~~vi~~~v~~~~w~ 557 (562)
++|++|++.+..++..++...+.+.+++
T Consensus 154 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 181 (396)
T cd00625 154 FLDFLAFMAPPALGLLLLLLGLLYLLFR 181 (396)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999888888776665
|
These permeases have been shown to translocate sodium, arsenate, antimonite, sulfate and organic anions across biological membranes in all three kingdoms of life. A typical anion permease contains 8-13 transmembrane helices and can function either independently as a chemiosmotic transporter or as a channel-forming subunit of an ATP-driven anion pump. |
| >COG1055 ArsB Na+/H+ antiporter NhaD and related arsenite permeases [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.5e-14 Score=150.32 Aligned_cols=188 Identities=20% Similarity=0.201 Sum_probs=160.8
Q ss_pred HHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHhCCcChHHHhhc-cCChhHHHHHHHHHHHHHHHHHhCHHHHHHHHH
Q 008532 362 VGTMLLAVSLWIFGDALGIPSVVAAMIGLSILLLLGVLDWDDCLSE-KSAWDTLAWFAVLVGMAGQLTNLGIVTWMSDSV 440 (562)
Q Consensus 362 l~i~~~~i~l~i~~~~~gi~~~~vall~~~ll~~~gvl~~~~~~~~-~i~w~~l~l~~~~~~l~~~l~~tGi~~~ia~~l 440 (562)
+.++.+....|.. .+++.++.+..|+.++.+.|+.+++|+.+. .++|++++++.|++.+...++++|+.||.+.++
T Consensus 9 l~~~~l~~~~~~p---~~~~~~~~a~~Ga~l~l~~giv~~~d~~~~~~i~~~~i~~l~~mmiiv~~l~~~G~Fe~~a~~~ 85 (424)
T COG1055 9 LFIFTLVYVLIRP---RKLPRAWAALLGALLALFLGIVTPEDALVVIGIDWNVILLLLGMMIIVLLLDESGFFEWLAIKM 85 (424)
T ss_pred HHHHHHHHHhhhc---CcCchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 3344444444444 348899999999999999999999998753 589999999999999999999999999999999
Q ss_pred HHhhccCCCchHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhhhhhccccchhhH
Q 008532 441 AKCLQSFSLSWPAAFGVLQASYFLIHYLFASQTGHVGALYSAFLAMHLAAGVPGVLAALALAYNTNLFGAITHYSSGQAA 520 (562)
Q Consensus 441 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~f~S~~a~~~il~Pi~~~la~~~Gv~p~~~~l~l~~~~~~~~~~tP~~s~~n~ 520 (562)
.+...+.+. .....+..+..+++. |.+|++++.++.|+...++++.|.||.++.+...+.+|.++..||.|+++|.
T Consensus 86 v~~s~g~~~--~L~~~l~ll~a~~SA--~l~N~tt~LlltPivl~~~~~~~~~~~p~l~~~~f~aN~gg~~t~iGdp~ni 161 (424)
T COG1055 86 VKRSKGSGL--KLLLLLVLLGALLSA--FLDNDTTALLLTPIVLAVARALGVNPVPFLIAEVFIANIGGLATPVGDPPNI 161 (424)
T ss_pred HHHhcCCcc--hHHHHHHHHHHHHHH--HHcccceeehhhhHHHHHHHHcCCCccHHHHHHHHHHcccccccccCChHHH
Confidence 998765442 334444444555554 8999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCCCHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 008532 521 VYYGAGYIDLPDVFKMGFTMALVNAIIWGVTGTFWW 556 (562)
Q Consensus 521 i~~~~g~i~~~d~~k~g~~~~li~~vi~~~v~~~~w 556 (562)
+.....++++.|+.+..++.+++++++..++.+.++
T Consensus 162 ii~~~~gisF~~f~~~m~~p~l~~li~~~~vl~~~~ 197 (424)
T COG1055 162 IIASAAGISFNDFLANMFPPSLISLIATLVVLYLLF 197 (424)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999888899999999999999999999888887776
|
|
| >PF02040 ArsB: Arsenical pump membrane protein; InterPro: IPR000802 Arsenic is a toxic metalloid whose trivalent and pentavalent ions inhibit a variety of biochemical processes | Back alignment and domain information |
|---|
Probab=99.60 E-value=9.4e-14 Score=146.34 Aligned_cols=192 Identities=19% Similarity=0.227 Sum_probs=160.1
Q ss_pred HHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHhCCcChHHHhhc-cCChhHHHHHHHHHHHHHHHHHhCHHHHHHHH
Q 008532 361 MVGTMLLAVSLWIFGDALGIPSVVAAMIGLSILLLLGVLDWDDCLSE-KSAWDTLAWFAVLVGMAGQLTNLGIVTWMSDS 439 (562)
Q Consensus 361 ~l~i~~~~i~l~i~~~~~gi~~~~vall~~~ll~~~gvl~~~~~~~~-~i~w~~l~l~~~~~~l~~~l~~tGi~~~ia~~ 439 (562)
...+|++++.+.+.++ .|++.++.+..|+.+++..|+++++|+.+. +..|+..+++.|.+.++..+++.|+.||++.+
T Consensus 2 a~~if~~tl~~vi~rP-~~l~~~~~A~~GA~l~l~~G~v~~~d~~~v~~~~~~~~l~~i~~~vis~~ld~~G~F~~~A~~ 80 (423)
T PF02040_consen 2 AIAIFLLTLLLVIWRP-RGLPEAVWAVLGAALALALGVVPLSDALAVWGIVWDVTLFFIAMIVISELLDEAGFFDWLALH 80 (423)
T ss_pred hHHHHHHHHHHHhccC-CCCChHHHHHHHHHHHHHhCCcCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhChHHHHHHH
Confidence 3567888887777766 589999999999999999999999997432 46799999999999999999999999999999
Q ss_pred HHHhhccCCCchHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHcCCCH---HHHHHHHHHHHhhhhhhccccc
Q 008532 440 VAKCLQSFSLSWPAAFGVLQASYFLIHYLFASQTGHVGALYSAFLAMHLAAGVPG---VLAALALAYNTNLFGAITHYSS 516 (562)
Q Consensus 440 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~f~S~~a~~~il~Pi~~~la~~~Gv~p---~~~~l~l~~~~~~~~~~tP~~s 516 (562)
+.+.-++.+ .. .+..+.+.. ...+.|.||++++.+++|++..+++..|++| .++.+...+.+|..+..+|+|+
T Consensus 81 ~a~~a~g~~--~r-Lf~~v~ll~-~~vTaflsND~talilTPivla~~~~~~~~~~~~lp~l~a~~~iAntASl~LpvSN 156 (423)
T PF02040_consen 81 AARWARGSG--RR-LFLLVYLLG-AVVTAFLSNDATALILTPIVLALARRLGLNPKPPLPFLFACAFIANTASLLLPVSN 156 (423)
T ss_pred HHHhcCCCc--ch-HHHHHHHHH-HHHHHHHhccchhhhhHHHHHHHHHHcCCCcccchHHHHHHHHHhhhhhccccccC
Confidence 998765543 22 333222222 3344699999999999999999999999986 5788888888888999999999
Q ss_pred hhhHHhhcCCCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 008532 517 GQAAVYYGAGYIDLPDVFKMGFTMALVNAIIWGVTGTFWWK 557 (562)
Q Consensus 517 ~~n~i~~~~g~i~~~d~~k~g~~~~li~~vi~~~v~~~~w~ 557 (562)
+.|.+.++..++++.|+.+..++..++++++...+.+.|++
T Consensus 157 ltNLv~~~~~~~~f~~y~~~m~~P~l~ai~~t~~vl~~~fr 197 (423)
T PF02040_consen 157 LTNLVAADAFGISFLEYAAVMALPSLAAIAVTYLVLWLYFR 197 (423)
T ss_pred cHHHHHHHccCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998888777665554
|
Operons that encode arsenic resistance have been found in multicopy plasmids from both Gram-positive and Gram-negative bacteria []. The resistance mechanism is encoded from a single operon, which houses an anion pump. The pump has two polypeptide components: a catalytic subunit (the ArsA protein), which functions as an oxyanion-stimulated ATPase; and an arsenite export component (the ArsB protein), which is associated with the inner membrane []. The ArsA and ArsB proteins are thought to form a membrane complex that functions as an anion-translocating ATPase. The ArsB protein is distinguished by its overall hydrophobic character, in keeping with its role as a membrane-associated channel. Sequence analysis reveals the presence of 13 putative transmembrane (TM) regions.; GO: 0015105 arsenite transmembrane transporter activity, 0016021 integral to membrane |
| >TIGR00529 AF0261 converved hypothetical integral membrane protein | Back alignment and domain information |
|---|
Probab=99.58 E-value=4.8e-11 Score=125.21 Aligned_cols=364 Identities=10% Similarity=0.054 Sum_probs=206.1
Q ss_pred HHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhcCCChHHHH-----HhccchHHHHHHHHHHHHHHHHHh-CHHHHHHHH
Q 008532 126 LSIFLSTIAGLVLSPLPVGAWAFLGLTTSIVTRTLAFPTAF-----AAFTNEVIWLIVISFFFARGFVKT-GLGDRIATY 199 (562)
Q Consensus 126 l~i~~~~i~lw~~~~~p~~~~all~~~ll~l~gv~~~~~~~-----~~~~~~~i~li~~~~~la~al~~t-Gl~~ria~~ 199 (562)
+.+|...+++-...++|+++..+.+..++.+...++++|+. .+..++.+-++++...+...++|+ |..||+++.
T Consensus 6 ~~~~~~ii~li~~~K~~~~~all~~al~lgl~~G~~~~~i~~~i~~~g~~~~~i~lii~lg~l~g~l~~ssG~~~~ia~~ 85 (387)
T TIGR00529 6 LSLFTVIVVLIVFKKVNIGLLIFVGVMILALLVRLGLEGFLWTLSLADSFWSLIVTIFIIAFLSGMMEKSFGDLSKFSEG 85 (387)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 33444444444444799998888887777766678888876 455667777777766676799999 999999999
Q ss_pred HHHHhCCChhhHHHHHHHHHHHhhhcCCChhhhhhHhHHHHHHHHHHHcCCCCCCCCcchhhhHHHHHhHHhhhhhcccc
Q 008532 200 FVKWLGKSTLGLSYGLTFSEALIAPAMPSTTARAGGVFLPIIKSLSLSAGSKPGDSSSKKLGSYLIQSQFQSAGNSSALF 279 (562)
Q Consensus 200 i~~~~g~~~~~l~~~l~l~~~~ls~~~~s~~a~~~~i~~Pi~~~i~~~~g~~p~~~~~~~~~~~l~l~~~~~~~~~g~~t 279 (562)
+.+++|++.... ...+.+.+ |...+ + .++.|++.+++++.+.++. + .......+-...-...
T Consensus 86 l~~l~g~~~~~~--ap~liG~l-----Pv~~g-~-vilaPlv~~la~~~~~s~~-----~----~~~~~~~~~~v~h~~~ 147 (387)
T TIGR00529 86 MRTIFSKNSDSF--VPALIGLM-----PMPGG-A-LFSAPMVKNSLKEERINPE-----K----LTVKNYWFRHTWEFFW 147 (387)
T ss_pred HHHHhCcccHHH--HHHHHHHh-----hHHHH-H-HHHHHHHHHHHHHhCcCHH-----H----HHHHHHHHHHHHHhhc
Confidence 999997754232 33333332 33333 2 5789999999999987653 1 1111222222222223
Q ss_pred cccchhHHHHHHHHHHcCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCChhHHHHHHhhhcCCCCHHHH
Q 008532 280 LTAAAQNLLCLKLAEELGVIISSPWVSWFKAACVPALVALLATPLILYKLYPPEVKDTPDAPAMAAKKLKQLGPVTRNEW 359 (562)
Q Consensus 280 ~~g~~~n~i~~g~~~~~G~~i~~~~~~w~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~e~ 359 (562)
| .-|++++.. +..| .+ .++...+|+|.++...+..+++.. |+..++ .. + +.++. +.-..-.
T Consensus 148 P--p~Pgpi~aa--~~l~--~~--lg~~il~gl~i~i~~~i~G~~~~~---~~~~~~--~~----~-~~~~~-~~~~~l~ 208 (387)
T TIGR00529 148 P--IYPAVVLVS--ALSG--IH--PGKVSLTLFPVFAIAFFLGWFFFN---GKQLPC--LS----K-PRNLF-DSFFNLY 208 (387)
T ss_pred C--CCchHHHHH--HHhC--CC--HHHHHHHHHHHHHHHHHHHHHHHc---Cccccc--cc----c-ccccC-cccHHHH
Confidence 3 234555432 2235 45 779999999998887665554432 221111 00 0 00111 1111111
Q ss_pred HHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHH-HHHhCCcChH---HHhhccCChhHHHHHHHHHHHHHHHHHhCHHHH
Q 008532 360 IMVGTMLLAVSLWIFGDALGIPSVVAAMIGLSI-LLLLGVLDWD---DCLSEKSAWDTLAWFAVLVGMAGQLTNLGIVTW 435 (562)
Q Consensus 360 ~~l~i~~~~i~l~i~~~~~gi~~~~vall~~~l-l~~~gvl~~~---~~~~~~i~w~~l~l~~~~~~l~~~l~~tGi~~~ 435 (562)
..+.+.+.++ ... .+.. .+++...+ +...+..+.| |..++.+++.+++..+++..+++.++++|+.|.
T Consensus 209 PI~lil~~s~----~~~---~~~~-~al~a~~l~~~~~~~~~~~~~~~~~~~al~~~illii~agg~fk~vL~~sGi~~~ 280 (387)
T TIGR00529 209 PIIIVLGTSV----LIL---LDKL-SGWFALLLSTSIYNVFRRRYLLETLKRVFNKWIFLLLFAVMIYKVVIEHSGVGES 280 (387)
T ss_pred HHHHHHHHHH----HHh---cChH-HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHH
Confidence 1111111111 111 1221 12222221 1222222333 434567788889999999999999999999999
Q ss_pred HHHHHHHhhccCCCchHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhhhhhcccc
Q 008532 436 MSDSVAKCLQSFSLSWPAAFGVLQASYFLIHYLFASQTGHVGALYSAFLAMHLAAGVPGVLAALALAYNTNLFGAITHYS 515 (562)
Q Consensus 436 ia~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~f~S~~a~~~il~Pi~~~la~~~Gv~p~~~~l~l~~~~~~~~~~tP~~ 515 (562)
+++.+.+. +.+ ...+. .++.++....-....+.+.+..|+..+.. -|.++...+++.++++ -..+|..
T Consensus 281 l~~~~~~~----~ip-~~~l~--~lia~ilg~~tGa~it~agi~~Pll~~~~--~~~~~~~l~la~g~g~---~~~Shvn 348 (387)
T TIGR00529 281 IAAEFVSW----NLP-PWILL--ILLPLVSGISTGITQAYVGISLPLLMEFF--SSAKYAVLTYMFGYGG---VILSPVH 348 (387)
T ss_pred HHHHHHhC----CCh-HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhhcc--CchhHHHHHHHHHhhh---hccCccc
Confidence 99988764 221 11221 22222222222345556677778753211 3677777666555543 3456765
Q ss_pred chhhHHhhcCCCCCHHHHHHHhHHHHHHHHHH
Q 008532 516 SGQAAVYYGAGYIDLPDVFKMGFTMALVNAII 547 (562)
Q Consensus 516 s~~n~i~~~~g~i~~~d~~k~g~~~~li~~vi 547 (562)
.. -.+.-++-+.|.+|.+|.-.+..++..+.
T Consensus 349 d~-fwl~~eyf~~~~~~~~k~~~~~~~~~~~~ 379 (387)
T TIGR00529 349 LC-VVLSAEYFGVEVFKIYRKVLLPLVLTLIL 379 (387)
T ss_pred cc-hhHhHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 55 45555666789999999877776666654
|
This protein is predicted to have 10 transmembrane regions. Members of this family are found so far in the Archaea (Archaeoglobus fulgidus and Pyrococcus horikoshii) and in a bacterial thermophile, Thermotoga maritima. In Pyrococcus, the gene is located between nadA and nadB, two components of an enzyme involved in de novo synthesis of NAD. By PSI-BLAST, this family shows similarity (but not necessarily homology) to gluconate permease and other transport proteins. |
| >PRK09921 permease DsdX; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.2e-10 Score=124.14 Aligned_cols=376 Identities=13% Similarity=0.032 Sum_probs=193.0
Q ss_pred cCCChHHHHHHHHHHHHHhcCCChHHHH----Hhccc---hHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhCC-Chhh
Q 008532 139 SPLPVGAWAFLGLTTSIVTRTLAFPTAF----AAFTN---EVIWLIVISFFFARGFVKTGLGDRIATYFVKWLGK-STLG 210 (562)
Q Consensus 139 ~~~p~~~~all~~~ll~l~gv~~~~~~~----~~~~~---~~i~li~~~~~la~al~~tGl~~ria~~i~~~~g~-~~~~ 210 (562)
-++|+...-+++.....+...++++|.. +++++ .....+....++++.+|++|..+|+++.+.+. ++ +...
T Consensus 25 ~k~~~f~aLl~~ai~~gl~~g~~~~~~~~~i~~g~g~t~g~i~~ii~lGai~G~lle~SGaa~~ia~~i~~~-~~~~~~~ 103 (445)
T PRK09921 25 FKFHPFLALLLASFFVGAMMGMGPLEMVNAIESGIGGTLGFLAAVIGLGTILGKMMEVSGAAERIGLTLQRC-RWLSADV 103 (445)
T ss_pred HHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHH-hhhhHHH
Confidence 4477777777677766666667766542 24432 34457777888999999999999999997554 33 2222
Q ss_pred HHHHHHHHHHHhhhcCCChhhhhhHhHHHHHHHHHHHcCCCCCCCCcchhhhHHHHHhHHhhhhhcccccccchhHHHHH
Q 008532 211 LSYGLTFSEALIAPAMPSTTARAGGVFLPIIKSLSLSAGSKPGDSSSKKLGSYLIQSQFQSAGNSSALFLTAAAQNLLCL 290 (562)
Q Consensus 211 l~~~l~l~~~~ls~~~~s~~a~~~~i~~Pi~~~i~~~~g~~p~~~~~~~~~~~l~l~~~~~~~~~g~~t~~g~~~n~i~~ 290 (562)
......+++. ++.|++.. . .++.|++.+++|+.|.++. | +.+.+....... -. ...++| +++..
T Consensus 104 a~~~~gll~~-IpvF~~~~--~--vil~Pl~~~lak~~~~s~~-----~--~~~~~~~~~~~~--h~-~vPp~P-g~~~~ 167 (445)
T PRK09921 104 IMVLVGLICG-ITLFVEVG--V--VLLIPLAFSIAKKTNTSLL-----K--LAIPLCTALMAV--HC-VVPPHP-AALFV 167 (445)
T ss_pred HHHHHHHHHc-ccHHHHhH--H--HHHHHHHHHHHHHhCCCHH-----H--HHHHHHHHHHHh--Hh-cCCCCc-HHHHH
Confidence 2222222222 33333222 1 4889999999999876532 1 222222222211 11 222332 22222
Q ss_pred HHHHHcCCcccccHHHHHHHHHHHHHHHHHH-HHHHHHHhcCCCCCC-CCChhHHHHHHhhhcCCCCHHHHHHHHHHHHH
Q 008532 291 KLAEELGVIISSPWVSWFKAACVPALVALLA-TPLILYKLYPPEVKD-TPDAPAMAAKKLKQLGPVTRNEWIMVGTMLLA 368 (562)
Q Consensus 291 g~~~~~G~~i~~~~~~w~~~~~~~~li~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~t~~e~~~l~i~~~~ 368 (562)
++..| .+ .+....+|++.++....+ .+++..+..|+..++ .++..++.++ .+| +++. ..+..+...++-
T Consensus 168 --a~~lg--~~--lg~~~l~Gl~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~lP-~~~~s~~~illP 238 (445)
T PRK09921 168 --ANKLG--AD--IGSVIVYGLLVGLMASLVGGPLFLKFLGNRLPFKPVPTEFADLEV-RDE-KTLP-SLGATLFTVLLP 238 (445)
T ss_pred --HHHhC--CC--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCchhhhhcc-ccc-cCCC-CcHHHHHHHHHH
Confidence 22246 45 668889999988665444 444444443322111 1111011111 111 1111 112332222222
Q ss_pred HHHHHhc----CCCC-----------CChHHHHHHHHHHHHH--h--CC-cChHHHhhccCC------hhHHHHHHHHHH
Q 008532 369 VSLWIFG----DALG-----------IPSVVAAMIGLSILLL--L--GV-LDWDDCLSEKSA------WDTLAWFAVLVG 422 (562)
Q Consensus 369 i~l~i~~----~~~g-----------i~~~~vall~~~ll~~--~--gv-l~~~~~~~~~i~------w~~l~l~~~~~~ 422 (562)
+++.+.. .... +....+|++..+++.. . +. .++++ +++..+ -.+++..+++-+
T Consensus 239 i~LI~~~~~~~~~~~~~~~~~~~l~f~g~p~iALlig~l~a~~~l~~~~~~~~~~-~~~~~~~al~~~~~illi~GaGGa 317 (445)
T PRK09921 239 IGLMLVKTVAELNMAKEGTLYTLLEFIGNPITAMFIAVFVAYYILGIRQHMGMGT-LLTHTENGFGSIANILLIIGAGGA 317 (445)
T ss_pred HHHHHHHHHHHhccCccchHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCcHHH-HHHHHHHHHHHHHHHHHHHhccHh
Confidence 2222111 1000 1222345444433322 2 21 22223 222121 346667777789
Q ss_pred HHHHHHHhCHHHHHHHHHHHhhccCCCchHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHH-HcCCCHHHHHHHH
Q 008532 423 MAGQLTNLGIVTWMSDSVAKCLQSFSLSWPAAFGVLQASYFLIHYLFASQTGHVGALYSAFLAMHL-AAGVPGVLAALAL 501 (562)
Q Consensus 423 l~~~l~~tGi~~~ia~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~f~S~~a~~~il~Pi~~~la~-~~Gv~p~~~~l~l 501 (562)
++++++++|+.|.+++.+.+. +.+ +.. .-.++..+.+..-.|.+.....-..++.++.. ..|+||..+.+
T Consensus 318 fg~Vl~~sg~~~~i~~~l~~~----~~~-pl~--~~~liaa~l~~a~GSaTva~~taa~i~~p~l~~~~g~~p~~lvl-- 388 (445)
T PRK09921 318 FNAILKSSGLADTLAVILSNM----HMH-PIL--LAWLVALILHAAVGSATVAMMGATAIVAPMLPLYPDISPEIIAI-- 388 (445)
T ss_pred HHHHHHhCCHHHHHHHHHHhC----CCC-HHH--HHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhccCCCCHHHHHH--
Confidence 999999999999999998764 222 222 22333445555667887776633333333332 23999998754
Q ss_pred HHHHhhhhhhccccchhhHHhhcCCCCCHHHHHHHhHHHHHHHHHHHHHH
Q 008532 502 AYNTNLFGAITHYSSGQAAVYYGAGYIDLPDVFKMGFTMALVNAIIWGVT 551 (562)
Q Consensus 502 ~~~~~~~~~~tP~~s~~n~i~~~~g~i~~~d~~k~g~~~~li~~vi~~~v 551 (562)
+++++ .-...+...+.--+.....+.+.||-+|.-.+...+.-++...+
T Consensus 389 ai~aG-sl~~shvNDs~fW~~~~~~glt~k~t~k~~t~~~~i~~~~~~~~ 437 (445)
T PRK09921 389 AIGSG-AIGCTIVTDSLFWLVKQYCGATLNETFKYYTTATFIASVVALAG 437 (445)
T ss_pred HHhcC-CcccccCCCCccHHHHHHhCCCHHHHhHhhHHHHHHHHHHHHHH
Confidence 44443 23334544333335556677888888888666666555444433
|
|
| >PLN00137 NHAD transporter family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=4.2e-13 Score=142.68 Aligned_cols=188 Identities=11% Similarity=0.012 Sum_probs=148.2
Q ss_pred CHHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHhCCc---ChHHHhhccCC------hhHHHHHHHHHHHHH
Q 008532 355 TRNEWIMVGTMLLAVSLWIFGDALGIPSVVAAMIGLSILLLLGVL---DWDDCLSEKSA------WDTLAWFAVLVGMAG 425 (562)
Q Consensus 355 t~~e~~~l~i~~~~i~l~i~~~~~gi~~~~vall~~~ll~~~gvl---~~~~~~~~~i~------w~~l~l~~~~~~l~~ 425 (562)
++++...+.+|+++..+.++++..+++.+..+++++.++.+.+.+ +.+|.. +.++ |++++++.|++.+.+
T Consensus 2 ~~~~~~~~~if~~~y~~i~~e~~~~i~~~~~al~~a~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~L~g~m~iv~ 80 (424)
T PLN00137 2 ANQGLAMALVFGAGYAGIIFEESLAFNKSGVALLMAVSLWVIRAIGAPSLEIVT-LELRHALAEVSEIVFFLLGAMTIVE 80 (424)
T ss_pred CcchhHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHhccchHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788899999999999999777789999999999988777666 777765 4688 999999999999999
Q ss_pred HHHHhCHHHHHHHHHHHhhccCCCchHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHcCCCHHHH-HHHHHHH
Q 008532 426 QLTNLGIVTWMSDSVAKCLQSFSLSWPAAFGVLQASYFLIHYLFASQTGHVGALYSAFLAMHLAAGVPGVLA-ALALAYN 504 (562)
Q Consensus 426 ~l~~tGi~~~ia~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~f~S~~a~~~il~Pi~~~la~~~Gv~p~~~-~l~l~~~ 504 (562)
.++++|+.|++++.+.+. + .+.....+..+.++++. +.+|++++.++.|+...+++.. +|... .+..+++
T Consensus 81 ~l~~~g~f~~~a~~~~~~-~----~~~l~~~~~~~~~~lS~--~l~N~tt~l~~~p~~~~~~~~~--~~~~~~~~~~~~a 151 (424)
T PLN00137 81 IVDAHQGFKLVTDSITTR-S----PRTLLWVVGFITFFLSS--ILDNLTTTIVMVSLLRKLVPPS--EYRKLLGAVVVVA 151 (424)
T ss_pred HHHHcCcHHHHHHHHHhc-C----HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhcc--cchHHHHHHHHHh
Confidence 999999999999999885 1 12334444444444554 8999999999999999888764 55555 4567899
Q ss_pred HhhhhhhccccchhhHHhhcCCCCCHHHHHHHhHHHHHHHHHHHHHHH
Q 008532 505 TNLFGAITHYSSGQAAVYYGAGYIDLPDVFKMGFTMALVNAIIWGVTG 552 (562)
Q Consensus 505 ~~~~~~~tP~~s~~n~i~~~~g~i~~~d~~k~g~~~~li~~vi~~~v~ 552 (562)
+|.++..||.|+|||.+..+.+++++.|++....+..+++.++...+.
T Consensus 152 aNiGg~~TpiGnp~NllI~~~~~lsf~~f~~~l~~P~li~~lv~~~i~ 199 (424)
T PLN00137 152 ANAGGAWTPIGDVTTTMLWIHGQISTLPTMQGLFLPSAVSLAVPLALM 199 (424)
T ss_pred ccccceeccCCCcCeeeehccCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988888889988866554555554444444333
|
|
| >PF03600 CitMHS: Citrate transporter; InterPro: IPR004680 Characterised proteins in this entry belong mostly to the divalent anion symporter family, which is found in bacteria, archaea and eukaryotes | Back alignment and domain information |
|---|
Probab=99.49 E-value=1e-12 Score=137.42 Aligned_cols=168 Identities=20% Similarity=0.348 Sum_probs=139.7
Q ss_pred CCChHHHHHHHHHHHHHh-----CCcChHHHhhccCChhHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHhhccCCCchHH
Q 008532 379 GIPSVVAAMIGLSILLLL-----GVLDWDDCLSEKSAWDTLAWFAVLVGMAGQLTNLGIVTWMSDSVAKCLQSFSLSWPA 453 (562)
Q Consensus 379 gi~~~~vall~~~ll~~~-----gvl~~~~~~~~~i~w~~l~l~~~~~~l~~~l~~tGi~~~ia~~l~~~~~~~~~~~~~ 453 (562)
+.+....+.++.+++... +..+.+|.. +.++|++++++.|.+. +++++++|..|++++.+.+..++.+ +..
T Consensus 17 ~~~~~~~~~~~a~~~~l~g~~~~~~~~~~~~~-~~~~~~~l~ll~g~~~-~~~l~~tG~~~~ia~~i~~~~~~~~--~~l 92 (351)
T PF03600_consen 17 KIPVVAAALLGALLVALFGFPGFGVISPEEAF-SFIDWNTLILLFGMMI-GAALEETGVFDWIARKIVRKSGGKP--WRL 92 (351)
T ss_pred hhhHHHHHHHHHHHHHHHHhccccccCHHHHH-HHcchhHHHHHHHHHH-HHHHHHcCChHHHHHHHHhccCCCH--HHH
Confidence 367777777777777777 788999987 4899999999999999 9999999999999999998876542 223
Q ss_pred HHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhhhhhccccchhhHHhhcCCCCCH--H
Q 008532 454 AFGVLQASYFLIHYLFASQTGHVGALYSAFLAMHLAAGVPGVLAALALAYNTNLFGAITHYSSGQAAVYYGAGYIDL--P 531 (562)
Q Consensus 454 ~~~~l~~~~~~~~~~f~S~~a~~~il~Pi~~~la~~~Gv~p~~~~l~l~~~~~~~~~~tP~~s~~n~i~~~~g~i~~--~ 531 (562)
...+..+..+++ .+.+|++++.++.|+..++++..|++|..+.+.+.++++.++..||.|+++|.+..+..++++ .
T Consensus 93 ~~~~~~~~~~lS--~~~~N~~~v~~~~Pi~~~~~~~~~i~~~~~l~~l~~~a~~gg~~t~iG~p~nl~i~~~~~~~~~~~ 170 (351)
T PF03600_consen 93 LLLLMLVTALLS--AFLDNTTVVLIMIPIVLSLARKLGIPPSPLLMPLAFAANIGGMLTPIGNPTNLIIANASGLPFFGF 170 (351)
T ss_pred HHHHHHHHHHHH--HhhhcchHHHhhHHHHHHHHHHcCCChHHHHHHHHHHhccccccCcCCCcchhhhhhhcccccchh
Confidence 333333344344 489999999999999999999999999999999999999888899999999988877777888 9
Q ss_pred HHHHHhHHHHHHHHHHHHHHH
Q 008532 532 DVFKMGFTMALVNAIIWGVTG 552 (562)
Q Consensus 532 d~~k~g~~~~li~~vi~~~v~ 552 (562)
|+++.++|..++++++.....
T Consensus 171 ~~~~~~~p~~i~~~~~~~~~~ 191 (351)
T PF03600_consen 171 DFFALGLPAVIVGLLVLIFIL 191 (351)
T ss_pred hhHhhhHHHHHHHHHHHHHHH
Confidence 999999999988887766443
|
Substrates shown to be transported by these proteins include citrate and phosphate []. This entry also contains the melanocyte-specific transporter protein P, mutation of which leads to albinism []. Another protein in this entry, SAC1, has been shown to regulate the sulphur deprivation response in Chlamydomonas by inducing cysteine biosynthesis, though its precise role in this induction is not known [].; GO: 0015137 citrate transmembrane transporter activity, 0015746 citrate transport, 0055085 transmembrane transport, 0016021 integral to membrane |
| >PRK09547 nhaB sodium/proton antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.7e-12 Score=137.74 Aligned_cols=186 Identities=13% Similarity=0.081 Sum_probs=155.8
Q ss_pred HHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhc---CCChHHHHHh-----ccchHHHHHHHHHHHHHHHHHhCHHHHHH
Q 008532 126 LSIFLSTIAGLVLSPLPVGAWAFLGLTTSIVTR---TLAFPTAFAA-----FTNEVIWLIVISFFFARGFVKTGLGDRIA 197 (562)
Q Consensus 126 l~i~~~~i~lw~~~~~p~~~~all~~~ll~l~g---v~~~~~~~~~-----~~~~~i~li~~~~~la~al~~tGl~~ria 197 (562)
+.++. .++... ++...+++++..++++.+ ..+.|+++++ ..|+++ +.+.|++..+++++|+.+.++
T Consensus 307 l~~~~-li~~f~---l~~a~VaLiga~vill~~~~~~~~~e~~l~~~~~~~v~w~tL--f~glFivV~~i~~~gl~~~i~ 380 (513)
T PRK09547 307 LIGVW-LIVALA---LHLAEVGLIGLSVIILATAFTGVTDEHAIGKAFEEALPFTAL--LTVFFAVVAVIIDQHLFAPII 380 (513)
T ss_pred HHHHH-HHHHHH---HhHHHHHHHHHHHHHHhhcccCCCHHHHHhhCcCCCCChHHH--HHHHHHHHHHHHHhhhHHHHH
Confidence 34444 444444 788999999998888776 5889999998 899998 999999999999999999999
Q ss_pred HHHHHHhCCChhhHHHHHHHHHHHhhhcCCChhhhhhHhHHHHHHHHHHHcCCCCCCCCcchhhhHHHHHhHHhhhhhcc
Q 008532 198 TYFVKWLGKSTLGLSYGLTFSEALIAPAMPSTTARAGGVFLPIIKSLSLSAGSKPGDSSSKKLGSYLIQSQFQSAGNSSA 277 (562)
Q Consensus 198 ~~i~~~~g~~~~~l~~~l~l~~~~ls~~~~s~~a~~~~i~~Pi~~~i~~~~g~~p~~~~~~~~~~~l~l~~~~~~~~~g~ 277 (562)
+++.+..+++. ...+...+.++|.+++|.... .++.|++.... +.|..+.+ + ...+..++..++|++|.
T Consensus 381 ~~~~~~~~~~~---~~~~~~~sgllSaiiDNVp~~--~~~ip~v~~~~-~~g~~~~~--~---~~~L~~ALa~Ga~Lggn 449 (513)
T PRK09547 381 QFVLQASEHAQ---LSLFYIANGLLSSISDNVFVG--TVYINEAKAAL-ESGAISRK--Q---FELLAVAINTGTNLPSV 449 (513)
T ss_pred HHHHHhcCCCh---HHHHHHHHHHHHHhhchHHHH--HHHHHHHHHHH-hcCCCccc--c---chHHHHHHHHhcccchh
Confidence 99999988765 667788899999999999875 58999999988 66663211 0 02477888999999999
Q ss_pred cccccchhHHHHH-HHHHHcCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 008532 278 LFLTAAAQNLLCL-KLAEELGVIISSPWVSWFKAACVPALVALLATPLILYKLYP 331 (562)
Q Consensus 278 ~t~~g~~~n~i~~-g~~~~~G~~i~~~~~~w~~~~~~~~li~~~~~~~~~~~~~~ 331 (562)
+||.|...|++.. +.+++ |++++ |+||.++|+|.+++..++..++......
T Consensus 450 ~T~iGasAnlv~~~~~~~~-g~~is--f~~~~k~glP~tlv~~~v~~~~v~~~~~ 501 (513)
T PRK09547 450 ATPNGQAAFLFLLTSALAP-LIRLS--YGRMVWMALPYTIVLTLVGLLAVEFTLA 501 (513)
T ss_pred hhHHHHHHHHHHHHHHHhC-CCccc--HHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999 88888 99999 9999999999999998888877766544
|
|
| >KOG2639 consensus Sodium sulfate symporter and related arsenite permeases [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.3e-12 Score=133.47 Aligned_cols=173 Identities=17% Similarity=0.184 Sum_probs=139.4
Q ss_pred CChHHHHHHHHHH-HHHhcCCChHHHHHhccchHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHh---CCChh--hHHHH
Q 008532 141 LPVGAWAFLGLTT-SIVTRTLAFPTAFAAFTNEVIWLIVISFFFARGFVKTGLGDRIATYFVKWL---GKSTL--GLSYG 214 (562)
Q Consensus 141 ~p~~~~all~~~l-l~l~gv~~~~~~~~~~~~~~i~li~~~~~la~al~~tGl~~ria~~i~~~~---g~~~~--~l~~~ 214 (562)
++.+|+|+++..+ +++...-|.+..+....|++..++.++|++..+++|.|+.+|+.+...... +.+.. ..++.
T Consensus 495 l~LgW~AIlgA~llLIl~d~~D~e~il~rVews~LLFfaalFI~~e~v~~lGli~~l~dlte~vil~v~e~~~~~vAi~i 574 (685)
T KOG2639|consen 495 LSLGWTAILGAILLLILADIKDIEAILHRVEWSTLLFFAALFILMEAVDKLGLIEWLGDLTEPVILSVGESYRLMVAIVI 574 (685)
T ss_pred CCccHHHHHHHHHHHHHhchhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhhCHHHHHHHhhhHHhhhcchhhhhHHHHHH
Confidence 6789999996554 555666667777889999999999999999999999999999999887654 33332 23344
Q ss_pred HHHHHHHhhhcCCChhhhhhHhHHHHHHHHHHH--cCCCCCCCCcchhhhHHHHHhHHhhhhhcccccccchhHHHHHHH
Q 008532 215 LTFSEALIAPAMPSTTARAGGVFLPIIKSLSLS--AGSKPGDSSSKKLGSYLIQSQFQSAGNSSALFLTAAAQNLLCLKL 292 (562)
Q Consensus 215 l~l~~~~ls~~~~s~~a~~~~i~~Pi~~~i~~~--~g~~p~~~~~~~~~~~l~l~~~~~~~~~g~~t~~g~~~n~i~~g~ 292 (562)
+...+++.|.|+.|...+ .+|.++..++.+. .|.+- ..++.+..++++.||.+|++|+..|.++++.
T Consensus 575 ilw~SAlasafidNipvt--~~mVkl~~~lv~~~~~glpl---------~pliWaL~~ga~~gGNgTLiGasANvv~A~i 643 (685)
T KOG2639|consen 575 ILWVSALASAFIDNIPVT--AIMVKLLTSLVANSAVGLPL---------QPLIWALALGACLGGNGTLIGASANVVAAGI 643 (685)
T ss_pred HHHHHHHHHHHhccCcch--HHHHHHHHHHhhccccCCCc---------chHHHHHHhhhhhcCCceeechhhHHHHHHH
Confidence 566889999999999865 5888888776553 33322 2467788889999999999999999999999
Q ss_pred HHHcCCcccccHHHHHHHHHHHHHHHHHHHHHHH
Q 008532 293 AEELGVIISSPWVSWFKAACVPALVALLATPLIL 326 (562)
Q Consensus 293 ~~~~G~~i~~~~~~w~~~~~~~~li~~~~~~~~~ 326 (562)
+++.||.++ |.++|+.|+|..+....+...+.
T Consensus 644 AeqHGYklt--F~~fF~~GfPmml~si~i~t~yL 675 (685)
T KOG2639|consen 644 AEQHGYKLT--FTQFFKVGFPMMLGSITIGTVYL 675 (685)
T ss_pred HHHcCceEE--ehhHHHhcccHHHHHHHHHHHHH
Confidence 999999999 99999999999988776665543
|
|
| >TIGR00775 NhaD Na+/H+ antiporter, NhaD family | Back alignment and domain information |
|---|
Probab=99.45 E-value=4e-12 Score=135.19 Aligned_cols=185 Identities=12% Similarity=0.060 Sum_probs=147.3
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHhCCcChHHH---hh--ccCC-hhHHHHHHHHHHHHHHHHHhC
Q 008532 358 EWIMVGTMLLAVSLWIFGDALGIPSVVAAMIGLSILLLLGVLDWDDC---LS--EKSA-WDTLAWFAVLVGMAGQLTNLG 431 (562)
Q Consensus 358 e~~~l~i~~~~i~l~i~~~~~gi~~~~vall~~~ll~~~gvl~~~~~---~~--~~i~-w~~l~l~~~~~~l~~~l~~tG 431 (562)
+...+.+|+++..+.++++..+++-+.++++++.++.+.|..+.+|. .. +.+| |++++++.+++.+.+.++++|
T Consensus 3 ~~~~~~if~~~y~~i~~e~~~~~~r~~~al~ga~~~~~~~~~~~~~~~~~~~~~~~~d~~~ti~~LfgmMiiv~~l~~~g 82 (420)
T TIGR00775 3 KFQLCLLFLFGYLTIVFEHIVRVNKSAIWLAMGGLMWLVCFSHIPDVDHAALEEEIADMAQVIFFLFVAMAIVELIDAHK 82 (420)
T ss_pred HHHHHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHCC
Confidence 34567788888999999977778999999999999999998887775 32 3578 999999999999999999999
Q ss_pred HHHHHHHHHHHhhccCCCchHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHcCCCHHHHHHH--HHHHHhhhh
Q 008532 432 IVTWMSDSVAKCLQSFSLSWPAAFGVLQASYFLIHYLFASQTGHVGALYSAFLAMHLAAGVPGVLAALA--LAYNTNLFG 509 (562)
Q Consensus 432 i~~~ia~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~f~S~~a~~~il~Pi~~~la~~~Gv~p~~~~l~--l~~~~~~~~ 509 (562)
..|+++..+.+... ......+..+.++++. |.+|++++.++.|+...+++ .+|....+. .++++|.++
T Consensus 83 ~f~~la~~l~~~s~-----r~Ll~~l~l~t~~lSa--~LdN~tt~ll~~Pv~l~i~~---~~~~~~ll~~~i~~AANiGG 152 (420)
T TIGR00775 83 GFSALVAWCVGKSR-----KKLLWLLGFLSFFLSA--ALDNLTSIIIIISILKRLVK---AREDRLLLGAICVIAVNAGG 152 (420)
T ss_pred cHHHHHHHHHHHhH-----HHHHHHHHHHHHHHHH--HHhhHHHHHHHHHHHHHHhc---cCCccchHHhHHHHhccccc
Confidence 99999998766422 2334444445555554 89999999999999999986 555544454 789999999
Q ss_pred hhccccchhhHHhhcCCCCCHHHHHHHhHHHHHHHHHHHHHHH
Q 008532 510 AITHYSSGQAAVYYGAGYIDLPDVFKMGFTMALVNAIIWGVTG 552 (562)
Q Consensus 510 ~~tP~~s~~n~i~~~~g~i~~~d~~k~g~~~~li~~vi~~~v~ 552 (562)
..||.|+|||.+..+.+++++.|++....+.+++++++...+.
T Consensus 153 ~~TpIGdP~Ni~i~~~~~i~f~~f~~~l~~p~li~l~v~~~il 195 (420)
T TIGR00775 153 AWTPLGDVTTTMLWINGKIRFSGIIMPLFVPSLVCVVVAGFCG 195 (420)
T ss_pred ceeeCCCcchhHhHhcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988889999777776666666655544443
|
These proteins are members of the NhaD Na+:H+ Antiporter (NhaD) Family (TC 2.A.62). A single member of the NhaD family has been characterized. This protein is the NhaD protein of Vibrio parahaemolyticus which has 12 GES predicted transmembrane regions. It has been shown to catalyze Na+/H+ antiport, but Li+ can also be a substrate. |
| >PF03806 ABG_transport: AbgT putative transporter family; InterPro: IPR004697 The p-aminobenzoyl-glutamate transporter family includes two putative transporters, the AbgT protein of Escherichia coli and MtrF of Neisseria gonorrhoeae | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.6e-09 Score=112.09 Aligned_cols=354 Identities=15% Similarity=0.169 Sum_probs=204.1
Q ss_pred HHHHHhCHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhhhcCCChhhhhhHhHHHHHHHHHHHcCCCCCCCCcchhhhHH
Q 008532 185 RGFVKTGLGDRIATYFVKWLGKSTLGLSYGLTFSEALIAPAMPSTTARAGGVFLPIIKSLSLSAGSKPGDSSSKKLGSYL 264 (562)
Q Consensus 185 ~al~~tGl~~ria~~i~~~~g~~~~~l~~~l~l~~~~ls~~~~s~~a~~~~i~~Pi~~~i~~~~g~~p~~~~~~~~~~~l 264 (562)
..-||+|+.+-+-++..++..++ .+...+.++ .+.+-.. ++++. .++.|+.--+.++.|.+|- .
T Consensus 92 gvAE~sGll~a~~r~~~~~~p~~--~vt~~v~f~-Gi~snia-sDAg~--Vvl~PL~a~iF~~~GRhPl----------a 155 (502)
T PF03806_consen 92 GVAEKSGLLSALMRKLVLKAPPR--LVTPAVVFV-GIMSNIA-SDAGY--VVLPPLAAMIFAAVGRHPL----------A 155 (502)
T ss_pred HHHHHhchHHHHHHHHhccCCcc--hhhHHHHHH-HHHhccc-cccee--EeHHhhHHHHHHHcCCChH----------H
Confidence 45699999999888877665433 333344433 3444443 34444 5889999999999998773 1
Q ss_pred HHHhHHhhhhhc-ccccccchhHHHHHHHHHH-c-----CCcccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Q 008532 265 IQSQFQSAGNSS-ALFLTAAAQNLLCLKLAEE-L-----GVIISSPWVSWFKAACVPALVALLATPLILYKLYPPEVKDT 337 (562)
Q Consensus 265 ~l~~~~~~~~~g-~~t~~g~~~n~i~~g~~~~-~-----G~~i~~~~~~w~~~~~~~~li~~~~~~~~~~~~~~~~~~~~ 337 (562)
=+..++++..+| .+.+.-++.-.+..|+-++ + +++++ +...|+-. +.-+++...+..++..|+-.|+..+.
T Consensus 156 Gi~~afa~vs~GfsAnl~i~~~D~ll~giT~~Aa~~idp~~~v~-p~~N~yF~-~aSt~~l~~v~~~vt~kivePrl~~~ 233 (502)
T PF03806_consen 156 GIAAAFAGVSGGFSANLLIGSTDALLAGITTSAAQIIDPSYTVN-PLMNYYFM-IASTFVLTIVGTWVTEKIVEPRLGKY 233 (502)
T ss_pred HHHHHHHHHhccccceeeccchhHHHHHhHHHHHHhcCCCceec-hHHHHHHH-HHHHHHHHHHHHHHhhhhhccccccc
Confidence 122333333222 2223333455666676555 1 34443 34455333 23344444455555555544443222
Q ss_pred CChhHHHHHHhhhcCCCCHHHHHHHH-------HHHHHHHHHHhcC-------CCC--CCh----HHHHHHHHHHHH---
Q 008532 338 PDAPAMAAKKLKQLGPVTRNEWIMVG-------TMLLAVSLWIFGD-------ALG--IPS----VVAAMIGLSILL--- 394 (562)
Q Consensus 338 ~~~~~~~~~~~~~~g~~t~~e~~~l~-------i~~~~i~l~i~~~-------~~g--i~~----~~vall~~~ll~--- 394 (562)
.+..+. ++..++..++|++|++.+- +++..+++....+ ..| .+. ..+.++....+.
T Consensus 234 ~~~~~~-~~~~~~~~~Lt~~EkkgLr~Agi~~l~~lall~ll~iP~~a~LR~~~tG~l~~SPf~~gIIpiI~l~F~i~Gi 312 (502)
T PF03806_consen 234 DGDADD-DEIEEASSSLTPREKKGLRWAGIALLAFLALLLLLLIPENAPLRSPETGSLFPSPFMKGIIPIIFLFFLIPGI 312 (502)
T ss_pred cccccc-cccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHccCCccccCCCCCcccCChHHHhHHHHHHHHHHHHHH
Confidence 111111 1111122347888887542 2222222222222 111 111 122222222111
Q ss_pred HhC-----CcChHHHhhccCC--------hhHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHhhccCCCchHHHHHHHHHH
Q 008532 395 LLG-----VLDWDDCLSEKSA--------WDTLAWFAVLVGMAGQLTNLGIVTWMSDSVAKCLQSFSLSWPAAFGVLQAS 461 (562)
Q Consensus 395 ~~g-----vl~~~~~~~~~i~--------w~~l~l~~~~~~l~~~l~~tGi~~~ia~~l~~~~~~~~~~~~~~~~~l~~~ 461 (562)
..| +-+.+|+.+ .+. +-++.++++- +-..++.|++.+.++-.-.+.+++.+.+....++..++.
