Citrus Sinensis ID: 008534
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 562 | 2.2.26 [Sep-21-2011] | |||||||
| Q93YS4 | 751 | ABC transporter G family | yes | no | 0.973 | 0.728 | 0.751 | 0.0 | |
| Q9FT51 | 737 | ABC transporter G family | no | no | 0.932 | 0.710 | 0.669 | 0.0 | |
| Q9LK50 | 685 | ABC transporter G family | no | no | 0.717 | 0.588 | 0.498 | 1e-110 | |
| Q9C6W5 | 648 | ABC transporter G family | no | no | 0.697 | 0.604 | 0.492 | 1e-104 | |
| Q9SZR9 | 638 | ABC transporter G family | no | no | 0.669 | 0.589 | 0.487 | 1e-103 | |
| Q84TH5 | 662 | ABC transporter G family | no | no | 0.697 | 0.592 | 0.450 | 1e-100 | |
| Q7XA72 | 672 | ABC transporter G family | no | no | 0.724 | 0.605 | 0.440 | 5e-96 | |
| Q4GZT4 | 655 | ATP-binding cassette sub- | yes | no | 0.692 | 0.593 | 0.365 | 8e-62 | |
| Q7TMS5 | 657 | ATP-binding cassette sub- | yes | no | 0.656 | 0.561 | 0.375 | 1e-61 | |
| Q80W57 | 657 | ATP-binding cassette sub- | yes | no | 0.692 | 0.592 | 0.349 | 1e-60 |
| >sp|Q93YS4|AB22G_ARATH ABC transporter G family member 22 OS=Arabidopsis thaliana GN=ABCG22 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 829 bits (2142), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 421/560 (75%), Positives = 481/560 (85%), Gaps = 13/560 (2%)
Query: 1 MEKPVSSTSLARTKSDQLVETLSAAFKSP--------VSSETAGASDGGGTLSRKSSRRM 52
MEKP ++ LART+S+QL ET++A +SP V + A GGGTLSRKSSRR+
Sbjct: 3 MEKPPLASGLARTRSEQLYETVAADIRSPHGSMDANGVPATAPAAVGGGGTLSRKSSRRL 62
Query: 53 LTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSGAALSRASSASLGLSFSFTGFTMPP 112
+ SPGR+ SG THIRKSRSAQLKLEL+EVSSGAALSRASSASLGLSFSFTGF MPP
Sbjct: 63 M-GMSPGRS--SGAGTHIRKSRSAQLKLELEEVSSGAALSRASSASLGLSFSFTGFAMPP 119
Query: 113 DEIADSKPFSDDD-IPEDIEAGTRERPKFQTEPTLPIYLKFTDVTYKVILKGMTSSEEKD 171
+EI+DSKPFSDD+ IPEDIEAG +++PKFQ EPTLPI+LKF DVTYKV++K +TSS EK+
Sbjct: 120 EEISDSKPFSDDEMIPEDIEAG-KKKPKFQAEPTLPIFLKFRDVTYKVVIKKLTSSVEKE 178
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKI 231
IL GI+GSVNPGEVLALMGPSGSGKTTLL+LL+GR+ + + GGS+TYND PYSK LKSKI
Sbjct: 179 ILTGISGSVNPGEVLALMGPSGSGKTTLLSLLAGRISQSSTGGSVTYNDKPYSKYLKSKI 238
Query: 232 GFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGS 291
GFVTQDDVLFPHLTVKETLTYAA LRLP TLT++QK++RA+DVI ELGLERCQDTMIGG+
Sbjct: 239 GFVTQDDVLFPHLTVKETLTYAARLRLPKTLTREQKKQRALDVIQELGLERCQDTMIGGA 298
Query: 292 FVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTT 351
FVRGVSGGERKRV IGNEIIINPSLL LDEPTSGLDSTTALR + ML DIAEAGKTV+TT
Sbjct: 299 FVRGVSGGERKRVSIGNEIIINPSLLLLDEPTSGLDSTTALRTILMLHDIAEAGKTVITT 358
Query: 352 IHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIGCSPQIAMNPAEFLLDLANGN 411
IHQPSSRLFH+FDKLILLG+GSLLYFGK+SEA+ YFSSIGCSP IAMNPAEFLLDLANGN
Sbjct: 359 IHQPSSRLFHRFDKLILLGRGSLLYFGKSSEALDYFSSIGCSPLIAMNPAEFLLDLANGN 418
Query: 412 LHDVSVPSELQDRVQTENSENDTANGKPTPAIVHEYLVEAYETRVAENEKKKLMAPIPLD 471
++D+SVPSEL DRVQ NS +T GKP+PA VHEYLVEAYETRVAE EKKKL+ P+PLD
Sbjct: 419 INDISVPSELDDRVQVGNSGRETQTGKPSPAAVHEYLVEAYETRVAEQEKKKLLDPVPLD 478
Query: 472 EEIKAKVSSPKRNWGASWIQQYTILFRRGIKEHRHDYFSWLRITQVLATAVILGLLWWQS 531
EE KAK + KR WG W +QY ILF RG+KE RH+YFSWLR+TQVL+TAVILGLLWWQS
Sbjct: 479 EEAKAKSTRLKRQWGTCWWEQYCILFCRGLKERRHEYFSWLRVTQVLSTAVILGLLWWQS 538
Query: 532 DSKSPKGLEDQVHNLFCWSI 551
D ++P GL+DQ LF ++
Sbjct: 539 DIRTPMGLQDQAGLLFFIAV 558
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FT51|AB27G_ARATH ABC transporter G family member 27 OS=Arabidopsis thaliana GN=ABCG27 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 688 bits (1776), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 357/533 (66%), Positives = 419/533 (78%), Gaps = 9/533 (1%)
Query: 6 SSTSLARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSR-RMLTAASPGRAGAS 64
SS+ L + KS ETL+ A KS SS DG S++ R R L++ S +
Sbjct: 6 SSSGLVKAKS----ETLAEALKS--SSLDFSNGDGSSHGSKQHVRARTLSSPSYSSNSKN 59
Query: 65 GRNTHIRKSRSAQLKLELDEVSSGAALSRASSASLGLSFSFTGFTMPPDEIADSKPFSDD 124
NTHIRK++SA L+L ++ GAALSRASSASLGLSFSFTGFT+P +EI S+ S+D
Sbjct: 60 RWNTHIRKAKSAHPALDLAGLTGGAALSRASSASLGLSFSFTGFTVPHEEIIASERCSND 119
Query: 125 DIPEDIEAGTRERPKFQTEPTLPIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGE 184
DI EDIEA T KFQ EPT PIYLKF D+TYKV KGMTSS EK ILNGI+GS PGE
Sbjct: 120 DILEDIEAATSSVVKFQAEPTFPIYLKFIDITYKVTTKGMTSSSEKSILNGISGSAYPGE 179
Query: 185 VLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHL 244
+LALMGPSGSGKTTLLN L GR + +GGS++YND PYSK LK++IGFVTQDDVLFPHL
Sbjct: 180 LLALMGPSGSGKTTLLNALGGRFNQQNIGGSVSYNDKPYSKHLKTRIGFVTQDDVLFPHL 239
Query: 245 TVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304
TVKETLTY ALLRLP TLT+Q+KE+RA VI ELGLERCQDTMIGGSFVRGVSGGERKRV
Sbjct: 240 TVKETLTYTALLRLPKTLTEQEKEQRAASVIQELGLERCQDTMIGGSFVRGVSGGERKRV 299
Query: 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFD 364
CIGNEI+ NPSLL LDEPTS LDSTTAL+IVQML IA+AGKT+VTTIHQPSSRLFH+FD
Sbjct: 300 CIGNEIMTNPSLLLLDEPTSSLDSTTALKIVQMLHCIAKAGKTIVTTIHQPSSRLFHRFD 359
Query: 365 KLILLGKGSLLYFGKASEAMAYFSSIGCSPQIAMNPAEFLLDLANGNLHDVSVPSELQDR 424
KL++L +GSLLYFGKASEAM+YFSSIGCSP +AMNPAEFLLDL NGN++D+SVPS L+++
Sbjct: 360 KLVVLSRGSLLYFGKASEAMSYFSSIGCSPLLAMNPAEFLLDLVNGNMNDISVPSALKEK 419
Query: 425 VQTENSENDTANGKPTPAIVHEYLVEAYETRVAENEKKKLMAPIPLDEEIKAKVSSPKRN 484
++ E N K + +YL EAY+T++A EK KLMAP+PLDEE+K ++ PKR
Sbjct: 420 MKIIRLELYVRNVKCD--VETQYLEEAYKTQIAVMEKMKLMAPVPLDEEVKLMITCPKRE 477
Query: 485 WGASWIQQYTILFRRGIKEHRHDYFSWLRITQVLATAVILGLLWWQSDSKSPK 537
WG SW +QY +L RGIKE RHDYFSWLR+TQVL+TA+ILGLLWWQSD S +
Sbjct: 478 WGLSWWEQYCLLSLRGIKERRHDYFSWLRVTQVLSTAIILGLLWWQSDITSQR 530
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LK50|AB26G_ARATH ABC transporter G family member 26 OS=Arabidopsis thaliana GN=ABCG26 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 399 bits (1024), Expect = e-110, Method: Compositional matrix adjust.
Identities = 216/433 (49%), Positives = 290/433 (66%), Gaps = 30/433 (6%)
Query: 146 LPIYLKFTDVTYKV---------ILKGMTSSE----------EKDILNGITGSVNPGEVL 186
LPI+LKF DV YKV ++K M S K IL GITGS PGE+L
Sbjct: 61 LPIFLKFEDVEYKVRNSHASSANLVKTMVSKVVTHTNPDPDGYKHILKGITGSTGPGEIL 120
Query: 187 ALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTV 246
ALMGPSGSGKTTLL ++ GRL + V G +TYND PYS S+K +IGFVTQDDVL P LTV
Sbjct: 121 ALMGPSGSGKTTLLKIMGGRLTD-NVKGKLTYNDIPYSPSVKRRIGFVTQDDVLLPQLTV 179
Query: 247 KETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306
+ETL +AA LRLP++++K+QK + +I ELGLERC+ T +GG FV+G+SGGERKR I
Sbjct: 180 EETLAFAAFLRLPSSMSKEQKYAKIEMIIKELGLERCRRTRVGGGFVKGISGGERKRASI 239
Query: 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKL 366
EI+++PSLL LDEPTSGLDST+A +++ +LQ +A+AG+TV+TTIHQPSSR+FH FDKL
Sbjct: 240 AYEILVDPSLLLLDEPTSGLDSTSATKLLHILQGVAKAGRTVITTIHQPSSRMFHMFDKL 299
Query: 367 ILLGKGSLLYFGKASEAMAYFSSIGCSPQIAMNPAEFLLDLANGNLHDVSVPSELQDRVQ 426
+L+ +G ++GKA E+M YFSS+ P+IAMNPAEFLLDLA G + D+S+P EL +
Sbjct: 300 LLISEGHPAFYGKARESMEYFSSLRILPEIAMNPAEFLLDLATGQVSDISLPDEL---LA 356
Query: 427 TENSENDTANGKPTPAIVHEYLVEAYETRVAENEKKKLMAPIPLDEEIKAKVSSPKRNWG 486
+ ++ D+ ++ +YL + Y+T + EK++ E ++ + K++W
Sbjct: 357 AKTAQPDSEE------VLLKYLKQRYKTDLEPKEKEENHRNRKAPEHLQIAIQV-KKDWT 409
Query: 487 ASWIQQYTILFRRGIKEHRHDYFSWLRITQVLATAVILGLLWWQSDSKSPKGLEDQVHNL 546
SW Q+ IL RR +E R DYF LR+ Q L AV+LGLLWW+S + + L DQV +
Sbjct: 410 LSWWDQFLILSRRTFRERRRDYFDKLRLVQSLGVAVVLGLLWWKSKTDTEAHLRDQVGLM 469
Query: 547 FCWSIQLPSPIVF 559
F I S +F
Sbjct: 470 FYICIFWTSSSLF 482
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9C6W5|AB14G_ARATH ABC transporter G family member 14 OS=Arabidopsis thaliana GN=ABCG14 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 378 bits (970), Expect = e-104, Method: Compositional matrix adjust.
Identities = 211/428 (49%), Positives = 278/428 (64%), Gaps = 36/428 (8%)
Query: 138 PKFQTEPTL-----PIYLKFTDVTYKVILK------GMTSSEEKDILNGITGSVNPGEVL 186
P ++P L PI LKF +V YKV ++ G S+EK ILNGITG V PGE L
Sbjct: 36 PTITSQPGLQMSMYPITLKFEEVVYKVKIEQTSQCMGSWKSKEKTILNGITGMVCPGEFL 95
Query: 187 ALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTV 246
A++GPSGSGKTTLL+ L GRL + T G + YN P+S +K + GFV QDDVL+PHLTV
Sbjct: 96 AMLGPSGSGKTTLLSALGGRLSK-TFSGKVMYNGQPFSGCIKRRTGFVAQDDVLYPHLTV 154
Query: 247 KETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306
ETL + ALLRLP++LT+ +K + VI ELGL RC ++MIGG RG+SGGE+KRV I
Sbjct: 155 WETLFFTALLRLPSSLTRDEKAEHVDRVIAELGLNRCTNSMIGGPLFRGISGGEKKRVSI 214
Query: 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKL 366
G E++INPSLL LDEPTSGLDSTTA RIV ++ +A G+TVVTTIHQPSSR++H FDK+
Sbjct: 215 GQEMLINPSLLLLDEPTSGLDSTTAHRIVTTIKRLASGGRTVVTTIHQPSSRIYHMFDKV 274
Query: 367 ILLGKGSLLYFGKASEAMAYFSSIGCSPQIAMNPAEFLLDLANGNLHDVSVPSELQDRVQ 426
+LL +GS +Y+G AS A+ YFSS+G S + +NPA+ LLDLANG +P + Q
Sbjct: 275 VLLSEGSPIYYGAASSAVEYFSSLGFSTSLTVNPADLLLDLANG------IPPD----TQ 324
Query: 427 TENSENDTANGKPTPAIVHEYLVEAYETRVAENEKKKLM-APIPLDEEIKAKVSSPK-RN 484
E SE + V E LV AYE ++ K +L A E KA + K
Sbjct: 325 KETSEQEQKT-------VKETLVSAYEKNISTKLKAELCNAESHSYEYTKAAAKNLKSEQ 377
Query: 485 WGASWIQQYTILFRRGIKEHRHDYFSWLRITQVLATAVILGLLWWQSDSKSPKG-LEDQV 543
W +W Q+T+L +RG++E R + F+ LRI QV++ A + GLLWW +PK ++D+
Sbjct: 378 WCTTWWYQFTVLLQRGVRERRFESFNKLRIFQVISVAFLGGLLWWH----TPKSHIQDRT 433
Query: 544 HNLFCWSI 551
LF +S+
Sbjct: 434 ALLFFFSV 441
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SZR9|AB9G_ARATH ABC transporter G family member 9 OS=Arabidopsis thaliana GN=ABCG9 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 375 bits (964), Expect = e-103, Method: Compositional matrix adjust.
Identities = 202/414 (48%), Positives = 272/414 (65%), Gaps = 38/414 (9%)
Query: 147 PIYLKFTDVTYKVILKGMTS-------SEEKDILNGITGSVNPGEVLALMGPSGSGKTTL 199
P+ LKF ++ Y V LK +EE+ IL G+TG V PGE+LA++GPSGSGKT+L
Sbjct: 34 PVTLKFENLVYTVKLKDSQGCFGKNDKTEERTILKGLTGIVKPGEILAMLGPSGSGKTSL 93
Query: 200 LNLLSGRLMEPT--VGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLR 257
L L GR+ E + G+I+YN+ P SK++K GFVTQDD L+P+LTV ETL + ALLR
Sbjct: 94 LTALGGRVGEGKGKLTGNISYNNKPLSKAVKRTTGFVTQDDALYPNLTVTETLVFTALLR 153
Query: 258 LPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLL 317
LPN+ KQ+K K+A V+ ELGL+RC+DT+IGG F+RGVSGGERKRV IG EI+INPSLL
Sbjct: 154 LPNSFKKQEKIKQAKAVMTELGLDRCKDTIIGGPFLRGVSGGERKRVSIGQEILINPSLL 213
Query: 318 FLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377
FLDEPTSGLDSTTA RIV +L ++A G+TVVTTIHQPSSRLF+ FDKL+LL +G+ +YF
Sbjct: 214 FLDEPTSGLDSTTAQRIVSILWELARGGRTVVTTIHQPSSRLFYMFDKLLLLSEGNPVYF 273
Query: 378 GKASEAMAYFSSIGCSPQIA-MNPAEFLLDLANGNLHDVSVPSELQDRVQTENSENDTAN 436
G S AM YF+S+G SP + +NP++FLLD+ANG V ++ S+
Sbjct: 274 GLGSNAMDYFASVGYSPLVERINPSDFLLDIANG--------------VGSDESQR---- 315
Query: 437 GKPTPAIVHEYLVEAYETRVAE---NEKKKLMAPIPLDEEIKAKVSSPKRNWGASWIQQY 493
P + LV Y+T + + NE K E ++ +W +W QQ+
Sbjct: 316 ----PEAMKAALVAFYKTNLLDSVINEVKGQDDLCNKPRESSRVATNTYGDWPTTWWQQF 371
Query: 494 TILFRRGIKEHRHDYFSWLRITQVLATAVILGLLWWQSDSKSPKGLEDQVHNLF 547
+L +RG+K+ RHD FS +++ Q+ + + GLLWWQ+ L+DQ+ LF
Sbjct: 372 CVLLKRGLKQRRHDSFSGMKVAQIFIVSFLCGLLWWQTKISR---LQDQIGLLF 422
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q84TH5|AB25G_ARATH ABC transporter G family member 25 OS=Arabidopsis thaliana GN=ABCG25 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 366 bits (940), Expect = e-100, Method: Compositional matrix adjust.
Identities = 201/446 (45%), Positives = 273/446 (61%), Gaps = 54/446 (12%)
Query: 135 RERPKFQTEPTLPIYLKFTDVTYKVILKGMT---------------------SSEEKDIL 173
RE + PI LKF DV Y+V + GM+ S+EE+ IL
Sbjct: 25 REPRSLLSSSCFPITLKFVDVCYRVKIHGMSNDSCNIKKLLGLKQKPSDETRSTEERTIL 84
Query: 174 NGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGF 233
+G+TG ++PGE +A++GPSGSGK+TLLN ++GRL + G I ND +K + GF
Sbjct: 85 SGVTGMISPGEFMAVLGPSGSGKSTLLNAVAGRLHGSNLTGKILINDGKITKQTLKRTGF 144
Query: 234 VTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFV 293
V QDD+L+PHLTV+ETL + ALLRLP +LT+ K + A VI+ELGL +C++T++G +F+
Sbjct: 145 VAQDDLLYPHLTVRETLVFVALLRLPRSLTRDVKLRAAESVISELGLTKCENTVVGNTFI 204
Query: 294 RGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTI 352
RG+SGGERKRV I +E++INPSLL LDEPTSGLD+T ALR+VQ L +A GKTVVT+I
Sbjct: 205 RGISGGERKRVSIAHELLINPSLLVLDEPTSGLDATAALRLVQTLAGLAHGKGKTVVTSI 264
Query: 353 HQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIGCSPQIAMNPAEFLLDLANGNL 412
HQPSSR+F FD ++LL +G L+ GK +AMAYF S+G SP MNPA+FLLDLANG
Sbjct: 265 HQPSSRVFQMFDTVLLLSEGKCLFVGKGRDAMAYFESVGFSPAFPMNPADFLLDLANG-- 322
Query: 413 HDVSVPSELQDRVQTENSENDTANGKPTPAIVHEYLVEAYETRVAENEKKKL-MAPIPLD 471
++ T KP V + LV AY+T +A K + ++ P D
Sbjct: 323 --------------VCQTDGVTEREKPN---VRQTLVTAYDTLLAPQVKTCIEVSHFPQD 365
Query: 472 EEIKAKVSSPKRNWG------ASWIQQYTILFRRGIKEHRHDYFSWLRITQVLATAVILG 525
A+ + N G A+W Q IL R +KE RH+ F LRI QV+A +++ G
Sbjct: 366 N---ARFVKTRVNGGGITTCIATWFSQLCILLHRLLKERRHESFDLLRIFQVVAASILCG 422
Query: 526 LLWWQSDSKSPKGLEDQVHNLFCWSI 551
L+WW SD + + D++ LF SI
Sbjct: 423 LMWWHSDYRD---VHDRLGLLFFISI 445
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q7XA72|AB21G_ARATH ABC transporter G family member 21 OS=Arabidopsis thaliana GN=ABCG21 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 352 bits (902), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 194/440 (44%), Positives = 277/440 (62%), Gaps = 33/440 (7%)
Query: 120 PFSDDDIPEDIEAGTRERPKFQTEPTLPIYLKFTDVTYKV---ILKG---MTSSEEKD-- 171
P DDD D + + + PI LKF ++TY + KG S E K
Sbjct: 38 PCLDDDNDHDGPSHQSRQSSVLRQSLRPIILKFEELTYSIKSQTGKGSYWFGSQEPKPNR 97
Query: 172 -ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSK 230
+L ++G V PGE+LA++GPSGSGKTTL+ L+GRL + + G+++YN P++ S+K K
Sbjct: 98 LVLKCVSGIVKPGELLAMLGPSGSGKTTLVTALAGRL-QGKLSGTVSYNGEPFTSSVKRK 156
Query: 231 IGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGG 290
GFVTQDDVL+PHLTV ETLTY ALLRLP LT+++K ++ V+++LGL RC +++IGG
Sbjct: 157 TGFVTQDDVLYPHLTVMETLTYTALLRLPKELTRKEKLEQVEMVVSDLGLTRCCNSVIGG 216
Query: 291 SFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVT 350
+RG+SGGERKRV IG E+++NPSLL LDEPTSGLDSTTA RIV L+ +A G+TVVT
Sbjct: 217 GLIRGISGGERKRVSIGQEMLVNPSLLLLDEPTSGLDSTTAARIVATLRSLARGGRTVVT 276
Query: 351 TIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIGCSPQIA-MNPAEFLLDLAN 409
TIHQPSSRL+ FDK+++L +G +Y G + M YF SIG P + +NPA+F+LDLAN
Sbjct: 277 TIHQPSSRLYRMFDKVLVLSEGCPIYSGDSGRVMEYFGSIGYQPGSSFVNPADFVLDLAN 336
Query: 410 GNLHDVSVPSELQ-----DRVQTENSENDTANGKPTPAIVHEYLVEAYETRVAENEKKKL 464
G D +++ DR++ +NS V + L+ +Y+ + K+++
Sbjct: 337 GITSDTKQYDQIETNGRLDRLEEQNS-------------VKQSLISSYKKNLYPPLKEEV 383
Query: 465 MAPIPLDE-EIKAKVSSPKRNWGASWIQQYTILFRRGIKEHRHDYFSWLRITQVLATAVI 523
P D+ + + + W SW Q+++L +RG+KE H+ FS LRI V++ +++
Sbjct: 384 SRTFPQDQTNARLRKKAITNRWPTSWWMQFSVLLKRGLKERSHESFSGLRIFMVMSVSLL 443
Query: 524 LGLLWWQSDSKSPKGLEDQV 543
GLLWW S L+DQV
Sbjct: 444 SGLLWWHSRVAH---LQDQV 460
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q4GZT4|ABCG2_BOVIN ATP-binding cassette sub-family G member 2 OS=Bos taurus GN=ABCG2 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 238 bits (608), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 148/405 (36%), Positives = 225/405 (55%), Gaps = 16/405 (3%)
Query: 150 LKFTDVTYKVILKG----MTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSG 205
L F ++ Y+V +K + EK+IL I G + PG + A++GP+G GK++LL++L+
Sbjct: 36 LSFHNICYRVKVKTGFLLCRKTIEKEILANINGVMKPG-LNAILGPTGGGKSSLLDILAA 94
Query: 206 RLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQ 265
R + G + N P + K G+V QDDV+ LTV+E L ++A LRLP T+T
Sbjct: 95 RKDPHGLSGDVLINGAPRPANFKCNSGYVVQDDVVMGTLTVRENLQFSAALRLPTTMTSY 154
Query: 266 QKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSG 325
+K +R VI ELGL++ D+ +G F+RGVSGGERKR I E+I +PS+LFLDEPT+G
Sbjct: 155 EKNERINKVIQELGLDKVADSKVGTQFIRGVSGGERKRTSIAMELITDPSILFLDEPTTG 214
Query: 326 LDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385
LDS+TA ++ +L+ +++ G+T++ +IHQP +F FD L LL G L++ G A EA+
Sbjct: 215 LDSSTANAVLLLLKRMSKQGRTIIFSIHQPRYSIFKLFDSLTLLASGRLMFHGPAQEALG 274
Query: 386 YFSSIGCSPQIAMNPAEFLLDLANGNLHDVSVPSELQDRVQTENSENDTANGKPTPAIVH 445
YF +IG + NPA+F LD+ NG+ V + E + E +E + + K TP I
Sbjct: 275 YFGAIGFRCEPYNNPADFFLDIINGDSSAVVLNRE---DIGDEANETEEPSKKDTPLI-- 329
Query: 446 EYLVEAYETRVAENEKKKLMAPIPLDEEIKAKVSSPKRNWGASWIQQYTILFRRGIKEHR 505
E L E Y E K + D+ K S + + S+ Q + RR K
Sbjct: 330 EKLAEFYVNSSFFKETKVELDKFSGDQRRKKLPSYKEVTYATSFCHQLKWISRRSFKNLL 389
Query: 506 HDYFSWLRITQVLATAVILGLL---WWQSDSKSPKGLEDQVHNLF 547
+ I Q++ T V LGL+ + P G++++ LF
Sbjct: 390 GN--PQASIAQLIVT-VFLGLVIGAIFYDLKNDPAGIQNRAGVLF 431
|
Xenobiotic transporter that may play an important role in the exclusion of xenobiotics from the brain. May be involved in brain-to-blood efflux. Bos taurus (taxid: 9913) |
| >sp|Q7TMS5|ABCG2_MOUSE ATP-binding cassette sub-family G member 2 OS=Mus musculus GN=Abcg2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 238 bits (607), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 143/381 (37%), Positives = 219/381 (57%), Gaps = 12/381 (3%)
Query: 150 LKFTDVTYKVILKG---MTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGR 206
L F +TY+V +K + + EK+IL+ I G + PG + A++GP+G GK++LL++L+ R
Sbjct: 37 LSFHHITYRVKVKSGFLVRKTVEKEILSDINGIMKPG-LNAILGPTGGGKSSLLDVLAAR 95
Query: 207 LMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQ 266
+ G + N P K G+V QDDV+ LTV+E L ++A LRLP T+ +
Sbjct: 96 KDPKGLSGDVLINGAPQPAHFKCCSGYVVQDDVVMGTLTVRENLQFSAALRLPTTMKNHE 155
Query: 267 KEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGL 326
K +R +I ELGLE+ D+ +G F+RG+SGGERKR IG E+I +PS+LFLDEPT+GL
Sbjct: 156 KNERINTIIKELGLEKVADSKVGTQFIRGISGGERKRTSIGMELITDPSILFLDEPTTGL 215
Query: 327 DSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAY 386
DS+TA ++ +L+ +++ G+T++ +IHQP +F FD L LL G L++ G A +A+ Y
Sbjct: 216 DSSTANAVLLLLKRMSKQGRTIIFSIHQPRYSIFKLFDSLTLLASGKLVFHGPAQKALEY 275
Query: 387 FSSIGCSPQIAMNPAEFLLDLANGNLHDVSVPSELQDRVQTENSENDTANGKPTPAIVHE 446
F+S G + NPA+F LD+ NG+ V + E QD + +E + KP V E
Sbjct: 276 FASAGYHCEPYNNPADFFLDVINGDSSAVMLNREEQDN-EANKTEEPSKGEKP----VIE 330
Query: 447 YLVEAYETRVAENEKKKLMAPIPLDEEIKAKVSSPKRNWGASWIQQYTILFRRGIKEHRH 506
L E Y E K + +P +E K + + + S+ Q + RR K
Sbjct: 331 NLSEFYINSAIYGETKAELDQLPGAQEKKGTSAFKEPVYVTSFCHQLRWIARRSFKNLLG 390
Query: 507 DYFSWLRITQVLATAVILGLL 527
+ + Q++ T VILGL+
Sbjct: 391 N--PQASVAQLIVT-VILGLI 408
|
Xenobiotic transporter that may play an important role in the exclusion of xenobiotics from the brain. May be involved in brain-to-blood efflux (By similarity). May play a role in early stem cell self-renewal by blocking differentiation. Mus musculus (taxid: 10090) |
| >sp|Q80W57|ABCG2_RAT ATP-binding cassette sub-family G member 2 OS=Rattus norvegicus GN=Abcg2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 234 bits (597), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 141/404 (34%), Positives = 226/404 (55%), Gaps = 15/404 (3%)
Query: 150 LKFTDVTYKVILKG---MTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGR 206
L F +TY+V +K + + EK+IL+ I G + PG + A++GP+G GK++LL++L+ R
Sbjct: 37 LSFHHITYRVKVKSGFLVRKTAEKEILSDINGIMKPG-LNAILGPTGGGKSSLLDVLAAR 95
Query: 207 LMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQ 266
+ G + N P + K G+V QDDV+ LTV+E L ++A LRLP + +
Sbjct: 96 KDPRGLSGDVLINGAPQPANFKCSSGYVVQDDVVMGTLTVRENLQFSAALRLPKAMKTHE 155
Query: 267 KEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGL 326
K +R +I ELGL++ D+ +G F RG+SGGERKR IG E+I +PS+LFLDEPT+GL
Sbjct: 156 KNERINTIIKELGLDKVADSKVGTQFTRGISGGERKRTSIGMELITDPSILFLDEPTTGL 215
Query: 327 DSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAY 386
DS+TA ++ +L+ +++ G+T++ +IHQP +F FD L LL G L++ G A +A+ Y
Sbjct: 216 DSSTANAVLLLLKRMSKQGRTIIFSIHQPRYSIFKLFDSLTLLASGKLMFHGPAQKALEY 275
Query: 387 FSSIGCSPQIAMNPAEFLLDLANGNLHDVSVPSELQDRVQTENSENDTANGKPTPAIVHE 446
F+S G + NPA+F LD+ NG+ V + QD + +E + KP + E
Sbjct: 276 FASAGYHCEPYNNPADFFLDVINGDSSAVMLNRGEQDH-EANKTEEPSKREKP----IIE 330
Query: 447 YLVEAYETRVAENEKKKLMAPIPLDEEIKAKVSSPKRNWGASWIQQYTILFRRGIKEHRH 506
L E Y E K + +P+ ++ K + + + S+ Q + RR K
Sbjct: 331 NLAEFYINSTIYGETKAELDQLPVAQKKKGSSAFREPVYVTSFCHQLRWIARRSFKNLLG 390
Query: 507 DYFSWLRITQVLATAVILGLL---WWQSDSKSPKGLEDQVHNLF 547
+ + Q++ T VILGL+ + P G++++ F
Sbjct: 391 N--PQASVAQLIVT-VILGLIIGALYFGLKNDPTGMQNRAGVFF 431
|
Xenobiotic transporter that may play an important role in the exclusion of xenobiotics from the brain. May be involved in brain-to-blood efflux. Rattus norvegicus (taxid: 10116) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 562 | ||||||
| 224138238 | 744 | white-brown-complex ABC transporter fami | 0.975 | 0.736 | 0.833 | 0.0 | |
| 255566225 | 749 | ATP-binding cassette transporter, putati | 0.976 | 0.732 | 0.816 | 0.0 | |
| 356570916 | 736 | PREDICTED: ABC transporter G family memb | 0.953 | 0.728 | 0.802 | 0.0 | |
| 356500545 | 743 | PREDICTED: ABC transporter G family memb | 0.966 | 0.730 | 0.820 | 0.0 | |
| 356505453 | 740 | PREDICTED: ABC transporter G family memb | 0.966 | 0.733 | 0.793 | 0.0 | |
| 224091479 | 743 | white-brown-complex ABC transporter fami | 0.975 | 0.737 | 0.807 | 0.0 | |
| 356534584 | 738 | PREDICTED: ABC transporter G family memb | 0.960 | 0.731 | 0.810 | 0.0 | |
| 449437512 | 749 | PREDICTED: ABC transporter G family memb | 0.976 | 0.732 | 0.778 | 0.0 | |
| 296089333 | 738 | unnamed protein product [Vitis vinifera] | 0.959 | 0.730 | 0.806 | 0.0 | |
| 297810759 | 750 | abc transporter family protein [Arabidop | 0.975 | 0.730 | 0.755 | 0.0 |
| >gi|224138238|ref|XP_002322764.1| white-brown-complex ABC transporter family [Populus trichocarpa] gi|222867394|gb|EEF04525.1| white-brown-complex ABC transporter family [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 921 bits (2380), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 462/554 (83%), Positives = 509/554 (91%), Gaps = 6/554 (1%)
Query: 1 MEKPVSSTSLARTKSDQLVETLSAAFKSPVSSETAGASDG--GGTLSRKSSRRMLTAASP 58
MEK +TSLART+S+QLVET++AAFKSP ++E G SDG GGTLSRKSS+R++ AASP
Sbjct: 1 MEK--ENTSLARTRSEQLVETVAAAFKSPSNNEAIGVSDGSSGGTLSRKSSKRLMMAASP 58
Query: 59 GRAGASG-RNTHIRKSRSAQLKLELDEVSSGAALSRASSASLGLSFSFTGFTMPPDEIAD 117
GR+ + G +NTHIRKSRSAQ+K +LD+VSSGAALSRASSASLG SFSFTGF MPPDEIAD
Sbjct: 59 GRSTSGGNKNTHIRKSRSAQMKFDLDDVSSGAALSRASSASLGFSFSFTGFNMPPDEIAD 118
Query: 118 SKPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLKFTDVTYKVILKGMTSSEEKDILNGIT 177
SKPFSDDDIPED+EAGTR +PKFQTEPTLPIYLKFTDVTYKVI+KGMTS+EEKDIL GI+
Sbjct: 119 SKPFSDDDIPEDLEAGTR-KPKFQTEPTLPIYLKFTDVTYKVIIKGMTSTEEKDILYGIS 177
Query: 178 GSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQD 237
GSV+PGEVLALMGPSGSGKTTLLNL+ GRL + TVGGS+TYND PYSK LKS+IGFVTQD
Sbjct: 178 GSVDPGEVLALMGPSGSGKTTLLNLIGGRLNQTTVGGSLTYNDQPYSKFLKSRIGFVTQD 237
Query: 238 DVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVS 297
DVLFPHLTVKETLTYAALLRLP TLTK+QK+KRAIDVI ELGLERCQDTMIGGSFVRGVS
Sbjct: 238 DVLFPHLTVKETLTYAALLRLPKTLTKEQKQKRAIDVIYELGLERCQDTMIGGSFVRGVS 297
Query: 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSS 357
GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQ+LQDIAE GKTVVTTIHQPSS
Sbjct: 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQLLQDIAEGGKTVVTTIHQPSS 357
Query: 358 RLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIGCSPQIAMNPAEFLLDLANGNLHDVSV 417
RLFHKFDKLILLGKGSLLYFGKASEAM YFSSIGC+P IAMNPAEFLLDLANGN++DVSV
Sbjct: 358 RLFHKFDKLILLGKGSLLYFGKASEAMLYFSSIGCNPLIAMNPAEFLLDLANGNINDVSV 417
Query: 418 PSELQDRVQTENSENDTANGKPTPAIVHEYLVEAYETRVAENEKKKLMAPIPLDEEIKAK 477
PSEL+D+VQ NSE +T NGKP+PA+VHEYLVEAYETRVA+ EKKKLM PIPLDEE+K+K
Sbjct: 418 PSELEDKVQIGNSEAETRNGKPSPAVVHEYLVEAYETRVADKEKKKLMVPIPLDEEVKSK 477
Query: 478 VSSPKRNWGASWIQQYTILFRRGIKEHRHDYFSWLRITQVLATAVILGLLWWQSDSKSPK 537
VSS KR WGASW +QYTILF RGIKE RHDYFSWLRITQVL+TA+ILGLLWW+SDS SPK
Sbjct: 478 VSSRKRQWGASWWEQYTILFCRGIKERRHDYFSWLRITQVLSTAIILGLLWWKSDSSSPK 537
Query: 538 GLEDQVHNLFCWSI 551
GL+DQ LF ++
Sbjct: 538 GLQDQAGLLFFIAV 551
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255566225|ref|XP_002524100.1| ATP-binding cassette transporter, putative [Ricinus communis] gi|223536668|gb|EEF38310.1| ATP-binding cassette transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 910 bits (2353), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 453/555 (81%), Positives = 505/555 (90%), Gaps = 6/555 (1%)
Query: 1 MEKPVSSTSLARTKSDQLVETLSAAFKSPVSSETAGA----SDGGGTLSRKSSRRMLTAA 56
MEK S TSL RTKSDQLVETL+AAFKSP ++E A A ++ GTLSRKSS+R++ AA
Sbjct: 1 MEK-TSVTSLVRTKSDQLVETLAAAFKSPPTNEAAAAGGTSTESSGTLSRKSSKRLMVAA 59
Query: 57 SPGRAGASGRNTHIRKSRSAQLKLELDEVSSGAALSRASSASLGLSFSFTGFTMPPDEIA 116
SPGR+ SG+NTHIRK+RSAQ+K +LD+++SGAALSRASSASLGLSFSFTGF +P DEIA
Sbjct: 60 SPGRSNGSGKNTHIRKTRSAQMKFDLDDLNSGAALSRASSASLGLSFSFTGFAVPQDEIA 119
Query: 117 DSKPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLKFTDVTYKVILKGMTSSEEKDILNGI 176
D+KPFSDDDIPED+EAG R +PKFQTEPTLPIYLKFTDVTYKVI+KG+ S+EEKDILNGI
Sbjct: 120 DTKPFSDDDIPEDLEAGMR-KPKFQTEPTLPIYLKFTDVTYKVIIKGIASTEEKDILNGI 178
Query: 177 TGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQ 236
+GSV+PG+VLALMGPSGSGKT+LLNLLSGRL+ TVGG+ITYND PY K+LKS+IGFVTQ
Sbjct: 179 SGSVDPGQVLALMGPSGSGKTSLLNLLSGRLIHQTVGGTITYNDQPYCKNLKSRIGFVTQ 238
Query: 237 DDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGV 296
DDVLFPHLTVKETLTYAA LRLP TLT++QKEKRA+DVI ELGLERCQDTMIGGSFVRGV
Sbjct: 239 DDVLFPHLTVKETLTYAARLRLPKTLTREQKEKRALDVIYELGLERCQDTMIGGSFVRGV 298
Query: 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPS 356
SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPS
Sbjct: 299 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPS 358
Query: 357 SRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIGCSPQIAMNPAEFLLDLANGNLHDVS 416
SRLFHKFDKLILLGKGSLLYFGKASE M YFSSIGC+P IAMNPAEFLLDLANGN++DVS
Sbjct: 359 SRLFHKFDKLILLGKGSLLYFGKASETMPYFSSIGCNPLIAMNPAEFLLDLANGNINDVS 418
Query: 417 VPSELQDRVQTENSENDTANGKPTPAIVHEYLVEAYETRVAENEKKKLMAPIPLDEEIKA 476
VPSEL+DRVQ NS+ DT NGKP+P++VHEYLVEAYETRVAE EKKK+M PIPLDEE+K
Sbjct: 419 VPSELEDRVQMGNSDIDTGNGKPSPSVVHEYLVEAYETRVAEMEKKKIMVPIPLDEEVKL 478
Query: 477 KVSSPKRNWGASWIQQYTILFRRGIKEHRHDYFSWLRITQVLATAVILGLLWWQSDSKSP 536
KV+SPKR WGASW QQ+TIL RGIKE RHDYFSWLRITQVL+TAVILGLLWWQS+S+S
Sbjct: 479 KVASPKRLWGASWWQQFTILLCRGIKERRHDYFSWLRITQVLSTAVILGLLWWQSNSRSL 538
Query: 537 KGLEDQVHNLFCWSI 551
KGL+DQ LF ++
Sbjct: 539 KGLQDQSGLLFFIAV 553
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356570916|ref|XP_003553629.1| PREDICTED: ABC transporter G family member 22-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 897 bits (2319), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 439/547 (80%), Positives = 493/547 (90%), Gaps = 11/547 (2%)
Query: 6 SSTSLARTKSDQLVETL-SAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGAS 64
S++SLARTKSDQL+ET+ + A KSP S+E GGG LSRKSS RM TA+SPG G
Sbjct: 5 STSSLARTKSDQLLETVATTAEKSPPSAE------GGGVLSRKSSWRM-TASSPG--GGG 55
Query: 65 GRNTHIRKSRSAQLKLELDEVSSGAALSRASSASLGLSFSFTGFTMPPDEIADSKPFSDD 124
GRNT+IRK+RSAQLK+E+DEV SG ALSRASSASLGLSFSFTGFT+PPDEIADSKPFSDD
Sbjct: 56 GRNTYIRKARSAQLKVEVDEVGSGVALSRASSASLGLSFSFTGFTLPPDEIADSKPFSDD 115
Query: 125 DIPEDIEAGTRERPKFQTEPTLPIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGE 184
DIPEDIEAGT +PKFQTEPTLPIYLKFTDVTYKV++KG+T+++EKDIL GITGSVNPGE
Sbjct: 116 DIPEDIEAGT-PKPKFQTEPTLPIYLKFTDVTYKVVMKGITTTKEKDILKGITGSVNPGE 174
Query: 185 VLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHL 244
VLALMGPSGSGKT+LLNLL GRL++ T+GGSITYND PYSK LKS+IGFVTQDDVLFPHL
Sbjct: 175 VLALMGPSGSGKTSLLNLLGGRLIQSTIGGSITYNDQPYSKFLKSRIGFVTQDDVLFPHL 234
Query: 245 TVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304
TVKETLTYAA LRLPNTLTK+QKEKRA++VI+ELGLERCQDTMIGGS+VRG+SGGERKRV
Sbjct: 235 TVKETLTYAARLRLPNTLTKEQKEKRALEVIDELGLERCQDTMIGGSYVRGISGGERKRV 294
Query: 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFD 364
CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFD
Sbjct: 295 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFD 354
Query: 365 KLILLGKGSLLYFGKASEAMAYFSSIGCSPQIAMNPAEFLLDLANGNLHDVSVPSELQDR 424
KLILLGKGSLLYFGKAS+AM YF IGC+P IAMNPAEFLLDLANGN++D+SVPSEL+D
Sbjct: 355 KLILLGKGSLLYFGKASDAMDYFQFIGCAPLIAMNPAEFLLDLANGNVNDISVPSELKDI 414
Query: 425 VQTENSENDTANGKPTPAIVHEYLVEAYETRVAENEKKKLMAPIPLDEEIKAKVSSPKRN 484
VQ N+E +T NGKP+ ++V EYLVEAY++RVAE EK KLM P+PLD E+K+KV S KR
Sbjct: 415 VQVGNAEAETCNGKPSASVVQEYLVEAYDSRVAEIEKTKLMVPVPLDVELKSKVCSCKRQ 474
Query: 485 WGASWIQQYTILFRRGIKEHRHDYFSWLRITQVLATAVILGLLWWQSDSKSPKGLEDQVH 544
WGASW +Q++ILF RG KE RHDYFSWLRITQVLATAVILGLLWWQSD+K+PKGL+DQ
Sbjct: 475 WGASWFEQFSILFSRGFKERRHDYFSWLRITQVLATAVILGLLWWQSDAKTPKGLQDQAG 534
Query: 545 NLFCWSI 551
LF ++
Sbjct: 535 LLFFIAV 541
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356500545|ref|XP_003519092.1| PREDICTED: ABC transporter G family member 22-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 896 bits (2315), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 456/556 (82%), Positives = 498/556 (89%), Gaps = 13/556 (2%)
Query: 1 MEKPVSSTSLARTKSDQLVETLSAAFKSPVSSETA--GASDGGGTLSRKSSRRMLTAASP 58
MEK ++TSL RTKSDQLVE++ AA KSP SS+ + G +GGGT+SRKSSRR LT ASP
Sbjct: 1 MEK--ANTSLVRTKSDQLVESMVAALKSPASSDHSANGVVEGGGTISRKSSRR-LTGASP 57
Query: 59 GRAGASGRNTHIRKSRSAQ---LKLELDEVSSGAALSRASSASLGLSFSFTGFTMPPDEI 115
GR G +NTHIRKSRSAQ +KLELD+VSSGAALSRASSASLGLSFSFTGFTMPP+EI
Sbjct: 58 GRGG---KNTHIRKSRSAQISQMKLELDDVSSGAALSRASSASLGLSFSFTGFTMPPEEI 114
Query: 116 ADSKPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLKFTDVTYKVILKGMTSSEEKDILNG 175
ADSKPFSDDDIPEDIE+G R KFQTEPTLPIYLKFTDVTYK+++KGMT++EEKDILNG
Sbjct: 115 ADSKPFSDDDIPEDIESGPRT--KFQTEPTLPIYLKFTDVTYKIVIKGMTTTEEKDILNG 172
Query: 176 ITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVT 235
ITGSVNPGEVLALMGPSGSGKTTLLNLL GRL P GGSITYND PYSK LKS+IGFVT
Sbjct: 173 ITGSVNPGEVLALMGPSGSGKTTLLNLLGGRLSHPISGGSITYNDQPYSKFLKSRIGFVT 232
Query: 236 QDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRG 295
QDDVLFPHLTVKETLTYAA LRLP T TK+QKEKRA+DVI ELGLERCQDTMIGGSFVRG
Sbjct: 233 QDDVLFPHLTVKETLTYAARLRLPKTYTKEQKEKRALDVIYELGLERCQDTMIGGSFVRG 292
Query: 296 VSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQP 355
VSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQP
Sbjct: 293 VSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQP 352
Query: 356 SSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIGCSPQIAMNPAEFLLDLANGNLHDV 415
SSRLFHKFDKLILLGKGSLLYFGKASEAM YF SIGCSP I+MNPAEFLLDLANGN++DV
Sbjct: 353 SSRLFHKFDKLILLGKGSLLYFGKASEAMTYFQSIGCSPLISMNPAEFLLDLANGNINDV 412
Query: 416 SVPSELQDRVQTENSENDTANGKPTPAIVHEYLVEAYETRVAENEKKKLMAPIPLDEEIK 475
S+PSEL+D+VQ N+E +T NGKP+PA+VHEYLVEAYETRVAE EKK+LM PIP+DE +K
Sbjct: 413 SLPSELEDKVQMGNAEAETLNGKPSPAVVHEYLVEAYETRVAETEKKRLMVPIPIDEALK 472
Query: 476 AKVSSPKRNWGASWIQQYTILFRRGIKEHRHDYFSWLRITQVLATAVILGLLWWQSDSKS 535
KV S KR WGASW +QY+ILF RGIKE RHDYFSWLRITQVL+TAVILGLLWWQSD+K+
Sbjct: 473 TKVCSHKRQWGASWDEQYSILFWRGIKERRHDYFSWLRITQVLSTAVILGLLWWQSDTKN 532
Query: 536 PKGLEDQVHNLFCWSI 551
PK L+DQ LF ++
Sbjct: 533 PKDLQDQAGLLFFIAV 548
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356505453|ref|XP_003521505.1| PREDICTED: ABC transporter G family member 22-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 891 bits (2303), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 439/553 (79%), Positives = 494/553 (89%), Gaps = 10/553 (1%)
Query: 1 MEKPVSSTSLARTKSDQL-VETL-SAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASP 58
ME +S+SLARTKSDQL VET+ + A KSP S+E GGG LSRKSS RM A SP
Sbjct: 1 MENASTSSSLARTKSDQLAVETVATTAEKSPPSAE------GGGALSRKSSWRMTAAPSP 54
Query: 59 GRAGASGRNTHIRKSRSAQLKLELDEVSSGAALSRASSASLGLSFSFTGFTMPPDEIADS 118
G G RNT+IRK+RSAQLK+E+DEV SG ALSRASSASLGLSFSFTGFT+PPDEIADS
Sbjct: 55 GGGGGG-RNTYIRKARSAQLKVEVDEVGSGVALSRASSASLGLSFSFTGFTLPPDEIADS 113
Query: 119 KPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLKFTDVTYKVILKGMTSSEEKDILNGITG 178
KPFSDDDIPEDIEAGT +PKFQTEPTLPIYLKFTDVTYK+++KG+T+++EKDIL GITG
Sbjct: 114 KPFSDDDIPEDIEAGT-PKPKFQTEPTLPIYLKFTDVTYKLVMKGITTTKEKDILKGITG 172
Query: 179 SVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDD 238
SVNPGEVLALMGPSGSGKT+LLNLL GRL++ T+GGSITYND PYSK LKS+IGFVTQDD
Sbjct: 173 SVNPGEVLALMGPSGSGKTSLLNLLGGRLIQCTIGGSITYNDQPYSKFLKSRIGFVTQDD 232
Query: 239 VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSG 298
VLFPHLTVKETLTYAALLRLPNTL K+QKEKRA++VI ELGLERCQDTMIGGS+VRG+SG
Sbjct: 233 VLFPHLTVKETLTYAALLRLPNTLRKEQKEKRALEVIEELGLERCQDTMIGGSYVRGISG 292
Query: 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSR 358
GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSR
Sbjct: 293 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSR 352
Query: 359 LFHKFDKLILLGKGSLLYFGKASEAMAYFSSIGCSPQIAMNPAEFLLDLANGNLHDVSVP 418
LFHKFDKLILLGKGSLLYFGKAS+AM YF IGC+P IAMNPAEFLLDLANGN++D+SVP
Sbjct: 353 LFHKFDKLILLGKGSLLYFGKASDAMDYFQFIGCAPLIAMNPAEFLLDLANGNVNDISVP 412
Query: 419 SELQDRVQTENSENDTANGKPTPAIVHEYLVEAYETRVAENEKKKLMAPIPLDEEIKAKV 478
SEL+D+VQ N+E +T+NGKP+ ++V EYLVEAY++RVAE EK KLM P+PLDEE+K+KV
Sbjct: 413 SELKDKVQMGNAEAETSNGKPSASVVQEYLVEAYDSRVAEIEKTKLMIPVPLDEELKSKV 472
Query: 479 SSPKRNWGASWIQQYTILFRRGIKEHRHDYFSWLRITQVLATAVILGLLWWQSDSKSPKG 538
S KR WGASW +Q++ILF RG +E RHDYFSWLRITQVLATAVILGLLWWQSD+K+PKG
Sbjct: 473 CSCKRQWGASWFEQFSILFSRGFRERRHDYFSWLRITQVLATAVILGLLWWQSDAKTPKG 532