T Consensus 313 vYG~~sG~iks~~Dv~~-~M~~~m~~m~~yiVL~F~aaQ--Fia~F~~Snlg~i~Av~GA~~L~~~~~~~~~l~i~fill 389 (502)
T PF03806_consen 313 VYGIASGTIKSDKDVVK-MMSKGMKSMAPYIVLAFFAAQ--FIAYFNWSNLGTILAVKGAEFLKSLGLPGIPLIIGFILL 389 (502)
T ss_pred HHhhhhceecCHHHHHH-HHHHHHHHhHHHHHHHHHHHH--HHHHHhhcchHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 122 346677653 222 2233333333 336789999999999888888887765443344444445
Q ss_pred HHHHHHHhchhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhhhhhccccchhh-HHhhcC---CCCCHHHHHHHh
Q 008532 462 YFLIHYLFASQTGHVGALYSAFLAMHLAAGVPGVLAALALAYNTNLFGAITHYSSGQA-AVYYGA---GYIDLPDVFKMG 537 (562)
Q Consensus 462 ~~~~~~~f~S~~a~~~il~Pi~~~la~~~Gv~p~~~~l~l~~~~~~~~~~tP~~s~~n-~i~~~~---g~i~~~d~~k~g 537 (562)
..++..++.|.++--.++.|++.|+-..+|++|...-.+.-++.+....+||...--- .+.+.+ .+....+.+...
T Consensus 390 ~a~iNLfi~S~SaKWailAPifVPM~m~lg~sP~~tQ~aYRigDS~TN~ItPl~~yf~lil~~~qkY~k~~giGTlis~m 469 (502)
T PF03806_consen 390 TAFINLFIGSASAKWAILAPIFVPMFMLLGYSPALTQAAYRIGDSSTNIITPLMPYFPLILGFAQKYDKKAGIGTLISLM 469 (502)
T ss_pred HHHHHHhhhcchhhHHHHHhHHHHHHHHcCCCHHHHHHHHHhccccccccCccHHHHHHHHHHHHHhCcCccHHHHHHHH
Confidence 5566777899999999999999999999999999988888888877777788643222 222332 346789999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Q 008532 538 FTMALVNAIIWGVTGTFWWKFLGL 561 (562)
Q Consensus 538 ~~~~li~~vi~~~v~~~~w~~lGl 561 (562)
+|+++...+.+.+....||- +|+
T Consensus 470 lPysi~~lv~w~~ll~~W~~-lgl 492 (502)
T PF03806_consen 470 LPYSIAFLVVWTLLLIVWYL-LGL 492 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHH-hCC
Confidence 99999999998888766664 454
|
AbgT expression is apparently cryptic in wild type cells, but when present on a high copy number plasmid, or when expressed at higher levels due to mutation, it allows utilization of p-aminobenzoyl-glutamate as a source of p-aminobenzoate for p-aminobenzoate auxotrophs []. p-Aminobenzoate is a constituent of, and a precursor for, the biosynthesis of folic acid. It is not currently known if AbgT is naturally involved in transporting p-aminobenzoyl-glutamate, or if it only becomes involved when under altered regulation. MtrF is an inner membrane protein which, together with the MtrCDE efflux pump, is required for high-level resistance to hydrophobic antimicrobial agents in N. gonorrhoeae []. Its role in this process is not known, but it has been suggested that it may be a component of the efflux pump which is dispensible for basal activity, but required for high-level activity []. |
| >TIGR00931 antiport_nhaC Na+/H+ antiporter NhaC | Back alignment and domain information |
|---|
Probab=99.34 E-value=5.6e-08 Score=104.29 Aligned_cols=354 Identities=11% Similarity=0.056 Sum_probs=206.5
Q ss_pred hcCCChHHHHH----hccc--hHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhhhcCCChh
Q 008532 157 TRTLAFPTAFA----AFTN--EVIWLIVISFFFARGFVKTGLGDRIATYFVKWLGKSTLGLSYGLTFSEALIAPAMPSTT 230 (562)
Q Consensus 157 ~gv~~~~~~~~----~~~~--~~i~li~~~~~la~al~~tGl~~ria~~i~~~~g~~~~~l~~~l~l~~~~ls~~~~s~~ 230 (562)
....+++|..+ ++.+ +.+..++..-.+...+..+|..+-+.++-.+.. +|..+....++++.+++...++..
T Consensus 47 ~~~~~~~~~~~~~~~g~~~~~~~i~il~~~G~~~~~~~~~g~i~~l~~~g~~~i--~p~~~~~~~Fl~~~~~s~~~Gss~ 124 (454)
T TIGR00931 47 YLGVGYNDLESAIIDGIKIGIKAILILALVGILIGTWIMGGTVPTLIYYGLSII--SPEWFAVSTLLICMIVSSFTGTSW 124 (454)
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHhhc--CHHHHHHHHHHHHHHHHHHhccHH
Confidence 33467776544 3322 333333333455678899999999987666654 577888899999999999999888
Q ss_pred hhhhHhHHHHHHHHHHHcCCCCCCCCcchhhhHHHHHhHHhhhhhcccccccchhHHHHHHHHHHcCCcccccHHHHHHH
Q 008532 231 ARAGGVFLPIIKSLSLSAGSKPGDSSSKKLGSYLIQSQFQSAGNSSALFLTAAAQNLLCLKLAEELGVIISSPWVSWFKA 310 (562)
Q Consensus 231 a~~~~i~~Pi~~~i~~~~g~~p~~~~~~~~~~~l~l~~~~~~~~~g~~t~~g~~~n~i~~g~~~~~G~~i~~~~~~w~~~ 310 (562)
.+. ..+.|++.+++..+|.+|. ...-++..++..|--..|.++.+|..+.. .| .+ ..|..+.
T Consensus 125 gt~-~~~g~~l~~i~~~~g~~~~---------~~agai~sGa~fGD~~sP~Sdtt~l~a~~----~~--~~--~~~~v~~ 186 (454)
T TIGR00931 125 GTV-GTIGVAMMGIGTGLGIDLA---------IAAGAVVCGAYFGDKLSPLSDTTNFASGI----VG--VD--LFDHIRH 186 (454)
T ss_pred HHH-HHHHHHHHHHHHHcCCCHH---------HHHHHHHHHHHHcCCCCCCCcHHHHHHHH----cC--CC--HHHHHHH
Confidence 877 5899999999999998752 22222333445566677888776654432 25 34 5577777
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCC--ChhHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHhcCCCCCChHHHHH-
Q 008532 311 ACVPALVALLATPLILYKLYPPEVKDTP--DAPAMAAKKLKQLGPVTRNEWIMVGTMLLAVSLWIFGDALGIPSVVAAM- 387 (562)
Q Consensus 311 ~~~~~li~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~t~~e~~~l~i~~~~i~l~i~~~~~gi~~~~val- 387 (562)
.++.++....+..+....+-+...++.. +..+...+.+++.-+. .+..+.-.++.+++-+... .-+..-..+.
T Consensus 187 ~~~~~~~a~~i~~v~~~i~g~~~~~~~~~~~~~~~~~~~l~~~~~~---~~l~LlP~ilvIiLal~~~-~vi~aL~igi~ 262 (454)
T TIGR00931 187 LLYTTVPSFVITAILFLVIGRSYATSNTQPDKVQAMLTALDSQFTL---SVLTLIPPLLVVILAMRKK-PTIPVLVVGAL 262 (454)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccccCcHhHHHHHHHHHHccCCC---CHHHHHHHHHHHHHHHhCC-ChHHHHHHHHH
Confidence 7766655544444333323222111111 1122223333333222 2333333333333333321 1112112222
Q ss_pred HHHHHHHHhCCcChHHHhh----------------c-----cCC--hhHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHhh
Q 008532 388 IGLSILLLLGVLDWDDCLS----------------E-----KSA--WDTLAWFAVLVGMAGQLTNLGIVTWMSDSVAKCL 444 (562)
Q Consensus 388 l~~~ll~~~gvl~~~~~~~----------------~-----~i~--w~~l~l~~~~~~l~~~l~~tGi~~~ia~~l~~~~ 444 (562)
.+.++..+.+-.+..|.++ + ++. .+++.++....+++..++++|..|.+.+.+.+..
T Consensus 263 ~g~ii~~~~qg~s~~~~~~~~~~G~~~~t~~~~v~~ll~~GGi~sM~~~i~lii~~~~lggil~~~G~l~~l~~~l~~~i 342 (454)
T TIGR00931 263 TGIITAAFVQGADVVRWITIAQNGFSMETGNEVLDGLLNRGGLQSMMWSLSLVMIALTFGGVLQRIGVLDVILQSANKKI 342 (454)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHcCccccccchHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHc
Confidence 2222222233233333321 0 111 1355666777888899999999999999998876
Q ss_pred ccCCCchHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhhhhhccccchhhHHhhc
Q 008532 445 QSFSLSWPAAFGVLQASYFLIHYLFASQTGHVGALYSAFLAMHLAAGVPGVLAALALAYNTNLFGAITHYSSGQAAVYYG 524 (562)
Q Consensus 445 ~~~~~~~~~~~~~l~~~~~~~~~~f~S~~a~~~il~Pi~~~la~~~Gv~p~~~~l~l~~~~~~~~~~tP~~s~~n~i~~~ 524 (562)
.+... ..+...+...+....+.+++....+.-+++-++.+..|+++.-+...+--++.....+.|.++... ...+
T Consensus 343 ~s~~~----~~l~t~~~~~i~~~i~~~~~~sil~~G~~~k~~~d~~~i~r~~LA~~ld~s~t~~~~LiPws~~g~-~~~~ 417 (454)
T TIGR00931 343 ISTWT----FDCSTSTSSIGVNVVTCEQYLSILLPGKTFESFYTKLNLAKKNLSRTLEDAGTLVNPLIPWGVSGA-YMAG 417 (454)
T ss_pred CCCcc----eehHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHcCCCHHHHHHHHHhhhhhhhhHHHHHHHHH-HHHH
Confidence 65321 222222222333334678888889999999999999999999988877766666677788854433 3334
Q ss_pred CCCCCHHHHHHHhHH
Q 008532 525 AGYIDLPDVFKMGFT 539 (562)
Q Consensus 525 ~g~i~~~d~~k~g~~ 539 (562)
.-+++.-|+..+.+.
T Consensus 418 ~lgv~~~~~iPy~fy 432 (454)
T TIGR00931 418 TLGVDTISYLPFAFL 432 (454)
T ss_pred HcCCCHHHHHHHHHH
Confidence 435566666655443
|
A single member of the NhaC family, a protein from Bacillus firmus, has been functionally characterized.It is involved in pH homeostasis and sodium extrusion. Members of the NhaC family are found in both Gram-negative bacteria and Gram-positive bacteria. |
| >COG3069 DcuC C4-dicarboxylate transporter [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.5e-09 Score=108.53 Aligned_cols=357 Identities=14% Similarity=0.132 Sum_probs=210.1
Q ss_pred HHHhccchHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhC--CChhhHHHHHHHHHHHhhhcCCChhhhhhHhHHHHHH
Q 008532 165 AFAAFTNEVIWLIVISFFFARGFVKTGLGDRIATYFVKWLG--KSTLGLSYGLTFSEALIAPAMPSTTARAGGVFLPIIK 242 (562)
Q Consensus 165 ~~~~~~~~~i~li~~~~~la~al~~tGl~~ria~~i~~~~g--~~~~~l~~~l~l~~~~ls~~~~s~~a~~~~i~~Pi~~ 242 (562)
.++.-+.+....+....-+++.++++|..|-+.+...|-++ ++|+.++..-.+++++++.++||.+... ..++.-..
T Consensus 67 ~ls~r~agLgm~Im~~~GfA~yM~~iga~~~~V~l~skPL~~ikspy~ll~~ay~i~~~m~~ai~SAtGlg-~llmaTLf 145 (451)
T COG3069 67 LLSNRGAGLGMMIMALCGFARYMTHIGANDAVVKLASKPLKYIKSPYLLLIAAYFVACLMSLAIPSATGLG-VLLMATLF 145 (451)
T ss_pred HHhcccccHHHHHHHhhcHHHHHHHhChhHHHHHHHhchhhhhcccHHHHHHHHHHHHHHHHHcccccchH-HHHHHHHH
Confidence 45566778899999999999999999999999998887765 4888899999999999999999998765 34444555
Q ss_pred HHHHHcCCCCCCCCcchhhhHHHHHhHHhhhhhcccccccchhHHHHHHHHHHcCCcccccHHHHHH-HHHHHHHHHHHH
Q 008532 243 SLSLSAGSKPGDSSSKKLGSYLIQSQFQSAGNSSALFLTAAAQNLLCLKLAEELGVIISSPWVSWFK-AACVPALVALLA 321 (562)
Q Consensus 243 ~i~~~~g~~p~~~~~~~~~~~l~l~~~~~~~~~g~~t~~g~~~n~i~~g~~~~~G~~i~~~~~~w~~-~~~~~~li~~~~ 321 (562)
++....|.+.. +..- + .++..+....|. ++-..+++ |..|.++. |++. +..|..+...+.
T Consensus 146 Pvlv~~Gvsr~-------aaaA---i-~Ast~~i~lsp~-s~~sv~aA---e~sgm~i~----~~~~~~~lpv~i~~iI~ 206 (451)
T COG3069 146 PVLVNLGVSRG-------AAAA---I-CASTAAIILSPT-SGDSVLAA---QVSGMKIA----DFAFHYQLPVSIAAIIG 206 (451)
T ss_pred HHHHHhcccch-------hhHH---H-hhchHHheeCCC-CcchHHHH---HhcCCceE----eeeeccCcHHHHHHHHH
Confidence 66666776421 1111 1 122222333333 22223332 22565444 5433 333433332222
Q ss_pred HHHHHHHh--cCCCCCCCCChhHHHHHHhhhcCCCCHHHHHHHHH--HHHHHHHHH--hcCCCCCChHHHHHHHHHHHHH
Q 008532 322 TPLILYKL--YPPEVKDTPDAPAMAAKKLKQLGPVTRNEWIMVGT--MLLAVSLWI--FGDALGIPSVVAAMIGLSILLL 395 (562)
Q Consensus 322 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~t~~e~~~l~i--~~~~i~l~i--~~~~~gi~~~~vall~~~ll~~ 395 (562)
....-++| |++++++.++ ++..+++.+...| .-+..+-. +++.++..- ..++.+++...+-+++..+..+
T Consensus 207 ~ai~hff~qr~~Dkk~~~~~-e~~eq~~~~~~~p---~~YAilPl~PlI~~lig~~~~~l~~ikl~i~t~mlI~l~i~m~ 282 (451)
T COG3069 207 MAIAHFFWQRYLDKKENIEH-EMLEQKEIDTVVP---AFYAILPLTPLIGVLIGFDGKGLPQIKLHIITIMLISLLIAML 282 (451)
T ss_pred HHHHHHHHHHHhhhhcccch-hHHHHhhhccCCc---hhhhhhhhhhHHHHHHhhccccchhhhhhhHHHHHHHHHHHHH
Confidence 22111222 1222222221 1111222211111 11111111 111111100 0111234444445555544433
Q ss_pred ---hCCcChHHHhh------ccCC---hhHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHhhccCCCchHHHHHHHHHHHH
Q 008532 396 ---LGVLDWDDCLS------EKSA---WDTLAWFAVLVGMAGQLTNLGIVTWMSDSVAKCLQSFSLSWPAAFGVLQASYF 463 (562)
Q Consensus 396 ---~gvl~~~~~~~------~~i~---w~~l~l~~~~~~l~~~l~~tGi~~~ia~~l~~~~~~~~~~~~~~~~~l~~~~~ 463 (562)
++-.+.||.++ +++. -+++.++.++-.+++.++.+|..|.+-+..+.. +..+ .....++.+..+
T Consensus 283 vefirk~n~k~~~~~l~~ff~GMg~~fanVV~liVAa~vFA~GL~tiGaIdalI~~a~~~-g~g~---~~vmli~~l~~~ 358 (451)
T COG3069 283 VEFLRKFNLKEVMDDLEAFFDGMGDAFANVVMLIVAAGVFAQGLKTIGAIDALISGATSF-GSGG---IGLMLILVLLTF 358 (451)
T ss_pred HHHhccccHHHHHHHHHHHHHHHHHHhhhhHHHHHhhHHHHHHhhHhhHHHHHHHHHHhc-CCCc---HHHHHHHHHHHH
Confidence 23333333322 1221 368888889999999999999999988877653 2211 122223333434
Q ss_pred HHHHHhchhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhhhhhccccchhhHHhhcCCCCCHHHHHHHhHHHHHH
Q 008532 464 LIHYLFASQTGHVGALYSAFLAMHLAAGVPGVLAALALAYNTNLFGAITHYSSGQAAVYYGAGYIDLPDVFKMGFTMALV 543 (562)
Q Consensus 464 ~~~~~f~S~~a~~~il~Pi~~~la~~~Gv~p~~~~l~l~~~~~~~~~~tP~~s~~n~i~~~~g~i~~~d~~k~g~~~~li 543 (562)
+....-.|..+-...+....-++|..+|+||+.+.++..++++++..+.|++.. .....|..+++..|..|...+..+.
T Consensus 359 L~aIvtGSGnApf~AF~~lip~~Aa~lgi~~v~l~mpm~~As~igRt~SPisgV-vvavaG~a~vSPfe~vKRts~pm~~ 437 (451)
T COG3069 359 LAAIVTGSGNAPFIAFVELIPKLAAGLGINPVYLIMPMLQASALGRTLSPVSGV-VVAVAGMAKVSPFEVVKRTSVPMLV 437 (451)
T ss_pred HHHHHhCCCCchhhhHHhhcchhhhhcCCChHHHhhhHHHHHhhccccccccce-eeeeccccccChhheeeccCcchhh
Confidence 444445677777778888888999999999999999999999988899998543 3344577889999999998888887
Q ss_pred HHHHHHH
Q 008532 544 NAIIWGV 550 (562)
Q Consensus 544 ~~vi~~~ 550 (562)
.++...+
T Consensus 438 ~lv~v~l 444 (451)
T COG3069 438 GLVTVIL 444 (451)
T ss_pred HHHHHhh
Confidence 7766544
|
|
| >PF03605 DcuA_DcuB: Anaerobic c4-dicarboxylate membrane transporter; InterPro: IPR004668 These proteins are members of the C4-Dicarboxylate Uptake (Dcu) family | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.9e-09 Score=109.14 Aligned_cols=325 Identities=17% Similarity=0.176 Sum_probs=194.5
Q ss_pred hcCCChHHHHHHHHHHHHH-hcCCChHHHHHhccchHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhCCChhhHHHHHH
Q 008532 138 LSPLPVGAWAFLGLTTSIV-TRTLAFPTAFAAFTNEVIWLIVISFFFARGFVKTGLGDRIATYFVKWLGKSTLGLSYGLT 216 (562)
Q Consensus 138 ~~~~p~~~~all~~~ll~l-~gv~~~~~~~~~~~~~~i~li~~~~~la~al~~tGl~~ria~~i~~~~g~~~~~l~~~l~ 216 (562)
.+.+..+..+-+++..+.+ +|. ++.+ -.+|++..+++...-+.+++.+|-.|++.+..-|..+++|+.+.+.--
T Consensus 15 ~GGiglG~~gg~G~~il~~~fgl-~Pg~----~PidVilII~aVi~a~a~lQaaGGlDylV~~Aek~LRk~Pk~It~lAP 89 (364)
T PF03605_consen 15 LGGIGLGLAGGLGVAILVFGFGL-KPGS----PPIDVILIIMAVITAAAALQAAGGLDYLVQIAEKILRKNPKYITFLAP 89 (364)
T ss_pred ccchHHHHHHHHHHHHHHHhcCC-CCCC----CCHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHhCCCcEEEehh
Confidence 3446777777777777666 564 4443 578899999999888999999999999998888888888888777777
Q ss_pred HHHHHhhhcCCChhhhhhHhHHHHHHHHHHHcCCCCCCCCcchhhhHHHHHhHHhhhhhcccccccchhHHHHHHHHHHc
Q 008532 217 FSEALIAPAMPSTTARAGGVFLPIIKSLSLSAGSKPGDSSSKKLGSYLIQSQFQSAGNSSALFLTAAAQNLLCLKLAEEL 296 (562)
Q Consensus 217 l~~~~ls~~~~s~~a~~~~i~~Pi~~~i~~~~g~~p~~~~~~~~~~~l~l~~~~~~~~~g~~t~~g~~~n~i~~g~~~~~ 296 (562)
+++.+++.+.+. +|++.-++|++..++++.|.+|+ +.+-.+. .++..+-.+.|+....-.+ .+.++.
T Consensus 90 ~vt~~~T~~~GT--gh~a~s~lPVI~eVA~~~~IRPe--------RPls~sv-vASq~aItaSPiSAA~~~~-~~~l~~- 156 (364)
T PF03605_consen 90 LVTYLFTFLAGT--GHVAYSLLPVIAEVAKENGIRPE--------RPLSISV-VASQIAITASPISAATVAM-IAILAP- 156 (364)
T ss_pred HHHHHHHHHhcc--cHHHHHhhHHHHHHHHHcCCCCC--------CchHHHH-HHHhcchhcCcHHHHHHHH-HHHHcc-
Confidence 777777776433 34436889999999999999986 2333322 3444554555555433222 223333
Q ss_pred CCcccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCChhHHHHHHh--------hhcCCCCHHHHHHHHHHHHH
Q 008532 297 GVIISSPWVSWFKAACVPALVALLATPLILYKLYPPEVKDTPDAPAMAAKKL--------KQLGPVTRNEWIMVGTMLLA 368 (562)
Q Consensus 297 G~~i~~~~~~w~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~g~~t~~e~~~l~i~~~~ 368 (562)
+++++ +.|.+...+|-+++..++..++..++-| |.++.|+.+|+.++.. ++..+.+++.|+...+|++.
T Consensus 157 ~~gv~--~~~iL~V~iPat~ig~~~~a~~~~~~Gk-eL~~Dp~yq~rl~~g~~~~~~~~~~~~~~~~~~Ak~SV~iFl~g 233 (364)
T PF03605_consen 157 AHGVS--LLQILAVTIPATLIGVLVAAFVSSRRGK-ELDDDPEYQERLADGLVKPPIKEESTEKELPPSAKLSVLIFLLG 233 (364)
T ss_pred ccCCC--HHHHHHhhHHHHHHHHHHHHHHHHhcCC-ccccCHHHHHHHhccccccccccccccccCChhhHHHHHHHHHH
Confidence 15688 9999999999999988888888775533 4444444333222110 01135677888888888887
Q ss_pred HHHHHhcCCC----------CCChH----HHHHHHHHHHHHhCCcChHHHhhccCChhHHHHHHHHHHHHHHHH--HhCH
Q 008532 369 VSLWIFGDAL----------GIPSV----VAAMIGLSILLLLGVLDWDDCLSEKSAWDTLAWFAVLVGMAGQLT--NLGI 432 (562)
Q Consensus 369 i~l~i~~~~~----------gi~~~----~vall~~~ll~~~gvl~~~~~~~~~i~w~~l~l~~~~~~l~~~l~--~tGi 432 (562)
++..+.-..+ .++.. .+.+..+.+..++.-.+.+++.+..+=-.-+.-..+.+++++.-+ -.+-
T Consensus 234 v~~VV~~g~f~~lrp~~~~~~l~m~~~Iq~~ML~~AalIll~cKv~~~~I~~~sVFkSGM~AvV~VfGVAWmgdTf~~ah 313 (364)
T PF03605_consen 234 VVAVVLYGSFPSLRPGFIKKPLSMTDAIQMFMLAAAALILLFCKVDPKKILSGSVFKSGMVAVVCVFGVAWMGDTFFNAH 313 (364)
T ss_pred HHHHHHHHHcccccccccccCCCHHHHHHHHHHHHHHHHHeeecCCHHHcccchhHHHhHHHHHHHhhHHHHHhhHHHHh
Confidence 7665532211 12221 122222233333444566665322111111222222333333221 1223
Q ss_pred HHHHHHHHHHhhccCCCchHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHcCCCH
Q 008532 433 VTWMSDSVAKCLQSFSLSWPAAFGVLQASYFLIHYLFASQTGHVGALYSAFLAMHLAAGVPG 494 (562)
Q Consensus 433 ~~~ia~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~f~S~~a~~~il~Pi~~~la~~~Gv~p 494 (562)
.+.+-+.+.+..++.| | .+.+. .+ +.....-|+.+++.+++|+.+ ++|++|
T Consensus 314 ~~~ik~~~~~~v~~~P--W--lfAv~--LF-~~S~Ll~SQAAT~~almPlgl----aLGI~P 364 (364)
T PF03605_consen 314 IDEIKDAAGSLVQQYP--W--LFAVA--LF-FVSALLYSQAATTKALMPLGL----ALGIPP 364 (364)
T ss_pred HHHHHHHHHHHHHHCc--H--HHHHH--HH-HHHHHHhhHHHHHHHHHHHHH----HcCCCC
Confidence 4445555666665543 3 33222 22 222346789999999999766 577775
|
Most proteins in this family are predicted to have 12 GES predicted transmembrane regions; however the one member whose membrane topology has been experimentally determined has 10 transmembrane regions, with both the N- and C-termini localized to the periplasm []. The DcuA and DcuB proteins are involved in the transport of aspartate, malate, fumarate and succinate in many species [, , ], and are thought to function as antiporters with any two of these substrates. Since DcuA is encoded in an operon with the gene for aspartase, and DcuB is encoded in an operon with the gene for fumarase, their physiological functions may be to catalyze aspartate:fumarate and fumarate:malate exchange during the anaerobic utilization of aspartate and fumarate, respectively []. The Escherichia coli DcuA and DcuB proteins have very different expression patterns []. DcuA is constitutively expressed; DcuB is strongly induced anaerobically by FNR and C4-dicarboxylates, while it is repressed by nitrate and subject to CRP-mediated catabolite repression.; GO: 0015556 C4-dicarboxylate transmembrane transporter activity, 0015740 C4-dicarboxylate transport, 0016021 integral to membrane |
| >PF04165 DUF401: Protein of unknown function (DUF401) ; InterPro: IPR007294 Members of this family are predicted to have 10 transmembrane regions | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.8e-08 Score=102.81 Aligned_cols=367 Identities=17% Similarity=0.166 Sum_probs=205.5
Q ss_pred HHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhcCCChHHHHHh----ccchHHHHHHHHHHHHHHHHHh-CHHHHHHHHH
Q 008532 126 LSIFLSTIAGLVLSPLPVGAWAFLGLTTSIVTRTLAFPTAFAA----FTNEVIWLIVISFFFARGFVKT-GLGDRIATYF 200 (562)
Q Consensus 126 l~i~~~~i~lw~~~~~p~~~~all~~~ll~l~gv~~~~~~~~~----~~~~~i~li~~~~~la~al~~t-Gl~~ria~~i 200 (562)
+.+|...+++-..+++|.+.....+..++.+....++++.... ..++++-.++...++.+.++|+ |..||+.+.+
T Consensus 5 ~~~f~iii~~~~~rki~i~~s~~~ga~~l~~~~~~~~~~~~~~~~~~~~~~~i~~il~i~~i~~~~~~~~g~l~~~~~~l 84 (385)
T PF04165_consen 5 LIVFLIIIVLLLLRKINIGISILLGALILGLLFGLGLDAFLKALASSSSWDTIVLILLIYFIMGLMEKLSGQLDRMVESL 84 (385)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 4445444444445679988877777666655544666655442 3456666666666667777777 9999999999
Q ss_pred HHHhCCChhhHHHHHHHHHHHhhhcCCChhhhhhHhHHHHHHHHHHHcCCCCCCCCcchhhhHHHHHhHHhhhhhccccc
Q 008532 201 VKWLGKSTLGLSYGLTFSEALIAPAMPSTTARAGGVFLPIIKSLSLSAGSKPGDSSSKKLGSYLIQSQFQSAGNSSALFL 280 (562)
Q Consensus 201 ~~~~g~~~~~l~~~l~l~~~~ls~~~~s~~a~~~~i~~Pi~~~i~~~~g~~p~~~~~~~~~~~l~l~~~~~~~~~g~~t~ 280 (562)
.+.++ | ..... .-+++. +.|+..+. .+-.|++.+.+++.+.+++ +|..... .-=.+.-...|
T Consensus 85 ~~l~~-R---~~~~~--~PAlIG-LLPmpGGA--~fSAPmV~~~~~~~~ls~e----~kt~iNy-----wFRHiwE~~~P 146 (385)
T PF04165_consen 85 KGLFP-R---VSLAF--IPALIG-LLPMPGGA--LFSAPMVEEAAEKMGLSPE----EKTFINY-----WFRHIWEFFWP 146 (385)
T ss_pred HHHHH-H---HHHHH--HHHHHh-cccCCCcc--eeehHHHHhhhhhccCCHH----HHHHHHH-----HHHHHHHHHhh
Confidence 98876 2 22222 223333 34555542 4668999999999988875 2211111 11111222233
Q ss_pred ccchhHHHHHHHHHHcCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCChhHHHHHHhhhcCCCCHHHHH
Q 008532 281 TAAAQNLLCLKLAEELGVIISSPWVSWFKAACVPALVALLATPLILYKLYPPEVKDTPDAPAMAAKKLKQLGPVTRNEWI 360 (562)
Q Consensus 281 ~g~~~n~i~~g~~~~~G~~i~~~~~~w~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~e~~ 360 (562)
.= |+.+..... .| ++ ..+....+.|.+++..+..++... |+.+++..+.++ .+ +..+
T Consensus 147 lY--pgiiLas~l--~g--i~--~~~~v~~~~P~~~~~~~~G~~~~~---r~~~~~~~~~~~-~~-----------~~l~ 203 (385)
T PF04165_consen 147 LY--PGIILASAL--SG--IS--VGEFVLAMWPITLLAFLIGWLFFL---RPLKKSEKKPRS-LK-----------DLLK 203 (385)
T ss_pred hh--hHHHHHHHH--hC--CC--HHHHHHHHHHHHHHHHHHHHHHHh---ccccccccCCcc-hH-----------HHHH
Confidence 22 444443322 35 56 779999999998887776655332 222211111111 11 1111
Q ss_pred HHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHhCCcChH---HHhhccCChhHHHHHHHHHHHHHHHHHhCHHHHHH
Q 008532 361 MVGTMLLAVSLWIFGDALGIPSVVAAMIGLSILLLLGVLDWD---DCLSEKSAWDTLAWFAVLVGMAGQLTNLGIVTWMS 437 (562)
Q Consensus 361 ~l~i~~~~i~l~i~~~~~gi~~~~vall~~~ll~~~gvl~~~---~~~~~~i~w~~l~l~~~~~~l~~~l~~tGi~~~ia 437 (562)
...-+...+++-+. ++++.......+.+.....+..+++ +.+++..+|.+++.+.+.+.+.+.++++|..|.+.
T Consensus 204 s~~Pil~~i~l~v~---~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~a~~~ki~~~i~~im~Fk~~l~~tG~~~~l~ 280 (385)
T PF04165_consen 204 SLWPILVIILLSVL---FKLPLALGLLIALLAILIYNRFRRKEIKEVLKEALEPKILLLIIGIMIFKEILEATGVVEELP 280 (385)
T ss_pred HHhHHHHHHHHHHH---HcchHHHHHHHHHHHHHHHhccCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcChHHHHH
Confidence 11111222222111 1355433222333333344444544 66677899999999999999999999999999999
Q ss_pred HHHHHhhccCCCchHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhh-hhhhccccc
Q 008532 438 DSVAKCLQSFSLSWPAAFGVLQASYFLIHYLFASQTGHVGALYSAFLAMHLAAGVPGVLAALALAYNTNL-FGAITHYSS 516 (562)
Q Consensus 438 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~f~S~~a~~~il~Pi~~~la~~~Gv~p~~~~l~l~~~~~~-~~~~tP~~s 516 (562)
+.+.+. +. +..++ ..+.-++....-..+.+.+++..|+..++... .+-..+ ++.++. +-.++|..
T Consensus 281 ~~l~~~----~i--p~~li-~~lipFivG~~TGi~~a~vgi~fPll~~l~~~--~~~~~l----a~~~g~~GvmlSP~H- 346 (385)
T PF04165_consen 281 EFLSSL----GI--PPFLI-IALIPFIVGLITGITQAFVGIAFPLLAPLIGG--LPYLVL----AYASGFAGVMLSPVH- 346 (385)
T ss_pred HHHHhC----CC--cHHHH-HHHHHHHHHHHHhHHHHHHHHHHHHHHHhccc--chHHHH----HHHHHHHHHhhchHH-
Confidence 888763 22 12222 22222232212233567788999998888643 333332 333332 33445653
Q ss_pred hhhHHhhcCCCCCHHHHHHHhHHHHHHHHHHHHH
Q 008532 517 GQAAVYYGAGYIDLPDVFKMGFTMALVNAIIWGV 550 (562)
Q Consensus 517 ~~n~i~~~~g~i~~~d~~k~g~~~~li~~vi~~~ 550 (562)
-.-.+...+-+.+..+.+|..++..++..++..+
T Consensus 347 lCLvlT~eYFk~~~~~v~k~l~~p~~i~~~~~~~ 380 (385)
T PF04165_consen 347 LCLVLTAEYFKADLGKVYKKLLPPALIFLAAGLL 380 (385)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 2233344555679999999888877665554433
|
|
| >PF07158 MatC_N: Dicarboxylate carrier protein MatC N-terminus; InterPro: IPR009827 This entry represents the N-terminal region of the bacterial dicarboxylate carrier protein MatC | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.8e-10 Score=100.92 Aligned_cols=127 Identities=15% Similarity=0.125 Sum_probs=110.6
Q ss_pred HHHHHHHHHHHHhhcCCChHHHHHHHHHHHH-HhcCCChHHHHHhccchHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Q 008532 125 LLSIFLSTIAGLVLSPLPVGAWAFLGLTTSI-VTRTLAFPTAFAAFTNEVIWLIVISFFFARGFVKTGLGDRIATYFVKW 203 (562)
Q Consensus 125 ~l~i~~~~i~lw~~~~~p~~~~all~~~ll~-l~gv~~~~~~~~~~~~~~i~li~~~~~la~al~~tGl~~ria~~i~~~ 203 (562)
.+..++.+++.=..+++|.+..++....++. +...++.||++++|.++.++.+.|...+-...+++|..|+++++..++
T Consensus 7 sl~~Lv~~i~ig~~~kiNiGllAi~~A~vig~~~~g~~~~~ii~gfP~~lf~~l~GVt~lf~iA~~NGTle~la~~~v~~ 86 (149)
T PF07158_consen 7 SLLALVAVIVIGFVRKINIGLLAIAFAFVIGTFLAGMSDKEIIAGFPTSLFITLVGVTLLFGIAQVNGTLELLAKKAVRL 86 (149)
T ss_pred HHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHcCCCHHHHHhhCCHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence 3334444444445688999999999886655 346689999999999999999999999999999999999999999999
Q ss_pred hCCChhhHHHHHHHHHHHhhhcCCChhhhhhHhHHHHHHHHHHHcCCCC
Q 008532 204 LGKSTLGLSYGLTFSEALIAPAMPSTTARAGGVFLPIIKSLSLSAGSKP 252 (562)
Q Consensus 204 ~g~~~~~l~~~l~l~~~~ls~~~~s~~a~~~~i~~Pi~~~i~~~~g~~p 252 (562)
.|++++.+.+.+++++++++.+.+...+.. +++.|+..++|++.|++|
T Consensus 87 ~~~r~~liP~v~f~~~~~lsa~G~g~~~~~-Ai~aPia~~lA~~~gi~p 134 (149)
T PF07158_consen 87 VGGRPALIPWVMFLLAAVLSAIGAGSIAAV-AIMAPIAMSLARRTGINP 134 (149)
T ss_pred cCCCceehHHHHHHHHHHHHHhCCChHHHH-HHHHHHHHHHHHHhCCCH
Confidence 999999999999999999999999877655 599999999999999987
|
The MatC protein is an integral membrane protein that could function as a malonate carrier []. |
| >COG2978 AbgT Putative p-aminobenzoyl-glutamate transporter [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.20 E-value=4e-08 Score=101.22 Aligned_cols=355 Identities=15% Similarity=0.153 Sum_probs=200.0
Q ss_pred HHHHHhCHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhhhcCCChhhhhhHhHHHHHHHHHHHcCCCCCCCCcchhhhHH
Q 008532 185 RGFVKTGLGDRIATYFVKWLGKSTLGLSYGLTFSEALIAPAMPSTTARAGGVFLPIIKSLSLSAGSKPGDSSSKKLGSYL 264 (562)
Q Consensus 185 ~al~~tGl~~ria~~i~~~~g~~~~~l~~~l~l~~~~ls~~~~s~~a~~~~i~~Pi~~~i~~~~g~~p~~~~~~~~~~~l 264 (562)
..-||+|+.+.+-+++.+...+ +++.-.++...+++... ++.+. +++.|+..-+..+.|..|- ..+
T Consensus 103 gvAE~SGll~alm~~~~~~~pk---~llt~~vvfigi~s~~a-sDaay--VVlpPlaAmiF~a~GRHPl--------AGl 168 (516)
T COG2978 103 GVAERSGLLSALMRKLLNKVPK---RLLTFTVVFIGILSHIA-SDAAY--VVLPPLAAMIFIALGRHPL--------AGL 168 (516)
T ss_pred hhhhhcccHHHHHHHHHhhcch---HHHhhHHHHHHHHHHHH-hhcce--eEecchHHHHHHHhCCCcH--------HHH
Confidence 4568999999888777766543 34333333333333332 44444 5788999989999998773 122
Q ss_pred HHHhHHhhhhhccc-ccccchhHHHHHHHHHHc----C--CcccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Q 008532 265 IQSQFQSAGNSSAL-FLTAAAQNLLCLKLAEEL----G--VIISSPWVSWFKAACVPALVALLATPLILYKLYPPEVKDT 337 (562)
Q Consensus 265 ~l~~~~~~~~~g~~-t~~g~~~n~i~~g~~~~~----G--~~i~~~~~~w~~~~~~~~li~~~~~~~~~~~~~~~~~~~~ 337 (562)
..++++..||.. -..-+...++..|+-+++ + |++ |+-..|+....- +++...+.+++.-+.-.||....
T Consensus 169 --aaafAgvsgGfsanl~~~~~D~Ll~GfTq~AA~iidp~~~v-np~~NwyF~~as-~~vl~~i~~fvTdKivEPRLg~~ 244 (516)
T COG2978 169 --AAAFAGVSGGFSANLLPGTIDPLLAGFTQPAAQIIDPSYQV-NPLMNWYFIAAS-VFVLTLIGWFVTDKIIEPRLGPY 244 (516)
T ss_pred --HHHHhhcccccccccccCcchHHHHHhhHHHHHhcCCcccc-CcchhHHHHHHH-HHHHHHHHHHHhccccccCCCCC
Confidence 233333333322 222233556778876652 1 333 345566544432 33344445555545444442222
Q ss_pred CChhHHHHHHhhhcCCCCHHHHHHH----HHHHHHH--HHHHhcCCC--------C--CC-hHHHHHHHHHHHHH-----
Q 008532 338 PDAPAMAAKKLKQLGPVTRNEWIMV----GTMLLAV--SLWIFGDAL--------G--IP-SVVAAMIGLSILLL----- 395 (562)
Q Consensus 338 ~~~~~~~~~~~~~~g~~t~~e~~~l----~i~~~~i--~l~i~~~~~--------g--i~-~~~vall~~~ll~~----- 395 (562)
++..++.+++.++..++|.+||+.+ +.+++.+ +.|..-+.. + .+ +-.-+++..+.+++
T Consensus 245 ~~~~~~~~~~~~~~~~~t~~Ekkgl~~Agi~~l~~~al~~~~~iP~~~~Lr~~~~~~~~~sPf~~siV~~i~~~FlipGl 324 (516)
T COG2978 245 QGLSSEAEDDENASQELTALEKKGLKWAGISFLATIALLAALVIPENSPLRDPDGGLVPDSPFMKSIVPFIFLLFLIPGL 324 (516)
T ss_pred CCcchhhhhhhhhhhhcCHHHhcccchhhHHHHHHHHHHHHHHcCCCCcccCCCCCcCCCChHHHhHHHHHHHHHHHhhh
Confidence 2111111233344556777777542 2222222 222221111 1 11 11222222222221
Q ss_pred -hC-----CcChHHHhhccCC--------hhHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHhhccCCCchHHHHHHHHHH
Q 008532 396 -LG-----VLDWDDCLSEKSA--------WDTLAWFAVLVGMAGQLTNLGIVTWMSDSVAKCLQSFSLSWPAAFGVLQAS 461 (562)
Q Consensus 396 -~g-----vl~~~~~~~~~i~--------w~~l~l~~~~~~l~~~l~~tGi~~~ia~~l~~~~~~~~~~~~~~~~~l~~~ 461 (562)
.| +-+.||+.+ .+. +-++.|+++-+ ....+.|++.+++|-.-.+.+++.+.+-...++-.++.
T Consensus 325 vYG~vtgtik~~kDvv~-~M~~~m~sMg~yiV~~FfaaQF--va~FnwSn~G~~~AV~GA~~L~~~gl~g~~lil~~ill 401 (516)
T COG2978 325 VYGRVTGTIKNDKDVVN-MMAESMSSMGGYIVIAFFAAQF--VAFFNWSNLGTIMAVKGADFLKAIGLTGLPLILGFILL 401 (516)
T ss_pred hhheeeeeeeccHHHHH-HHHHHHHHhhhHHHHHHHHHHH--HHHhcccccchhheechHhHHHHcCCCCcHHHHHHHHH
Confidence 12 235666543 111 22333444432 24677899999998777777766554323333333444
Q ss_pred HHHHHHHhchhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhhhhhccccchhh-HHhhcCC---CCCHHHHHHHh
Q 008532 462 YFLIHYLFASQTGHVGALYSAFLAMHLAAGVPGVLAALALAYNTNLFGAITHYSSGQA-AVYYGAG---YIDLPDVFKMG 537 (562)
Q Consensus 462 ~~~~~~~f~S~~a~~~il~Pi~~~la~~~Gv~p~~~~l~l~~~~~~~~~~tP~~s~~n-~i~~~~g---~i~~~d~~k~g 537 (562)
...+..++.|.++--.++.||+.|+-..+|.+|...-.+.-++.+....+||..+--- .+.+... +......+...
T Consensus 402 sa~inL~IgSASAkWailaPIfVPMlMllGysPe~tQaayRigDS~tniiTPlm~yfpLil~~~~kY~k~~GvGTL~s~m 481 (516)
T COG2978 402 SAFINLFIGSASAKWAILAPIFVPMLMLLGYSPEFTQAAYRIGDSVTNIITPLMPYFPLILAYAQKYDKDAGVGTLMSMM 481 (516)
T ss_pred HHHHHHHHhhHHHHHHHHhhHHHHHHHHhcCCHHHHHHHHHhcccccccccchhhhHHHHHHHHHHhCcCccHHHHHHHh
Confidence 4455667899999999999999999999999999888888888876667788643322 2333332 35688999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Q 008532 538 FTMALVNAIIWGVTGTFWWKFLGL 561 (562)
Q Consensus 538 ~~~~li~~vi~~~v~~~~w~~lGl 561 (562)
+|+++...+.+.+..+.||- +|+
T Consensus 482 LPYsi~f~i~w~~l~~iw~~-lgl 504 (516)
T COG2978 482 LPYSIAFLIAWTLLLLIWFL-LGL 504 (516)
T ss_pred hhHHHHHHHHHHHHHHHHHH-hCC
Confidence 99999999999888877754 443
|
|
| >KOG1281 consensus Na+/dicarboxylate, Na+/tricarboxylate and phosphate transporters [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.18 E-value=9.6e-11 Score=124.58 Aligned_cols=186 Identities=13% Similarity=0.159 Sum_probs=145.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhcC--C--------------ChHHHHHHHHHHHHH----------------------hc
Q 008532 117 EVSPQAWQLLSIFLSTIAGLVLSP--L--------------PVGAWAFLGLTTSIV----------------------TR 158 (562)
Q Consensus 117 ~ls~~~~~~l~i~~~~i~lw~~~~--~--------------p~~~~all~~~ll~l----------------------~g 158 (562)
+++..|+.+..+|++++.+|.++. + -...++.+...++.. .|
T Consensus 341 ~~~~~e~~v~ilfil~v~lw~tr~p~~~pgw~~~f~~~~~~~d~t~~~~i~ilLf~lps~~~~f~~~~~~~~~p~~~~~~ 420 (586)
T KOG1281|consen 341 PMFFAEKPVFILFILLVWLWFTRDPGFVPGWGDLFKPGFFQSDSTSVVIITILLFCLPSQIPGFGKSGFIAIIPIVVFFG 420 (586)
T ss_pred cchHHHHHHHHHHHHHHHHHHhcCCCCccchHhhcCCccceehhhHHHHHHHHhheecccCccccccCcccccccccccC
Confidence 678899999999999999999754 1 112334443333321 24
Q ss_pred CCChHHHHHhccchHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhCC-ChhhHHHHHHHHHHHhhhcCCChhhhhhHhH
Q 008532 159 TLAFPTAFAAFTNEVIWLIVISFFFARGFVKTGLGDRIATYFVKWLGK-STLGLSYGLTFSEALIAPAMPSTTARAGGVF 237 (562)
Q Consensus 159 v~~~~~~~~~~~~~~i~li~~~~~la~al~~tGl~~ria~~i~~~~g~-~~~~l~~~l~l~~~~ls~~~~s~~a~~~~i~ 237 (562)
..+|++.-..|.|+.+++..|++.+|.+.+++|+.++|++.+.+ +.+ ..+.+.+.+.++..+++-|.+|+++ + .++
T Consensus 421 l~~w~~~q~~fPWsIvlLlgGGfALakgv~sSGLs~~I~~~L~~-l~~~p~~~i~li~~ll~~v~TeF~Sntat-a-~If 497 (586)
T KOG1281|consen 421 LGLWKTVQFTFPWSIVLLLGGGFALAKGVSSSGLSSLIGNALKP-LESLPVFAILLIFSLLILVVTEFVSNTAT-A-SIF 497 (586)
T ss_pred ccchhhhcccCCchHhhhhccchhhhhhcccccHHHHHHHhhhh-cccCChHHHHHHHHHHHHHHHHHhcchhh-e-eeh
Confidence 45788887799999999999999999999999999999999999 666 6678888899999999999988764 4 599
Q ss_pred HHHHHHHHHHcCCCCCCCCcchhhhHHHHHhHHhhhhhcccccccchhHHHHHHHHHHcCCcccccHHHHHHHHHHHHHH
Q 008532 238 LPIIKSLSLSAGSKPGDSSSKKLGSYLIQSQFQSAGNSSALFLTAAAQNLLCLKLAEELGVIISSPWVSWFKAACVPALV 317 (562)
Q Consensus 238 ~Pi~~~i~~~~g~~p~~~~~~~~~~~l~l~~~~~~~~~g~~t~~g~~~n~i~~g~~~~~G~~i~~~~~~w~~~~~~~~li 317 (562)
+|++.+++++++.+|. ++++....+++.+ ++.|++++||.++++. |. +. -.||.+.|..+.+.
T Consensus 498 iPIl~ela~~l~~hpl---------yl~lp~tl~~SfA-f~LPvstpPNaivfs~----~~-~k--~~dm~~~G~~l~i~ 560 (586)
T KOG1281|consen 498 IPILAELAEALGIHPL---------YLMLPTTLACSFA-FMLPVSTPPNAIVFSM----GD-IK--GKDMLKVGLFLNIG 560 (586)
T ss_pred HHhHHHHHHhcCCCCc---------eeehhHHHHHHHH-HhcCCCCCCCeEEEee----cc-cc--hhhHhhhccchhHH
Confidence 9999999999998874 4777777776644 6789999999999876 43 45 56888888776655
Q ss_pred HHHHH
Q 008532 318 ALLAT 322 (562)
Q Consensus 318 ~~~~~ 322 (562)
..+..
T Consensus 561 ~~a~l 565 (586)
T KOG1281|consen 561 GPAIL 565 (586)
T ss_pred HHHHH
Confidence 44433
|
|
| >TIGR00774 NhaB Na+/H+ antiporter NhaB | Back alignment and domain information |
|---|
Probab=99.08 E-value=3.9e-09 Score=109.75 Aligned_cols=157 Identities=13% Similarity=0.005 Sum_probs=122.3
Q ss_pred HHhCCcChHHHhhccCChhHHHHHHHHHHHHHHHHHhCHHHHHH-HHHHHhhccCCCchHHHHHHHHHHHHHHHHHhchh
Q 008532 394 LLLGVLDWDDCLSEKSAWDTLAWFAVLVGMAGQLTNLGIVTWMS-DSVAKCLQSFSLSWPAAFGVLQASYFLIHYLFASQ 472 (562)
Q Consensus 394 ~~~gvl~~~~~~~~~i~w~~l~l~~~~~~l~~~l~~tGi~~~ia-~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~f~S~ 472 (562)
...|+.+.+++.+ ...-+..+++.+++.++.+..++|+.++++ +.+.+. ++ . ....+..+....+++. |.||
T Consensus 76 ~~iG~~s~~~v~~-e~~~n~iVLfLg~FmVAga~fmk~Ll~~I~tklll~i-~S--k-~~L~l~f~laaafLSa--FLsn 148 (515)
T TIGR00774 76 IAIGMTSAAHVKH-ELVANIEVLLLLVFMVAGIYFMKQLLLFIFTKLLLGI-RS--K-TLLSLAFCFAAAFLSA--FLDA 148 (515)
T ss_pred HHHCCCCHHHHHH-HhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-Cc--H-HHHHHHHHHHHHHHHH--HHHh
Confidence 3459999999875 677889999999999999999999999999 667765 42 2 2333444444555554 9999
Q ss_pred HHHHHHHHHHHHHH------------HHHcCCCHH-------------------HHHHHHHHHHhhhhhhccccchhhHH
Q 008532 473 TGHVGALYSAFLAM------------HLAAGVPGV-------------------LAALALAYNTNLFGAITHYSSGQAAV 521 (562)
Q Consensus 473 ~a~~~il~Pi~~~l------------a~~~Gv~p~-------------------~~~l~l~~~~~~~~~~tP~~s~~n~i 521 (562)
++++++++|+...+ +++.+.++- .+.+..++++|+++.+||+|+|||++
T Consensus 149 ttvtAvmIpVavgfy~~yh~~~s~~~~~~~d~~~d~~~~~~~~~~l~~fr~fl~~LLM~~aiaAnLGGvlTpIGnPQNLi 228 (515)
T TIGR00774 149 LTVVAVVISVAVGFYGIYHKVASGNPIGDHDHTDDDTITELTRDDLENFRAFLRSLMMHAGVGTALGGVMTMVGEPQNLI 228 (515)
T ss_pred HHHHHHHHHHHHHHhHHhhhhhccCchhhcCCCccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcccCCCCCchHHH
Confidence 99999999999999 555544332 36788899999999999999999999
Q ss_pred hhcCCCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 008532 522 YYGAGYIDLPDVFKMGFTMALVNAIIWGVTGTFWWK 557 (562)
Q Consensus 522 ~~~~g~i~~~d~~k~g~~~~li~~vi~~~v~~~~w~ 557 (562)
..+..+.++.||+....|..+..+++..+.++...|
T Consensus 229 ias~~g~~F~~FF~~m~Pv~LP~lIilll~~~l~~~ 264 (515)
T TIGR00774 229 IADQAGWLFGEFFLRMSPVTLPVFICGLLTCALVEK 264 (515)
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 887666778888888888888777776666665554
|
These proteins are members of the NhaB Na+:H+ Antiporter (NhaB) Family (TC 2.A.34). The only characterised member of this family is the Escherichia coli NhaB protein, which has 12 GES predicted transmembrane regions, and catalyses sodium/proton exchange. Unlike NhaA this activity is not pH dependent. |
| >PF06450 NhaB: Bacterial Na+/H+ antiporter B (NhaB); InterPro: IPR004671 The Escherichia coli NhaB Na+:H+ Antiporter (NhaB) protein has 12 predicted TMS, and catalyses sodium/proton exchange | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.1e-07 Score=95.98 Aligned_cols=407 Identities=17% Similarity=0.158 Sum_probs=232.6
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhcCCChHHHHHhccchHHHHHHHHHHHHHHHHHhCHHHHHHHH
Q 008532 120 PQAWQLLSIFLSTIAGLVLSPLPVGAWAFLGLTTSIVTRTLAFPTAFAAFTNEVIWLIVISFFFARGFVKTGLGDRIATY 199 (562)
Q Consensus 120 ~~~~~~l~i~~~~i~lw~~~~~p~~~~all~~~ll~l~gv~~~~~~~~~~~~~~i~li~~~~~la~al~~tGl~~ria~~ 199 (562)
..+|...+=|++++.+- .+..|.---+++++= .+..|..+++++......+.-.++.-+|+.+..--.-.+.-.+-.+
T Consensus 43 vaGWlLv~EFIFTLAMA-LKCYPLqpGGLLAiE-Av~iGmTsp~~v~hEi~~N~eViLLL~FMVAGIYFMK~lLlf~FTk 120 (515)
T PF06450_consen 43 VAGWLLVAEFIFTLAMA-LKCYPLQPGGLLAIE-AVAIGMTSPEQVYHEIAANFEVILLLMFMVAGIYFMKQLLLFVFTK 120 (515)
T ss_pred HHHHHHHHHHHHHHHHH-HhcCCCCCCcHHHHH-HHHHcCCCHHHHHHHHHhChHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 78899999999988774 444554444444433 3456889999999877777666666777777543333344444444
Q ss_pred HHHHhCCChhhHHHHHHHHHHHhhhcCCChhhhhhHhHHHHH---HHHHHHcCCCCC-----C---CC------------
Q 008532 200 FVKWLGKSTLGLSYGLTFSEALIAPAMPSTTARAGGVFLPII---KSLSLSAGSKPG-----D---SS------------ 256 (562)
Q Consensus 200 i~~~~g~~~~~l~~~l~l~~~~ls~~~~s~~a~~~~i~~Pi~---~~i~~~~g~~p~-----~---~~------------ 256 (562)
++-+. +|...+.+.+++.++++|.|.+.-+.++ +.+.+. +++.++.....+ | ++
T Consensus 121 lLl~i-rSK~~LSL~Fc~~aAfLSAFLDALTV~A--ViIsVa~GFY~iYHkvaSg~~~~~~~d~~~D~~v~~~~r~~Le~ 197 (515)
T PF06450_consen 121 LLLKI-RSKIVLSLAFCFAAAFLSAFLDALTVTA--VIISVAVGFYSIYHKVASGKDFHDDHDHTDDSKVDELNREDLEQ 197 (515)
T ss_pred HHHhh-HHHHHHHHHHHHHHHHHHHHHhhhhhhe--eeeEeeehhhhhhhhhhcCCCCCCccCCccchhhhhhhHHHHHH
Confidence 44444 3556788999999999999998877653 444443 344554311111 1 00
Q ss_pred cchhhhHHHHHhHHhhhhhcccccccchhHHHHHHHHHHcCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----
Q 008532 257 SKKLGSYLIQSQFQSAGNSSALFLTAAAQNLLCLKLAEELGVIISSPWVSWFKAACVPALVALLATPLILYKLYPP---- 332 (562)
Q Consensus 257 ~~~~~~~l~l~~~~~~~~~g~~t~~g~~~n~i~~g~~~~~G~~i~~~~~~w~~~~~~~~li~~~~~~~~~~~~~~~---- 332 (562)
-|.+-+.+++-.+.+..+||.+|..|-|+|.++... .| -. |.|++..+.|.++-.++...+.++.+-|.
T Consensus 198 FRaFLRsLmMH~~VGTALGGV~TmVGEPQNLiIa~~---ag--W~--F~eFflrmaPVt~PVl~~Gl~tc~l~Ek~~~fG 270 (515)
T PF06450_consen 198 FRAFLRSLMMHAAVGTALGGVMTMVGEPQNLIIAKQ---AG--WD--FGEFFLRMAPVTLPVLICGLLTCVLVEKFKWFG 270 (515)
T ss_pred HHHHHHHHHHhcccchhhcceeeecCCchhhhhhhh---cC--CC--HHHHHHhhccchHHHHHHHHHHHHHHHHhhhcC
Confidence 112335577777888899999999999999998543 46 56 88999999886654444333333322111
Q ss_pred CCCCCCChhHHH--HHHhhhcCCCCHHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHH----hCCcChHH---
Q 008532 333 EVKDTPDAPAMA--AKKLKQLGPVTRNEWIMVGTMLLAVSLWIFGDALGIPSVVAAMIGLSILLL----LGVLDWDD--- 403 (562)
Q Consensus 333 ~~~~~~~~~~~~--~~~~~~~g~~t~~e~~~l~i~~~~i~l~i~~~~~gi~~~~vall~~~ll~~----~gvl~~~~--- 403 (562)
...+.|+..+.+ +.+.++..+.+++++.-+.+=.+.-+..+.+-. ...+.++++|..+..+ .|+.+..+
T Consensus 271 YG~~lP~~Vr~iL~~~~~~~~~~rt~~~~~~L~vQa~~~vwLi~~LA--~HlA~VGlIGLsVIil~Taf~Git~EH~iGk 348 (515)
T PF06450_consen 271 YGAKLPENVRQILEEFDKEEDAKRTKQDKAKLIVQALIGVWLIVALA--FHLAEVGLIGLSVIILATAFCGITDEHAIGK 348 (515)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhHHHHHHHHHHHHhcCCcchhhhhH
Confidence 122334322111 122334456788888777665543333333221 3345666666655443 47766543
Q ss_pred HhhccCChhHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHhhccCCCchHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHH
Q 008532 404 CLSEKSAWDTLAWFAVLVGMAGQLTNLGIVTWMSDSVAKCLQSFSLSWPAAFGVLQASYFLIHYLFASQTGHVGALYSAF 483 (562)
Q Consensus 404 ~~~~~i~w~~l~l~~~~~~l~~~l~~tGi~~~ia~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~f~S~~a~~~il~Pi~ 483 (562)
.++|..+...+ +...+++..++.+..+.+-+.++....-++. + ..+....=..+++ +.+|.=+..+-+.=.
T Consensus 349 AFeEaLPFTAL--L~VFF~vVaVI~dQ~LF~PiI~~VL~~~~~~----Q-l~~fy~aNGlLS~--iSDNVFV~TVYI~E~ 419 (515)
T PF06450_consen 349 AFEEALPFTAL--LVVFFAVVAVIIDQHLFTPIIQFVLSAEGSS----Q-LAMFYIANGLLSM--ISDNVFVATVYINEV 419 (515)
T ss_pred hHhhccchHHH--HHHHHHHHHHHhhhhhhHHHHHHHHcCCCcc----c-hhHHHHhhhhHHh--hccceeEEEEeHhhH
Confidence 34455565544 3446777788888888888888887753332 1 1111111222332 566654433333322
Q ss_pred HHHHHHcCCCHHHH-HHHHHHH--HhhhhhhccccchhhHHhh---c----CCCCCHHHHHHHhHHHHHHHHHHHHHH
Q 008532 484 LAMHLAAGVPGVLA-ALALAYN--TNLFGAITHYSSGQAAVYY---G----AGYIDLPDVFKMGFTMALVNAIIWGVT 551 (562)
Q Consensus 484 ~~la~~~Gv~p~~~-~l~l~~~--~~~~~~~tP~~s~~n~i~~---~----~g~i~~~d~~k~g~~~~li~~vi~~~v 551 (562)
..--++-.++...+ .++++++ +|+-+..||- +|.+..+ + .-+.|+.++.+..+|++++.-++-...
T Consensus 420 k~A~~~G~Is~~qf~~LAVAINTGTNlPSVATPN--GQAAFLFLLTSalAPLirLSYgrMV~MAlPYTiVl~~vGl~~ 495 (515)
T PF06450_consen 420 KAALDAGVISREQFDLLAVAINTGTNLPSVATPN--GQAAFLFLLTSALAPLIRLSYGRMVWMALPYTIVLTLVGLLA 495 (515)
T ss_pred HHHHHcCCcCHHHHhhHHhhhhcCCCCCcCcCCC--chhHHHHHHHHhhHHHHHHhHhhHHhHhccHHHHHHHHHHHH
Confidence 22222233444333 2333343 3332333442 2223222 1 125789999999999999877665443
|
Unlike NhaA, IPR004670 from INTERPRO, this activity is not pH dependent.; GO: 0015385 sodium:hydrogen antiporter activity, 0006814 sodium ion transport, 0016021 integral to membrane |
| >COG2704 DcuB Anaerobic C4-dicarboxylate transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.02 E-value=3.7e-08 Score=98.56 Aligned_cols=345 Identities=18% Similarity=0.183 Sum_probs=184.1
Q ss_pred cCCChHHHHHHHHHHHHHhcCCChHHHHHhccchHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhCCChhhHHHHHHHH
Q 008532 139 SPLPVGAWAFLGLTTSIVTRTLAFPTAFAAFTNEVIWLIVISFFFARGFVKTGLGDRIATYFVKWLGKSTLGLSYGLTFS 218 (562)
Q Consensus 139 ~~~p~~~~all~~~ll~l~gv~~~~~~~~~~~~~~i~li~~~~~la~al~~tGl~~ria~~i~~~~g~~~~~l~~~l~l~ 218 (562)
+.+-.+..+-+++..+.+...+++.+ ...|++..+++...-+.+++.+|-.|++.+..-|.++++|+.+.+.--++
T Consensus 20 GGIglG~~GGlGv~il~f~f~~~P~~----~PidViliImAVv~aaaamQaaGGLD~mvqiAEkiLRknPK~iT~lAP~V 95 (436)
T COG2704 20 GGIGLGVAGGLGVLILVFIFGLKPGK----PPIDVILIIMAVVAAAAAMQAAGGLDYMVQIAEKILRKNPKYITILAPFV 95 (436)
T ss_pred cceeeeecccccHHHHhhhhcCCCCC----CChhhHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHhCCCeEEEehhHH
Confidence 33666677666666665543344433 57888999999988899999999999988888888888888877766667
Q ss_pred HHHhhhcCCChhhhhhHhHHHHHHHHHHHcCCCCCCCCcchhhhHHHHHhHHhhhhhcccccccchhHHHHHHHHHHcCC
Q 008532 219 EALIAPAMPSTTARAGGVFLPIIKSLSLSAGSKPGDSSSKKLGSYLIQSQFQSAGNSSALFLTAAAQNLLCLKLAEELGV 298 (562)
Q Consensus 219 ~~~ls~~~~s~~a~~~~i~~Pi~~~i~~~~g~~p~~~~~~~~~~~l~l~~~~~~~~~g~~t~~g~~~n~i~~g~~~~~G~ 298 (562)
+..++.+.+. .|+..-.+|++..++++.|.+|+.| +-.+. .++-.+=...|+.... .-..+.++..|
T Consensus 96 ty~lT~maGT--Gh~vySilPVI~eVA~~~gIrPeRP--------ls~av-VsSQ~aItASPISAAV-V~~~a~l~~~g- 162 (436)
T COG2704 96 TYTLTILAGT--GHVVYSILPVIAEVAKKNGIRPERP--------LSAAV-VSSQIAITASPISAAV-VYMSAVLEPLG- 162 (436)
T ss_pred HHHHHHhhcC--CceeeeehhHHHHHHHHcCCCCCCc--------chHHH-HHhhhhhhcCchHHHH-HHHHHHHhhcC-
Confidence 7777766432 3332468999999999999998622 22211 2333332333433221 11122333334
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCChhHHHHHH-hhh-------cCCCCHHHHHHHHHHHHHHH
Q 008532 299 IISSPWVSWFKAACVPALVALLATPLILYKLYPPEVKDTPDAPAMAAKK-LKQ-------LGPVTRNEWIMVGTMLLAVS 370 (562)
Q Consensus 299 ~i~~~~~~w~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-------~g~~t~~e~~~l~i~~~~i~ 370 (562)
.+ +.+-...-.|-+++...+..++..+.. +|.++.++..++.++. .++ .++.+++.|....+|+..++
T Consensus 163 -~~--~l~ll~v~IPaTl~g~~~~~l~~~~~g-keL~~Dp~yq~RL~~~~~~~~~~~t~~~~~~~~~Ak~sv~iFL~a~~ 238 (436)
T COG2704 163 -IS--YLTLLMVTIPSTLLGVLLMALFVWFRG-KELDDDPEYQKRLSEGLIRDGDTGTKLEKELPKSAKLSVWIFLGAVV 238 (436)
T ss_pred -cc--hheeeeEEecHHHHHHHHHHHHHHHhc-ccccCCHHHHHHhhCcccccCCcccccccccCccchhhHHHHHHHHH
Confidence 33 455556667777777776666665544 3433333322221111 111 23456667788888877776
Q ss_pred HHHhcCCC--------C---CChHH---HHHHHHHHHH-HhCCcChHHHhhccCCh-hHHHHHHHHHHHHHHHH--HhCH
Q 008532 371 LWIFGDAL--------G---IPSVV---AAMIGLSILL-LLGVLDWDDCLSEKSAW-DTLAWFAVLVGMAGQLT--NLGI 432 (562)
Q Consensus 371 l~i~~~~~--------g---i~~~~---vall~~~ll~-~~gvl~~~~~~~~~i~w-~~l~l~~~~~~l~~~l~--~tGi 432 (562)
..+..... | ++... ..++.+..+. +.--.|.+++.+ +.-+ .-+.-..+.+++++.-+ -.+-
T Consensus 239 ~vV~~a~~~s~r~~~~g~~~l~m~~~Iq~~ML~~a~li~l~~K~d~~~I~~-~svFksGM~A~v~ifGiAWl~dTf~~~h 317 (436)
T COG2704 239 VVVLYAAAPSLRPGFVGKPLLSMTLAIQIFMLSAAALIVLLCKTDPASILN-GSVFKSGMIACVAIFGIAWLGDTFVSAH 317 (436)
T ss_pred HHHHHHhccccccccCCCCcccHHHHHHHHHHHHhHheeEEecCChhhccC-cchhhhhhHHHHHHHhHHHHHHHHHHhh
Confidence 65532211 1 22111 1111111111 111234444322 1111 12222333444444322 1233
Q ss_pred HHHHHHHHHHhhccCCCchHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhhhhhc
Q 008532 433 VTWMSDSVAKCLQSFSLSWPAAFGVLQASYFLIHYLFASQTGHVGALYSAFLAMHLAAGVPGVLAALALAYNTNLFGAIT 512 (562)
Q Consensus 433 ~~~ia~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~f~S~~a~~~il~Pi~~~la~~~Gv~p~~~~l~l~~~~~~~~~~t 512 (562)
.+++-+....+.++.+ | .+.+. .++++ ...-|+.+++..++| ++.++|++|..+.- .+.+..+-+..
T Consensus 318 ~~~iK~~~~~lv~~~P--W--~~Ava--lF~vS-~lv~SQaAT~~al~P----~~lalGv~~~~lva--~~~Av~gyf~i 384 (436)
T COG2704 318 IDEIKAVAGELVQTYP--W--LLAVA--LFFVS-ALVNSQAATAKALVP----VALALGVPPLILVA--SFAAVSGYFFL 384 (436)
T ss_pred HHHHHHHHHHHHHcCc--H--HHHHH--HHHHH-HHHhhHHHHHHHHHH----HHHHcCCCHHHHHH--HHHHhceeEEc
Confidence 4555556666666543 3 22221 22222 245788889999988 45568999854332 22232255666
Q ss_pred cccchhh
Q 008532 513 HYSSGQA 519 (562)
Q Consensus 513 P~~s~~n 519 (562)
|. .|+.
T Consensus 385 Pt-Yp~~ 390 (436)
T COG2704 385 PT-YPTL 390 (436)
T ss_pred cC-Cccc
Confidence 64 3443
|
|
| >COG1757 NhaC Na+/H+ antiporter [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.6e-06 Score=92.36 Aligned_cols=379 Identities=13% Similarity=0.133 Sum_probs=212.8
Q ss_pred hcCCChHHHHHHHHHHHHHhc---CCChHHHHH-hc-----cchHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhCCCh
Q 008532 138 LSPLPVGAWAFLGLTTSIVTR---TLAFPTAFA-AF-----TNEVIWLIVISFFFARGFVKTGLGDRIATYFVKWLGKST 208 (562)
Q Consensus 138 ~~~~p~~~~all~~~ll~l~g---v~~~~~~~~-~~-----~~~~i~li~~~~~la~al~~tGl~~ria~~i~~~~g~~~ 208 (562)
...+|..+..+...+.....+ ..++++... .+ .-..++.+.+.-.+.+...++|..++..++.+++.. +
T Consensus 41 ~~~~~~~~~l~~~~iva~~~~~~~~~~~~~~~~~~~~~~~~~~~alli~~~~g~~~~~w~~~g~v~~~~~~gL~~i~--~ 118 (485)
T COG1757 41 FLNLPAHVALIIAIIVALFIARGLGFNYKDIIILIFLGLLGALTALLILLGIGAAIAAWAASGIVPALVYYGLKLIS--P 118 (485)
T ss_pred hcCcchhHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHh--H
Confidence 334666666666555544433 466665432 11 224455555666667778899999999999999864 4
Q ss_pred hhHHHHHHHHHHHhhhcCCChhhhhhHhHHHHHHHHHHHcCCCCCCCCcchhhhHHHHHhHHhhhhhcccccccchhHHH
Q 008532 209 LGLSYGLTFSEALIAPAMPSTTARAGGVFLPIIKSLSLSAGSKPGDSSSKKLGSYLIQSQFQSAGNSSALFLTAAAQNLL 288 (562)
Q Consensus 209 ~~l~~~l~l~~~~ls~~~~s~~a~~~~i~~Pi~~~i~~~~g~~p~~~~~~~~~~~l~l~~~~~~~~~g~~t~~g~~~n~i 288 (562)
.......++.+.+++..+.+...++ ...-|.+..+.+..|.++ ...+-....++..+..+.|..+..|..
T Consensus 119 ~~~~~~~f~~t~ivs~~~gts~gt~-~t~~~~l~~I~~~~gap~---------~l~agai~~GAyfgd~ispisdTt~~a 188 (485)
T COG1757 119 SIFFFDDFFITAIVSTATGTSWGTA-ATSGPALAGIGDSTGAPL---------ALTAGAILSGAYFGDKISPLSDTTILA 188 (485)
T ss_pred HHHHHHHHHHHHHHHHHhccchhhH-HHHHHHHHHHHHhcCCCH---------HHHHHHHHHHHHHHhhhhHhHHHHHHH
Confidence 4666777777888887776666665 588999999999998875 233333444555556666665555442
Q ss_pred HHHHHHHcCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCCCCChhHHHHHHhhhcCC-CCHHHHHHHHHHH
Q 008532 289 CLKLAEELGVIISSPWVSWFKAACVPALVALLATPLILYKLYPP-EVKDTPDAPAMAAKKLKQLGP-VTRNEWIMVGTML 366 (562)
Q Consensus 289 ~~g~~~~~G~~i~~~~~~w~~~~~~~~li~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~-~t~~e~~~l~i~~ 366 (562)
... .+ .+ +.|-.+.++...+...++.....+..-.. ..+++...++ +++.++..+ ........+...+
T Consensus 189 a~~----~~--~~--~~~~i~~~~y~~~~~~iv~~i~~~~lg~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~i~llp~~ 258 (485)
T COG1757 189 AGT----QG--VD--LVDHIKSNFYTTIPAFILALIVYFFLGFGSMLKAENRART--VEGLESILKVSFLINPILLLPYV 258 (485)
T ss_pred hcc----cc--cH--HHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhhhhhh--HhhcchHHhhhhhHHHHHHHHHH
Confidence 211 12 34 66666666555444443333333322211 1111110111 111111111 0111122223333
Q ss_pred HHHHHHHhcCCCCCChHHH----HHHHHHHHHHhCC---------------cChHHH---hhccCC--hhHHHHHHHHHH
Q 008532 367 LAVSLWIFGDALGIPSVVA----AMIGLSILLLLGV---------------LDWDDC---LSEKSA--WDTLAWFAVLVG 422 (562)
Q Consensus 367 ~~i~l~i~~~~~gi~~~~v----all~~~ll~~~gv---------------l~~~~~---~~~~i~--w~~l~l~~~~~~ 422 (562)
..+.++.++. +.--+ ........++.+. .+.+|+ ..+++. ..++.++.-+.+
T Consensus 259 ~v~~~~~~g~----~~~~~l~~~~~~~~~i~l~~g~~~~~~~~~~~~~g~~~~~~~~~~~l~~G~~sM~~~i~ilila~s 334 (485)
T COG1757 259 TVLVLALTGV----PAFPVLLAGINTAVIISLLYGGFSFLDAINALYLGFTTSVEEVLKLLNRGIKSMLGAILILILAWS 334 (485)
T ss_pred HHHHHHHhCC----chHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444432 22100 0111111111121 111221 111100 125566666788
Q ss_pred HHHHHHHhCHHHHHHHHHHHhhccCCCchHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Q 008532 423 MAGQLTNLGIVTWMSDSVAKCLQSFSLSWPAAFGVLQASYFLIHYLFASQTGHVGALYSAFLAMHLAAGVPGVLAALALA 502 (562)
Q Consensus 423 l~~~l~~tGi~~~ia~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~f~S~~a~~~il~Pi~~~la~~~Gv~p~~~~l~l~ 502 (562)
+++.+++.|..+++.+.+.+...+.+. .-....+...+....-.+|.....+..|++.++++..++++....-.+-
T Consensus 335 iggi~~~~G~~~~l~~~~~~~i~s~~~----l~~~~~l~~~~~~~~tg~~~~si~i~gpia~~i~~~~~~~~~~l~~~l~ 410 (485)
T COG1757 335 IGGILEDLGTLEYLLSLLQKFIKSKGS----LPLIIFLLAILVAFATGTSWGSIIIMGPIAKEIADKLGLHSKRLSRALE 410 (485)
T ss_pred HHHHHHHcCcHHHHHHHHHhcCCCcch----hHHHHHHHHHHHHHHhhcceeeeeeeHHHHHHHHHHhCccHHHHHHHHH
Confidence 999999999999999999998765431 1222222333444446788899999999999999999999876544444
Q ss_pred HHHhhhhhhccccchhhHHhhcCC-CCCHHHHHHHhHHHHHHHHH
Q 008532 503 YNTNLFGAITHYSSGQAAVYYGAG-YIDLPDVFKMGFTMALVNAI 546 (562)
Q Consensus 503 ~~~~~~~~~tP~~s~~n~i~~~~g-~i~~~d~~k~g~~~~li~~v 546 (562)
.++.....+.|++..........+ ..+..|++.+.+...+...+
T Consensus 411 ~gg~~~~~~~Pws~~~i~~s~~~~~~v~~~t~lPya~~~~~~~i~ 455 (485)
T COG1757 411 AGGTFGDHLSPWSDTTILSSTGLGCIVHVTTQLPYAFYAALLIIV 455 (485)
T ss_pred hcCeecCCCCCcchhHHHHHhccCCCchhHhhHHHHHHHHHHHHH
Confidence 444457778999877665555554 57888888887777644433
|
|
| >PRK09412 anaerobic C4-dicarboxylate transporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.3e-07 Score=101.11 Aligned_cols=164 Identities=11% Similarity=0.076 Sum_probs=119.7
Q ss_pred CCChHHHHHHHHHHHHHhCCcChHHHhhccCChhHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHhhccCCCchHHHHHHH
Q 008532 379 GIPSVVAAMIGLSILLLLGVLDWDDCLSEKSAWDTLAWFAVLVGMAGQLTNLGIVTWMSDSVAKCLQSFSLSWPAAFGVL 458 (562)
Q Consensus 379 gi~~~~vall~~~ll~~~gvl~~~~~~~~~i~w~~l~l~~~~~~l~~~l~~tGi~~~ia~~l~~~~~~~~~~~~~~~~~l 458 (562)
|+..+..+.++.+++.+.--++++ +++|++++++.+...+..+++++|..|++++...+..++.+. ...+++.
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~vi~~Il~vg~~~~vl~~TGaid~~~~~~~k~~~~~~~--~~~lli~ 93 (433)
T PRK09412 21 GIGIGFAGGLGVLILTFIFGLKPG-----SIPIDVILIIMAVIAAIAAMQAAGGLDYLVKLAEKILRKNPK--YITFLAP 93 (433)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCC-----CCCHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCc--hhHhHHH
Confidence 356666677777776664223333 389999999999999999999999999999988887766442 2223332
Q ss_pred HHHHHHHHHHhchhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhhhhhccccchhhHHhhcCC--CCCHHHHHHH
Q 008532 459 QASYFLIHYLFASQTGHVGALYSAFLAMHLAAGVPGVLAALALAYNTNLFGAITHYSSGQAAVYYGAG--YIDLPDVFKM 536 (562)
Q Consensus 459 ~~~~~~~~~~f~S~~a~~~il~Pi~~~la~~~Gv~p~~~~l~l~~~~~~~~~~tP~~s~~n~i~~~~g--~i~~~d~~k~ 536 (562)
.+..+++ .+.++...+..+.|+..++++++|.||........++++.+...+|.+.+++.+.-... +++++|+++.
T Consensus 94 i~~~lfs--~~~~~~~~~i~~~PI~i~ia~~lG~d~~~~l~~~~~~a~iG~~aspin~~tv~ia~~ia~~gi~f~~~~~~ 171 (433)
T PRK09412 94 IVTYLFT--FLAGTGHIAFSTLPVIAEVAKEQGIRPSRPLSIAVVASQIAITASPISAAVVAMSSVLEPLGVSYLTLLMV 171 (433)
T ss_pred HHHHHHH--HHhcHHHHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHhcccCCccHHHHHHHHHHhcCCCCHHHHHHH
Confidence 3332233 34555556678999999999999999975555666777778888999777666544323 6999999999
Q ss_pred hHHHHHHHHHHHHHH
Q 008532 537 GFTMALVNAIIWGVT 551 (562)
Q Consensus 537 g~~~~li~~vi~~~v 551 (562)
.+|..++..++....
T Consensus 172 ~lp~~iv~~~~~~~~ 186 (433)
T PRK09412 172 VIPSTLLAVMVAAFV 186 (433)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999987665544
|
|
| >TIGR00784 citMHS citrate transporter, CitMHS family | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.8e-07 Score=100.37 Aligned_cols=185 Identities=16% Similarity=0.141 Sum_probs=134.4
Q ss_pred HHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhcCCChHHH---HHhccchHH---HHHHHHHHHHHHHHHhCHHHHH
Q 008532 123 WQLLSIFLSTIAGLVLSPLPVGAWAFLGLTTSIVTRTLAFPTA---FAAFTNEVI---WLIVISFFFARGFVKTGLGDRI 196 (562)
Q Consensus 123 ~~~l~i~~~~i~lw~~~~~p~~~~all~~~ll~l~gv~~~~~~---~~~~~~~~i---~li~~~~~la~al~~tGl~~ri 196 (562)
+..+..++..+++...+.++..+.++++..+..+.+..+.++. ..+..|+.+ .++++.-++..+++++|..|.+
T Consensus 232 ~~~Ll~~l~viv~~~~~~~~~~~~~li~~~iall~~~~~~~~~~~~i~~~~~~~v~~~~Li~~aglf~~~l~~~G~i~~l 311 (431)
T TIGR00784 232 WFNLLLTISLMVFLVLGTKHLSVLFLIAFVLALTVNYPNVKMQKERIAAHSGNALTVVSMVFAAGVFTGILSGTKMVDAM 311 (431)
T ss_pred HHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHhcCCCHHHHHHHHHhccccHhHHHHHHHHHHHHHHHHhhcCHHHHH
Confidence 5667777777777777778888888888888888776544332 333333333 4444444459999999999999
Q ss_pred HHHHHHHhCCChh-hHHHHHHHHHHHhhhcCCChhhhhhHhHHHHHHHHHHHcCCCCCCCCcchhhhHHHHHhHHhhhhh
Q 008532 197 ATYFVKWLGKSTL-GLSYGLTFSEALIAPAMPSTTARAGGVFLPIIKSLSLSAGSKPGDSSSKKLGSYLIQSQFQSAGNS 275 (562)
Q Consensus 197 a~~i~~~~g~~~~-~l~~~l~l~~~~ls~~~~s~~a~~~~i~~Pi~~~i~~~~g~~p~~~~~~~~~~~l~l~~~~~~~~~ 275 (562)
++.+.+..+++.. .....+...+..++.+++|+... ..+.|++.+++++.|.+|. .+..+...+.+.
T Consensus 312 a~~l~~~~~~~~~~~~~~i~~~~s~~~s~~~sn~a~~--~~l~Piv~~ia~~~G~~~~---------~l~~a~~i~~~~- 379 (431)
T TIGR00784 312 AGSLVSIIPSSMGGFFPVIVALTSIPFTFVMSNDAYY--FGVLPIFAEAASAYGIDPV---------EIARASIMGQPV- 379 (431)
T ss_pred HHHHHHHcCcchHHHHHHHHHHHHHHHHHHcCCHHHH--HHHHHHHHHHHHHcCCCHH---------HHHHHHHhcccc-
Confidence 9999998876544 57778888999999999777654 5999999999999998763 233333334333
Q ss_pred cccccccchhHHHHHHHHHHcCCcccccHHHHHHHHHHHHHHHHHHHHHHHH
Q 008532 276 SALFLTAAAQNLLCLKLAEELGVIISSPWVSWFKAACVPALVALLATPLILY 327 (562)
Q Consensus 276 g~~t~~g~~~n~i~~g~~~~~G~~i~~~~~~w~~~~~~~~li~~~~~~~~~~ 327 (562)
...+|. +++|.++.+. .| ++ ..|+.|.+++..+...++.....+
T Consensus 380 ~~~SPv-s~~~~l~~~~---~~--~~--~~d~~k~~~~~~~~~~~v~~~~~~ 423 (431)
T TIGR00784 380 HLLSPL-VPSTVLLVGM---LG--VS--LGDHQKFAVKWAVITSIVMTLLAL 423 (431)
T ss_pred hhcCCc-hHHHHHHHHc---cC--CC--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346788 7888888876 23 56 779999999888777666665543
|
This family includes two characterized citrate/proton symporters from Bacillus subtilis. CitM transports citrate complexed to Mg2+, while the CitH apparently transports citrate without Mg2+. The family also includes uncharacterized transporters, including a third paralog in Bacillus subtilis. |
| >COG4666 TRAP-type uncharacterized transport system, fused permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.2e-06 Score=92.25 Aligned_cols=396 Identities=16% Similarity=0.119 Sum_probs=205.2
Q ss_pred CCCcccchhHHHHHHHHH-HHHHHhcCCCC-----CCCHHHHHHHHHHHHHHHHHhhcC-CChHHHHHHHHHHH-HHhc-
Q 008532 88 PPPRGAKLLPFVISISIG-LILRFLVPKPV-----EVSPQAWQLLSIFLSTIAGLVLSP-LPVGAWAFLGLTTS-IVTR- 158 (562)
Q Consensus 88 ~~~~~~~~~~~~i~~~~~-l~~~~~~p~p~-----~ls~~~~~~l~i~~~~i~lw~~~~-~p~~~~all~~~ll-~l~g- 158 (562)
.+.+...+..|+++.+-. ...|...-..| +...+.-...+++...+++=.+++ .......+....+. .+.|
T Consensus 74 ~~~~~v~~~Dwlla~~~~~~~~Y~~~~y~~L~~R~g~~~~~D~v~g~~~illvlEatRR~~g~~L~~i~~~f~~Y~~~g~ 153 (642)
T COG4666 74 LPRKRVPLYDWLLAAAALFAAFYLVLNYAELIFRVGIPTTTDVVFGVLLILLVLEATRRSMGLPLPIIASLFILYGLFGE 153 (642)
T ss_pred CCCCCCcHHHHHHHHHHHHhcchheeehHHHHhccCCCCCccHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHhcccc
Confidence 344677778887765322 22332222122 111111245666666666666655 22222222222222 2233
Q ss_pred ---------CCChHHHHH-hc---------cchHHHHHHHHHHH-HHHHHHhCHHHHHHHHHHHHhCCChhhHHHHHHHH
Q 008532 159 ---------TLAFPTAFA-AF---------TNEVIWLIVISFFF-ARGFVKTGLGDRIATYFVKWLGKSTLGLSYGLTFS 218 (562)
Q Consensus 159 ---------v~~~~~~~~-~~---------~~~~i~li~~~~~l-a~al~~tGl~~ria~~i~~~~g~~~~~l~~~l~l~ 218 (562)
..++++... .+ .-.+-+.++.+|++ +.-++|+|..|++-+......|+++.+-.=.-.+.
T Consensus 154 ~~p~~~~h~g~~~~~~i~~~~~~~eGvfgt~~~Vs~~~IflFilFga~l~~~G~g~~fid~a~a~~G~~~GGpak~aVv~ 233 (642)
T COG4666 154 MTPGILAHPGYSLERLITRLYLTTEGVFGTAIGVSWTFIFLFILFGAFLVKSGAGQFFIDLAFALAGLRRGGPAKVAVVS 233 (642)
T ss_pred ccCccccCCCccHHHHHHHHHHhccceecchHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCCCcceeee
Confidence 245666544 11 11344555555555 67899999999999999988887665544444445
Q ss_pred HHHhhhcCCChhhhhhHhHHHHHHHHHHHcCCCCCCCCcchhhhHHHHHhHHhhhhhcccccccchhHHHHHHHHHHcCC
Q 008532 219 EALIAPAMPSTTARAGGVFLPIIKSLSLSAGSKPGDSSSKKLGSYLIQSQFQSAGNSSALFLTAAAQNLLCLKLAEELGV 298 (562)
Q Consensus 219 ~~~ls~~~~s~~a~~~~i~~Pi~~~i~~~~g~~p~~~~~~~~~~~l~l~~~~~~~~~g~~t~~g~~~n~i~~g~~~~~G~ 298 (562)
+.+......|..|.+ +.---..++++|+.|++|+. .-++=.+++.||-..|.=.+... .-.+|-.|
T Consensus 234 Sgl~G~isGSsvAN~-vttG~fTIPlMkR~Gy~~~~----------AgAvEaaAS~GGQimPPiMGAAA--FiMae~~g- 299 (642)
T COG4666 234 SGLMGMISGSSVANT-VTTGSFTIPLMKRAGYPPEF----------AGAVEAAASTGGQLMPPVMGAAA--FIMAEYLG- 299 (642)
T ss_pred cchhheecchhhhhh-hhcceeeHHHHHhcCCChhc----------ccceehhhhcCCchhhhhHHHHH--HHHHHHhC-
Confidence 555555555554443 23345566777899999851 11122355556665553222111 11122246
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCChhHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHhcCCC
Q 008532 299 IISSPWVSWFKAACVPALVALLATPLILYKLYPPEVKDTPDAPAMAAKKLKQLGPVTRNEWIMVGTMLLAVSLWIFGDAL 378 (562)
Q Consensus 299 ~i~~~~~~w~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~e~~~l~i~~~~i~l~i~~~~~ 378 (562)
++ +.|-.+.++.|++++....+...++--+|++.+... ++++....+.-++++..+.-+++.+.+...+
T Consensus 300 -ip--Y~~ii~aA~iPAllyy~~v~~~V~~eA~k~~~~gl~-----~~~lp~~~~~l~~~~~~llPl~~LI~~L~~~--- 368 (642)
T COG4666 300 -IP--YTEIILAAFIPALLYYFGVILMVHLEAKKDGLPGLP-----REQLPPLRPTLKEGWYYLLPLVLLIWLLGVG--- 368 (642)
T ss_pred -CC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC-----hhhCCchHHHHHhhhHHHHHHHHHHHHHHcC---
Confidence 56 889999999999988777776666544443322111 1112111111122333333222222222222
Q ss_pred CCChHHHHHHHH-HHH-----HHhC---CcC---hHHHhh---c--cCChhHHHHHHHHHHHHHHHHHhCHHHHHHHHHH
Q 008532 379 GIPSVVAAMIGL-SIL-----LLLG---VLD---WDDCLS---E--KSAWDTLAWFAVLVGMAGQLTNLGIVTWMSDSVA 441 (562)
Q Consensus 379 gi~~~~vall~~-~ll-----~~~g---vl~---~~~~~~---~--~i~w~~l~l~~~~~~l~~~l~~tGi~~~ia~~l~ 441 (562)
.++...+..+. .+. ..++ .+. .+|+++ + +..-++....+..-.+.++++-||+...+++.+.
T Consensus 369 -~sp~~aa~~s~Il~~~~~~~~~~~k~~~~g~~~~~~l~~aLe~gar~~i~v~ia~A~aGIIvGvitlTGlg~~~s~~l~ 447 (642)
T COG4666 369 -YSPGRAALLSSILITALVLRALFRKDTRMGKILARDLLEALESGARNVIPVAIACATAGIIVGVVTLTGLGLKLSSLLL 447 (642)
T ss_pred -cCHHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHhhHhHHHHHHHHHhhcceeeeEeecCchHHHHHHHH
Confidence 34554454442 211 1111 111 123321 1 1223455566666667778899999999999999
Q ss_pred HhhccCCCchHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhhhhhccc
Q 008532 442 KCLQSFSLSWPAAFGVLQASYFLIHYLFASQTGHVGALYSAFLAMHLAAGVPGVLAALALAYNTNLFGAITHY 514 (562)
Q Consensus 442 ~~~~~~~~~~~~~~~~l~~~~~~~~~~f~S~~a~~~il~Pi~~~la~~~Gv~p~~~~l~l~~~~~~~~~~tP~ 514 (562)
..-+++ ....+++.....++..+=+..++...+...+..+.-..+|+++....+.+-+-. ..+.+||+
T Consensus 448 ~l~~g~----l~l~L~lt~~~siiLGMGlPttanYIi~atl~aP~l~~~gv~~laaH~FVFYfG-i~AdiTPP 515 (642)
T COG4666 448 DLAGGN----LLLLLVLTMVISIILGMGLPTTANYIITATLAAPALIELGVPLLAAHFFVFYFG-IMADITPP 515 (642)
T ss_pred HHhccc----HHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHcCchHHHHHHHHHHHH-HHccCCCh
Confidence 875432 122222222222333333456666667777777777789999988777655543 35666764
|
|
| >TIGR00366 conserved hypothetical integral membrane protein | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.3e-05 Score=84.03 Aligned_cols=359 Identities=13% Similarity=0.051 Sum_probs=182.4
Q ss_pred CCChHHHHHhccchHHHHH------HHHHHHHHHHHHhCHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhhhcCCChhhh
Q 008532 159 TLAFPTAFAAFTNEVIWLI------VISFFFARGFVKTGLGDRIATYFVKWLGKSTLGLSYGLTFSEALIAPAMPSTTAR 232 (562)
Q Consensus 159 v~~~~~~~~~~~~~~i~li------~~~~~la~al~~tGl~~ria~~i~~~~g~~~~~l~~~l~l~~~~ls~~~~s~~a~ 232 (562)
..++.++.+.|++...-++ .-..+.+.++.++...+|+-+++.+.-+ +++.......+++.+.+.+-=.- ..
T Consensus 37 ~~~p~~~v~~wg~GfW~LL~F~MQM~lilvtG~~lA~sp~v~r~l~~la~~p~-t~~~ai~~v~~vs~~~s~inWG~-gL 114 (438)
T TIGR00366 37 KQTPVSLVDMWGNGFWNLLGFGMQMALILVTGYALAYSPIVYKLLKTIASLPK-TPKQAVALVTFIGSIACWINWGF-GL 114 (438)
T ss_pred CCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhCCC-CCCceeehHHHHHHHHHHHHHhH-HH
Confidence 3566666665544322222 2233447889999999999888887654 44444444444444444431111 11
Q ss_pred hhHhHHHHHHHHHHHcCCCCCCCCcchhhhHHHHHhHHh------hhhhcc-cccccchhHHHHHHHHHHc-C-C-cccc
Q 008532 233 AGGVFLPIIKSLSLSAGSKPGDSSSKKLGSYLIQSQFQS------AGNSSA-LFLTAAAQNLLCLKLAEEL-G-V-IISS 302 (562)
Q Consensus 233 ~~~i~~Pi~~~i~~~~g~~p~~~~~~~~~~~l~l~~~~~------~~~~g~-~t~~g~~~n~i~~g~~~~~-G-~-~i~~ 302 (562)
.+-.=.++.++|+.+ +-| . .++.+.++. .+++|+ -...+++-|.+.-...++. + . +++
T Consensus 115 --V~gallAre~Ar~~~-~vd---Y-----~lliAaaY~G~~~W~~GlS~S~pl~~at~g~~l~~~~~~~~~~~vIp~s- 182 (438)
T TIGR00366 115 --VVGAIFAREVARRVK-GSD---Y-----PLLIACAYIGFLTWHGGLSGSMPLLAATPNNPLKHIFVELFGRETIPLN- 182 (438)
T ss_pred --HHHHHHHHHHHHhcc-CCC---H-----HHHHHHHHHHHHHHhcchHHHHHHHhcCCCChhhhhhhccccCCeeCCc-
Confidence 111224567777664 111 1 122222222 112222 1222233333221110001 1 1 233
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCChhHHHHHH----hhhc--CCCCHHHHH----HHH-HHHHHHHH
Q 008532 303 PWVSWFKAACVPALVALLATPLILYKLYPPEVKDTPDAPAMAAKK----LKQL--GPVTRNEWI----MVG-TMLLAVSL 371 (562)
Q Consensus 303 ~~~~w~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~--g~~t~~e~~----~l~-i~~~~i~l 371 (562)
-.-+-.+.+...++.++...++.+...|++++....+++..+++ .++. .+.+..||. .+. ++.+....
T Consensus 183 -~Tif~~~nl~~~~~~~v~~~l~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tpae~le~S~~l~~lig~lg~~ 261 (438)
T TIGR00366 183 -ETIFSGYNLIITAIIIVFLPFITYMMMPKRGELKSIDPKLLKKEKEEEKKLKKKEDATIAEKLENSRVLALLIGALGII 261 (438)
T ss_pred -hhhhhHHHHHHHHHHHHHHHHHHHHhCCCCCCceeeChhhcccccccccccccCCCCChHHHHhcCHHHHHHHHHHHHH
Confidence 22233345555556666667777777776543211111111111 0011 113444432 121 11222222
Q ss_pred HHhc----CCCCCChHHHHHHHHHHHHHhCCcChHHHhhc---cCC--hhHHHHHHHHHHHHHHHHHhCHHH-----HHH
Q 008532 372 WIFG----DALGIPSVVAAMIGLSILLLLGVLDWDDCLSE---KSA--WDTLAWFAVLVGMAGQLTNLGIVT-----WMS 437 (562)
Q Consensus 372 ~i~~----~~~gi~~~~vall~~~ll~~~gvl~~~~~~~~---~i~--w~~l~l~~~~~~l~~~l~~tGi~~-----~ia 437 (562)
|+.. +-..++...+=++....-++. ..+.+|..+. .+. .+.++.+.-.-.+...++++|+.+ .++
T Consensus 262 y~~~~F~~~g~~l~LN~vN~~Fl~~Gil~-~~tp~~~~~a~~~g~~~~~gi~l~fpf~agI~~im~~s~l~~~~ls~~la 340 (438)
T TIGR00366 262 YLGMYFYEKGFNLTLNSVNLIFLIVGLLL-HKTPMAYMRAITRAARSVAGILVQFPFYAGIMGMMEHSGVGGGGPATLIT 340 (438)
T ss_pred HHHHHHHhcCCccchHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccchHHHHHH
Confidence 3221 111244333222222222222 4566665432 111 345555555555667788998888 776
Q ss_pred HHHHHhhccCCCchHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhhhhhccccch
Q 008532 438 DSVAKCLQSFSLSWPAAFGVLQASYFLIHYLFASQTGHVGALYSAFLAMHLAAGVPGVLAALALAYNTNLFGAITHYSSG 517 (562)
Q Consensus 438 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~f~S~~a~~~il~Pi~~~la~~~Gv~p~~~~l~l~~~~~~~~~~tP~~s~ 517 (562)
+.+.+..+.. ....++.+...++..++.|.++..++..|++.|+++.+|++|....++..++.+....++|.=.-
T Consensus 341 ~~lvs~a~~~-----~f~l~~~l~~~liNfFIPSGsGqwai~aPImvP~a~~LGvs~~~tv~Ay~~GD~~tNlI~PfWaL 415 (438)
T TIGR00366 341 EFFINVANKD-----TFPLMTFFSAGLINIFIPSGGGHWAIQGPIVIPAAQALGVDLGKSVMAIAYGDAWTNMAQPFWAL 415 (438)
T ss_pred HHHHhhCCcc-----HHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhHhHHHhhHHHHH
Confidence 6665543221 12223335555777789999999999999999999999999999999999998877777776433
Q ss_pred hhHHhhcCCCCCHHHHHHHhHHHH
Q 008532 518 QAAVYYGAGYIDLPDVFKMGFTMA 541 (562)
Q Consensus 518 ~n~i~~~~g~i~~~d~~k~g~~~~ 541 (562)
| ..+..+++.||.+.+.+...