Query: 539 LEDQVHNLFCWSI 551
L+DQ LF ++
Sbjct: 533 LQDQAGLLFFIAV 545
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224091479|ref|XP_002309268.1| white-brown-complex ABC transporter family [Populus trichocarpa] gi|222855244|gb|EEE92791.1| white-brown-complex ABC transporter family [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 876 bits (2263), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 446/552 (80%), Positives = 495/552 (89%), Gaps = 4/552 (0%)
Query: 1 MEKPVSSTSLARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGR 60
ME+ ++TSLARTKS+QL ET+ AAFKSP++++ GGTLS KSS+R+ TAASPGR
Sbjct: 1 MER--ANTSLARTKSEQLAETVEAAFKSPMNNDGVSEGGSGGTLSGKSSKRLTTAASPGR 58
Query: 61 AGASG-RNTHIRKSRSAQLKLELDEVSSGAALSRASSASLGLSFSFTGFTMPPDEIADSK 119
+ G +NTHIRKSRSAQ+K ELD+V+SGAALSRASSASLG SFSFTGF MPPDEIADS
Sbjct: 59 TTSGGNKNTHIRKSRSAQMKFELDDVNSGAALSRASSASLGFSFSFTGFNMPPDEIADSM 118
Query: 120 PFSDDDIPEDIEAGTRERPKFQTEPTLPIYLKFTDVTYKVILKGMTSSEEKDILNGITGS 179
PFSDDDIPED+EAG R++ KFQTEP+LPIYLKF DVTYKVI+KGMTS+EEKDILNGI+GS
Sbjct: 119 PFSDDDIPEDLEAGMRKQ-KFQTEPSLPIYLKFRDVTYKVIIKGMTSTEEKDILNGISGS 177
Query: 180 VNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDV 239
V+PGEVLALMGPSGSGKTTLLNLL GRL +PTVGGSITYND PYSK LKS+IGFVTQDD+
Sbjct: 178 VDPGEVLALMGPSGSGKTTLLNLLGGRLNQPTVGGSITYNDGPYSKFLKSRIGFVTQDDI 237
Query: 240 LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299
LFPHLTVKETLTYAALLRLP TLTKQQK+KRA+DVI ELGLERCQDT+IGGSFVRGVSGG
Sbjct: 238 LFPHLTVKETLTYAALLRLPKTLTKQQKQKRAMDVIYELGLERCQDTVIGGSFVRGVSGG 297
Query: 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRL 359
ERKRVCIGNEIIINPS+LFLDEPTSGLDSTTAL+ VQ+LQD+AE GKTVVTTIHQPSSRL
Sbjct: 298 ERKRVCIGNEIIINPSILFLDEPTSGLDSTTALKTVQLLQDMAEGGKTVVTTIHQPSSRL 357
Query: 360 FHKFDKLILLGKGSLLYFGKASEAMAYFSSIGCSPQIAMNPAEFLLDLANGNLHDVSVPS 419
FHKFDKLILLGKGSLLYFGK+SEAM YFSSIGC+P IAMNPAEFLLDLANGN++DVSVPS
Sbjct: 358 FHKFDKLILLGKGSLLYFGKSSEAMLYFSSIGCNPLIAMNPAEFLLDLANGNINDVSVPS 417
Query: 420 ELQDRVQTENSENDTANGKPTPAIVHEYLVEAYETRVAENEKKKLMAPIPLDEEIKAKVS 479
EL D+VQ NS+ NGKP+PA+VHEYLVEAYETRVA EKKKLM PIPLDEE+KAKVS
Sbjct: 418 ELDDKVQIVNSDAGKRNGKPSPAVVHEYLVEAYETRVAVKEKKKLMVPIPLDEEVKAKVS 477
Query: 480 SPKRNWGASWIQQYTILFRRGIKEHRHDYFSWLRITQVLATAVILGLLWWQSDSKSPKGL 539
S KR WGASW QQYTILF RGIKE RHDYFSWLRITQVL+TA+ILGLLWW SD+ S KGL
Sbjct: 478 SLKRQWGASWWQQYTILFCRGIKERRHDYFSWLRITQVLSTAIILGLLWWNSDTNSLKGL 537
Query: 540 EDQVHNLFCWSI 551
+DQ LF ++
Sbjct: 538 QDQAGLLFFIAV 549
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356534584|ref|XP_003535833.1| PREDICTED: ABC transporter G family member 22-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 872 bits (2254), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 449/554 (81%), Positives = 488/554 (88%), Gaps = 14/554 (2%)
Query: 1 MEKPVSSTSLARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGR 60
MEK ++TSL RTKSDQL+E++ A KSP SS+ S G SRKSSR LT ASPGR
Sbjct: 1 MEK--ANTSLVRTKSDQLLESMVAGLKSPPSSD---HSANGVVDSRKSSR-WLTGASPGR 54
Query: 61 AGASGRNTHIRKSRSAQ---LKLELDEVSSGAALSRASSASLGLSFSFTGFTMPPDEIAD 117
G +NTHIRKSRSAQ +KLELD+VSSGAALSRASSASLGLSFSFTGFTMPP+EIAD
Sbjct: 55 GG---KNTHIRKSRSAQISQMKLELDDVSSGAALSRASSASLGLSFSFTGFTMPPEEIAD 111
Query: 118 SKPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLKFTDVTYKVILKGMTSSEEKDILNGIT 177
SKPFSDDDIPEDIEAG R KFQTEPTLPIYLKFTDVTYK+++KGMT++EEKDILNGIT
Sbjct: 112 SKPFSDDDIPEDIEAGPRT--KFQTEPTLPIYLKFTDVTYKIVIKGMTTTEEKDILNGIT 169
Query: 178 GSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQD 237
GSVNPGEVLALMGPSGSGKTTLLNLL GRL P GGSITYND PYSK LKS+IGFVTQD
Sbjct: 170 GSVNPGEVLALMGPSGSGKTTLLNLLGGRLSHPISGGSITYNDQPYSKFLKSRIGFVTQD 229
Query: 238 DVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVS 297
DVLFPHLTVKETLTYAA LRLP TK+QKEKRA+DVI ELGLERCQDTMIGGSFVRGVS
Sbjct: 230 DVLFPHLTVKETLTYAARLRLPKAYTKEQKEKRALDVIYELGLERCQDTMIGGSFVRGVS 289
Query: 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSS 357
GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSS
Sbjct: 290 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSS 349
Query: 358 RLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIGCSPQIAMNPAEFLLDLANGNLHDVSV 417
RLFHKFDKLILLGKGSLLYFGKASE M YF SIGCSP I+MNPAEFLLDLANGN++DVS+
Sbjct: 350 RLFHKFDKLILLGKGSLLYFGKASETMTYFQSIGCSPLISMNPAEFLLDLANGNINDVSL 409
Query: 418 PSELQDRVQTENSENDTANGKPTPAIVHEYLVEAYETRVAENEKKKLMAPIPLDEEIKAK 477
PSEL+D+VQ N+E +T NGKP+PA+VHEYLVEAYETRVAE EKK+LM PIPLDE +K K
Sbjct: 410 PSELEDKVQMGNAEAETQNGKPSPAVVHEYLVEAYETRVAETEKKRLMVPIPLDEALKTK 469
Query: 478 VSSPKRNWGASWIQQYTILFRRGIKEHRHDYFSWLRITQVLATAVILGLLWWQSDSKSPK 537
V S KR WGASW +Q++ILF RGIKE RHDYFSWLRITQVL+TAVILGLLWWQSD+K+PK
Sbjct: 470 VCSHKRQWGASWDEQFSILFWRGIKERRHDYFSWLRITQVLSTAVILGLLWWQSDTKNPK 529
Query: 538 GLEDQVHNLFCWSI 551
L+DQ LF ++
Sbjct: 530 DLQDQAGLLFFIAV 543
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449437512|ref|XP_004136536.1| PREDICTED: ABC transporter G family member 22-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 848 bits (2190), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 433/556 (77%), Positives = 489/556 (87%), Gaps = 7/556 (1%)
Query: 1 MEKPVSSTSLARTKSDQLVETLSAAFKSPVSSETAGA---SDGGGTLSRKSSRRMLTAAS 57
MEK SS LARTKSDQL+E ++AAFKSP+SS A G TLSRKSS++ LTA S
Sbjct: 1 MEK-TSSLGLARTKSDQLLEKVAAAFKSPMSSTEANGVVGESGSTTLSRKSSKQTLTAPS 59
Query: 58 PGRAGASGR--NTHIRKSRSAQLKLELDEVSSGAALSRASSASLGLSFSFTGFTMPPDEI 115
PGR SG NTHIRKSRSAQLKL+LD++ SGAALSRASSASLGLSFSFTGFT+PPDEI
Sbjct: 60 PGRGSGSGGGRNTHIRKSRSAQLKLDLDDLGSGAALSRASSASLGLSFSFTGFTLPPDEI 119
Query: 116 ADSKPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLKFTDVTYKVILKGMTSSEEKDILNG 175
D KPFSD+DIPED+EAGT + +FQTEPT+PI+LKF DVTYKVI+KG+ ++ EK+ILNG
Sbjct: 120 GDFKPFSDEDIPEDVEAGTC-KTRFQTEPTMPIHLKFKDVTYKVIIKGLRTNVEKEILNG 178
Query: 176 ITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVT 235
ITG VNPGEVLALMGPSGSGKTTLLNLL GR++ T GGS+TYND PY+K LKS+IGFV
Sbjct: 179 ITGLVNPGEVLALMGPSGSGKTTLLNLLGGRIIRSTAGGSVTYNDQPYNKFLKSRIGFVM 238
Query: 236 QDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRG 295
Q+DVLFPHLTVKETL YAALLRLPNTLTK+QKEKRAIDVI ELGLERCQDTMIGGSFVRG
Sbjct: 239 QEDVLFPHLTVKETLRYAALLRLPNTLTKEQKEKRAIDVIYELGLERCQDTMIGGSFVRG 298
Query: 296 VSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQP 355
VSGGER+RV IGNEIIINPSLLFLDEPTSGLDSTTALRIVQ+L +IAEAGKTVVTTIHQP
Sbjct: 299 VSGGERRRVSIGNEIIINPSLLFLDEPTSGLDSTTALRIVQILHEIAEAGKTVVTTIHQP 358
Query: 356 SSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIGCSPQIAMNPAEFLLDLANGNLHDV 415
SSRLFHKFDKLILLGKGSL+Y+GKA+EAM YF+SIGCSP IAMNPAEFLLDLANGNL DV
Sbjct: 359 SSRLFHKFDKLILLGKGSLIYYGKAAEAMNYFASIGCSPLIAMNPAEFLLDLANGNLSDV 418
Query: 416 SVPSELQDRVQTENSENDTANGKPTPAIVHEYLVEAYETRVAENEKKKLMAPIPLDEEIK 475
SVPSEL+D+VQ ENSE D+ +P+P +V EYLVEAYETRVAE EK+K++ P+ LDEE+K
Sbjct: 419 SVPSELEDKVQMENSEADSRQDRPSPILVQEYLVEAYETRVAEKEKRKMLTPLTLDEELK 478
Query: 476 AKVSSPKRNWGASWIQQYTILFRRGIKEHRHDYFSWLRITQVLATAVILGLLWWQSDSKS 535
+KVS+ +R WGASW +QY+ILFRRGIKE RH+YFSWLRITQVLATAVILGLLWWQS+SKS
Sbjct: 479 SKVSNSRRQWGASWWEQYSILFRRGIKERRHEYFSWLRITQVLATAVILGLLWWQSESKS 538
Query: 536 PKGLEDQVHNLFCWSI 551
PKGL+DQ LF ++
Sbjct: 539 PKGLQDQAGLLFFIAV 554
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296089333|emb|CBI39105.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 839 bits (2167), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 438/543 (80%), Positives = 485/543 (89%), Gaps = 4/543 (0%)
Query: 12 RTKSDQLVETLSAA---FKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNT 68
RTKSDQLVET A +SP S E G ++ GGTLSRKSSRR + +ASPGRAG + +NT
Sbjct: 2 RTKSDQLVETAEAVAAAMRSPTSGEATGGAESGGTLSRKSSRRSMMSASPGRAGGNSKNT 61
Query: 69 HIRKSRSAQLKLELDEVSSGAALSRASSASLGLSFSFTGFTMPPDEIADSKPFSDDDIPE 128
HIRKSRSAQ+KL+LDEVSSGAALSRASSASLG SFSFTGFT+PPDEI+D KPFSDDD P+
Sbjct: 62 HIRKSRSAQIKLDLDEVSSGAALSRASSASLGFSFSFTGFTVPPDEISDFKPFSDDDTPD 121
Query: 129 DIEAGTRERPKFQTEPTLPIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLAL 188
D+EAG R++ + Q EPTLPIYLKF DVTYKVILKGM ++ EK+ILNGITGSVNPGEVLAL
Sbjct: 122 DLEAGMRKQ-RIQAEPTLPIYLKFKDVTYKVILKGMRTNVEKEILNGITGSVNPGEVLAL 180
Query: 189 MGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKE 248
MGPSGSGKTTLLNLL GRL +PT GGS+TYND PYSKSLKSKIGFVTQDDVLFPHLTV+E
Sbjct: 181 MGPSGSGKTTLLNLLGGRLNQPTAGGSVTYNDQPYSKSLKSKIGFVTQDDVLFPHLTVRE 240
Query: 249 TLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGN 308
TLTYAA LRLP TLTKQQKEKRA+DVI ELGL+RCQDTMIGGSFVRGVSGGERKRV IGN
Sbjct: 241 TLTYAARLRLPKTLTKQQKEKRAVDVIYELGLDRCQDTMIGGSFVRGVSGGERKRVSIGN 300
Query: 309 EIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLIL 368
EIIINPSLLFLDEPTSGLDSTTALRIVQML DIAEAGKTV+TTIHQPSSRLFHKFDKLIL
Sbjct: 301 EIIINPSLLFLDEPTSGLDSTTALRIVQMLHDIAEAGKTVLTTIHQPSSRLFHKFDKLIL 360
Query: 369 LGKGSLLYFGKASEAMAYFSSIGCSPQIAMNPAEFLLDLANGNLHDVSVPSELQDRVQTE 428
LGKG+LLYFGKAS M YFSSIGCSP I MNPAEFLLDLANGNL+DVS+PSEL+D+VQTE
Sbjct: 361 LGKGNLLYFGKASGTMEYFSSIGCSPLITMNPAEFLLDLANGNLNDVSIPSELEDKVQTE 420
Query: 429 NSENDTANGKPTPAIVHEYLVEAYETRVAENEKKKLMAPIPLDEEIKAKVSSPKRNWGAS 488
+SE +T NGKP+PA VHEYLVEAYETRVA+ EKKKLM PIP+DEE+K+KV SPKR WGAS
Sbjct: 421 HSETETRNGKPSPADVHEYLVEAYETRVADQEKKKLMIPIPIDEELKSKVCSPKREWGAS 480
Query: 489 WIQQYTILFRRGIKEHRHDYFSWLRITQVLATAVILGLLWWQSDSKSPKGLEDQVHNLFC 548
W +QY+ILFRRG+KE RHDYFSWLR+TQV +TA ILGLLWWQS+S +PKGL+DQ LF
Sbjct: 481 WWEQYSILFRRGLKERRHDYFSWLRVTQVASTATILGLLWWQSESTNPKGLQDQAGLLFF 540
Query: 549 WSI 551
++
Sbjct: 541 IAV 543
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297810759|ref|XP_002873263.1| abc transporter family protein [Arabidopsis lyrata subsp. lyrata] gi|297319100|gb|EFH49522.1| abc transporter family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 839 bits (2167), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 423/560 (75%), Positives = 485/560 (86%), Gaps = 12/560 (2%)
Query: 1 MEKPVSSTSLARTKSDQLVETLSAAFKSP--------VSSETAGASDGGGTLSRKSSRRM 52
MEKP ++ LART+S+QL ET++AA +SP V + A GGGTLSRKSSRR+
Sbjct: 1 MEKPPLASGLARTRSEQLYETVAAAIRSPHGSMDANGVPATAPAAVGGGGTLSRKSSRRL 60
Query: 53 LTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSGAALSRASSASLGLSFSFTGFTMPP 112
+ ASPGR+G +G THIRKSRSAQLKLEL+EVSSGAALSRASSASLGLSFSFTGF MPP
Sbjct: 61 MMGASPGRSGGAG--THIRKSRSAQLKLELEEVSSGAALSRASSASLGLSFSFTGFAMPP 118
Query: 113 DEIADSKPFSDDD-IPEDIEAGTRERPKFQTEPTLPIYLKFTDVTYKVILKGMTSSEEKD 171
+EI+DSKPFSD++ IPEDIEAG +++PKFQ EPTLPI+LKF DVTYKV++K +TSS EK+
Sbjct: 119 EEISDSKPFSDEEMIPEDIEAG-KKKPKFQAEPTLPIFLKFRDVTYKVVIKKLTSSAEKE 177
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKI 231
IL GI+GSV+PGEVLALMGPSGSGKTTLL+LL+GR+ + + GGSITYND PYSK LKSKI
Sbjct: 178 ILTGISGSVSPGEVLALMGPSGSGKTTLLSLLAGRISQSSTGGSITYNDKPYSKYLKSKI 237
Query: 232 GFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGS 291
GFVTQDDVLFPHLTVKETLTYAA LRLP TLT++QK++RA+DVI ELGLERCQDTMIGG+
Sbjct: 238 GFVTQDDVLFPHLTVKETLTYAARLRLPKTLTREQKKQRALDVIQELGLERCQDTMIGGA 297
Query: 292 FVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTT 351
FVRGVSGGERKRV IGNEIIINPSLL LDEPTSGLDSTTALR + ML DIAEAGKTV+TT
Sbjct: 298 FVRGVSGGERKRVSIGNEIIINPSLLLLDEPTSGLDSTTALRTILMLHDIAEAGKTVITT 357
Query: 352 IHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIGCSPQIAMNPAEFLLDLANGN 411
IHQPSSRLFH+FDKLILLG+GSLLYFGK+SEA+ YFSSIGCSP IAMNPAEFLLDLANGN
Sbjct: 358 IHQPSSRLFHRFDKLILLGRGSLLYFGKSSEALDYFSSIGCSPLIAMNPAEFLLDLANGN 417
Query: 412 LHDVSVPSELQDRVQTENSENDTANGKPTPAIVHEYLVEAYETRVAENEKKKLMAPIPLD 471
++D+SVPSEL DRVQ NS +T GKP+P IVHEYLVEAYETRVAE EKKKL+ P+PLD
Sbjct: 418 INDISVPSELDDRVQVGNSGRETQTGKPSPTIVHEYLVEAYETRVAEQEKKKLLDPVPLD 477
Query: 472 EEIKAKVSSPKRNWGASWIQQYTILFRRGIKEHRHDYFSWLRITQVLATAVILGLLWWQS 531
EE KAK + KR WGA W +QY ILF RG+KE RH+YFSWLR+TQVL+TAVILGLLWWQS
Sbjct: 478 EEAKAKSTRLKRQWGAGWWEQYCILFCRGLKERRHEYFSWLRVTQVLSTAVILGLLWWQS 537
Query: 532 DSKSPKGLEDQVHNLFCWSI 551
D ++P GL+DQ LF ++
Sbjct: 538 DIRTPVGLQDQAGLLFFIAV 557
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 562 | ||||||
| TAIR|locus:2144133 | 751 | ABCG22 "ATP-binding cassette G | 0.966 | 0.723 | 0.708 | 6.9e-205 | |
| TAIR|locus:2090009 | 685 | ABCG26 "ATP-binding cassette G | 0.653 | 0.535 | 0.526 | 3e-101 | |
| TAIR|locus:2028656 | 648 | ABCG14 "ATP-binding cassette G | 0.653 | 0.566 | 0.498 | 1e-91 | |
| TAIR|locus:2016089 | 662 | ABCG25 "ATP-binding casette G2 | 0.720 | 0.611 | 0.449 | 3.2e-88 | |
| DICTYBASE|DDB_G0269214 | 793 | abcG1 "ABC transporter G famil | 0.503 | 0.356 | 0.408 | 3.8e-60 | |
| MGI|MGI:1347061 | 657 | Abcg2 "ATP-binding cassette, s | 0.653 | 0.558 | 0.378 | 3.9e-60 | |
| TAIR|locus:2173184 | 727 | ABCG6 "ATP-binding cassette G6 | 0.654 | 0.506 | 0.366 | 7.8e-60 | |
| UNIPROTKB|B2D1N9 | 658 | ABCG2 "ATP-binding cassette su | 0.686 | 0.586 | 0.370 | 1e-59 | |
| UNIPROTKB|Q4GZT4 | 655 | ABCG2 "ATP-binding cassette su | 0.686 | 0.589 | 0.370 | 1e-59 | |
| TAIR|locus:2092960 | 691 | ABCG15 "ATP-binding cassette G | 0.699 | 0.568 | 0.353 | 1e-59 |
| TAIR|locus:2144133 ABCG22 "ATP-binding cassette G22" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1982 (702.8 bits), Expect = 6.9e-205, P = 6.9e-205
Identities = 394/556 (70%), Positives = 451/556 (81%)
Query: 1 MEKPVSSTSLARTKSDQLVETLSAAFKSPVSS-------ETAGAS-DGGGTLSRKSSRRM 52
MEKP ++ LART+S+QL ET++A +SP S TA A+ GGGTLSRKSSRR+
Sbjct: 3 MEKPPLASGLARTRSEQLYETVAADIRSPHGSMDANGVPATAPAAVGGGGTLSRKSSRRL 62
Query: 53 LTXXXXXXXXXXXXNTHIRKSRSAQLKLELDEVXXXXXXXXXXXXXXXXXXXXXXXTMPP 112
+ THIRKSRSAQLKLEL+EV MPP
Sbjct: 63 M---GMSPGRSSGAGTHIRKSRSAQLKLELEEVSSGAALSRASSASLGLSFSFTGFAMPP 119
Query: 113 DEIADSKPFSDDD-IPEDIEAGTRERPKFQTEPTLPIYLKFTDVTYKVILKGMTSSEEKD 171
+EI+DSKPFSDD+ IPEDIEAG +++PKFQ EPTLPI+LKF DVTYKV++K +TSS EK+
Sbjct: 120 EEISDSKPFSDDEMIPEDIEAG-KKKPKFQAEPTLPIFLKFRDVTYKVVIKKLTSSVEKE 178
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKI 231
IL GI+GSVNPGEVLALMGPSGSGKTTLL+LL+GR+ + + GGS+TYND PYSK LKSKI
Sbjct: 179 ILTGISGSVNPGEVLALMGPSGSGKTTLLSLLAGRISQSSTGGSVTYNDKPYSKYLKSKI 238
Query: 232 GFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGS 291
GFVTQDDVLFPHLTVKETLTYAA LRLP TLT++QK++RA+DVI ELGLERCQDTMIGG+
Sbjct: 239 GFVTQDDVLFPHLTVKETLTYAARLRLPKTLTREQKKQRALDVIQELGLERCQDTMIGGA 298
Query: 292 FVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTT 351
FVRGVSGGERKRV IGNEIIINPSLL LDEPTSGLDSTTALR + ML DIAEAGKTV+TT
Sbjct: 299 FVRGVSGGERKRVSIGNEIIINPSLLLLDEPTSGLDSTTALRTILMLHDIAEAGKTVITT 358
Query: 352 IHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIGCSPQIAMNPAEFLLDLANGN 411
IHQPSSRLFH+FDKLILLG+GSLLYFGK+SEA+ YFSSIGCSP IAMNPAEFLLDLANGN
Sbjct: 359 IHQPSSRLFHRFDKLILLGRGSLLYFGKSSEALDYFSSIGCSPLIAMNPAEFLLDLANGN 418
Query: 412 LHDVSVPSELQDRVQTENSENDTANGKPTPAIVHEYLVEAYETRVAENEKKKLMAPIPLD 471
++D+SVPSEL DRVQ NS +T GKP+PA VHEYLVEAYETRVAE EKKKL+ P+PLD
Sbjct: 419 INDISVPSELDDRVQVGNSGRETQTGKPSPAAVHEYLVEAYETRVAEQEKKKLLDPVPLD 478
Query: 472 EEIKAKVSSPKRNWGASWIQQYTILFRRGIKEHRHDYFSWLRITQVLATAVILGLLWWQS 531
EE KAK + KR WG W +QY ILF RG+KE RH+YFSWLR+TQVL+TAVILGLLWWQS
Sbjct: 479 EEAKAKSTRLKRQWGTCWWEQYCILFCRGLKERRHEYFSWLRVTQVLSTAVILGLLWWQS 538
Query: 532 DSKSPKGLEDQVHNLF 547
D ++P GL+DQ LF
Sbjct: 539 DIRTPMGLQDQAGLLF 554
|
|
| TAIR|locus:2090009 ABCG26 "ATP-binding cassette G26" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1004 (358.5 bits), Expect = 3.0e-101, P = 3.0e-101
Identities = 199/378 (52%), Positives = 269/378 (71%)
Query: 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKS 229
K IL GITGS PGE+LALMGPSGSGKTTLL ++ GRL + V G +TYND PYS S+K
Sbjct: 104 KHILKGITGSTGPGEILALMGPSGSGKTTLLKIMGGRLTD-NVKGKLTYNDIPYSPSVKR 162
Query: 230 KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIG 289
+IGFVTQDDVL P LTV+ETL +AA LRLP++++K+QK + +I ELGLERC+ T +G
Sbjct: 163 RIGFVTQDDVLLPQLTVEETLAFAAFLRLPSSMSKEQKYAKIEMIIKELGLERCRRTRVG 222
Query: 290 GSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVV 349
G FV+G+SGGERKR I EI+++PSLL LDEPTSGLDST+A +++ +LQ +A+AG+TV+
Sbjct: 223 GGFVKGISGGERKRASIAYEILVDPSLLLLDEPTSGLDSTSATKLLHILQGVAKAGRTVI 282
Query: 350 TTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIGCSPQIAMNPAEFLLDLAN 409
TTIHQPSSR+FH FDKL+L+ +G ++GKA E+M YFSS+ P+IAMNPAEFLLDLA
Sbjct: 283 TTIHQPSSRMFHMFDKLLLISEGHPAFYGKARESMEYFSSLRILPEIAMNPAEFLLDLAT 342
Query: 410 GNLHDVSVPSELQDRVQTENSENDTANGKPTPAIVHEYLVEAYETRVAENEKKKLMAPIP 469
G + D+S+P EL + + ++ D+ ++ +YL + Y+T + EK++
Sbjct: 343 GQVSDISLPDEL---LAAKTAQPDSEE------VLLKYLKQRYKTDLEPKEKEENHRNRK 393
Query: 470 LDEEIKAKVSSPKRNWGASWIQQYTILFRRGIKEHRHDYFSWLRITQVLATAVILGLLWW 529
E ++ + K++W SW Q+ IL RR +E R DYF LR+ Q L AV+LGLLWW
Sbjct: 394 APEHLQIAIQV-KKDWTLSWWDQFLILSRRTFRERRRDYFDKLRLVQSLGVAVVLGLLWW 452
Query: 530 QSDSKSPKGLEDQVHNLF 547
+S + + L DQV +F
Sbjct: 453 KSKTDTEAHLRDQVGLMF 470
|
|
| TAIR|locus:2028656 ABCG14 "ATP-binding cassette G14" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 914 (326.8 bits), Expect = 1.0e-91, P = 1.0e-91
Identities = 196/393 (49%), Positives = 257/393 (65%)
Query: 147 PIYLKFTDVTYKVILK------GMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLL 200
PI LKF +V YKV ++ G S+EK ILNGITG V PGE LA++GPSGSGKTTLL
Sbjct: 50 PITLKFEEVVYKVKIEQTSQCMGSWKSKEKTILNGITGMVCPGEFLAMLGPSGSGKTTLL 109
Query: 201 NLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPN 260
+ L GRL + T G + YN P+S +K + GFV QDDVL+PHLTV ETL + ALLRLP+
Sbjct: 110 SALGGRLSK-TFSGKVMYNGQPFSGCIKRRTGFVAQDDVLYPHLTVWETLFFTALLRLPS 168
Query: 261 TLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLD 320
+LT+ +K + VI ELGL RC ++MIGG RG+SGGE+KRV IG E++INPSLL LD
Sbjct: 169 SLTRDEKAEHVDRVIAELGLNRCTNSMIGGPLFRGISGGEKKRVSIGQEMLINPSLLLLD 228
Query: 321 EPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 380
EPTSGLDSTTA RIV ++ +A G+TVVTTIHQPSSR++H FDK++LL +GS +Y+G A
Sbjct: 229 EPTSGLDSTTAHRIVTTIKRLASGGRTVVTTIHQPSSRIYHMFDKVVLLSEGSPIYYGAA 288
Query: 381 SEAMAYFSSIGCSPQIAMNPAEFLLDLANGNLHDVSVPSELQDRVQTENSENDTANGKPT 440
S A+ YFSS+G S + +NPA+ LLDLANG +P + Q E SE + K T
Sbjct: 289 SSAVEYFSSLGFSTSLTVNPADLLLDLANG------IPPD----TQKETSEQEQKTVKET 338
Query: 441 PAIVHEYLVEA-YETRVAENEKKKLMAPIPLDEEIKAKVSSPK-RNWGASWIQQYTILFR 498
+E + + + E E KA + K W +W Q+T+L +
Sbjct: 339 LVSAYEKNISTKLKAELCNAESHSY-------EYTKAAAKNLKSEQWCTTWWYQFTVLLQ 391
Query: 499 RGIKEHRHDYFSWLRITQVLATAVILGLLWWQS 531
RG++E R + F+ LRI QV++ A + GLLWW +
Sbjct: 392 RGVRERRFESFNKLRIFQVISVAFLGGLLWWHT 424
|
|
| TAIR|locus:2016089 ABCG25 "ATP-binding casette G25" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 881 (315.2 bits), Expect = 3.2e-88, P = 3.2e-88
Identities = 204/454 (44%), Positives = 277/454 (61%)
Query: 124 DDIPEDIEAGTRERPKFQTEPTLPIYLKFTDVTYKVILKGMT------------------ 165
D P + RE + PI LKF DV Y+V + GM+
Sbjct: 15 DSSPR-LSQDPREPRSLLSSSCFPITLKFVDVCYRVKIHGMSNDSCNIKKLLGLKQKPSD 73
Query: 166 ---SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP 222
S+EE+ IL+G+TG ++PGE +A++GPSGSGK+TLLN ++GRL + G I ND
Sbjct: 74 ETRSTEERTILSGVTGMISPGEFMAVLGPSGSGKSTLLNAVAGRLHGSNLTGKILINDGK 133
Query: 223 YSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER 282
+K + GFV QDD+L+PHLTV+ETL + ALLRLP +LT+ K + A VI+ELGL +
Sbjct: 134 ITKQTLKRTGFVAQDDLLYPHLTVRETLVFVALLRLPRSLTRDVKLRAAESVISELGLTK 193
Query: 283 CQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA 342
C++T++G +F+RG+SGGERKRV I +E++INPSLL LDEPTSGLD+T ALR+VQ L +A
Sbjct: 194 CENTVVGNTFIRGISGGERKRVSIAHELLINPSLLVLDEPTSGLDATAALRLVQTLAGLA 253
Query: 343 EA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIGCSPQIAMNPA 401
GKTVVT+IHQPSSR+F FD ++LL +G L+ GK +AMAYF S+G SP MNPA
Sbjct: 254 HGKGKTVVTSIHQPSSRVFQMFDTVLLLSEGKCLFVGKGRDAMAYFESVGFSPAFPMNPA 313
Query: 402 EFLLDLANGNLHDVSVPSELQDRVQTENSENDTANGKPTPAIVHEYLVEAYETRVAENEK 461
+FLLDLANG QT+ T KP V + LV AY+T +A K
Sbjct: 314 DFLLDLANGVC-------------QTDGV---TEREKPN---VRQTLVTAYDTLLAPQVK 354
Query: 462 KKL-MAPIPLDEE--IKAKVSSPK-RNWGASWIQQYTILFRRGIKEHRHDYFSWLRITQV 517
+ ++ P D +K +V+ A+W Q IL R +KE RH+ F LRI QV
Sbjct: 355 TCIEVSHFPQDNARFVKTRVNGGGITTCIATWFSQLCILLHRLLKERRHESFDLLRIFQV 414
Query: 518 LATAVILGLLWWQSDSKSPKGLEDQVHNLFCWSI 551
+A +++ GL+WW SD + + D++ LF SI
Sbjct: 415 VAASILCGLMWWHSDYRD---VHDRLGLLFFISI 445
|
|
| DICTYBASE|DDB_G0269214 abcG1 "ABC transporter G family protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 580 (209.2 bits), Expect = 3.8e-60, Sum P(2) = 3.8e-60
Identities = 123/301 (40%), Positives = 194/301 (64%)
Query: 123 DDDIPEDIEAGTRERPKFQTEPTLPIYLKFTDVTYKVIL--KGMTSSEEKDILNGITGSV 180
+++I ++ ++R F+ I F D+ + V + KG K IL I G +
Sbjct: 91 NNNIINNLNKKNKKRSTFKNR----IDFSFKDINHYVQITEKGKKKKISKQILTNINGHI 146
Query: 181 NPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSIT-Y-NDHPYSKSLKSKI-GFVTQD 237
G + A+MGPSG+GKTTLL++L+ RL + GS T Y N + ++ K+ G+VTQ
Sbjct: 147 ESGTIFAIMGPSGAGKTTLLDILAHRL---NINGSGTMYLNGNKSDFNIFKKLCGYVTQS 203
Query: 238 DVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIG--GSFVRG 295
D L P LTV+ETL + A L++P + ++K +R D+I+E+GL RC DT++G + +RG
Sbjct: 204 DSLMPSLTVRETLNFYAQLKMPRDVPLKEKLQRVQDIIDEMGLNRCADTLVGTADNKIRG 263
Query: 296 VSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQP 355
+SGGER+RV I E++ PS++ LDEPTSGLD++T+ ++ L+ +A++G+T++ TIHQP
Sbjct: 264 ISGGERRRVTISIELLTGPSVILLDEPTSGLDASTSFYVMSALKKLAKSGRTIICTIHQP 323
Query: 356 SSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIG--CSPQIAMNPAEFLLDLANGNLH 413
S ++ FD L+LLG G+ +Y+GKA++A+ YF++ G CS + NPA+F LDL N +
Sbjct: 324 RSNIYDMFDNLLLLGDGNTIYYGKANKALEYFNANGYHCSEKT--NPADFFLDLINTQVE 381
Query: 414 D 414
D
Sbjct: 382 D 382
|
|
| MGI|MGI:1347061 Abcg2 "ATP-binding cassette, sub-family G (WHITE), member 2" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 616 (221.9 bits), Expect = 3.9e-60, P = 3.9e-60
Identities = 145/383 (37%), Positives = 220/383 (57%)
Query: 150 LKFTDVTYKVILKG---MTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGR 206
L F +TY+V +K + + EK+IL+ I G + PG + A++GP+G GK++LL++L+ R
Sbjct: 37 LSFHHITYRVKVKSGFLVRKTVEKEILSDINGIMKPG-LNAILGPTGGGKSSLLDVLAAR 95
Query: 207 LMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQ 266
+ G + N P K G+V QDDV+ LTV+E L ++A LRLP T+ +
Sbjct: 96 KDPKGLSGDVLINGAPQPAHFKCCSGYVVQDDVVMGTLTVRENLQFSAALRLPTTMKNHE 155
Query: 267 KEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGL 326
K +R +I ELGLE+ D+ +G F+RG+SGGERKR IG E+I +PS+LFLDEPT+GL
Sbjct: 156 KNERINTIIKELGLEKVADSKVGTQFIRGISGGERKRTSIGMELITDPSILFLDEPTTGL 215
Query: 327 DSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAY 386
DS+TA ++ +L+ +++ G+T++ +IHQP +F FD L LL G L++ G A +A+ Y
Sbjct: 216 DSSTANAVLLLLKRMSKQGRTIIFSIHQPRYSIFKLFDSLTLLASGKLVFHGPAQKALEY 275
Query: 387 FSSIG--CSPQIAMNPAEFLLDLANGNLHDVSVPSELQDRVQTENSENDTANGKPTPAIV 444
F+S G C P NPA+F LD+ NG+ V + E QD + +E + KP V
Sbjct: 276 FASAGYHCEPY--NNPADFFLDVINGDSSAVMLNREEQDN-EANKTEEPSKGEKP----V 328
Query: 445 HEYLVEAYETRVAENEKKKLMAPIPLDEEIKAKVSSPKRNWGASWIQQYTILFRRGIKEH 504
E L E Y E K + +P +E K + + + S+ Q + RR K
Sbjct: 329 IENLSEFYINSAIYGETKAELDQLPGAQEKKGTSAFKEPVYVTSFCHQLRWIARRSFKNL 388
Query: 505 RHDYFSWLRITQVLATAVILGLL 527
+ + Q++ T VILGL+
Sbjct: 389 LGN--PQASVAQLIVT-VILGLI 408
|
|
| TAIR|locus:2173184 ABCG6 "ATP-binding cassette G6" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 584 (210.6 bits), Expect = 7.8e-60, Sum P(2) = 7.8e-60
Identities = 143/390 (36%), Positives = 222/390 (56%)
Query: 162 KGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDH 221
+G+ SS+ K +LNGITG GE+LA++G SGSGK+TL++ L+ R+ + ++ G++T N
Sbjct: 98 EGIFSSKTKTLLNGITGEARDGEILAVLGASGSGKSTLIDALANRIAKGSLKGNVTLNGE 157
Query: 222 PYSKSLKSKIG-FVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL 280
+ ++ I +V QDD+LFP LTV+ETL +AA RLP +L+K +K R +I++LGL
Sbjct: 158 VLNSKMQKAISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSLSKSKKSLRVQALIDQLGL 217
Query: 281 ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQD 340
+T+IG RG+SGGER+RV IG +II +P LLFLDEPTSGLDST+AL ++++L+
Sbjct: 218 RNAANTVIGDEGHRGISGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSALSVIKVLKR 277
Query: 341 IAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIGCSPQIAMNP 400
IA++G V+ T+HQPS RL D+L+ L +G ++ G + +F+ G N
Sbjct: 278 IAQSGSMVIMTLHQPSYRLLRLLDRLLFLSRGQTVFSGSPAMLPRFFAEFGHPIPEHENR 337
Query: 401 AEFLLDLAN---GNLHDVSVPSELQDRVQTENSENDTANGKPTPAIVHEYLVEAYETRVA 457
EF LDL G+ E + +E + G L EA ++
Sbjct: 338 TEFALDLIRELEGSAGGTRSLVEFNKGFRQRKAEPRSQTGLS--------LKEAISASIS 389
Query: 458 ENEKKKLM--APIPLDEEIKAKVSSPKRNWGASWIQQYTILFRRGIKEHRH--DYFSWLR 513
K KL+ A + VS+ W++ +L +R + R + F +R
Sbjct: 390 ---KGKLVSGATTTTHSSGSSPVSTIPTFANPFWVE-LAVLAKRSMTNSRRQPELFG-IR 444
Query: 514 ITQVLATAVILGLLWWQSDSKSPKGLEDQV 543
+ VL T IL ++WQ D+ SPKG+++++
Sbjct: 445 LGAVLVTGFILATMFWQLDN-SPKGVQERL 473
|
|
| UNIPROTKB|B2D1N9 ABCG2 "ATP-binding cassette sub-family G member 2" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 612 (220.5 bits), Expect = 1.0e-59, P = 1.0e-59
Identities = 151/408 (37%), Positives = 232/408 (56%)
Query: 150 LKFTDVTYKVILK-GMT---SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSG 205
L F ++ Y+V +K G + EK+IL I G + PG + A++GP+G GK++LL++L+
Sbjct: 39 LSFHNICYRVKVKTGFLLCRKTIEKEILANINGVMKPG-LNAILGPTGGGKSSLLDILAA 97
Query: 206 RLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQ 265
R + G + N P + K G+V QDDV+ LTV+E L ++A LRLP T+T
Sbjct: 98 RKDPHGLSGDVLINGAPRPANFKCNSGYVVQDDVVMGTLTVRENLQFSAALRLPTTMTSY 157
Query: 266 QKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSG 325
+K +R VI ELGL++ D+ +G F+RGVSGGERKR I E+I +PS+LFLDEPT+G
Sbjct: 158 EKNERINKVIQELGLDKVADSKVGTQFIRGVSGGERKRTSIAMELITDPSILFLDEPTTG 217
Query: 326 LDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385
LDS+TA ++ +L+ +++ G+T++ +IHQP +F FD L LL G L++ G A EA+
Sbjct: 218 LDSSTANAVLLLLKRMSKQGRTIIFSIHQPRYSIFKLFDSLTLLASGRLMFHGPAQEALG 277
Query: 386 YFSSIG--CSPQIAMNPAEFLLDLANGNLHDVSVPSELQDRVQTENSENDTANGKPTPAI 443
YF +IG C P NPA+F LD+ NG+ V + E D + E +E + + K TP I
Sbjct: 278 YFGAIGFRCEPY--NNPADFFLDIINGDSSAVVLNRE--D-IGDEANETEEPSKKDTPLI 332
Query: 444 VHEYLVEAYETRVAENEKKKLMAPIPLDEEIKAKVSSPKRNWGASWIQQYTILFRRGIKE 503
E L E Y E K + D+ K S + + S+ Q + RR K
Sbjct: 333 --EKLAEFYVNSSFFKETKVELDKFSGDQRRKKLPSYKEVTYATSFCHQLKWISRRSFKN 390
Query: 504 HRHDYFSWLRITQVLATA---VILGLLWWQSDSKS-PKGLEDQVHNLF 547
+ I Q++ T +++G +++ D K+ P G++++ LF
Sbjct: 391 LLGN--PQASIAQLIVTVFLGLVIGAIFY--DLKNDPAGIQNRAGVLF 434
|
|
| UNIPROTKB|Q4GZT4 ABCG2 "ATP-binding cassette sub-family G member 2" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 612 (220.5 bits), Expect = 1.0e-59, P = 1.0e-59
Identities = 151/408 (37%), Positives = 232/408 (56%)
Query: 150 LKFTDVTYKVILK-GMT---SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSG 205
L F ++ Y+V +K G + EK+IL I G + PG + A++GP+G GK++LL++L+
Sbjct: 36 LSFHNICYRVKVKTGFLLCRKTIEKEILANINGVMKPG-LNAILGPTGGGKSSLLDILAA 94
Query: 206 RLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQ 265
R + G + N P + K G+V QDDV+ LTV+E L ++A LRLP T+T
Sbjct: 95 RKDPHGLSGDVLINGAPRPANFKCNSGYVVQDDVVMGTLTVRENLQFSAALRLPTTMTSY 154
Query: 266 QKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSG 325
+K +R VI ELGL++ D+ +G F+RGVSGGERKR I E+I +PS+LFLDEPT+G
Sbjct: 155 EKNERINKVIQELGLDKVADSKVGTQFIRGVSGGERKRTSIAMELITDPSILFLDEPTTG 214
Query: 326 LDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385
LDS+TA ++ +L+ +++ G+T++ +IHQP +F FD L LL G L++ G A EA+
Sbjct: 215 LDSSTANAVLLLLKRMSKQGRTIIFSIHQPRYSIFKLFDSLTLLASGRLMFHGPAQEALG 274
Query: 386 YFSSIG--CSPQIAMNPAEFLLDLANGNLHDVSVPSELQDRVQTENSENDTANGKPTPAI 443
YF +IG C P NPA+F LD+ NG+ V + E D + E +E + + K TP I
Sbjct: 275 YFGAIGFRCEPY--NNPADFFLDIINGDSSAVVLNRE--D-IGDEANETEEPSKKDTPLI 329
Query: 444 VHEYLVEAYETRVAENEKKKLMAPIPLDEEIKAKVSSPKRNWGASWIQQYTILFRRGIKE 503
E L E Y E K + D+ K S + + S+ Q + RR K
Sbjct: 330 --EKLAEFYVNSSFFKETKVELDKFSGDQRRKKLPSYKEVTYATSFCHQLKWISRRSFKN 387
Query: 504 HRHDYFSWLRITQVLATA---VILGLLWWQSDSKS-PKGLEDQVHNLF 547
+ I Q++ T +++G +++ D K+ P G++++ LF
Sbjct: 388 LLGN--PQASIAQLIVTVFLGLVIGAIFY--DLKNDPAGIQNRAGVLF 431
|
|
| TAIR|locus:2092960 ABCG15 "ATP-binding cassette G15" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 612 (220.5 bits), Expect = 1.0e-59, P = 1.0e-59
Identities = 143/405 (35%), Positives = 229/405 (56%)
Query: 128 EDIEAGTRERPKFQTEPTLPIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLA 187
E +G R+ P + E + YL + D+T V++ + + +L + G PG ++A
Sbjct: 4 EGSSSGRRQLPS-KLEMSRGAYLAWEDLT--VVIPNFSDGPTRRLLQRLNGYAEPGRIMA 60
Query: 188 LMGPSGSGKTTLLNLLSGRLMEPTV-GGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTV 246
+MGPSGSGK+TLL+ L+GRL V G++ N ++ + +VTQ+DVL LTV
Sbjct: 61 IMGPSGSGKSTLLDSLAGRLARNVVMTGNLLLNGKK-ARLDYGLVAYVTQEDVLLGTLTV 119
Query: 247 KETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306
+ET+TY+A LRLP+ ++K++ I ELGL+ C D +IG RGVSGGERKRV I
Sbjct: 120 RETITYSAHLRLPSDMSKEEVSDIVEGTIMELGLQDCSDRVIGNWHARGVSGGERKRVSI 179
Query: 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKL 366
EI+ P +LFLDEPTSGLDS +A ++Q L++IA G+TV++++HQPSS +F FD L
Sbjct: 180 ALEILTRPQILFLDEPTSGLDSASAFFVIQALRNIARDGRTVISSVHQPSSEVFALFDDL 239
Query: 367 ILLGKGSLLYFGKASEAMAYFSSIGCSPQIAMNPAEFLLDLANGNLHDVSVPSELQDRVQ 426
LL G +YFG+A A+ +F+ G NP++ L N + V+ + R+Q
Sbjct: 240 FLLSSGESVYFGEAKSAVEFFAESGFPCPKKRNPSDHFLRCINSDFDTVTATLKGSQRIQ 299
Query: 427 TENSENDTANGKPTPAIVHEYLVEAYE-TRVAENEKKKLMAPIPLDE-EIKAKVSSPKRN 484
+ +D T +++ LVE Y+ ++ A++ K ++ ++ E++ + S +
Sbjct: 300 ETPATSDPLMNLAT-SVIKARLVENYKRSKYAKSAKSRIRELSNIEGLEMEIRKGS-EAT 357
Query: 485 WGASWIQQYTILFRRGIKEHRHDYFSWLRITQVLATAVILGLLWW 529
W W Q T+ R I R + W RI + ++ +G +++
Sbjct: 358 W---WKQLRTLTARSFINMCRDVGYYWTRIISYIVVSISVGTIFY 399
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q93YS4 | AB22G_ARATH | No assigned EC number | 0.7517 | 0.9733 | 0.7283 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 562 | |||
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 1e-135 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 2e-96 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 9e-84 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 5e-77 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 8e-63 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 4e-62 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 2e-61 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 3e-55 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 1e-51 | |
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 3e-48 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 1e-41 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 9e-41 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 1e-39 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 2e-37 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 6e-37 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 8e-37 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 1e-36 | |