T Consensus 416 P---~L~i~gL~arDImGy~~~~l 436 (438)
T TIGR00366 416 P---ALGIAGLGARDIMGYCITAL 436 (438)
T ss_pred H---HHHHcCCcHHHHhhHHHHHH
Confidence 3 24555689999998876543
|
|
| >PF02652 Lactate_perm: L-lactate permease; InterPro: IPR003804 L-lactate permease is an integral membrane protein probably involved in L-lactate transport | Back alignment and domain information |
|---|
Probab=98.81 E-value=4.9e-05 Score=82.85 Aligned_cols=131 Identities=17% Similarity=0.171 Sum_probs=91.2
Q ss_pred hhHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHhhccCCCchHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHc
Q 008532 411 WDTLAWFAVLVGMAGQLTNLGIVTWMSDSVAKCLQSFSLSWPAAFGVLQASYFLIHYLFASQTGHVGALYSAFLAMHLAA 490 (562)
Q Consensus 411 w~~l~l~~~~~~l~~~l~~tGi~~~ia~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~f~S~~a~~~il~Pi~~~la~~~ 490 (562)
|...+-+...+++++.+.++|....+++.+.+ .+.. ++.+.- .+.. +-.+.-.||+..-.++.++=...+++.
T Consensus 386 ~~~~i~~~~~~~~a~vm~~SGm~~~la~~~a~-~G~~---yp~~aP--~lG~-lG~FiTGS~T~SN~lF~~lQ~~~A~~l 458 (522)
T PF02652_consen 386 WPPAIAIIFFLALAYVMNYSGMTATLALALAA-TGAA---YPFFAP--FLGW-LGSFITGSNTSSNALFGPLQVTTAQQL 458 (522)
T ss_pred HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH-hCcc---HHHHHH--HHHH-HhcccccchHHHHHHHHHHHHHHHHHc
Confidence 67888888999999999999999999999988 5432 221111 1111 222234788888899999999999999
Q ss_pred CCCHHHHHHHHHHHHhhhhhhccccchhhHHhh----cCCCCCHHHHHHHhHHHHHHHHHHHHHHHH
Q 008532 491 GVPGVLAALALAYNTNLFGAITHYSSGQAAVYY----GAGYIDLPDVFKMGFTMALVNAIIWGVTGT 553 (562)
Q Consensus 491 Gv~p~~~~l~l~~~~~~~~~~tP~~s~~n~i~~----~~g~i~~~d~~k~g~~~~li~~vi~~~v~~ 553 (562)
|.||..+.-.-..+++.+..+ +|+|.... |..+ +..|.+|..++.+++..++..++.+
T Consensus 459 gl~~~l~~Aaq~~Gg~~g~mI----sp~~i~~a~a~~g~~g-~Eg~ilr~t~~~~l~~~~i~g~~~~ 520 (522)
T PF02652_consen 459 GLPPLLIAAAQNVGGAMGNMI----SPQNIVAAAAAVGLSG-KEGEILRKTLPPSLIYALIVGLLVF 520 (522)
T ss_pred CCCHHHHHHHHHHHHHHHhcc----CHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999987666555555533332 45564332 2222 4788999999998887777665543
|
; GO: 0015129 lactate transmembrane transporter activity, 0015727 lactate transport |
| >PRK12489 anaerobic C4-dicarboxylate transporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.78 E-value=5.9e-07 Score=95.14 Aligned_cols=164 Identities=16% Similarity=0.168 Sum_probs=124.9
Q ss_pred CCChHHHHHHHHHHHHH-hCCcChHHHhhccCChhHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHhhccCCCchHHHHHH
Q 008532 379 GIPSVVAAMIGLSILLL-LGVLDWDDCLSEKSAWDTLAWFAVLVGMAGQLTNLGIVTWMSDSVAKCLQSFSLSWPAAFGV 457 (562)
Q Consensus 379 gi~~~~vall~~~ll~~-~gvl~~~~~~~~~i~w~~l~l~~~~~~l~~~l~~tGi~~~ia~~l~~~~~~~~~~~~~~~~~ 457 (562)
|+..+..+.+|..++.+ +|. ++ .+.+||+++++.+.+..+.+++++|..|++.+.+.+..+.++. ...+ +
T Consensus 21 gig~g~~gg~g~~il~~~~~~-~p-----~~~p~~vil~Ilav~~~~a~Lq~TGgld~lv~~~~k~lrk~pk--~i~l-l 91 (443)
T PRK12489 21 GIGLGLLGGIGLVILVFVFGL-PP-----GKPPVDVMLIILAVVTASATLQAAGGLDVMLQIAERLLRRNPK--YITI-L 91 (443)
T ss_pred hhHHHHHHHHHHHHHHHHcCC-CC-----CCCcHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhccChh--HHHH-H
Confidence 47777778888887765 353 22 2479999999999999999999999999999999987655432 2222 2
Q ss_pred HHHHHHHHHHHhchhHH-HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhhhhhccccchhhHH---hhcC----CCCC
Q 008532 458 LQASYFLIHYLFASQTG-HVGALYSAFLAMHLAAGVPGVLAALALAYNTNLFGAITHYSSGQAAV---YYGA----GYID 529 (562)
Q Consensus 458 l~~~~~~~~~~f~S~~a-~~~il~Pi~~~la~~~Gv~p~~~~l~l~~~~~~~~~~tP~~s~~n~i---~~~~----g~i~ 529 (562)
...+..++ .|++|++ .+..++|+...+|++.|++|.-......+++..+...+|.+...|.+ ..+. ..++
T Consensus 92 ap~vt~l~--afl~~Tg~~v~~~lPVi~~vA~k~gi~PsrpLa~as~As~lGi~aSpin~~v~~l~~~l~~~~~~~~g~~ 169 (443)
T PRK12489 92 APFVTYTL--TFLCGTGHVVYSILPIIYDVALKNGIRPERPMAAASVASQMGITASPVSAAVVSLVAMLGNVTGEGRHIT 169 (443)
T ss_pred HHHHHHHH--HHhCCcHHHHHHHHHHHHHHHHHcCCChhhhHHHHHHHHHHHHHhcchhHHHHHHHHHHHhccCCCCCcC
Confidence 22232233 4889998 48999999999999999999887777777777667778887776655 2222 3589
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHH
Q 008532 530 LPDVFKMGFTMALVNAIIWGVTGT 553 (562)
Q Consensus 530 ~~d~~k~g~~~~li~~vi~~~v~~ 553 (562)
+.|+...++|.+++..+...++.+
T Consensus 170 ~f~il~VgIP~~~ig~l~~~l~~~ 193 (443)
T PRK12489 170 LLDILAVTIPATLIGVLAAALWSL 193 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999888766543
|
|
| >TIGR00786 dctM TRAP transporter, DctM subunit | Back alignment and domain information |
|---|
Probab=98.78 E-value=9e-07 Score=94.53 Aligned_cols=180 Identities=14% Similarity=0.082 Sum_probs=122.7
Q ss_pred HHHHHHHHHHHhhcCCChHHHHHHHHHH---H--HHhcCCChHHHHHhcc------chHHHHHHHHHHHHHHHHHhCHHH
Q 008532 126 LSIFLSTIAGLVLSPLPVGAWAFLGLTT---S--IVTRTLAFPTAFAAFT------NEVIWLIVISFFFARGFVKTGLGD 194 (562)
Q Consensus 126 l~i~~~~i~lw~~~~~p~~~~all~~~l---l--~l~gv~~~~~~~~~~~------~~~i~li~~~~~la~al~~tGl~~ 194 (562)
+.+.+..+..+..+..++.-.+...... . ...+..+++|..+.+. +...+++.+...++..++++|+.+
T Consensus 204 l~l~~~vi~~~~~g~~~~~~a~~~~~~~alli~~~~~~~~~~~~~~~~l~~~~~~~~~i~lii~aa~~~~~vL~~tG~~~ 283 (405)
T TIGR00786 204 LLLPVLIIGGIFSGIFTPTEAAAVAAVYALALSTFVYRELTLKSLCDVLLESLRTTSMVMLIIAGATVFSWLLTHAQIPQ 283 (405)
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHH
Confidence 4444445555666655554433332222 1 1236688888766555 477777778899999999999999
Q ss_pred HHHHHHHHHhCCChhhHHHHHHHHHHHhhhcCCChhhhhhHhHHHHHHHHHHHcCCCCCCCCcchhhhHHHHHhHHhhhh
Q 008532 195 RIATYFVKWLGKSTLGLSYGLTFSEALIAPAMPSTTARAGGVFLPIIKSLSLSAGSKPGDSSSKKLGSYLIQSQFQSAGN 274 (562)
Q Consensus 195 ria~~i~~~~g~~~~~l~~~l~l~~~~ls~~~~s~~a~~~~i~~Pi~~~i~~~~g~~p~~~~~~~~~~~l~l~~~~~~~~ 274 (562)
.+++.+.+. +.++....+.+.+...+++.+++|+.+. .++.|++.+++++.|.||. ...+...+++..
T Consensus 284 ~ia~~l~~~-~~~~~~~~~li~~~~~ilg~~~~~~a~~--~i~~PI~~p~a~~~Gv~p~---------~~~~~~~~~~~~ 351 (405)
T TIGR00786 284 RLADLLANA-ISSPIVFLIMINILLLIVGMFMDLTPAI--LILTPILLPVAVHLGIDPV---------HFGVMFVLNLEI 351 (405)
T ss_pred HHHHHHHhC-CccHHHHHHHHHHHHHHHHhcccHHHHH--HHHHHHHHHHHHHcCCChH---------HHHHHHHHHHHH
Confidence 999999985 5566777777888888999999998664 5889999999999999873 223333344444
Q ss_pred hccccc-ccchhHHHHHHHHHHcCCcccccHHHHHHHHHHHHHHHHHHHHHHH
Q 008532 275 SSALFL-TAAAQNLLCLKLAEELGVIISSPWVSWFKAACVPALVALLATPLIL 326 (562)
Q Consensus 275 ~g~~t~-~g~~~n~i~~g~~~~~G~~i~~~~~~w~~~~~~~~li~~~~~~~~~ 326 (562)
+..+| .|...+ +..+. .| ++ +.||+|.+.|..++..++..++.
T Consensus 352 -g~ltPPvg~~~~-~~~~~---~~--~~--~~~~~k~~~p~~~~~~~~~~~~~ 395 (405)
T TIGR00786 352 -GLLTPPVGTNLF-VASGV---AK--MS--ITEVTRALWPFLLAQFLVLLLVT 395 (405)
T ss_pred -hcCCCCchHHHH-HHHHh---cC--CC--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45565 663222 33443 34 56 88999999998877665555544
|
force-dependent uptake of dicarboxylates into R. capsulatus. |
| >COG3067 NhaB Na+/H+ antiporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.68 E-value=7.5e-06 Score=81.01 Aligned_cols=307 Identities=17% Similarity=0.186 Sum_probs=178.9
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhcCCChHHHHHhccchHHHHHHHHHHHHHHHHHhCHHHHHHHH
Q 008532 120 PQAWQLLSIFLSTIAGLVLSPLPVGAWAFLGLTTSIVTRTLAFPTAFAAFTNEVIWLIVISFFFARGFVKTGLGDRIATY 199 (562)
Q Consensus 120 ~~~~~~l~i~~~~i~lw~~~~~p~~~~all~~~ll~l~gv~~~~~~~~~~~~~~i~li~~~~~la~al~~tGl~~ria~~ 199 (562)
..+|...+=|++++.+- .+..|.---+++++= .+..|..+++++.+....+.-.++.-+|+.+...-.-.+.-.+-.+
T Consensus 43 ~agWlLV~EFIfTLAMA-LKCYPLqPGGLLaie-Av~iGmt~p~~v~~Ei~aN~eVlLLL~FMVAGIyFMKqLLLfiFtk 120 (516)
T COG3067 43 VAGWLLVAEFIFTLAMA-LKCYPLQPGGLLAIE-AVAIGMTSPEHVKEEVAANLEVLLLLMFMVAGIYFMKQLLLFIFTR 120 (516)
T ss_pred HHHHHHHHHHHHHHHHH-hhccCCCCCchHHHH-HHHHcCCCHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67898888898888764 344443333444332 2446888999988877777666676777777544333333333333
Q ss_pred HHHHhCCChhhHHHHHHHHHHHhhhcCCChhhhhhHhHHHHH---HHHHHHcCCCC--------CCC------------C
Q 008532 200 FVKWLGKSTLGLSYGLTFSEALIAPAMPSTTARAGGVFLPII---KSLSLSAGSKP--------GDS------------S 256 (562)
Q Consensus 200 i~~~~g~~~~~l~~~l~l~~~~ls~~~~s~~a~~~~i~~Pi~---~~i~~~~g~~p--------~~~------------~ 256 (562)
++-.. ++...+.+.+++..+++|.|...-+..+ +.+.+. +++.++..... .|+ +
T Consensus 121 lLl~i-RSK~~LSlaFc~~aAfLSAFLDALTVvA--VvISVavgFy~iYH~VaSg~~~~~~~D~~~D~~i~e~~~~~LE~ 197 (516)
T COG3067 121 LLLSI-RSKMLLSLAFCVAAAFLSAFLDALTVVA--VVISVAVGFYGIYHRVASGRTESDDTDITDDSHIDEHYKVVLEQ 197 (516)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhhee--eeeeehhhhhhhhhhhccCCCcccccCccccccCChHHHHHHHH
Confidence 33222 3556788899999999999998776542 333332 34444432111 110 0
Q ss_pred cchhhhHHHHHhHHhhhhhcccccccchhHHHHHHHHHHcCCcccccHHHHHHHHHHHHHH---HHHHHHHHHHH--hcC
Q 008532 257 SKKLGSYLIQSQFQSAGNSSALFLTAAAQNLLCLKLAEELGVIISSPWVSWFKAACVPALV---ALLATPLILYK--LYP 331 (562)
Q Consensus 257 ~~~~~~~l~l~~~~~~~~~g~~t~~g~~~n~i~~g~~~~~G~~i~~~~~~w~~~~~~~~li---~~~~~~~~~~~--~~~ 331 (562)
-|.+-+-+++-.+.+..+||.+|..|-|+|.++. +++| -. |+|++..+.|.++- +-++.+...-+ +|.
T Consensus 198 fRaFLRSLmMHagVGTALGGVmTmVGEPQNLiIa---~~Ag--W~--F~eFflrm~PVt~PV~i~GlltC~LvEKfr~FG 270 (516)
T COG3067 198 FRAFLRSLMMHAGVGTALGGVMTMVGEPQNLIIA---KQAG--WH--FGEFFLRMAPVTVPVLICGLLTCLLVEKFRWFG 270 (516)
T ss_pred HHHHHHHHHHhhccchhhcceeeeccCchhhhhh---hhcc--cc--HHHHHHHhcCchhHHHHHHHHHHHHHHHHhhcc
Confidence 1123355677777888899999999999999984 4456 56 88999999876543 33444444332 222
Q ss_pred CCCCCCCChhHHH--HHHhhhcCCCCHHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHH----hCCcChHH--
Q 008532 332 PEVKDTPDAPAMA--AKKLKQLGPVTRNEWIMVGTMLLAVSLWIFGDALGIPSVVAAMIGLSILLL----LGVLDWDD-- 403 (562)
Q Consensus 332 ~~~~~~~~~~~~~--~~~~~~~g~~t~~e~~~l~i~~~~i~l~i~~~~~gi~~~~vall~~~ll~~----~gvl~~~~-- 403 (562)
...+.|+..... +.+.++..++++++|..+.+=.+.-+..+.+-. +..+.++++|..+..+ .|+.+...
T Consensus 271 -YGa~LP~~Vr~vL~~~d~~~~~krt~Qdk~kL~vQa~i~vwLvvgLA--lHlA~VGliGLsvIilaTsftGvt~EH~iG 347 (516)
T COG3067 271 -YGATLPEKVRQVLQQFDDQSRHKRTRQDKIKLIVQAIIGVWLVVGLA--LHLAEVGLIGLSVIILATSFTGVTDEHAIG 347 (516)
T ss_pred -ccccccHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhhhhhHHHHHHHhhcCCcchhhhH
Confidence 122233321111 112233456788888777665543322222221 3455666666665443 57766543
Q ss_pred -HhhccCChhHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHh
Q 008532 404 -CLSEKSAWDTLAWFAVLVGMAGQLTNLGIVTWMSDSVAKC 443 (562)
Q Consensus 404 -~~~~~i~w~~l~l~~~~~~l~~~l~~tGi~~~ia~~l~~~ 443 (562)
.+++..+...++ ...+++..++-+..+.+-+.+.....
T Consensus 348 kAFqEsLPFTALL--~VFFsvVAVIidQ~LF~PiIqfVL~a 386 (516)
T COG3067 348 KAFQESLPFTALL--TVFFSVVAVIIDQHLFSPIIQFVLQA 386 (516)
T ss_pred HHHHhcCcHHHHH--HHHHHHHHHHHHhhhhHHHHHHHHcC
Confidence 445566665443 33456666776767777777776654
|
|
| >PRK10420 L-lactate permease; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=0.00024 Score=77.86 Aligned_cols=132 Identities=17% Similarity=0.085 Sum_probs=87.8
Q ss_pred hhHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHhhccCCCchHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHc
Q 008532 411 WDTLAWFAVLVGMAGQLTNLGIVTWMSDSVAKCLQSFSLSWPAAFGVLQASYFLIHYLFASQTGHVGALYSAFLAMHLAA 490 (562)
Q Consensus 411 w~~l~l~~~~~~l~~~l~~tGi~~~ia~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~f~S~~a~~~il~Pi~~~la~~~ 490 (562)
+...+-+...+++++.+.++|....+++.+.. .++ -++.+.- .+.. +-.+.-.||+..-.++.++=...|++.
T Consensus 406 ~~~~iti~~~vala~vm~~SGm~~~la~~~A~-~G~---~yp~~aP--~lG~-lG~FvTGS~TsSN~LF~~lQ~~tA~~l 478 (551)
T PRK10420 406 ALPIYSIGMVLAFAFISNYSGLSSTLALALAH-TGH---AFTFFSP--FLGW-LGVFLTGSDTSSNALFAALQATAAQQI 478 (551)
T ss_pred HHHHHHHHHHHHHHHHHHhcccHHHHHHHHHH-hCc---cHHHHHH--HHHh-hhcccccccHHHHHHHHHHHHHHHHHc
Confidence 66788888899999999999999999998874 433 1222111 1121 112224688888899999999999999
Q ss_pred CCCHHHHHHHHHHHHhhhhhhccccchhhHHh----hcCCCCCHHHHHHHhHHHHHHHHHHHHHHHHH
Q 008532 491 GVPGVLAALALAYNTNLFGAITHYSSGQAAVY----YGAGYIDLPDVFKMGFTMALVNAIIWGVTGTF 554 (562)
Q Consensus 491 Gv~p~~~~l~l~~~~~~~~~~tP~~s~~n~i~----~~~g~i~~~d~~k~g~~~~li~~vi~~~v~~~ 554 (562)
|+||..+.-.-..+++.+.++ +|+|... .|..+ +..|.+|..++.+++..++..++.+.
T Consensus 479 gl~~~li~Aaq~~Gg~~GkmI----spq~I~~a~a~vg~~G-~Eg~ilr~t~~~~l~~~~~~gi~~~~ 541 (551)
T PRK10420 479 GVSDVLLVAANTTGGVTGKMI----SPQSIAIACAAVGLVG-KESDLFRFTVKHSLIFTCMVGVITTL 541 (551)
T ss_pred CCCHHHHHHHHHHhhHHhhcc----CHHHHHHHHHHHccCC-cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999987665555555533333 4566433 23323 56777777777777766665555544
|
|
| >TIGR00770 Dcu anaerobic c4-dicarboxylate membrane transporter family protein | Back alignment and domain information |
|---|
Probab=98.63 E-value=2.7e-06 Score=90.76 Aligned_cols=162 Identities=13% Similarity=0.119 Sum_probs=120.3
Q ss_pred CCChHHHHHHHHHHHHHh-CCcChHHHhhccCChhHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHhhccCCCchHHHHHH
Q 008532 379 GIPSVVAAMIGLSILLLL-GVLDWDDCLSEKSAWDTLAWFAVLVGMAGQLTNLGIVTWMSDSVAKCLQSFSLSWPAAFGV 457 (562)
Q Consensus 379 gi~~~~vall~~~ll~~~-gvl~~~~~~~~~i~w~~l~l~~~~~~l~~~l~~tGi~~~ia~~l~~~~~~~~~~~~~~~~~ 457 (562)
|+..+..+.++..++.+. |. ++ +.+|+++++++.+.......++++|..|+..+.+.+..++.+. ...+++
T Consensus 17 g~~~g~~g~~g~~~~~~~~~~-~~-----~~~~~~vI~~il~vgg~~~vl~~TGaid~~v~~~~k~~~~~~~--~~~lli 88 (430)
T TIGR00770 17 GIGLGYAGGLGVLILCFGFGL-KP-----GKIPFDVILIIMAVIAAIAAMQAAGGLDYLVQIAEKLLRRNPK--YITILA 88 (430)
T ss_pred hHHHHHHHHHHHHHHHHHcCC-CC-----CCCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCcc--hhhhhH
Confidence 466777777887777664 53 32 2589999999999999999999999999999988887665442 122222
Q ss_pred HHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhhhhhccccchhhHHhhc--CCCCCHHHHHH
Q 008532 458 LQASYFLIHYLFASQTGHVGALYSAFLAMHLAAGVPGVLAALALAYNTNLFGAITHYSSGQAAVYYG--AGYIDLPDVFK 535 (562)
Q Consensus 458 l~~~~~~~~~~f~S~~a~~~il~Pi~~~la~~~Gv~p~~~~l~l~~~~~~~~~~tP~~s~~n~i~~~--~g~i~~~d~~k 535 (562)
..+.++.+ .+.+|......+.|+..++++++|.||........++++.+...+|.+.+++.+.-. ..+++++|++.
T Consensus 89 pii~~lfs--~~~g~~~~~l~f~PI~i~la~~lG~d~i~~~ai~~~aa~iG~~as~in~~~~~~ig~~~~~Gi~f~~~l~ 166 (430)
T TIGR00770 89 PSVTYFLT--ILAGTGHVVYSTLPVIAEVAKEQGIKPERPLSLAVVSSQIAITASPVSAAVVFMSAILEPLGIEYLDLLM 166 (430)
T ss_pred HHHHHHHH--HHhchHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhhcccHHHHHHHHHHHhCCCCHHHHHH
Confidence 23333333 246777888899999999999999999877777778888777788886655443321 12689999999
Q ss_pred HhHHHHHHHHHHHHH
Q 008532 536 MGFTMALVNAIIWGV 550 (562)
Q Consensus 536 ~g~~~~li~~vi~~~ 550 (562)
...|..++..++...
T Consensus 167 ~rip~~~v~l~v~~~ 181 (430)
T TIGR00770 167 VTIPSTFLGCMLTAF 181 (430)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999988766444
|
These proteins are members of th C4-Dicarboxylate Uptake (Dcu) Family (TC 2.A.13). Most proteins in this family have 12 GES predicted transmembrane regions; however one member has 10 experimentally determined transmembrane regions with both the N- and C-termini localized to the periplasm. The two Escherichia coli proteins, DcuA and DcuB, transport aspartate, malate, fumarate and succinate, and function as antiporters with any two of these substrates. Since DcuA is encoded in an operon with the gene for aspartase, and DcuB is encoded in an operon with the gene for fumarase, their physiological functions may be to catalyze aspartate:fumarate and fumarate:malate exchange during the anaerobic utilization of aspartate and fumarate, respectively. |
| >PRK09695 glycolate transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=0.00066 Score=74.62 Aligned_cols=132 Identities=15% Similarity=0.027 Sum_probs=86.9
Q ss_pred hhHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHhhccCCCchHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHc
Q 008532 411 WDTLAWFAVLVGMAGQLTNLGIVTWMSDSVAKCLQSFSLSWPAAFGVLQASYFLIHYLFASQTGHVGALYSAFLAMHLAA 490 (562)
Q Consensus 411 w~~l~l~~~~~~l~~~l~~tGi~~~ia~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~f~S~~a~~~il~Pi~~~la~~~ 490 (562)
|...+-+...+++++.++++|..+.+++.+. ..+. -++.+.- .+.. +-.+.-.||+..-.++.++=...|++.
T Consensus 414 ~~~~lti~~~vala~vm~~SGm~~~La~~~a-~~G~---~yp~~aP--~iG~-lG~FvTGS~TsSN~LF~~lQ~~tA~~l 486 (560)
T PRK09695 414 KWPILSIGMVLAFAFVTNYSGMSTTLALVLA-GTGV---MFPFFSP--FLGW-LGVFLTGSDTSSNALFGSLQSTTAQQI 486 (560)
T ss_pred HHHHHHHHHHHHHHHHHhccchHHHHHHHHH-HhCc---cHHHHHH--HHhh-hhcccccccHHHHHHHHHHHHHHHHHc
Confidence 6678888889999999999999999999996 3432 1221111 1121 112224688888899999999999999
Q ss_pred CCCHHHHHHHHHHHHhhhhhhccccchhhHHhh----cCCCCCHHHHHHHhHHHHHHHHHHHHHHHHH
Q 008532 491 GVPGVLAALALAYNTNLFGAITHYSSGQAAVYY----GAGYIDLPDVFKMGFTMALVNAIIWGVTGTF 554 (562)
Q Consensus 491 Gv~p~~~~l~l~~~~~~~~~~tP~~s~~n~i~~----~~g~i~~~d~~k~g~~~~li~~vi~~~v~~~ 554 (562)
|+||..+.-.-..+++.+.+ -+|+|.... |..+ +..|.+|..++.+++..++..++.+.
T Consensus 487 Gl~~~li~Aaq~~Gg~~Gkm----Ispq~I~~a~a~vgl~G-~Eg~ilr~t~~~~l~~~~i~gi~~~~ 549 (560)
T PRK09695 487 NVSDTLLVAANTSGGVTGKM----ISPQSIAVACAATGMVG-RESELFRYTVKHSLIFASVIGIITLL 549 (560)
T ss_pred CCCHHHHHHHHHHhhHHhhc----cCHHHHHHHHHHHccCC-chhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998766555555543333 355664332 3223 56677777777777666665555443
|
|
| >TIGR00795 lctP L-lactate transport | Back alignment and domain information |
|---|
Probab=98.49 E-value=0.00082 Score=73.61 Aligned_cols=132 Identities=20% Similarity=0.131 Sum_probs=90.5
Q ss_pred hhHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHhhccCCCchHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHc
Q 008532 411 WDTLAWFAVLVGMAGQLTNLGIVTWMSDSVAKCLQSFSLSWPAAFGVLQASYFLIHYLFASQTGHVGALYSAFLAMHLAA 490 (562)
Q Consensus 411 w~~l~l~~~~~~l~~~l~~tGi~~~ia~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~f~S~~a~~~il~Pi~~~la~~~ 490 (562)
|...+-....+++++.++++|..+.+++.+.+ .+.. ++.+.-.+ .. +-.+.-.|||..-.++.++=...|++.
T Consensus 392 ~~~~lt~~~~~~~a~vm~~sGm~~~la~~~A~-~G~~---yp~~aP~i--G~-lG~FiTGS~TsSN~LFg~lQ~~tA~~l 464 (530)
T TIGR00795 392 RLPILTIGMVLAFANVSNYSGMSKTLALALAH-TGLA---FTFFSPFL--GW-LGVFLTGSDTSSNLLFGSLQLLTAEQI 464 (530)
T ss_pred HHHHHHHHHHHHHHHHhccccHHHHHHHHHHH-hCCc---hHHHHHHH--Hh-hhcccccchHHHHHHHHHHHHHHHHHc
Confidence 55677777778899999999999999999998 5532 22221111 11 112224688888899999999999999
Q ss_pred CCCHHHHHHHHHHHHhhhhhhccccchhhHHh----hcCCCCCHHHHHHHhHHHHHHHHHHHHHHHHH
Q 008532 491 GVPGVLAALALAYNTNLFGAITHYSSGQAAVY----YGAGYIDLPDVFKMGFTMALVNAIIWGVTGTF 554 (562)
Q Consensus 491 Gv~p~~~~l~l~~~~~~~~~~tP~~s~~n~i~----~~~g~i~~~d~~k~g~~~~li~~vi~~~v~~~ 554 (562)
|+||....-.-..+++.+.++ +|+|... .|..+ +..|.+|..++.+++..++..++.+.
T Consensus 465 Gl~~~li~A~q~~Gg~~G~mI----sp~~I~~a~a~vg~~G-~Eg~ilr~t~~~~l~~~i~~gv~~~~ 527 (530)
T TIGR00795 465 GLPETLLLAANTVGGVMGKMI----SPQSIAIACAAVGLVG-QESDLFRKTVKYSLIYAIIVGVVALL 527 (530)
T ss_pred CCCHHHHHHHHHHhHHHhhcc----CHHHHHHHHHHHccCC-chhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999987665555555533333 4566433 23333 67888888888888887776666543
|
The only characterized member of this family, from E. coli, appears to catalyze lactate:H+ uptake. Members of this family have 12 probable TMS. |
| >PF02667 SCFA_trans: Short chain fatty acid transporter; InterPro: IPR006160 Members of this family may be short chain fatty acid transporters although there has been no experimental characterisation of this function | Back alignment and domain information |
|---|
Probab=98.46 E-value=0.00024 Score=74.95 Aligned_cols=365 Identities=16% Similarity=0.139 Sum_probs=185.3
Q ss_pred CChHHHHHhccchHHHHH------HHHHHHHHHHHHhCHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhhhcCCChhhhh
Q 008532 160 LAFPTAFAAFTNEVIWLI------VISFFFARGFVKTGLGDRIATYFVKWLGKSTLGLSYGLTFSEALIAPAMPSTTARA 233 (562)
Q Consensus 160 ~~~~~~~~~~~~~~i~li------~~~~~la~al~~tGl~~ria~~i~~~~g~~~~~l~~~l~l~~~~ls~~~~s~~a~~ 233 (562)
.++-|....+.+...-++ .-..+.+.++.++-..+|+-+++.+.- +++........+++.+.+.+-=. -.
T Consensus 41 ~~p~~~v~~Wg~GfW~LL~F~MQM~LilvtG~~lA~sp~v~r~l~~lA~~p-~t~~~Ai~lv~~vs~i~s~inWG-~g-- 116 (453)
T PF02667_consen 41 QSPLEMVEAWGDGFWSLLAFAMQMALILVTGYALASSPPVKRLLDRLASLP-KTPRQAIVLVALVSMIASWINWG-FG-- 116 (453)
T ss_pred CCHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHhcC-CCCcceeeHHHHHHHHHHHHHhh-HH--
Confidence 455556555544322222 223455789999999999999988764 44545444455555555544211 11
Q ss_pred hHhHHH-HHHHHHHHcCCCCCCCCcchhhhHHHHHhHHhhh------hhcc-cccccchhHHHHHHHHHH--cC-Ccccc
Q 008532 234 GGVFLP-IIKSLSLSAGSKPGDSSSKKLGSYLIQSQFQSAG------NSSA-LFLTAAAQNLLCLKLAEE--LG-VIISS 302 (562)
Q Consensus 234 ~~i~~P-i~~~i~~~~g~~p~~~~~~~~~~~l~l~~~~~~~------~~g~-~t~~g~~~n~i~~g~~~~--~G-~~i~~ 302 (562)
.+... ++++++|+.+ +. ++ .++.+.++..- ++|+ ....+++-|.......++ .| ++++
T Consensus 117 -LV~gallArelarr~~--~v-----dY--pllvAaaY~g~~vWh~GlSgS~pL~~At~g~~l~~~~~~~~~~~vIP~s- 185 (453)
T PF02667_consen 117 -LVVGALLARELARRVK--GV-----DY--PLLVAAAYSGFVVWHGGLSGSAPLLVATPGHFLEKIIGGLVITGVIPTS- 185 (453)
T ss_pred -HHHHHHHHHHHHHhcc--CC-----cH--HHHHHHHHHHHHHHhccccchhHHHhcCCCCcHHHHhcccccCCccCcc-
Confidence 12222 3456666543 11 11 12222233221 1111 111222222222111100 11 2333
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCChhHHHHH------HhhhcCCCCHHHHH----HHHHH-HHHHHH
Q 008532 303 PWVSWFKAACVPALVALLATPLILYKLYPPEVKDTPDAPAMAAK------KLKQLGPVTRNEWI----MVGTM-LLAVSL 371 (562)
Q Consensus 303 ~~~~w~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~g~~t~~e~~----~l~i~-~~~i~l 371 (562)
-.-+-.+++...++.++...++.+...|++++...-+++..++ +.++.++.+..||. .+..+ .+..+.
T Consensus 186 -eTif~~~nli~~~~~~v~~pli~~~m~P~~~~~~~i~~~~~~~~~~~~~~~~~~~~~tpae~le~S~~l~~lig~~g~~ 264 (453)
T PF02667_consen 186 -ETIFSPYNLIIVVVLLVVLPLINYLMAPKPEEAVEIDPELLAEEEEEEEKIPSPERATPAERLENSRILSLLIGLLGLA 264 (453)
T ss_pred -hhhcchHHHHHHHHHHHHHHHHHHHhCCCCcCceecChhhccccccccccccCCCcCCHHHHHhccHHHHHHHHHHHHH
Confidence 3334446666666667777777777766543211111111111 11112344555542 22221 111222
Q ss_pred HHh----cCCCCCChHHHHHHHHHHHHHh-C-CcChHHHhhccC--ChhHHH---HHHHHHHHHHHHHHhC-----HHHH
Q 008532 372 WIF----GDALGIPSVVAAMIGLSILLLL-G-VLDWDDCLSEKS--AWDTLA---WFAVLVGMAGQLTNLG-----IVTW 435 (562)
Q Consensus 372 ~i~----~~~~gi~~~~vall~~~ll~~~-g-vl~~~~~~~~~i--~w~~l~---l~~~~~~l~~~l~~tG-----i~~~ 435 (562)
++. .+-..++...+-++-..+-++. + ..+..+.+++.+ .+++++ +.+|.++ .|+.+| +.+.
T Consensus 265 yl~~~f~~~G~~L~LN~vnfiFL~lGllLh~tP~~y~~a~~~a~~~~~gIllQFPfYAGImG---mm~~sgl~g~sLa~~ 341 (453)
T PF02667_consen 265 YLVYYFATKGFSLNLNIVNFIFLFLGLLLHGTPRRYLRAVKEAVRSAAGILLQFPFYAGIMG---MMTGSGLGGVSLAQV 341 (453)
T ss_pred HHHHHHHhcCcccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhccccceeeechHHHHHHH---HHhhcCCCcchHHHH
Confidence 221 1111133333322222222221 2 223333333333 355554 5555544 344555 6779
Q ss_pred HHHHHHHhhccCCCchHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhhhhhcccc
Q 008532 436 MSDSVAKCLQSFSLSWPAAFGVLQASYFLIHYLFASQTGHVGALYSAFLAMHLAAGVPGVLAALALAYNTNLFGAITHYS 515 (562)
Q Consensus 436 ia~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~f~S~~a~~~il~Pi~~~la~~~Gv~p~~~~l~l~~~~~~~~~~tP~~ 515 (562)
+++.+.+..+... .+ .+ ..+...++..++.|.-+.-++=.|++.+-++++|+|+....++++++......+-|.=
T Consensus 342 is~~fvsiat~~T--fP-~~--~flsagivn~FVPSGGGqWaVqgP~~~~Aa~~Lgv~~~~~~ma~a~Gda~tNmiQPFW 416 (453)
T PF02667_consen 342 ISNFFVSIATPTT--FP-LF--TFLSAGIVNFFVPSGGGQWAVQGPIVMPAAQALGVDLGKTVMAYAWGDAWTNMIQPFW 416 (453)
T ss_pred HHHHHHHhcCCcc--HH-HH--HHHHHHHheeEecCCCceEEEecchHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988754432 22 22 2333345666788999999999999999999999999999999999887555555543
Q ss_pred chhhHHhhcCCCCCHHHHHHHhHHHHHHHHHHHHHH
Q 008532 516 SGQAAVYYGAGYIDLPDVFKMGFTMALVNAIIWGVT 551 (562)
Q Consensus 516 s~~n~i~~~~g~i~~~d~~k~g~~~~li~~vi~~~v 551 (562)
.-| ..+..+++.||++.+.+...++..++....
T Consensus 417 aLP---lL~I~GL~aRDImGy~~~~ll~~~~i~~~~ 449 (453)
T PF02667_consen 417 ALP---LLGIAGLKARDIMGYCVVILLVSGIIVSLG 449 (453)
T ss_pred HHH---HHHHcCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 222 245567899999999988888777665443
|
|
| >PF07158 MatC_N: Dicarboxylate carrier protein MatC N-terminus; InterPro: IPR009827 This entry represents the N-terminal region of the bacterial dicarboxylate carrier protein MatC | Back alignment and domain information |
|---|
Probab=98.36 E-value=4.4e-05 Score=68.59 Aligned_cols=140 Identities=9% Similarity=0.058 Sum_probs=98.7
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHH-HhCCcChHHHhhccCChhHHHHHHHHHHHHHHHHHhCHHHHHH
Q 008532 359 WIMVGTMLLAVSLWIFGDALGIPSVVAAMIGLSILL-LLGVLDWDDCLSEKSAWDTLAWFAVLVGMAGQLTNLGIVTWMS 437 (562)
Q Consensus 359 ~~~l~i~~~~i~l~i~~~~~gi~~~~vall~~~ll~-~~gvl~~~~~~~~~i~w~~l~l~~~~~~l~~~l~~tGi~~~ia 437 (562)
...+..++.+++.-. +.+++.+..++..+.++- +..-++.||++ +..+|+.++.+.|.--+-+..++.|-.|+++
T Consensus 5 iisl~~Lv~~i~ig~---~~kiNiGllAi~~A~vig~~~~g~~~~~ii-~gfP~~lf~~l~GVt~lf~iA~~NGTle~la 80 (149)
T PF07158_consen 5 IISLLALVAVIVIGF---VRKINIGLLAIAFAFVIGTFLAGMSDKEII-AGFPTSLFITLVGVTLLFGIAQVNGTLELLA 80 (149)
T ss_pred HHHHHHHHHHHHHHH---ccccchHHHHHHHHHHHHHHHcCCCHHHHH-hhCCHHHHHHHHHHHHHHHHHHHcCHHHHHH
Confidence 334444444443333 344888888877776544 33456889987 4899999999999888888899999999999
Q ss_pred HHHHHhhccCCCchHHHHHHHHHHHHHHHHHhch-hHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 008532 438 DSVAKCLQSFSLSWPAAFGVLQASYFLIHYLFAS-QTGHVGALYSAFLAMHLAAGVPGVLAALALAYNTN 506 (562)
Q Consensus 438 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~f~S-~~a~~~il~Pi~~~la~~~Gv~p~~~~l~l~~~~~ 506 (562)
++.....++... ....++..+...++. +.. +.++.+++.|+..++|++.|.||....+....+++
T Consensus 81 ~~~v~~~~~r~~--liP~v~f~~~~~lsa--~G~g~~~~~Ai~aPia~~lA~~~gi~p~l~~~~v~~Ga~ 146 (149)
T PF07158_consen 81 KKAVRLVGGRPA--LIPWVMFLLAAVLSA--IGAGSIAAVAIMAPIAMSLARRTGINPLLMALIVVCGAQ 146 (149)
T ss_pred HHHHHHcCCCce--ehHHHHHHHHHHHHH--hCCChHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHhccc
Confidence 999998876542 222222233333332 333 45677899999999999999999988887666553
|
The MatC protein is an integral membrane protein that could function as a malonate carrier []. |
| >COG1620 LldP L-lactate permease [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.35 E-value=0.0019 Score=68.84 Aligned_cols=156 Identities=19% Similarity=0.145 Sum_probs=99.0
Q ss_pred HHHHHHHhCCcChHHHhhc-----cCChhHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHhhccCCCchHHHHHHHHHHHH
Q 008532 389 GLSILLLLGVLDWDDCLSE-----KSAWDTLAWFAVLVGMAGQLTNLGIVTWMSDSVAKCLQSFSLSWPAAFGVLQASYF 463 (562)
Q Consensus 389 ~~~ll~~~gvl~~~~~~~~-----~i~w~~l~l~~~~~~l~~~l~~tGi~~~ia~~l~~~~~~~~~~~~~~~~~l~~~~~ 463 (562)
.+++..+.--.+++|..+. +--|.-++-++..+++++.+.++|....+++.+.+. ++. ++. +- -.+...
T Consensus 352 a~iIs~~i~~~~~~~~~~~~~~t~k~~~~p~lti~~~l~~~~l~~~SG~~~tla~~~A~~-G~~---fp~-fS-p~lGwi 425 (522)
T COG1620 352 AALISILLLKIKPKDAVTAFKETLKELKLPILTIIFALAMAYLMNYSGLSKTLALALAHT-GEA---FPL-FS-PFLGWI 425 (522)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHhc-CCC---chh-Hh-HHHHHH
Confidence 3333333335667764321 122778888899999999999999999999999876 432 221 11 111221
Q ss_pred HHHHHhchhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhhhhhccccchhhHHh-hcC-CCC-CHHHHHHHhHHH
Q 008532 464 LIHYLFASQTGHVGALYSAFLAMHLAAGVPGVLAALALAYNTNLFGAITHYSSGQAAVY-YGA-GYI-DLPDVFKMGFTM 540 (562)
Q Consensus 464 ~~~~~f~S~~a~~~il~Pi~~~la~~~Gv~p~~~~l~l~~~~~~~~~~tP~~s~~n~i~-~~~-g~i-~~~d~~k~g~~~ 540 (562)
-.+.-.|||..-..+-|+=...|++.|.|+....-+-+.+.. .+ -.-+++|..+ ... |.+ +..|.+|..++.
T Consensus 426 -G~FltGS~T~sN~lFg~lQ~~~A~~iG~s~~l~~AantvGg~-~g---kMIspqsIa~acaavg~~gkEg~l~r~tv~~ 500 (522)
T COG1620 426 -GVFLTGSNTSSNLLFGPLQQTTAEQIGLSPVLLVAANTVGGV-MG---KMISPQSIAAACAAVGLVGKEGDLLRKTVKP 500 (522)
T ss_pred -hhhhcccchHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhhhh-hc---cccCHHHHHHHHHHhccccchhHHHHHHHHH
Confidence 122347888888899999999999999999876544333332 22 2335667543 222 222 467888888888
Q ss_pred HHHHHHHHHHHHHHH
Q 008532 541 ALVNAIIWGVTGTFW 555 (562)
Q Consensus 541 ~li~~vi~~~v~~~~ 555 (562)
+++..++..++.+..
T Consensus 501 sl~~~~~~~i~~~l~ 515 (522)
T COG1620 501 SLIYLIIAGVITLLL 515 (522)
T ss_pred HHHHHHHHHHHHHHH
Confidence 887777766665543
|
|
| >COG1906 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.34 E-value=0.0024 Score=63.50 Aligned_cols=364 Identities=16% Similarity=0.164 Sum_probs=179.1
Q ss_pred HHHHHHHHHHHhhcCCChHHHHHHHHHHHHHh--cCCC-hHHHH----HhccchHHHHHHHHHHHHHHHHHhCHHHHHHH
Q 008532 126 LSIFLSTIAGLVLSPLPVGAWAFLGLTTSIVT--RTLA-FPTAF----AAFTNEVIWLIVISFFFARGFVKTGLGDRIAT 198 (562)
Q Consensus 126 l~i~~~~i~lw~~~~~p~~~~all~~~ll~l~--gv~~-~~~~~----~~~~~~~i~li~~~~~la~al~~tGl~~ria~ 198 (562)
+..|...+++-.. ++|.++.-+.+...+.++ |.-. .+..+ +.-.+..+..++..+.++..++|.|-.++...
T Consensus 8 l~lF~v~vvli~~-kvnigiSif~Gal~lall~Lg~~g~l~~~~~s~~s~st~~lIviv~fim~l~~~me~~G~l~k~~~ 86 (388)
T COG1906 8 LSLFTVVVVLIWL-KVNIGISIFLGALTLALLSLGIRGILLSLYLSVSSWSTWRLIVIVIFIMGLGYVMEQIGYLEKVEE 86 (388)
T ss_pred HHHHHHHHHHHhh-hhchhhhHHHHHHHHHHHhcCcchhHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHhchHHHHHh
Confidence 3344444444333 567666655555544433 4444 22222 22344566667777888999999999999999
Q ss_pred HHHHHhCCChhhHHHHHHHHHHHhhhcCCChhhhhhHhHHHHHHHHHHHcCCCCCCCCcchhhhHHHHHhHHhhhhhccc
Q 008532 199 YFVKWLGKSTLGLSYGLTFSEALIAPAMPSTTARAGGVFLPIIKSLSLSAGSKPGDSSSKKLGSYLIQSQFQSAGNSSAL 278 (562)
Q Consensus 199 ~i~~~~g~~~~~l~~~l~l~~~~ls~~~~s~~a~~~~i~~Pi~~~i~~~~g~~p~~~~~~~~~~~l~l~~~~~~~~~g~~ 278 (562)
-+...+++......- +.+. .+|-... + .+-.|+..+++++.|.+|+ +|.-....+ =.+--..
T Consensus 87 gll~lfpk~s~~~iP------alIG-LmPMPgG-A-liSApmi~p~~~k~~l~pe----~kt~iNYwf-----RHiwe~~ 148 (388)
T COG1906 87 GLLHLFPKHSLWTIP------ALIG-LMPMPGG-A-LISAPMIEPLAKKFGLNPE----KKTFINYWF-----RHIWELF 148 (388)
T ss_pred HHHHhcchhHHHHHH------HHHc-CcCCCCc-c-eEeeeeccccchhccCCHH----HHHHHHHHH-----HHHHHHh
Confidence 999888753222111 1111 2333322 1 3556889999999999885 221111110 0111111
Q ss_pred ccccchhHHHHHHHHHHcCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCChhHHHHHHhhhcCCCCHHH
Q 008532 279 FLTAAAQNLLCLKLAEELGVIISSPWVSWFKAACVPALVALLATPLILYKLYPPEVKDTPDAPAMAAKKLKQLGPVTRNE 358 (562)
Q Consensus 279 t~~g~~~n~i~~g~~~~~G~~i~~~~~~w~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~e 358 (562)
.|. -|..+..+.. .| ++ ..+.-...+|.+++.+...++..-.=.+++.++.++. ++.+ .+-
T Consensus 149 WPl--yqaVvi~sav--~g--vs--~~~vs~~~fP~~iia~t~G~lff~~~l~~~~~~~rnl----~~~l-------~nl 209 (388)
T COG1906 149 WPL--YQAVVITSAV--LG--VS--IREVSVKMFPLTIIALTIGYLFFNGPLKERLSKSRNL----RDLL-------INL 209 (388)
T ss_pred ccc--hHHHHHHHHH--hc--Cc--HHHHHHHHhHHHHHHHHHHHHHhcccchhhhhcCCCH----HHHH-------HHH
Confidence 221 1333332211 25 55 6688888899887766554332211011111111110 0000 111
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHhCCc---ChHHHhhccCChhHHHHHHHHHHHHHHHHHhCHHHH
Q 008532 359 WIMVGTMLLAVSLWIFGDALGIPSVVAAMIGLSILLLLGVL---DWDDCLSEKSAWDTLAWFAVLVGMAGQLTNLGIVTW 435 (562)
Q Consensus 359 ~~~l~i~~~~i~l~i~~~~~gi~~~~vall~~~ll~~~gvl---~~~~~~~~~i~w~~l~l~~~~~~l~~~l~~tGi~~~ 435 (562)
+....+.+..+++ ++|......++.+-....+.. ..+|.+++..|-.+++++.+.+....+.+++|+.+-
T Consensus 210 yPi~~vl~lsvll-------~Ldll~gs~~~~ls~~i~n~~r~~~l~e~lkrafnprI~~lliavmvfk~vIe~SGl~e~ 282 (388)
T COG1906 210 YPIAIVLVLSVLL-------GLDLLYGSFVAFLSISIPNVFRIRYLLEVLKRAFNPRIVLLLIAVMVFKEVIEHSGLVEI 282 (388)
T ss_pred hhHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHhccHHHH
Confidence 2222222222221 233322222222222223332 245666666776689999999999999999999997
Q ss_pred HHHHHHHhhccCCCchHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhhhhhcccc
Q 008532 436 MSDSVAKCLQSFSLSWPAAFGVLQASYFLIHYLFASQTGHVGALYSAFLAMHLAAGVPGVLAALALAYNTNLFGAITHYS 515 (562)
Q Consensus 436 ia~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~f~S~~a~~~il~Pi~~~la~~~Gv~p~~~~l~l~~~~~~~~~~tP~~ 515 (562)
+++..... +. +...+.+.- +++...-.-..+.+.+..|...+.-+. .+-..++.+-++ .+-.+.|..
T Consensus 283 ~ae~~l~f----~a-P~al~l~~~---fiiGlaTGI~fayvsiafPlL~pff~g--~~~lalay~ggy---~GvmlSPvH 349 (388)
T COG1906 283 FAEIMLSF----HA-PVALFLLLT---FIIGLATGIEFAYVSIAFPLLMPFFTG--FKKLALAYAGGY---MGVMLSPVH 349 (388)
T ss_pred HHHHHhcc----ch-hhHHHHHHH---HHHHHhhhhHHHHHHHhhhhhHHHhcc--chHHHHHHHhhh---hheecchhh
Confidence 77766543 21 112222221 122111112345566777877776543 343333332222 123344543
Q ss_pred chhhHHhhcCCC--CCHHHHHHHhHHHHHHHHHHHHH
Q 008532 516 SGQAAVYYGAGY--IDLPDVFKMGFTMALVNAIIWGV 550 (562)
Q Consensus 516 s~~n~i~~~~g~--i~~~d~~k~g~~~~li~~vi~~~ 550 (562)
.. .+.+.+| .+..|.+|..+-.+++...+..+
T Consensus 350 lC---lVlsaeyy~~ei~kvyrklllpavlt~~l~~L 383 (388)
T COG1906 350 LC---LVLSAEYYKAEIGKVYRKLLLPAVLTFALVGL 383 (388)
T ss_pred hh---hheeHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 22 2233333 46778888777777666555433
|
|
| >PRK10654 dcuC C4-dicarboxylate transporter DcuC; Provisional | Back alignment and domain information |
|---|
Probab=98.21 E-value=7.3e-05 Score=80.33 Aligned_cols=156 Identities=22% Similarity=0.271 Sum_probs=114.9
Q ss_pred HhcCCChHHHHHhccc----------hHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhhhc
Q 008532 156 VTRTLAFPTAFAAFTN----------EVIWLIVISFFFARGFVKTGLGDRIATYFVKWLGKSTLGLSYGLTFSEALIAPA 225 (562)
Q Consensus 156 l~gv~~~~~~~~~~~~----------~~i~li~~~~~la~al~~tGl~~ria~~i~~~~g~~~~~l~~~l~l~~~~ls~~ 225 (562)
..+..++||+++...+ +++.++++.-+++++++++|+.+.+++.+.+. +.+...+.+.+.+...+.+..
T Consensus 286 ~~r~~~~k~v~~~l~~~~~GMg~~~a~Vv~liiaAgvfs~gL~~~Gl~~~l~~~l~~l-g~~~~~illv~~il~~l~~~~ 364 (455)
T PRK10654 286 FLRSFNTKKVFSGLEVAYRGMADAFAGVVMLLVAAGVFAQGLSTIGFIQSLISLATSF-GSAGIILMLVLVILTMLAAIT 364 (455)
T ss_pred HHhCCCHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHc-CCChHHHHHHHHHHHHHHHHH
Confidence 3478999998664444 68899999999999999999999999998886 555566666666777777888
Q ss_pred CCChhhhhhHhHHHHHHHHHHHcCCCCCCCCcchhhhHHHHHhHHhhhhhcccccccchhHHHHHHHHHHcCCcccccHH
Q 008532 226 MPSTTARAGGVFLPIIKSLSLSAGSKPGDSSSKKLGSYLIQSQFQSAGNSSALFLTAAAQNLLCLKLAEELGVIISSPWV 305 (562)
Q Consensus 226 ~~s~~a~~~~i~~Pi~~~i~~~~g~~p~~~~~~~~~~~l~l~~~~~~~~~g~~t~~g~~~n~i~~g~~~~~G~~i~~~~~ 305 (562)
..|..|.. .++.|++.++++++|.||. .+...+..++++|....|.+. +.++. ++..| ++ ..
T Consensus 365 ~GSg~a~~-~af~pi~~pia~~lG~~pv---------~~~~~~~~~~~~G~~~sPvs~--~ii~~--ag~a~--~~--~~ 426 (455)
T PRK10654 365 TGSGNAPF-YAFVELIPKLAHSSGINPA---------YLTIPMLQASNLGRTISPVSG--VVVAV--AGMAK--IS--PF 426 (455)
T ss_pred ccchHHHH-HHHHHHHHHHHHHcCCCHH---------HHHHHHHHHHHHhCcCCcchh--hHhhh--hcccC--CC--HH
Confidence 86777665 5899999999999999983 455556667777766555442 22221 11134 56 78
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Q 008532 306 SWFKAACVPALVALLATPLILYKLY 330 (562)
Q Consensus 306 ~w~~~~~~~~li~~~~~~~~~~~~~ 330 (562)
|..|...+|.++..+...+....++
T Consensus 427 ~ivKrt~ip~ii~~iv~~i~~~~~~ 451 (455)
T PRK10654 427 EVVKRTSVPVLVGLLIVIVATEIMV 451 (455)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHh
Confidence 9999988888887777666555554
|
|
| >PRK11339 abgT putative aminobenzoyl-glutamate transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.00031 Score=75.46 Aligned_cols=158 Identities=17% Similarity=0.144 Sum_probs=110.0
Q ss_pred CChHHHHHhccc---hHHHHHHHHHHHH---HHHHHhCHHHHHHHHHHHHhCC---ChhhHHHHHHHHHHHhhhcCCChh
Q 008532 160 LAFPTAFAAFTN---EVIWLIVISFFFA---RGFVKTGLGDRIATYFVKWLGK---STLGLSYGLTFSEALIAPAMPSTT 230 (562)
Q Consensus 160 ~~~~~~~~~~~~---~~i~li~~~~~la---~al~~tGl~~ria~~i~~~~g~---~~~~l~~~l~l~~~~ls~~~~s~~ 230 (562)
.+.+|+.+.+.. +..-.+.-.|..+ ..++.+++.+.++.+..+.+++ +...+..++.++..++..|++|..
T Consensus 327 ks~~Dv~~~m~~g~~~m~~~ivl~F~~Aqfia~F~~snlG~ilav~gA~~L~~~~l~~~pl~i~~ill~a~iNlfI~SgS 406 (508)
T PRK11339 327 RRQADLPHLMIEPMKEMAGFIVMVFPLAQFVAMFNWSNMGKFIAVGLTDILESSGLSGIPAFVGLALLSSFLCMFIASGS 406 (508)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHccccHH
Confidence 466776654433 3333333333444 4567899999999888877432 444566888999999999999999
Q ss_pred hhhhHhHHHHHHHHHHHcCCCCCCCCcchhhhHHHHHhHHhhhhhcccccccchhHHHHHHHHHHcCCcccccHHHHHHH
Q 008532 231 ARAGGVFLPIIKSLSLSAGSKPGDSSSKKLGSYLIQSQFQSAGNSSALFLTAAAQNLLCLKLAEELGVIISSPWVSWFKA 310 (562)
Q Consensus 231 a~~~~i~~Pi~~~i~~~~g~~p~~~~~~~~~~~l~l~~~~~~~~~g~~t~~g~~~n~i~~g~~~~~G~~i~~~~~~w~~~ 310 (562)
+.. +++.|++.++...+|++|+ ....+--.+-+.....+|.. +.-+++.++++++..+++ +++|++.
T Consensus 407 akw-ai~aPIfVPm~~llGisPe---------~tq~AyRiGDs~TNiItPl~-~y~~lil~~~~~y~k~~g--~Gtlis~ 473 (508)
T PRK11339 407 AIW-SILAPIFVPMFMLLGFHPA---------FAQILFRIADSSVLPLAPVS-PFVPLFLGFLQRYKPDAK--LGTYYSL 473 (508)
T ss_pred HHH-HHHHHHHHHHHHHcCCCHH---------HHHHHHHHccchhhhcCCch-HHHHHHHHHHHHhccCCC--HhHHHHH
Confidence 998 5999999999999999874 22233334444455666653 334556777877544577 9999999
Q ss_pred HHHHHHHHHHHHHHHHHHhc
Q 008532 311 ACVPALVALLATPLILYKLY 330 (562)
Q Consensus 311 ~~~~~li~~~~~~~~~~~~~ 330 (562)
++|.++..++........|+
T Consensus 474 mlPysi~~lv~w~~ll~~w~ 493 (508)
T PRK11339 474 VLPYPLIFLVVWLLMLLAWY 493 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999887766665554444
|
|
| >TIGR00791 gntP gluconate transporter | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.00025 Score=76.60 Aligned_cols=171 Identities=13% Similarity=0.113 Sum_probs=111.0
Q ss_pred CCCChHHHHHHHHHHHHHhCCcChHHH---hhccCC---hhHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHhhccCCCch
Q 008532 378 LGIPSVVAAMIGLSILLLLGVLDWDDC---LSEKSA---WDTLAWFAVLVGMAGQLTNLGIVTWMSDSVAKCLQSFSLSW 451 (562)
Q Consensus 378 ~gi~~~~vall~~~ll~~~gvl~~~~~---~~~~i~---w~~l~l~~~~~~l~~~l~~tGi~~~ia~~l~~~~~~~~~~~ 451 (562)
.++++.....+++++..+..-++..|. +.++.. |+..+.+..+..+++.|+++|..|++++.+.+.++....
T Consensus 20 ~k~~~~ial~~~a~~~~l~~g~~~~~~~~~i~~g~g~~~~~iglii~lg~~~g~~m~~sGaa~~ia~~i~~~~g~~r~-- 97 (440)
T TIGR00791 20 FKLNTFVALLVVSFGVGLASGMPLDKVVHSIEAGIGGTLGFLALIVGLGAMLGKLLADSGAAQRIALTLLAKFGKSRV-- 97 (440)
T ss_pred HcccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHhcccch--
Confidence 347776666666666555433443432 223333 788888888899999999999999999999998876532
Q ss_pred HHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhhhhhccccchhhHHhhcCCCCCHH
Q 008532 452 PAAFGVLQASYFLIHYLFASQTGHVGALYSAFLAMHLAAGVPGVLAALALAYNTNLFGAITHYSSGQAAVYYGAGYIDLP 531 (562)
Q Consensus 452 ~~~~~~l~~~~~~~~~~f~S~~a~~~il~Pi~~~la~~~Gv~p~~~~l~l~~~~~~~~~~tP~~s~~n~i~~~~g~i~~~ 531 (562)
...+....+++....|. .....++.|+..+++++.|.|+...+++...+........|...+++.+ .+.-+.+..
T Consensus 98 --~~a~~~~~~ilgi~~f~--~~~~vil~Pi~~~l~~~~g~s~~~~a~~~~~~~~~~~~~vPp~Pg~~~~-a~~~g~~~~ 172 (440)
T TIGR00791 98 --QWAVVIAGLIVGLALFF--EVGFVLLIPLVFSIAAEAKISLLKLGIPMVAALSVAHGFLPPHPGPTAI-ANEYGADIG 172 (440)
T ss_pred --HHHHHHHHHHHhhHHHH--HHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHhceeCCCCccHHHH-HHHhCCCHH
Confidence 12222222222221122 1236689999999999999999987766655443334346766666543 344557899
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 008532 532 DVFKMGFTMALVNAIIWGVTGTFWWKF 558 (562)
Q Consensus 532 d~~k~g~~~~li~~vi~~~v~~~~w~~ 558 (562)
+++.+|++..+...++ .++.|-++
T Consensus 173 ~~~~~gl~~~i~~~i~---~g~~~~~~ 196 (440)
T TIGR00791 173 EVLLYGLIVAIPTVII---AGPLFTKF 196 (440)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 9999999988776432 25555554
|
This family includes known gluconate transporters of E. coli and Bacillus species as well as an idonate transporter from E. coli. |
| >PRK11588 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00035 Score=75.08 Aligned_cols=191 Identities=9% Similarity=0.112 Sum_probs=123.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhcCCChH-----HHHHH-HH-HHHHHh------cCCChHHHHHhccchHHHHHHHHHHH
Q 008532 117 EVSPQAWQLLSIFLSTIAGLVLSPLPVG-----AWAFL-GL-TTSIVT------RTLAFPTAFAAFTNEVIWLIVISFFF 183 (562)
Q Consensus 117 ~ls~~~~~~l~i~~~~i~lw~~~~~p~~-----~~all-~~-~ll~l~------gv~~~~~~~~~~~~~~i~li~~~~~l 183 (562)
++|.+.+..+.+|+.++...+.+....+ ..++. .+ .+..+. |.++++|..+.|....==+..+.+++
T Consensus 281 ~~t~r~klvL~~f~~~~~~~i~Gv~~~gW~~~Eia~~Fl~~giv~G~i~~~~~~~g~~~~~i~~~f~~Ga~~m~~~alii 360 (506)
T PRK11588 281 PFTFGDWLVLLVLTAVMVWVIWGVVVNAWFIPEIASQFFTMGLVIGLIGVVFRLNGMTVNTMASSFTEGARMMLAPALLV 360 (506)
T ss_pred CcChhhHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHhhhhhccCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677788888888887777666543211 12221 11 122222 45688888777655433333333332
Q ss_pred ------HHHH-----HHhCHHHHHHHHHHHHhCC-ChhhHHHHHHHHHHHhhhcCCChhhhhhHhHHHHHHHHHHHcCCC
Q 008532 184 ------ARGF-----VKTGLGDRIATYFVKWLGK-STLGLSYGLTFSEALIAPAMPSTTARAGGVFLPIIKSLSLSAGSK 251 (562)
Q Consensus 184 ------a~al-----~~tGl~~ria~~i~~~~g~-~~~~l~~~l~l~~~~ls~~~~s~~a~~~~i~~Pi~~~i~~~~g~~ 251 (562)
...+ ++....|.+.+...+..++ ++.....+++++..+++.++||..+.+ ++.+|++.++++..|.+
T Consensus 361 g~A~~i~~il~~g~~~~g~iidTIv~~~~~~L~~lp~~~~ai~m~i~~~~lNffIpSgSGqA-aitmPIm~Plad~lGis 439 (506)
T PRK11588 361 GFAKGILLLLGGGEPGDPSVLNTILNSAGGAISGLPDAVSAWFMLLFQSVFNFFVTSGSGQA-ALTMPLMAPLADLVGVN 439 (506)
T ss_pred HHHHHHHHHhhccCccccchHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHeEecChHHHH-HHHHHHHHHHHHHcCCC
Confidence 2345 3444778888888877777 556677788899999999999999998 59999999999999987
Q ss_pred CCCCCcchhhhHHHHHhHHhhhhhcccccccchhHHHHHHHHHHcCCcccccHHHHHHHHHHHHHHHHHHHHHH
Q 008532 252 PGDSSSKKLGSYLIQSQFQSAGNSSALFLTAAAQNLLCLKLAEELGVIISSPWVSWFKAACVPALVALLATPLI 325 (562)
Q Consensus 252 p~~~~~~~~~~~l~l~~~~~~~~~g~~t~~g~~~n~i~~g~~~~~G~~i~~~~~~w~~~~~~~~li~~~~~~~~ 325 (562)
+. ...++--++-+.....+|+.. ...+.+.-++ ++ |.+|+|...|+-++..++....
T Consensus 440 rq---------~avlAfq~GDg~tNlI~Pts~----~lm~~Laia~--Ip--y~kW~Kf~~pl~~i~~v~~~v~ 496 (506)
T PRK11588 440 RQ---------VAVLAFQLGDGFTNIIYPTSA----SLMATLGVCR--VD--FGNWLKFIWRFLLLLFIMSSVV 496 (506)
T ss_pred HH---------HHHHHHHHHhHHHHHhhhhHH----HHHHHHHHhC--CC--HHHHHHHHHHHHHHHHHHHHHH
Confidence 53 344444556655666666532 2222222234 67 9999999999887766655543
|
|
| >PF03553 Na_H_antiporter: Na+/H+ antiporter family; InterPro: IPR018461 A single member of the NhaC family, a protein from Bacillus firmus, has been functionally characterised | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.0012 Score=67.60 Aligned_cols=107 Identities=15% Similarity=0.161 Sum_probs=78.0
Q ss_pred hHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHhhccCCCchHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHcC
Q 008532 412 DTLAWFAVLVGMAGQLTNLGIVTWMSDSVAKCLQSFSLSWPAAFGVLQASYFLIHYLFASQTGHVGALYSAFLAMHLAAG 491 (562)
Q Consensus 412 ~~l~l~~~~~~l~~~l~~tGi~~~ia~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~f~S~~a~~~il~Pi~~~la~~~G 491 (562)
++++++..+.++++.++++|..+.+.+.+.+...+. ........+...+......++.++..+..|++.+++++.|
T Consensus 162 ~~i~i~ila~~l~~i~~~~G~~~~~v~~~~~~~~~~----~~l~~~~~l~~~~~~~~tgs~~~ti~i~~pi~~~l~~~~g 237 (303)
T PF03553_consen 162 PTIIILILAGALGGILEKTGVLDALVNKLLKKIKSP----RSLPAVTFLLSIIISFATGSSWGTIAIMGPIFKPLAEKMG 237 (303)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhcCCc----cHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhc
Confidence 467777778899999999998888888887765432 1222222333333344467888999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhhhhhccccchhhHHh
Q 008532 492 VPGVLAALALAYNTNLFGAITHYSSGQAAVY 522 (562)
Q Consensus 492 v~p~~~~l~l~~~~~~~~~~tP~~s~~n~i~ 522 (562)
.||....-.+.-++..+..+.|.+.......
T Consensus 238 ~~~~~~a~ai~~~~~~g~~l~P~s~~~i~~~ 268 (303)
T PF03553_consen 238 ISPPLLAGAIESGATFGDPLSPWSDTTILSS 268 (303)
T ss_pred ccHHHHHHHHHhhhhhcCCCCcchHHHHHHH
Confidence 9998777777666667788889977655443
|
It is involved in pH homeostasis and sodium extrusion. Members of the NhaC family are found in both Gram-negative bacteria and Gram-positive bacteria.; GO: 0015385 sodium:hydrogen antiporter activity, 0006814 sodium ion transport, 0006885 regulation of pH, 0016021 integral to membrane |
| >TIGR00819 ydaH p-Aminobenzoyl-glutamate transporter family | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00055 Score=73.83 Aligned_cols=157 Identities=15% Similarity=0.067 Sum_probs=111.5
Q ss_pred CChHHHHHhccc------hHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHh--CC-ChhhHHHHHHHHHHHhhhcCCChh
Q 008532 160 LAFPTAFAAFTN------EVIWLIVISFFFARGFVKTGLGDRIATYFVKWL--GK-STLGLSYGLTFSEALIAPAMPSTT 230 (562)
Q Consensus 160 ~~~~~~~~~~~~------~~i~li~~~~~la~al~~tGl~~ria~~i~~~~--g~-~~~~l~~~l~l~~~~ls~~~~s~~ 230 (562)
.+.+|+.+.+.+ +...++...--+...++++++.+.++.+..+.+ .+ +......++.++..++..|++|..
T Consensus 329 k~~~di~~~m~~g~~~m~~~~vli~~A~~f~~~f~~s~i~~~ia~~~A~~L~~~~l~~~~~~i~~~l~~~~iNlfI~S~S 408 (513)
T TIGR00819 329 RGEADLPHAMAEPMKELAGFIVIIFFAAQFVAFFNWSNIGKFIAVGGADFLEESGLAGIPAFIGFALICAFICLFIASAS 408 (513)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHheeccHH
Confidence 577777665543 233333334444567899999999999998877 23 556688889999999999999999
Q ss_pred hhhhHhHHHHHHHHHHHcCCCCCCCCcchhhhHHHHHhHHhhhhhcccccccchhHHHHHHHHHHcCCcccccHHHHHHH
Q 008532 231 ARAGGVFLPIIKSLSLSAGSKPGDSSSKKLGSYLIQSQFQSAGNSSALFLTAAAQNLLCLKLAEELGVIISSPWVSWFKA 310 (562)
Q Consensus 231 a~~~~i~~Pi~~~i~~~~g~~p~~~~~~~~~~~l~l~~~~~~~~~g~~t~~g~~~n~i~~g~~~~~G~~i~~~~~~w~~~ 310 (562)
+.. +++.|++.+++..+|++|+ ....+--++-+.....+|+.. -=+++.++++++..+.+ .++....
T Consensus 409 gkw-al~aPI~vPm~~~lGisp~---------~t~~AyriGDs~tNiItP~~~-y~~lil~~~~~y~k~~g--~Gtl~s~ 475 (513)
T TIGR00819 409 AIW-AILAPIFVPMFMLAGFAPA---------FAQAAFRIADSSTLIIAPMMP-FFGLFLAFLMKYKKDAG--LGTLISL 475 (513)
T ss_pred HHH-HHHHHHHHHHHHHcCCCHH---------HHHHHHHHhchHHHhhccCcc-hHHHHHHHHHHhccCCc--HHHHHHH
Confidence 998 5999999999999999874 233333344444455555432 12566777887665677 8899999
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 008532 311 ACVPALVALLATPLILYKL 329 (562)
Q Consensus 311 ~~~~~li~~~~~~~~~~~~ 329 (562)
++|.++..++........|
T Consensus 476 mlPysi~~l~~w~~l~~~w 494 (513)
T TIGR00819 476 MLPYPAFFLIAWIALFCAW 494 (513)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999887766655544333
|
The p-Aminobenzoyl-glutamate transporter family includes two transporters, the AbgT (YdaH) protein of E. coli and MtrF of Neisseria gonorrhoea. AbgT is apparently cryptic in wild type cells, but when expressed on a high copy number plasmid, or when expressed at higher levels due to mutation, it allows utilization of p-aminobenzoyl-glutamate as a source of p-aminobenzoate for p-aminobenzoate auxotrophs. p-Aminobenzoate is a constituent of and a precursor for the biosynthesis of folic acid. |
| >PF02447 GntP_permease: GntP family permease; InterPro: IPR003474 This is a family of integral membrane permeases that are involved in gluconate uptake | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.0012 Score=70.50 Aligned_cols=170 Identities=18% Similarity=0.150 Sum_probs=110.6
Q ss_pred CCChHHHHHHHHHHHHHhCCcChHHHhhccCC-------hhHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHhhccCCCch
Q 008532 379 GIPSVVAAMIGLSILLLLGVLDWDDCLSEKSA-------WDTLAWFAVLVGMAGQLTNLGIVTWMSDSVAKCLQSFSLSW 451 (562)
Q Consensus 379 gi~~~~vall~~~ll~~~gvl~~~~~~~~~i~-------w~~l~l~~~~~~l~~~l~~tGi~~~ia~~l~~~~~~~~~~~ 451 (562)
++++-..-+++.+..-+..-++.+|..+ .+. -++-+.++-+..+|+.++++|..|.+++.+.+.++.....+
T Consensus 21 klhpF~aLl~~al~~gl~~G~~~~~i~~-~i~~GfG~tl~~igivI~lG~~iG~~l~~SGaa~~IA~~l~~~~G~k~~~~ 99 (441)
T PF02447_consen 21 KLHPFLALLIVALIVGLLAGMPPEEIVK-SITKGFGSTLGSIGIVIALGAMIGKLLEESGAAERIANTLLKKFGEKRAPL 99 (441)
T ss_pred hhhHHHHHHHHHHHHHHHcCCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHcCCCcccH
Confidence 3555444444444444444466666543 222 23445556667788999999999999999999988764322
Q ss_pred HHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhhhhhccccchhhHHhhcCCCCCHH
Q 008532 452 PAAFGVLQASYFLIHYLFASQTGHVGALYSAFLAMHLAAGVPGVLAALALAYNTNLFGAITHYSSGQAAVYYGAGYIDLP 531 (562)
Q Consensus 452 ~~~~~~l~~~~~~~~~~f~S~~a~~~il~Pi~~~la~~~Gv~p~~~~l~l~~~~~~~~~~tP~~s~~n~i~~~~g~i~~~ 531 (562)
.. .+..+++..-.|.+ ....++.|+..++++..|.|...+.+++..+......+.|+.-++... .+.-+.|..
T Consensus 100 --A~--~i~g~iv~IPvF~d--v~~viL~Pl~~~la~~~~~s~~~~~~~l~~gl~~~h~lvPPtPgpla~-a~~lg~dlG 172 (441)
T PF02447_consen 100 --AL--AITGFIVGIPVFFD--VGFVILAPLAFSLARKTGKSLLYLALPLAAGLSVTHALVPPTPGPLAA-AGALGADLG 172 (441)
T ss_pred --HH--HHHHHHhhhHHHHH--HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhhccCCCCcHHHH-HHHhCCChh
Confidence 22 22233333223433 456899999999999999999988888777665445566664333333 344457999
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHh
Q 008532 532 DVFKMGFTMALVNAIIWGVTGTFWWKFL 559 (562)
Q Consensus 532 d~~k~g~~~~li~~vi~~~v~~~~w~~l 559 (562)
+++-+|++.++...++ .++.|.++.
T Consensus 173 ~~il~Gl~vaip~~~i---ag~~~~~~~ 197 (441)
T PF02447_consen 173 LVILYGLIVAIPAMLI---AGPLYGRFI 197 (441)
T ss_pred HHHHHhHHHHHHHHHH---HHHHHHHHh
Confidence 9999999988877655 344555554
|
Escherichia coli contains several members of this family including GntU, a low affinity transporter [] and GntT, a high affinity transporter [].; GO: 0015128 gluconate transmembrane transporter activity, 0035429 gluconate transmembrane transport, 0016020 membrane |
| >COG1288 Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00071 Score=70.28 Aligned_cols=234 Identities=17% Similarity=0.215 Sum_probs=152.0
Q ss_pred cccccCCCCCCCCCCCCCCCcccchhHHHHHHHHHHH-HHHhcC----CCC-----------------------CCCHHH
Q 008532 71 SQNDTASTVPPTNLPSPPPPRGAKLLPFVISISIGLI-LRFLVP----KPV-----------------------EVSPQA 122 (562)
Q Consensus 71 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~-~~~~~p----~p~-----------------------~ls~~~ 122 (562)
|-|..|+|...... ..+...|...|++..+..+. +||+.. -|+ +++...
T Consensus 199 F~~~IAq~iAGip~---~sG~~~Riv~~v~~~~~~i~y~~~Ya~KvkkdP~~S~v~~~~~e~r~~f~~~~~~~~~Ft~~~ 275 (481)
T COG1288 199 FATVIAQNIAGIPF---LSGMGLRIVVWVVFTLISIIYVYWYASKVKKDPTLSLVYEDDEEFRETFKVEDSGERPFTFRD 275 (481)
T ss_pred hHHHHHhhhcCCcc---cccchHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccchHHHHHHhhhccccccccchhh
Confidence 34555555544222 22456777778776655543 233332 132 467778
Q ss_pred HHHHHHHHHHHHHHhhcCC------ChHHHHHHHHHH-HHHhcCCChHHHHHhccchHHHHHHHHHHHH--HH----HHH
Q 008532 123 WQLLSIFLSTIAGLVLSPL------PVGAWAFLGLTT-SIVTRTLAFPTAFAAFTNEVIWLIVISFFFA--RG----FVK 189 (562)
Q Consensus 123 ~~~l~i~~~~i~lw~~~~~------p~~~~all~~~l-l~l~gv~~~~~~~~~~~~~~i~li~~~~~la--~a----l~~ 189 (562)
+.+|.+|.++.++.+.+.. |.....++...+ ..+.+.++-+|..+.|.+..-=++.+.++++ ++ +++
T Consensus 276 klvL~lf~l~f~~mI~GV~~~GW~f~eiA~~Fl~mgIiig~I~glse~~~~~sF~~Ga~~lv~~aLiiGiARgI~lim~~ 355 (481)
T COG1288 276 KLVLLLFTLTFVIMIWGVIVLGWWFPEIAAQFLAMGIIIGLIGGLSENDIASSFIEGASDLLGVALIIGLARGINLIMDD 355 (481)
T ss_pred hHHHHHHHHHHHHHHHHhhhhceehHHHHHHHHHHHHHHHHHhccchhHHHHHHHHhHHHHHHHHHHHHhhhceEEEecC
Confidence 8889998888777766553 232333333322 2334568899999988887777777777765 33 445
Q ss_pred hCHHHHHHHHHHHHhCC-ChhhHHHHHHHHHHHhhhcCCChhhhhhHhHHHHHHHHHHHcCCCCCCCCcchhhhHHHHHh
Q 008532 190 TGLGDRIATYFVKWLGK-STLGLSYGLTFSEALIAPAMPSTTARAGGVFLPIIKSLSLSAGSKPGDSSSKKLGSYLIQSQ 268 (562)
Q Consensus 190 tGl~~ria~~i~~~~g~-~~~~l~~~l~l~~~~ls~~~~s~~a~~~~i~~Pi~~~i~~~~g~~p~~~~~~~~~~~l~l~~ 268 (562)
.-+.|-+-++..+...+ +.....++..+...+++.++||....+ ++-+|++.++++-.|.+++ ....+.
T Consensus 356 g~i~dTiL~~~~~~lsgls~~~f~i~mli~~~~l~f~VpS~SG~A-~ltMPImAPLaD~vgv~Rq---------vvV~Af 425 (481)
T COG1288 356 GMILDTILNYLASLLSGLSSAVFAIGMLIFQALLNFFVPSGSGLA-VLTMPIMAPLADLVGVPRQ---------VVVLAF 425 (481)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHheEEEeCCCchh-HhhchhhhhhHHhcCCCHH---------Hhhhhh
Confidence 55688888888888766 666677778888999999999999887 5889999999999988642 233444
Q ss_pred HHhhhhhcccccccchhHHHHHHHHHHcCCcccccHHHHHHHHHHHHHHHHHHHHHH
Q 008532 269 FQSAGNSSALFLTAAAQNLLCLKLAEELGVIISSPWVSWFKAACVPALVALLATPLI 325 (562)
Q Consensus 269 ~~~~~~~g~~t~~g~~~n~i~~g~~~~~G~~i~~~~~~w~~~~~~~~li~~~~~~~~ 325 (562)
-.+.......+|++ -+..+.++-.+ ++ |..|+|...|+..+..++...+
T Consensus 426 q~g~G~~n~I~PTS----g~~ma~La~~~--i~--y~~W~Kfv~pl~~i~~li~~~~ 474 (481)
T COG1288 426 QLGDGFSNIIAPTS----GLLMATLAMAR--VP--YGTWLKFVAPLLGILFLISSVV 474 (481)
T ss_pred hhcchhhheecCch----HHHHHHHHHcc--CC--hhHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555553 22333333333 67 8899999999876665555443
|
|
| >PRK10034 fructuronate transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.0021 Score=68.86 Aligned_cols=163 Identities=13% Similarity=0.090 Sum_probs=109.3
Q ss_pred CCCChHHHHHHHHHHHHHhCCcChHHHhh---cc---CChhHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHhhccCCCch
Q 008532 378 LGIPSVVAAMIGLSILLLLGVLDWDDCLS---EK---SAWDTLAWFAVLVGMAGQLTNLGIVTWMSDSVAKCLQSFSLSW 451 (562)
Q Consensus 378 ~gi~~~~vall~~~ll~~~gvl~~~~~~~---~~---i~w~~l~l~~~~~~l~~~l~~tGi~~~ia~~l~~~~~~~~~~~ 451 (562)
.++++....+++.++..+..-++.+|..+ ++ .-++..+.+.-+..+++.++++|..+.+++.+.+.+++...
T Consensus 23 ~k~~~fialli~al~~gl~~Gm~~~~~~~~i~~G~g~~~~si~lii~lGailG~lLe~SGaa~~Ia~~i~~~~G~kr~-- 100 (447)
T PRK10034 23 FKINSMVALLVAALSVGMLAGMDLMKLLHTMKAGFGNTLGELAIIVVFGAVIGKLMVDSGAAHQIAHTLLARLGLRYV-- 100 (447)
T ss_pred hCccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHhCccch--
Confidence 34777776666777666665555555432 11 22556666677777999999999999999999999877542
Q ss_pred HHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhhhhhccccchhhHHhhcCCCCCHH
Q 008532 452 PAAFGVLQASYFLIHYLFASQTGHVGALYSAFLAMHLAAGVPGVLAALALAYNTNLFGAITHYSSGQAAVYYGAGYIDLP 531 (562)
Q Consensus 452 ~~~~~~l~~~~~~~~~~f~S~~a~~~il~Pi~~~la~~~Gv~p~~~~l~l~~~~~~~~~~tP~~s~~n~i~~~~g~i~~~ 531 (562)
...+.+..+.+..-.| -+....++.|+..++++..+.|+...+++++.+......+.|+.-++.. +.+.-+.+..
T Consensus 101 --~~a~~l~g~llGi~vF--~dv~~v~laPi~~~lak~~~~s~~~~~~~l~~gl~~~h~lvPP~Pgpla-~a~~l~a~lG 175 (447)
T PRK10034 101 --QLSVIIIGLIFGLAMF--YEVAFIMLAPLVIVIAAEAKIPFLKLAIPAVAAATTAHSLFPPQPGPVA-LVNAYGADMG 175 (447)
T ss_pred --HHHHHHHHHHHhhHHH--HHhHHHhhHHHHHHHHHHhCcCHHHHHHHHHHHHHHhhcccCCCCcHHH-HHHHhCCcHH
Confidence 1222222222211112 2345678999999999999999999888877776655566666433333 3344467999
Q ss_pred HHHHHhHHHHHHHHHH
Q 008532 532 DVFKMGFTMALVNAII 547 (562)
Q Consensus 532 d~~k~g~~~~li~~vi 547 (562)
+++-+|.+..+...++
T Consensus 176 ~~il~Gl~v~ip~~~~ 191 (447)
T PRK10034 176 MVYIYGVLVTIPSVIC 191 (447)
T ss_pred HHHHHhhHHHHHHHHH
Confidence 9999998888877433
|
|
| >TIGR00771 DcuC c4-dicarboxylate anaerobic carrier family protein | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.001 Score=70.31 Aligned_cols=128 Identities=21% Similarity=0.169 Sum_probs=94.9
Q ss_pred chHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhhhcCCChhhhhhHhHHHHHHHHHHHcCC
Q 008532 171 NEVIWLIVISFFFARGFVKTGLGDRIATYFVKWLGKSTLGLSYGLTFSEALIAPAMPSTTARAGGVFLPIIKSLSLSAGS 250 (562)
Q Consensus 171 ~~~i~li~~~~~la~al~~tGl~~ria~~i~~~~g~~~~~l~~~l~l~~~~ls~~~~s~~a~~~~i~~Pi~~~i~~~~g~ 250 (562)
..+..++++..+++..++.+|..+.+++.+.+. +.++....+...+...+++.++.+..+.. ..+.|++.++++++|.
T Consensus 258 ~~v~~iI~aA~vF~~~L~~~Gi~~~l~~~l~~~-~~~~~~~ll~~~l~~~~lg~~~~s~~a~~-~~~~PIl~pia~~~Gi 335 (388)
T TIGR00771 258 ANVVGLIVAASVFAAGLKTIGAVDAAISFAKES-GLGNIFVMWGATIGPFLMALITGSGNAPF-IAFNTAIPPHAVELGY 335 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHHhcCcHHHH-HHHHHHHHHHHHHcCC
Confidence 457888999999999999999999999999877 45677777777778888999996544444 5899999999999999
Q ss_pred CCCCCCcchhhhHHHHHhHHhhhhhcccccccchhHHH-HHHHHHHcCCcccccHHHHHHHHHHHHHHH
Q 008532 251 KPGDSSSKKLGSYLIQSQFQSAGNSSALFLTAAAQNLL-CLKLAEELGVIISSPWVSWFKAACVPALVA 318 (562)
Q Consensus 251 ~p~~~~~~~~~~~l~l~~~~~~~~~g~~t~~g~~~n~i-~~g~~~~~G~~i~~~~~~w~~~~~~~~li~ 318 (562)
||. .+......+..+|....|.| .|.. ..+. +| ++ ..|..|..+||.++.
T Consensus 336 dpv---------~~gi~~~i~~~iG~~tpPv~--~~l~v~~gi---a~--v~--~~~i~k~~~~p~~~~ 386 (388)
T TIGR00771 336 THV---------NLGMPMAIAGALGRTASPIA--GVVVVCAGL---AM--VS--PFEVVKRTAPPMIVG 386 (388)
T ss_pred CHH---------HHHHHHHHHHHHhCcCCcHH--HHHHHHHhh---cC--CC--HHHHHHHHHHHHHHh
Confidence 873 23333444555565555555 3333 3333 23 56 889999999998764
|
catalyzing fumarate-succinate exchange and fumarate uptake. |
| >PF03606 DcuC: C4-dicarboxylate anaerobic carrier; InterPro: IPR018385 Escherichia coli contains four different secondary carriers (DcuA, DcuB, DcuC, and DctA) for C4-dicarboxylates [, , , ] DcuA is used for aerobic growth on C4-dicarboxylates [, ], whereas the Dcu carriers (encoded by the dcuA, dcuB, and dcuC genes) are used under anaerobic conditions and form a distinct family of carriers [, , , , , ] | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00089 Score=72.68 Aligned_cols=191 Identities=15% Similarity=0.109 Sum_probs=118.2
Q ss_pred CHHHHHHHHHHHHHHHHHhhc----C----CCh---HHHHHHHHHHHHHhc---CCChHHHHHhccc---hH--HHHHHH
Q 008532 119 SPQAWQLLSIFLSTIAGLVLS----P----LPV---GAWAFLGLTTSIVTR---TLAFPTAFAAFTN---EV--IWLIVI 179 (562)
Q Consensus 119 s~~~~~~l~i~~~~i~lw~~~----~----~p~---~~~all~~~ll~l~g---v~~~~~~~~~~~~---~~--i~li~~ 179 (562)
+.+.+..+.+++..+++.+.+ . +.. ....+....+.-+.+ ..+.+|..+.|-+ +. .-++++
T Consensus 250 ~~~~~~~~~~~~l~~~~li~g~~~~~~~~~~~~~~~~~~fl~~~ii~~~i~~~~~~~~~~~~~~F~~G~~~~~~~a~vVg 329 (465)
T PF03606_consen 250 TKRPKLYLLLPVLPFVLLIYGFSFVIIKIKWYFPEIAALFLIIGIIIGLIRHRSGKSPNEIVKAFFKGMGDMLSFALVVG 329 (465)
T ss_pred ccccceeehHHHHHHHHHHhchhhhhccccccHHHHHHHHHHHHHHHHHHHhhccCCHhHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666655555543 1 222 222333333334445 6777776665522 22 222222
Q ss_pred HHHHH-HHHHHhCHHHHHHHHHHHHhCC-ChhhHHHHHHHHHHHhhhcCCChhhhhhHhHHHHHHHHHHHcCCCCCCCCc
Q 008532 180 SFFFA-RGFVKTGLGDRIATYFVKWLGK-STLGLSYGLTFSEALIAPAMPSTTARAGGVFLPIIKSLSLSAGSKPGDSSS 257 (562)
Q Consensus 180 ~~~la-~al~~tGl~~ria~~i~~~~g~-~~~~l~~~l~l~~~~ls~~~~s~~a~~~~i~~Pi~~~i~~~~g~~p~~~~~ 257 (562)
...=+ ..+++.+..+-+.+.+....++ +......+..+...+++.+++|..+.+ ....|++-++++..|.++
T Consensus 330 la~ai~v~~~~~~i~~tI~~~~~~~l~~~~~~~~~~~m~~~~~~~~fli~SGsg~a-~~~mpim~plad~~Gi~~----- 403 (465)
T PF03606_consen 330 LARAISVFMEGGKIIDTIVHLLSNLLSGLPGVIAAIGMFLIQFLINFLIGSGSGQA-AAFMPIMPPLADLLGITR----- 403 (465)
T ss_pred HHHHHHHHHcCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHeeecCCchHHH-HHHHHhHHHHHHHcCCCH-----
Confidence 22212 2334445566666666665544 445566677778889999999999987 599999999999999975
Q ss_pred chhhhHHHHHhHHhhhhhcccccccchhHHHHHHHHHHcCCcccccHHHHHHHHHHHHHHHHHHHHHHHH
Q 008532 258 KKLGSYLIQSQFQSAGNSSALFLTAAAQNLLCLKLAEELGVIISSPWVSWFKAACVPALVALLATPLILY 327 (562)
Q Consensus 258 ~~~~~~l~l~~~~~~~~~g~~t~~g~~~n~i~~g~~~~~G~~i~~~~~~w~~~~~~~~li~~~~~~~~~~ 327 (562)
....++..++++++-..+|++.. ..+.++-+| ++ +.+|+|...|+.++..++..+..+
T Consensus 404 ----q~~vla~q~g~gl~n~isPtsg~----~m~~l~ia~--V~--~~~w~K~~~~~~~~~~v~~~v~l~ 461 (465)
T PF03606_consen 404 ----QTAVLAFQFGDGLGNSISPTSGV----LMAVLGIAK--VS--YGKWVKRTWPPMLIWFVLSIVFLI 461 (465)
T ss_pred ----HHHHHHHHHHHHHHhhccchHHH----HHHHhhhcC--CC--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677888888888876432 222222234 67 999999999998887776665543
|
Each of the Dcu carriers is able to catalyze the uptake, antiport, and possibly also efflux of C4-dicarboxylates. DcuB is the major C4-dicarboxylate carrier for fumarate respiration with high fumarate-succinate exchange activity. It is synthesized only in the absence of oxygen and nitrate and in the presence of C4-dicarboxylates [, , , ]. DcuA is expressed constitutively in aerobic and anaerobic growth and can substitute for DcuB [, ]. These proteins are members of the C4-dicarboxylate Uptake C (DcuC) family. DcuC has 12 GES predicted transmembrane regions, is induced only under anaerobic conditions, and is not repressed by glucose. DcuC may therefore function as a succinate efflux system during anaerobic glucose fermentation. However, when overexpressed, it can replace either DcuA or DcuB in catalyzing fumarate-succinate exchange and fumarate uptake [, ]. DcuC shows the same transport modes as DcuA and DcuB (exchange, uptake, and presumably efflux of C4-dicarboxylates) [].; GO: 0016021 integral to membrane |
| >PRK09821 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.0034 Score=67.31 Aligned_cols=170 Identities=13% Similarity=0.042 Sum_probs=105.4
Q ss_pred CCChHHHHHHHHHHHHHhCCcChHHHhh---ccCC---hhHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHhhccCCCchH
Q 008532 379 GIPSVVAAMIGLSILLLLGVLDWDDCLS---EKSA---WDTLAWFAVLVGMAGQLTNLGIVTWMSDSVAKCLQSFSLSWP 452 (562)
Q Consensus 379 gi~~~~vall~~~ll~~~gvl~~~~~~~---~~i~---w~~l~l~~~~~~l~~~l~~tGi~~~ia~~l~~~~~~~~~~~~ 452 (562)
++++-...+++.++..+..-++.+|..+ +++. -+..++++.+..+|..++++|..|.+++.+.+.++.....
T Consensus 25 kl~pf~alii~al~~gl~~G~~~~~i~~~i~~G~g~tl~~~~lii~lGa~~G~~le~SGaa~~Ia~~ii~~~G~k~~~-- 102 (454)
T PRK09821 25 KVQPFVALLLVSLLVALAAGIPAGEVGKVMIAGMGGVLGSVTIIIGLGAMLGRMIEHSGGAESLANYFTRKLGDKRTI-- 102 (454)
T ss_pred CccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCchH--
Confidence 4677665555555555544455566432 1111 2345556666778899999999999999999998875421
Q ss_pred HHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhhhhhccccchhhHHhhcCCCCCHHH
Q 008532 453 AAFGVLQASYFLIHYLFASQTGHVGALYSAFLAMHLAAGVPGVLAALALAYNTNLFGAITHYSSGQAAVYYGAGYIDLPD 532 (562)
Q Consensus 453 ~~~~~l~~~~~~~~~~f~S~~a~~~il~Pi~~~la~~~Gv~p~~~~l~l~~~~~~~~~~tP~~s~~n~i~~~~g~i~~~d 532 (562)
..+.+..+++..-.|. +....++.|+..+++++.|.|+..++++++.+.+....+.|..-++...+ +.-+.|...
T Consensus 103 --~ai~i~~~ilgIpvF~--dv~fvil~Pl~~~l~kk~~~~~~~l~l~~~~~l~~~h~~vPP~Pgp~~~a-~~Lg~d~g~ 177 (454)
T PRK09821 103 --AALTLAAFILGIPVFF--DVGFIILAPIIYGFAKVAKVSPLKFGLPVAGIMLTVHVALPPHPGPVAAA-GLLHADIGW 177 (454)
T ss_pred --HHHHHHHHHHhhHHHH--HHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHcccccCCChHHHHHH-HHhCCCHHH
Confidence 2222222222222233 35667999999999999999988876665432222333445433333333 444578999
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHh
Q 008532 533 VFKMGFTMALVNAIIWGVTGTFWWKFL 559 (562)
Q Consensus 533 ~~k~g~~~~li~~vi~~~v~~~~w~~l 559 (562)
..-+|+..++...++ ++.|-++.
T Consensus 178 ~~l~Giivaip~~i~----g~~~~~~~ 200 (454)
T PRK09821 178 LTIIGIAISIPVGIV----GYFAAKII 200 (454)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHH
Confidence 999999888887654 44454443
|
|
| >TIGR00931 antiport_nhaC Na+/H+ antiporter NhaC | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0065 Score=65.58 Aligned_cols=153 Identities=12% Similarity=0.030 Sum_probs=102.8
Q ss_pred CcChHHHhhccCC-----hhHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHhhccCCCchHHHHHHHHHHHHHHHHHhchh
Q 008532 398 VLDWDDCLSEKSA-----WDTLAWFAVLVGMAGQLTNLGIVTWMSDSVAKCLQSFSLSWPAAFGVLQASYFLIHYLFASQ 472 (562)
Q Consensus 398 vl~~~~~~~~~i~-----w~~l~l~~~~~~l~~~l~~tGi~~~ia~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~f~S~ 472 (562)
..+|+|..+.-++ ...++.+.-.-.+.+....+|..+.+.+.-.+..+. ..+.....++..+..+...|.
T Consensus 49 ~~~~~~~~~~~~~g~~~~~~~i~il~~~G~~~~~~~~~g~i~~l~~~g~~~i~p-----~~~~~~~Fl~~~~~s~~~Gss 123 (454)
T TIGR00931 49 GVGYNDLESAIIDGIKIGIKAILILALVGILIGTWIMGGTVPTLIYYGLSIISP-----EWFAVSTLLICMIVSSFTGTS 123 (454)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHhhcCH-----HHHHHHHHHHHHHHHHHhccH
Confidence 4678875432111 233333333344567788899998887766665432 223333333444445567888
Q ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhhhhhccccchhhHHhhcCCCCCHHHHHHHhHHHHHHHHHHHHHHH
Q 008532 473 TGHVGALYSAFLAMHLAAGVPGVLAALALAYNTNLFGAITHYSSGQAAVYYGAGYIDLPDVFKMGFTMALVNAIIWGVTG 552 (562)
Q Consensus 473 ~a~~~il~Pi~~~la~~~Gv~p~~~~l~l~~~~~~~~~~tP~~s~~n~i~~~~g~i~~~d~~k~g~~~~li~~vi~~~v~ 552 (562)
.++...+.|++.++++.+|+||...+-++.-++.++....|.+...|...... +.+..|.+|.-.+.++...++..++
T Consensus 124 ~gt~~~~g~~l~~i~~~~g~~~~~~agai~sGa~fGD~~sP~Sdtt~l~a~~~-~~~~~~~v~~~~~~~~~a~~i~~v~- 201 (454)
T TIGR00931 124 WGTVGTIGVAMMGIGTGLGIDLAIAAGAVVCGAYFGDKLSPLSDTTNFASGIV-GVDLFDHIRHLLYTTVPSFVITAIL- 201 (454)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHHHHHH-
Confidence 89999999999999999999988766666556655667899998888655444 4699999999999998888776554
Q ss_pred HHHHH
Q 008532 553 TFWWK 557 (562)
Q Consensus 553 ~~~w~ 557 (562)
|.+|.