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 1e-35 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 1e-35 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 2e-35 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 2e-35 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 6e-35 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 4e-34 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 6e-34 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 1e-33 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 1e-33 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 3e-32 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 5e-32 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 2e-31 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 2e-31 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 2e-31 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 3e-31 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 3e-31 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 5e-31 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 9e-31 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 1e-30 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 2e-30 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 2e-30 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 4e-30 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 4e-30 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 7e-30 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 8e-30 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 9e-30 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 1e-29 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 1e-29 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 2e-29 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 2e-29 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 2e-29 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 4e-29 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 7e-29 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 2e-28 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 7e-28 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 8e-28 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 1e-27 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 2e-27 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 2e-27 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 2e-27 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 3e-27 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 3e-27 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 5e-27 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 5e-27 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 7e-27 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 8e-27 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 1e-26 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 2e-26 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 2e-26 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 3e-26 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 4e-26 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 4e-26 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 6e-26 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 8e-26 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 8e-26 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 2e-25 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 3e-25 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 3e-25 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 5e-25 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 8e-25 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 1e-24 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 2e-24 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 2e-24 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 2e-24 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 2e-24 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 3e-24 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 3e-24 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 4e-24 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 7e-24 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 9e-24 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 9e-24 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 1e-23 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 1e-23 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 1e-23 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 1e-23 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 2e-23 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 2e-23 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 2e-23 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 3e-23 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 3e-23 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 4e-23 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 4e-23 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 4e-23 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 4e-23 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 5e-23 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 6e-23 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 6e-23 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 9e-23 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 9e-23 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 1e-22 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 2e-22 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 2e-22 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 2e-22 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 2e-22 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 3e-22 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 4e-22 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 5e-22 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 5e-22 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 6e-22 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 6e-22 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 7e-22 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 8e-22 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 8e-22 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 1e-21 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 1e-21 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 1e-21 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 2e-21 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 2e-21 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 3e-21 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 3e-21 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 4e-21 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 7e-21 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 7e-21 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 8e-21 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 8e-21 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 8e-21 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 9e-21 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 1e-20 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 1e-20 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 2e-20 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 2e-20 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 2e-20 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 2e-20 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 4e-20 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 4e-20 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 4e-20 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 5e-20 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 8e-20 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 9e-20 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 1e-19 | |
| PRK11144 | 352 | PRK11144, modC, molybdate transporter ATP-binding | 1e-19 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 2e-19 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 2e-19 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 2e-19 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 5e-19 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 7e-19 | |
| cd03215 | 182 | cd03215, ABC_Carb_Monos_II, Second domain of the A | 9e-19 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 1e-18 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 1e-18 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 1e-18 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 2e-18 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 2e-18 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 4e-18 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 5e-18 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 7e-18 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 9e-18 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 1e-17 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 1e-17 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 2e-17 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 2e-17 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 3e-17 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 3e-17 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 4e-17 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 4e-17 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 5e-17 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 5e-17 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 5e-17 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 5e-17 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 7e-17 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 1e-16 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 1e-16 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 1e-16 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 2e-16 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 2e-16 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 2e-16 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 2e-16 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 2e-16 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 2e-16 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 2e-16 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 2e-16 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 3e-16 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 3e-16 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 3e-16 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 4e-16 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 4e-16 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 5e-16 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 6e-16 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 6e-16 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 8e-16 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 1e-15 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 1e-15 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 2e-15 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 3e-15 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 3e-15 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 3e-15 | |
| PRK11650 | 356 | PRK11650, ugpC, glycerol-3-phosphate transporter A | 3e-15 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 3e-15 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 3e-15 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 3e-15 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 3e-15 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 3e-15 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 5e-15 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 5e-15 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 5e-15 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 5e-15 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 5e-15 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 5e-15 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 5e-15 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 5e-15 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 6e-15 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 7e-15 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 7e-15 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 1e-14 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 2e-14 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 2e-14 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 2e-14 | |
| CHL00131 | 252 | CHL00131, ycf16, sulfate ABC transporter protein; | 3e-14 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 3e-14 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 3e-14 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 4e-14 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 5e-14 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 6e-14 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 6e-14 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 7e-14 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 8e-14 | |
| PRK10744 | 260 | PRK10744, pstB, phosphate transporter ATP-binding | 9e-14 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 9e-14 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 9e-14 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 1e-13 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 1e-13 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 1e-13 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 1e-13 | |
| COG4778 | 235 | COG4778, PhnL, ABC-type phosphonate transport syst | 1e-13 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 1e-13 | |
| PRK09580 | 248 | PRK09580, sufC, cysteine desulfurase ATPase compon | 1e-13 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 1e-13 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 1e-13 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 2e-13 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 2e-13 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 3e-13 | |
| PRK11300 | 255 | PRK11300, livG, leucine/isoleucine/valine transpor | 4e-13 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 4e-13 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 5e-13 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 5e-13 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 5e-13 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 5e-13 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 6e-13 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 1e-12 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 1e-12 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 1e-12 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 1e-12 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 2e-12 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 2e-12 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 3e-12 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 3e-12 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 3e-12 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 3e-12 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 3e-12 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 4e-12 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 4e-12 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 4e-12 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 5e-12 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 6e-12 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 6e-12 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 7e-12 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 9e-12 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 9e-12 | |
| PRK14243 | 264 | PRK14243, PRK14243, phosphate transporter ATP-bind | 9e-12 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 1e-11 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 1e-11 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 1e-11 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 2e-11 | |
| PRK14248 | 268 | PRK14248, PRK14248, phosphate ABC transporter ATP- | 2e-11 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 5e-11 | |
| PRK11831 | 269 | PRK11831, PRK11831, putative ABC transporter ATP-b | 7e-11 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 9e-11 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 1e-10 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 1e-10 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 1e-10 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 1e-10 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 2e-10 | |
| PRK11247 | 257 | PRK11247, ssuB, aliphatic sulfonates transport ATP | 2e-10 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 2e-10 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 3e-10 | |
| PRK09473 | 330 | PRK09473, oppD, oligopeptide transporter ATP-bindi | 3e-10 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 3e-10 | |
| PRK14265 | 274 | PRK14265, PRK14265, phosphate ABC transporter ATP- | 4e-10 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 4e-10 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 6e-10 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 7e-10 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 8e-10 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 9e-10 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 1e-09 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 1e-09 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 1e-09 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 1e-09 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 2e-09 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 2e-09 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 2e-09 | |
| TIGR03415 | 382 | TIGR03415, ABC_choXWV_ATP, choline ABC transporter | 2e-09 | |
| cd03236 | 255 | cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin | 3e-09 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 4e-09 | |
| PRK10938 | 490 | PRK10938, PRK10938, putative molybdenum transport | 5e-09 | |
| PRK11022 | 326 | PRK11022, dppD, dipeptide transporter ATP-binding | 7e-09 | |
| COG2401 | 593 | COG2401, COG2401, ABC-type ATPase fused to a predi | 9e-09 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 9e-09 | |
| cd03291 | 282 | cd03291, ABCC_CFTR1, ATP-binding cassette domain o | 1e-08 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 2e-08 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 2e-08 | |
| PRK10636 | 638 | PRK10636, PRK10636, putative ABC transporter ATP-b | 2e-08 | |
| COG4170 | 330 | COG4170, SapD, ABC-type antimicrobial peptide tran | 3e-08 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 5e-08 | |
| PRK15064 | 530 | PRK15064, PRK15064, ABC transporter ATP-binding pr | 9e-08 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 9e-08 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 9e-08 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 1e-07 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 2e-07 | |
| cd03288 | 257 | cd03288, ABCC_SUR2, ATP-binding cassette domain 2 | 2e-07 | |
| PRK13633 | 280 | PRK13633, PRK13633, cobalt transporter ATP-binding | 2e-07 | |
| PRK13645 | 289 | PRK13645, cbiO, cobalt transporter ATP-binding sub | 2e-07 | |
| PRK13540 | 200 | PRK13540, PRK13540, cytochrome c biogenesis protei | 2e-07 | |
| PRK10636 | 638 | PRK10636, PRK10636, putative ABC transporter ATP-b | 3e-07 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 3e-07 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 4e-07 | |
| PRK15079 | 331 | PRK15079, PRK15079, oligopeptide ABC transporter A | 6e-07 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 1e-06 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 1e-06 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 1e-06 | |
| cd03289 | 275 | cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 | 2e-06 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 3e-06 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 3e-06 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 3e-06 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 4e-06 | |
| PRK13546 | 264 | PRK13546, PRK13546, teichoic acids export protein | 4e-06 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 4e-06 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 8e-06 | |
| PRK13545 | 549 | PRK13545, tagH, teichoic acids export protein ATP- | 8e-06 | |
| PRK14263 | 261 | PRK14263, PRK14263, phosphate ABC transporter ATP- | 1e-05 | |
| cd03238 | 176 | cd03238, ABC_UvrA, ATP-binding cassette domain of | 1e-05 | |
| PRK10418 | 254 | PRK10418, nikD, nickel transporter ATP-binding pro | 1e-05 | |
| COG4615 | 546 | COG4615, PvdE, ABC-type siderophore export system, | 2e-05 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 4e-05 | |
| TIGR01194 | 555 | TIGR01194, cyc_pep_trnsptr, cyclic peptide transpo | 6e-05 | |
| cd03227 | 162 | cd03227, ABC_Class2, ATP-binding cassette domain o | 7e-05 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 8e-05 | |
| PRK15093 | 330 | PRK15093, PRK15093, antimicrobial peptide ABC tran | 2e-04 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 3e-04 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 3e-04 | |
| cd01854 | 211 | cd01854, YjeQ_EngC, Ribosomal interacting GTPase Y | 0.001 | |
| pfam03193 | 161 | pfam03193, DUF258, Protein of unknown function, DU | 0.001 | |
| pfam13304 | 256 | pfam13304, AAA_21, AAA domain | 0.001 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 0.002 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 0.002 | |
| cd03271 | 261 | cd03271, ABC_UvrA_II, ATP-binding cassette domain | 0.002 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 0.003 | |
| PLN03073 | 718 | PLN03073, PLN03073, ABC transporter F family; Prov | 0.003 | |
| cd03222 | 177 | cd03222, ABC_RNaseL_inhibitor, ATP-binding cassett | 0.003 | |
| PRK01889 | 356 | PRK01889, PRK01889, GTPase RsgA; Reviewed | 0.003 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 0.004 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 407 bits (1048), Expect = e-135
Identities = 204/475 (42%), Positives = 285/475 (60%), Gaps = 59/475 (12%)
Query: 105 FTGFTMPPDEIADSKPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLKFTDVTYKVILKGM 164
F G D SKP S D +R+ P PI LKF DV Y+V + M
Sbjct: 4 FDGVENQNDGPDRSKPPSQD---------SRDLPSLLLSSCYPITLKFMDVCYRVKFENM 54
Query: 165 TSS---------------------EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLL 203
+ +E+ ILNG+TG +PGE+LA++GPSGSGK+TLLN L
Sbjct: 55 KNKGSNIKRILGHKPKISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNAL 114
Query: 204 SGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLT 263
+GR+ G+I N+ +K + + GFVTQDD+L+PHLTV+ETL + +LLRLP +LT
Sbjct: 115 AGRIQGNNFTGTILANNRKPTKQILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLT 174
Query: 264 KQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPT 323
KQ+K A VI+ELGL +C++T+IG SF+RG+SGGERKRV I +E++INPSLL LDEPT
Sbjct: 175 KQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPT 234
Query: 324 SGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383
SGLD+T A R+V L +A+ GKT+VT++HQPSSR++ FD +++L +G L+FGK S+A
Sbjct: 235 SGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDA 294
Query: 384 MAYFSSIGCSPQIAMNPAEFLLDLANGNLHDVSVPSELQDRVQTENSENDTANGKPTPAI 443
MAYF S+G SP MNPA+FLLDLANG V SE + N
Sbjct: 295 MAYFESVGFSPSFPMNPADFLLDLANGVCQTDGV------------SEREKPN------- 335
Query: 444 VHEYLVEAYETRVAENEKKKL-MAPIPLDEEIKAKVSSPKRNWG------ASWIQQYTIL 496
V + LV +Y T +A K + M+ P +S K + ++W Q++IL
Sbjct: 336 VKQSLVASYNTLLAPKVKAAIEMSHFPQANARFVGSASTKEHRSSDRISISTWFNQFSIL 395
Query: 497 FRRGIKEHRHDYFSWLRITQVLATAVILGLLWWQSDSKSPKGLEDQVHNLFCWSI 551
+R +KE +H+ F+ LR+ QV+A A++ GL+WW SD + ++D++ LF SI
Sbjct: 396 LQRSLKERKHESFNTLRVFQVIAAALLAGLMWWHSDFRD---VQDRLGLLFFISI 447
|
Length = 659 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 306 bits (785), Expect = 2e-96
Identities = 132/381 (34%), Positives = 202/381 (53%), Gaps = 34/381 (8%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP-TVGGSITYNDHPYSKSL 227
K +L ++G PGE+LA+MG SG+GKTTL+N L+ R + GS+ N P
Sbjct: 37 RKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKE 96
Query: 228 KSKI-GFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDT 286
I +V QDD+ P LTV+E L + A LR+P +TK++K +R +V+ LGL +C +T
Sbjct: 97 MRAISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANT 156
Query: 287 MIG-GSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAG 345
IG V+G+SGGERKR+ +E++ +P LLF DEPTSGLDS A +VQ+L+ +A+ G
Sbjct: 157 RIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKG 216
Query: 346 KTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIG--CSPQIAMNPAEF 403
KT++ TIHQPSS LF FDK+IL+ +G + Y G +A+ +FS +G C NPA+F
Sbjct: 217 KTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVPFFSDLGHPCPE--NYNPADF 274
Query: 404 LLDLANGNLHDVSVPSELQDRVQTENSENDTANGKPTPAIVHEYLVEAY--ETRVAENEK 461
+ + +P +EN + I + V + V N
Sbjct: 275 YVQVLAV------IPG-------SENESRERIEK-----ICDSFAVSDIGRDMLVNTNLW 316
Query: 462 KKLMAPIPLDEEIKAKVSSPKRNWGASWIQQYTILFRRGIKEHRHDYFS-WLRITQVLAT 520
+ D E + + ASW Q+ L +R D +R+ Q + T
Sbjct: 317 SGKAGGLVKDSE-----NMEGIGYNASWWTQFYALLKRSWLSVLRDPLLLKVRLIQTMMT 371
Query: 521 AVILGLLWWQSDSKSPKGLED 541
A+++GL++ + KG+++
Sbjct: 372 AILIGLIYLGQGL-TQKGVQN 391
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 258 bits (662), Expect = 9e-84
Identities = 100/233 (42%), Positives = 139/233 (59%), Gaps = 40/233 (17%)
Query: 147 PIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGR 206
+ L F ++T V K S K +L ++G PGE+ A+MGPSG+GK+TLLN L+GR
Sbjct: 1 GVTLSFRNLTVTV--KSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGR 58
Query: 207 LMEPTVGGSITYNDHP-YSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQ 265
V G + N P +S + IG+V QDD+L P LTV+ETL +AA LR
Sbjct: 59 RTGLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLR-------- 110
Query: 266 QKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSG 325
G+SGGERKRV I E++ NPSLLFLDEPTSG
Sbjct: 111 -----------------------------GLSGGERKRVSIALELVSNPSLLFLDEPTSG 141
Query: 326 LDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378
LDS++AL+++ +L+ +A+ G+T++ +IHQPSS +F FDKL+LL +G ++YFG
Sbjct: 142 LDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 242 bits (620), Expect = 5e-77
Identities = 97/212 (45%), Positives = 134/212 (63%), Gaps = 6/212 (2%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-PTVGGSITYNDHPYSKSL 227
ILN ++ V G+V+A++G SGSGKTTLL+ +SGR+ T G I +N P
Sbjct: 19 YARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQ 78
Query: 228 -KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDT 286
+ + +V QDD+L P LTV+ETLTY A+LRLP + ++KR DV L T
Sbjct: 79 FQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDV----LLRDLALT 134
Query: 287 MIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGK 346
IGG+ V+G+SGGER+RV I +++ +P +L LDEPTSGLDS TAL +V L +A +
Sbjct: 135 RIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNR 194
Query: 347 TVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378
V+ TIHQP S LF FD+++LL G ++Y G
Sbjct: 195 IVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 204 bits (521), Expect = 8e-63
Identities = 92/233 (39%), Positives = 132/233 (56%), Gaps = 42/233 (18%)
Query: 147 PIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGR 206
L + ++ Y V +KG ++ +LN I+G V PG + ALMG SG+GKTTLL++L+GR
Sbjct: 1 GSVLTWKNLNYTVPVKG----GKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGR 56
Query: 207 LMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQ 266
+ G I N P K+ + G+V Q DV P+LTV+E L ++ALLR
Sbjct: 57 KTAGVITGEILINGRPLDKNFQRSTGYVEQQDVHSPNLTVREALRFSALLR--------- 107
Query: 267 KEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGL 326
G+S +RKR+ IG E+ PS+LFLDEPTSGL
Sbjct: 108 ----------------------------GLSVEQRKRLTIGVELAAKPSILFLDEPTSGL 139
Query: 327 DSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK-GSLLYFG 378
DS A IV+ L+ +A++G+ ++ TIHQPS+ +F KFD+L+LL + G +YFG
Sbjct: 140 DSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 221 bits (565), Expect = 4e-62
Identities = 135/417 (32%), Positives = 215/417 (51%), Gaps = 69/417 (16%)
Query: 154 DVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVG 213
++TY+V +K E++ ILN + G V PG + ALMG SG+GKTTLLN+L+ R+ T G
Sbjct: 764 NLTYEVKIKK----EKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERV---TTG 816
Query: 214 ----GSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEK 269
G N P S + IG+V Q D+ P TV+E+L ++A LR P +++K +K +
Sbjct: 817 VITGGDRLVNGRPLDSSFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKME 876
Query: 270 RAIDVINELGLERCQDTMIG--GSFVRGVSGGERKRVCIGNEIIINP-SLLFLDEPTSGL 326
+VI L +E D ++G G G++ +RKR+ IG E++ P LLFLDEPTSGL
Sbjct: 877 YVEEVIKLLEMESYADAVVGVPGE---GLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGL 933
Query: 327 DSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGS-LLYF---GKASE 382
DS TA I ++++ +A+ G+ ++ TIHQPS+ LF +FD+L+LL KG +YF G+ S
Sbjct: 934 DSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGENSH 993
Query: 383 AM-AYFSSIGCS--PQIAMNPAEFLLDL--------ANGNLHDVSVPSELQDRVQTENSE 431
+ YF G P+ A NPAE++L++ AN + H+V S V+
Sbjct: 994 TIINYFEKHGAPKCPEDA-NPAEWMLEVIGAAPGAHANQDYHEVWRNSSEYQAVK----- 1047
Query: 432 NDTANGKPTPAIVHEYLVEAYETRVAENEKKKLMAPIPLDEEIKAKVSSPKRNWGASWIQ 491
NE +L A + E+ + AS
Sbjct: 1048 ---------------------------NELDRLEAELSKAEDDND--PDALSKYAASLWY 1078
Query: 492 QY-TILFRRGIKEHRHDYFSWLRITQVLATAVILGLLWWQSDSKSPKGLEDQVHNLF 547
Q+ +L+R + R + + + + A+ +G +++ S +GL++Q+ +F
Sbjct: 1079 QFKLVLWRTFQQYWRTPDYLYSKFFLTIFAALFIGFTFFKVG-TSLQGLQNQMFAVF 1134
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 204 bits (521), Expect = 2e-61
Identities = 78/227 (34%), Positives = 129/227 (56%), Gaps = 15/227 (6%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225
+K L+G++ V PGE+ L+GP+G+GKTTLL +L+G L++PT G I + K
Sbjct: 17 DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAG-LLKPT-SGEILVLGYDVVKEPA 74
Query: 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQD 285
++ +IG+V Q+ L+P LTV+E L + A L L+K++ E+R +++ GLE +
Sbjct: 75 KVRRRIGYVPQEPSLYPELTVRENLEFFARLY---GLSKEEAEERIEELLELFGLEDKAN 131
Query: 286 TMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAG 345
VR +SGG ++R+ I ++ +P LL LDEPTSGLD + I ++L+++A+ G
Sbjct: 132 K-----KVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEG 186
Query: 346 K-TVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIG 391
T++ + H D++I+L G ++ G E F G
Sbjct: 187 GVTILLSTHILEE-AEELCDRVIILNDGKIIAEGTPEELKEKFGGKG 232
|
Length = 293 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 201 bits (513), Expect = 3e-55
Identities = 115/402 (28%), Positives = 176/402 (43%), Gaps = 32/402 (7%)
Query: 144 PTLP-IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNL 202
PT P LK ++ LK ++ DIL + G + PGE+ ++G GSG +TLL
Sbjct: 48 PTFPNALLKILTRGFR-KLKKFRDTKTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKT 106
Query: 203 LSGRL--MEPTVGGSITYNDHP---YSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLR 257
++ V G ITY+ K + + + + DV FPHLTV ETL +AA +
Sbjct: 107 IASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETLDFAARCK 166
Query: 258 LPNT----LTKQQKEKRAIDVI-NELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIII 312
P +++++ K DV GL ++T +G FVRGVSGGERKRV I +
Sbjct: 167 TPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLG 226
Query: 313 NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVT-TIHQPSSRLFHKFDKLILLGK 371
+ D T GLDS TAL ++ L+ A T I+Q S + FDK+I+L +
Sbjct: 227 GAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYE 286
Query: 372 GSLLYFGKASEAMAYFSSIG--CSPQIAMNPAEFLLDLANGNLHDVSVPSELQDRVQTEN 429
G +YFG A +A YF +G C + A+FL L + + E +V
Sbjct: 287 GYQIYFGPADKAKQYFEKMGFKCPDRQTT--ADFLTSLTSPAERQIKPGYE--KKVPRTP 342
Query: 430 SENDT-----ANGKPTPAIVHEYLVEAYETRVAENEKKKLMAPIPLDEEIKAKVSSPKRN 484
E +T + EYL E+ E ++ +A ++K + P
Sbjct: 343 QEFETYWRNSPEYAQLMKEIDEYLDRCSESDTKEAYRESHVAK-------QSKRTRPSSP 395
Query: 485 WGASWIQQYTILFRRGIKEHRHDYFSWL-RITQVLATAVILG 525
+ S+ Q R + + L + + A+IL
Sbjct: 396 YTVSFSMQVKYCLARNFLRMKGNPSFTLFMVFGNIIMALILS 437
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 175 bits (445), Expect = 1e-51
Identities = 75/215 (34%), Positives = 116/215 (53%), Gaps = 36/215 (16%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP-TVGGSITYNDHPY---S 224
+ IL +G V PGE++ ++G GSG +TLL L+ R +V G I YN PY +
Sbjct: 19 KIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFA 78
Query: 225 KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQ 284
+ +I +V+++DV FP LTV+ETL +A RC+
Sbjct: 79 EKYPGEIIYVSEEDVHFPTLTVRETLDFAL---------------------------RCK 111
Query: 285 DTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA 344
G FVRG+SGGERKRV I ++ S+L D T GLDS+TAL I++ ++ +A+
Sbjct: 112 ----GNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADV 167
Query: 345 -GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378
T +++Q S ++ FDK+++L +G +Y+G
Sbjct: 168 LKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 180 bits (459), Expect = 3e-48
Identities = 120/405 (29%), Positives = 219/405 (54%), Gaps = 41/405 (10%)
Query: 144 PTLPIYLKFTDVTYKVIL----KGMTSSEEK-DILNGITGSVNPGEVLALMGPSGSGKTT 198
P P+ + F DV Y V + K +E++ +L +TG+ PG + ALMG SG+GKTT
Sbjct: 862 PFTPLAMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTT 921
Query: 199 LLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKI-GFVTQDDVLFPHLTVKETLTYAALLR 257
L+++L+GR + G I + P + ++I G+ Q+D+ P +TV+E+L Y+A LR
Sbjct: 922 LMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLR 981
Query: 258 LPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLL 317
LP ++K++K +V+ + L+ +D ++G V G+S +RKR+ I E++ NPS++
Sbjct: 982 LPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSII 1041
Query: 318 FLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK-GSLLY 376
F+DEPTSGLD+ A +++ +++ + G+TVV TIHQPS +F FD+L+L+ + G ++Y
Sbjct: 1042 FMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIY 1101
Query: 377 FG----KASEAMAYFSSIGCSPQIA--MNPAEFLLDLANGNLHDVSVPSELQDRVQTENS 430
G + + + YF +I P+I NPA ++L+++ S+ +E++ +
Sbjct: 1102 SGPLGRNSHKIIEYFEAIPGVPKIKEKYNPATWMLEVS-------SLAAEVKLGIDFAEH 1154
Query: 431 ENDTANGKPTPAIVHEYLVEAYETRVAENEKKKLMAPIPLDEEIKAKVSSPKRNWGASWI 490
++ + A+V K+L P P ++ + WG
Sbjct: 1155 YKSSSLYQRNKALV-----------------KELSTPPPGASDLYFATQYSQSTWG---- 1193
Query: 491 QQYTILFRRGIKEHRHDYFSWLRITQVLATAVILGLLWWQSDSKS 535
Q + L+++ R ++ +R LA A+++G ++W+ +K
Sbjct: 1194 QFKSCLWKQWWTYWRSPDYNLVRFFFTLAAALMVGTIFWKVGTKR 1238
|
Length = 1470 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 148 bits (377), Expect = 1e-41
Identities = 75/217 (34%), Positives = 118/217 (54%), Gaps = 22/217 (10%)
Query: 168 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227
E+ + L + + GE +A++GPSGSGK+TLLNLL G L +PT G + N +K L
Sbjct: 16 EKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGG-LDKPT-SGEVLINGKDLTK-L 72
Query: 228 KSK---------IGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINEL 278
K IGFV Q+ L P LTV E + L+ + ++++ A +++ L
Sbjct: 73 SEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAG---KSAGRRKRAAEELLEVL 129
Query: 279 GLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQML 338
GLE D ++ +SGG+++RV I +I NP ++ DEPT LDS TA ++++L
Sbjct: 130 GLE---DRLL-KKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELL 185
Query: 339 QDIA-EAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374
+++ E GKT++ H P L D++I L G +
Sbjct: 186 RELNKERGKTIIMVTHDP--ELAKYADRVIELKDGKI 220
|
Length = 226 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 146 bits (371), Expect = 9e-41
Identities = 71/217 (32%), Positives = 114/217 (52%), Gaps = 21/217 (9%)
Query: 167 SEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS 226
E+ L G++ S+ GE +A++GPSGSGK+TLLN+L G L PT G + + SK
Sbjct: 14 GEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGG-LDRPT-SGEVRVDGTDISKL 71
Query: 227 --------LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINEL 278
+ IGFV Q L P LT E + LL + K+++ +RA +++ +
Sbjct: 72 SEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLA---GVPKKERRERAEELLERV 128
Query: 279 GLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQML 338
GL + + +SGG+++RV I + +P ++ DEPT LDS T ++++L
Sbjct: 129 GLGDRLNH-----YPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELL 183
Query: 339 QDIA-EAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374
+++ EAG T+V H P L D++I L G +
Sbjct: 184 RELNKEAGTTIVVVTHDP--ELAEYADRIIELRDGKI 218
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 143 bits (362), Expect = 1e-39
Identities = 72/224 (32%), Positives = 117/224 (52%), Gaps = 15/224 (6%)
Query: 159 VILKGMT-SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSIT 217
+ LKG++ + L+ ++ +V PGE LAL+GPSG GKTTLL L++G L P G I
Sbjct: 1 LELKGLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAG-LERPD-SGEIL 58
Query: 218 YNDHPYSKSLKSK--IGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVI 275
+ + + IG V QD LFPHLTV E + + L+L + K + R +++
Sbjct: 59 IDGRDVTGVPPERRNIGMVFQDYALFPHLTVAENIAFG--LKL-RGVPKAEIRARVRELL 115
Query: 276 NELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIV 335
+GLE + + +SGG+++RV + + PSLL LDEP S LD+ +
Sbjct: 116 ELVGLEG-----LLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELR 170
Query: 336 QMLQDI-AEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378
+ L+++ E G T + H L D++ ++ +G ++ G
Sbjct: 171 EELKELQRELGITTIYVTHDQEEALALA-DRIAVMNEGRIVQVG 213
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 138 bits (350), Expect = 2e-37
Identities = 68/242 (28%), Positives = 118/242 (48%), Gaps = 21/242 (8%)
Query: 147 PIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGR 206
++ ++T + +L I+ SV GE+ AL+GP+G+GK+TLL + G
Sbjct: 2 MPMIEVENLTVSY--------GNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGL 53
Query: 207 LMEPTVGGSITYNDHPYSKSLKSKIGFVTQD---DVLFPHLTVKETLTYAALLRLPNTLT 263
L P+ G + + + +IG+V Q D FP +TVK+ + +
Sbjct: 54 LK-PSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFP-ITVKDVVLLGRYGKKGWFRR 111
Query: 264 KQQKEKRAID-VINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEP 322
+K+K +D + +G+E +D IG +SGG+++RV + + NP LL LDEP
Sbjct: 112 LNKKDKEKVDEALERVGMEDLRDRQIGE-----LSGGQKQRVLLARALAQNPDLLLLDEP 166
Query: 323 TSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382
+G+D I +L+++ + GKTV+ H + FD++I L + L+ G E
Sbjct: 167 FTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGL-VMAYFDRVICLNRH-LIASGPPEE 224
Query: 383 AM 384
+
Sbjct: 225 VL 226
|
Length = 254 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 134 bits (341), Expect = 6e-37
Identities = 56/211 (26%), Positives = 99/211 (46%), Gaps = 54/211 (25%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225
+K L+ I+ +V GE+ L+GP+G+GKTTL+ ++ G L++P G I K
Sbjct: 12 KKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILG-LLKPD-SGEIKVLGKDIKKEPE 69
Query: 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQD 285
+K +IG++ ++ L+ +LTV+E L
Sbjct: 70 EVKRRIGYLPEEPSLYENLTVRENLKL--------------------------------- 96
Query: 286 TMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAG 345
SGG ++R+ + ++ +P LL LDEPTSGLD + ++L+++ + G
Sbjct: 97 -----------SGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEG 145
Query: 346 KTVVTTIHQPS--SRLFHKFDKLILLGKGSL 374
KT++ + H RL D++ +L G +
Sbjct: 146 KTILLSSHILEEAERL---CDRVAILNNGRI 173
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 135 bits (343), Expect = 8e-37
Identities = 57/185 (30%), Positives = 101/185 (54%), Gaps = 14/185 (7%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSIT---YNDHPYSKSLK 228
++ ++ +V GE+ L+G +G+GKTT L +L+G L PT G+ Y+ K+ +
Sbjct: 17 AVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGEL-RPT-SGTAYINGYSIRTDRKAAR 74
Query: 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMI 288
+G+ Q D LF LTV+E L + A L+ L K + ++ ++ LGL +
Sbjct: 75 QSLGYCPQFDALFDELTVREHLRFYARLK---GLPKSEIKEEVELLLRVLGLTDKANK-- 129
Query: 289 GGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTV 348
R +SGG ++++ + +I PS+L LDEPTSGLD + I ++ ++ + G+++
Sbjct: 130 ---RARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK-GRSI 185
Query: 349 VTTIH 353
+ T H
Sbjct: 186 ILTTH 190
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 134 bits (341), Expect = 1e-36
Identities = 64/227 (28%), Positives = 117/227 (51%), Gaps = 22/227 (9%)
Query: 151 KFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP 210
+ ++++ + L+ I+ ++ GE + ++GP+GSGK+TLL LL+G L P
Sbjct: 1 ELKNLSFSY------PDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLL-GP 53
Query: 211 TVGGSITYNDHPYSKS----LKSKIGFVTQD-DVLFPHLTVKETLTYAALLRLPNTLTKQ 265
T G + + +K L+ K+G V Q+ D F TV+E + + L ++
Sbjct: 54 T-SGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENL---GLPEE 109
Query: 266 QKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSG 325
+ E+R + + +GLE +D +SGG+++RV I + ++P +L LDEPT+G
Sbjct: 110 EIEERVEEALELVGLEGLRDRSP-----FTLSGGQKQRVAIAGVLAMDPDILLLDEPTAG 164
Query: 326 LDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKG 372
LD ++++L+ + GKT++ H L D++I+L G
Sbjct: 165 LDPAGRRELLELLKKLKAEGKTIIIVTHDL-DLLLELADRVIVLEDG 210
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 142 bits (360), Expect = 1e-35
Identities = 90/258 (34%), Positives = 146/258 (56%), Gaps = 42/258 (16%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPT--VGGSITYNDHPYSKSLKS 229
IL +G + P + L+GP SGKTTLL L+G+L +P+ V G ITYN + ++ +
Sbjct: 180 ILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKL-DPSLKVSGEITYNGYRLNEFVPR 238
Query: 230 KI-GFVTQDDVLFPHLTVKETLTYAALLR-------LPNTLTKQQKE-----KRAIDVIN 276
K +++Q+DV +TVKETL ++A + L + L +++K+ + +D+
Sbjct: 239 KTSAYISQNDVHVGVMTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFM 298
Query: 277 E-------------------LGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPS-L 316
+ LGL+ C+DT++G +RG+SGG++KRV G E+I+ P+
Sbjct: 299 KATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTG-EMIVGPTKT 357
Query: 317 LFLDEPTSGLDSTTALRIVQMLQDI---AEAGKTVVTTIHQPSSRLFHKFDKLILLGKGS 373
LF+DE ++GLDS+T +IV+ LQ I EA TV+ ++ QP+ F FD +ILL +G
Sbjct: 358 LFMDEISTGLDSSTTYQIVKCLQQIVHLTEA--TVLMSLLQPAPETFDLFDDIILLSEGQ 415
Query: 374 LLYFGKASEAMAYFSSIG 391
++Y G + +F S G
Sbjct: 416 IVYQGPRDHILEFFESCG 433
|
Length = 1470 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 133 bits (338), Expect = 1e-35
Identities = 71/223 (31%), Positives = 110/223 (49%), Gaps = 16/223 (7%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPY----S 224
K IL+ ++ S+ GE+ ++GP+GSGK+TLL L+G L++P G + +
Sbjct: 14 GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAG-LLKPK-SGEVLLDGKDIASLSP 71
Query: 225 KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQ 284
K L K+ +V Q LTV E L R P+ + K +++ E LE
Sbjct: 72 KELAKKLAYVPQSPSAPFGLTVYE---LVLLGRYPHLGLFGRPSKEDEEIVEEA-LELLG 127
Query: 285 DTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA-E 343
+ V +SGGER+RV I + +L LDEPTS LD + ++++L+D+ E
Sbjct: 128 LEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNRE 187
Query: 344 AGKTVVTTIHQP--SSRLFHKFDKLILLGKGSLLYFGKASEAM 384
G TVV +H ++R D LILL G ++ G E +
Sbjct: 188 KGLTVVMVLHDLNLAAR---YADHLILLKDGKIVAQGTPEEVL 227
|
Length = 258 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 130 bits (329), Expect = 2e-35
Identities = 67/227 (29%), Positives = 105/227 (46%), Gaps = 61/227 (26%)
Query: 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME 209
++F +V++ K +L ++ ++ PGE +A++GPSGSGK+TLL LL RL +
Sbjct: 1 IEFKNVSFS------YPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLL-RLYD 53
Query: 210 PTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQ 265
PT G I + SL+ I +V QD LF T++E N L
Sbjct: 54 PT-SGEILIDGVDLRDLDLESLRKNIAYVPQDPFLF-SGTIRE-----------NIL--- 97
Query: 266 QKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSG 325
SGG+R+R+ I ++ +P +L LDE TS
Sbjct: 98 -------------------------------SGGQRQRIAIARALLRDPPILILDEATSA 126
Query: 326 LDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKG 372
LD T I++ L+ +A+ GKTV+ H+ S+ D++I+L G
Sbjct: 127 LDPETEALILEALRALAK-GKTVIVIAHRLST--IRDADRIIVLDDG 170
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 130 bits (329), Expect = 2e-35
Identities = 65/211 (30%), Positives = 99/211 (46%), Gaps = 52/211 (24%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP------ 222
+K +LN ++ ++ GE++AL+GPSGSGK+TLL ++G L EP GSI +
Sbjct: 12 QKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAG-LEEPD-SGSILIDGEDLTDLED 69
Query: 223 YSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER 282
L+ +IG V QD LFPHLTV E +
Sbjct: 70 ELPPLRRRIGMVFQDFALFPHLTVLENIAL------------------------------ 99
Query: 283 CQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI- 341
G+SGG+++RV + + ++P +L LDEPTS LD T + +L+ +
Sbjct: 100 ------------GLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQ 147
Query: 342 AEAGKTVVTTIHQPSSRLFHKFDKLILLGKG 372
A+ G TVV H D++++L G
Sbjct: 148 AQLGITVVLVTHDLDE-AARLADRVVVLRDG 177
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 131 bits (331), Expect = 6e-35
Identities = 70/234 (29%), Positives = 118/234 (50%), Gaps = 19/234 (8%)
Query: 161 LKGMTSS-EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYN 219
L+G+T S + +L G+ V GE+LA++GPSGSGK+TLL L+ G L+ P G + +
Sbjct: 3 LRGLTKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVG-LLRPD-SGEVLID 60
Query: 220 DHPYSK-------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAI 272
S L+ ++G + Q LF LTV E + A LR L++++ + +
Sbjct: 61 GEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENV--AFPLREHTRLSEEEIREIVL 118
Query: 273 DVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTAL 332
+ + +GL +D +SGG +KRV + + ++P LL DEPT+GLD +
Sbjct: 119 EKLEAVGLRGAEDLYPAE-----LSGGMKKRVALARALALDPELLLYDEPTAGLDPIASG 173
Query: 333 RIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385
I +++ + + G T + H + F D++ +L G ++ G E A
Sbjct: 174 VIDDLIRSLKKELGLTSIMVTHDLDT-AFAIADRIAVLYDGKIVAEGTPEELRA 226
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 128 bits (324), Expect = 4e-34
Identities = 62/186 (33%), Positives = 98/186 (52%), Gaps = 12/186 (6%)
Query: 165 TSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS 224
L I+ SV GE +AL+GPSG GK+TLL +++G L PT G + + P
Sbjct: 12 GGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAG-LERPT-SGEVLVDGEP-V 68
Query: 225 KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQ 284
G+V Q D L P LTV + + L+ + K + +RA +++ +GL +
Sbjct: 69 TGPGPDRGYVFQQDALLPWLTVLDNVALGLELQG---VPKAEARERAEELLELVGLSGFE 125
Query: 285 DTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI-AE 343
+ ++ +SGG R+RV + + ++P +L LDEP S LD+ T ++ + L DI E
Sbjct: 126 N-----AYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRE 180
Query: 344 AGKTVV 349
GKTV+
Sbjct: 181 TGKTVL 186
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 127 bits (322), Expect = 6e-34
Identities = 67/195 (34%), Positives = 109/195 (55%), Gaps = 21/195 (10%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLL---NLLSGRLMEPTVGGSITYNDHPYSK 225
+ +L GI +V GEV+ ++GPSGSGK+TLL NLL E G+I + +
Sbjct: 12 DFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLL-----EEPDSGTIIIDGLKLTD 66
Query: 226 S------LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG 279
L+ K+G V Q LFPHLTV E +T A + ++K + E+RA++++ ++G
Sbjct: 67 DKKNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKVK--GMSKAEAEERALELLEKVG 124
Query: 280 LERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQ 339
L D ++ +SGG+++RV I + +NP ++ DEPTS LD ++ +++
Sbjct: 125 LADKAD-----AYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMK 179
Query: 340 DIAEAGKTVVTTIHQ 354
D+AE G T+V H+
Sbjct: 180 DLAEEGMTMVVVTHE 194
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 128 bits (323), Expect = 1e-33
Identities = 74/238 (31%), Positives = 124/238 (52%), Gaps = 35/238 (14%)
Query: 165 TSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS 224
T K L ++ S+NPGE +AL+GPSG+GK+TLL L+G L+EPT GS+ + +
Sbjct: 9 TYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNG-LVEPT-SGSVLIDGTDIN 66
Query: 225 K-------SLKSKIGFVTQDDVLFPHLTVKET-----LTYAALLR-LPNTLTKQQKEKRA 271
K L+ +IG + Q L L+V E L + R L K++K+ RA
Sbjct: 67 KLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQ-RA 125
Query: 272 IDVINELGLE-----RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGL 326
+ + +GL R D + SGG+++RV I ++ P L+ DEP + L
Sbjct: 126 LAALERVGLLDKAYQRA-DQL---------SGGQQQRVAIARALMQQPKLILADEPVASL 175
Query: 327 DSTTALRIVQMLQDIA-EAGKTVVTTIHQPSSRLFHKF-DKLILLGKGSLLYFGKASE 382
D ++ +++ +L+ I E G TV+ ++HQ L ++ D+++ L G +++ G +E
Sbjct: 176 DPASSRQVMDLLKRINREEGITVIVSLHQVD--LAREYADRIVGLKDGRIVFDGPPAE 231
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 126 bits (319), Expect = 1e-33
Identities = 66/224 (29%), Positives = 123/224 (54%), Gaps = 17/224 (7%)
Query: 159 VILKGMTSS-EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSIT 217
+ L+ +T +K L+G++ ++ PG + L+GP+G+GKTTL+ +L+ L P+ G+I
Sbjct: 1 LQLENLTKRYGKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILAT-LTPPS-SGTIR 57
Query: 218 YNDHPYSKS---LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDV 274
+ K L+ +IG++ Q+ ++P+ TV+E L Y A L+ + ++ + R +V
Sbjct: 58 IDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLK---GIPSKEVKARVDEV 114
Query: 275 INELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRI 334
+ + L IG +SGG R+RV I ++ +PS+L +DEPT+GLD +R
Sbjct: 115 LELVNLGDRAKKKIGS-----LSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRF 169
Query: 335 VQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378
+L ++ E + V+ + H +++ +L KG L++ G
Sbjct: 170 RNLLSELGE-DRIVILSTHIVEDVESL-CNQVAVLNKGKLVFEG 211
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 123 bits (312), Expect = 3e-32
Identities = 69/193 (35%), Positives = 113/193 (58%), Gaps = 18/193 (9%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS-- 226
+K++L GI+ SV GEV+ ++GPSGSGK+TLL L+G L EP GSIT +
Sbjct: 14 DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNG-LEEPD-SGSITVDGEDVGDKKD 71
Query: 227 ---LKSKIGFVTQDDVLFPHLTVKETLTYA--ALLRLPNTLTKQQKEKRAIDVINELGLE 281
L+ K+G V Q LFPHLTV E +T A + +L K + ++A++++ ++GL
Sbjct: 72 ILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLS----KAEAREKALELLEKVGLA 127
Query: 282 RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI 341
D ++ +SGG+++RV I + ++P ++ DEPTS LD ++ +++D+
Sbjct: 128 DKAD-----AYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDL 182
Query: 342 AEAGKTVVTTIHQ 354
AE G T++ H+
Sbjct: 183 AEEGMTMIIVTHE 195
|
Length = 240 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 123 bits (310), Expect = 5e-32
Identities = 73/228 (32%), Positives = 117/228 (51%), Gaps = 27/228 (11%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225
+ +L ++ ++ G+ +A++GPSGSGK+T+L LL R + + GSI + +
Sbjct: 13 GRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLF-RFYDVS-SGSILIDGQDIREVTL 70
Query: 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAI-----DVINELG 279
SL+ IG V QD VLF + T+ + Y T ++ + A D I +
Sbjct: 71 DSLRRAIGVVPQDTVLF-NDTIGYNIRYGRP-----DATDEEVIEAAKAAQIHDKI--MR 122
Query: 280 LERCQDTMIGGSFVRGV--SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQM 337
DT++G RG+ SGGE++RV I I+ NP +L LDE TS LD+ T I
Sbjct: 123 FPDGYDTIVGE---RGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAA 179
Query: 338 LQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385
L+D++ G+T + H+ S+ DK+I+L G ++ G E +A
Sbjct: 180 LRDVS-KGRTTIVIAHRLST--IVNADKIIVLKDGRIVERGTHEELLA 224
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 124 bits (314), Expect = 2e-31
Identities = 56/181 (30%), Positives = 95/181 (52%), Gaps = 12/181 (6%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SLKS 229
++ I+ + GE + L+GPSG GKTTLL +++G +P+ G I + + K
Sbjct: 20 AVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAG-FEQPS-SGEILLDGEDITDVPPEKR 77
Query: 230 KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIG 289
IG V Q LFPH+TV+E + + L++ L K + + R + + +GLE
Sbjct: 78 PIGMVFQSYALFPHMTVEENVAFG--LKVRKKLKKAEIKARVEEALELVGLEG-----FA 130
Query: 290 GSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA-EAGKTV 348
+SGG+++RV + ++ P +L LDEP S LD+ ++ + L+++ E G T
Sbjct: 131 DRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITF 190
Query: 349 V 349
V
Sbjct: 191 V 191
|
Length = 352 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 121 bits (306), Expect = 2e-31
Identities = 67/231 (29%), Positives = 116/231 (50%), Gaps = 28/231 (12%)
Query: 164 MTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPY 223
K L ++ + GE + L+GP+GSGK+TLL LL+G L++PT G + +
Sbjct: 11 FRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNG-LLKPT-SGEVLVDGLDT 68
Query: 224 S-----KSLKSKIGFVTQDDVLFPHL-----TVKETLTYAAL-LRLPNTLTKQQKEKRAI 272
S L+ K+G V Q+ P TV++ + + L LP +++ E+R
Sbjct: 69 SSEKSLLELRQKVGLVFQN----PDDQLFGPTVEDEVAFGLENLGLP----REEIEERVA 120
Query: 273 DVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTAL 332
+ + +GLE D +SGG+++RV I + + P +L LDEPT+GLD
Sbjct: 121 EALELVGLEELLDRPP-----FNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRR 175
Query: 333 RIVQMLQDIA-EAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382
++++L+ + E GKT++ H + D++++L G +L G +E
Sbjct: 176 ELLELLKKLKEEGGKTIIIVTHDL-ELVLEYADRVVVLDDGKILADGDPAE 225
|
Length = 235 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 127 bits (322), Expect = 2e-31
Identities = 77/270 (28%), Positives = 128/270 (47%), Gaps = 36/270 (13%)
Query: 125 DIPEDIEAGTRERPKFQTEPTLPIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGE 184
D ++E ++F +V++ +K +L I+ S+ PGE
Sbjct: 310 DEEPEVEDPPDPLKDTIGS------IEFENVSFSY-------PGKKPVLKDISFSIEPGE 356
Query: 185 VLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS----KSLKSKIGFVTQDDVL 240
+A++GPSGSGK+TL+ LL RL +PT G I + SL+ +IG V+QD +L
Sbjct: 357 KVAIVGPSGSGKSTLIKLLL-RLYDPT-SGEILIDGIDIRDISLDSLRKRIGIVSQDPLL 414
Query: 241 FPHLTVKETLTYAALLRLPNTLTKQQKEKRAI-----DVINELGLERCQDTMIGGSFVRG 295
F T++E + T ++ E+ + I L DT++G V
Sbjct: 415 F-SGTIRENIALGR-----PDATDEEIEEALKLANAHEFIAN--LPDGYDTIVGERGVN- 465
Query: 296 VSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQP 355
+SGG+R+R+ I ++ NP +L LDE TS LD+ T ++Q G+T + H+
Sbjct: 466 LSGGQRQRLAIARALLRNPPILILDEATSALDTET-EALIQDALKKLLKGRTTLIIAHRL 524
Query: 356 SSRLFHKFDKLILLGKGSLLYFGKASEAMA 385
S+ D++I+L G ++ G E +A
Sbjct: 525 ST--IKNADRIIVLDNGRIVERGTHEELLA 552
|
Length = 567 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 120 bits (304), Expect = 3e-31
Identities = 63/194 (32%), Positives = 99/194 (51%), Gaps = 23/194 (11%)
Query: 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225
++ L ++ + GE + L GPSG+GK+TLL L+ G PT G I N H S+
Sbjct: 15 REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEE-RPT-RGKILVNGHDLSRLKGR 72
Query: 226 ---SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKE--KRAIDVINELGL 280
L+ +IG V QD L P TV E + LR+ + K +E +R +V++ +GL
Sbjct: 73 EIPFLRRQIGVVFQDFRLLPDRTVYENVALP--LRV---IGKPPREIRRRVSEVLDLVGL 127
Query: 281 -ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQ 339
+ + +SGGE++RV I I+ P++L DEPT LD + I+++ +
Sbjct: 128 KHKARA------LPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFE 181
Query: 340 DIAEAGKTVVTTIH 353
+I G TV+ H
Sbjct: 182 EINRLGTTVLMATH 195
|
Length = 223 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 120 bits (302), Expect = 3e-31
Identities = 64/205 (31%), Positives = 99/205 (48%), Gaps = 20/205 (9%)
Query: 182 PGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKS--------KIGF 233
EV + G SG+GK+TLL ++G L +P GG+I N S K KIG
Sbjct: 22 NEEVTGIFGASGAGKSTLLRCIAG-LEKPD-GGTIVLNGTVLFDSRKKINLPPQQRKIGL 79
Query: 234 VTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFV 293
V Q LFPHL V+E L + L R N + ++ +++ LGL+ + +
Sbjct: 80 VFQQYALFPHLNVRENLAFG-LKRKRNREDRISVDE----LLDLLGLDH-----LLNRYP 129
Query: 294 RGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIH 353
+SGGE++RV + + P LL LDEP S LD L+++ L+ I + V +
Sbjct: 130 AQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVT 189
Query: 354 QPSSRLFHKFDKLILLGKGSLLYFG 378
S + D+++++ G L Y G
Sbjct: 190 HDLSEAEYLADRIVVMEDGRLQYIG 214
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 119 bits (301), Expect = 5e-31
Identities = 71/210 (33%), Positives = 103/210 (49%), Gaps = 20/210 (9%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK------- 225
L+GI S++ GE + L+GPSG+GK+TLL L+ PT G+I N S
Sbjct: 17 LDGINISISAGEFVFLVGPSGAGKSTLLKLIYKE-ELPT-SGTIRVNGQDVSDLRGRAIP 74
Query: 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQD 285
L+ KIG V QD L P V E + +A L + ++ KR + +GL
Sbjct: 75 YLRRKIGVVFQDFRLLPDRNVYENVAFA--LEVTGV-PPREIRKRVPAALELVGLSHKHR 131
Query: 286 TMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAG 345
+ +SGGE++RV I I+ +P++L DEPT LD T I+ +L+ I +AG
Sbjct: 132 AL-----PAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAG 186
Query: 346 KTVVTTIHQPSSRLFHKFDK-LILLGKGSL 374
TVV H + L +I L +G L
Sbjct: 187 TTVVVATH--AKELVDTTRHRVIALERGKL 214
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 119 bits (300), Expect = 9e-31
Identities = 54/189 (28%), Positives = 94/189 (49%), Gaps = 19/189 (10%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS------- 224
L+ ++ S+ GE L L+G SGSGK+TL + G + GSI ++
Sbjct: 20 ALDDVSFSIKKGETLGLVGESGSGKSTLARAILG--LLKPTSGSIIFDGKDLLKLSRRLR 77
Query: 225 KSLKSKIGFVTQD--DVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL-E 281
K + +I V QD L P +T+ E + + + K+ +++ + ++ +GL E
Sbjct: 78 KIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLS-KKEARKEAVLLLLVGVGLPE 136
Query: 282 RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI 341
+ + +SGG+R+RV I + +NP LL DEPTS LD + +I+ +L+ +
Sbjct: 137 EVLN-----RYPHELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKL 191
Query: 342 AEA-GKTVV 349
E G T++
Sbjct: 192 QEELGLTLL 200
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 120 bits (302), Expect = 1e-30
Identities = 74/239 (30%), Positives = 121/239 (50%), Gaps = 18/239 (7%)
Query: 153 TDVTYKVILKGMTSS-EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPT 211
+ ++G+T S ++ IL+G+ V GE+LA++G SGSGK+TLL L+ G L+ P
Sbjct: 3 ASPEPLIEVRGVTKSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILG-LLRPD 61
Query: 212 VGGSITYNDHPYSK-------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTK 264
G I + + ++ ++G + Q LF LTV E + + LR L +
Sbjct: 62 -KGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAF--PLREHTKLPE 118
Query: 265 QQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTS 324
+ + + +GL + +SGG RKRV + I ++P LLFLDEPTS
Sbjct: 119 SLIRELVLMKLELVGL----RGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTS 174
Query: 325 GLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382
GLD +A I ++++++ +A G TV+ H S L D++ +L G ++ G E
Sbjct: 175 GLDPISAGVIDELIRELNDALGLTVIMVTHDLDS-LLTIADRVAVLADGKVIAEGTPEE 232
|
Length = 263 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 118 bits (297), Expect = 2e-30
Identities = 65/211 (30%), Positives = 112/211 (53%), Gaps = 15/211 (7%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKI 231
+L ++ V PGE LA++GP+G+GK+TLL + G L++PT G SI P K K +I
Sbjct: 14 VLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILG-LLKPTSG-SIRVFGKPLEKERK-RI 70
Query: 232 GFVTQD---DVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAID-VINELGLERCQDTM 287
G+V Q D FP ++V++ + + +K +D + +GL D
Sbjct: 71 GYVPQRRSIDRDFP-ISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQ 129
Query: 288 IGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKT 347
IG +SGG+++RV + ++ +P LL LDEP +G+D T I ++L+++ G T
Sbjct: 130 IGE-----LSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMT 184
Query: 348 VVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378
++ H + FD+++LL + ++ G
Sbjct: 185 ILVVTHDLGL-VLEYFDRVLLLNRT-VVASG 213
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 120 bits (304), Expect = 2e-30
Identities = 78/284 (27%), Positives = 136/284 (47%), Gaps = 34/284 (11%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225
K ++ + ++ GE L L+GPSGSGKTT L +++ RL+EPT G I + S
Sbjct: 13 NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMIN-RLIEPT-SGEILIDGEDISDLDP 70
Query: 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTL--TKQQKEKRAIDVINELGLER 282
L+ KIG+V Q LFPHLTV E + +P L K++ +KRA ++++ +GL+
Sbjct: 71 VELRRKIGYVIQQIGLFPHLTVAENIAT-----VPKLLGWDKERIKKRADELLDLVGLDP 125
Query: 283 CQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI- 341
+ + +SGG+++RV + + +P +L +DEP LD T ++ + ++++
Sbjct: 126 SE---YADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQ 182
Query: 342 AEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIGCSPQIAMNPA 401
E GKT+V H D++ ++ G ++ + E I NPA
Sbjct: 183 KELGKTIVFVTHD-IDEALKLADRIAVMDAGEIVQYDTPDE-------------ILANPA 228
Query: 402 -EFLLDLANGNLHDVSVPSELQDRVQTENSENDTANGKPTPAIV 444
+F+ D + + + S + E A+G+P
Sbjct: 229 NDFVEDFFGESERGLRLLSLVSVADAVRRGE--PADGEPLLEGF 270
|
Length = 309 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 124 bits (313), Expect = 4e-30
Identities = 74/275 (26%), Positives = 129/275 (46%), Gaps = 26/275 (9%)
Query: 116 ADSKPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLKFTDVTYKVILKGMTSSEEKDILNG 175
A K F+ + P K + PI + ++++ + K L+
Sbjct: 290 AADKLFTLLESPVAT---PGSGEKAEVANEPPIEISLENLSF-------RYPDGKPALSD 339
Query: 176 ITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS----KSLKSKI 231
+ ++ G++ AL+G SG+GK+TLLNLL G + PT G I N ++ + +I
Sbjct: 340 LNLTIKAGQLTALVGASGAGKSTLLNLLLG-FLAPT-QGEIRVNGIDLRDLSPEAWRKQI 397
Query: 232 GFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVIN-ELGLERCQDTMIGG 290
+V+Q+ LF T++E + A + + ++ + GL DT+IG
Sbjct: 398 SWVSQNPYLFAG-TIRENILLARPDASDEEIIAALDQAGLLEFVPKPDGL----DTVIGE 452
Query: 291 SFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVT 350
G+SGG+ +R+ + ++ SLL LDEPT+ LD+ T I+Q LQ++A+ KTV+
Sbjct: 453 G-GAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAK-QKTVLV 510
Query: 351 TIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385
H+ D++++L G L+ G E
Sbjct: 511 ITHRLEDAA--DADRIVVLDNGRLVEQGTHEELSE 543
|
Length = 559 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 125 bits (315), Expect = 4e-30
Identities = 74/261 (28%), Positives = 125/261 (47%), Gaps = 40/261 (15%)
Query: 124 DDIPEDIEAGTRERPKFQTEPTLPIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPG 183
D PE T P L ++F +V+++ ++ +L ++ + PG
Sbjct: 451 DTPPEQEGDKT-----LIHLPKLQGEIEFENVSFRYG------PDDPPVLEDLSLEIPPG 499
Query: 184 EVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDV 239
E +A++G SGSGK+TLL LL G +P G I + + SL+ ++G+V QD
Sbjct: 500 EKVAIVGRSGSGKSTLLKLLLGLY-KPQQ-GRILLDGVDLNDIDLASLRRQVGYVLQDPF 557
Query: 240 LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAI----DVINEL--GLERCQDTMIG--GS 291
LF +++E + P ++ E + + I L G DT +G G+
Sbjct: 558 LF-SGSIRENIALGN----PEATDEEIIEAAQLAGAHEFIENLPMGY----DTPVGEGGA 608
Query: 292 FVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTT 351
+SGG+R+R+ + ++ P +L LDE TS LD T I+Q L I + G+TV+
Sbjct: 609 ---NLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQ-GRTVIII 664
Query: 352 IHQPSSRLFHKFDKLILLGKG 372
H+ S+ D++I+L +G
Sbjct: 665 AHRLST--IRSADRIIVLDQG 683
|
Length = 709 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 120 bits (302), Expect = 7e-30
Identities = 67/224 (29%), Positives = 106/224 (47%), Gaps = 28/224 (12%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228
++L + + GE + L+GPSG GK+TLL +++G L EPT G I + +
Sbjct: 15 SFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAG-LEEPT-SGEILIDGRDVTDLPP 72
Query: 229 SK--IGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE----R 282
K I V Q+ L+PH+TV E + + LR + K + +KR +V LGLE R
Sbjct: 73 EKRGIAMVFQNYALYPHMTVYENIAFGLKLR---GVPKAEIDKRVKEVAKLLGLEHLLNR 129
Query: 283 CQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA 342
+SGG+R+RV + ++ P + LDEP S LD LR V M +I
Sbjct: 130 K---------PLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLD--AKLR-VLMRSEIK 177
Query: 343 EAGKTVVTTI----HQPSSRLFHKFDKLILLGKGSLLYFGKASE 382
+ + + TT H + D+++++ G + G E
Sbjct: 178 KLHERLGTTTIYVTHDQVEAMT-LADRIVVMNDGRIQQVGTPLE 220
|
Length = 338 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 116 bits (293), Expect = 8e-30
Identities = 75/226 (33%), Positives = 117/226 (51%), Gaps = 21/226 (9%)
Query: 168 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS--- 224
E+K +L I S+ PGE +A++GP+G+GKTTL+NLL R +P G I +
Sbjct: 14 EKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLM-RFYDPQ-KGQILIDGIDIRDIS 71
Query: 225 -KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINEL--GLE 281
KSL+S IG V QD LF T+ E + + + KE A D I +L G
Sbjct: 72 RKSLRSMIGVVLQDTFLFSG-TIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGY- 129
Query: 282 RCQDTMIG--GSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQ 339
DT++G G +S GER+ + I ++ +P +L LDE TS +D+ T I + L+
Sbjct: 130 ---DTVLGENGG---NLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALE 183
Query: 340 DIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385
+ + G+T + H+ S+ DK+++L G ++ G E +A
Sbjct: 184 KLMK-GRTSIIIAHRLSTIKNA--DKILVLDDGKIIEEGTHDELLA 226
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 115 bits (291), Expect = 9e-30
Identities = 59/209 (28%), Positives = 108/209 (51%), Gaps = 20/209 (9%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYND---HPYSK 225
+K IL+ + ++ G++ A++G SGSGK+TLLN++ L+E G + N P +
Sbjct: 10 DKVILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIG--LLEKFDSGQVYLNGQETPPLNS 67
Query: 226 SLKS-----KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL 280
S K+G++ Q+ L + TV+E L + L+K++K ++ + + ++GL
Sbjct: 68 KKASKFRREKLGYLFQNFALIENETVEENLDLGLKYK---KLSKKEKREKKKEALEKVGL 124
Query: 281 ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQD 340
I +SGGE++RV + I+ P L+ DEPT LD ++ +L +
Sbjct: 125 NLKLKQKI-----YELSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVLDLLLE 179
Query: 341 IAEAGKTVVTTIHQPSSRLFHKFDKLILL 369
+ + GKT++ H P + + D++I L
Sbjct: 180 LNDEGKTIIIVTHDPE--VAKQADRVIEL 206
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 116 bits (294), Expect = 1e-29
Identities = 63/179 (35%), Positives = 93/179 (51%), Gaps = 12/179 (6%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKI 231
+L I SV GE +A++GPSG GK+TLL L++G L +PT G + + P I
Sbjct: 18 VLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAG-LEKPT-SGEVLLDGRP-VTGPGPDI 74
Query: 232 GFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGS 291
G+V Q+D L P LTV + + LR +K + +RA +++ +GL +D
Sbjct: 75 GYVFQEDALLPWLTVLDNVALGLELRG---KSKAEARERAKELLELVGLAGFED-----K 126
Query: 292 FVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI-AEAGKTVV 349
+ +SGG R+RV I + P LL LDEP LD+ T + L + E KTV+
Sbjct: 127 YPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVL 185
|
Length = 248 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 115 bits (290), Expect = 1e-29
Identities = 67/210 (31%), Positives = 103/210 (49%), Gaps = 20/210 (9%)
Query: 171 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----- 225
L+ ++ + GE L L GPSG+GKTTLL LL G L P+ G + ++
Sbjct: 16 AALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALT-PS-RGQVRIAGEDVNRLRGRQ 73
Query: 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC 283
L+ +IG V QD L P TV E + +R +++ ++R + ++GLE
Sbjct: 74 LPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVR---GKKEREIQRRVGAALRQVGLEHK 130
Query: 284 QDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE 343
D F +SGGE++RV I I+ +P LL DEPT LD + RI+ +L+ + +
Sbjct: 131 ADA-----FPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNK 185
Query: 344 AGKTVVTTIHQPS-SRLFHKFDKLILLGKG 372
G TV+ H S ++I+L G
Sbjct: 186 RGTTVIVATHDLSLVDRVAH--RVIILDDG 213
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 116 bits (293), Expect = 2e-29
Identities = 69/237 (29%), Positives = 117/237 (49%), Gaps = 33/237 (13%)
Query: 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225
L + +N GE++A++GPSG+GK+TLL L+G L++PT G I +N +K
Sbjct: 17 HQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNG-LVDPT-SGEILFNGVQITKLKGK 74
Query: 226 ---SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLP------NTLTKQQKEKRAIDVIN 276
L+ IG + Q L P L+V E + L +K+ K +A+D +
Sbjct: 75 ELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDK-AQALDALE 133
Query: 277 ELGLE-----RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTA 331
+G+ R T+ SGG+++RV I ++ P ++ DEP + LD +A
Sbjct: 134 RVGILDKAYQRA-STL---------SGGQQQRVAIARALVQQPKIILADEPVASLDPESA 183
Query: 332 LRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYF 387