T Consensus 202 ~~i~g 206 (454)
T TIGR00931 202 FLVIG 206 (454)
T ss_pred HHHHh
Confidence 44443
|
A single member of the NhaC family, a protein from Bacillus firmus, has been functionally characterized.It is involved in pH homeostasis and sodium extrusion. Members of the NhaC family are found in both Gram-negative bacteria and Gram-positive bacteria. |
| >COG2610 GntT H+/gluconate symporter and related permeases [Carbohydrate transport and metabolism / Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0043 Score=65.89 Aligned_cols=162 Identities=15% Similarity=0.075 Sum_probs=102.8
Q ss_pred CCChHHHHHHHHHHHHHhCCcChHHHh---hccCC---hhHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHhhccCCCchH
Q 008532 379 GIPSVVAAMIGLSILLLLGVLDWDDCL---SEKSA---WDTLAWFAVLVGMAGQLTNLGIVTWMSDSVAKCLQSFSLSWP 452 (562)
Q Consensus 379 gi~~~~vall~~~ll~~~gvl~~~~~~---~~~i~---w~~l~l~~~~~~l~~~l~~tGi~~~ia~~l~~~~~~~~~~~~ 452 (562)
++++-....++.++..+.+-++.++.. .+++. -.....++-+-.+|+.++++|..+.+++.+.+.++....
T Consensus 22 kv~~flal~l~al~~gl~~Gm~~~~i~~~i~~G~ggtlg~i~~Vi~lGam~GkLle~sGaA~~IA~tii~~~G~kr~--- 98 (442)
T COG2610 22 KVHPFLALLLVALLVGLLGGMPLLKVVGTIMKGFGGTLGSLALVIGLGAMLGKLLEDSGAAESIADTLIRKFGEKRA--- 98 (442)
T ss_pred hhhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhCcchH---
Confidence 356655555555544444334444433 22332 223344444566889999999999999999999887532
Q ss_pred HHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhhhhhccccchhhHHhhcCCCCCHHH
Q 008532 453 AAFGVLQASYFLIHYLFASQTGHVGALYSAFLAMHLAAGVPGVLAALALAYNTNLFGAITHYSSGQAAVYYGAGYIDLPD 532 (562)
Q Consensus 453 ~~~~~l~~~~~~~~~~f~S~~a~~~il~Pi~~~la~~~Gv~p~~~~l~l~~~~~~~~~~tP~~s~~n~i~~~~g~i~~~d 532 (562)
.+.+.+..+++.. - .+-.....++.|+..++++..|.+...+..+++-+........|++.+|...+- .-+.+...
T Consensus 99 -~~Al~l~g~i~~~-~-vF~dv~~v~l~Pia~alak~~~is~~~i~v~la~g~~~~h~~vpP~Pgpia~a~-~~~a~~g~ 174 (442)
T COG2610 99 -LLALVLAGLILGI-P-VFFDVGFVLLIPLAFALAKEAGISLLKIAVPLAAGLSVTHMFVPPHPGPIAAAG-PFGADIGT 174 (442)
T ss_pred -HHHHHHHHHHHhh-h-HHhhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcccCCCCCchhhhhh-hcCcchhH
Confidence 2222222222222 1 344667889999999999999999998888877776545666677666654432 23346778
Q ss_pred HHHHhHHHHHHHHHH
Q 008532 533 VFKMGFTMALVNAII 547 (562)
Q Consensus 533 ~~k~g~~~~li~~vi 547 (562)
..-+|....+...++
T Consensus 175 ~il~g~ivaip~~~i 189 (442)
T COG2610 175 VILYGLIVAIPTVII 189 (442)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888888887775433
|
|
| >PRK10472 low affinity gluconate transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.0055 Score=65.52 Aligned_cols=162 Identities=15% Similarity=0.045 Sum_probs=108.5
Q ss_pred CCChHHHHHHHHHHHHHhCCcChHHHhh---ccCC--h-hHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHhhccCCCchH
Q 008532 379 GIPSVVAAMIGLSILLLLGVLDWDDCLS---EKSA--W-DTLAWFAVLVGMAGQLTNLGIVTWMSDSVAKCLQSFSLSWP 452 (562)
Q Consensus 379 gi~~~~vall~~~ll~~~gvl~~~~~~~---~~i~--w-~~l~l~~~~~~l~~~l~~tGi~~~ia~~l~~~~~~~~~~~~ 452 (562)
++++....+++.++..+..-++.+|..+ ++.. + .+...+.-+..+++.++++|..+.+++.+.+.+++...
T Consensus 25 kl~~fialli~Alivgl~~Gmp~~~~~~~i~~G~g~tlg~i~~iI~lGailG~lLe~SGaa~~IA~~i~~~fG~kr~--- 101 (445)
T PRK10472 25 RMHAFVALMVVSMGAGLFSGMPLDKIAATMEKGMGGTLGFLAVVVALGAMFGKILHETGAVDQIAVKMLKSFGHSRA--- 101 (445)
T ss_pred CccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHcCcccH---
Confidence 4777776676777666665555555432 1122 2 23344455566889999999999999999999876542
Q ss_pred HHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhhhhhccccchhhHHhhcCCCCCHHH
Q 008532 453 AAFGVLQASYFLIHYLFASQTGHVGALYSAFLAMHLAAGVPGVLAALALAYNTNLFGAITHYSSGQAAVYYGAGYIDLPD 532 (562)
Q Consensus 453 ~~~~~l~~~~~~~~~~f~S~~a~~~il~Pi~~~la~~~Gv~p~~~~l~l~~~~~~~~~~tP~~s~~n~i~~~~g~i~~~d 532 (562)
...+.+..+++..-.| -+....++.|+..++++..|.|...++++++.+......+.|+.-+|.+ +.+.-+.|..+
T Consensus 102 -~~A~~l~g~iv~iPvF--~dv~fvil~Pl~~~la~~~~~s~~~~~~~l~~gl~~~H~~vPP~Pgp~a-~a~~l~adlG~ 177 (445)
T PRK10472 102 -HYAIGLAGLICALPLF--FEVAIVLLISVAFSMARHTGTNLVKLVIPLFAGVAAAAAFLLPGPAPML-LASQMNADFGW 177 (445)
T ss_pred -HHHHHHHHHHHhhHHH--HhhHHHHhHHHHHHHHHHHCCChHHHHHHHHHHHHhcccccCCCcHHHH-HHHHhCCCHHH
Confidence 2222333332222223 3556779999999999999999998888887775545566666433333 33444679999
Q ss_pred HHHHhHHHHHHHHHH
Q 008532 533 VFKMGFTMALVNAII 547 (562)
Q Consensus 533 ~~k~g~~~~li~~vi 547 (562)
++-+|+...+...++
T Consensus 178 ~il~Glivaip~~~i 192 (445)
T PRK10472 178 MILIGLCAAIPGMII 192 (445)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999888877654
|
|
| >PRK14984 high-affinity gluconate transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0049 Score=65.72 Aligned_cols=161 Identities=11% Similarity=0.112 Sum_probs=105.9
Q ss_pred CCChHHHHHHHHHHHHHhCCcChHHHhhccCC-------hhHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHhhccCCCch
Q 008532 379 GIPSVVAAMIGLSILLLLGVLDWDDCLSEKSA-------WDTLAWFAVLVGMAGQLTNLGIVTWMSDSVAKCLQSFSLSW 451 (562)
Q Consensus 379 gi~~~~vall~~~ll~~~gvl~~~~~~~~~i~-------w~~l~l~~~~~~l~~~l~~tGi~~~ia~~l~~~~~~~~~~~ 451 (562)
++++-...+++.++..+..-++.+|..+ .+. -+..+.++-+-.+|+.++++|..+.+++.+.+.++....
T Consensus 21 Kl~pf~alli~a~~~gl~~Gm~~~~~~~-~i~~G~g~~l~si~iii~lGai~G~~l~~SGaA~~IA~~ii~~~G~kr~-- 97 (438)
T PRK14984 21 KMNGFIALVLVALAVGLMQGMPLDKVIG-SIKAGVGGTLGSLALIMGFGAMLGKMLADCGGAQRIATTLIAKFGKKHI-- 97 (438)
T ss_pred HHhHHHHHHHHHHHHHHHcCCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHhCccch--
Confidence 3667666666666666655566666543 222 234455555667889999999999999999999877543
Q ss_pred HHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhhhhhccccchhhHHhhcCCCCCHH
Q 008532 452 PAAFGVLQASYFLIHYLFASQTGHVGALYSAFLAMHLAAGVPGVLAALALAYNTNLFGAITHYSSGQAAVYYGAGYIDLP 531 (562)
Q Consensus 452 ~~~~~~l~~~~~~~~~~f~S~~a~~~il~Pi~~~la~~~Gv~p~~~~l~l~~~~~~~~~~tP~~s~~n~i~~~~g~i~~~ 531 (562)
...+.+..+.+..-.| -+....++.|+..+++++.|.|...+..++..+.+....+.|.+-+|... .+.-+.+..
T Consensus 98 --~~a~~l~~~il~ipvF--~dv~fvil~Pi~~~lak~~~~~~~~~~~~l~~gl~~th~~vPP~Pgpla~-a~~lgadlG 172 (438)
T PRK14984 98 --QWAVVLTGFTVGFALF--YEVGFVLMLPLVFTIAASANIPLLYVGVPMAAALSVTHGFLPPHPGPTAI-ATIFNADMG 172 (438)
T ss_pred --HHHHHHHHHHHhhHHH--HHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHhCCCCCCcHHHH-HHHhCCCHH
Confidence 2222222222222122 23445689999999999999998887777766544344455654444333 344467999
Q ss_pred HHHHHhHHHHHHHHHH
Q 008532 532 DVFKMGFTMALVNAII 547 (562)
Q Consensus 532 d~~k~g~~~~li~~vi 547 (562)
+++-+|....+...++
T Consensus 173 ~~il~Glivaip~~~i 188 (438)
T PRK14984 173 KTLLYGTILAIPTVIL 188 (438)
T ss_pred HHHHHhHHHHHHHHHH
Confidence 9999999988887644
|
|
| >PRK15060 L-dehydroascorbate transporter large permease subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0051 Score=65.51 Aligned_cols=151 Identities=15% Similarity=0.099 Sum_probs=106.9
Q ss_pred HhcCCChHHHHHhc------cchHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhhhcCCCh
Q 008532 156 VTRTLAFPTAFAAF------TNEVIWLIVISFFFARGFVKTGLGDRIATYFVKWLGKSTLGLSYGLTFSEALIAPAMPST 229 (562)
Q Consensus 156 l~gv~~~~~~~~~~------~~~~i~li~~~~~la~al~~tGl~~ria~~i~~~~g~~~~~l~~~l~l~~~~ls~~~~s~ 229 (562)
..+.++++|..+.. .....+.+.+...++..+..+|..+.+++++.+. +.+++..++.+.+...++.++++..
T Consensus 255 iyr~l~~~~l~~~l~~t~~~t~~i~~ii~~a~~f~~~lt~~gvp~~i~~~i~~~-~~~~~~~Ll~i~~~~lvlGmfld~~ 333 (425)
T PRK15060 255 IYREMTFSTLYHVLINAAKTTSVVMFLVASAQVSAWLITIAELPMMVSDLLQPL-VDSPRLLFIVIMVAIMVVGMVMDLT 333 (425)
T ss_pred HHcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHhhhHH
Confidence 35778888765533 4456778888999999999999999999998877 4577888889999999999999988
Q ss_pred hhhhhHhHHHHHHHHHHHcCCCCCCCCcchhhhHHHHHhHHhhhhhcccccccchhHHHHHHHHHHcCCcccccHHHHHH
Q 008532 230 TARAGGVFLPIIKSLSLSAGSKPGDSSSKKLGSYLIQSQFQSAGNSSALFLTAAAQNLLCLKLAEELGVIISSPWVSWFK 309 (562)
Q Consensus 230 ~a~~~~i~~Pi~~~i~~~~g~~p~~~~~~~~~~~l~l~~~~~~~~~g~~t~~g~~~n~i~~g~~~~~G~~i~~~~~~w~~ 309 (562)
.+. .++.|++.++++++|.||- .++ ........++...-|.| .|.....-. .+ ++ ..|-++
T Consensus 334 a~i--li~~Pil~Pi~~~~Gidpv-----~fg----ii~~~~~~ig~iTPPvG--~~lfv~~~i--a~--~~--~~~i~~ 394 (425)
T PRK15060 334 PTV--LILTPVLMPLVKEAGIDPI-----YFG----VMFIINCSIGLITPPVG--NVLNVISGV--AK--LK--FDDAVR 394 (425)
T ss_pred HHH--HHHHHHHHHHHHHcCCChH-----HHH----HHHHHHHHHhCCCCCcc--HHHHHHHHh--cC--CC--HHHHHH
Confidence 875 6899999999999999983 222 11222333444433434 344433221 23 56 778888
Q ss_pred HHHHHHHHHHHHHHHHH
Q 008532 310 AACVPALVALLATPLIL 326 (562)
Q Consensus 310 ~~~~~~li~~~~~~~~~ 326 (562)
...|..+..++...++.
T Consensus 395 ~~~Pf~~~~~~~l~l~~ 411 (425)
T PRK15060 395 GVFPYVLVLYSLLVLFI 411 (425)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88888766555444443
|
|
| >TIGR00529 AF0261 converved hypothetical integral membrane protein | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.013 Score=62.02 Aligned_cols=156 Identities=12% Similarity=0.055 Sum_probs=105.8
Q ss_pred CChHHHHHHHHHHHHHhCCcChHHHhh----ccCChhHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHhhccCCCchHHH
Q 008532 380 IPSVVAAMIGLSILLLLGVLDWDDCLS----EKSAWDTLAWFAVLVGMAGQLTNL-GIVTWMSDSVAKCLQSFSLSWPAA 454 (562)
Q Consensus 380 i~~~~vall~~~ll~~~gvl~~~~~~~----~~i~w~~l~l~~~~~~l~~~l~~t-Gi~~~ia~~l~~~~~~~~~~~~~~ 454 (562)
+++....+++.+++....-++.+|..+ ...+|+.+-++.+...+.+.++++ |..|++++.+.+.++.... .
T Consensus 21 ~~~~~all~~al~lgl~~G~~~~~i~~~i~~~g~~~~~i~lii~lg~l~g~l~~ssG~~~~ia~~l~~l~g~~~~----~ 96 (387)
T TIGR00529 21 VNIGLLIFVGVMILALLVRLGLEGFLWTLSLADSFWSLIVTIFIIAFLSGMMEKSFGDLSKFSEGMRTIFSKNSD----S 96 (387)
T ss_pred hhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCcccH----H
Confidence 566665555655555544455565431 245577777777766677788888 9999999999999865431 1
Q ss_pred HHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhhhhhccccchhhHHhhcCCCCCHHHHH
Q 008532 455 FGVLQASYFLIHYLFASQTGHVGALYSAFLAMHLAAGVPGVLAALALAYNTNLFGAITHYSSGQAAVYYGAGYIDLPDVF 534 (562)
Q Consensus 455 ~~~l~~~~~~~~~~f~S~~a~~~il~Pi~~~la~~~Gv~p~~~~l~l~~~~~~~~~~tP~~s~~n~i~~~~g~i~~~d~~ 534 (562)
.. ..+..++ .-.+...++.|+..++++..+.|+.....+...+-...-.+.|..-++ ..+.+.-+.|..+++
T Consensus 97 ~a-p~liG~l------Pv~~g~vilaPlv~~la~~~~~s~~~~~~~~~~~~~v~h~~~Pp~Pgp-i~aa~~l~~~lg~~i 168 (387)
T TIGR00529 97 FV-PALIGLM------PMPGGALFSAPMVKNSLKEERINPEKLTVKNYWFRHTWEFFWPIYPAV-VLVSALSGIHPGKVS 168 (387)
T ss_pred HH-HHHHHHh------hHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhcCCCchH-HHHHHHhCCCHHHHH
Confidence 11 1112111 113566679999999999999999988887766655555666764333 344455578999999
Q ss_pred HHhHHHHHHHHHH
Q 008532 535 KMGFTMALVNAII 547 (562)
Q Consensus 535 k~g~~~~li~~vi 547 (562)
.+|++..+.+.+.
T Consensus 169 l~gl~i~i~~~i~ 181 (387)
T TIGR00529 169 LTLFPVFAIAFFL 181 (387)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988544
|
This protein is predicted to have 10 transmembrane regions. Members of this family are found so far in the Archaea (Archaeoglobus fulgidus and Pyrococcus horikoshii) and in a bacterial thermophile, Thermotoga maritima. In Pyrococcus, the gene is located between nadA and nadB, two components of an enzyme involved in de novo synthesis of NAD. By PSI-BLAST, this family shows similarity (but not necessarily homology) to gluconate permease and other transport proteins. |
| >COG1593 DctQ TRAP-type C4-dicarboxylate transport system, large permease component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.034 Score=57.65 Aligned_cols=151 Identities=16% Similarity=0.144 Sum_probs=105.6
Q ss_pred HhcCCChHHHHHhc------cchHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhhhcCCCh
Q 008532 156 VTRTLAFPTAFAAF------TNEVIWLIVISFFFARGFVKTGLGDRIATYFVKWLGKSTLGLSYGLTFSEALIAPAMPST 229 (562)
Q Consensus 156 l~gv~~~~~~~~~~------~~~~i~li~~~~~la~al~~tGl~~ria~~i~~~~g~~~~~l~~~l~l~~~~ls~~~~s~ 229 (562)
+.+.+++++..+.. +..+.+++.+.-.++..+...++-+.+++++.+.. .++..+++.+.+...++..+++..
T Consensus 209 vYr~l~~~~l~~~l~~a~~~t~~Vm~iva~a~~f~~~lt~~~vp~~la~~~~~~~-~~~~~~ll~inl~llvvG~fmd~~ 287 (379)
T COG1593 209 VYRELTLKELPKVLLEAVKTTAVVMFIVAAAAAFAWLLTVEQVPQQLADWLLSLS-DSPLVVLLVINLLLLVVGTFMDLT 287 (379)
T ss_pred HHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHhcC-CChHHHHHHHHHHHHHHHHhccHH
Confidence 45778887765432 34566677778888999999999999999998764 577788888999999999999888
Q ss_pred hhhhhHhHHHHHHHHHHHcCCCCCCCCcchhhhHHHHHhHHhhhhhcccccccchhHHHHHHHHHHcCCcccccHHHHHH
Q 008532 230 TARAGGVFLPIIKSLSLSAGSKPGDSSSKKLGSYLIQSQFQSAGNSSALFLTAAAQNLLCLKLAEELGVIISSPWVSWFK 309 (562)
Q Consensus 230 ~a~~~~i~~Pi~~~i~~~~g~~p~~~~~~~~~~~l~l~~~~~~~~~g~~t~~g~~~n~i~~g~~~~~G~~i~~~~~~w~~ 309 (562)
.+. .++.|++.+++++.|.||- +++..+ ..-..+|...-|.|. |+.+.... .+ .+ ..+..+
T Consensus 288 a~i--lil~Pil~Pi~~~~GIDPv-----hfGvv~----v~Nl~IGliTPPvG~--~Lfv~s~V--~~--~~--~~~~~k 348 (379)
T COG1593 288 AAI--LILTPILLPIAAALGIDPV-----HFGVVF----VLNLSIGLITPPVGM--VLFVASAV--GK--VP--IEAVIK 348 (379)
T ss_pred HHH--HHHHHHHHHHHHHhCCCce-----eeHHHH----HHHHHhhCCCCCcch--hHHHHHhh--cC--CC--HHHHHH
Confidence 765 6999999999999999984 333222 233445555555563 33332211 12 55 668877
Q ss_pred HHHHHHHHHHHHHHHHH
Q 008532 310 AACVPALVALLATPLIL 326 (562)
Q Consensus 310 ~~~~~~li~~~~~~~~~ 326 (562)
.-.|.-+..+....++.
T Consensus 349 ~i~Pfl~~~~~~L~li~ 365 (379)
T COG1593 349 AILPFLVALILVLLLIT 365 (379)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 77776655554444443
|
|
| >PF06808 DctM: DctM-like transporters; InterPro: IPR010656 This domain represents a conserved region located towards the N terminus of the DctM subunit of the bacterial and archaeal TRAP C4-dicarboxylate transport (Dct) system permease | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0082 Score=64.30 Aligned_cols=147 Identities=19% Similarity=0.240 Sum_probs=103.7
Q ss_pred hcCCChHHHHHhc------cchHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhhhcCCChh
Q 008532 157 TRTLAFPTAFAAF------TNEVIWLIVISFFFARGFVKTGLGDRIATYFVKWLGKSTLGLSYGLTFSEALIAPAMPSTT 230 (562)
Q Consensus 157 ~gv~~~~~~~~~~------~~~~i~li~~~~~la~al~~tGl~~ria~~i~~~~g~~~~~l~~~l~l~~~~ls~~~~s~~ 230 (562)
.+..+++|..+.. .....+.+.+.-.++..+..+|+.+.+++++....++ ++..+....+...++..+++...
T Consensus 256 ~~~~~~~~l~~~l~~~~~~~~~i~~iia~a~~~~~~l~~~g~~~~i~~~i~~l~~~-~~~~l~l~~l~~lilG~~m~~~a 334 (416)
T PF06808_consen 256 YRRLSWKDLWRALVETARTTGMILFIIAAAGIFSWVLTLTGVPQAIAEFILSLSGS-PWLVLLLIMLILLILGMFMDTTA 334 (416)
T ss_pred hcccChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccHHHHHHHHhcCcc-hHHHHHHHHHHHHHHhccccHHH
Confidence 4778888765543 3356778888889999999999999999999877544 47778888889999999999888
Q ss_pred hhhhHhHHHHHHHHHHHcCCCCCCCCcchhhhHHHHHhHHhhhhhcccccccchhHHH-HHHHHHHcCCcccccHHHHHH
Q 008532 231 ARAGGVFLPIIKSLSLSAGSKPGDSSSKKLGSYLIQSQFQSAGNSSALFLTAAAQNLL-CLKLAEELGVIISSPWVSWFK 309 (562)
Q Consensus 231 a~~~~i~~Pi~~~i~~~~g~~p~~~~~~~~~~~l~l~~~~~~~~~g~~t~~g~~~n~i-~~g~~~~~G~~i~~~~~~w~~ 309 (562)
+. .+..|++.++..++|.||- . .-+.+.+...++. .||.-+ .|.. +.+. .+ .+ ..+-++
T Consensus 335 ~~--ii~~pi~~P~~~~~Gidpi-----~----~g~~~~~~~~ig~-iTPPvg-l~lfva~~i---a~--~~--~~~i~~ 394 (416)
T PF06808_consen 335 AI--IIVAPILAPIAQALGIDPI-----H----FGVFMFYNAEIGL-ITPPVG-LNLFVAAGI---AG--VP--MEKIFR 394 (416)
T ss_pred HH--HHHHHHHHHHHHHhCcchh-----h----HHHHHHHHHHhcC-CCCCcc-HHHHHHHHH---hC--CC--HHHHHH
Confidence 65 6899999999999999984 2 2222334444454 454322 3433 3333 23 45 778888
Q ss_pred HHHHHHHHHHHHHHH
Q 008532 310 AACVPALVALLATPL 324 (562)
Q Consensus 310 ~~~~~~li~~~~~~~ 324 (562)
...|...+......+
T Consensus 395 ~~~Pf~~~~~~~l~l 409 (416)
T PF06808_consen 395 GILPFIFVLLVALLL 409 (416)
T ss_pred HHHHHHHHHHHHHHH
Confidence 887776655444433
|
In general, C4-dicarboxylate transport systems allow C4-dicarboxylates like succinate, fumarate, and malate to be taken up. TRAP C4-dicarboxylate carriers are secondary carriers that use an electrochemical H+ gradient as the driving force for transport. DctM is an integral membrane protein that is one of the constituents of TRAP carriers [, ]. Note that many family members are hypothetical proteins. |
| >PF03605 DcuA_DcuB: Anaerobic c4-dicarboxylate membrane transporter; InterPro: IPR004668 These proteins are members of the C4-Dicarboxylate Uptake (Dcu) family | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0035 Score=64.21 Aligned_cols=165 Identities=16% Similarity=0.221 Sum_probs=117.1
Q ss_pred CCCChHHHHHHHHHHHHH-hCCcChHHHhhccCChhHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHhhccCCCchHHHHH
Q 008532 378 LGIPSVVAAMIGLSILLL-LGVLDWDDCLSEKSAWDTLAWFAVLVGMAGQLTNLGIVTWMSDSVAKCLQSFSLSWPAAFG 456 (562)
Q Consensus 378 ~gi~~~~vall~~~ll~~-~gvl~~~~~~~~~i~w~~l~l~~~~~~l~~~l~~tGi~~~ia~~l~~~~~~~~~~~~~~~~ 456 (562)
-|+..+..+.+|..++.+ +|+ ++ .+.+||+++.+.+.+.-+.+|+.+|-.|++.+.-.+.+..+|.. ..++
T Consensus 16 GGiglG~~gg~G~~il~~~fgl-~P-----g~~PidVilII~aVi~a~a~lQaaGGlDylV~~Aek~LRk~Pk~--It~l 87 (364)
T PF03605_consen 16 GGIGLGLAGGLGVAILVFGFGL-KP-----GSPPIDVILIIMAVITAAAALQAAGGLDYLVQIAEKILRKNPKY--ITFL 87 (364)
T ss_pred cchHHHHHHHHHHHHHHHhcCC-CC-----CCCCHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHhCCCc--EEEe
Confidence 347777788888887766 443 32 25899999999999999999999999999999999999887652 1222
Q ss_pred HHHHHHHHHHHHhchhHHHH-HHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhhhhhccccchhhHHh--hcC-CCCCHHH
Q 008532 457 VLQASYFLIHYLFASQTGHV-GALYSAFLAMHLAAGVPGVLAALALAYNTNLFGAITHYSSGQAAVY--YGA-GYIDLPD 532 (562)
Q Consensus 457 ~l~~~~~~~~~~f~S~~a~~-~il~Pi~~~la~~~Gv~p~~~~l~l~~~~~~~~~~tP~~s~~n~i~--~~~-g~i~~~d 532 (562)
-=.+.+++. +...|+++ .-++|+..+++...|+.|.--.-.-..+++..-..+|.+.....+. ... .++++.|
T Consensus 88 AP~vt~~~T---~~~GTgh~a~s~lPVI~eVA~~~~IRPeRPls~svvASq~aItaSPiSAA~~~~~~~l~~~~gv~~~~ 164 (364)
T PF03605_consen 88 APLVTYLFT---FLAGTGHVAYSLLPVIAEVAKENGIRPERPLSISVVASQIAITASPISAATVAMIAILAPAHGVSLLQ 164 (364)
T ss_pred hhHHHHHHH---HHhcccHHHHHhhHHHHHHHHHcCCCCCCchHHHHHHHhcchhcCcHHHHHHHHHHHHccccCCCHHH
Confidence 223333333 34566654 5889999999999999874322223344444445578876655433 233 5689999
Q ss_pred HHHHhHHHHHHHHHHHHHHHH
Q 008532 533 VFKMGFTMALVNAIIWGVTGT 553 (562)
Q Consensus 533 ~~k~g~~~~li~~vi~~~v~~ 553 (562)
.....+|-+++..++..++..
T Consensus 165 iL~V~iPat~ig~~~~a~~~~ 185 (364)
T PF03605_consen 165 ILAVTIPATLIGVLVAAFVSS 185 (364)
T ss_pred HHHhhHHHHHHHHHHHHHHHH
Confidence 999999999999887666543
|
Most proteins in this family are predicted to have 12 GES predicted transmembrane regions; however the one member whose membrane topology has been experimentally determined has 10 transmembrane regions, with both the N- and C-termini localized to the periplasm []. The DcuA and DcuB proteins are involved in the transport of aspartate, malate, fumarate and succinate in many species [, , ], and are thought to function as antiporters with any two of these substrates. Since DcuA is encoded in an operon with the gene for aspartase, and DcuB is encoded in an operon with the gene for fumarase, their physiological functions may be to catalyze aspartate:fumarate and fumarate:malate exchange during the anaerobic utilization of aspartate and fumarate, respectively []. The Escherichia coli DcuA and DcuB proteins have very different expression patterns []. DcuA is constitutively expressed; DcuB is strongly induced anaerobically by FNR and C4-dicarboxylates, while it is repressed by nitrate and subject to CRP-mediated catabolite repression.; GO: 0015556 C4-dicarboxylate transmembrane transporter activity, 0015740 C4-dicarboxylate transport, 0016021 integral to membrane |
| >PF03553 Na_H_antiporter: Na+/H+ antiporter family; InterPro: IPR018461 A single member of the NhaC family, a protein from Bacillus firmus, has been functionally characterised | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0084 Score=61.35 Aligned_cols=102 Identities=21% Similarity=0.164 Sum_probs=81.2
Q ss_pred hHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhhhcCCChhhhhhHhHHHHHHHHHHHcCCC
Q 008532 172 EVIWLIVISFFFARGFVKTGLGDRIATYFVKWLGKSTLGLSYGLTFSEALIAPAMPSTTARAGGVFLPIIKSLSLSAGSK 251 (562)
Q Consensus 172 ~~i~li~~~~~la~al~~tGl~~ria~~i~~~~g~~~~~l~~~l~l~~~~ls~~~~s~~a~~~~i~~Pi~~~i~~~~g~~ 251 (562)
+++++++....++..++++|..+.+.+++.++. +++..+....++++.+++....+..... .++.|++++++++.|.+
T Consensus 162 ~~i~i~ila~~l~~i~~~~G~~~~~v~~~~~~~-~~~~~l~~~~~l~~~~~~~~tgs~~~ti-~i~~pi~~~l~~~~g~~ 239 (303)
T PF03553_consen 162 PTIIILILAGALGGILEKTGVLDALVNKLLKKI-KSPRSLPAVTFLLSIIISFATGSSWGTI-AIMGPIFKPLAEKMGIS 239 (303)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhc-CCccHHHHHHHHHHHHHHHHHHhhhHHH-HHHHHHHHHHHHHhccc
Confidence 577777888899999999999999999998887 5667888888999999999888888766 58999999999999987
Q ss_pred CCCCCcchhhhHHHHHhHHhhhhhcccccccch
Q 008532 252 PGDSSSKKLGSYLIQSQFQSAGNSSALFLTAAA 284 (562)
Q Consensus 252 p~~~~~~~~~~~l~l~~~~~~~~~g~~t~~g~~ 284 (562)
+. + +.-.+..++..+....|+++.
T Consensus 240 ~~-----~----~a~ai~~~~~~g~~l~P~s~~ 263 (303)
T PF03553_consen 240 PP-----L----LAGAIESGATFGDPLSPWSDT 263 (303)
T ss_pred HH-----H----HHHHHHhhhhhcCCCCcchHH
Confidence 62 2 223334456667777788764
|
It is involved in pH homeostasis and sodium extrusion. Members of the NhaC family are found in both Gram-negative bacteria and Gram-positive bacteria.; GO: 0015385 sodium:hydrogen antiporter activity, 0006814 sodium ion transport, 0006885 regulation of pH, 0016021 integral to membrane |
| >PF07854 DUF1646: Protein of unknown function (DUF1646); InterPro: IPR012443 Some of the members of this family are hypothetical bacterial and archaeal proteins, but others are annotated as being cation transporters expressed by the archaeon Methanosarcina mazei (Methanosarcina frisia) (Q8PXG5 from SWISSPROT, Q8PXG7 from SWISSPROT and Q8PXG8 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.029 Score=56.29 Aligned_cols=43 Identities=14% Similarity=0.113 Sum_probs=35.3
Q ss_pred hhhhccccchhhHHhhcCCCCCHHHHHHHhHHHHHHHHHHHHHH
Q 008532 508 FGAITHYSSGQAAVYYGAGYIDLPDVFKMGFTMALVNAIIWGVT 551 (562)
Q Consensus 508 ~~~~tP~~s~~n~i~~~~g~i~~~d~~k~g~~~~li~~vi~~~v 551 (562)
+|+ +-+|+-||.+..|.-+++.|||.|.|.|+.++.+++..++
T Consensus 301 GGM-lIPGNIPNIIsAgkL~I~skEWar~gvPlGl~~m~~yfi~ 343 (347)
T PF07854_consen 301 GGM-LIPGNIPNIISAGKLKITSKEWARLGVPLGLVLMVVYFII 343 (347)
T ss_pred CCe-ecCCCcchhhccccCccchHHHHHHcccHHHHHHHHHHHH
Confidence 455 4457999999999889999999999999999887765443
|
|
| >TIGR02123 TRAP_fused TRAP transporter, 4TM/12TM fusion protein | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.014 Score=65.11 Aligned_cols=148 Identities=14% Similarity=0.053 Sum_probs=102.2
Q ss_pred cCCChHHHHHhc------cchHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhhhcCCChhh
Q 008532 158 RTLAFPTAFAAF------TNEVIWLIVISFFFARGFVKTGLGDRIATYFVKWLGKSTLGLSYGLTFSEALIAPAMPSTTA 231 (562)
Q Consensus 158 gv~~~~~~~~~~------~~~~i~li~~~~~la~al~~tGl~~ria~~i~~~~g~~~~~l~~~l~l~~~~ls~~~~s~~a 231 (562)
+.+++++..+.. ...+.+.+.+.-+++..+..+|+.+++++.+....++++...+....+...++.++++.+.+
T Consensus 372 r~l~~~~l~~~l~~~a~~~~~I~~iia~a~i~~~~lt~tGl~~~l~~~i~~l~~~~~~~~Lll~~l~~lilGm~l~~~a~ 451 (613)
T TIGR02123 372 TRMGLGEIFGALEDGARNAVPVAAACAGAGIIIGVVTLTGLGLKISNDLLDLAGGNLFLLLILTMIACIILGMGLPTTAN 451 (613)
T ss_pred cCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcccHHHH
Confidence 567777765433 34667777788889999999999999999999987768888888999999999999998876
Q ss_pred hhhHhHHHHHHHHHHHcCCCCCCCCcchhhhHHHHHhHHhhhhhcccccccchhHHHH-HHHHHHcCCcccccHHHHHHH
Q 008532 232 RAGGVFLPIIKSLSLSAGSKPGDSSSKKLGSYLIQSQFQSAGNSSALFLTAAAQNLLC-LKLAEELGVIISSPWVSWFKA 310 (562)
Q Consensus 232 ~~~~i~~Pi~~~i~~~~g~~p~~~~~~~~~~~l~l~~~~~~~~~g~~t~~g~~~n~i~-~g~~~~~G~~i~~~~~~w~~~ 310 (562)
. .++.|++.++..++|.||- ..-+.+.+...++. .||.=. .|..+ .+. +| .+ ..+-.+.
T Consensus 452 ~--ii~~pi~~P~l~~lGidpi---------~~~~~v~~~~~ig~-iTPPvg-l~lfvaa~I---a~--~~--~~~~~~~ 511 (613)
T TIGR02123 452 Y--IITATLAAPALIALGVPPI---------AAHMFVFYFGILAD-ITPPVA-LAAFAAAGI---AG--AD--PMKTGFE 511 (613)
T ss_pred H--HHHHHHHHHHHHHcCCCHH---------HHHHHHHHHHHHHc-CCCCch-HHHHHHHhh---cC--CC--HHHHHHH
Confidence 5 6899999999999999873 12222333444443 344221 23322 222 33 34 5566667
Q ss_pred HHHHHHHHHHHHHHH
Q 008532 311 ACVPALVALLATPLI 325 (562)
Q Consensus 311 ~~~~~li~~~~~~~~ 325 (562)
..|..+...++..++
T Consensus 512 ~~p~~~~~~~~~~l~ 526 (613)
T TIGR02123 512 AFKLALAGYLVPFMF 526 (613)
T ss_pred HHHHHHHHHHHHHHH
Confidence 777766555444433
|
In some species, the 12-transmembrane spanning and 4-transmembrane spanning components of tripartite ATP-independent periplasmic (TRAP)-type transporters are fused. This model describes such transporters, found in the Archaea and in Bacteria. |
| >PRK09921 permease DsdX; Provisional | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.027 Score=60.66 Aligned_cols=162 Identities=10% Similarity=0.020 Sum_probs=95.7
Q ss_pred CCChHHHHHHHHHHHHHhCCcChHHHhh---ccCC--h-hHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHhhccCCCchH
Q 008532 379 GIPSVVAAMIGLSILLLLGVLDWDDCLS---EKSA--W-DTLAWFAVLVGMAGQLTNLGIVTWMSDSVAKCLQSFSLSWP 452 (562)
Q Consensus 379 gi~~~~vall~~~ll~~~gvl~~~~~~~---~~i~--w-~~l~l~~~~~~l~~~l~~tGi~~~ia~~l~~~~~~~~~~~~ 452 (562)
++++...-+++.+...+..-++.+|..+ ++.. + .+-..+.-+..+++.++++|..+.+++.+.+. +..+. .
T Consensus 26 k~~~f~aLl~~ai~~gl~~g~~~~~~~~~i~~g~g~t~g~i~~ii~lGai~G~lle~SGaa~~ia~~i~~~-~~~~~--~ 102 (445)
T PRK09921 26 KFHPFLALLLASFFVGAMMGMGPLEMVNAIESGIGGTLGFLAAVIGLGTILGKMMEVSGAAERIGLTLQRC-RWLSA--D 102 (445)
T ss_pred HHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHH-hhhhH--H
Confidence 3666555555666555554455555432 2222 2 23345555667889999999999999998654 33221 1
Q ss_pred HHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhhhhhccccchhhHHhhcCCCCCHHH
Q 008532 453 AAFGVLQASYFLIHYLFASQTGHVGALYSAFLAMHLAAGVPGVLAALALAYNTNLFGAITHYSSGQAAVYYGAGYIDLPD 532 (562)
Q Consensus 453 ~~~~~l~~~~~~~~~~f~S~~a~~~il~Pi~~~la~~~Gv~p~~~~l~l~~~~~~~~~~tP~~s~~n~i~~~~g~i~~~d 532 (562)
... ....+......| -.....++.|+..++++..|.|+....++++.+........|. +|....+.+.-+.+..+
T Consensus 103 ~a~--~~~gll~~IpvF--~~~~~vil~Pl~~~lak~~~~s~~~~~~~~~~~~~~~h~~vPp-~Pg~~~~a~~lg~~lg~ 177 (445)
T PRK09921 103 VIM--VLVGLICGITLF--VEVGVVLLIPLAFSIAKKTNTSLLKLAIPLCTALMAVHCVVPP-HPAALFVANKLGADIGS 177 (445)
T ss_pred HHH--HHHHHHHcccHH--HHhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhHhcCCC-CcHHHHHHHHhCCCHHH
Confidence 111 111111111112 1234558999999999999999777666655554323344454 33333334445679999
Q ss_pred HHHHhHHHHHHHHHHH
Q 008532 533 VFKMGFTMALVNAIIW 548 (562)
Q Consensus 533 ~~k~g~~~~li~~vi~ 548 (562)
+.-+|++.++...++.
T Consensus 178 ~~l~Gl~~~i~~~~i~ 193 (445)
T PRK09921 178 VIVYGLLVGLMASLVG 193 (445)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999987776553
|
|
| >PF06149 DUF969: Protein of unknown function (DUF969); InterPro: IPR010374 This is a family of uncharacterised bacterial membrane proteins | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.018 Score=54.42 Aligned_cols=194 Identities=14% Similarity=0.126 Sum_probs=108.8
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHHhcCCChHHHHHhc-----cchHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhCC
Q 008532 132 TIAGLVLSPLPVGAWAFLGLTTSIVTRTLAFPTAFAAF-----TNEVIWLIVISFFFARGFVKTGLGDRIATYFVKWLGK 206 (562)
Q Consensus 132 ~i~lw~~~~~p~~~~all~~~ll~l~gv~~~~~~~~~~-----~~~~i~li~~~~~la~al~~tGl~~ria~~i~~~~g~ 206 (562)
.+++++++ +|+-.+-+.+.+.-.+.+.+++.|.++.+ .+..+-++.-.+.+-..+|+.|+=+|-.+.+.+.-+-
T Consensus 10 IvvGFalk-~d~ilVV~vAgivTgLvaG~~~~~iL~~lG~aFv~nR~mslf~l~LPvIGllER~GLke~A~~lI~kik~a 88 (218)
T PF06149_consen 10 IVVGFALK-LDPILVVLVAGIVTGLVAGMSFVEILETLGKAFVDNRYMSLFILTLPVIGLLERYGLKERAANLIGKIKGA 88 (218)
T ss_pred HHhhHHHh-ccchhhhHHHHHHHHHHcCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcc
Confidence 34455554 44444444444444445668887776533 3344555555577778899999999988877766555
Q ss_pred ChhhHHHHHHHHHHHhhhcCC-Chhhhhh---HhHHHHHHHHHHHcCCCCCCCCcchhhhHHHHHhHHhhhhhccccccc
Q 008532 207 STLGLSYGLTFSEALIAPAMP-STTARAG---GVFLPIIKSLSLSAGSKPGDSSSKKLGSYLIQSQFQSAGNSSALFLTA 282 (562)
Q Consensus 207 ~~~~l~~~l~l~~~~ls~~~~-s~~a~~~---~i~~Pi~~~i~~~~g~~p~~~~~~~~~~~l~l~~~~~~~~~g~~t~~g 282 (562)
+..+++....+.--+.+.+.- +-..|+- -+..|...+-+++-..+-+++++.+....-.-.=-++.-.|-. ...+
T Consensus 89 T~Gril~~Yl~iR~i~aa~gl~~lGGh~QfVRPLi~PMaeaAae~~~g~l~e~~~e~ika~aAA~eN~gnFFgqn-iFva 167 (218)
T PF06149_consen 89 TAGRILSVYLLIREIAAAFGLTRLGGHAQFVRPLIAPMAEAAAEAKYGELSEKDREKIKAMAAAAENYGNFFGQN-IFVA 167 (218)
T ss_pred cHHHHHHHHHHHHHHHHHhCCcccCCCCccccchhhhHHHHHHhhccCCCCHhHHHHHHHHHHHHHHHHHHHhHH-HHHh
Confidence 777777666665555554443 3333331 2344555444443211222222233322211111222222222 2233
Q ss_pred chhHHHHHHHHHHcCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008532 283 AAQNLLCLKLAEELGVIISSPWVSWFKAACVPALVALLATPLILYKL 329 (562)
Q Consensus 283 ~~~n~i~~g~~~~~G~~i~~~~~~w~~~~~~~~li~~~~~~~~~~~~ 329 (562)
.+.-+++.|.+++.||+++ -.+-.++++|.+++.+++.....+++
T Consensus 168 ~~gvLLi~gtl~~~G~~v~--~~~ia~~~IP~Ai~a~ii~~~~~~~~ 212 (218)
T PF06149_consen 168 AGGVLLIQGTLKELGYEVE--PLHIALWAIPTAIIAFIIHGIRLYLF 212 (218)
T ss_pred ccceeeeeeeHHhcCcccc--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333455667888899999 99999999999998888777666554
|
|
| >COG2031 AtoE Short chain fatty acids transporter [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.031 Score=57.61 Aligned_cols=132 Identities=18% Similarity=0.218 Sum_probs=91.2
Q ss_pred ChhHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHhhccCCCchHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHH
Q 008532 410 AWDTLAWFAVLVGMAGQLTNLGIVTWMSDSVAKCLQSFSLSWPAAFGVLQASYFLIHYLFASQTGHVGALYSAFLAMHLA 489 (562)
Q Consensus 410 ~w~~l~l~~~~~~l~~~l~~tGi~~~ia~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~f~S~~a~~~il~Pi~~~la~~ 489 (562)
.++++.=+----++...++++|+.+-+++.+....++. .++. +. .+...++.....|....-++=.|+..+-++.
T Consensus 309 ~aGillQFPfYagI~gim~~~~La~~Is~ffv~Va~~~--t~p~-fa--fl~sg~vN~fvPSGGgew~ieap~v~~a~~~ 383 (446)
T COG2031 309 TAGILLQFPFYAGIMGMMVSTGLAQVISEFFVSIANED--TWPV-FA--FLSSGLVNIFVPSGGGEWAIEAPIVSPAAQE 383 (446)
T ss_pred ceEEEEecccHHHHHHHHHHhhHHHHHHHHHHHHhcCc--hHHH-HH--HHHhhHhheeccCCCceEEEEeeecchhhHH
Confidence 35555433333334456677899999999999886553 2332 22 2233355656788888888899999999999
Q ss_pred cCCCHHHHHHHHHHHHhhhhhhccccchhhHHhhcCCCCCHHHHHHHhHHHHHHHHHHHH
Q 008532 490 AGVPGVLAALALAYNTNLFGAITHYSSGQAAVYYGAGYIDLPDVFKMGFTMALVNAIIWG 549 (562)
Q Consensus 490 ~Gv~p~~~~l~l~~~~~~~~~~tP~~s~~n~i~~~~g~i~~~d~~k~g~~~~li~~vi~~ 549 (562)
+|.|+--..++.+.+....+.+-|.=+- -..+.++++.||.+-+.++..++..++..
T Consensus 384 Lg~~~gk~~~A~~~gdawtNlIqPFwAL---P~L~i~Gl~ardI~Gy~~~~Liv~~vv~~ 440 (446)
T COG2031 384 LGVDLGKKAMAYAWGDAWTNLIQPFWAL---PALGIAGLKARDIMGYTFLFLLVVGVVIA 440 (446)
T ss_pred hCCCHHHHHHHHHHHHHHhhhhhHHHHH---HHHHhcCcchhhhcceeHHHHHHHHHHHH
Confidence 9999998888888877654444443222 23466789999999998888777766543
|
|
| >COG1757 NhaC Na+/H+ antiporter [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.026 Score=61.56 Aligned_cols=126 Identities=16% Similarity=0.146 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhhhcCCChhhhhhHhHHHHHHHHHHHcCCCC
Q 008532 173 VIWLIVISFFFARGFVKTGLGDRIATYFVKWLGKSTLGLSYGLTFSEALIAPAMPSTTARAGGVFLPIIKSLSLSAGSKP 252 (562)
Q Consensus 173 ~i~li~~~~~la~al~~tGl~~ria~~i~~~~g~~~~~l~~~l~l~~~~ls~~~~s~~a~~~~i~~Pi~~~i~~~~g~~p 252 (562)
++..++....++..+++.|..+++.+.+.+... +...+....++.+.+.+....+..... .++.|++++++++.+.++
T Consensus 325 ~i~ilila~siggi~~~~G~~~~l~~~~~~~i~-s~~~l~~~~~l~~~~~~~~tg~~~~si-~i~gpia~~i~~~~~~~~ 402 (485)
T COG1757 325 AILILILAWSIGGILEDLGTLEYLLSLLQKFIK-SKGSLPLIIFLLAILVAFATGTSWGSI-IIMGPIAKEIADKLGLHS 402 (485)
T ss_pred HHHHHHHHHHHHHHHHHcCcHHHHHHHHHhcCC-CcchhHHHHHHHHHHHHHHhhcceeee-eeeHHHHHHHHHHhCccH
Confidence 666777778889999999999999999988764 444788888888999999998888766 699999999999998765
Q ss_pred CCCCcchhhhHHHHHhHHhhhhhcccccccchhHHHHHHHHHHcCCcccccHHHHHHHHHHHH
Q 008532 253 GDSSSKKLGSYLIQSQFQSAGNSSALFLTAAAQNLLCLKLAEELGVIISSPWVSWFKAACVPA 315 (562)
Q Consensus 253 ~~~~~~~~~~~l~l~~~~~~~~~g~~t~~g~~~n~i~~g~~~~~G~~i~~~~~~w~~~~~~~~ 315 (562)
+ +..+ .+-.+++.+.-+.|+++.. ....+. .|...+ -.+|+.+++...
T Consensus 403 ~-----~l~~----~l~~gg~~~~~~~Pws~~~-i~~s~~---~~~~v~--~~t~lPya~~~~ 450 (485)
T COG1757 403 K-----RLSR----ALEAGGTFGDHLSPWSDTT-ILSSTG---LGCIVH--VTTQLPYAFYAA 450 (485)
T ss_pred H-----HHHH----HHHhcCeecCCCCCcchhH-HHHHhc---cCCCch--hHhhHHHHHHHH
Confidence 2 2222 2334555566677877532 222222 221134 557777776554
|
|
| >COG2056 Predicted permease [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.068 Score=54.38 Aligned_cols=131 Identities=20% Similarity=0.152 Sum_probs=96.4
Q ss_pred hHHHHHHHHHHHHHhcCCChHHHHHhccchHHHHHHHHHH------HHHHHHHhCHHHHHHHHHHHHhCCChhhHHHHHH
Q 008532 143 VGAWAFLGLTTSIVTRTLAFPTAFAAFTNEVIWLIVISFF------FARGFVKTGLGDRIATYFVKWLGKSTLGLSYGLT 216 (562)
Q Consensus 143 ~~~~all~~~ll~l~gv~~~~~~~~~~~~~~i~li~~~~~------la~al~~tGl~~ria~~i~~~~g~~~~~l~~~l~ 216 (562)
...-++.+..++.+.|+.+|||.=+-|....-.+-+-.|+ +++.+++||-.+.+.+......|++...-.....