+++ +L+DI + G TV+ +HQ + D++I L G +++ G ASE
Sbjct: 184 KKVMDILKDINQEDGITVIVNLHQVDLAKKY-ADRIIGLKAGRIVFDGPASELTDEA 239
|
Length = 258 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 115 bits (291), Expect = 2e-29
Identities = 74/245 (30%), Positives = 123/245 (50%), Gaps = 27/245 (11%)
Query: 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME 209
++F +VT++ + +L I+ + GE +AL+GPSGSGK+TL+NL+ R +
Sbjct: 1 VEFKNVTFRY------PGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIP-RFYD 53
Query: 210 PTVGGSITYNDHPYS----KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQ 265
G I + H SL+ +IG V+QD LF + TV E + Y + +
Sbjct: 54 VD-SGRILIDGHDVRDYTLASLRRQIGLVSQDVFLF-NDTVAENIAYGRPGATREEVEEA 111
Query: 266 QKEKRAIDVINEL--GLERCQDTMIGGSFVRGV--SGGERKRVCIGNEIIINPSLLFLDE 321
+ A + I EL G DT+IG RGV SGG+R+R+ I ++ +P +L LDE
Sbjct: 112 ARAANAHEFIMELPEGY----DTVIG---ERGVKLSGGQRQRIAIARALLKDPPILILDE 164
Query: 322 PTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKAS 381
TS LD+ + + L+ + + +T H+ S+ D++++L G ++ G
Sbjct: 165 ATSALDTESERLVQAALERLMK-NRTTFVIAHRLST--IENADRIVVLEDGKIVERGTHE 221
Query: 382 EAMAY 386
E +A
Sbjct: 222 ELLAQ 226
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 115 bits (291), Expect = 2e-29
Identities = 62/189 (32%), Positives = 102/189 (53%), Gaps = 19/189 (10%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDH-----PYSKSL 227
L+ ++ SV PGE+ L+GP+G+GKTTL NL+SG L PT GS+ ++ P +
Sbjct: 16 LDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFL-RPT-SGSVLFDGEDITGLPPHEIA 73
Query: 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTL-------TKQQKEKRAIDVINELGL 280
+ IG Q LFP LTV E + AA R + L +++ +RA +++ +GL
Sbjct: 74 RLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGL 133
Query: 281 ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQD 340
D G +S G+++R+ I + +P LL LDEP +GL+ + +++++
Sbjct: 134 ADLADRPAG-----ELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRE 188
Query: 341 IAEAGKTVV 349
+ E G TV+
Sbjct: 189 LRERGITVL 197
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 115 bits (290), Expect = 4e-29
Identities = 74/233 (31%), Positives = 118/233 (50%), Gaps = 35/233 (15%)
Query: 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225
K L I ++NPGE +A++GPSG+GK+TLL ++ RL+EP+ GSI +K
Sbjct: 15 KQALKNINLNINPGEFVAIIGPSGAGKSTLLRCIN-RLVEPS-SGSILLEGTDITKLRGK 72
Query: 226 ---SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLP------NTLTKQQKEKRAIDVIN 276
L+ +IG + Q L LTV E + + L P +++ KE RA+ +
Sbjct: 73 KLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKE-RALSALE 131
Query: 277 ELGLE-----RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTA 331
+GL R D + SGG+++RV I + P L+ DEP + LD T+
Sbjct: 132 RVGLADKAYQRA-DQL---------SGGQQQRVAIARALAQQPDLILADEPIASLDPKTS 181
Query: 332 LRIVQMLQDIA-EAGKTVVTTIHQPSSRLFHKF-DKLILLGKGSLLYFGKASE 382
+++ L+ I E G TV+ +HQ L K+ D+++ L G +++ G SE
Sbjct: 182 KQVMDYLKRINKEDGITVIINLHQVD--LAKKYADRIVGLKAGEIVFDGAPSE 232
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 112 bits (283), Expect = 7e-29
Identities = 62/215 (28%), Positives = 102/215 (47%), Gaps = 50/215 (23%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---- 224
+ +L+ ++ S+ GE++ ++GP+G+GK+TLL L+G L++P+ G I + +
Sbjct: 11 GRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAG-LLKPS-SGEILLDGKDLASLSP 68
Query: 225 KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQ 284
K L KI +V Q L L L ++ NEL
Sbjct: 69 KELARKIAYVPQ------------ALELLGLAHL--------ADRP----FNEL------ 98
Query: 285 DTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA-E 343
SGGER+RV + + P +L LDEPTS LD + ++++L+ +A E
Sbjct: 99 ------------SGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARE 146
Query: 344 AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378
GKTVV +H + + D++ILL G ++ G
Sbjct: 147 RGKTVVMVLHDLNLAARY-ADRVILLKDGRIVAQG 180
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 112 bits (284), Expect = 2e-28
Identities = 56/185 (30%), Positives = 98/185 (52%), Gaps = 20/185 (10%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS----- 226
IL G++ +V GE++AL+G +G+GKTTLL + G + P GSI ++ +
Sbjct: 15 ILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMG--LLPPRSGSIRFDGRDITGLPPHER 72
Query: 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINEL--GLERCQ 284
++ IG+V + +FP LTV+E L A R ++ K K ++ + EL L+ +
Sbjct: 73 ARAGIGYVPEGRRIFPELTVEENLLLGAYAR------RRAKRKARLERVYELFPRLKERR 126
Query: 285 DTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA 344
+ G+ SGGE++ + I ++ P LL LDEP+ GL I + ++++ +
Sbjct: 127 KQL-AGTL----SGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDE 181
Query: 345 GKTVV 349
G T++
Sbjct: 182 GVTIL 186
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 111 bits (281), Expect = 7e-28
Identities = 67/229 (29%), Positives = 114/229 (49%), Gaps = 26/229 (11%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPY-----SKS 226
LN ++ + GE L ++G SGSGK+TL LL+G L +P+ G SI + P +K+
Sbjct: 22 ALNNVSLEIERGETLGIVGESGSGKSTLARLLAG-LEKPSSG-SILLDGKPLAPKKRAKA 79
Query: 227 LKSKIGFVTQD--DVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQ 284
+ V QD L P TV L+ P+ L+K Q+ R ++++++GL
Sbjct: 80 FYRPVQMVFQDPYSSLNPRRTVGRILSEPLR---PHGLSKSQQ--RIAELLDQVGL---- 130
Query: 285 DTMIGGSFVR----GVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQD 340
SF+ +SGG+R+R+ I +I P LL LDEPTS LD + +I+ +L +
Sbjct: 131 ----PPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLE 186
Query: 341 IAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSS 389
+ + I + + H D++ ++ G ++ G E +++ S
Sbjct: 187 LKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLSHPSH 235
|
Length = 252 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 110 bits (277), Expect = 8e-28
Identities = 62/206 (30%), Positives = 111/206 (53%), Gaps = 15/206 (7%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228
L+ I+ SV GE+ L+GP+G+GKTT + ++ G ++ P G + ++ P + +
Sbjct: 12 RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILG-IILPD-SGEVLFDGKPLDIAAR 69
Query: 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMI 288
++IG++ ++ L+P + V + L Y A L+ L K++ +R + + L L +
Sbjct: 70 NRIGYLPEERGLYPKMKVIDQLVYLAQLK---GLKKEEARRRIDEWLERLELSEYAN--- 123
Query: 289 GGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTV 348
V +S G +++V +I +P LL LDEP SGLD + +++++A AGKTV
Sbjct: 124 --KRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTV 181
Query: 349 VTTIHQPSS--RLFHKFDKLILLGKG 372
+ + HQ L D+++LL KG
Sbjct: 182 ILSTHQMELVEEL---CDRVLLLNKG 204
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 110 bits (277), Expect = 1e-27
Identities = 65/219 (29%), Positives = 111/219 (50%), Gaps = 26/219 (11%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYN--DHPYSKSLKSK 230
L ++ V G+ ++GP+GSGK+ LL ++G ++P G I N D K
Sbjct: 15 LKNVSLEVERGDYFVILGPTGSGKSVLLETIAG-FIKPD-SGKILLNGKDITNLPPEKRD 72
Query: 231 IGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGG 290
I +V Q+ LFPH+TV + + Y R + K++ E++ +++ LG++ +
Sbjct: 73 ISYVPQNYALFPHMTVYKNIAYGLKKRKVD---KKEIERKVLEIAEMLGIDHLLN----- 124
Query: 291 SFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVT 350
+SGGE++RV I +++NP +L LDEP S LD T ++ + L+ I + + VT
Sbjct: 125 RKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRK--EFGVT 182
Query: 351 TIHQPSSRLFHKF-------DKLILLGKGSLLYFGKASE 382
+H + H F DK+ ++ G L+ GK E
Sbjct: 183 VLH-----VTHDFEEAWALADKVAIMLNGKLIQVGKPEE 216
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 110 bits (276), Expect = 2e-27
Identities = 68/217 (31%), Positives = 110/217 (50%), Gaps = 23/217 (10%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSG--RLMEPTVGGSITYNDHPYSKS 226
K +L I +NPGE++ L GPSGSGKTTLL L+ G + E GS+ +
Sbjct: 17 RKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQE----GSLKVLGQELYGA 72
Query: 227 -------LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG 279
L+ IG++ Q L LT ++ + A L L L+ Q+ +RA ++ +G
Sbjct: 73 SEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMA--LELQPNLSYQEARERARAMLEAVG 130
Query: 280 LERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQ 339
L D + +SGG+++RV I ++ P L+ DEPT+ LDS + +V+++Q
Sbjct: 131 LGDHLD-----YYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQ 185
Query: 340 DIA-EAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLL 375
+A E G T++ H R+ D+++ + G LL
Sbjct: 186 KLAREQGCTILIVTHDN--RILDVADRIVHMEDGKLL 220
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 110 bits (277), Expect = 2e-27
Identities = 65/202 (32%), Positives = 105/202 (51%), Gaps = 13/202 (6%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKI 231
L ++ ++ GE++ ++GPSG GKTTLLNL++G + P GSI N ++
Sbjct: 20 ALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAG-FVTP-SRGSIQLNGRRIEGP-GAER 76
Query: 232 GFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGS 291
G V Q++ L P L V + + + LR + K Q+ + A ++ +GLE + I
Sbjct: 77 GVVFQNEALLPWLNVIDNVAFGLQLR---GIEKAQRREIAHQMLALVGLEGAEHKYIW-- 131
Query: 292 FVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVT 350
+SGG R+RV I + + P LL LDEP LD+ T ++ ++L D+ + GK V+
Sbjct: 132 ---QLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLL 188
Query: 351 TIHQPSSRLFHKFDKLILLGKG 372
H LF +L++L G
Sbjct: 189 ITHDIEEALFLA-TRLVVLSPG 209
|
Length = 259 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 110 bits (276), Expect = 2e-27
Identities = 61/208 (29%), Positives = 105/208 (50%), Gaps = 18/208 (8%)
Query: 176 ITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSIT---YNDHPYSKSLKSKIG 232
++ GE+ L+G +G+GKTTLL +++ L+ P G +T + ++ KIG
Sbjct: 21 VSFEAEEGEITGLLGENGAGKTTLLRMIAT-LLIPD-SGKVTIDGVDTVRDPSFVRRKIG 78
Query: 233 FVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSF 292
+ + L+ LT +E L Y A L N L++++ + R ++ L L D
Sbjct: 79 VLFGERGLYARLTARENLKYFARL---NGLSRKEIKARIAELSKRLQLLEYLDRR----- 130
Query: 293 VRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTI 352
V S G +++V I ++ +PS+L LDEPTSGLD T + ++ + G+ V+ +
Sbjct: 131 VGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSS 190
Query: 353 H--QPSSRLFHKFDKLILLGKGSLLYFG 378
H Q L D++I+L KG ++ G
Sbjct: 191 HIMQEVEAL---CDRVIVLHKGEVVLEG 215
|
Length = 245 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 115 bits (290), Expect = 3e-27
Identities = 52/186 (27%), Positives = 93/186 (50%), Gaps = 17/186 (9%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS------ 226
++ ++ + GE L L+G SGSGK+TL +L+G L+ P+ GSI ++ +
Sbjct: 307 VDDVSFDLREGETLGLVGESGSGKSTLARILAG-LLPPS-SGSIIFDGQDLDLTGGELRR 364
Query: 227 --LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQ 284
+ ++ F L P +TV + L LR+ + ++ R +++ +GL
Sbjct: 365 LRRRIQMVFQDPYSSLNPRMTVGDILAEP--LRIHGGGSGAERRARVAELLELVGLPP-- 420
Query: 285 DTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI-AE 343
+ +SGG+R+RV I + + P LL LDEP S LD + +++ +L+D+ E
Sbjct: 421 --EFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEE 478
Query: 344 AGKTVV 349
G T +
Sbjct: 479 LGLTYL 484
|
Length = 539 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 109 bits (275), Expect = 3e-27
Identities = 69/225 (30%), Positives = 116/225 (51%), Gaps = 27/225 (12%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS----KSL 227
IL G++ ++ PG+ +AL+G SG GK+T+++LL R +PT G I + + L
Sbjct: 18 ILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLE-RFYDPTS-GEILLDGVDIRDLNLRWL 75
Query: 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKR---AIDVINEL--GLER 282
+S+IG V+Q+ VLF T+ E + Y + T + ++ + D I L G
Sbjct: 76 RSQIGLVSQEPVLFD-GTIAENIRYG---KPDATDEEVEEAAKKANIHDFIMSLPDGY-- 129
Query: 283 CQDTMIGGSFVRGV--SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQD 340
DT++G RG SGG+++R+ I ++ NP +L LDE TS LD+ + + + L
Sbjct: 130 --DTLVGE---RGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDR 184
Query: 341 IAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385
+ G+T + H+ S+ D + +L G ++ G E MA
Sbjct: 185 AMK-GRTTIVIAHRLST--IRNADLIAVLQNGQVVEQGTHDELMA 226
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 112 bits (281), Expect = 5e-27
Identities = 61/208 (29%), Positives = 102/208 (49%), Gaps = 15/208 (7%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYN-----DHPYSKSL 227
L+ I+ + GE++AL+GPSG+GK+TLL +++G L P G I N D
Sbjct: 18 LDDISLDIKSGELVALLGPSGAGKSTLLRIIAG-LETPD-AGRIRLNGRVLFDVSNLAVR 75
Query: 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTM 287
K+GFV Q LFPH+TV + + + +R + + + + EL L Q
Sbjct: 76 DRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRAR-----VEEL-LRLVQLEG 129
Query: 288 IGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI-AEAGK 346
+ + +SGG+R+RV + + + P +L LDEP LD+ + + L+ + G
Sbjct: 130 LADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGV 189
Query: 347 TVVTTIHQPSSRLFHKFDKLILLGKGSL 374
T V H L D++++L +G +
Sbjct: 190 TTVFVTHDQEEALEL-ADRVVVLNQGRI 216
|
Length = 345 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 111 bits (279), Expect = 5e-27
Identities = 57/192 (29%), Positives = 100/192 (52%), Gaps = 17/192 (8%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP---TVGGSITYNDHP-YSKSL 227
++G++ + GE+L ++G SGSGK+ L + G L +P VGG I ++ S S
Sbjct: 20 AVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSE 79
Query: 228 K-------SKIGFVTQD--DVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINEL 278
K +I + QD L P +T+ + + L L+K++ ++RAI+++ +
Sbjct: 80 KELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIA-EVLRLHGKGLSKKEAKERAIELLELV 138
Query: 279 GLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQML 338
G+ S+ +SGG R+RV I + +NP LL DEPT+ LD T +I+ +L
Sbjct: 139 GIPD--PERRLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLL 196
Query: 339 QDIA-EAGKTVV 349
+++ E G ++
Sbjct: 197 KELQREKGTALI 208
|
Length = 316 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 108 bits (271), Expect = 7e-27
Identities = 67/211 (31%), Positives = 114/211 (54%), Gaps = 18/211 (8%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSIT---YNDHPYSKSLKS 229
++G++ +V PGEV L+GP+G+GKTT L +L+G L+EP G T ++ +
Sbjct: 21 VDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAG-LLEPD-AGFATVDGFDVVKEPAEARR 78
Query: 230 KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIG 289
++GFV+ L+ LT +E L Y A L L + R ++ + LG+E D +G
Sbjct: 79 RLGFVSDSTGLYDRLTARENLEYFAGL---YGLKGDELTARLEELADRLGMEELLDRRVG 135
Query: 290 GSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVV 349
G S G R++V I ++ +P +L LDEPT+GLD + + ++ + GK ++
Sbjct: 136 G-----FSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCIL 190
Query: 350 TTIH--QPSSRLFHKFDKLILLGKGSLLYFG 378
+ H Q RL D++++L +G ++Y G
Sbjct: 191 FSTHIMQEVERL---CDRVVVLHRGRVVYEG 218
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 108 bits (271), Expect = 8e-27
Identities = 66/220 (30%), Positives = 114/220 (51%), Gaps = 31/220 (14%)
Query: 168 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225
+E L+ ++ ++ GE +A++G GSGK+TLL LL+G L +PT GS+ + +
Sbjct: 15 QEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAG-LYKPT-SGSVLLDGTDIRQLD 72
Query: 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-- 281
L+ IG+V QD LF + T+++ +T A L ++R + G+
Sbjct: 73 PADLRRNIGYVPQDVTLF-YGTLRDNITLGAPL---------ADDERILRAAELAGVTDF 122
Query: 282 -----RCQDTMIG--GSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRI 334
D IG G RG+SGG+R+ V + ++ +P +L LDEPTS +D + R+
Sbjct: 123 VNKHPNGLDLQIGERG---RGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERL 179
Query: 335 VQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374
+ L+ + KT++ H+PS L D++I++ G +
Sbjct: 180 KERLRQLL-GDKTLIIITHRPS--LLDLVDRIIVMDSGRI 216
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 108 bits (271), Expect = 1e-26
Identities = 64/221 (28%), Positives = 115/221 (52%), Gaps = 16/221 (7%)
Query: 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDH-----PYS 224
+ ++NG++ SV GE++ L+GP+G+GKTT ++ G L++P G I + P
Sbjct: 13 RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVG-LVKPD-SGKILLDGQDITKLPMH 70
Query: 225 KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQ 284
K + IG++ Q+ +F LTV+E + A L L+K+++E++ +++ E + +
Sbjct: 71 KRARLGIGYLPQEASIFRKLTVEENI-LAVLEIRG--LSKKEREEKLEELLEEFHITHLR 127
Query: 285 DTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA 344
+ S +SGGER+RV I + NP L LDEP +G+D I ++++ + +
Sbjct: 128 KSK-ASS----LSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDR 182
Query: 345 GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385
G V+ T H D+ ++ +G +L G E A
Sbjct: 183 GIGVLITDHN-VRETLSITDRAYIIYEGKVLAEGTPEEIAA 222
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 112 bits (283), Expect = 2e-26
Identities = 66/233 (28%), Positives = 111/233 (47%), Gaps = 23/233 (9%)
Query: 165 TSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPT--VGGSITYN--- 219
T + ++ V PGE+L ++G SGSGK+TL L G L E G + +
Sbjct: 17 TDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRD 76
Query: 220 -----DHPYSKSLKSKIGFVTQD--DVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAI 272
+ K +I + QD L P +T+ + + LRL ++ + KRA+
Sbjct: 77 LLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIR--EALRLHGKGSRAEARKRAV 134
Query: 273 DVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTAL 332
+++ ++GL D + +SGG R+RV I + + P LL DEPT+ LD TT
Sbjct: 135 ELLEQVGLP---DPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQA 191
Query: 333 RIVQMLQDI-AEAGKTVVTTIHQPS--SRLFHKFDKLILLGKGSLLYFGKASE 382
+I+ +L+D+ E G V+ H + L D+++++ KG ++ G E
Sbjct: 192 QILDLLKDLQRELGMAVLFITHDLGVVAEL---ADRVVVMYKGEIVETGPTEE 241
|
Length = 539 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 2e-26
Identities = 69/219 (31%), Positives = 105/219 (47%), Gaps = 21/219 (9%)
Query: 165 TSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS 224
E IL G+ V GE +A++GPSGSGK+TLL +L+G L +P+ G + P
Sbjct: 18 QGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAG-LDDPS-SGEVRLLGQPLH 75
Query: 225 K-------SLKSK-IGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVIN 276
K +L+++ +GFV Q L P+LT E + LR + + A ++
Sbjct: 76 KLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLELR--GESSADSRA-GAKALLE 132
Query: 277 ELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQ 336
+GL + + +SGGE++RV + P +LF DEPT LD T +I
Sbjct: 133 AVGLGKRLT-----HYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIAD 187
Query: 337 MLQDI-AEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374
+L + E G T+V H P L + D+ + L G L
Sbjct: 188 LLFALNRERGTTLVLVTHDPQ--LAARCDRQLRLRSGRL 224
|
Length = 228 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 106 bits (266), Expect = 3e-26
Identities = 63/211 (29%), Positives = 113/211 (53%), Gaps = 19/211 (9%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228
+K +L+ I+ V GE+ +GP+G+GKTT + ++ G L++P G IT++ Y K+++
Sbjct: 12 KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILG-LIKPD-SGEITFDGKSYQKNIE 69
Query: 229 --SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAID-VINELGLERCQD 285
+IG + + +P+LT +E L A L K+ ID V++ +GL+
Sbjct: 70 ALRRIGALIEAPGFYPNLTARENLRLLARLL--------GIRKKRIDEVLDVVGLKD--- 118
Query: 286 TMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAG 345
V+G S G ++R+ I ++ NP LL LDEPT+GLD + +++ + + G
Sbjct: 119 --SAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQG 176
Query: 346 KTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376
TV+ + H S + D++ ++ KG L+
Sbjct: 177 ITVLISSHL-LSEIQKVADRIGIINKGKLIE 206
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 109 bits (274), Expect = 4e-26
Identities = 59/191 (30%), Positives = 98/191 (51%), Gaps = 18/191 (9%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDH---PYSKS--- 226
L+ ++ + GE+ ++G SG+GK+TLL L++ L PT GS+ + S++
Sbjct: 22 LDDVSLEIPKGEIFGIIGYSGAGKSTLLRLIN-LLERPT-SGSVFVDGQDLTALSEAELR 79
Query: 227 -LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQD 285
L+ KIG + Q L TV E + + L L K + ++R +++ +GL D
Sbjct: 80 QLRQKIGMIFQHFNLLSSRTVFENVAFP--LELAGV-PKAEIKQRVAELLELVGLSDKAD 136
Query: 286 TMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI-AEA 344
+ +SGG+++RV I + NP +L DE TS LD T I+++L+DI E
Sbjct: 137 -----RYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINREL 191
Query: 345 GKTVVTTIHQP 355
G T+V H+
Sbjct: 192 GLTIVLITHEM 202
|
Length = 339 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 105 bits (265), Expect = 4e-26
Identities = 67/221 (30%), Positives = 110/221 (49%), Gaps = 25/221 (11%)
Query: 165 TSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS 224
+ +L G++ S+ GE++A++G SGSGK+TLL+LL G L PT G + +N S
Sbjct: 13 EGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGG-LDNPT-SGEVLFNGQSLS 70
Query: 225 KSLKSKI--------GFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVIN 276
K ++ GF+ Q L P T E + L+ + ++ ++RA +++
Sbjct: 71 KLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIG---KKSVKEAKERAYEMLE 127
Query: 277 ELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQ 336
++GLE + +SGGER+RV I ++ PSL+ DEPT LD+ A I
Sbjct: 128 KVGLEHRINHRPSE-----LSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFD 182
Query: 337 MLQDIAEAGKT---VVTTIHQPSSRLFHKFDKLILLGKGSL 374
++ ++ T VVT H L K D+++ + G L
Sbjct: 183 LMLELNRELNTSFLVVT--HDL--ELAKKLDRVLEMKDGQL 219
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 111 bits (280), Expect = 6e-26
Identities = 71/273 (26%), Positives = 128/273 (46%), Gaps = 41/273 (15%)
Query: 130 IEAGTRERPKFQTE----PTLPIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEV 185
+ ++P+ T L+ +V++ ++ L ++ GE
Sbjct: 313 LNDILDQKPEVTFPDEQTATTGQALELRNVSFTY------PGQQTKALKNFNLTLAQGEK 366
Query: 186 LALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS----KSLKSKIGFVTQDDVLF 241
+A++G SGSGK+TLL LL+G GSIT N + ++L+ I +TQ
Sbjct: 367 VAILGRSGSGKSTLLQLLAGAW--DPQQGSITLNGVEIASLDEQALRETISVLTQR---- 420
Query: 242 PHL---TVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFV----- 293
HL T+++ L A P+ ++ + ++GLE+ ++ G
Sbjct: 421 VHLFSGTLRDNLRLAN----PDASDEE-----LWAALQQVGLEKLLESAPDGLNTWLGEG 471
Query: 294 -RGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTI 352
R +SGGER+R+ + ++ + L LDEPT GLD T +++ +L + AE GKT++
Sbjct: 472 GRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAE-GKTLLMVT 530
Query: 353 HQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385
H+ R + D++I+L G ++ G +E +A
Sbjct: 531 HR--LRGLERMDRIIVLDNGKIIEEGTHAELLA 561
|
Length = 573 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 105 bits (265), Expect = 8e-26
Identities = 71/228 (31%), Positives = 119/228 (52%), Gaps = 26/228 (11%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYND------HPYSK 225
+L+GI V PGEV+A++GPSGSGKTTLL ++ L+E G+I D S+
Sbjct: 18 VLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCIN--LLEQPEAGTIRVGDITIDTARSLSQ 75
Query: 226 ------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG 279
L+ +GFV Q+ LFPH TV E + + + K++ RA +++ ++G
Sbjct: 76 QKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPV--IVKGEPKEEATARARELLAKVG 133
Query: 280 LERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQ 339
L + S+ R +SGG+++RV I + + P ++ DEPTS LD ++ ++
Sbjct: 134 LAGKET-----SYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIR 188
Query: 340 DIAEAGKTVVTTIHQPSSRLFHK--FDKLILLGKGSLLYFGKASEAMA 385
+A+ +T+V H+ S F + D+ I + +G ++ G A A
Sbjct: 189 QLAQEKRTMVIVTHEMS---FARDVADRAIFMDQGRIVEQGPAKALFA 233
|
Length = 250 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 8e-26
Identities = 60/227 (26%), Positives = 104/227 (45%), Gaps = 25/227 (11%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLL---NLLSGRLMEPTVGGSITYNDHPYSK 225
+K L I+ + GE+ AL+GPSG GK+TLL N L+ + G + +
Sbjct: 12 DKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYD 71
Query: 226 ------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG 279
L+ ++G V Q FP ++ + + Y L K K +D E
Sbjct: 72 LDVDVLELRRRVGMVFQKPNPFP-GSIYDNVAYGLRLH-------GIKLKEELDERVEEA 123
Query: 280 LERCQ--DTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQM 337
L + D + G+SGG+++R+C+ + P +L LDEPTS LD + +I ++
Sbjct: 124 LRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEEL 183
Query: 338 LQDIAEAGKTVVTT--IHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382
+ ++ + V+ T + Q ++R+ D+ L G L+ FG +
Sbjct: 184 IAELKKEYTIVIVTHNMQQ-AARV---ADRTAFLLNGRLVEFGPTEQ 226
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 2e-25
Identities = 67/214 (31%), Positives = 106/214 (49%), Gaps = 22/214 (10%)
Query: 179 SVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYN--DHPYSKSLKSKIGFVTQ 236
+V GE++A++GPSG+GK+TLLNL++G E G I N DH S + + + Q
Sbjct: 21 TVPAGEIVAILGPSGAGKSTLLNLIAG--FETPASGEILINGVDHTASPPAERPVSMLFQ 78
Query: 237 DDVLFPHLTVKETLTYAALLRLPN-TLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRG 295
++ LF HLTV + + L P L +Q+EK ++GL + G
Sbjct: 79 ENNLFAHLTVAQNI---GLGLSPGLKLNAEQREKVE-AAAAQVGLAGFLKRLPG-----E 129
Query: 296 VSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA----EAGKTVVTT 351
+SGG+R+RV + ++ +L LDEP S LD ALR +ML ++ E T++
Sbjct: 130 LSGGQRQRVALARCLVREQPILLLDEPFSALDP--ALR-AEMLALVSQLCDERKMTLLMV 186
Query: 352 IHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385
H P D+++ L G + G E ++
Sbjct: 187 THHPED-AARIADRVVFLDNGRIAAQGSTQELLS 219
|
Length = 231 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 109 bits (276), Expect = 3e-25
Identities = 77/262 (29%), Positives = 125/262 (47%), Gaps = 47/262 (17%)
Query: 127 PEDIEAGTRE--RPKFQTEPTLPIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGE 184
P + GTR RP+ Q E ++F +V++ +E L+ ++ ++ PGE
Sbjct: 445 PVERPEGTRFLHRPRLQGE------IEFRNVSFAY------PGQETPALDNVSLTIRPGE 492
Query: 185 VLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYND------HPYSKSLKSKIGFVTQDD 238
+A++G GSGK+TLL LL G L +PT GS+ + P L+ IG+V QD
Sbjct: 493 KVAIIGRIGSGKSTLLKLLLG-LYQPT-EGSVLLDGVDIRQIDPAD--LRRNIGYVPQDP 548
Query: 239 VLFPHLTVKETLTYAALL----RLPNTLTKQQKEKRAIDVINEL--GLERCQDTMIG--G 290
LF + T+++ + A + + + GL D IG G
Sbjct: 549 RLF-YGTLRDNIALGAPYADDEEILRAAELAG----VTEFVRRHPDGL----DMQIGERG 599
Query: 291 SFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVT 350
R +SGG+R+ V + ++ +P +L LDEPTS +D+ + R L+ AGKT+V
Sbjct: 600 ---RSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWL-AGKTLVL 655
Query: 351 TIHQPSSRLFHKFDKLILLGKG 372
H+ S L D++I++ G
Sbjct: 656 VTHRTS--LLDLVDRIIVMDNG 675
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 3e-25
Identities = 59/221 (26%), Positives = 108/221 (48%), Gaps = 19/221 (8%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYND-----HPYSKS 226
L G++ V GE++AL+G +G+GKTTLL + G + G I ++ P +
Sbjct: 18 ALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMG--LVRPRSGRIIFDGEDITGLPPHER 75
Query: 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINEL--GLERCQ 284
+ I +V + +FP LTV+E L A R ++ ++R ++ + EL L+ +
Sbjct: 76 ARLGIAYVPEGRRIFPRLTVEENLLLGAYAR-----RDKEAQERDLEEVYELFPRLKERR 130
Query: 285 DTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA 344
+ G+ SGGE++ + I ++ P LL LDEP+ GL I + ++++ +
Sbjct: 131 NQR-AGTL----SGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKE 185
Query: 345 GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385
G + + Q + D+ +L G ++ G A+E +A
Sbjct: 186 GGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLA 226
|
Length = 237 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 109 bits (273), Expect = 5e-25
Identities = 73/224 (32%), Positives = 116/224 (51%), Gaps = 21/224 (9%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---- 224
+ +L G+T +++PGEV+AL+GPSGSGK+T+ LL L +PT GG + + P
Sbjct: 493 DVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQ-NLYQPT-GGQVLLDGVPLVQYDH 550
Query: 225 KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQ 284
L ++ V Q+ VLF +V+E + Y + K A D I E
Sbjct: 551 HYLHRQVALVGQEPVLFSG-SVRENIAYGLTDTPDEEIMAAAKAANAHDFIME--FPNGY 607
Query: 285 DTMIG--GSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA 342
DT +G GS +SGG+++R+ I ++ P +L LDE TS LD+ Q+LQ+
Sbjct: 608 DTEVGEKGSQ---LSGGQKQRIAIARALVRKPRVLILDEATSALDA----ECEQLLQESR 660
Query: 343 E-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385
A +TV+ H+ S + D++++L KGS++ G + M
Sbjct: 661 SRASRTVLLIAHRLS--TVERADQILVLKKGSVVEMGTHKQLME 702
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 8e-25
Identities = 67/223 (30%), Positives = 118/223 (52%), Gaps = 19/223 (8%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228
+K ++ I+ V PGE+ L+GP+G+GKTT ++ G L+EPT G IT+N P S+ +K
Sbjct: 14 DKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILG-LLEPT-EGEITWNGGPLSQEIK 71
Query: 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMI 288
++IG++ ++ L+P +TV++ L Y A L K + + LER +
Sbjct: 72 NRIGYLPEERGLYPKMTVEDQLKYLAEL-------KGMPKAEIQKKLQAW-LERLEIVGK 123
Query: 289 GGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLD--STTALRIVQMLQDIAEAGK 346
++ +S G ++++ + +I P LL LDEP SGLD + L+ + ++ E G
Sbjct: 124 KTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLK--DAIFELKEEGA 181
Query: 347 TVVTTIHQPS--SRLFHKFDKLILLGKGSLLYFGKASEAMAYF 387
T++ + H+ L D+L++L KG + +G + F
Sbjct: 182 TIIFSSHRMEHVEEL---CDRLLMLKKGQTVLYGTVEDIRRSF 221
|
Length = 300 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 102 bits (257), Expect = 1e-24
Identities = 67/221 (30%), Positives = 117/221 (52%), Gaps = 20/221 (9%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLK 228
+N + + GE L L+GPSGSGKTT + +++ RL+EPT G I + + L+
Sbjct: 17 VNNLNLEIAKGEFLVLIGPSGSGKTTTMKMIN-RLIEPT-SGEIFIDGEDIREQDPVELR 74
Query: 229 SKIGFVTQDDVLFPHLTVKETL-TYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTM 287
KIG+V Q LFPH+TV+E + LL+ P K++ +RA +++ +GL+ +
Sbjct: 75 RKIGYVIQQIGLFPHMTVEENIALVPKLLKWP----KEKIRERADELLALVGLDPAE--- 127
Query: 288 IGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GK 346
+ +SGG+++RV + + +P LL +DEP LD T ++ + + + + GK
Sbjct: 128 FADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGK 187
Query: 347 TVVTTIH--QPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385
T+V H + RL D++ ++ G ++ G E +
Sbjct: 188 TIVFVTHDIDEAFRL---ADRIAIMKNGEIVQVGTPDEILR 225
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 2e-24
Identities = 52/191 (27%), Positives = 97/191 (50%), Gaps = 21/191 (10%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS-----KSL 227
+N ++ V PGE++ L+GP+G+GKTTL NL++G +P+ G++ + + +
Sbjct: 20 VNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFY-KPS-SGTVIFRGRDITGLPPHRIA 77
Query: 228 KSKIGFVTQDDVLFPHLTVKE--------TLTYAALLRLPNTLTKQQK-EKRAIDVINEL 278
+ I Q LFP LTV E L + LL P ++++ +RA +++ +
Sbjct: 78 RLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFV 137
Query: 279 GLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQML 338
GL D G +S G+++R+ I + P LL LDEP +GL+ + +++
Sbjct: 138 GLGELADRPAG-----NLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELI 192
Query: 339 QDIAEAGKTVV 349
+++ + G +
Sbjct: 193 RELRDRGGVTI 203
|
Length = 250 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 2e-24
Identities = 68/225 (30%), Positives = 119/225 (52%), Gaps = 19/225 (8%)
Query: 168 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPY---- 223
+ IL+ I+ + PGEV+ ++G SGSGK+TL L+ G + + H
Sbjct: 13 DGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQR--FYVPENGRVLVDGHDLALAD 70
Query: 224 SKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKR---AIDVINELGL 280
L+ ++G V Q++VLF + ++++ + AL ++ + + + A D I+EL
Sbjct: 71 PAWLRRQVGVVLQENVLF-NRSIRDNI---ALADPGMSMERVIEAAKLAGAHDFISELPE 126
Query: 281 ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQD 340
DT++G G+SGG+R+R+ I +I NP +L DE TS LD + I++ + D
Sbjct: 127 G--YDTIVGEQGA-GLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHD 183
Query: 341 IAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385
I AG+TV+ H+ S+ D++I++ KG ++ G E +A
Sbjct: 184 IC-AGRTVIIIAHRLST--VKNADRIIVMEKGRIVEQGSHDELLA 225
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 98.2 bits (245), Expect = 2e-24
Identities = 46/133 (34%), Positives = 70/133 (52%), Gaps = 19/133 (14%)
Query: 197 TTLLNLLSGRLMEPTVGGSITYNDH-----PYSKSLKSKIGFVTQDDVLFPHLTVKETLT 251
+TLL L++G L++PT G+I + K L+ +IG V QD LFP LTV+E L
Sbjct: 1 STLLKLITG-LLQPT-SGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLF 58
Query: 252 YAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEII 311
+ L ++ + RA + + +GL D G+ SGG+++RV I ++
Sbjct: 59 FG--------LRDKEADARAEEALERVGLPDFLDREPVGTL----SGGQKQRVAIARALL 106
Query: 312 INPSLLFLDEPTS 324
P LL LDEPT+
Sbjct: 107 KKPKLLLLDEPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 2e-24
Identities = 60/185 (32%), Positives = 92/185 (49%), Gaps = 15/185 (8%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS---LKS 229
++G+ V GEV +GP+G+GKTT + +L+ L+ PT G+ + + ++
Sbjct: 9 VDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTT-LLRPT-SGTARVAGYDVVREPRKVRR 66
Query: 230 KIGFVTQDDVLFPHLTVKETLT-YAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMI 288
IG V Q + LT +E L L LP K + E+RA +++ L D
Sbjct: 67 SIGIVPQYASVDEDLTGRENLEMMGRLYGLP----KDEAEERAEELLELFELGEAADRP- 121
Query: 289 GGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTV 348
V SGG R+R+ I +I P +LFLDEPT+GLD T I ++ + E G T+
Sbjct: 122 ----VGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTI 177
Query: 349 VTTIH 353
+ T H
Sbjct: 178 LLTTH 182
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 3e-24
Identities = 78/272 (28%), Positives = 141/272 (51%), Gaps = 30/272 (11%)
Query: 121 FSDDDIPEDIEAGTRERPKFQTEPTLPIYLKFTDVTYKVILKGMTSSEEKDILNGITGSV 180
F+ D P + + GTR + + + ++F +VT++ ++ L+ I+ +
Sbjct: 308 FTLLDSPPEKDTGTRAIERARGD------VEFRNVTFRY------PGRDRPALDSISLVI 355
Query: 181 NPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP---YS-KSLKSKIGFVTQ 236
PGE +AL+G SGSGK+TL+NL+ R EP G I + H Y+ SL+ ++ V+Q
Sbjct: 356 EPGETVALVGRSGSGKSTLVNLIP-RFYEPD-SGQILLDGHDLADYTLASLRRQVALVSQ 413
Query: 237 DDVLFPHLTVKETLTYAALLRLPNT-LTKQQKEKRAIDVINEL--GLERCQDTMIGGSFV 293
D VLF T+ + Y + + + A D +++L GL DT IG + V
Sbjct: 414 DVVLFND-TIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGL----DTPIGENGV 468
Query: 294 RGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIH 353
+SGG+R+R+ I ++ + +L LDE TS LD+ + + L+ + + G+T + H
Sbjct: 469 L-LSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQ-GRTTLVIAH 526
Query: 354 QPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385
+ S+ K D+++++ G ++ G +E +A
Sbjct: 527 RLST--IEKADRIVVMDDGRIVERGTHNELLA 556
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 100 bits (250), Expect = 3e-24
Identities = 55/165 (33%), Positives = 83/165 (50%), Gaps = 14/165 (8%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP-TVGGSITYNDHPYSK--SLK 228
+L + ++ GE++ LMGPSG GK+TLL+ + G L + G + N+ + +
Sbjct: 17 LLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQ 76
Query: 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMI 288
+IG + QD +LFPHL+V + L +A LP TL + A + GL+
Sbjct: 77 RQIGILFQDALLFPHLSVGQNLLFA----LPATLKGNARRNAANAALERSGLDGAFH--- 129
Query: 289 GGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALR 333
+SGG+R RV + ++ P L LDEP S LD ALR
Sbjct: 130 --QDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDV--ALR 170
|
Length = 213 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 4e-24
Identities = 56/190 (29%), Positives = 102/190 (53%), Gaps = 13/190 (6%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDH-----PY 223
++ ++N ++ VN GE++ L+GP+G+GKTT ++ G L+ P G I +D P
Sbjct: 16 KRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVG-LVRPD-SGKILLDDEDITKLPM 73
Query: 224 SKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC 283
K + IG++ Q+ +F LTV++ + A L L K ++++ ++ E +
Sbjct: 74 HKRARLGIGYLPQEASIFRKLTVEDNIM-AVLEIREKDLKKAERKEELDALLEEFHITHL 132
Query: 284 QDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE 343
+D+ S +SGGER+RV I + NP + LDEP +G+D + I ++++ + +
Sbjct: 133 RDSK-AYS----LSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKD 187
Query: 344 AGKTVVTTIH 353
G V+ T H
Sbjct: 188 RGIGVLITDH 197
|
Length = 243 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 100 bits (250), Expect = 7e-24
Identities = 53/159 (33%), Positives = 79/159 (49%), Gaps = 14/159 (8%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL--KS 229
L+G++ + GE L+GPSG GKTTLL L++G PT G I + + K
Sbjct: 15 ALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAG-FETPT-SGEILLDGKDITNLPPHKR 72
Query: 230 KIGFVTQDDVLFPHLTVKETLTYA-ALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMI 288
+ V Q+ LFPHLTV E + + L +LP K ++ A+D++ G
Sbjct: 73 PVNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIK-ERVAEALDLVQLEGYAN------ 125
Query: 289 GGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLD 327
+SGG+++RV I ++ P +L LDEP LD
Sbjct: 126 --RKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALD 162
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 100 bits (250), Expect = 9e-24
Identities = 69/230 (30%), Positives = 117/230 (50%), Gaps = 30/230 (13%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYN------------ 219
+L+G+ SV GE +AL+GPSGSGK+T+L +L +EP G I
Sbjct: 15 VLDGLNFSVAAGEKVALIGPSGSGKSTILRIL--MTLEPIDEGQIQVEGEQLYHMPGRNG 72
Query: 220 -----DHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDV 274
D + + +++KIG V Q LFPH TV + +T A +L L + + + EKRA+++
Sbjct: 73 PLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVL--GMARAEAEKRAMEL 130
Query: 275 INELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRI 334
++ +GL D +SGG+++RV I + + P ++ DE TS LD +
Sbjct: 131 LDMVGLADKAD-----HMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEV 185
Query: 335 VQMLQDIA-EAGKTVVTTIHQPSSRLFHKF-DKLILLGKGSLLYFGKASE 382
+ +++ +A E T++ H+ +F D++ KG ++ GK E
Sbjct: 186 LNVIRRLASEHDLTMLLVTHE--MGFAREFADRVCFFDKGRIVEQGKPDE 233
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 104 bits (263), Expect = 9e-24
Identities = 74/232 (31%), Positives = 122/232 (52%), Gaps = 32/232 (13%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP---YSKS-L 227
+L G++ + GE +AL+G +G GK+TLL LL+ R +P G I N P YS++ L
Sbjct: 355 VLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLT-RAWDPQ-QGEILLNGQPIADYSEAAL 412
Query: 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTM 287
+ I V+Q LF T+++ L AA ++ I+V+ ++GLE+ +
Sbjct: 413 RQAISVVSQRVHLFSA-TLRDNLLLAA---------PNASDEALIEVLQQVGLEKLLEDD 462
Query: 288 IG-----GSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA 342
G G R +SGGE++R+ I ++ + LL LDEPT GLD+ T +I+++L + A
Sbjct: 463 KGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHA 522
Query: 343 EAGKTVVTTIHQPSSRLF--HKFDKLILLGKGSLLYFGKASEAMA----YFS 388
KTV+ H RL +FD++ ++ G ++ G E +A Y+
Sbjct: 523 -QNKTVLMITH----RLTGLEQFDRICVMDNGQIIEQGTHQELLAQQGRYYQ 569
|
Length = 574 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 99 bits (249), Expect = 1e-23
Identities = 64/223 (28%), Positives = 125/223 (56%), Gaps = 15/223 (6%)
Query: 168 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDH-----P 222
+ + ++ ++ +VN GE++ L+GP+G+GKTT ++ G + P G+I +D P
Sbjct: 14 KGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVG--IVPRDAGNIIIDDEDISLLP 71
Query: 223 YSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER 282
+ IG++ Q+ +F L+V + L A+L++ + L+ +Q+E RA +++ E +E
Sbjct: 72 LHARARRGIGYLPQEASIFRRLSVYDNLM--AVLQIRDDLSAEQREDRANELMEEFHIEH 129
Query: 283 CQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA 342
+D+M G S +SGGER+RV I + NP + LDEP +G+D + + I ++++ +
Sbjct: 130 LRDSM-GQS----LSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLR 184
Query: 343 EAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385
++G V+ T H L ++ ++ +G L+ G +E +
Sbjct: 185 DSGLGVLITDHNVRETL-AVCERAYIVSQGHLIAHGTPTEILQ 226
|
Length = 241 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 99.0 bits (247), Expect = 1e-23
Identities = 59/186 (31%), Positives = 99/186 (53%), Gaps = 16/186 (8%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---SLKS 229
+ G++ V GE+ L+GP+G+GKTT + +L+ L++PT G T H + ++
Sbjct: 16 VRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTT-LLKPT-SGRATVAGHDVVREPREVRR 73
Query: 230 KIGFVTQDDVLFPHLTVKETL-TYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMI 288
+IG V QD + LT E L +A L +P ++ R ++++ +GL D +
Sbjct: 74 RIGIVFQDLSVDDELTGWENLYIHARLYGVPGAERRE----RIDELLDFVGLLEAADRL- 128
Query: 289 GGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI-AEAGKT 347
V+ SGG R+R+ I ++ P +LFLDEPT GLD T + + ++ + E G T
Sbjct: 129 ----VKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMT 184
Query: 348 VVTTIH 353
++ T H
Sbjct: 185 ILLTTH 190
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 103 bits (260), Expect = 1e-23
Identities = 74/235 (31%), Positives = 114/235 (48%), Gaps = 34/235 (14%)
Query: 168 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSI--------TYN 219
+K L GI+ S+ GE LA++GPSGSGK+TL L+ G + P GS+ ++
Sbjct: 329 GKKPTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVG--IWPPTSGSVRLDGADLKQWD 386
Query: 220 DHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQ-----KEKRAIDV 274
+ K IG++ QD LFP TV E + R ++ K ++
Sbjct: 387 RETFGKH----IGYLPQDVELFPG-TVAENIA-----RFGENADPEKIIEAAKLAGVHEL 436
Query: 275 INELGLERCQDTMIG--GSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTAL 332
I L L DT+IG G+ +SGG+R+R+ + + +P L+ LDEP S LD
Sbjct: 437 I--LRLPDGYDTVIGPGGA---TLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQ 491
Query: 333 RIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYF 387
+ ++ + G TVV H+PS L DK+++L G + FG+ E +A
Sbjct: 492 ALANAIKALKARGITVVVITHRPS--LLGCVDKILVLQDGRIARFGERDEVLAKL 544
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 102 bits (255), Expect = 1e-23
Identities = 60/209 (28%), Positives = 96/209 (45%), Gaps = 24/209 (11%)
Query: 185 VLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYND---HPYSKSL-----KSKIGFVTQ 236
+ AL GPSGSGKT+L+N+++G L P G I N K + K +IG+V Q
Sbjct: 26 ITALFGPSGSGKTSLINMIAG-LTRPDEG-RIELNGRVLVDAEKGIFLPPEKRRIGYVFQ 83
Query: 237 DDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGV 296
D LFPH TV+ L Y + + + + + + LG+E D +
Sbjct: 84 DARLFPHYTVRGNLRYGM------WKSMRAQFDQLVAL---LGIEHLLDRY-----PGTL 129
Query: 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPS 356
SGGE++RV IG ++ P LL +DEP + LD I+ L+ + + + +
Sbjct: 130 SGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYVSHSL 189
Query: 357 SRLFHKFDKLILLGKGSLLYFGKASEAMA 385
+ D++++L G + G E
Sbjct: 190 DEVLRLADRVVVLENGKVKASGPLEEVWG 218
|
Length = 352 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 99.1 bits (247), Expect = 2e-23
Identities = 68/192 (35%), Positives = 100/192 (52%), Gaps = 19/192 (9%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTL---LNLL----SGRLMEPTVGGSITYNDHPYSK 225
L IT GE L L+GPSG+GK++L LNLL SG L G ++ P K
Sbjct: 18 LFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLN--IAGNHFDFSKTPSDK 75
Query: 226 S---LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER 282
+ L+ +G V Q L+PHLTV+E L A L L+K Q RA ++ L L+
Sbjct: 76 AIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVL--GLSKDQALARAEKLLKRLRLKP 133
Query: 283 CQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA 342
D + +SGG+++RV I +++ P +L DEPT+ LD +IV +++++A
Sbjct: 134 YAD-----RYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELA 188
Query: 343 EAGKTVVTTIHQ 354
E G T V H+
Sbjct: 189 ETGITQVIVTHE 200
|
Length = 242 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 99.3 bits (248), Expect = 2e-23
Identities = 62/224 (27%), Positives = 105/224 (46%), Gaps = 21/224 (9%)
Query: 168 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225
K IL ++ VNPGE A++GP+G+GKTTLL+LL+G P G +T + K
Sbjct: 42 NGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGE--HPPSSGDVTLLGRRFGKGE 99
Query: 226 ---SLKSKIGFVT--QDDVLFPHLTVKETLT---YAALLRLPNTLTKQQKEKRAIDVINE 277
L+ +IG V+ + TV++ + +A++ LT + A ++
Sbjct: 100 TIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLA-AAQWLLEL 158
Query: 278 LGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQM 337
LG + + +S GE++RV I ++ +P LL LDEP GLD +++
Sbjct: 159 LGAKH-----LADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNR 213
Query: 338 LQDIA--EAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379
L+++A ++ H F +LL +G ++ GK
Sbjct: 214 LEELAASPGAPALLFVTHHAEEIP-PCFTHRLLLKEGEVVAQGK 256
|
Length = 257 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 99.4 bits (248), Expect = 2e-23
Identities = 66/247 (26%), Positives = 122/247 (49%), Gaps = 31/247 (12%)
Query: 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME 209
++ +++Y + + +L+G++ + PGEVLA++GP+G+GK+TLL LSG +
Sbjct: 2 IRAENLSYSL--------AGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGE-LS 52
Query: 210 PTVGGSITYNDHPYS----KSLKSKIGFVTQDDVL-FPHLTVKETLTYAALLRLPNTLTK 264
P G +T N P + + L + Q+ L FP TV+E + + R+P+ +
Sbjct: 53 PD-SGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFP-FTVQEVV---QMGRIPHRSGR 107
Query: 265 QQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV------CIGNEIIINPSLLF 318
+ +E I L + + G R +SGGE++RV + + LF
Sbjct: 108 EPEEDER---IAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLF 164
Query: 319 LDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKF-DKLILLGKGSLLYF 377
LDEPTS LD +++ + +A G V+ +H + L ++ D+++LL +G ++
Sbjct: 165 LDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLN--LAAQYADRIVLLHQGRVIAS 222
Query: 378 GKASEAM 384
G + +
Sbjct: 223 GSPQDVL 229
|
Length = 259 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 99.4 bits (248), Expect = 3e-23
Identities = 71/221 (32%), Positives = 118/221 (53%), Gaps = 26/221 (11%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP--YSKS---- 226
L GI GE++AL+GP+G+GK+TL +G +++PT G + P Y K
Sbjct: 18 LKGINFKAEKGEMVALLGPNGAGKSTLFLHFNG-ILKPT-SGEVLIKGEPIKYDKKSLLE 75
Query: 227 LKSKIGFVTQ--DDVLF-PHLTVKETLTYAAL-LRLPNTLTKQQKEKRAIDVINELGLER 282
++ +G V Q DD LF P TV+E + + L L L K++ EKR + + +G+E
Sbjct: 76 VRKTVGIVFQNPDDQLFAP--TVEEDVAFGPLNLGLS----KEEVEKRVKEALKAVGMEG 129
Query: 283 CQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA 342
++ +SGG++KRV I + + P ++ LDEPTSGLD A +I+++L D+
Sbjct: 130 FENKP-----PHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLN 184
Query: 343 EAGKTVVTTIHQPSSRLFHKF-DKLILLGKGSLLYFGKASE 382
+ G T++ + H L + DK+ ++ G ++ G E
Sbjct: 185 KEGITIIISTHDVD--LVPVYADKVYVMSDGKIIKEGTPKE 223
|
Length = 275 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 98.9 bits (247), Expect = 3e-23
Identities = 57/194 (29%), Positives = 96/194 (49%), Gaps = 27/194 (13%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKS--- 229
+N ++ V GE+ +MG SGSGK+TLL ++ RL+EPT G + + + +
Sbjct: 40 VNDVSLDVREGEIFVIMGLSGSGKSTLLRCIN-RLIEPT-SGKVLIDGQDIAAMSRKELR 97
Query: 230 -----KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQ 284
KI V Q L PH TV E + + ++ + + ++E+RA + + +GLE +
Sbjct: 98 ELRRKKISMVFQSFALLPHRTVLENVAFGLEVQ---GVPRAEREERAAEALELVGLEGWE 154
Query: 285 DTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI--- 341
+ +SGG ++RV + + ++P +L +DE S LD I + +QD
Sbjct: 155 H-----KYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPL----IRREMQDELLR 205
Query: 342 --AEAGKTVVTTIH 353
AE KT+V H
Sbjct: 206 LQAELQKTIVFITH 219
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 97.9 bits (244), Expect = 4e-23
Identities = 63/213 (29%), Positives = 103/213 (48%), Gaps = 14/213 (6%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYN--DHPYSKSLKSK 230
L+ + V G ++AL+GPSGSGK+TLL +++G L +P G I N D + K
Sbjct: 16 LDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAG-LEQPD-SGRIRLNGQDATRVHARDRK 73
Query: 231 IGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGG 290
IGFV Q LF HLTV++ + + +R + + + EL LE Q +G
Sbjct: 74 IGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKAR-------VEEL-LELVQLEGLGD 125
Query: 291 SFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGK-TVV 349
+ +SGG+R+RV + + + P +L LDEP LD+ + L+ + + T V
Sbjct: 126 RYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTV 185
Query: 350 TTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382
H + D+++++ G + G E
Sbjct: 186 FVTHDQEEAM-EVADRIVVMSNGKIEQIGSPDE 217
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 96.9 bits (242), Expect = 4e-23
Identities = 60/189 (31%), Positives = 100/189 (52%), Gaps = 18/189 (9%)
Query: 168 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS-KS 226
+ +IL+ ++ + GE++AL G +G+GKTTL +L+G L++ + GSI N P K
Sbjct: 11 KGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAG-LIKES-SGSILLNGKPIKAKE 68
Query: 227 LKSKIGFVTQD--DVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQ 284
+ IG+V QD LF +V+E L LL L ++ A V+ +L L +
Sbjct: 69 RRKSIGYVMQDVDYQLFTD-SVREEL----LLGLKELDAGNEQ---AETVLKDLDLYALK 120
Query: 285 DTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA 344
+ +SGG+++R+ I ++ LL DEPTSGLD R+ ++++++A
Sbjct: 121 E-----RHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQ 175
Query: 345 GKTVVTTIH 353
GK V+ H
Sbjct: 176 GKAVIVITH 184
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 96.7 bits (241), Expect = 4e-23
Identities = 61/194 (31%), Positives = 103/194 (53%), Gaps = 19/194 (9%)
Query: 168 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP--YSK 225
++L G+ + GEVLAL+G +G+GK+TLL L+G L+ P G++ + P YS+
Sbjct: 3 GGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNG-LLRPQ-SGAVLIDGEPLDYSR 60
Query: 226 S----LKSKIGFVTQ--DDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG 279
+ ++G V Q DD LF V + + + L L L++ + E+R + + +G
Sbjct: 61 KGLLERRQRVGLVFQDPDDQLF-AADVDQDVAFG-PLNL--GLSEAEVERRVREALTAVG 116
Query: 280 LERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQ 339
++ +SGGE+KRV I + + P +L LDEPT+GLD +++ +L+
Sbjct: 117 ASGLRERPT-----HCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILR 171
Query: 340 DIAEAGKTVVTTIH 353
+ G TVV + H
Sbjct: 172 RLRAEGMTVVISTH 185
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 98.2 bits (245), Expect = 4e-23
Identities = 69/198 (34%), Positives = 100/198 (50%), Gaps = 29/198 (14%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTL---LNLL----SGRLMEPTVGGSITYNDHPYS 224
L IT GE L L+GPSG+GK++L LNLL SG L +I N +S
Sbjct: 17 ALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTL-------NIAGNHFDFS 69
Query: 225 K--------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVIN 276
K L+ +G V Q L+PHLTV++ L A L L+K Q RA ++
Sbjct: 70 KTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVL--GLSKDQALARAEKLLE 127
Query: 277 ELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQ 336
L L+ D F +SGG+++RV I +++ P +L DEPT+ LD +IV
Sbjct: 128 RLRLKPYAD-----RFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVS 182
Query: 337 MLQDIAEAGKTVVTTIHQ 354
+++++AE G T V H+
Sbjct: 183 IIRELAETGITQVIVTHE 200
|
Length = 242 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 100 bits (250), Expect = 5e-23
Identities = 70/217 (32%), Positives = 104/217 (47%), Gaps = 29/217 (13%)
Query: 182 PG-EVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKS--------KIG 232
PG V A+ G SGSGKTTL+ L++G L P G I N S K +IG
Sbjct: 21 PGQGVTAIFGRSGSGKTTLIRLIAG-LTRPD-EGEIVLNGRTLFDSRKGIFLPPEKRRIG 78
Query: 233 FVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAID---VINELGLERCQDTMIG 289
+V Q+ LFPHL+V+ L Y + + + +R I VI LG+ +
Sbjct: 79 YVFQEARLFPHLSVRGNLRYG--------MKRARPSERRISFERVIELLGIGH-----LL 125
Query: 290 GSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI-AEAGKTV 348
G +SGGE++RV IG ++ +P LL +DEP + LD I+ L+ + AE G +
Sbjct: 126 GRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPI 185
Query: 349 VTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385
+ H L D++++L G + G +E A
Sbjct: 186 LYVSHSLQEVL-RLADRVVVLEDGRVAAAGPIAEVWA 221
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 97.4 bits (243), Expect = 6e-23
Identities = 67/224 (29%), Positives = 113/224 (50%), Gaps = 30/224 (13%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK---S 229
L+ ++ +V PG +AL+GP+G+GK+TL +LL+ + G I+ H ++ + +
Sbjct: 17 LDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQE--GQISVAGHDLRRAPRAALA 74
Query: 230 KIGFVTQDDVLFPHLTVKETLTY-AALLRLPNTLTKQQKEKRAIDVINELGL-ERCQDTM 287
++G V Q L L+V++ L Y AAL L + + R +++ LGL ER
Sbjct: 75 RLGVVFQQPTLDLDLSVRQNLRYHAALHGLS----RAEARARIAELLARLGLAER----- 125
Query: 288 IGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQD-IAEAGK 346
VR ++GG R+RV I ++ P+LL LDEPT GLD + I ++ + G
Sbjct: 126 -ADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAITAHVRALARDQGL 184
Query: 347 TVVTTIH-----QPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385
+V+ H + D+L++L +G +L G A+E
Sbjct: 185 SVLWATHLVDEIEAD-------DRLVVLHRGRVLADGAAAELRG 221
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 97.2 bits (242), Expect = 6e-23
Identities = 71/207 (34%), Positives = 104/207 (50%), Gaps = 35/207 (16%)
Query: 171 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKS- 229
D+L+ ++ S+ GE++A++G SGSGK+TLL+LL G L PT G + +N P SK L S
Sbjct: 23 DVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGG-LDTPT-SGDVIFNGQPMSK-LSSA 79
Query: 230 --------KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE 281
K+GF+ Q L P T E A+ L + RA++++ +GLE
Sbjct: 80 AKAELRNQKLGFIYQFHHLLPDFTALEN---VAMPLLIGKKKPAEINSRALEMLAAVGLE 136
Query: 282 RCQDTMIGGSFVRG------VSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIV 335
R +SGGER+RV I ++ NP L+ DEPT LD+ A I
Sbjct: 137 H-----------RANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIF 185
Query: 336 QMLQDIAEAGKT---VVTTIHQPSSRL 359
Q+L ++ T VVT Q + R+
Sbjct: 186 QLLGELNRLQGTAFLVVTHDLQLAKRM 212
|
Length = 233 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 97.1 bits (242), Expect = 9e-23
Identities = 65/193 (33%), Positives = 108/193 (55%), Gaps = 21/193 (10%)
Query: 171 DILNGITGSVNPGEVLALMGPSGSGKTTLL---NLL----SGRLMEPTVGGSITYNDHPY 223
+L+ I +++ GEV+ ++GPSGSGK+TLL N L SG L+ V G +
Sbjct: 15 QVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLI---VDGLKVNDPKVD 71
Query: 224 SKSLKSKIGFVTQDDVLFPHLTVKETLTYAAL-LRLPNTLTKQQKEKRAIDVINELGL-E 281
+ ++ + G V Q LFPHLT E + + L +R +K++ EK+A +++ ++GL E
Sbjct: 72 ERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVR---GASKEEAEKQARELLAKVGLAE 128
Query: 282 RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI 341
R + +SGG+++RV I + + P L+ DEPTS LD +++++QD+
Sbjct: 129 R------AHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDL 182
Query: 342 AEAGKTVVTTIHQ 354
AE G T+V H+
Sbjct: 183 AEEGMTMVIVTHE 195
|
Length = 240 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 95.0 bits (237), Expect = 9e-23
Identities = 57/213 (26%), Positives = 88/213 (41%), Gaps = 54/213 (25%)
Query: 164 MTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP- 222
E +L ++ S+ PGE LA++GPSGSGK+TL L+ G L+ PT G + +
Sbjct: 9 RYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILG-LLRPT-SGRVRLDGADI 66
Query: 223 ---YSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG 279
L +G++ QDD LF ++ E N L
Sbjct: 67 SQWDPNELGDHVGYLPQDDELFSG-SIAE-----------NIL----------------- 97
Query: 280 LERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQ 339
SGG+R+R+ + + NP +L LDEP S LD + Q +
Sbjct: 98 -----------------SGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIA 140
Query: 340 DIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKG 372
+ AG T + H+P D++++L G
Sbjct: 141 ALKAAGATRIVIAHRPE--TLASADRILVLEDG 171
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 97.1 bits (242), Expect = 1e-22
Identities = 67/204 (32%), Positives = 106/204 (51%), Gaps = 13/204 (6%)
Query: 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKS 229
K L I ++ GE+L ++GPSG GKTTLLNL++G + GSIT + P
Sbjct: 14 KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAG-FVPYQ-HGSITLDGKPVEGPGAE 71
Query: 230 KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIG 289
+ G V Q++ L P V++ + + L+L + K Q+ + A ++ ++GLE
Sbjct: 72 R-GVVFQNEGLLPWRNVQDNVAFG--LQLAG-VEKMQRLEIAHQMLKKVGLEG-----AE 122
Query: 290 GSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI-AEAGKTV 348
++ +SGG+R+RV I + NP LL LDEP LD+ T ++ +L + E GK V
Sbjct: 123 KRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQV 182
Query: 349 VTTIHQPSSRLFHKFDKLILLGKG 372
+ H +F + L+LL G
Sbjct: 183 LLITHDIEEAVFMATE-LVLLSPG 205
|
Length = 255 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 97.9 bits (244), Expect = 2e-22
Identities = 52/189 (27%), Positives = 100/189 (52%), Gaps = 16/189 (8%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPY---SK 225
++ L+ ++ G ++ +GP+G+GK+T + +++G L P GS+ K
Sbjct: 14 TQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYL--PPDSGSVQVCGEDVLQNPK 71
Query: 226 SLKSKIGFVTQDDVLFPHLTVKETLTY-AALLRLPNTLTKQQKEKRAIDVINELGLERCQ 284
++ IG++ + + L+ + V+E L + A + + L KQ+ E+ +I +GL Q
Sbjct: 72 EVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEE----MIELVGLRPEQ 127
Query: 285 DTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA 344
IG +S G R+RV + +I +P +L LDEPT+GLD + I ++++I +
Sbjct: 128 HKKIGQ-----LSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKD 182
Query: 345 GKTVVTTIH 353
KT++ + H
Sbjct: 183 -KTIILSTH 190
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 96.4 bits (240), Expect = 2e-22
Identities = 80/253 (31%), Positives = 122/253 (48%), Gaps = 50/253 (19%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLL---NLLSGRLMEPTVGGSITYNDHP-YS 224
+K LN ++ P E+ AL+GPSGSGK+TLL N ++ E T+ GSI YN H YS
Sbjct: 17 KKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYS 76
Query: 225 K-----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG 279
L+ +IG V Q FP +++ E + Y LRL K K+K+ +D E
Sbjct: 77 PRTDTVDLRKEIGMVFQQPNPFP-MSIYENVVYG--LRL-----KGIKDKQVLDEAVEKS 128
Query: 280 L----------ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDST 329
L +R D+ +G +SGG+++RVCI + +P ++ LDEPTS LD
Sbjct: 129 LKGASIWDEVKDRLHDSALG------LSGGQQQRVCIARVLATSPKIILLDEPTSALDPI 182
Query: 330 TALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFS 388
+A +I + L + + +VT Q +SR+ D+ G L+ +
Sbjct: 183 SAGKIEETLLGLKDDYTMLLVTRSMQQASRI---SDRTGFFLDGDLIEYND--------- 230
Query: 389 SIGCSPQIAMNPA 401
+ Q+ MNP
Sbjct: 231 ----TKQMFMNPK 239
|
Length = 252 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 96.6 bits (240), Expect = 2e-22
Identities = 62/204 (30%), Positives = 109/204 (53%), Gaps = 27/204 (13%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---- 224
E ++L G++ N G+V++++G SGSGK+T L ++ +E GSI N +
Sbjct: 17 EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCIN--FLEKPSEGSIVVNGQTINLVRD 74
Query: 225 -------------KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRA 271
+ L++++ V Q L+ H+TV E + A + L L+KQ+ +RA
Sbjct: 75 KDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL--GLSKQEARERA 132
Query: 272 IDVINELGL-ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTT 330
+ + ++G+ ER Q G + +SGG+++RV I + + P +L DEPTS LD
Sbjct: 133 VKYLAKVGIDERAQ-----GKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPEL 187
Query: 331 ALRIVQMLQDIAEAGKTVVTTIHQ 354
+++++Q +AE GKT+V H+
Sbjct: 188 VGEVLRIMQQLAEEGKTMVVVTHE 211
|
Length = 257 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 95.0 bits (237), Expect = 2e-22
Identities = 64/204 (31%), Positives = 98/204 (48%), Gaps = 24/204 (11%)
Query: 159 VILKGMTSS-EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVG---- 213
V L+ +T L+ + + GE + L+GPSG GKTT L +++G L EPT G
Sbjct: 1 VELENVTKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAG-LEEPTSGRIYI 59
Query: 214 GSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAID 273
G D P I V Q+ L+PH+TV + + + LR + K + ++R +
Sbjct: 60 GGRDVTDLPPKDR---DIAMVFQNYALYPHMTVYDNIAFGLKLR---KVPKDEIDERVRE 113
Query: 274 VINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALR 333
V L +E D + +SGG+R+RV +G I+ P + +DEP S LD+ LR
Sbjct: 114 VAELLQIEHLLD-----RKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDA--KLR 166
Query: 334 IVQMLQDI----AEAGKTVVTTIH 353
VQM ++ G T + H
Sbjct: 167 -VQMRAELKRLQQRLGTTTIYVTH 189
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 95.6 bits (238), Expect = 3e-22
Identities = 76/243 (31%), Positives = 121/243 (49%), Gaps = 38/243 (15%)
Query: 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME 209
++F +V+Y SS K+IL I+ G + ++GPSG+GK+TL+ L++ RL++
Sbjct: 4 IEFKEVSY--------SSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLIN-RLID 54
Query: 210 PTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQ 265
PT GSI + L+ KIG V Q LF TVK+ + Y +L
Sbjct: 55 PT-EGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFEG-TVKDNIEYGPML--------- 103
Query: 266 QKEKRAIDV---INELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEP 322
K ++ +DV ++ +GL + T V+ +SGGE +RV I + NP +L LDEP
Sbjct: 104 -KGEKNVDVEYYLSIVGLNKEYAT----RDVKNLSGGEAQRVSIARTLANNPEVLLLDEP 158
Query: 323 TSGLDSTTALRIVQMLQDIAEA-GKTVVTTIH--QPSSRLFHKFDKLILLGKGSLLYFGK 379
TS LD T+ I +++ + TV+ H + + R+ D L KG L+ + K
Sbjct: 159 TSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRI---GDYTAFLNKGILVEYAK 215
Query: 380 ASE 382
+
Sbjct: 216 TYD 218
|
Length = 241 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 99.7 bits (249), Expect = 4e-22
Identities = 65/198 (32%), Positives = 108/198 (54%), Gaps = 19/198 (9%)
Query: 179 SVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS----KSLKSKIGFV 234
+V PGE +AL+GPSG+GK+TLLNLL G ++PT GSI N P + S + +I +V
Sbjct: 344 TVPPGERVALVGPSGAGKSTLLNLLLG-FVDPT-EGSIAVNGVPLADADADSWRDQIAWV 401
Query: 235 TQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDV-INEL--GLERCQDTMIGGS 291
Q LF T+ E + L P+ + + + ++E L + DT IG
Sbjct: 402 PQHPFLFAG-TIAENI----RLARPDA-SDAEIREALERAGLDEFVAALPQGLDTPIGEG 455
Query: 292 FVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTT 351
G+SGG+ +R+ + + + LL LDEPT+ LD+ T +++ L+ +A+ G+TV+
Sbjct: 456 -GAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEVLEALRALAQ-GRTVLLV 513
Query: 352 IHQPSSRLFHKFDKLILL 369
H+ + D++++L
Sbjct: 514 THRLALA--ALADRIVVL 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 94.2 bits (234), Expect = 5e-22
Identities = 62/185 (33%), Positives = 100/185 (54%), Gaps = 21/185 (11%)
Query: 179 SVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSK--IGFVTQ 236
+V GE++A+MGPSG+GK+TLLNL++G +EP GSI ND ++ + + + Q
Sbjct: 20 NVADGEIVAIMGPSGAGKSTLLNLIAG-FIEP-ASGSIKVNDQSHTGLAPYQRPVSMLFQ 77
Query: 237 DDVLFPHLTVKETLTYAALLRLPN-TLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRG 295
++ LF HLTV++ + L P L +Q+EK +D ++G+ D +
Sbjct: 78 ENNLFAHLTVRQNI---GLGLHPGLKLNAEQQEK-VVDAAQQVGIADYLDRLPE-----Q 128
Query: 296 VSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA----EAGKTVVTT 351
+SGG+R+RV + ++ +L LDEP S LD LR +ML + E +T++
Sbjct: 129 LSGGQRQRVALARCLVRPNPILLLDEPFSALDP--LLR-EEMLALVKQLCSERQRTLLMV 185
Query: 352 IHQPS 356
H S
Sbjct: 186 THHLS 190
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 94.5 bits (235), Expect = 5e-22
Identities = 70/229 (30%), Positives = 120/229 (52%), Gaps = 18/229 (7%)
Query: 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME 209
+KF +VT+ + + +L ++ +++PGEV AL+GPSGSGK+T++ LL +
Sbjct: 12 VKFQNVTF-----AYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLE-NFYQ 65
Query: 210 PTVGGSITYNDHPYS----KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQ 265
P GG + + P S K L SK+ V Q+ VLF ++++ + Y + +
Sbjct: 66 PQ-GGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFAR-SLQDNIAYGLQSCSFECVKEA 123
Query: 266 QKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSG 325
++ A I+EL + GS +SGG+++RV I +I NP +L LDE TS
Sbjct: 124 AQKAHAHSFISELASGYDTEVGEKGSQ---LSGGQKQRVAIARALIRNPQVLILDEATSA 180
Query: 326 LDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374
LD+ + ++ Q L D E +TV+ H+ S + D++++L G +
Sbjct: 181 LDAESEQQVQQALYDWPER-RTVLVIAHRLS--TVERADQILVLDGGRI 226
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 97.2 bits (242), Expect = 6e-22
Identities = 63/238 (26%), Positives = 113/238 (47%), Gaps = 33/238 (13%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVG-----GSITYNDHP--YSK 225
+N ++ GE+ +MG SGSGK+T + +L+ RL+EPT G G P +
Sbjct: 9 VNDADLAIAKGEIFVIMGLSGSGKSTTVRMLN-RLIEPTAGQIFIDGENIMKQSPVELRE 67
Query: 226 SLKSKIGFVTQDDVLFPHLTVKETLTYA-ALLRLPNTLTKQQKEKRAIDVINELGLERCQ 284
+ KIG V Q LFPH+T+ + + LL P +Q+++++A++++ +GLE +
Sbjct: 68 VRRKKIGMVFQQFALFPHMTILQNTSLGPELLGWP----EQERKEKALELLKLVGLEEYE 123
Query: 285 DTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI-AE 343
+ +SGG ++RV + + P +L +DE S LD + L+ + A
Sbjct: 124 H-----RYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQAT 178
Query: 344 AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIGCSPQIAMNPA 401
KT+V H + D+++++ G ++ +G +I NPA
Sbjct: 179 LQKTIVFITHDLDEAI-RIGDRIVIMKAGEIV-------------QVGTPDEILRNPA 222
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 95.0 bits (237), Expect = 6e-22
Identities = 67/222 (30%), Positives = 96/222 (43%), Gaps = 37/222 (16%)
Query: 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME 209
L+ D+ +V +K+IL G+ +V GEV A+MGP+GSGK+TL + G
Sbjct: 4 LEIKDLHVEV-------EGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKY 56
Query: 210 PTVGGSITYNDH------PYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLT 263
G I ++ P ++ I Q V P +T + L A R
Sbjct: 57 EVTEGEILFDGEDILELSPDERARAG-IFLAFQYPVEIPGVTNSDFLRAAMNARRGARGI 115
Query: 264 KQQKEKRAIDVINELGLERCQDTMIGGSFV-RGV----SGGERKRVCIGNEI----IINP 314
+ K + LGL+ F+ R V SGGE+KR NEI ++ P
Sbjct: 116 LPEFIKELKEKAELLGLDE--------EFLERYVNEGFSGGEKKR----NEILQLLLLEP 163
Query: 315 SLLFLDEPTSGLDSTTALRIVQM-LQDIAEAGKTVVTTIHQP 355
L LDEP SGLD AL+IV + + E G+ V+ H
Sbjct: 164 KLAILDEPDSGLD-IDALKIVAEGINALREEGRGVLIITHYQ 204
|
Length = 251 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 93.7 bits (233), Expect = 7e-22
Identities = 63/203 (31%), Positives = 101/203 (49%), Gaps = 22/203 (10%)
Query: 183 GEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYN--DHPYSKSLKSKIGFVTQDDVL 240
GE+ A++GPSGSGK+TLLNL++G E G + N D + + + Q++ L
Sbjct: 24 GEITAIVGPSGSGKSTLLNLIAG--FETPQSGRVLINGVDVTAAPPADRPVSMLFQENNL 81
Query: 241 FPHLTVKETLTYAALLRLPN-TLTKQQKEKRAIDVINELGLERCQDTMIGGSFVR---GV 296
F HLTV++ + L P LT + ++ AI+V L R + G R +
Sbjct: 82 FAHLTVEQNV---GLGLSPGLKLTAEDRQ--AIEVA----LAR---VGLAGLEKRLPGEL 129
Query: 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI-AEAGKTVVTTIHQP 355
SGGER+RV + ++ + +L LDEP + LD ++ ++ D+ AE TV+ HQP
Sbjct: 130 SGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQP 189
Query: 356 SSRLFHKFDKLILLGKGSLLYFG 378
+++ L G + G
Sbjct: 190 EDAK-RLAQRVVFLDNGRIAAQG 211
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 92.4 bits (230), Expect = 8e-22
Identities = 58/210 (27%), Positives = 95/210 (45%), Gaps = 51/210 (24%)