T Consensus 264 milgal~gliv~~~~gv~~~ke~d~~~~~G~kmMa~IgFVMl~AaGfa~Vi~~TG~V~~LV~s~~~~~g~sK~l~a~lMl 343 (444)
T COG2056 264 MILGALAGLIVFFLSGVIKWKETDDVFTEGVKMMAFIGFVMLVAAGFAEVINATGAVEELVESSSSIIGQSKLLAALLML 343 (444)
T ss_pred chHHHHHHHHHHHHhcceehhhhHHHHHhhHHHHHHHHHHHHHHhHHHHHHHhccCHHHHHHHHHHHhcccHHHHHHHHH
Confidence 3456778888889999999988766665554444333333 3678999999999999999999877766666777
Q ss_pred HHHHHhhhcCCChhhhhhHhHHHHHHHHHHHcCCCCCCCCcchhhhHHHHHhHHhhhhhcccccccc
Q 008532 217 FSEALIAPAMPSTTARAGGVFLPIIKSLSLSAGSKPGDSSSKKLGSYLIQSQFQSAGNSSALFLTAA 283 (562)
Q Consensus 217 l~~~~ls~~~~s~~a~~~~i~~Pi~~~i~~~~g~~p~~~~~~~~~~~l~l~~~~~~~~~g~~t~~g~ 283 (562)
+++.+.++-+.+..+++ -+...+..++|.++|.+|. .....+..++.+|-.+.|-.+
T Consensus 344 vvGLlITMGIGsSF~TI-PIIA~iyVPLc~~lGFSp~---------ati~liG~AaALGDAGSPASD 400 (444)
T COG2056 344 VVGLLITMGIGSSFGTI-PIIAAIYVPLCLKLGFSPL---------ATIALIGTAAALGDAGSPASD 400 (444)
T ss_pred HHHHHHhccccccccch-HHHHHHHHhHHHHhCCCHH---------HHHHHHHHHHHhcCCCCCccc
Confidence 78888898888887776 5777788899999999873 233334556666666666544
|
|
| >PRK09804 putative cryptic C4-dicarboxylate transporter DcuD; Provisional | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.067 Score=56.92 Aligned_cols=144 Identities=11% Similarity=0.020 Sum_probs=102.0
Q ss_pred hhHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHhhccCCCchHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHc
Q 008532 411 WDTLAWFAVLVGMAGQLTNLGIVTWMSDSVAKCLQSFSLSWPAAFGVLQASYFLIHYLFASQTGHVGALYSAFLAMHLAA 490 (562)
Q Consensus 411 w~~l~l~~~~~~l~~~l~~tGi~~~ia~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~f~S~~a~~~il~Pi~~~la~~~ 490 (562)
-+.-+.+....+++..|++.|..+.+.+.+.+-++.... +..++....++..+....+.|.++...+++-.+.|+-.+.
T Consensus 74 ~glGl~Im~~~GFa~YM~hIGA~~~lV~~~~kPL~~ik~-pYlll~~~~llg~llsl~IpSAaGLa~lLmatl~PvLi~~ 152 (455)
T PRK09804 74 AGLGLSIMAVGGYARYMERIGASRAMVSLLSRPLKLIRS-PYIILSATYVIGQIMAQFITSASGLGMLLMVTLFPTLVSL 152 (455)
T ss_pred ccHHHHHHHHHhHHHHHHhhCccHHHHHHHHHHHHhcCC-chhHHHHHHHHHHHHHhccccHHhHHHHHHHHHHHHHHHc
Confidence 345667777888999999999999999999887765442 3334444444444566678999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhhhhhhccccchhhHHhhcCCCCCHHHHH-HHhHHHHHHHHHHHHHHHHHHHHH
Q 008532 491 GVPGVLAALALAYNTNLFGAITHYSSGQAAVYYGAGYIDLPDVF-KMGFTMALVNAIIWGVTGTFWWKF 558 (562)
Q Consensus 491 Gv~p~~~~l~l~~~~~~~~~~tP~~s~~n~i~~~~g~i~~~d~~-k~g~~~~li~~vi~~~v~~~~w~~ 558 (562)
|++|...+-.++-.+ .-...|. ++.|..+...-+.+..|++ ++-.|.++...++..+.-|+|-++
T Consensus 153 Gvs~~~AaaVia~t~--~i~~gP~-s~~~v~aA~~~g~~v~~y~~~~q~p~~i~~i~~iai~h~fwqr~ 218 (455)
T PRK09804 153 GVSRLSAVAVIATTM--SIEWGIL-ETNSIFAAQVAGMKIATYFFHYQLPVASCVIISVAISHFFVQRA 218 (455)
T ss_pred CCCHHHHHHHHHhhh--cccCCCC-CchHHHHHHHcCCChhheeeeccHHHHHHHHHHHHHHHHHHHHH
Confidence 999987443333222 2223454 4455566666678888888 788888877777766666666544
|
|
| >COG2851 CitM H+/citrate symporter [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.12 Score=53.13 Aligned_cols=129 Identities=19% Similarity=0.197 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhcCCChHHHHH---hccc---hHHHHHHHHHHHHHHHHHhCHHHHH
Q 008532 123 WQLLSIFLSTIAGLVLSPLPVGAWAFLGLTTSIVTRTLAFPTAFA---AFTN---EVIWLIVISFFFARGFVKTGLGDRI 196 (562)
Q Consensus 123 ~~~l~i~~~~i~lw~~~~~p~~~~all~~~ll~l~gv~~~~~~~~---~~~~---~~i~li~~~~~la~al~~tGl~~ri 196 (562)
|.=+.+++..+.+.+.+..|+.+.-+++..+....+.-+.||--+ .-+. ...-++++.=++...+++||..|.+
T Consensus 234 W~N~lLtl~lm~~Lv~gi~p~~~lFmig~~iAL~vNYP~vk~Q~~ri~aha~nal~vvs~i~AAGif~Gil~gtgMvdam 313 (433)
T COG2851 234 WFNLLLTLALMGLLVSGIFPPGVLFMIGFAIALPVNYPNVKEQMERIGAHAGNALMVVSLIFAAGIFLGILSGTGMVDAM 313 (433)
T ss_pred HHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHhCCCCHHHHHHHHHHhCcchhHHHHHHHHHHHHhhhhCCCchHHHH
Confidence 444666777777777888999999999988888888877765433 2222 3444566666677789999999999
Q ss_pred HHHHHHHhCCCh-hhHHHHHHHHHHHhhhcCCChhhhhhHhHHHHHHHHHHHcCCCCC
Q 008532 197 ATYFVKWLGKST-LGLSYGLTFSEALIAPAMPSTTARAGGVFLPIIKSLSLSAGSKPG 253 (562)
Q Consensus 197 a~~i~~~~g~~~-~~l~~~l~l~~~~ls~~~~s~~a~~~~i~~Pi~~~i~~~~g~~p~ 253 (562)
+..+.+.....- .-+.....+++.-+..+++|++=- .-++|++.+.+.++|.+|.
T Consensus 314 a~si~~vIP~~lgpyl~~ivgl~svP~tf~~snDAyY--fGvlPIv~e~as~yGv~pv 369 (433)
T COG2851 314 AKSIVSVIPDALGPYLPLIVGLLSVPFTFFMSNDAYY--FGVLPIVAEAASAYGVEPV 369 (433)
T ss_pred HHHHHHhCcHhhcchHHHHHHHHcCCeEEEecCcchh--hhhHHHHHHHHHHcCCCHH
Confidence 999998875422 234556666778888999888643 4689999999999999873
|
|
| >PF03806 ABG_transport: AbgT putative transporter family; InterPro: IPR004697 The p-aminobenzoyl-glutamate transporter family includes two putative transporters, the AbgT protein of Escherichia coli and MtrF of Neisseria gonorrhoeae | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.1 Score=56.18 Aligned_cols=157 Identities=16% Similarity=0.142 Sum_probs=109.9
Q ss_pred ChHHHHHhcc------chHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhCC---ChhhHHHHHHHHHHHhhhcCCChhh
Q 008532 161 AFPTAFAAFT------NEVIWLIVISFFFARGFVKTGLGDRIATYFVKWLGK---STLGLSYGLTFSEALIAPAMPSTTA 231 (562)
Q Consensus 161 ~~~~~~~~~~------~~~i~li~~~~~la~al~~tGl~~ria~~i~~~~g~---~~~~l~~~l~l~~~~ls~~~~s~~a 231 (562)
+.+|+.+... .+.+.+.+...-+-+.+++|++.+.+|-+-.+.+++ +...++.++.+.+.++..|+.|..|
T Consensus 323 s~~Dv~~~M~~~m~~m~~yiVL~F~aaQFia~F~~Snlg~i~Av~GA~~L~~~~~~~~~l~i~fill~a~iNLfi~S~Sa 402 (502)
T PF03806_consen 323 SDKDVVKMMSKGMKSMAPYIVLAFFAAQFIAYFNWSNLGTILAVKGAEFLKSLGLPGIPLIIGFILLTAFINLFIGSASA 402 (502)
T ss_pred CHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhhcchh
Confidence 5667655332 244455555555567899999999999888777643 5567888999999999999999999
Q ss_pred hhhHhHHHHHHHHHHHcCCCCCCCCcchhhhHHHHHhHHhhhhhcccccccchhHHHHHHHHHHcCCcccccHHHHHHHH
Q 008532 232 RAGGVFLPIIKSLSLSAGSKPGDSSSKKLGSYLIQSQFQSAGNSSALFLTAAAQNLLCLKLAEELGVIISSPWVSWFKAA 311 (562)
Q Consensus 232 ~~~~i~~Pi~~~i~~~~g~~p~~~~~~~~~~~l~l~~~~~~~~~g~~t~~g~~~n~i~~g~~~~~G~~i~~~~~~w~~~~ 311 (562)
.= +++.|++.++.-.+|++|. ....+-=.+=+.....||.- +--+++.+++++...+.+ .++....+
T Consensus 403 KW-ailAPifVPM~m~lg~sP~---------~tQ~aYRigDS~TN~ItPl~-~yf~lil~~~qkY~k~~g--iGTlis~m 469 (502)
T PF03806_consen 403 KW-AILAPIFVPMFMLLGYSPA---------LTQAAYRIGDSSTNIITPLM-PYFPLILGFAQKYDKKAG--IGTLISLM 469 (502)
T ss_pred hH-HHHHhHHHHHHHHcCCCHH---------HHHHHHHhccccccccCccH-HHHHHHHHHHHHhCcCcc--HHHHHHHH
Confidence 87 5999999999999999984 11111112222233344432 223567788887665677 88999999
Q ss_pred HHHHHHHHHHHHHHHHHhc
Q 008532 312 CVPALVALLATPLILYKLY 330 (562)
Q Consensus 312 ~~~~li~~~~~~~~~~~~~ 330 (562)
+|.++..++........|+
T Consensus 470 lPysi~~lv~w~~ll~~W~ 488 (502)
T PF03806_consen 470 LPYSIAFLVVWTLLLIVWY 488 (502)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999887776665554444
|
AbgT expression is apparently cryptic in wild type cells, but when present on a high copy number plasmid, or when expressed at higher levels due to mutation, it allows utilization of p-aminobenzoyl-glutamate as a source of p-aminobenzoate for p-aminobenzoate auxotrophs []. p-Aminobenzoate is a constituent of, and a precursor for, the biosynthesis of folic acid. It is not currently known if AbgT is naturally involved in transporting p-aminobenzoyl-glutamate, or if it only becomes involved when under altered regulation. MtrF is an inner membrane protein which, together with the MtrCDE efflux pump, is required for high-level resistance to hydrophobic antimicrobial agents in N. gonorrhoeae []. Its role in this process is not known, but it has been suggested that it may be a component of the efflux pump which is dispensible for basal activity, but required for high-level activity []. |
| >PF07399 DUF1504: Protein of unknown function (DUF1504); InterPro: IPR009978 This family consists of several hypothetical bacterial proteins of around 440 residues in length | Back alignment and domain information |
|---|
Probab=96.57 E-value=1.2 Score=46.45 Aligned_cols=320 Identities=16% Similarity=0.201 Sum_probs=147.4
Q ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHHhCC-ChhhHHHHHHHHHHHhhhcCCChhhhhhHhHHHHHHHHHHHc-CCCCC
Q 008532 176 LIVISFFFARGFVKTGLGDRIATYFVKWLGK-STLGLSYGLTFSEALIAPAMPSTTARAGGVFLPIIKSLSLSA-GSKPG 253 (562)
Q Consensus 176 li~~~~~la~al~~tGl~~ria~~i~~~~g~-~~~~l~~~l~l~~~~ls~~~~s~~a~~~~i~~Pi~~~i~~~~-g~~p~ 253 (562)
+++..+++++.=---.+.++..+.+.+ .++ ++...-+..+.+.=+++.++....|. .+...+ +.++. ..++.
T Consensus 103 FVfvIMviA~SrPIl~~a~~~v~~iAr-lp~~s~~a~~~~~L~~~PLlGSfITEpaAM---TlaAll--L~~~~f~~~~s 176 (438)
T PF07399_consen 103 FVFVIMVIAASRPILQFAERLVRFIAR-LPKPSPVAWWWLILTLVPLLGSFITEPAAM---TLAALL--LRDQFFRLGPS 176 (438)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHHh-CCCCCchhHHHHHHHHHHhhhhhhccHHHH---HHHHHH--HHHHhccCCCC
Confidence 333444444322223345555555555 554 55555555666666777777666543 222222 23443 33321
Q ss_pred CCCcchhhhHHHHHhHH-hhhhhcccccccchhHHHHHHHHHHcCCcccccHHHHHHH-HHH-HHHHHHHHHHHHHHHhc
Q 008532 254 DSSSKKLGSYLIQSQFQ-SAGNSSALFLTAAAQNLLCLKLAEELGVIISSPWVSWFKA-ACV-PALVALLATPLILYKLY 330 (562)
Q Consensus 254 ~~~~~~~~~~l~l~~~~-~~~~~g~~t~~g~~~n~i~~g~~~~~G~~i~~~~~~w~~~-~~~-~~li~~~~~~~~~~~~~ 330 (562)
+|+ +|.-+++-+ --++||..|.+++||-.+.++- .+ |..++.. .+- =+.+.+++.-...++++
T Consensus 177 ----~~l-kYaTLGvLFvNISIGGtLT~fAAPPVLMVA~~-------w~--Wd~~fM~~~FGWKAaiai~ina~~~~~~f 242 (438)
T PF07399_consen 177 ----PRL-KYATLGVLFVNISIGGTLTSFAAPPVLMVAST-------WG--WDSAFMLTHFGWKAAIAILINATVYTLLF 242 (438)
T ss_pred ----HHH-HHHHHHHHheEeeecccccccccCcceeEecc-------cC--CChHHHHHHcCHHHHHHHHHHHHHHHHHH
Confidence 222 345555433 3457899999998876665432 22 3332221 111 12233444555556667
Q ss_pred CCCCCCCCChhHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHhCCcChHHHhhccCC
Q 008532 331 PPEVKDTPDAPAMAAKKLKQLGPVTRNEWIMVGTMLLAVSLWIFGDALGIPSVVAAMIGLSILLLLGVLDWDDCLSEKSA 410 (562)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~g~~t~~e~~~l~i~~~~i~l~i~~~~~gi~~~~vall~~~ll~~~gvl~~~~~~~~~i~ 410 (562)
|+|.++.++.++. .+ ++.+++. -+..++=++. +..-++ . |+ + +..+|++.+++.|.-+.-+-.|+++.
T Consensus 243 Rkel~~l~~~~~~-~~--~~~~~vP--~~v~~vHl~f-~g~V~~-a-hh--p--~iF~G~lfLfFLGf~~ay~~yQ~~l~ 310 (438)
T PF07399_consen 243 RKELARLPKTAQA-TT--SSEERVP--WWVILVHLLF-VGVVVF-A-HH--P--VIFMGALFLFFLGFTQAYKRYQSPLI 310 (438)
T ss_pred HHHHHhccccccc-cc--cccCCCC--HHHHHHHHHH-HHHHHH-h-cC--h--HHHHHHHHHHHHHHHHHHHhhccchh
Confidence 7665433321110 00 0111121 1222221222 111112 2 21 2 23566455555553222222223333
Q ss_pred hhHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHhhccCCCchHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHc
Q 008532 411 WDTLAWFAVLVGMAGQLTNLGIVTWMSDSVAKCLQSFSLSWPAAFGVLQASYFLIHYLFASQTGHVGALYSAFLAMHLAA 490 (562)
Q Consensus 411 w~~l~l~~~~~~l~~~l~~tGi~~~ia~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~f~S~~a~~~il~Pi~~~la~~~ 490 (562)
..--+++ ++-+++....-|..+|--+-+...+++ ...+ ... ...+.|.+|.+...+ .++ --
T Consensus 311 Lre~lLV--gFFLaGLVvlGglQ~WWlqpll~~m~~-----~~lf---~ga--~~LTa~tDNAalTYL-----gsl--v~ 371 (438)
T PF07399_consen 311 LREALLV--GFFLAGLVVLGGLQQWWLQPLLSGMSP-----LALF---FGA--TALTAFTDNAALTYL-----GSL--VP 371 (438)
T ss_pred hhHHHHH--HHHHhhHHHcCchHHHHHHHHHhcCCh-----hHHH---HHH--HHHHHHhhhHHHHHH-----HHh--cc
Confidence 3322222 222334444557788865544443332 1111 122 223347888765422 111 12
Q ss_pred CCCHHHHHHHHHHHHhhhhhhccccchhhHHhhc-------CCCCCHHHHHHHhHHHHHHHHHH
Q 008532 491 GVPGVLAALALAYNTNLFGAITHYSSGQAAVYYG-------AGYIDLPDVFKMGFTMALVNAII 547 (562)
Q Consensus 491 Gv~p~~~~l~l~~~~~~~~~~tP~~s~~n~i~~~-------~g~i~~~d~~k~g~~~~li~~vi 547 (562)
|.+...= .++..++-.+|-+|-+++.||..-+. -+.++....+...++.++++...
T Consensus 372 g~sd~~k-YalVAGAVtGGGLTVIANAPNpaG~aiLr~~F~d~~Is~~~L~l~AL~PT~ia~~~ 434 (438)
T PF07399_consen 372 GLSDAFK-YALVAGAVTGGGLTVIANAPNPAGQAILRKHFPDGSISPLGLFLAALPPTLIAALA 434 (438)
T ss_pred CCCHHHH-HHHHhheeccCceeEeccCCChhhHHHHhccCCCCCcChHHHHHHHHhHHHHHHHH
Confidence 3443221 12223333478889999999976543 24588888888888888877655
|
The function of this family is unknown. |
| >PF06166 DUF979: Protein of unknown function (DUF979); InterPro: IPR009323 This family consists of several putative bacterial membrane proteins | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.61 Score=46.58 Aligned_cols=141 Identities=12% Similarity=0.034 Sum_probs=81.4
Q ss_pred cCChhHHH-HHHHHHHHHHHHHHhCHHHHHHHHHHHhhccCCCchHHHHHHHHHHHHHHHHHhchhHHHH--HHHHHHHH
Q 008532 408 KSAWDTLA-WFAVLVGMAGQLTNLGIVTWMSDSVAKCLQSFSLSWPAAFGVLQASYFLIHYLFASQTGHV--GALYSAFL 484 (562)
Q Consensus 408 ~i~w~~l~-l~~~~~~l~~~l~~tGi~~~ia~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~f~S~~a~~--~il~Pi~~ 484 (562)
.+.|..++ -+ .-++|...++.|+.|.+++.+.+..+..+. . .-++..++.....+.++-|.=++ ++..-|-+
T Consensus 159 ~vG~a~iLPQl--LAaLG~vF~~AGVG~vIa~lv~~viP~g~~--~-~~ViaYclGMalFTmIMGNAFAAF~ViTaGIGi 233 (308)
T PF06166_consen 159 QVGWAAILPQL--LAALGAVFTAAGVGDVIASLVSSVIPEGNR--F-IGVIAYCLGMALFTMIMGNAFAAFPVITAGIGI 233 (308)
T ss_pred HhhHHHHHHHH--HHHHHHHHHhcCccHHHHHHHHhhcCCCCe--e-hhHHHHHHHHHHHHHHHccHHHHhHHHHhccCc
Confidence 56676554 11 234778899999999999999998876432 2 22333334344445556664332 23333344
Q ss_pred HHH-HHcCCCHHHHHHHHHHHHhhh-hhhccccchhhHHhhcC-CCCCHHHHHHHhHHHHHHHHHHHHHHHHH
Q 008532 485 AMH-LAAGVPGVLAALALAYNTNLF-GAITHYSSGQAAVYYGA-GYIDLPDVFKMGFTMALVNAIIWGVTGTF 554 (562)
Q Consensus 485 ~la-~~~Gv~p~~~~l~l~~~~~~~-~~~tP~~s~~n~i~~~~-g~i~~~d~~k~g~~~~li~~vi~~~v~~~ 554 (562)
|+. ++.|-||...+. +++-++.| ..+||...--|.+-... +--|-...+|.=.|.+++.+++-++..|.
T Consensus 234 Pfvi~~~GgnPaivgA-lgM~aGyCGTLmTPMAANFNiVPaALLElkDk~gVIKaQ~p~Al~llvv~I~LMy~ 305 (308)
T PF06166_consen 234 PFVIAQFGGNPAIVGA-LGMTAGYCGTLMTPMAANFNIVPAALLELKDKYGVIKAQAPTALVLLVVNIVLMYF 305 (308)
T ss_pred eEEEecCCCCHHHHHH-HHHhhcchhcccChhhhhcCcchHHHhcCCccccchhhhhHHHHHHHHHHHHHHHH
Confidence 443 345888876542 33333333 35689876666543321 11234456777788888887777666554
|
The function of this family is unclear. |
| >PF04165 DUF401: Protein of unknown function (DUF401) ; InterPro: IPR007294 Members of this family are predicted to have 10 transmembrane regions | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.67 Score=48.91 Aligned_cols=158 Identities=19% Similarity=0.240 Sum_probs=92.9
Q ss_pred CCChHHHHHHHHHHHHHhcCCChH---HHHH-hccchHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhCCChhhHHHHH
Q 008532 140 PLPVGAWAFLGLTTSIVTRTLAFP---TAFA-AFTNEVIWLIVISFFFARGFVKTGLGDRIATYFVKWLGKSTLGLSYGL 215 (562)
Q Consensus 140 ~~p~~~~all~~~ll~l~gv~~~~---~~~~-~~~~~~i~li~~~~~la~al~~tGl~~ria~~i~~~~g~~~~~l~~~l 215 (562)
++|.....+.+.......+..+.+ +++. .+.+..++.+.+.+++-+.++.||..+.+++.+.+. +-| ....+
T Consensus 219 ~l~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~a~~~ki~~~i~~im~Fk~~l~~tG~~~~l~~~l~~~--~ip--~~li~ 294 (385)
T PF04165_consen 219 KLPLALGLLIALLAILIYNRFRRKEIKEVLKEALEPKILLLIIGIMIFKEILEATGVVEELPEFLSSL--GIP--PFLII 294 (385)
T ss_pred cchHHHHHHHHHHHHHHHhccCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHhC--CCc--HHHHH
Confidence 466544433343344444555665 5554 678899999999999999999999999998877752 222 33334
Q ss_pred HHHHHHhhhcCCChhhhhhHhHHHHHHHHHHHcCCCCCCCCcchhhhHHHHHhHHhhhh-hcccccccchhHHHHHHHHH
Q 008532 216 TFSEALIAPAMPSTTARAGGVFLPIIKSLSLSAGSKPGDSSSKKLGSYLIQSQFQSAGN-SSALFLTAAAQNLLCLKLAE 294 (562)
Q Consensus 216 ~l~~~~ls~~~~s~~a~~~~i~~Pi~~~i~~~~g~~p~~~~~~~~~~~l~l~~~~~~~~-~g~~t~~g~~~n~i~~g~~~ 294 (562)
.+..++.+...+.+.|.+ ++-+|++.++... . .++. .++.++. |.+.+| .+ ++.-+..
T Consensus 295 ~lipFivG~~TGi~~a~v-gi~fPll~~l~~~----~---------~~~~--la~~~g~~GvmlSP----~H-lCLvlT~ 353 (385)
T PF04165_consen 295 ALIPFIVGLITGITQAFV-GIAFPLLAPLIGG----L---------PYLV--LAYASGFAGVMLSP----VH-LCLVLTA 353 (385)
T ss_pred HHHHHHHHHHHhHHHHHH-HHHHHHHHHhccc----c---------hHHH--HHHHHHHHHHhhch----HH-HHHHHHH
Confidence 444555555555555555 5888998877432 1 1222 2333333 333333 33 3333333
Q ss_pred HcCCcccccHHHHHHHHHHHHHHHHHHHHHH
Q 008532 295 ELGVIISSPWVSWFKAACVPALVALLATPLI 325 (562)
Q Consensus 295 ~~G~~i~~~~~~w~~~~~~~~li~~~~~~~~ 325 (562)
| -++.+ +.+-.+.-+++.++..+...++
T Consensus 354 e-YFk~~--~~~v~k~l~~p~~i~~~~~~~~ 381 (385)
T PF04165_consen 354 E-YFKAD--LGKVYKKLLPPALIFLAAGLLY 381 (385)
T ss_pred H-Hhccc--HHHHHHHHHHHHHHHHHHHHHH
Confidence 3 12355 7788888888876655544443
|
|
| >COG2704 DcuB Anaerobic C4-dicarboxylate transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.025 Score=57.64 Aligned_cols=163 Identities=17% Similarity=0.155 Sum_probs=105.3
Q ss_pred CCChHHHHHHHHHHHHHhCCcChHHHhhccCChhHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHhhccCCCchHHHHHHH
Q 008532 379 GIPSVVAAMIGLSILLLLGVLDWDDCLSEKSAWDTLAWFAVLVGMAGQLTNLGIVTWMSDSVAKCLQSFSLSWPAAFGVL 458 (562)
Q Consensus 379 gi~~~~vall~~~ll~~~gvl~~~~~~~~~i~w~~l~l~~~~~~l~~~l~~tGi~~~ia~~l~~~~~~~~~~~~~~~~~l 458 (562)
|+..+...-+|++++.+..-++ - .+.++|+++.+.+.++-+.+|+.+|-.|++.+.-.+.+..+|.- .-++.=
T Consensus 21 GIglG~~GGlGv~il~f~f~~~--P---~~~PidViliImAVv~aaaamQaaGGLD~mvqiAEkiLRknPK~--iT~lAP 93 (436)
T COG2704 21 GIGLGVAGGLGVLILVFIFGLK--P---GKPPIDVILIIMAVVAAAAAMQAAGGLDYMVQIAEKILRKNPKY--ITILAP 93 (436)
T ss_pred ceeeeecccccHHHHhhhhcCC--C---CCCChhhHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHhCCCe--EEEehh
Confidence 4666666677777665533232 2 36899999999999999999999999999999999999887652 111111
Q ss_pred HHHHHHHHHHhchhHHHH-HHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhhhhhccccchhhHHhh--cCCCCCHHHHHH
Q 008532 459 QASYFLIHYLFASQTGHV-GALYSAFLAMHLAAGVPGVLAALALAYNTNLFGAITHYSSGQAAVYY--GAGYIDLPDVFK 535 (562)
Q Consensus 459 ~~~~~~~~~~f~S~~a~~-~il~Pi~~~la~~~Gv~p~~~~l~l~~~~~~~~~~tP~~s~~n~i~~--~~g~i~~~d~~k 535 (562)
.+.+.+. ++..|+++ .-.+|+...+++.-|+.|.--.-+-..++...-...|++.....+.. ..-++++.+..-
T Consensus 94 ~Vty~lT---~maGTGh~vySilPVI~eVA~~~gIrPeRPls~avVsSQ~aItASPISAAVV~~~a~l~~~g~~~l~ll~ 170 (436)
T COG2704 94 FVTYTLT---ILAGTGHVVYSILPVIAEVAKKNGIRPERPLSAAVVSSQIAITASPISAAVVYMSAVLEPLGISYLTLLM 170 (436)
T ss_pred HHHHHHH---HhhcCCceeeeehhHHHHHHHHcCCCCCCcchHHHHHhhhhhhcCchHHHHHHHHHHHhhcCcchheeee
Confidence 2233222 67778776 57889999999999998743222223334333334577544333221 112234666666
Q ss_pred HhHHHHHHHHHHHHHH
Q 008532 536 MGFTMALVNAIIWGVT 551 (562)
Q Consensus 536 ~g~~~~li~~vi~~~v 551 (562)
..+|-+++...+..+.
T Consensus 171 v~IPaTl~g~~~~~l~ 186 (436)
T COG2704 171 VTIPSTLLGVLLMALF 186 (436)
T ss_pred EEecHHHHHHHHHHHH
Confidence 7778887777665443
|
|
| >TIGR00366 conserved hypothetical integral membrane protein | Back alignment and domain information |
|---|
Probab=95.21 E-value=0.54 Score=49.94 Aligned_cols=92 Identities=17% Similarity=0.169 Sum_probs=62.8
Q ss_pred CCChHHHHHhccc------hHHHHHHHHHHHHHHHHHhCHHH-----HHHHHHHHHhCCChhhHHHHHHHHHHHhhhcCC
Q 008532 159 TLAFPTAFAAFTN------EVIWLIVISFFFARGFVKTGLGD-----RIATYFVKWLGKSTLGLSYGLTFSEALIAPAMP 227 (562)
Q Consensus 159 v~~~~~~~~~~~~------~~i~li~~~~~la~al~~tGl~~-----ria~~i~~~~g~~~~~l~~~l~l~~~~ls~~~~ 227 (562)
..+++|..+.+.+ ...+.+...--+...++++|+.+ .+++.+.+.. +.........+...++..|+|
T Consensus 291 ~~tp~~~~~a~~~g~~~~~gi~l~fpf~agI~~im~~s~l~~~~ls~~la~~lvs~a--~~~~f~l~~~l~~~liNfFIP 368 (438)
T TIGR00366 291 HKTPMAYMRAITRAARSVAGILVQFPFYAGIMGMMEHSGVGGGGPATLITEFFINVA--NKDTFPLMTFFSAGLINIFIP 368 (438)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccchHHHHHHHHHHhhC--CccHHHHHHHHHHHHHHhccc
Confidence 4566665544422 22333333333345568888888 7776665543 333455555689999999999
Q ss_pred ChhhhhhHhHHHHHHHHHHHcCCCCC
Q 008532 228 STTARAGGVFLPIIKSLSLSAGSKPG 253 (562)
Q Consensus 228 s~~a~~~~i~~Pi~~~i~~~~g~~p~ 253 (562)
|..+.. ++..|++.++++.+|.+|.
T Consensus 369 SGsGqw-ai~aPImvP~a~~LGvs~~ 393 (438)
T TIGR00366 369 SGGGHW-AIQGPIVIPAAQALGVDLG 393 (438)
T ss_pred CchHHH-HHHHHHHHHHHHHcCCCHH
Confidence 999998 5999999999999999873
|
|
| >COG2978 AbgT Putative p-aminobenzoyl-glutamate transporter [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=95.08 E-value=1.6 Score=46.19 Aligned_cols=158 Identities=19% Similarity=0.175 Sum_probs=102.5
Q ss_pred ChHHHHHhccc---hHHHHHHHHHHHH---HHHHHhCHHHHHHHHHHHHh---CCChhhHHHHHHHHHHHhhhcCCChhh
Q 008532 161 AFPTAFAAFTN---EVIWLIVISFFFA---RGFVKTGLGDRIATYFVKWL---GKSTLGLSYGLTFSEALIAPAMPSTTA 231 (562)
Q Consensus 161 ~~~~~~~~~~~---~~i~li~~~~~la---~al~~tGl~~ria~~i~~~~---g~~~~~l~~~l~l~~~~ls~~~~s~~a 231 (562)
+.||+.+..++ +..-.+.-.|..+ +.++.|++...+|-+-.+.. |-+-..+.+++.+.+.++..++.|..|
T Consensus 335 ~~kDvv~~M~~~m~sMg~yiV~~FfaaQFva~FnwSn~G~~~AV~GA~~L~~~gl~g~~lil~~illsa~inL~IgSASA 414 (516)
T COG2978 335 NDKDVVNMMAESMSSMGGYIVIAFFAAQFVAFFNWSNLGTIMAVKGADFLKAIGLTGLPLILGFILLSAFINLFIGSASA 414 (516)
T ss_pred ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcccccchhheechHhHHHHcCCCCcHHHHHHHHHHHHHHHHHhhHHH
Confidence 44566553322 2233333333333 56789999999987666554 334456788899999999999999998
Q ss_pred hhhHhHHHHHHHHHHHcCCCCCCCCcchhhhHHHHHhHHhhhhhcccccccchhHHHHHHHHHHcCCcccccHHHHHHHH
Q 008532 232 RAGGVFLPIIKSLSLSAGSKPGDSSSKKLGSYLIQSQFQSAGNSSALFLTAAAQNLLCLKLAEELGVIISSPWVSWFKAA 311 (562)
Q Consensus 232 ~~~~i~~Pi~~~i~~~~g~~p~~~~~~~~~~~l~l~~~~~~~~~g~~t~~g~~~n~i~~g~~~~~G~~i~~~~~~w~~~~ 311 (562)
.= .++.|++.++...+|++|. ..-.+-=.+-+.....||.-+ --+++.+++++..-+.. .+.....+
T Consensus 415 kW-ailaPIfVPMlMllGysPe---------~tQaayRigDS~tniiTPlm~-yfpLil~~~~kY~k~~G--vGTL~s~m 481 (516)
T COG2978 415 KW-AILAPIFVPMLMLLGYSPE---------FTQAAYRIGDSVTNIITPLMP-YFPLILAYAQKYDKDAG--VGTLMSMM 481 (516)
T ss_pred HH-HHHhhHHHHHHHHhcCCHH---------HHHHHHHhcccccccccchhh-hHHHHHHHHHHhCcCcc--HHHHHHHh
Confidence 87 5999999999999999984 111111123333334444322 22456667776554556 78888888
Q ss_pred HHHHHHHHHHHHHHHHHhcC
Q 008532 312 CVPALVALLATPLILYKLYP 331 (562)
Q Consensus 312 ~~~~li~~~~~~~~~~~~~~ 331 (562)
+|-++...+...+..+.||-
T Consensus 482 LPYsi~f~i~w~~l~~iw~~ 501 (516)
T COG2978 482 LPYSIAFLIAWTLLLLIWFL 501 (516)
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 88888777766665555543
|
|
| >COG3819 Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.90 E-value=3.3 Score=38.63 Aligned_cols=195 Identities=18% Similarity=0.213 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhcCCChHHHHH----hccch-HHHHHHHHHHHHHHHHHhCHHHHHHHH
Q 008532 125 LLSIFLSTIAGLVLSPLPVGAWAFLGLTTSIVTRTLAFPTAFA----AFTNE-VIWLIVISFFFARGFVKTGLGDRIATY 199 (562)
Q Consensus 125 ~l~i~~~~i~lw~~~~~p~~~~all~~~ll~l~gv~~~~~~~~----~~~~~-~i~li~~~~~la~al~~tGl~~ria~~ 199 (562)
-+.-....+++++++--|..++...++.--+..| +++.++++ +|.++ .+-.+.-..-+-..+|+-|+=+|--++
T Consensus 5 ~LigI~iIVlGFiLk~n~~lvVv~agi~tglvsg-~~~~~~l~~lGk~f~n~R~l~i~~l~LpligllEr~GLrerA~~~ 83 (229)
T COG3819 5 PLIGIAIIVLGFILKFNPILVVVVAGIVTGLVSG-MSFVEVLEILGKEFVNNRYLTIIWLILPLIGLLERHGLRERAQNL 83 (229)
T ss_pred HHhhHHHHHHHHHHhcCchhHHHHHHHHHHHHcc-CCHHHHHHHHhHHHhcCchHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 3333344455555554444444444444434444 56655544 44442 222222225556778999998887777
Q ss_pred HHHHhCCChhhHHHHHHH---HHHHhhhcCCChhhhhhHhHHHHHHHHHHHc-----CCCCCCCCcchhhhHHHHHhHHh
Q 008532 200 FVKWLGKSTLGLSYGLTF---SEALIAPAMPSTTARAGGVFLPIIKSLSLSA-----GSKPGDSSSKKLGSYLIQSQFQS 271 (562)
Q Consensus 200 i~~~~g~~~~~l~~~l~l---~~~~ls~~~~s~~a~~~~i~~Pi~~~i~~~~-----g~~p~~~~~~~~~~~l~l~~~~~ 271 (562)
+.+.-.-+..+++....+ ++..++.- |-..|. -+.=|++.++++.. |--+ ++.+.|... ++ +..
T Consensus 84 I~~ik~aT~Grll~~Yl~iRelaaa~gl~--sLgGHp-Q~VRPLlaPMaEaAAe~~~g~Lt-e~~~~~ikA---~s-Aat 155 (229)
T COG3819 84 IQKIKAATVGRLLTVYLFIRELAAALGLT--SLGGHP-QMVRPLLAPMAEAAAESRFGKLT-EKERQKIKA---MS-AAT 155 (229)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHhchh--hhCCCh-hhhhHhhhhHHHHHhhhhcccCC-hhHHHHHHH---HH-hhc
Confidence 776533344444444333 22332221 122222 23445555554432 3112 222223221 11 111
Q ss_pred hhhh---cccccccchhHHHHHHHHHHcCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 008532 272 AGNS---SALFLTAAAQNLLCLKLAEELGVIISSPWVSWFKAACVPALVALLATPLILYKLY 330 (562)
Q Consensus 272 ~~~~---g~~t~~g~~~n~i~~g~~~~~G~~i~~~~~~w~~~~~~~~li~~~~~~~~~~~~~ 330 (562)
-|.| +--+..+.+.-.++.+++++.|++.+ ...-..+++|.+++.+++.....|.+-
T Consensus 156 dNvg~FFgediFva~g~illi~~fl~q~Gi~~e--pl~ia~w~IptaI~a~iIh~~rl~lfD 215 (229)
T COG3819 156 DNVGLFFGEDIFVAAGSILLIHGFLEQSGIDVE--PLHIAVWAIPTAIIAFIIHAIRLYLFD 215 (229)
T ss_pred chhhhhhhhhHHHHhhhHHHHHHHHHhcCCccc--chhhhHHHhHHHHHHHHHHHHHHHHHH
Confidence 1111 22233444455667788888898877 777777888888888777776666553
|
|
| >COG3069 DcuC C4-dicarboxylate transporter [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=94.85 E-value=0.98 Score=46.48 Aligned_cols=144 Identities=17% Similarity=0.147 Sum_probs=90.2
Q ss_pred hhHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHhhccCCCchHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHc
Q 008532 411 WDTLAWFAVLVGMAGQLTNLGIVTWMSDSVAKCLQSFSLSWPAAFGVLQASYFLIHYLFASQTGHVGALYSAFLAMHLAA 490 (562)
Q Consensus 411 w~~l~l~~~~~~l~~~l~~tGi~~~ia~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~f~S~~a~~~il~Pi~~~la~~~ 490 (562)
-+.-+.+.+..++++.++++|..+.+.+.+.+=++... ++..++....++..+....+.|.++...+++--..|+-.+.
T Consensus 73 agLgm~Im~~~GfA~yM~~iga~~~~V~l~skPL~~ik-spy~ll~~ay~i~~~m~~ai~SAtGlg~llmaTLfPvlv~~ 151 (451)
T COG3069 73 AGLGMMIMALCGFARYMTHIGANDAVVKLASKPLKYIK-SPYLLLIAAYFVACLMSLAIPSATGLGVLLMATLFPVLVNL 151 (451)
T ss_pred ccHHHHHHHhhcHHHHHHHhChhHHHHHHHhchhhhhc-ccHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHh
Confidence 45667777888899999999999999998887665432 23333333334444555568888888888877788888889
Q ss_pred CCCHHHHHHHHHHHHhhhhhhccccchhhHHhhcCCCCCHHHHH-HHhHHHHHHHHHHHHHHHHHHHHH
Q 008532 491 GVPGVLAALALAYNTNLFGAITHYSSGQAAVYYGAGYIDLPDVF-KMGFTMALVNAIIWGVTGTFWWKF 558 (562)
Q Consensus 491 Gv~p~~~~l~l~~~~~~~~~~tP~~s~~n~i~~~~g~i~~~d~~-k~g~~~~li~~vi~~~v~~~~w~~ 558 (562)
|++....+- ++-+. .+..+.|.+ +...++....+.+..|+. ++-.|.+++..+.....-++|-++
T Consensus 152 Gvsr~aaaA-i~Ast-~~i~lsp~s-~~sv~aAe~sgm~i~~~~~~~~lpv~i~~iI~~ai~hff~qr~ 217 (451)
T COG3069 152 GVSRGAAAA-ICAST-AAIILSPTS-GDSVLAAQVSGMKIADFAFHYQLPVSIAAIIGMAIAHFFWQRY 217 (451)
T ss_pred cccchhhHH-Hhhch-HHheeCCCC-cchHHHHHhcCCceEeeeeccCcHHHHHHHHHHHHHHHHHHHH
Confidence 999554332 22222 233445554 434455555566666654 455666666555554444454443
|
|
| >PF02652 Lactate_perm: L-lactate permease; InterPro: IPR003804 L-lactate permease is an integral membrane protein probably involved in L-lactate transport | Back alignment and domain information |
|---|
Probab=94.07 E-value=4 Score=45.03 Aligned_cols=136 Identities=15% Similarity=0.105 Sum_probs=89.1
Q ss_pred cchHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhhhcCCChhhhhhHhHHHHHHHHHHHcC
Q 008532 170 TNEVIWLIVISFFFARGFVKTGLGDRIATYFVKWLGKSTLGLSYGLTFSEALIAPAMPSTTARAGGVFLPIIKSLSLSAG 249 (562)
Q Consensus 170 ~~~~i~li~~~~~la~al~~tGl~~ria~~i~~~~g~~~~~l~~~l~l~~~~ls~~~~s~~a~~~~i~~Pi~~~i~~~~g 249 (562)
.++..+-+...+.+++.++.+|...-+++.+.+ .|.-+..+.-. ++.+=+++.+|+++-- +++.++=...+++.|
T Consensus 385 ~~~~~i~~~~~~~~a~vm~~SGm~~~la~~~a~-~G~~yp~~aP~---lG~lG~FiTGS~T~SN-~lF~~lQ~~~A~~lg 459 (522)
T PF02652_consen 385 LWPPAIAIIFFLALAYVMNYSGMTATLALALAA-TGAAYPFFAPF---LGWLGSFITGSNTSSN-ALFGPLQVTTAQQLG 459 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH-hCccHHHHHHH---HHHHhcccccchHHHH-HHHHHHHHHHHHHcC
Confidence 357778888888999999999999999998888 77644333333 3444445556666544 588888889999999
Q ss_pred CCCCCCCcchhhhHHHHHhHHhhhhhcccccccchhHHHHHHHHHHcCCcccccHHHHHHHHHHHHHHHHHHHHHHHH
Q 008532 250 SKPGDSSSKKLGSYLIQSQFQSAGNSSALFLTAAAQNLLCLKLAEELGVIISSPWVSWFKAACVPALVALLATPLILY 327 (562)
Q Consensus 250 ~~p~~~~~~~~~~~l~l~~~~~~~~~g~~t~~g~~~n~i~~g~~~~~G~~i~~~~~~w~~~~~~~~li~~~~~~~~~~ 327 (562)
.+|. .+.-....+++.|.+. +++|+......- |..=. =++-++..++++++..++..++.+
T Consensus 460 l~~~---------l~~Aaq~~Gg~~g~mI----sp~~i~~a~a~~--g~~g~--Eg~ilr~t~~~~l~~~~i~g~~~~ 520 (522)
T PF02652_consen 460 LPPL---------LIAAAQNVGGAMGNMI----SPQNIVAAAAAV--GLSGK--EGEILRKTLPPSLIYALIVGLLVF 520 (522)
T ss_pred CCHH---------HHHHHHHHHHHHHhcc----CHHHHHHHHHHh--cCCCc--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9862 2222233333333333 357776654332 32212 467888899998887776665544
|
; GO: 0015129 lactate transmembrane transporter activity, 0015727 lactate transport |
| >COG4664 FcbT3 TRAP-type mannitol/chloroaromatic compound transport system, large permease component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=93.78 E-value=2.4 Score=43.21 Aligned_cols=171 Identities=12% Similarity=0.093 Sum_probs=105.4
Q ss_pred HHHHHHHhhcCCChHHHHHHHHH-HHHHhcCCChHHHHH------hccchHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Q 008532 130 LSTIAGLVLSPLPVGAWAFLGLT-TSIVTRTLAFPTAFA------AFTNEVIWLIVISFFFARGFVKTGLGDRIATYFVK 202 (562)
Q Consensus 130 ~~~i~lw~~~~~p~~~~all~~~-ll~l~gv~~~~~~~~------~~~~~~i~li~~~~~la~al~~tGl~~ria~~i~~ 202 (562)
+.++.+=+..+-..+..+-.+.. +...-|-++||...+ +.++-+.+.+.|.-.++..+.-.|-+.|+-+++.+
T Consensus 247 LGtIf~GiaTpTE~gA~G~~GA~~LA~~~~~l~w~~~~~a~~~T~k~tsmV~~IllGa~~FSlvF~g~~G~~~ve~~l~~ 326 (447)
T COG4664 247 LGTIFFGIATPTEGGAVGAVGALLLALANGRLNWQMVKQALDATAKLTSMVLFILLGATVFSLVFYGLNGHAWVEHLLTN 326 (447)
T ss_pred HHHHHhcccCCcccchhhHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhheeecCchHHHHHHHhc
Confidence 33444444444333443333333 344467889875433 44566788889999999999888989988888776
Q ss_pred HhCCChhhHHHHHHHHHHHhhhcCCChhhhhhHhHHHHHHHHHHHcCCCCCCCCcchhhhHHHHHhHHhhhhhcc-cccc
Q 008532 203 WLGKSTLGLSYGLTFSEALIAPAMPSTTARAGGVFLPIIKSLSLSAGSKPGDSSSKKLGSYLIQSQFQSAGNSSA-LFLT 281 (562)
Q Consensus 203 ~~g~~~~~l~~~l~l~~~~ls~~~~s~~a~~~~i~~Pi~~~i~~~~g~~p~~~~~~~~~~~l~l~~~~~~~~~g~-~t~~ 281 (562)
.= +.+.+.++......++++.|..-.. .+ .+..|+..++++++|.|+ ...++..+.|.-.. ++|.
T Consensus 327 lp-gg~igFli~~~~~iF~LgffldffE-ia-fIivPllaPva~~lgIDl-----------iwfGVll~~NlQtSFl~PP 392 (447)
T COG4664 327 LP-GGEIGFLIVSNILIFFLGFFLDFFE-IA-FIIVPLLAPVADKLGIDL-----------IWFGVLLGVNLQTSFLHPP 392 (447)
T ss_pred CC-CCceeeehHHHHHHHHHHHHHHHHH-HH-HHHHHhhHHHHHHcCCcH-----------HHHHHHHHHhhhhhccCCC
Confidence 64 4556677777777788888876554 34 589999999999999985 45555566655432 2221
Q ss_pred cchhHHHHHHHHHH-cCCcccccHHHHHHHHHHHHHHHHH
Q 008532 282 AAAQNLLCLKLAEE-LGVIISSPWVSWFKAACVPALVALL 320 (562)
Q Consensus 282 g~~~n~i~~g~~~~-~G~~i~~~~~~w~~~~~~~~li~~~ 320 (562)
-+-+. =++.. +-.+++ ..|-.+-..|..++-++
T Consensus 393 -fgfsl---fYLrgVAp~~VT--t~qIy~G~vPfiliqvl 426 (447)
T COG4664 393 -FGFSL---FYLRGVAPPSVT--TGQIYRGAVPFILIQVL 426 (447)
T ss_pred -chhhH---HHhccCCCCCcc--hhhhhhccccHHHHHHH
Confidence 11111 12222 223566 66766666665544333
|
|
| >COG3817 Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.28 E-value=8.3 Score=37.67 Aligned_cols=142 Identities=11% Similarity=0.002 Sum_probs=73.6
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHhhccCCCchHHHHHHHHHHHHHHHHHhchhHHHH--HHHHHHHH
Q 008532 407 EKSAWDTLAWFAVLVGMAGQLTNLGIVTWMSDSVAKCLQSFSLSWPAAFGVLQASYFLIHYLFASQTGHV--GALYSAFL 484 (562)
Q Consensus 407 ~~i~w~~l~l~~~~~~l~~~l~~tGi~~~ia~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~f~S~~a~~--~il~Pi~~ 484 (562)
+.+.|.-++==. .-++|.+....|..|.+++......+..+ .. ..+...++.....+.++.|.=.+ ++..-+..