Query: 168 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP---YS 224
+E+ +L ++ + GE +AL+G SGSGK+TLL LL+G L G IT + P
Sbjct: 13 QEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQ--GEITLDGVPVSDLE 70
Query: 225 KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQ 284
K+L S I + Q P+L + LR N LG
Sbjct: 71 KALSSLISVLNQR----PYL-------FDTTLR------------------NNLG----- 96
Query: 285 DTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA 344
R SGGER+R+ + ++ + ++ LDEPT GLD T +++ ++ ++ +
Sbjct: 97 ---------RRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLK- 146
Query: 345 GKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374
KT++ H + DK++ L G +
Sbjct: 147 DKTLIWITHHLTG--IEHMDKILFLENGKI 174
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 93.7 bits (234), Expect = 8e-22
Identities = 64/229 (27%), Positives = 110/229 (48%), Gaps = 38/229 (16%)
Query: 166 SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLN-LLSGRLMEPTVGGSITYNDHPYS 224
+L I+ S+ PGE + ++G +GSGK++LL L RL+E + GSI + S
Sbjct: 13 RPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALF--RLVELS-SGSILIDGVDIS 69
Query: 225 K----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL 280
K L+S+I + QD VLF T++ L P + ++ + +GL
Sbjct: 70 KIGLHDLRSRISIIPQDPVLFSG-TIRSNLD-------PFG---EYSDEELWQALERVGL 118
Query: 281 -ERCQ------DTMI--GGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTA 331
E + DT++ GG +S G+R+ +C+ ++ +L LDE T+ +D T
Sbjct: 119 KEFVESLPGGLDTVVEEGGEN---LSVGQRQLLCLARALLRKSKILVLDEATASVDPETD 175
Query: 332 LRIVQMLQDIAEAGKTVVTTIHQPSSRL--FHKFDKLILLGKGSLLYFG 378
I + +++ A TV+T H RL D++++L KG ++ F
Sbjct: 176 ALIQKTIRE-AFKDCTVLTIAH----RLDTIIDSDRILVLDKGRVVEFD 219
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 93.9 bits (234), Expect = 1e-21
Identities = 60/223 (26%), Positives = 113/223 (50%), Gaps = 21/223 (9%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLL---NLLSGRLMEPTVGGSITYNDHP-YS 224
EK+ L I + +V AL+GPSG GK+TLL N ++ + + G + ++ Y
Sbjct: 13 EKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYD 72
Query: 225 K-----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG 279
K L+ ++G V Q FP +++ + + Y RL K++ ++ + + +
Sbjct: 73 KKIDVVELRRRVGMVFQKPNPFP-MSIYDNIAYG--PRLHGIKDKKELDEIVEESLKKAA 129
Query: 280 L-ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQML 338
L + +D + + G+SGG+++R+CI + + P +L LDEPTS LD +I +++
Sbjct: 130 LWDEVKDRLHDSAL--GLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELI 187
Query: 339 QDIAEAGKTVVTTIH--QPSSRLFHKFDKLILLGKGSLLYFGK 379
Q++ + T+V H Q ++R+ D+ G L+ +G
Sbjct: 188 QELKKK-YTIVIVTHNMQQAARI---SDRTAFFYDGELVEYGP 226
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 97.6 bits (244), Expect = 1e-21
Identities = 53/183 (28%), Positives = 94/183 (51%), Gaps = 13/183 (7%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS-----KSL 227
L+G++ +V PGEV AL+G +G+GK+TL+ +LSG + P G I + P + +L
Sbjct: 24 LDGVSLTVRPGEVHALLGENGAGKSTLMKILSG-VYPPD-SGEILIDGKPVAFSSPRDAL 81
Query: 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQK-EKRAIDVINELGLERCQDT 286
+ I V Q+ L P+L+V E + L ++ +RA +++ LGL+ DT
Sbjct: 82 AAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDT 141
Query: 287 MIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGK 346
+ V +S +R+ V I + + +L LDEPT+ L R+ +++ + G
Sbjct: 142 L-----VGDLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGV 196
Query: 347 TVV 349
++
Sbjct: 197 AII 199
|
Length = 500 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 97.8 bits (244), Expect = 1e-21
Identities = 64/190 (33%), Positives = 100/190 (52%), Gaps = 15/190 (7%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SL 227
+L+G++ + PGE +A++GPSGSGK+TLL L+G L + G +T + P S +
Sbjct: 350 VLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLL--DPLQGEVTLDGVPVSSLDQDEV 407
Query: 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINEL--GLERCQD 285
+ ++ QD LF TV+E L A L + D + L GL D
Sbjct: 408 RRRVSVCAQDAHLF-DTTVRENLRLARPDATDEELWAALERVGLADWLRALPDGL----D 462
Query: 286 TMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAG 345
T++G R +SGGER+R+ + ++ + +L LDEPT LD+ TA +++ L A +G
Sbjct: 463 TVLGEGGAR-LSGGERQRLALARALLADAPILLLDEPTEHLDAETADELLEDLLA-ALSG 520
Query: 346 KTVVTTIHQP 355
+TVV H
Sbjct: 521 RTVVLITHHL 530
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 94.9 bits (236), Expect = 2e-21
Identities = 67/233 (28%), Positives = 111/233 (47%), Gaps = 28/233 (12%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP---YSK 225
+K +++G++ V GE L+GP+G+GKTT L +L G L P GSI+ P ++
Sbjct: 19 DKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLG-LTHPD-AGSISLCGEPVPSRAR 76
Query: 226 SLKSKIGFVTQDDVLFPHLTVKETLT----YAALLRLPNTLTKQQKEKRAIDVINELGLE 281
+ ++G V Q D L P TV+E L Y L + ++ LE
Sbjct: 77 HARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGL-------SAAAARALVPPLLEFAKLE 129
Query: 282 RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI 341
D V +SGG ++R+ + ++ +P +L LDEPT+GLD + + L+ +
Sbjct: 130 NKADAK-----VGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSL 184
Query: 342 AEAGKTVVTTIH--QPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIGC 392
GKT++ T H + + RL +L ++ +G + G + S IGC
Sbjct: 185 LARGKTILLTTHFMEEAERLCD---RLCVIEEGRKIAEGAPHALIE--SEIGC 232
|
Length = 306 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 93.2 bits (232), Expect = 2e-21
Identities = 73/220 (33%), Positives = 109/220 (49%), Gaps = 24/220 (10%)
Query: 168 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPT-----VGGSITYNDHP 222
E + L GI+ ++ GE++ +GP+G+GKTT L +LSG L++PT V G + +
Sbjct: 32 REVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSG-LLQPTSGEVRVAGLVPWKR-- 88
Query: 223 YSKSLKSKIGFVT-QDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE 281
K +IG V Q L+ L V ++ LL L + +KR ++ L LE
Sbjct: 89 -RKKFLRRIGVVFGQKTQLWWDLPVIDSF---YLLAAIYDLPPARFKKRLDELSELLDLE 144
Query: 282 RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI 341
DT VR +S G+R R I ++ P +LFLDEPT GLD I L++
Sbjct: 145 ELLDTP-----VRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEY 199
Query: 342 -AEAGKTVVTTIH--QPSSRLFHKFDKLILLGKGSLLYFG 378
E G TV+ T H + L +++++ KG LLY G
Sbjct: 200 NRERGTTVLLTSHYMKDIEAL---ARRVLVIDKGRLLYDG 236
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 96.7 bits (241), Expect = 3e-21
Identities = 59/184 (32%), Positives = 94/184 (51%), Gaps = 25/184 (13%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTT----LLNLLSGRLMEPTVGGSITYNDHPYS 224
++ I+ ++ PGE L L+G SGSGK+T LL L++ + G I ++ P
Sbjct: 298 HNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLINSQ-------GEIWFDGQPLH 350
Query: 225 K-------SLKSKIGFVTQD--DVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVI 275
++ +I V QD L P L V + + + P TL+ Q+E++ I V+
Sbjct: 351 NLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQP-TLSAAQREQQVIAVM 409
Query: 276 NELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIV 335
E+GL+ F SGG+R+R+ I +I+ PSL+ LDEPTS LD T +I+
Sbjct: 410 EEVGLDPETRHRYPAEF----SGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQIL 465
Query: 336 QMLQ 339
+L+
Sbjct: 466 ALLK 469
|
Length = 529 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 92.9 bits (232), Expect = 3e-21
Identities = 63/237 (26%), Positives = 112/237 (47%), Gaps = 44/237 (18%)
Query: 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS----K 225
+ +L+ ++ ++ PGEV+A++GP+G+GK+TLL LSG L G + N P +
Sbjct: 15 RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGEL--SPDSGEVRLNGRPLADWSPA 72
Query: 226 SLKSKIGFVTQDDVL-FPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQ 284
L + + Q L FP TV+E + A+ R P+ L++ + + + ++ L
Sbjct: 73 ELARRRAVLPQHSSLSFP-FTVEEVV---AMGRAPHGLSRAEDDALVAAALAQVDL---- 124
Query: 285 DTMIGGSFVRGVSGGERKRV----------CIGNEIIINPSLLFLDEPTSGLDSTTALRI 334
+ G +SGGE++RV P L LDEPTS LD +
Sbjct: 125 -AHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGP----PRWLLLDEPTSALDLAHQHHV 179
Query: 335 VQMLQDIA-EAGKTVVTTIH------QPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384
+++ + +A E G V+ +H + + D+++LL +G L+ G +E +
Sbjct: 180 LRLARQLAHERGLAVIVVLHDLNLAARYA-------DRIVLLHQGRLVADGTPAEVL 229
|
Length = 258 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 91.4 bits (228), Expect = 4e-21
Identities = 60/212 (28%), Positives = 87/212 (41%), Gaps = 58/212 (27%)
Query: 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME 209
L+ D+ V K+IL G+ ++ GEV ALMGP+GSGK+TL + G +
Sbjct: 1 LEIKDLHVSV--------GGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGH-PK 51
Query: 210 PTV-GGSITYNDH------PYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTL 262
V G I + P ++ I Q P + + L Y
Sbjct: 52 YEVTEGEILFKGEDITDLPPEERARLG-IFLAFQYPPEIPGVKNADFLRY---------- 100
Query: 263 TKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEP 322
+NE G SGGE+KR I +++ P L LDEP
Sbjct: 101 ------------VNE-----------------GFSGGEKKRNEILQLLLLEPDLAILDEP 131
Query: 323 TSGLDSTTALRIV-QMLQDIAEAGKTVVTTIH 353
SGLD ALR+V +++ + E GK+V+ H
Sbjct: 132 DSGLD-IDALRLVAEVINKLREEGKSVLIITH 162
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 91.4 bits (227), Expect = 7e-21
Identities = 65/193 (33%), Positives = 94/193 (48%), Gaps = 19/193 (9%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLL-------SGRLMEPTVGGSITYNDHPYS 224
IL G+ V GE +AL+G SGSGK+TLL +L SG + VG + D
Sbjct: 25 ILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVS--LVGQPLHQMDEEAR 82
Query: 225 KSLKSK-IGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC 283
L++K +GFV Q +L P L E + ALLR + +Q A ++ +LGL +
Sbjct: 83 AKLRAKHVGFVFQSFMLIPTLNALENVELPALLRGES---SRQSRNGAKALLEQLGLGKR 139
Query: 284 QDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI-A 342
D + +SGGE++RV + P +LF DEPT LD T +I +L +
Sbjct: 140 LDHLPA-----QLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNR 194
Query: 343 EAGKTVVTTIHQP 355
E G T++ H
Sbjct: 195 EHGTTLILVTHDL 207
|
Length = 228 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 95.8 bits (239), Expect = 7e-21
Identities = 71/224 (31%), Positives = 109/224 (48%), Gaps = 16/224 (7%)
Query: 168 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225
++K IL GI+ ++ GE L ++GPSGSGK+TL LL G P GS+ + +
Sbjct: 347 QKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIW--PPTSGSVRLDGADLRQWD 404
Query: 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC 283
L IG++ QD LF T+ E + P + + + ++I L L +
Sbjct: 405 REQLGRHIGYLPQDVELFDG-TIAENIARFGEEADPEKVIEAARLAGVHELI--LRLPQG 461
Query: 284 QDTMIG--GSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI 341
DT IG G+ +SGG+R+R+ + + +P L+ LDEP S LDS + +
Sbjct: 462 YDTRIGEGGA---TLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAA 518
Query: 342 AEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385
G TVV H+PS DK+++L G + FG E +A
Sbjct: 519 KARGGTVVVIAHRPS--ALASVDKILVLQDGRIAAFGPREEVLA 560
|
Length = 580 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 94.4 bits (235), Expect = 8e-21
Identities = 61/194 (31%), Positives = 96/194 (49%), Gaps = 27/194 (13%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDH---PYSKS--- 226
+N + V GE+ +MG SGSGK+TL+ LL+ RL+EPT G I + S +
Sbjct: 44 VNDASLDVEEGEIFVIMGLSGSGKSTLVRLLN-RLIEPT-RGEILVDGKDIAKLSAAELR 101
Query: 227 --LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQ 284
+ KI V Q L PH TV E + + ++ + K ++E+RA++ + +GLE
Sbjct: 102 ELRRKKISMVFQSFALLPHRTVLENVAFGLEVQ---GVPKAEREERALEALELVGLEGYA 158
Query: 285 DTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI--- 341
D + +SGG ++RV + + +P +L +DE S LD I +QD
Sbjct: 159 D-----KYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPL----IRTEMQDELLE 209
Query: 342 --AEAGKTVVTTIH 353
A+ KT+V H
Sbjct: 210 LQAKLKKTIVFITH 223
|
Length = 386 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 91.1 bits (226), Expect = 8e-21
Identities = 59/208 (28%), Positives = 100/208 (48%), Gaps = 18/208 (8%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS----KSL 227
ILN I+ SV GE +A+ GPSG GK+TLL +++ L+ PT G++ + S ++
Sbjct: 18 ILNNISLSVRAGEFIAITGPSGCGKSTLLKIVAS-LISPTS-GTLLFEGEDVSTLKPEAY 75
Query: 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTM 287
+ ++ + Q LF TV++ L + +R ++ A+D++ L
Sbjct: 76 RQQVSYCAQTPALFGD-TVEDNLIFPWQIR-----NRRPDRAAALDLLARFAL----PDS 125
Query: 288 IGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQD-IAEAGK 346
I + +SGGE++R+ + + P +L LDE TS LD + I +M+ + E
Sbjct: 126 ILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVREQNV 185
Query: 347 TVVTTIHQPSSRLFHKFDKLILLGKGSL 374
V+ H + H DK+I L G
Sbjct: 186 AVLWITHDKDQAIRH-ADKVITLQPGHA 212
|
Length = 223 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 91.7 bits (228), Expect = 8e-21
Identities = 56/199 (28%), Positives = 107/199 (53%), Gaps = 22/199 (11%)
Query: 171 DILNGITGSVNPGEVLALMGPSGSGKTTLL---NLL----SGRL--------MEPTVGGS 215
++L G++ N G+V++++G SGSGK+T L N L +G + ++ G
Sbjct: 20 EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQ 79
Query: 216 ITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVI 275
+ D + L++++G V Q L+ H+TV E + A + L ++K + +RA +
Sbjct: 80 LKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVL--GVSKAEAIERAEKYL 137
Query: 276 NELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIV 335
++G+ D ++ +SGG+++RV I + + P ++ DEPTS LD ++
Sbjct: 138 AKVGIAEKAD-----AYPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVL 192
Query: 336 QMLQDIAEAGKTVVTTIHQ 354
+++QD+AE G+T+V H+
Sbjct: 193 KVMQDLAEEGRTMVVVTHE 211
|
Length = 256 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 91.6 bits (228), Expect = 9e-21
Identities = 61/224 (27%), Positives = 116/224 (51%), Gaps = 19/224 (8%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---- 224
K ILN ++ S+ G++ AL+GP+G GK+TLL + RL+ P G++ D P S
Sbjct: 14 TKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFA-RLLTPQ-SGTVFLGDKPISMLSS 71
Query: 225 KSLKSKIGFVTQDDVLFPHLTVKETLTY--AALLRLPNTLTKQQKEKRAIDVINELGLER 282
+ L ++ + Q + +TV+E + Y + L L L+ ++ ++ +E+
Sbjct: 72 RQLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLS--AEDNARVNQ----AMEQ 125
Query: 283 CQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA 342
+ + + +SGG+R+R + + + ++ LDEPT+ LD + ++++++++
Sbjct: 126 TRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELN 185
Query: 343 EAGKTVVTTIH--QPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384
GKTVVT +H +SR D L++L G ++ G E M
Sbjct: 186 TQGKTVVTVLHDLNQASRY---CDHLVVLANGHVMAQGTPEEVM 226
|
Length = 255 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 91.4 bits (228), Expect = 1e-20
Identities = 52/194 (26%), Positives = 92/194 (47%), Gaps = 34/194 (17%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLL---NLLSGRLMEPTVGGSITYNDHP-YS 224
+K L I + +V AL+GPSG GK+TLL N ++ + V G + + Y
Sbjct: 19 DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYD 78
Query: 225 KS-----LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG 279
L+ ++G V Q FP +++ + + Y LRL + + +D I E
Sbjct: 79 PKVDVVELRRRVGMVFQKPNPFP-MSIYDNVAYG--LRL------HGIKDKELDEIVESS 129
Query: 280 L----------ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDST 329
L +R + G+SGG+++R+CI + + P +L +DEPTS LD
Sbjct: 130 LKKAALWDEVKDRLHKS------ALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPI 183
Query: 330 TALRIVQMLQDIAE 343
+ L+I +++ ++ +
Sbjct: 184 STLKIEELITELKK 197
|
Length = 253 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 90.2 bits (224), Expect = 1e-20
Identities = 69/214 (32%), Positives = 103/214 (48%), Gaps = 17/214 (7%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYN---DHPYSKSLKS 229
L G+ ++ GE ++L+G SG GK+TLLNL+SG L +PT GG I P +
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISG-LAQPTSGGVILEGKQITEPGPDRM-- 57
Query: 230 KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIG 289
V Q+ L P LTV+E + A+ R+ L+K ++ + I +GL D G
Sbjct: 58 ---VVFQNYSLLPWLTVRENI-ALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPG 113
Query: 290 GSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA-EAGKTV 348
+SGG ++RV I + I P +L LDEP LD+ T + + L I E TV
Sbjct: 114 -----QLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTV 168
Query: 349 VTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382
+ H L D++++L G G+ E
Sbjct: 169 LMVTHDVDEALLLS-DRVVMLTNGPAANIGQILE 201
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 93.1 bits (231), Expect = 2e-20
Identities = 60/215 (27%), Positives = 95/215 (44%), Gaps = 21/215 (9%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDH------PYSK 225
+L+ ++ + GE+LAL+G SG GKTTLL ++G + + G I D P+ +
Sbjct: 20 VLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKR 79
Query: 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQD 285
L + Q+ LFPHL V++ + + + K K A V + L L D
Sbjct: 80 GL----ALLFQNYALFPHLKVEDNVAFGLRAQ------KMPKADIAERVADALKLVGLGD 129
Query: 286 TMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-- 343
+SGG ++R+ I I I P +L LDEP S LD+ + + + + E
Sbjct: 130 A--AAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEEL 187
Query: 344 AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378
T++ H L DK ++ G L G
Sbjct: 188 PELTILCVTHDQDDALTLA-DKAGIMKDGRLAAHG 221
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 90.4 bits (225), Expect = 2e-20
Identities = 56/168 (33%), Positives = 91/168 (54%), Gaps = 18/168 (10%)
Query: 179 SVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYN--DHPYSKSLKSKIGFVTQ 236
+V GE +A++GPSG+GK+TLLNL++G L GS+T N DH + + + + Q
Sbjct: 21 TVERGERVAILGPSGAGKSTLLNLIAGFL--TPASGSLTLNGQDHTTTPPSRRPVSMLFQ 78
Query: 237 DDVLFPHLTVKETLTYAALLRLPN-TLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRG 295
++ LF HLTV + + L P L Q+EK + ++G+E + G
Sbjct: 79 ENNLFSHLTVAQNI---GLGLNPGLKLNAAQREKLH-AIARQMGIEDLLARLPG-----Q 129
Query: 296 VSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALR--IVQMLQDI 341
+SGG+R+RV + ++ +L LDEP S LD ALR ++ ++ +
Sbjct: 130 LSGGQRQRVALARCLVREQPILLLDEPFSALDP--ALRQEMLTLVSQV 175
|
Length = 232 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 90.3 bits (225), Expect = 2e-20
Identities = 58/190 (30%), Positives = 96/190 (50%), Gaps = 18/190 (9%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK------- 225
L ++ SV GE+ ++G SG+GK+TL+ ++G L PT GS+ + +
Sbjct: 21 LKDVSLSVPKGEIFGIIGRSGAGKSTLIRCING-LERPT-SGSVLVDGTDLTLLSGKELR 78
Query: 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQD 285
+ +IG + Q L TV E + L + K + E+R ++++ +GLE D
Sbjct: 79 KARRRIGMIFQHFNLLSSRTVFENVALP--LEIAGV-PKAEIEERVLELLELVGLEDKAD 135
Query: 286 TMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI-AEA 344
++ +SGG+++RV I + NP +L DE TS LD T I+ +L+DI E
Sbjct: 136 -----AYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINREL 190
Query: 345 GKTVVTTIHQ 354
G T+V H+
Sbjct: 191 GLTIVLITHE 200
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 90.1 bits (224), Expect = 2e-20
Identities = 64/219 (29%), Positives = 107/219 (48%), Gaps = 22/219 (10%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SLKSK 230
L+ ++ + GE++AL+GPSGSGKTTLL L++G +E G+I + + +
Sbjct: 18 LDDVSLDIPSGELVALLGPSGSGKTTLLRLIAG--LERPDSGTILFGGEDATDVPVQERN 75
Query: 231 IGFVTQDDVLFPHLTVKETLTYAALLR----LPNTLTKQQKEKRAIDVINELGLERCQDT 286
+GFV Q LF H+TV + + + ++ P + K ++EL L+ Q
Sbjct: 76 VGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAK-------VHEL-LKLVQLD 127
Query: 287 MIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTT--ALR-IVQMLQDIAE 343
+ + +SGG+R+RV + + + P +L LDEP LD+ LR ++ L D E
Sbjct: 128 WLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHD--E 185
Query: 344 AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382
T V H L D+++++ KG + G E
Sbjct: 186 LHVTTVFVTHDQEEAL-EVADRVVVMNKGRIEQVGTPDE 223
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 90.0 bits (224), Expect = 4e-20
Identities = 45/172 (26%), Positives = 80/172 (46%), Gaps = 42/172 (24%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKI 231
++G++ S+ GE L L+G SG GK+TL L+ L EPT G I + +K
Sbjct: 28 AVDGVSFSIKEGETLGLVGESGCGKSTLGRLIL-GLEEPT-SGEILFEGKDITK------ 79
Query: 232 GFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGS 291
L+K+++ +R ++++ ++GL
Sbjct: 80 ------------------------------LSKEERRERVLELLEKVGL----PEEFLYR 105
Query: 292 FVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE 343
+ +SGG+R+R+ I + +NP L+ DEP S LD + +I+ +L+D+ E
Sbjct: 106 YPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQE 157
|
Length = 268 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 89.7 bits (223), Expect = 4e-20
Identities = 63/226 (27%), Positives = 117/226 (51%), Gaps = 24/226 (10%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPY----S 224
K +L+ ++ + G + +++GP+G+GK+TLL+++S RL++ G IT + S
Sbjct: 13 TKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMS-RLLKKD-SGEITIDGLELTSTPS 70
Query: 225 KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAI--DVINELGLER 282
K L K+ + Q++ + LTV++ + + R P + + KE R I + I L LE
Sbjct: 71 KELAKKLSILKQENHINSRLTVRDLVGFG---RFPYSQGRLTKEDRRIINEAIEYLHLED 127
Query: 283 CQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA 342
D ++ +SGG+R+R I + + + LDEP + LD +++I+++L+ +A
Sbjct: 128 LSD-----RYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLA 182
Query: 343 -EAGKTVVTTIH---QPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384
E GKT+V +H S D ++ L G ++ G E +
Sbjct: 183 DELGKTIVVVLHDINFASCYS----DHIVALKNGKVVKQGSPDEII 224
|
Length = 252 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 93.5 bits (233), Expect = 4e-20
Identities = 55/179 (30%), Positives = 97/179 (54%), Gaps = 19/179 (10%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTL-LNLLSGRLMEPTVGGSITYNDHPYS------- 224
++GI+ ++ G+ L L+G SGSGK+TL L LL RL+ G I ++
Sbjct: 303 VDGISLTLRRGQTLGLVGESGSGKSTLGLALL--RLIPSQ--GEIRFDGQDIDGLSRKEM 358
Query: 225 KSLKSKIGFVTQD--DVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER 282
+ L+ ++ V QD L P +TV + + + P L+ ++++R I+ + E+GL+
Sbjct: 359 RPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEP-KLSAAERDQRVIEALEEVGLD- 416
Query: 283 CQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI 341
T + SGG+R+R+ I +I+ P L+ LDEPTS LD + +++ +L+D+
Sbjct: 417 -PATR--NRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDL 472
|
Length = 534 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 91.5 bits (228), Expect = 5e-20
Identities = 52/170 (30%), Positives = 87/170 (51%), Gaps = 13/170 (7%)
Query: 161 LKGMTSS-EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYN 219
L+G++ S + K++++ + ++N GE L L+GPSG GKTT+L L++G P G I +
Sbjct: 17 LRGISKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAG-FETPD-SGRIMLD 74
Query: 220 DHPYSK--SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINE 277
+ + + V Q LFPH+TV E + + LR+ T + R ++ +
Sbjct: 75 GQDITHVPAENRHVNTVFQSYALFPHMTVFENVAFG--LRMQKT-PAAEITPRVMEALRM 131
Query: 278 LGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLD 327
+ LE +SGG+++RV I ++ P +L LDE S LD
Sbjct: 132 VQLEE-----FAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALD 176
|
Length = 375 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 92.9 bits (231), Expect = 8e-20
Identities = 62/204 (30%), Positives = 106/204 (51%), Gaps = 17/204 (8%)
Query: 160 ILKGMTSSEEK-DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPT-----VG 213
I + S EE+ ++L GI+ + GE++A++G SGSGK+TL+N+L G L +PT V
Sbjct: 10 IRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNIL-GCLDKPTSGTYRVA 68
Query: 214 GS--ITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRA 271
G T + ++ + GF+ Q L HLT + + A+ L ++Q+ RA
Sbjct: 69 GQDVATLDADALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYA---GLERKQRLLRA 125
Query: 272 IDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTA 331
+++ LGLE + +SGG+++RV I ++ ++ DEPT LDS +
Sbjct: 126 QELLQRLGLEDRVEYQPS-----QLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSG 180
Query: 332 LRIVQMLQDIAEAGKTVVTTIHQP 355
++ +L + + G TV+ H P
Sbjct: 181 EEVMAILHQLRDRGHTVIIVTHDP 204
|
Length = 648 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 92.0 bits (229), Expect = 9e-20
Identities = 77/230 (33%), Positives = 119/230 (51%), Gaps = 31/230 (13%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDH----PYS 224
+ ILNGI+ ++ G+ +A++G SG+GK+T+L LL R + GSIT +
Sbjct: 275 RRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLF-RFYDVN-SGSITIDGQDIRDVTQ 332
Query: 225 KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRA-----IDVINEL- 278
+SL+ IG V QD VLF + T+ + Y T ++ A D I L
Sbjct: 333 QSLRRAIGIVPQDTVLF-NDTIAYNIKYGR-----PDATAEEVGAAAEAAQIHDFIQSLP 386
Query: 279 -GLERCQDTMIGGSFVRG--VSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIV 335
G DT +G RG +SGGE++RV I I+ NP +L LDE TS LD+ T I
Sbjct: 387 EGY----DTGVG---ERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQ 439
Query: 336 QMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385
L++++ AG+T + H+ S+ + D++I+L G ++ G E +A
Sbjct: 440 AALREVS-AGRTTLVIAHRLSTII--DADEIIVLDNGRIVERGTHEELLA 486
|
Length = 497 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 87.5 bits (217), Expect = 1e-19
Identities = 58/186 (31%), Positives = 102/186 (54%), Gaps = 16/186 (8%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228
++ +N I+ +V V L+GP+G+GK+TLL +++G ++ PT G I ++ HP+++
Sbjct: 12 KQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITG-ILRPT-SGEIIFDGHPWTRKDL 69
Query: 229 SKIGFVTQDDVLFPHLTVKETL-TYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTM 287
KIG + + L+ +LT +E L + LL LP + R +V+N + L T
Sbjct: 70 HKIGSLIESPPLYENLTARENLKVHTTLLGLP--------DSRIDEVLNIVDL-----TN 116
Query: 288 IGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKT 347
G + S G ++R+ I ++ +P LL LDEPT+GLD + ++++ E G T
Sbjct: 117 TGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGIT 176
Query: 348 VVTTIH 353
V+ + H
Sbjct: 177 VILSSH 182
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 89.9 bits (224), Expect = 1e-19
Identities = 64/224 (28%), Positives = 99/224 (44%), Gaps = 38/224 (16%)
Query: 174 NGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL------ 227
GIT A+ G SG+GKT+L+N +SG L P G I N +
Sbjct: 24 QGIT---------AIFGRSGAGKTSLINAISG-LTRPQKG-RIVLNGRVLFDAEKGICLP 72
Query: 228 --KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQD 285
K +IG+V QD LFPH V+ L Y + K + ++ LG+E D
Sbjct: 73 PEKRRIGYVFQDARLFPHYKVRGNLRYG--------MAKSMVAQFD-KIVALLGIEPLLD 123
Query: 286 TMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAG 345
+ +SGGE++RV IG ++ P LL +DEP + LD ++ L+ +A
Sbjct: 124 -----RYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREI 178
Query: 346 KTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK-----ASEAM 384
+ + + D++++L +G + FG AS AM
Sbjct: 179 NIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWASSAM 222
|
Length = 352 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 87.7 bits (218), Expect = 2e-19
Identities = 72/240 (30%), Positives = 108/240 (45%), Gaps = 42/240 (17%)
Query: 166 SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDH---- 221
S E+K+IL G+ +V GE+ A+MGP+GSGK+TL ++G G+I +
Sbjct: 9 SVEDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLE 68
Query: 222 --PYSKSLKSK-IGFVTQDDVLFPHLTVKETLTYAA----------LLRLPNTLTKQQKE 268
P ++ + F Q P ++ E L A L L + L K K
Sbjct: 69 LEPDERARAGLFLAF--QYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFL-KLLKA 125
Query: 269 KRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEI----IINPSLLFLDEPTS 324
K A+ ++E L R S G SGGE+KR NEI ++ P L LDE S
Sbjct: 126 KLALLGMDEEFLNR--------SVNEGFSGGEKKR----NEILQMALLEPKLAILDEIDS 173
Query: 325 GLDSTTALRIV-QMLQDIAEAGKTVVTTIHQPSSRLFH--KFDKLILLGKGSLLYFGKAS 381
GLD AL+IV + + + E ++ + H RL + K D + +L G ++ G
Sbjct: 174 GLD-IDALKIVAEGINRLREPDRSFLIITHYQ--RLLNYIKPDYVHVLLDGRIVKSGDVE 230
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 91.9 bits (229), Expect = 2e-19
Identities = 70/242 (28%), Positives = 108/242 (44%), Gaps = 57/242 (23%)
Query: 124 DDI---PEDIEAGTRERPKFQTEPT--LPIYLKFTDVTYKVILKGMTSSEEKDILNGITG 178
DD+ P D E P +EP+ L Y++ ++T+ S E ++ +
Sbjct: 447 DDVLRNPVDPLLEEEEAPAAGSEPSPRLSGYVELRNITFGY------SPLEPPLIENFSL 500
Query: 179 SVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP---YSKS-LKSKIGFV 234
++ PG+ +AL+G SGSGK+T+ L++G L +P G I ++ P + L + + V
Sbjct: 501 TLQPGQRVALVGGSGSGKSTIAKLVAG-LYQPW-SGEILFDGIPREEIPREVLANSVAMV 558
Query: 235 TQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-CQDTMI----- 288
QD LF TV++ LT L + I + L R C+D I
Sbjct: 559 DQDIFLFEG-TVRDNLT------LWD------------PTIPDADLVRACKDAAIHDVIT 599
Query: 289 ------------GGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQ 336
GG +SGG+R+R+ I ++ NPS+L LDE TS LD T I
Sbjct: 600 SRPGGYDAELAEGG---ANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDD 656
Query: 337 ML 338
L
Sbjct: 657 NL 658
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 86.8 bits (216), Expect = 2e-19
Identities = 63/219 (28%), Positives = 103/219 (47%), Gaps = 23/219 (10%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS----- 226
IL G++ V GEV ++G +G GKTTLL L G L P GSI + +K
Sbjct: 15 ILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLL--PVKSGSIRLDGEDITKLPPHER 72
Query: 227 LKSKIGFVTQDDVLFPHLTVKETL-TYAALLRLPNTLTKQQKEKRAIDVINEL--GLERC 283
++ I +V Q +FP LTV+E L T A L ++ ++ D I EL L+
Sbjct: 73 ARAGIAYVPQGREIFPRLTVEENLLTGLAALP--------RRSRKIPDEIYELFPVLKEM 124
Query: 284 QDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE 343
GG +SGG+++++ I ++ P LL LDEPT G+ + I ++++ +
Sbjct: 125 LGRR-GGD----LSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRA 179
Query: 344 AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382
G + + Q D+ ++ +G ++ G E
Sbjct: 180 EGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDE 218
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 90.1 bits (224), Expect = 5e-19
Identities = 69/223 (30%), Positives = 116/223 (52%), Gaps = 25/223 (11%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS----KSLK 228
L+G+ +V PGE +AL+GPSG+GK+TL LL R +P G I + L+
Sbjct: 356 LDGLNLTVRPGETVALVGPSGAGKSTLFQLLL-RFYDPQ-SGRILLDGVDLRQLDPAELR 413
Query: 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQ----QKEKRAIDVINELGLERCQ 284
+++ V QD VLF +V E + Y P+ ++ + A + I L
Sbjct: 414 ARMALVPQDPVLFAA-SVMENIRYGR----PDATDEEVEAAARAAHAHEFI--SALPEGY 466
Query: 285 DTMIGGSFVRGV--SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA 342
DT +G RGV SGG+R+R+ I I+ + +L LDE TS LD+ + ++VQ +
Sbjct: 467 DTYLGE---RGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESE-QLVQQALETL 522
Query: 343 EAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385
G+T + H+ ++ L K D+++++ +G ++ G +E +A
Sbjct: 523 MKGRTTLIIAHRLATVL--KADRIVVMDQGRIVAQGTHAELIA 563
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 87.6 bits (217), Expect = 7e-19
Identities = 71/241 (29%), Positives = 118/241 (48%), Gaps = 25/241 (10%)
Query: 161 LKGMTSS-EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYN 219
L G++ S +K ++NG++ +V GE L+GP+G+GK+T+ ++ G M G IT
Sbjct: 44 LAGVSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILG--MTSPDAGKITVL 101
Query: 220 DHPY---SKSLKSKIGFVTQDDVLFPHLTVKETL-TYAALLRLPNTLTKQQKEKRAIDVI 275
P ++ +++IG V Q D L TV+E L + + ++ + I +
Sbjct: 102 GVPVPARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFGM-----STREIEAVIPSL 156
Query: 276 NELG-LERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRI 334
E LE D V +SGG ++R+ + +I +P LL LDEPT+GLD I
Sbjct: 157 LEFARLESKADAR-----VSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLI 211
Query: 335 VQMLQDIAEAGKTVVTTIH--QPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIGC 392
+ L+ + GKT++ T H + + RL D+L +L G + G+ + IGC
Sbjct: 212 WERLRSLLARGKTILLTTHFMEEAERL---CDRLCVLEAGRKIAEGRPHALID--EHIGC 266
Query: 393 S 393
Sbjct: 267 Q 267
|
Length = 340 |
| >gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 84.0 bits (209), Expect = 9e-19
Identities = 44/188 (23%), Positives = 81/188 (43%), Gaps = 50/188 (26%)
Query: 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPY-----S 224
K + ++ V GE++ + G G+G+T L L G + P G IT + P
Sbjct: 13 KGAVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFG--LRPPASGEITLDGKPVTRRSPR 70
Query: 225 KSLKSKIGFVTQD---DVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE 281
++++ I +V +D + L L+V E + ++LL
Sbjct: 71 DAIRAGIAYVPEDRKREGLVLDLSVAENIALSSLL------------------------- 105
Query: 282 RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI 341
SGG +++V + + +P +L LDEPT G+D I ++++++
Sbjct: 106 ---------------SGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIREL 150
Query: 342 AEAGKTVV 349
A+AGK V+
Sbjct: 151 ADAGKAVL 158
|
This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 88.7 bits (221), Expect = 1e-18
Identities = 46/181 (25%), Positives = 88/181 (48%), Gaps = 16/181 (8%)
Query: 179 SVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPY-----SKSLKSKIGF 233
+V GE+L + G G+G+T L L G P G I + P ++K+ I +
Sbjct: 281 TVRAGEILGIAGLVGAGRTELARALFG--ARPASSGEILLDGKPVRIRSPRDAIKAGIAY 338
Query: 234 VTQD---DVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAI--DVINELGLERCQDTMI 288
V +D + L +++ E +T A+L R ++++RA+ I L + +
Sbjct: 339 VPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRI-KTPSP-- 395
Query: 289 GGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTV 348