T Consensus 162 d~v~wa~iLPQ~-LaaLG~vFa~aGvG~~ia~L~~~~i~~Ds--rf-iaV~~Y~vgMalfTmiMGNaFAAFpViTagIgv 237 (313)
T COG3817 162 DQVSWAAILPQM-LAALGAVFASAGVGDVIAHLISEIIPADS--RF-IAVAAYCVGMALFTMIMGNAFAAFPVITAGIGV 237 (313)
T ss_pred HHhhHHHHHHHH-HHHHHHHHHhcchhHHHHHHHHHHcccch--hH-HHHHHHHHHHHHHHHHHcccchhceeeeccccc
Confidence 367787654111 22466778899999999999988765432 22 22222333333344444443211 11222223
Q ss_pred H-HHHHcCCCHHHHHHHHHHHHhhh-hhhccccchhhHHhhcCCC-CCHHHHHHHhHHHHHHHHHHHHHHHH
Q 008532 485 A-MHLAAGVPGVLAALALAYNTNLF-GAITHYSSGQAAVYYGAGY-IDLPDVFKMGFTMALVNAIIWGVTGT 553 (562)
Q Consensus 485 ~-la~~~Gv~p~~~~l~l~~~~~~~-~~~tP~~s~~n~i~~~~g~-i~~~d~~k~g~~~~li~~vi~~~v~~ 553 (562)
| +--++|-||...+ ++++-++.| ..+||...--|.+-...-+ -|-...+|.=.|..++.+++-+...|
T Consensus 238 Pilv~q~ganPaV~~-AigM~sGfCGTLlTPMAANFN~vPAALlel~DknaVIKaQ~ptalvlli~ni~Lmy 308 (313)
T COG3817 238 PILVGQLGANPAVAG-AIGMLSGFCGTLLTPMAANFNIVPAALLELKDKNAVIKAQAPTALVLLIANIFLMY 308 (313)
T ss_pred ceeeeccCCChHHHH-HHHHHhhhhhhccChhhhhcCcchHHHhCCccccceeeeccchhhHHHHHHHHHHH
Confidence 3 2346888887654 233333333 3468887666654332211 12334556656666666655554443
|
|
| >PF06166 DUF979: Protein of unknown function (DUF979); InterPro: IPR009323 This family consists of several putative bacterial membrane proteins | Back alignment and domain information |
|---|
Probab=92.03 E-value=1.6 Score=43.74 Aligned_cols=134 Identities=21% Similarity=0.183 Sum_probs=87.1
Q ss_pred HHHHHHHHHHhCHHHHHHHHHHHHhCC-ChhhHHHHHHHHHHHhhhcCCChhhhhhHhHHHHHHHHHH-HcCCCCCCCCc
Q 008532 180 SFFFARGFVKTGLGDRIATYFVKWLGK-STLGLSYGLTFSEALIAPAMPSTTARAGGVFLPIIKSLSL-SAGSKPGDSSS 257 (562)
Q Consensus 180 ~~~la~al~~tGl~~ria~~i~~~~g~-~~~~l~~~l~l~~~~ls~~~~s~~a~~~~i~~Pi~~~i~~-~~g~~p~~~~~ 257 (562)
+-.++..+.+.|..|-+++.+...... ++..-....++.-++++..+.|..|...++-.-|..++.- +.|.||.
T Consensus 170 LAaLG~vF~~AGVG~vIa~lv~~viP~g~~~~~ViaYclGMalFTmIMGNAFAAF~ViTaGIGiPfvi~~~GgnPa---- 245 (308)
T PF06166_consen 170 LAALGAVFTAAGVGDVIASLVSSVIPEGNRFIGVIAYCLGMALFTMIMGNAFAAFPVITAGIGIPFVIAQFGGNPA---- 245 (308)
T ss_pred HHHHHHHHHhcCccHHHHHHHHhhcCCCCeehhHHHHHHHHHHHHHHHccHHHHhHHHHhccCceEEEecCCCCHH----
Confidence 345678899999999999999988754 7777777888888899999999886432111222222222 2366652
Q ss_pred chhhhHHHHHhHHhhhh-hcccccccchhHHHHHHHHHHcCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008532 258 KKLGSYLIQSQFQSAGN-SSALFLTAAAQNLLCLKLAEELGVIISSPWVSWFKAACVPALVALLATPLILYKL 329 (562)
Q Consensus 258 ~~~~~~l~l~~~~~~~~-~g~~t~~g~~~n~i~~g~~~~~G~~i~~~~~~w~~~~~~~~li~~~~~~~~~~~~ 329 (562)
.+-++.+.++. |..+||.+..-|++=..++|-.+. . .-.|.-.|.+++.+++...++|++
T Consensus 246 ------ivgAlgM~aGyCGTLmTPMAANFNiVPaALLElkDk-~-----gVIKaQ~p~Al~llvv~I~LMy~l 306 (308)
T PF06166_consen 246 ------IVGALGMTAGYCGTLMTPMAANFNIVPAALLELKDK-Y-----GVIKAQAPTALVLLVVNIVLMYFL 306 (308)
T ss_pred ------HHHHHHHhhcchhcccChhhhhcCcchHHHhcCCcc-c-----cchhhhhHHHHHHHHHHHHHHHHH
Confidence 22222222222 456789888889988888764221 0 123566788888888888777764
|
The function of this family is unclear. |
| >PRK10420 L-lactate permease; Provisional | Back alignment and domain information |
|---|
Probab=91.84 E-value=13 Score=41.28 Aligned_cols=136 Identities=15% Similarity=0.083 Sum_probs=85.5
Q ss_pred cchHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhhhcCCChhhhhhHhHHHHHHHHHHHcC
Q 008532 170 TNEVIWLIVISFFFARGFVKTGLGDRIATYFVKWLGKSTLGLSYGLTFSEALIAPAMPSTTARAGGVFLPIIKSLSLSAG 249 (562)
Q Consensus 170 ~~~~i~li~~~~~la~al~~tGl~~ria~~i~~~~g~~~~~l~~~l~l~~~~ls~~~~s~~a~~~~i~~Pi~~~i~~~~g 249 (562)
.++..+.+...+.++..++.+|...-++..+. ..|+-+..+.-.+-.++ +++.+|++.-- +++.++=.+.+++.|
T Consensus 405 ~~~~~iti~~~vala~vm~~SGm~~~la~~~A-~~G~~yp~~aP~lG~lG---~FvTGS~TsSN-~LF~~lQ~~tA~~lg 479 (551)
T PRK10420 405 LALPIYSIGMVLAFAFISNYSGLSSTLALALA-HTGHAFTFFSPFLGWLG---VFLTGSDTSSN-ALFAALQATAAQQIG 479 (551)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccHHHHHHHHH-HhCccHHHHHHHHHhhh---cccccccHHHH-HHHHHHHHHHHHHcC
Confidence 35677888888999999999999999999777 46665444443333333 34445665443 588888889999999
Q ss_pred CCCCCCCcchhhhHHHHHhHHhhhhhcccccccchhHHHHHHHHHH-cCCcccccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008532 250 SKPGDSSSKKLGSYLIQSQFQSAGNSSALFLTAAAQNLLCLKLAEE-LGVIISSPWVSWFKAACVPALVALLATPLILYK 328 (562)
Q Consensus 250 ~~p~~~~~~~~~~~l~l~~~~~~~~~g~~t~~g~~~n~i~~g~~~~-~G~~i~~~~~~w~~~~~~~~li~~~~~~~~~~~ 328 (562)
.+|. .+.-....+++.|.+. +++|+......-. .|. =++.++..++++++..++..++.+.
T Consensus 480 l~~~---------li~Aaq~~Gg~~GkmI----spq~I~~a~a~vg~~G~-----Eg~ilr~t~~~~l~~~~~~gi~~~~ 541 (551)
T PRK10420 480 VSDV---------LLVAANTTGGVTGKMI----SPQSIAIACAAVGLVGK-----ESDLFRFTVKHSLIFTCMVGVITTL 541 (551)
T ss_pred CCHH---------HHHHHHHHhhHHhhcc----CHHHHHHHHHHHccCCc-----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9762 2222223333333333 4578766543322 332 4577777777777766665555443
|
|
| >TIGR00795 lctP L-lactate transport | Back alignment and domain information |
|---|
Probab=91.73 E-value=12 Score=41.45 Aligned_cols=135 Identities=14% Similarity=0.056 Sum_probs=87.0
Q ss_pred chHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhhhcCCChhhhhhHhHHHHHHHHHHHcCC
Q 008532 171 NEVIWLIVISFFFARGFVKTGLGDRIATYFVKWLGKSTLGLSYGLTFSEALIAPAMPSTTARAGGVFLPIIKSLSLSAGS 250 (562)
Q Consensus 171 ~~~i~li~~~~~la~al~~tGl~~ria~~i~~~~g~~~~~l~~~l~l~~~~ls~~~~s~~a~~~~i~~Pi~~~i~~~~g~ 250 (562)
++..+.....+.+++.++.+|..+-+++.+.+ .|+-+..+.-.+-.++ +++.+|++.-- .++.++=.+.+++.|.
T Consensus 392 ~~~~lt~~~~~~~a~vm~~sGm~~~la~~~A~-~G~~yp~~aP~iG~lG---~FiTGS~TsSN-~LFg~lQ~~tA~~lGl 466 (530)
T TIGR00795 392 RLPILTIGMVLAFANVSNYSGMSKTLALALAH-TGLAFTFFSPFLGWLG---VFLTGSDTSSN-LLFGSLQLLTAEQIGL 466 (530)
T ss_pred HHHHHHHHHHHHHHHHhccccHHHHHHHHHHH-hCCchHHHHHHHHhhh---cccccchHHHH-HHHHHHHHHHHHHcCC
Confidence 45566666677788999999999999999998 7775544444443333 34445665443 5788888899999998
Q ss_pred CCCCCCcchhhhHHHHHhHHhhhhhcccccccchhHHHHHHHHHH-cCCcccccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008532 251 KPGDSSSKKLGSYLIQSQFQSAGNSSALFLTAAAQNLLCLKLAEE-LGVIISSPWVSWFKAACVPALVALLATPLILYK 328 (562)
Q Consensus 251 ~p~~~~~~~~~~~l~l~~~~~~~~~g~~t~~g~~~n~i~~g~~~~-~G~~i~~~~~~w~~~~~~~~li~~~~~~~~~~~ 328 (562)
+|. .+.-....+++.|.+. +++|+......-. .| . =++.++..++++++..++..++.+.
T Consensus 467 ~~~---------li~A~q~~Gg~~G~mI----sp~~I~~a~a~vg~~G---~--Eg~ilr~t~~~~l~~~i~~gv~~~~ 527 (530)
T TIGR00795 467 PET---------LLLAANTVGGVMGKMI----SPQSIAIACAAVGLVG---Q--ESDLFRKTVKYSLIYAIIVGVVALL 527 (530)
T ss_pred CHH---------HHHHHHHHhHHHhhcc----CHHHHHHHHHHHccCC---c--hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 762 2222233344444433 3577766543322 33 2 4578888888888877776666554
|
The only characterized member of this family, from E. coli, appears to catalyze lactate:H+ uptake. Members of this family have 12 probable TMS. |
| >COG1620 LldP L-lactate permease [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=91.63 E-value=12 Score=40.76 Aligned_cols=146 Identities=18% Similarity=0.175 Sum_probs=93.8
Q ss_pred CCChHHHHHhc------cchHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhhhcCCChhhh
Q 008532 159 TLAFPTAFAAF------TNEVIWLIVISFFFARGFVKTGLGDRIATYFVKWLGKSTLGLSYGLTFSEALIAPAMPSTTAR 232 (562)
Q Consensus 159 v~~~~~~~~~~------~~~~i~li~~~~~la~al~~tGl~~ria~~i~~~~g~~~~~l~~~l~l~~~~ls~~~~s~~a~ 232 (562)
..+++|..+.+ .+...+.+...+.+++.+..+|..+-+++.+.+. |+......-.+-..+.++ .+|++..
T Consensus 361 ~~~~~~~~~~~~~t~k~~~~p~lti~~~l~~~~l~~~SG~~~tla~~~A~~-G~~fp~fSp~lGwiG~Fl---tGS~T~s 436 (522)
T COG1620 361 KIKPKDAVTAFKETLKELKLPILTIIFALAMAYLMNYSGLSKTLALALAHT-GEAFPLFSPFLGWIGVFL---TGSNTSS 436 (522)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHhc-CCCchhHhHHHHHHhhhh---cccchHH
Confidence 57777765433 4567788888999999999999999999888877 766555555444444444 4566544
Q ss_pred hhHhHHHHHHHHHHHcCCCCCCCCcchhhhHHHHHhHHhhhhhcccccccchhHHHHHHHHHH-cCCcccccHHHHHHHH
Q 008532 233 AGGVFLPIIKSLSLSAGSKPGDSSSKKLGSYLIQSQFQSAGNSSALFLTAAAQNLLCLKLAEE-LGVIISSPWVSWFKAA 311 (562)
Q Consensus 233 ~~~i~~Pi~~~i~~~~g~~p~~~~~~~~~~~l~l~~~~~~~~~g~~t~~g~~~n~i~~g~~~~-~G~~i~~~~~~w~~~~ 311 (562)
- ..+-|+=...+++.|.++. ++.+ +.+.||.+-=.=+++|+.+...... .|. =+|-+|..
T Consensus 437 N-~lFg~lQ~~~A~~iG~s~~----------l~~A---antvGg~~gkMIspqsIa~acaavg~~gk-----Eg~l~r~t 497 (522)
T COG1620 437 N-LLFGPLQQTTAEQIGLSPV----------LLVA---ANTVGGVMGKMISPQSIAAACAAVGLVGK-----EGDLLRKT 497 (522)
T ss_pred H-HHHHHHHHHHHHHcCCCHH----------HHHH---HHhhhhhhccccCHHHHHHHHHHhccccc-----hhHHHHHH
Confidence 3 4778888899999999762 3322 2222332222224677766543322 332 45777888
Q ss_pred HHHHHHHHHHHHHHHH
Q 008532 312 CVPALVALLATPLILY 327 (562)
Q Consensus 312 ~~~~li~~~~~~~~~~ 327 (562)
.++++....+..++.+
T Consensus 498 v~~sl~~~~~~~i~~~ 513 (522)
T COG1620 498 VKPSLIYLIIAGVITL 513 (522)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888777666665544
|
|
| >PRK09695 glycolate transporter; Provisional | Back alignment and domain information |
|---|
Probab=91.03 E-value=15 Score=40.79 Aligned_cols=134 Identities=14% Similarity=0.056 Sum_probs=84.3
Q ss_pred chHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhhhcCCChhhhhhHhHHHHHHHHHHHcCC
Q 008532 171 NEVIWLIVISFFFARGFVKTGLGDRIATYFVKWLGKSTLGLSYGLTFSEALIAPAMPSTTARAGGVFLPIIKSLSLSAGS 250 (562)
Q Consensus 171 ~~~i~li~~~~~la~al~~tGl~~ria~~i~~~~g~~~~~l~~~l~l~~~~ls~~~~s~~a~~~~i~~Pi~~~i~~~~g~ 250 (562)
+...+.+...+.++..++.+|...-+++.+. ..|+-+..+.-.+-.++ +++.+|++.-- .++.++=...+++.|.
T Consensus 414 ~~~~lti~~~vala~vm~~SGm~~~La~~~a-~~G~~yp~~aP~iG~lG---~FvTGS~TsSN-~LF~~lQ~~tA~~lGl 488 (560)
T PRK09695 414 KWPILSIGMVLAFAFVTNYSGMSTTLALVLA-GTGVMFPFFSPFLGWLG---VFLTGSDTSSN-ALFGSLQSTTAQQINV 488 (560)
T ss_pred HHHHHHHHHHHHHHHHHhccchHHHHHHHHH-HhCccHHHHHHHHhhhh---cccccccHHHH-HHHHHHHHHHHHHcCC
Confidence 5567788888899999999999999999995 56664443333333333 34445665443 5788888899999998
Q ss_pred CCCCCCcchhhhHHHHHhHHhhhhhcccccccchhHHHHHHHHHH-cCCcccccHHHHHHHHHHHHHHHHHHHHHHHH
Q 008532 251 KPGDSSSKKLGSYLIQSQFQSAGNSSALFLTAAAQNLLCLKLAEE-LGVIISSPWVSWFKAACVPALVALLATPLILY 327 (562)
Q Consensus 251 ~p~~~~~~~~~~~l~l~~~~~~~~~g~~t~~g~~~n~i~~g~~~~-~G~~i~~~~~~w~~~~~~~~li~~~~~~~~~~ 327 (562)
+|. .+.-....++..|.+. +++|+......-. .|. =++.++..++++++..++...+.+
T Consensus 489 ~~~---------li~Aaq~~Gg~~GkmI----spq~I~~a~a~vgl~G~-----Eg~ilr~t~~~~l~~~~i~gi~~~ 548 (560)
T PRK09695 489 SDT---------LLVAANTSGGVTGKMI----SPQSIAVACAATGMVGR-----ESELFRYTVKHSLIFASVIGIITL 548 (560)
T ss_pred CHH---------HHHHHHHHhhHHhhcc----CHHHHHHHHHHHccCCc-----hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 762 2222223333333333 4578766543322 332 357777777777776666555544
|
|
| >COG4666 TRAP-type uncharacterized transport system, fused permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.96 E-value=11 Score=41.75 Aligned_cols=128 Identities=16% Similarity=0.011 Sum_probs=79.9
Q ss_pred HHHHHHHHHHhCHHHHHHHHHHHhhccCCCchHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHcCCCHHHHHH
Q 008532 420 LVGMAGQLTNLGIVTWMSDSVAKCLQSFSLSWPAAFGVLQASYFLIHYLFASQTGHVGALYSAFLAMHLAAGVPGVLAAL 499 (562)
Q Consensus 420 ~~~l~~~l~~tGi~~~ia~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~f~S~~a~~~il~Pi~~~la~~~Gv~p~~~~l 499 (562)
.+-++..++++|+.|++-|......+....++...-++-.. +..+.-.|..+-++..--..+|+.+..|.+|...+-
T Consensus 195 FilFga~l~~~G~g~~fid~a~a~~G~~~GGpak~aVv~Sg---l~G~isGSsvAN~vttG~fTIPlMkR~Gy~~~~AgA 271 (642)
T COG4666 195 FILFGAFLVKSGAGQFFIDLAFALAGLRRGGPAKVAVVSSG---LMGMISGSSVANTVTTGSFTIPLMKRAGYPPEFAGA 271 (642)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCCCcceeeecc---hhheecchhhhhhhhcceeeHHHHHhcCCChhcccc
Confidence 45567789999999999998888777654333322221111 111111233333333344567788889999986654
Q ss_pred HHHHHHhhhhhhccccchhhHH-hhcCCCCCHHHHHHHhHHHHHHHHHHHHHH
Q 008532 500 ALAYNTNLFGAITHYSSGQAAV-YYGAGYIDLPDVFKMGFTMALVNAIIWGVT 551 (562)
Q Consensus 500 ~l~~~~~~~~~~tP~~s~~n~i-~~~~g~i~~~d~~k~g~~~~li~~vi~~~v 551 (562)
.=+-++ .++-+.|+--+..+. ....-++++.|.++.++..+++...-+...
T Consensus 272 vEaaAS-~GGQimPPiMGAAAFiMae~~gipY~~ii~aA~iPAllyy~~v~~~ 323 (642)
T COG4666 272 VEAAAS-TGGQLMPPVMGAAAFIMAEYLGIPYTEIILAAFIPALLYYFGVILM 323 (642)
T ss_pred eehhhh-cCCchhhhhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 444443 366666654444443 334567899999999999999888765443
|
|
| >COG3493 CitS Na+/citrate symporter [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=86.96 E-value=42 Score=35.02 Aligned_cols=62 Identities=10% Similarity=0.165 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHhhcCCCh--------HHHHHHHHHHHHHhcCCChHHH--HHhc--cchHHHHHHHHHHHHHH
Q 008532 125 LLSIFLSTIAGLVLSPLPV--------GAWAFLGLTTSIVTRTLAFPTA--FAAF--TNEVIWLIVISFFFARG 186 (562)
Q Consensus 125 ~l~i~~~~i~lw~~~~~p~--------~~~all~~~ll~l~gv~~~~~~--~~~~--~~~~i~li~~~~~la~a 186 (562)
.+..++..+..|+-+++|. .+.++++...++..+.+|.++. .+.| .++-.-++++..+.+..
T Consensus 52 avm~vlG~llg~IG~riPI~nk~iGG~aIl~~fvaa~~v~~~llp~~~i~avt~fm~~snFL~fyIA~LI~GSI 125 (438)
T COG3493 52 AVMFVLGALLGEIGKRIPIVNKYIGGGAILALFVAAYLVFYNLLPSNVIKAVTNFMGKSNFLDFYIAALIVGSI 125 (438)
T ss_pred HHHHHHHHHHHHhcccCcchhhccCCchHHHHHHHHHHHHhccCCHHHHHHHHHHhcCCChHHHHHHHHHHhhh
Confidence 3333566777888888774 4778888888999999987643 2333 22445556666665553
|
|
| >PF02667 SCFA_trans: Short chain fatty acid transporter; InterPro: IPR006160 Members of this family may be short chain fatty acid transporters although there has been no experimental characterisation of this function | Back alignment and domain information |
|---|
Probab=85.38 E-value=58 Score=35.09 Aligned_cols=119 Identities=17% Similarity=0.129 Sum_probs=76.7
Q ss_pred HHHHHhC-----HHHHHHHHHHHHhCCChhhHHHHHHHHHHHhhhcCCChhhhhhHhHHHHHHHHHHHcCCCCCCCCcch
Q 008532 185 RGFVKTG-----LGDRIATYFVKWLGKSTLGLSYGLTFSEALIAPAMPSTTARAGGVFLPIIKSLSLSAGSKPGDSSSKK 259 (562)
Q Consensus 185 ~al~~tG-----l~~ria~~i~~~~g~~~~~l~~~l~l~~~~ls~~~~s~~a~~~~i~~Pi~~~i~~~~g~~p~~~~~~~ 259 (562)
..+..+| +.+.+++++.+.. ++....+..++.+.++..|+||....= ++=.|++.+-++++|.|+.
T Consensus 326 Gmm~~sgl~g~sLa~~is~~fvsia--t~~TfP~~~flsagivn~FVPSGGGqW-aVqgP~~~~Aa~~Lgv~~~------ 396 (453)
T PF02667_consen 326 GMMTGSGLGGVSLAQVISNFFVSIA--TPTTFPLFTFLSAGIVNFFVPSGGGQW-AVQGPIVMPAAQALGVDLG------ 396 (453)
T ss_pred HHHhhcCCCcchHHHHHHHHHHHhc--CCccHHHHHHHHHHHheeEecCCCceE-EEecchHHHHHHHhCCCHH------
Confidence 3444555 6779999998875 344567777888899999999999875 4778999999999998763
Q ss_pred hhhHHHHHhHHhhhhhcccccccchhHHHHHHHHHHcCCcccccHHHHHHHHHHHHHHHHHHHHHH
Q 008532 260 LGSYLIQSQFQSAGNSSALFLTAAAQNLLCLKLAEELGVIISSPWVSWFKAACVPALVALLATPLI 325 (562)
Q Consensus 260 ~~~~l~l~~~~~~~~~g~~t~~g~~~n~i~~g~~~~~G~~i~~~~~~w~~~~~~~~li~~~~~~~~ 325 (562)
...++.+++-....+.-|. .+.-.+.-.| ++ ..|-+-+.+...++..++....
T Consensus 397 ---~~~ma~a~Gda~tNmiQPF------WaLPlL~I~G--L~--aRDImGy~~~~ll~~~~i~~~~ 449 (453)
T PF02667_consen 397 ---KTVMAYAWGDAWTNMIQPF------WALPLLGIAG--LK--ARDIMGYCVVILLVSGIIVSLG 449 (453)
T ss_pred ---HHHHHHHHHHHHHHHHHHH------HHHHHHHHcC--Cc--HHHHHHHHHHHHHHHHHHHHHH
Confidence 1334444444333332221 1222222245 55 7788888877666555544433
|
|
| >PF07399 DUF1504: Protein of unknown function (DUF1504); InterPro: IPR009978 This family consists of several hypothetical bacterial proteins of around 440 residues in length | Back alignment and domain information |
|---|
Probab=85.25 E-value=3.8 Score=42.96 Aligned_cols=147 Identities=21% Similarity=0.226 Sum_probs=85.6
Q ss_pred HHHHHHHHHHhcCCChHHHHHhccchHHH--HHHHHHHHHHHHHHhCHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhhh
Q 008532 147 AFLGLTTSIVTRTLAFPTAFAAFTNEVIW--LIVISFFFARGFVKTGLGDRIATYFVKWLGKSTLGLSYGLTFSEALIAP 224 (562)
Q Consensus 147 all~~~ll~l~gv~~~~~~~~~~~~~~i~--li~~~~~la~al~~tGl~~ria~~i~~~~g~~~~~l~~~l~l~~~~ls~ 224 (562)
.+++...+...|. .++...+.++..+ =++-+|.++.-..-=|+=+|--+-+++.. ++. .++..+..++.
T Consensus 286 iF~G~lfLfFLGf---~~ay~~yQ~~l~Lre~lLVgFFLaGLVvlGglQ~WWlqpll~~m--~~~----~lf~ga~~LTa 356 (438)
T PF07399_consen 286 IFMGALFLFFLGF---TQAYKRYQSPLILREALLVGFFLAGLVVLGGLQQWWLQPLLSGM--SPL----ALFFGATALTA 356 (438)
T ss_pred HHHHHHHHHHHHH---HHHHHhhccchhhhHHHHHHHHHhhHHHcCchHHHHHHHHHhcC--Chh----HHHHHHHHHHH
Confidence 3444233444443 4555656555443 12334555555555566666444444332 333 45666778888
Q ss_pred cCCChhhhhhHhHHHHHHHHHHHcCCCCCCCCcchhhhHHHHHhHHhhhhhcccccccchhHHHHHHHHHH--cCCcccc
Q 008532 225 AMPSTTARAGGVFLPIIKSLSLSAGSKPGDSSSKKLGSYLIQSQFQSAGNSSALFLTAAAQNLLCLKLAEE--LGVIISS 302 (562)
Q Consensus 225 ~~~s~~a~~~~i~~Pi~~~i~~~~g~~p~~~~~~~~~~~l~l~~~~~~~~~g~~t~~g~~~n~i~~g~~~~--~G~~i~~ 302 (562)
+.+|..-+ -+...+- |.++ .. ++. +..++..||..|.+++.||+.-...+++ .+..++
T Consensus 357 ~tDNAalT---YLgslv~------g~sd----~~---kYa---lVAGAVtGGGLTVIANAPNpaG~aiLr~~F~d~~Is- 416 (438)
T PF07399_consen 357 FTDNAALT---YLGSLVP------GLSD----AF---KYA---LVAGAVTGGGLTVIANAPNPAGQAILRKHFPDGSIS- 416 (438)
T ss_pred HhhhHHHH---HHHHhcc------CCCH----HH---HHH---HHhheeccCceeEeccCCChhhHHHHhccCCCCCcC-
Confidence 88886532 1222221 2211 12 233 2345666788999999999999988876 223588
Q ss_pred cHHHHHHHHHHHHHHHHHHHH
Q 008532 303 PWVSWFKAACVPALVALLATP 323 (562)
Q Consensus 303 ~~~~w~~~~~~~~li~~~~~~ 323 (562)
-...+..+++|+++.....+
T Consensus 417 -~~~L~l~AL~PT~ia~~~F~ 436 (438)
T PF07399_consen 417 -PLGLFLAALPPTLIAALAFW 436 (438)
T ss_pred -hHHHHHHHHhHHHHHHHHHH
Confidence 77888899999988776554
|
The function of this family is unknown. |
| >PF13726 Na_H_antiport_2: Na+-H+ antiporter family | Back alignment and domain information |
|---|
Probab=84.95 E-value=12 Score=30.49 Aligned_cols=64 Identities=22% Similarity=0.221 Sum_probs=46.4
Q ss_pred CChHHHHHHHHHHHHHhcCCChHHHHHhc------cchHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHh
Q 008532 141 LPVGAWAFLGLTTSIVTRTLAFPTAFAAF------TNEVIWLIVISFFFARGFVKTGLGDRIATYFVKWL 204 (562)
Q Consensus 141 ~p~~~~all~~~ll~l~gv~~~~~~~~~~------~~~~i~li~~~~~la~al~~tGl~~ria~~i~~~~ 204 (562)
+|.-..-+++...-.+.+.++.+|..+.| ..++-.-.+..=.++.++.|||+.+.+++++.++.
T Consensus 18 ~nVvlalliaalvgGl~~Gl~l~~t~~~~~~Gmgg~a~~ALSY~lLGafA~aIs~sGl~~~L~~~i~~~~ 87 (88)
T PF13726_consen 18 VNVVLALLIAALVGGLVGGLGLGETMSAFIDGMGGNAETALSYILLGAFAVAISKSGLTDILAKKIIKKL 87 (88)
T ss_pred hhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHc
Confidence 56555555555555667778877765544 23566666677778999999999999999998875
|
|
| >PF07854 DUF1646: Protein of unknown function (DUF1646); InterPro: IPR012443 Some of the members of this family are hypothetical bacterial and archaeal proteins, but others are annotated as being cation transporters expressed by the archaeon Methanosarcina mazei (Methanosarcina frisia) (Q8PXG5 from SWISSPROT, Q8PXG7 from SWISSPROT and Q8PXG8 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=84.20 E-value=1 Score=45.49 Aligned_cols=44 Identities=16% Similarity=0.301 Sum_probs=34.7
Q ss_pred cccccccchhHHHHHHHHHHcCCcccccHHHHHHHHHHHHHHHHHHHHHHH
Q 008532 276 SALFLTAAAQNLLCLKLAEELGVIISSPWVSWFKAACVPALVALLATPLIL 326 (562)
Q Consensus 276 g~~t~~g~~~n~i~~g~~~~~G~~i~~~~~~w~~~~~~~~li~~~~~~~~~ 326 (562)
|.+...|+-||++.+|- .+++ ..||.+.|.|.+++.+.++..+.
T Consensus 301 GGMlIPGNIPNIIsAgk-----L~I~--skEWar~gvPlGl~~m~~yfi~~ 344 (347)
T PF07854_consen 301 GGMLIPGNIPNIISAGK-----LKIT--SKEWARLGVPLGLVLMVVYFIIL 344 (347)
T ss_pred CCeecCCCcchhhcccc-----Cccc--hHHHHHHcccHHHHHHHHHHHHh
Confidence 44567799999999764 3478 99999999999988777766554
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 562 | |||
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 9e-07 |
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 51.0 bits (121), Expect = 9e-07
Identities = 80/456 (17%), Positives = 133/456 (29%), Gaps = 166/456 (36%)
Query: 205 GKSTLGLSYGLTFSEALIAPAMPSTTARAGGVFLPIIKSLSLSAGSKPGD--SSSKKLGS 262
GK+ + L + M +F L+L + P +KL
Sbjct: 162 GKTWVALD---VCLSYKVQCKMD------FKIFW-----LNLKNCNSPETVLEMLQKLLY 207
Query: 263 YLIQSQFQSAGNSSALFLT-----AAAQNLLCLK-LAEELGVI--ISSPWVSW--FKAAC 312
+ + + +SS + L A + LL K L V+ + + W F +C
Sbjct: 208 QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKA-WNAFNLSC 266
Query: 313 VPALV----------------------------------ALLATPL--ILYKLYPPEVKD 336
L+ +LL L L P EV
Sbjct: 267 -KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL-PREVLT 324
Query: 337 T-PDAPAMAAKKLKQLGPVTRNEWIMVG----TMLLAVS---------------LWIFGD 376
T P ++ A+ ++ G T + W V T ++ S L +F
Sbjct: 325 TNPRRLSIIAESIRD-GLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPP 383
Query: 377 ALGIPSVVAAMIGLSILLLLGVLDWDD----------------CLSEKSAWD-TLAWFAV 419
+ IP+++ LS++ W D L EK + T++ ++
Sbjct: 384 SAHIPTIL-----LSLI-------WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSI 431
Query: 420 LVGMAGQLTNLG-----IVTWMSDSVAKCLQSFSLSWPAAFGVLQASYF---LIHYLFAS 471
+ + +L N IV ++ K S L P YF + H+L
Sbjct: 432 YLELKVKLENEYALHRSIVD--HYNIPKTFDSDDLIPPYLDQ-----YFYSHIGHHLKNI 484
Query: 472 QTGHVGALYS------AFLAMHL-AAGVPGVLAALALAYNTNLFGAITHYSSGQAAVYYG 524
+ L+ FL + A A N + Y
Sbjct: 485 EHPERMTLFRMVFLDFRFLEQKIRHDS----TAWNASGSILNTLQQLKFYKP-------- 532
Query: 525 AGYI-DLPDVFKMGFTMALVNAIIWGVTGTFWWKFL 559
YI D ++ LVNAI+ FL
Sbjct: 533 --YICDNDPKYER-----LVNAIL---------DFL 552
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 562 | |||
| 4f35_D | 449 | Transporter, NADC family; transport protein; HET: | 100.0 | |
| 4f35_D | 449 | Transporter, NADC family; transport protein; HET: | 99.85 |
| >4f35_D Transporter, NADC family; transport protein; HET: BNG CIT; 3.20A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-57 Score=483.16 Aligned_cols=416 Identities=17% Similarity=0.258 Sum_probs=355.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhcCCChHHHHHhccchHHHHHHHHHHHHHHHHHhCHHHHH
Q 008532 117 EVSPQAWQLLSIFLSTIAGLVLSPLPVGAWAFLGLTTSIVTRTLAFPTAFAAFTNEVIWLIVISFFFARGFVKTGLGDRI 196 (562)
Q Consensus 117 ~ls~~~~~~l~i~~~~i~lw~~~~~p~~~~all~~~ll~l~gv~~~~~~~~~~~~~~i~li~~~~~la~al~~tGl~~ri 196 (562)
+.++++++.++++++++++|++|++|..++|+++++++.++|++++||++++|+++++++++++++++.+++|||++||+
T Consensus 27 p~~~~~~~~lai~~~~~~lw~te~iP~~vtall~~~l~~l~gv~~~~~a~~~~~~~~i~li~g~~~la~al~~tGl~~ri 106 (449)
T 4f35_D 27 PFEHNVVLGISMLAFIAVLWLTEALHVTVTAILVPVMAVFFGIFETQAALNNFANSIIFLFLGGFALAAAMHHQGLDKVI 106 (449)
T ss_dssp CSTTHHHHHHHHHHHHHHHHTTTSSCSHHHHHHHHHHHHHTTSSCHHHHHTTTTCHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHCCCCHHHHHHHccCHHHHHHHHHHHHHHHHHHHCHHHHH
Confidence 35688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCChhhHHHHHHHHHHHhhhcCCChhhhhhHhHHHHHHHHHHHcCCCCCCCCcchhhhHHHHHhHHhhhhhc
Q 008532 197 ATYFVKWLGKSTLGLSYGLTFSEALIAPAMPSTTARAGGVFLPIIKSLSLSAGSKPGDSSSKKLGSYLIQSQFQSAGNSS 276 (562)
Q Consensus 197 a~~i~~~~g~~~~~l~~~l~l~~~~ls~~~~s~~a~~~~i~~Pi~~~i~~~~g~~p~~~~~~~~~~~l~l~~~~~~~~~g 276 (562)
|++++++.|++++++.+++++++.++|.+++|+++ + +++.|++.+++++.+.+|+ ++..+.+++++++++++||
T Consensus 107 A~~il~~~g~~~~~l~~~~~~~~~~lS~~isn~a~-~-~~~~Pi~~~i~~~~~~~~~----~~~~~~lll~~~~aa~igg 180 (449)
T 4f35_D 107 ADKVLAMAQGKMSVAVFMLFGVTALLSMWISNTAT-A-AMMLPLVLGVLSKVDADKQ----RSTYVFVLLGVAYSASIGG 180 (449)
T ss_dssp HHHHHHTTCSCTHHHHHHHHHHHHHHHHHSCSHHH-H-HHHHHHHHHHSCSCCCSSC----CSSTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHHhcchHH-H-HHhchHHHHHHHHHhhccc----hhHHHHHHHHHHHHHhhhh
Confidence 99999999999999999999999999999988764 4 6999999999999988775 4455678899999999999
Q ss_pred ccccccchhHHHHHHHHHHcCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCChhHHHHHHhhhcCCCCH
Q 008532 277 ALFLTAAAQNLLCLKLAEELGVIISSPWVSWFKAACVPALVALLATPLILYKLYPPEVKDTPDAPAMAAKKLKQLGPVTR 356 (562)
Q Consensus 277 ~~t~~g~~~n~i~~g~~~~~G~~i~~~~~~w~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~ 356 (562)
+.+++|+++|.+..+. .+++ |.||+..+.|++++.+++.+.+.++++|++.++..+ +.++..+.++
T Consensus 181 ~~t~ig~~~N~i~~~~-----~~~~--f~~~~~~~~p~~li~l~~~~~~l~~~~~~~~~~~~~-------~~~~~~~~~~ 246 (449)
T 4f35_D 181 IATLVGSPPNAIAAAE-----VGLS--FTDWMKFGLPTAMMMLPMAIAILYFLLKPTLNGMFE-------LDRAPVNWDK 246 (449)
T ss_dssp SSSSSSSHHHHHHHHH-----HTCC--HHHHHHHHHHHHHHHHHHHHHHHHTTC---------------------CCCCC
T ss_pred hcccCcCCCccccccc-----cccc--HHHhhhhcCchHHHHHHHHHHHHHHHhcccccccch-------hhccchhhhH
Confidence 9999999999986542 2478 999999999999999999999999999987654322 2234456677
Q ss_pred HHHHHHHHHHHHHHHHHhcC-----CCC--CChHHHHHHHHHHHHHhCCcChHHHhhccCChhHHHHHHHHHHHHHHHHH
Q 008532 357 NEWIMVGTMLLAVSLWIFGD-----ALG--IPSVVAAMIGLSILLLLGVLDWDDCLSEKSAWDTLAWFAVLVGMAGQLTN 429 (562)
Q Consensus 357 ~e~~~l~i~~~~i~l~i~~~-----~~g--i~~~~vall~~~ll~~~gvl~~~~~~~~~i~w~~l~l~~~~~~l~~~l~~ 429 (562)
+|+.....+..++.+|++.. .++ .+.+.+++.++.++...|+++|||+. |++||+++++++|++++++++++
T Consensus 247 ~~~~~~~~~~l~i~l~~~~~~l~~~~~~~~~~~~~val~~~~ll~~~~~l~~~~~~-~~i~W~~l~~~~g~~~l~~~l~~ 325 (449)
T 4f35_D 247 GKVVTLGIFGLTVFLWIFSSPINAALGGFKSFDTLVALGAILMLSFARVVHWKEIQ-KTADWGVLLLFGGGLCLSNVLKQ 325 (449)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHTTSSCHHHHH-HHSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcccccccccccchhHHHHHHHHHHhhhhhccchhhhh-cccCchHHHHhhhHHHHhHHHHh
Confidence 88888888888888887543 233 33467778888888889999999985 58999999999999999999999
Q ss_pred hCHHHHHHHHHHHhhccCCCchHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhhh
Q 008532 430 LGIVTWMSDSVAKCLQSFSLSWPAAFGVLQASYFLIHYLFASQTGHVGALYSAFLAMHLAAGVPGVLAALALAYNTNLFG 509 (562)
Q Consensus 430 tGi~~~ia~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~f~S~~a~~~il~Pi~~~la~~~Gv~p~~~~l~l~~~~~~~~ 509 (562)
+|+.+|+++.+.+..++.+. . .....+......+++|.||++++.++.|++.+++++.|+||..+.++.+++++ ++
T Consensus 326 sG~~~~la~~l~~~~~~~~~--~-~~~~~~~~~~~~ls~f~sn~a~~~~l~Pi~~~~a~~~g~~p~~~~~~~~~~~s-~~ 401 (449)
T 4f35_D 326 TGTSVFLANALSDMVSHMGI--F-VVILVVATFVVFLTEFASNTASAALLIPVFATVAEAFGMSPVLLSVLIAVAAS-CA 401 (449)
T ss_dssp HTHHHHHHHHHHHHHHTTCS--H-HHHHHHHHTTSEETEECCHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHH-CC
T ss_pred cCCHHHHHHHHhhhcccchH--H-HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH-HH
Confidence 99999999999987776542 2 22222222223456799999999999999999999999999999999999887 78
Q ss_pred hhccccchhhHHhhcCCCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 008532 510 AITHYSSGQAAVYYGAGYIDLPDVFKMGFTMALVNAIIWGVTGTFWWK 557 (562)
Q Consensus 510 ~~tP~~s~~n~i~~~~g~i~~~d~~k~g~~~~li~~vi~~~v~~~~w~ 557 (562)
+++|+++++|++++|.|+++++|++|.|+++++++.++...+.+.|||
T Consensus 402 ~~~p~~t~~n~i~~g~g~~~~~d~~k~G~~~~~~~~~v~~~~~~~~Wk 449 (449)
T 4f35_D 402 FMLPVATPPNAIVFASGHIKQSEMMRVGLYLNIACIGLLTAIAMLFWQ 449 (449)
T ss_dssp CSSSSSSHHHHHHCSSGGGGTHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred hHhhhhhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999996
|
| >4f35_D Transporter, NADC family; transport protein; HET: BNG CIT; 3.20A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.6e-21 Score=209.16 Aligned_cols=271 Identities=12% Similarity=0.061 Sum_probs=209.5
Q ss_pred CccCCCCCCCCCCCCCCccccccccccccCcCCCCCccccccccCCCCCCCCCCCCCCCcccchhHHHHHH---------
Q 008532 32 PISKSPPSIFPSHSRSFPTLRSRSLSLSRPHIIRPIHSSSQNDTASTVPPTNLPSPPPPRGAKLLPFVISI--------- 102 (562)
Q Consensus 32 p~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~i~~--------- 102 (562)
||..++.+.++.+|+ ||.+.+++.....++.+.+.+.+++.+||..... +.+.++..|....
T Consensus 147 Pi~~~i~~~~~~~~~---~~~~~~lll~~~~aa~igg~~t~ig~~~N~i~~~------~~~~~f~~~~~~~~p~~li~l~ 217 (449)
T 4f35_D 147 PLVLGVLSKVDADKQ---RSTYVFVLLGVAYSASIGGIATLVGSPPNAIAAA------EVGLSFTDWMKFGLPTAMMMLP 217 (449)
T ss_dssp HHHHHHSCSCCCSSC---CSSTTTTHHHHHHHHHHHHSSSSSSSHHHHHHHH------HHTCCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhhccc---hhHHHHHHHHHHHHHhhhhhcccCcCCCcccccc------cccccHHHhhhhcCchHHHHHH
Confidence 777788888887775 3556677777777777888888999999987422 2455666665332
Q ss_pred HHHHHHHHhcCCCC------------CCCHHHHHHHHHHHHHHHHHhhcC----------CChHHHHHHHHHHHHHhcCC
Q 008532 103 SIGLILRFLVPKPV------------EVSPQAWQLLSIFLSTIAGLVLSP----------LPVGAWAFLGLTTSIVTRTL 160 (562)
Q Consensus 103 ~~~l~~~~~~p~p~------------~ls~~~~~~l~i~~~~i~lw~~~~----------~p~~~~all~~~ll~l~gv~ 160 (562)
...+.+|++++ |+ +.+.+++..+.++..++.+|.+.. .+...+++.+..++..+|.+
T Consensus 218 ~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~l~~~~~~l~~~~~~~~~~~~~val~~~~ll~~~~~l 296 (449)
T 4f35_D 218 MAIAILYFLLK-PTLNGMFELDRAPVNWDKGKVVTLGIFGLTVFLWIFSSPINAALGGFKSFDTLVALGAILMLSFARVV 296 (449)
T ss_dssp HHHHHHHTTC---------------CCCCCTHHHHHHHHHHHHHHHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHhc-ccccccchhhccchhhhHHHHHHHHHHHHHHHHHHhhcccccccccccchhHHHHHHHHHHhhhhhcc
Confidence 22334445555 33 345667788888888888887532 12456788888888899999
Q ss_pred ChHHHHHhccchHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhCC-ChhhHHHHHHHHHHHhhhcCCChhhhhhHhHHH
Q 008532 161 AFPTAFAAFTNEVIWLIVISFFFARGFVKTGLGDRIATYFVKWLGK-STLGLSYGLTFSEALIAPAMPSTTARAGGVFLP 239 (562)
Q Consensus 161 ~~~~~~~~~~~~~i~li~~~~~la~al~~tGl~~ria~~i~~~~g~-~~~~l~~~l~l~~~~ls~~~~s~~a~~~~i~~P 239 (562)
++||+.++.+|++++++.+++.++.+++|+|+.+++++.+.+..++ ++......+.....+++.+.+|++ ++ .++.|
T Consensus 297 ~~~~~~~~i~W~~l~~~~g~~~l~~~l~~sG~~~~la~~l~~~~~~~~~~~~~~~~~~~~~~ls~f~sn~a-~~-~~l~P 374 (449)
T 4f35_D 297 HWKEIQKTADWGVLLLFGGGLCLSNVLKQTGTSVFLANALSDMVSHMGIFVVILVVATFVVFLTEFASNTA-SA-ALLIP 374 (449)
T ss_dssp CHHHHHHHSCHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHTTCSHHHHHHHHHTTSEETEECCHHH-HH-HHHHH
T ss_pred chhhhhcccCchHHHHhhhHHHHhHHHHhcCCHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHhccHHH-HH-HHHHH
Confidence 9999999999999999999999999999999999999999987655 555566666667777888887765 44 59999
Q ss_pred HHHHHHHHcCCCCCCCCcchhhhHHHHHhHHhhhhhcccccccchhHHHHHHHHHHcCCcccccHHHHHHHHHHHHHHHH
Q 008532 240 IIKSLSLSAGSKPGDSSSKKLGSYLIQSQFQSAGNSSALFLTAAAQNLLCLKLAEELGVIISSPWVSWFKAACVPALVAL 319 (562)
Q Consensus 240 i~~~i~~~~g~~p~~~~~~~~~~~l~l~~~~~~~~~g~~t~~g~~~n~i~~g~~~~~G~~i~~~~~~w~~~~~~~~li~~ 319 (562)
++.+++++.|.+| ..+++....+++. +.++|+|+++|.+++|. |+ ++ +.||+|.|+|.+++..
T Consensus 375 i~~~~a~~~g~~p---------~~~~~~~~~~~s~-~~~~p~~t~~n~i~~g~----g~-~~--~~d~~k~G~~~~~~~~ 437 (449)
T 4f35_D 375 VFATVAEAFGMSP---------VLLSVLIAVAASC-AFMLPVATPPNAIVFAS----GH-IK--QSEMMRVGLYLNIACI 437 (449)
T ss_dssp HHHHHHHHTTCCS---------HHHHHHHHHHHHC-CCSSSSSSHHHHHHCSS----GG-GG--THHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCH---------HHHHHHHHHHHHH-HhHhhhhhHHHHHHHhc----CC-CC--HHHHHHHHHHHHHHHH
Confidence 9999999999987 3456666666664 57899999999999874 54 78 9999999999999999
Q ss_pred HHHHHHHHHhcC
Q 008532 320 LATPLILYKLYP 331 (562)
Q Consensus 320 ~~~~~~~~~~~~ 331 (562)
++...+.+.|||
T Consensus 438 ~v~~~~~~~~Wk 449 (449)
T 4f35_D 438 GLLTAIAMLFWQ 449 (449)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHhcC
Confidence 888888888886
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00