+ +SGG +++V + + +P +L LDEPT G+D I ++++++A GK +
Sbjct: 396 -EQPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAI 454
Query: 349 V 349
+
Sbjct: 455 L 455
|
Length = 500 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 87.4 bits (217), Expect = 1e-18
Identities = 56/184 (30%), Positives = 87/184 (47%), Gaps = 16/184 (8%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SLKS 229
L I+ SV GE + L+GPSG GKTTLL +++G L T G+I ++ K
Sbjct: 19 ALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAG-LERQT-AGTIYQGGRDITRLPPQKR 76
Query: 230 KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDV-INELGLERCQDTMI 288
G V Q LFP+LTV + + Y L + + + + EL L+
Sbjct: 77 DYGIVFQSYALFPNLTVADNIAYG--------LKNRGMGRAEVAERVAEL-LDLVGLPGS 127
Query: 289 GGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTV 348
+ +SGG+++RV + + +P LL LDEP S LD+ + ++ + +
Sbjct: 128 ERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQR--RLG 185
Query: 349 VTTI 352
VTTI
Sbjct: 186 VTTI 189
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 87.1 bits (216), Expect = 1e-18
Identities = 54/160 (33%), Positives = 90/160 (56%), Gaps = 10/160 (6%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SLKS 229
+LN I+ + G+++AL+GPSGSGKTTLL +++G +E G I ++ S+ +
Sbjct: 17 VLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAG--LEHQTSGHIRFHGTDVSRLHARDR 74
Query: 230 KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDV-INELGLERCQDTMI 288
K+GFV Q LF H+TV + + + L LP +++ AI + +L LE Q +
Sbjct: 75 KVGFVFQHYALFRHMTVFDNIAF-GLTVLPR---RERPNAAAIKAKVTQL-LEMVQLAHL 129
Query: 289 GGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDS 328
+ +SGG+++RV + + + P +L LDEP LD+
Sbjct: 130 ADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDA 169
|
Length = 353 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 82.3 bits (204), Expect = 2e-18
Identities = 33/82 (40%), Positives = 54/82 (65%), Gaps = 1/82 (1%)
Query: 291 SFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVT 350
+V +SGG+R+RV + +++NP LL LDEPTSGLD + R++++L+++AE G+TV+
Sbjct: 76 GYVPQLSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVII 135
Query: 351 TIHQPSSRLFHKFDKLILLGKG 372
H P D++I+L G
Sbjct: 136 VTHDPEL-AELAADRVIVLKDG 156
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 83.4 bits (207), Expect = 2e-18
Identities = 50/189 (26%), Positives = 86/189 (45%), Gaps = 17/189 (8%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS-L 227
+ + +G++ ++ GE L L GP+GSGKTTLL L++G L P G+I + +
Sbjct: 14 GRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLL--PPAAGTIKLDGGDIDDPDV 71
Query: 228 KSKIGFVTQDDVLFPHLTVKETLTY-AALLRLPNTLTKQQKEKRAIDVINELGLERCQDT 286
++ + + P LTV E L + AA L +E + +GL
Sbjct: 72 AEACHYLGHRNAMKPALTVAENLEFWAAFLG--------GEELDIAAALEAVGLAPLAHL 123
Query: 287 MIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGK 346
G +S G+++RV + ++ N + LDEPT+ LD+ ++++ G
Sbjct: 124 PFG-----YLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGG 178
Query: 347 TVVTTIHQP 355
V+ H P
Sbjct: 179 IVIAATHIP 187
|
Length = 207 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 85.9 bits (213), Expect = 4e-18
Identities = 65/198 (32%), Positives = 103/198 (52%), Gaps = 30/198 (15%)
Query: 153 TDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTV 212
VT + + K + + I I ++ GE + +GPSG GK+TLL +++G L + T
Sbjct: 2 ASVTLRNVTK---AYGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAG-LEDITS 57
Query: 213 G----GSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKE 268
G G ND P ++ +G V Q L+PHL+V E +++ L+L K++
Sbjct: 58 GDLFIGEKRMNDVPPAER---GVGMVFQSYALYPHLSVAENMSFG--LKLAGA-KKEEIN 111
Query: 269 KRAIDV--INELG--LERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTS 324
+R V + +L L+R + +SGG+R+RV IG ++ PS+ LDEP S
Sbjct: 112 QRVNQVAEVLQLAHLLDRKP---------KALSGGQRQRVAIGRTLVAEPSVFLLDEPLS 162
Query: 325 GLDSTTALRIVQMLQDIA 342
LD+ ALR VQM +I+
Sbjct: 163 NLDA--ALR-VQMRIEIS 177
|
Length = 369 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 85.2 bits (211), Expect = 5e-18
Identities = 60/201 (29%), Positives = 93/201 (46%), Gaps = 20/201 (9%)
Query: 188 LMGPSGSGKTTLLNLLSGRLMEPTVG-----GSITYNDHPYSKSLKSKIGFVTQDDVLFP 242
L+GPSG GKTTLL LL+G +P G G N P+ + I V Q LFP
Sbjct: 1 LLGPSGCGKTTLLRLLAG-FEQPDSGSIMLDGEDVTNVPPHLRH----INMVFQSYALFP 55
Query: 243 HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302
H+TV+E + + +R K + + V+ L L + ++ +SGG+++
Sbjct: 56 HMTVEENVAFGLKMR------KVPRAEIKPRVLEALRLVQLEE--FADRKPHQLSGGQQQ 107
Query: 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFH 361
RV + ++ P +L LDEP S LD ++ L+ I E G T V H +
Sbjct: 108 RVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAMTM 167
Query: 362 KFDKLILLGKGSLLYFGKASE 382
D++ ++ KG + G E
Sbjct: 168 S-DRIAIMRKGKIAQIGTPEE 187
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 84.2 bits (208), Expect = 7e-18
Identities = 67/230 (29%), Positives = 111/230 (48%), Gaps = 22/230 (9%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPY---SK 225
+K ++N ++ ++ GE L+GP+G+GK+T+ +L G M G IT P ++
Sbjct: 16 DKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLG--MISPDRGKITVLGEPVPSRAR 73
Query: 226 SLKSKIGFVTQDDVLFPHLTVKETL-TYAALLRLPNTLTKQQKEKRAIDVINELGLERCQ 284
+ IG V Q D L P TV+E L + + + ++ E ++ LE
Sbjct: 74 LARVAIGVVPQFDNLDPEFTVRENLLVFGRYFGM----STREIEAVIPSLLEFARLESKA 129
Query: 285 DTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA 344
D V +SGG ++R+ + +I +P LL LDEPT+GLD I + L+ +
Sbjct: 130 DVR-----VALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLAR 184
Query: 345 GKTVVTTIH--QPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIGC 392
GKT++ T H + + RL D+L +L G + G+ + IGC
Sbjct: 185 GKTILLTTHFMEEAERL---CDRLCVLESGRKIAEGRPHALID--EQIGC 229
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 86.2 bits (214), Expect = 9e-18
Identities = 61/239 (25%), Positives = 104/239 (43%), Gaps = 43/239 (17%)
Query: 128 EDIEAGTRERPKFQTEPTLPIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLA 187
ED R+ P + ++F DV++ + ++ PG+ +A
Sbjct: 313 EDAVPDVRDPPGAIDLGRVKGAVEFDDVSFSYDNSRQG-------VEDVSFEAKPGQTVA 365
Query: 188 LMGPSGSGKTTLLNLLSGRLMEPTVG---------GSITYNDHPYSKSLKSKIGFVTQDD 238
++GP+G+GK+TL+NLL R+ +P G ++T SL+ I V QD
Sbjct: 366 IVGPTGAGKSTLINLLQ-RVFDPQSGRILIDGTDIRTVTR------ASLRRNIAVVFQDA 418
Query: 239 VLF-----PHLTV-KETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSF 292
LF ++ V + T + + +A D I DT++G
Sbjct: 419 GLFNRSIEDNIRVGRPDATDEEMRA-------AAERAQAHDFI--ERKPDGYDTVVGE-- 467
Query: 293 VRG--VSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVV 349
RG +SGGER+R+ I ++ +P +L LDE TS LD T ++ L ++ + T +
Sbjct: 468 -RGRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFI 525
|
Length = 588 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 82.6 bits (204), Expect = 1e-17
Identities = 69/235 (29%), Positives = 112/235 (47%), Gaps = 39/235 (16%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLL---NLLSGRLMEPTVGGSITYNDHPYSK 225
EK L IT S+ V AL+GPSG GK+TLL N ++ + + G I YN
Sbjct: 18 EKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMD 77
Query: 226 S------LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG 279
S L+ KIG V Q FP ++ E + Y + +K K+ +D I E
Sbjct: 78 SGADVVALRRKIGMVFQRPNPFPK-SIYENVAYGPRIH-------GEKNKKTLDTIVEKS 129
Query: 280 L----------ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDST 329
L +R D+ + +SGG+++R+CI + +NP ++ +DEP S LD
Sbjct: 130 LKGAALWDEVKDRLHDSALS------LSGGQQQRLCIARTLAVNPEVILMDEPCSALDPI 183
Query: 330 TALRIVQMLQDIAEAGKTVVTTIH--QPSSRLFHKFDKLILLGKGSLLYFGKASE 382
+I +++D+ + TV+ H Q ++R+ + + LGK L+ F K ++
Sbjct: 184 ATAKIEDLIEDLKKE-YTVIIVTHNMQQAARV-SDYTGFMYLGK--LIEFDKTTQ 234
|
Length = 253 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 82.3 bits (203), Expect = 1e-17
Identities = 69/251 (27%), Positives = 119/251 (47%), Gaps = 44/251 (17%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLL---NLLSGRLMEPTVGGSITYNDHP-YS 224
+ + L GI N E+ AL+GPSG GK+T L N ++ + T+ G+++ Y+
Sbjct: 17 KFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYA 76
Query: 225 KS-----LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG 279
+ L+ ++G V Q FP ++ E + Y LRL K+K +D E
Sbjct: 77 PNEDVVQLRKQVGMVFQQPNPFP-FSIYENVIYG--LRL-----AGVKDKAVLDEAVETS 128
Query: 280 L------ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALR 333
L + +D + + +SGG+++RVCI + + P ++ LDEPTS LD ++ +
Sbjct: 129 LKQAAIWDEVKDHLHESAL--SLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQ 186
Query: 334 IVQMLQDIAEAGKTVVTT--IHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIG 391
I ML ++ + ++ T +HQ +SR+ DK G+L+ F
Sbjct: 187 IENMLLELRDQYTIILVTHSMHQ-ASRI---SDKTAFFLTGNLIEFAD------------ 230
Query: 392 CSPQIAMNPAE 402
+ Q+ +NP E
Sbjct: 231 -TKQMFLNPKE 240
|
Length = 252 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 82.2 bits (203), Expect = 2e-17
Identities = 65/223 (29%), Positives = 117/223 (52%), Gaps = 23/223 (10%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP--YSK----S 226
L GI ++ GEV A++G +G+GK+TL L+G +++P G I ++ P YS+
Sbjct: 22 LKGININIKKGEVTAILGGNGAGKSTLFQNLNG-ILKP-SSGRILFDGKPIDYSRKGLMK 79
Query: 227 LKSKIGFVTQ--DDVLFPHLTVKETLTYAAL-LRLPNTLTKQQKEKRAIDVINELGLERC 283
L+ +G V Q D+ LF +V + +++ A+ L+LP + + KR + + G+E
Sbjct: 80 LRESVGMVFQDPDNQLFS-ASVYQDVSFGAVNLKLP----EDEVRKRVDNALKRTGIEHL 134
Query: 284 QDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA- 342
+D +S G++KRV I +++ P +L LDEPT+GLD I+++L ++
Sbjct: 135 KDKP-----THCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQK 189
Query: 343 EAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385
E G T++ H + D + ++ +G ++ G E A
Sbjct: 190 ELGLTIIIATHDIDIVPLY-CDNVFVMKEGRVILQGNPKEVFA 231
|
Length = 283 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 84.5 bits (210), Expect = 2e-17
Identities = 55/186 (29%), Positives = 90/186 (48%), Gaps = 20/186 (10%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS-----KSL 227
+ ++ SV GE+ AL+G +G+GK+TL+ +L G L +P G I + ++
Sbjct: 20 NDDVSLSVKKGEIHALLGENGAGKSTLMKILFG-LYQPD-SGEIRVDGKEVRIKSPRDAI 77
Query: 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTM 287
+ IG V Q +L P LTV E + + ++Q R ++ GL D
Sbjct: 78 RLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPD-- 135
Query: 288 IGGSFVRGVSGGERKRVCIGNEII----INPSLLFLDEPTSGLDSTTALRIVQMLQDIAE 343
+ V +S GE++RV EI+ LL LDEPT+ L A + ++L+ +A
Sbjct: 136 ---AKVADLSVGEQQRV----EILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAA 188
Query: 344 AGKTVV 349
GKT++
Sbjct: 189 EGKTII 194
|
Length = 501 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 81.1 bits (201), Expect = 3e-17
Identities = 55/238 (23%), Positives = 97/238 (40%), Gaps = 37/238 (15%)
Query: 161 LKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYND 220
KG E L I+ + GE + ++G +G+GK+TLL L++G + +PT G +
Sbjct: 31 AKGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAG-IYKPT-SGKVKVT- 87
Query: 221 HPYSKSLKSKIGFVTQDDVLF-PHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVIN--E 277
+ I F P LT +E + L+ LT+++ +++ ++I E
Sbjct: 88 ----GKVAPLIEL----GAGFDPELTGRENIYLRGLI---LGLTRKEIDEKVDEIIEFAE 136
Query: 278 LGLERCQDTMIGGSF----VRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALR 333
L G F V+ S G R+ + P +L LDE + D+ +
Sbjct: 137 L-----------GDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEK 185
Query: 334 IVQMLQDIAEAGKTVVTTIHQPS--SRLFHKFDKLILLGKGSLLYFGKASEAMAYFSS 389
++ L ++ E KT+V H + D+ I L G + G E + +
Sbjct: 186 CLERLNELVEKNKTIVLVSHDLGAIKQY---CDRAIWLEHGQIRMEGSPEEVIPAYEE 240
|
Length = 249 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 81.4 bits (201), Expect = 3e-17
Identities = 62/218 (28%), Positives = 112/218 (51%), Gaps = 13/218 (5%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITY---NDHPYSKSLK 228
I++G+ + PG + L+GP+GSGK+TLL LL+G G++ + H S+ +
Sbjct: 16 IVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAG--ALRPDAGTVDLAGVDLHGLSRRAR 73
Query: 229 S-KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTM 287
+ ++ V QD LTV++ + AL R+P+ + + + + L R + +
Sbjct: 74 ARRVALVEQDSDTAVPLTVRDVV---ALGRIPH-RSLWAGDSPHDAAVVDRALARTELSH 129
Query: 288 IGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKT 347
+ + +SGGER+RV + + P LL LDEPT+ LD L + +++++A G T
Sbjct: 130 LADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVT 189
Query: 348 VVTTIHQPSSRLFHKF-DKLILLGKGSLLYFGKASEAM 384
VV +H + L + D +++L G ++ G E +
Sbjct: 190 VVAALHDLN--LAASYCDHVVVLDGGRVVAAGPPREVL 225
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 81.3 bits (201), Expect = 4e-17
Identities = 67/246 (27%), Positives = 121/246 (49%), Gaps = 21/246 (8%)
Query: 167 SEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS-- 224
+ + +LN ++ S+ GE +AL+G SG GK+TL LL G L P+ G++++ P +
Sbjct: 22 HQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVG-LESPS-QGNVSWRGEPLAKL 79
Query: 225 -----KSLKSKIGFVTQDDV--LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINE 277
K+ + I V QD + + P TV+E + LR +L K ++ RA +++
Sbjct: 80 NRAQRKAFRRDIQMVFQDSISAVNPRKTVREII--REPLRHLLSLDKAERLARASEMLRA 137
Query: 278 LGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQM 337
+ L D + +SGG+ +RVC+ + + P LL LDE S LD ++++
Sbjct: 138 VDL----DDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRL 193
Query: 338 LQDIAEAGKTVVTTI-HQPSSRLFHKF-DKLILLGKGSLLYFGKASEAMAYFSSIGCSPQ 395
L+ + + T I H RL +F +++++ G ++ + + + S G Q
Sbjct: 194 LKKLQQQFGTACLFITH--DLRLVERFCQRVMVMDNGQIVETQPVGDKLTFSSPAGRVLQ 251
Query: 396 IAMNPA 401
A+ PA
Sbjct: 252 NAVLPA 257
|
Length = 268 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 81.2 bits (200), Expect = 4e-17
Identities = 63/223 (28%), Positives = 112/223 (50%), Gaps = 24/223 (10%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLM-EPTVGGSITYNDHPYSKS----- 226
L+ + +++ GE++AL+GPSGSGK+TLL LSG + + + G I +
Sbjct: 20 LHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLAR 79
Query: 227 ----LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLP------NTLTKQQKEKRAIDVIN 276
++ G++ Q L L+V E + AL P + T++QK+ RA+ +
Sbjct: 80 DIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQ-RALQALT 138
Query: 277 ELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQ 336
+G+ V +SGG+++RV I ++ ++ DEP + LD +A ++
Sbjct: 139 RVGMVH-----FAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMD 193
Query: 337 MLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378
L+DI + G TVV T+HQ L + ++++ L +G + Y G
Sbjct: 194 TLRDINQNDGITVVVTLHQVDYALRY-CERIVALRQGHVFYDG 235
|
Length = 262 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 83.9 bits (208), Expect = 5e-17
Identities = 58/204 (28%), Positives = 101/204 (49%), Gaps = 20/204 (9%)
Query: 165 TSSEEKDILNGITGSVNPGEVLALMGPSGSGKT----TLLNLLSGRLMEPTVGGSITYND 220
+ + GI+ + GE LAL+G SGSGK+ ++L LL GSI ++
Sbjct: 18 QEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAA-HPSGSILFDG 76
Query: 221 HPYSKSLKS--------KIGFVTQDDV--LFPHLTVKETLTYAALLRLPNTLTKQQKEKR 270
+ + KIG + Q+ + L P T+ + L A +LRL L++ R
Sbjct: 77 EDLLAASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQL--AEVLRLHRGLSRAAARAR 134
Query: 271 AIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTT 330
A++++ +G+ + + ++ +SGG+R+RV I + P LL DEPT+ LD T
Sbjct: 135 ALELLELVGIPEPEKRL--DAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTV 192
Query: 331 ALRIVQMLQDI-AEAGKTVVTTIH 353
+I+ +L+++ AE G ++ H
Sbjct: 193 QAQILDLLKELQAELGMAILFITH 216
|
Length = 534 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 83.9 bits (208), Expect = 5e-17
Identities = 60/203 (29%), Positives = 98/203 (48%), Gaps = 20/203 (9%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKI 231
+L+ + V PGE L + G SG+GKT+LL L+G + P G I+ S +
Sbjct: 408 LLSELNFEVRPGERLLITGESGAGKTSLLRALAG--LWPWGSGRISMPAD-------SAL 458
Query: 232 GFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIG-G 290
F+ Q P T++E L Y PN + + V++++GL + +
Sbjct: 459 LFLPQR-PYLPQGTLREALCY------PNAAPDFS-DAELVAVLHKVGLGDLAERLDEED 510
Query: 291 SFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVT 350
+ R +SGGE++R+ ++ P +FLDE TS LD T R+ Q+L++ TV++
Sbjct: 511 RWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEELP-DATVIS 569
Query: 351 TIHQPSSRLFHKFDKLILLGKGS 373
H+P+ FH +L LL
Sbjct: 570 VGHRPTLWNFHS-RQLELLDDAG 591
|
Length = 604 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 80.7 bits (199), Expect = 5e-17
Identities = 60/230 (26%), Positives = 107/230 (46%), Gaps = 29/230 (12%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLL---NLLSGRLMEPTVGGSI------TYN 219
EK + +T + ++ A++GPSG GKTTLL N ++ + V G I Y+
Sbjct: 15 EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYD 74
Query: 220 DHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG 279
+ K+G V Q FP +++ + + + R+ K K +D I E
Sbjct: 75 PQLDVTEYRKKVGMVFQKPTPFP-MSIYDNVAFG--PRIHGV-----KSKHKLDRIVEES 126
Query: 280 LERC-------QDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTAL 332
L++ + G+ +SGG+++R+CI + + P ++ LDEPTS LD
Sbjct: 127 LKKAALWDEVKSELNKPGT---RLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQ 183
Query: 333 RIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382
RI ++L++++E T+V H + D + + +G L+ +G E
Sbjct: 184 RIEKLLEELSEN-YTIVIVTHNIGQAI-RIADYIAFMYRGELIEYGPTRE 231
|
Length = 250 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 80.7 bits (199), Expect = 5e-17
Identities = 57/199 (28%), Positives = 100/199 (50%), Gaps = 18/199 (9%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRL-MEPTV--GGSITYNDHPYSKS--- 226
L I S+ EV A++GPSG GK+T + L+ + M P V G + YN K
Sbjct: 28 LKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVD 87
Query: 227 ---LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL-ER 282
L+ IG V Q FP ++ + + Y R+ T K++ ++ + ++ L +
Sbjct: 88 LVELRKNIGMVFQKGNPFPQ-SIFDNVAYGP--RIHGTKNKKKLQEIVEKSLKDVALWDE 144
Query: 283 CQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA 342
+D + + +SGG+++R+CI + NP +L +DEPTS LD + +I +++ +
Sbjct: 145 VKDRLHTQAL--SLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLK 202
Query: 343 EAGKTVVTTIH--QPSSRL 359
E T+V H Q ++R+
Sbjct: 203 EK-YTIVIVTHNMQQAARV 220
|
Length = 259 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 82.6 bits (204), Expect = 7e-17
Identities = 59/218 (27%), Positives = 106/218 (48%), Gaps = 13/218 (5%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPY----SKSL 227
+L+G+ SV G ++ L+GP+G+GKTTLL ++G + PT G ++ +++
Sbjct: 18 VLDGVDLSVREGSLVGLVGPNGAGKTTLLRAING-TLTPTAG-TVLVAGDDVEALSARAA 75
Query: 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTM 287
++ V QD L V++ + R P+ ++ E +ER
Sbjct: 76 SRRVASVPQDTSLSFEFDVRQVVEMG---RTPH-RSRFDTWTETDRAAVERAMERTGVAQ 131
Query: 288 IGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKT 347
V +SGGER+RV + + +L LDEPT+ LD +R +++++ + + GKT
Sbjct: 132 FADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKT 191
Query: 348 VVTTIHQPSSRLFHKF-DKLILLGKGSLLYFGKASEAM 384
V IH L ++ D+L+LL G + G ++ +
Sbjct: 192 AVAAIHDLD--LAARYCDELVLLADGRVRAAGPPADVL 227
|
Length = 402 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 79.6 bits (196), Expect = 1e-16
Identities = 61/230 (26%), Positives = 114/230 (49%), Gaps = 29/230 (12%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLL---NLLSGRLMEPTVGGSITYN-DHPYS 224
EK LN I + ++ AL+GPSG GK+T L N ++ + + G + + + Y
Sbjct: 16 EKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYD 75
Query: 225 K-----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG 279
K L+ ++G V Q FP +++ + + Y R+ K+K+ +D I E
Sbjct: 76 KDVDVVELRKRVGMVFQKPNPFP-MSIYDNVAYGP--RIHGI-----KDKKELDKIVEWA 127
Query: 280 LERC------QDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALR 333
L++ +D + + +SGG+++R+CI I + P ++ +DEPTS LD + L+
Sbjct: 128 LKKAALWDEVKDDLKKSAL--KLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLK 185
Query: 334 IVQMLQDIAEAGKTVVTTIH-QPSSRLFHKFDKLILLGKGSLLYFGKASE 382
I ++ ++ + V+ T + Q +SR+ + L+G L+ F K +
Sbjct: 186 IEDLMVELKKEYTIVIVTHNMQQASRV-SDYTAFFLMGD--LIEFNKTEK 232
|
Length = 251 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 78.7 bits (194), Expect = 1e-16
Identities = 59/199 (29%), Positives = 95/199 (47%), Gaps = 22/199 (11%)
Query: 179 SVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDD 238
S + GE+L L+GP+G+GKTTLL + G + P G++ K IG+V Q
Sbjct: 2 SADKGELLGLLGPNGAGKTTLLRAILG--LIPPAKGTVKVAGASPGKG-WRHIGYVPQRH 58
Query: 239 VL---FP----HLTVKETLTYAALLRLPNTLTKQQKEKRAI-DVINELGLERCQDTMIGG 290
FP H + + LR P + A+ D + +GL D +G
Sbjct: 59 EFAWDFPISVAHTVMSGRTGHIGWLRRP-----CVADFAAVRDALRRVGLTELADRPVG- 112
Query: 291 SFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVT 350
+SGG+R+RV + + PS+L LDEP +GLD T + ++ ++A AG ++
Sbjct: 113 ----ELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILM 168
Query: 351 TIHQPSSRLFHKFDKLILL 369
T H + + D+++LL
Sbjct: 169 TTHDLAQAM-ATCDRVVLL 186
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 78.2 bits (193), Expect = 1e-16
Identities = 52/192 (27%), Positives = 88/192 (45%), Gaps = 21/192 (10%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225
E+ + G++ ++N GE L + GP+G GKTTLL +L+G L+ P G + +N ++
Sbjct: 12 ERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAG-LLRPD-SGEVRWNGTALAEQRD 69
Query: 226 SLKSKIGFVTQDDVLFPHLTVKETLT-YAALLRLPNTLTKQQKEKRAI-DVINELGLERC 283
I ++ L P L+ E L +AA+ +R I D + +GL
Sbjct: 70 EPHRNILYLGHLPGLKPELSALENLHFWAAIH---------GGAQRTIEDALAAVGLTGF 120
Query: 284 QDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE 343
+D +S G+++R+ + + L LDEPT+ LD + +L+
Sbjct: 121 EDLP-----AAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLA 175
Query: 344 AGKTVVTTIHQP 355
G V+ T HQ
Sbjct: 176 RGGIVLLTTHQD 187
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 78.8 bits (195), Expect = 2e-16
Identities = 63/220 (28%), Positives = 106/220 (48%), Gaps = 24/220 (10%)
Query: 176 ITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP---YSKSLKSKI- 231
++ V GE+L L+GP+G+GK+TLL ++G L GSI + P +S + ++
Sbjct: 15 LSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPGS---GSIQFAGQPLEAWSAAELARHR 71
Query: 232 GFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGS 291
+++Q + V + LT L P+ + +V LGL D + G
Sbjct: 72 AYLSQQQTPPFAMPVFQYLT----LHQPDKTRTEAVASALNEVAEALGL---DDKL--GR 122
Query: 292 FVRGVSGGERKRVCIGNEII-----INPS--LLFLDEPTSGLDSTTALRIVQMLQDIAEA 344
V +SGGE +RV + ++ INP+ LL LDEP + LD + ++L ++ +
Sbjct: 123 SVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQ 182
Query: 345 GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384
G VV + H + D++ LL +G LL G+ E +
Sbjct: 183 GIAVVMSSHD-LNHTLRHADRVWLLKQGKLLASGRRDEVL 221
|
Length = 248 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 82.7 bits (205), Expect = 2e-16
Identities = 54/174 (31%), Positives = 85/174 (48%), Gaps = 33/174 (18%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SL 227
IL+ ++ + PGE +A++GPSGSGK+TLL LL G E GS+ Y+ + ++
Sbjct: 468 ILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLG--FETPESGSVFYDGQDLAGLDVQAV 525
Query: 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQD-- 285
+ ++G V Q+ L ++ E + A L L A + GL +D
Sbjct: 526 RRQLGVVLQNGRLMSG-SIFENIAGGAPLTL----------DEAWEAARMAGLA--EDIR 572
Query: 286 -------TMI--GGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTT 330
T+I GG +SGG+R+R+ I ++ P +L DE TS LD+ T
Sbjct: 573 AMPMGMHTVISEGGG---TLSGGQRQRLLIARALVRKPRILLFDEATSALDNRT 623
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 81.9 bits (203), Expect = 2e-16
Identities = 51/185 (27%), Positives = 82/185 (44%), Gaps = 42/185 (22%)
Query: 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKS 229
+ +L ++ ++NPGE + L+G +G+GK+TLL +L+G L EP G +T
Sbjct: 16 RPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGEL-EPD-SGEVTR-PKGL------ 66
Query: 230 KIGFVTQDDVLFPHLTVKETLT------YAALLRLP--------------NTLTKQQKEK 269
++G+++Q+ L P TV + + L L L +E
Sbjct: 67 RVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEEL 126
Query: 270 -------RAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEP 322
RA + + LG + S SGG R+RV + ++ P LL LDEP
Sbjct: 127 DGWTLEARAEEALLGLGFPDEDRPV--SSL----SGGWRRRVALARALLEEPDLLLLDEP 180
Query: 323 TSGLD 327
T+ LD
Sbjct: 181 TNHLD 185
|
Length = 530 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 78.8 bits (194), Expect = 2e-16
Identities = 52/184 (28%), Positives = 87/184 (47%), Gaps = 22/184 (11%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP-TVGGSITYN-----DHPYSKS 226
L+ ++ +N GE++ L+G +G+GKTTLL L G +P G I ++ D +K
Sbjct: 21 LHEVSLHINQGEIVTLIGANGAGKTTLLGTLCG---DPRATSGRIVFDGKDITDWQTAKI 77
Query: 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQ-- 284
++ + V + +F +TV+E L Q++ K ++ L R Q
Sbjct: 78 MREAVAIVPEGRRVFSRMTVEENLAMGGFF--AERDQFQERIKWVYELFPRLHERRIQRA 135
Query: 285 DTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA 344
TM SGGE++ + IG ++ P LL LDEP+ GL +I ++ + E
Sbjct: 136 GTM---------SGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQ 186
Query: 345 GKTV 348
G T+
Sbjct: 187 GMTI 190
|
Length = 237 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 79.3 bits (196), Expect = 2e-16
Identities = 59/201 (29%), Positives = 92/201 (45%), Gaps = 25/201 (12%)
Query: 168 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227
EK LNG++ + G+ + ++G +G+GK+TLLN ++G L PT G I + +K
Sbjct: 17 LEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLK-PT-SGQILIDGVDVTKKS 74
Query: 228 KSK----IGFVTQD--DVLFPHLTVKETLTYAAL--------LRLPNTLTKQQKEKRAID 273
+K + V QD P LT++E L A L +E+ A
Sbjct: 75 VAKRANLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLA-- 132
Query: 274 VINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALR 333
LGLE IG +SGG+R+ + + + P +L LDE T+ LD TA
Sbjct: 133 -RLGLGLENRLSDRIG-----LLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEF 186
Query: 334 IVQMLQDIAEAGK-TVVTTIH 353
++++ I E K T + H
Sbjct: 187 VMELTAKIVEEHKLTTLMVTH 207
|
Length = 263 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 82.0 bits (203), Expect = 2e-16
Identities = 76/274 (27%), Positives = 140/274 (51%), Gaps = 34/274 (12%)
Query: 121 FSDDDIPEDIEAGTRERPKFQTEPTLPIYLKFTDVTYKVILKGMTSSEEKDILNGITGSV 180
F+ D+ ++ + G R + + + ++F +VT+ K E L I +
Sbjct: 319 FAILDLEQEKDEGKRVIERAKGD------IEFRNVTFTYPGK------EVPALRNINFKI 366
Query: 181 NPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDH---PYS-KSLKSKIGFVTQ 236
G+ +AL+G SGSGK+T+ NLL+ R + G I + H Y+ SL++++ V+Q
Sbjct: 367 PAGKTVALVGRSGSGKSTIANLLT-RFYDID-EGEILLDGHDLRDYTLASLRNQVALVSQ 424
Query: 237 DDVLFPHLTVKETLTYAALLRLPNTLTKQQKEK-----RAIDVINELGLERCQDTMIGGS 291
+ LF + T+ + YA +++Q E+ A+D IN ++ DT+IG +
Sbjct: 425 NVHLF-NDTIANNIAYAR----TEQYSREQIEEAARMAYAMDFIN--KMDNGLDTVIGEN 477
Query: 292 FVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTT 351
V +SGG+R+R+ I ++ + +L LDE TS LD T + R +Q D + +T +
Sbjct: 478 GVL-LSGGQRQRIAIARALLRDSPILILDEATSALD-TESERAIQAALDELQKNRTSLVI 535
Query: 352 IHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385
H+ S+ K D+++++ G ++ G +E +A
Sbjct: 536 AHRLST--IEKADEILVVEDGEIVERGTHAELLA 567
|
Length = 582 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 78.9 bits (195), Expect = 2e-16
Identities = 65/239 (27%), Positives = 121/239 (50%), Gaps = 26/239 (10%)
Query: 151 KFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP 210
K +V++ + E + L ++ +N GE +A++G +GSGK+T+ +L+G L++P
Sbjct: 9 KVENVSFSY------PNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTG-LLKP 61
Query: 211 TVGG----SITYNDHPYSKSLKSKIGFVTQD-DVLFPHLTVKETLTYAALLRLPNTLTKQ 265
G IT + + ++ KIG + Q+ D F TV++ + + L N
Sbjct: 62 QSGEIKIDGITISKENLKE-IRKKIGIIFQNPDNQFIGATVEDDIAFG----LENKKVPP 116
Query: 266 QKEKRAI-DVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTS 324
+K K I D+ ++G+E D + +SGG+++RV I + + +NP ++ DE TS
Sbjct: 117 KKMKDIIDDLAKKVGMEDYLDKE-----PQNLSGGQKQRVAIASVLALNPEIIIFDESTS 171
Query: 325 GLDSTTALRIVQMLQDIAEAG-KTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382
LD I +++ D+ + KT+++ H + DK+I+ +G L+ GK E
Sbjct: 172 MLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAI--LADKVIVFSEGKLIAQGKPKE 228
|
Length = 271 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 78.7 bits (194), Expect = 2e-16
Identities = 54/219 (24%), Positives = 106/219 (48%), Gaps = 19/219 (8%)
Query: 167 SEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS-- 224
+ +L ++ S+ GE + L+G SG GK+TL LL G L +P G++++
Sbjct: 21 KQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLG-LEKPA-QGTVSFRGQDLYQL 78
Query: 225 -----KSLKSKIGFVTQD--DVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINE 277
++ + + V QD + P +TV++ + LR +L + +++ R ++++
Sbjct: 79 DRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQII--GEPLRHLTSLDESEQKARIAELLDM 136
Query: 278 LGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQM 337
+GL + R +SGG+ +R+ I + + P L+ LDE S LD I+++
Sbjct: 137 VGL----RSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILEL 192
Query: 338 LQDIAEAGKTVVTTIHQPSSRLFHKF-DKLILLGKGSLL 375
L+ + +A T I RL F ++ ++ KG ++
Sbjct: 193 LRKLQQAFGTAYLFITH-DLRLVQSFCQRVAVMDKGQIV 230
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 77.8 bits (192), Expect = 3e-16
Identities = 55/198 (27%), Positives = 96/198 (48%), Gaps = 19/198 (9%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLL-------SGRLMEPTVGGSI---TYNDH 221
+L ++ +VN GE +AL GPSG+GK+TLL L SGR++ G + +
Sbjct: 23 VLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPR 82
Query: 222 PYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL- 280
+ + IG+V+Q + P ++ E + L R + ++ RA +++ L +
Sbjct: 83 EVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLER---GVPREAARARARELLARLNIP 139
Query: 281 ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQD 340
ER + +F SGGE++RV I I + +L LDEPT+ LD+ +V+++ +
Sbjct: 140 ERLWH-LPPATF----SGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAE 194
Query: 341 IAEAGKTVVTTIHQPSSR 358
G ++ H R
Sbjct: 195 AKARGAALIGIFHDEEVR 212
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 81.7 bits (202), Expect = 3e-16
Identities = 67/234 (28%), Positives = 113/234 (48%), Gaps = 37/234 (15%)
Query: 168 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225
+ ++L+ + + PGE + ++GPSGSGK+TL LL RL P G + + +
Sbjct: 468 DSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQ-RLYTPQHG-QVLVDGVDLAIAD 525
Query: 226 --SLKSKIGFVTQDDVLF------------PHLTVKETLTYAALLRLPNTLTKQQKEKRA 271
L+ ++G V Q++VLF P E + +AA L A
Sbjct: 526 PAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPF-EHVIHAAKL------------AGA 572
Query: 272 IDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTA 331
D I L + +T +G +SGG+R+R+ I ++ NP +L DE TS LD +
Sbjct: 573 HDFI--SELPQGYNTEVGEKGA-NLSGGQRQRIAIARALVGNPRILIFDEATSALDYESE 629
Query: 332 LRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385
I++ +++I G+TV+ H+ S+ D++I+L KG + G+ E +A
Sbjct: 630 ALIMRNMREIC-RGRTVIIIAHRLST--VRACDRIIVLEKGQIAESGRHEELLA 680
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 78.7 bits (194), Expect = 3e-16
Identities = 59/199 (29%), Positives = 104/199 (52%), Gaps = 27/199 (13%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME--PTV--GGSITYN----- 219
E L I ++ EV A++GPSG GK+T + L+ R++E P+V G I Y
Sbjct: 36 EDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLN-RMVELVPSVKTTGKILYRDQNIF 94
Query: 220 DHPYSKS-LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINEL 278
D YS L++ +G V Q FP ++ + +TY P K+K+ +D I E
Sbjct: 95 DKSYSVEELRTNVGMVFQKPNPFPK-SIYDNVTYG-----PKI--HGIKDKKTLDEIVEK 146
Query: 279 GL------ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTAL 332
L + +D + ++ G+SGG+++R+CI + I P ++ +DEPTS LD + L
Sbjct: 147 SLRGAAIWDELKDRLHDNAY--GLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTL 204
Query: 333 RIVQMLQDIAEAGKTVVTT 351
++ +++Q++ + ++ T
Sbjct: 205 KVEELVQELKKDYSIIIVT 223
|
Length = 271 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 78.1 bits (192), Expect = 4e-16
Identities = 54/201 (26%), Positives = 98/201 (48%), Gaps = 18/201 (8%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSIT----------Y 218
+K + + V G V AL+GPSG GKTT L ++ R+ + T G +T Y
Sbjct: 16 DKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAIN-RMHDLTPGARVTGRILLDGQDIY 74
Query: 219 NDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINEL 278
+++ ++G V Q FP ++V + + A L+L + + A +
Sbjct: 75 GPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVV--AGLKLAGIRDRDHLMEVAERSLRGA 132
Query: 279 GL-ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQM 337
L + +D + + G+SGG+++R+CI + + P +L +DEPTS LD + RI +
Sbjct: 133 ALWDEVKDRL--KTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDL 190
Query: 338 LQDIAEAGKTVVTT--IHQPS 356
+ D+ + ++ T +HQ +
Sbjct: 191 MTDLKKVTTIIIVTHNMHQAA 211
|
Length = 252 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 77.8 bits (192), Expect = 4e-16
Identities = 63/227 (27%), Positives = 109/227 (48%), Gaps = 31/227 (13%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLS--GRLMEP-TVGGSITY-NDHPYSK--- 225
L I + +V AL+GPSG GK+T L L+ L+ + G + Y
Sbjct: 19 LKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDID 78
Query: 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL--- 280
L+ ++G V Q FP +++ + + Y P T K+K+ +D I E L
Sbjct: 79 VNQLRKRVGMVFQQPNPFP-MSIYDNVAYG-----PRT--HGIKDKKKLDEIVEKSLKGA 130
Query: 281 ---ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQM 337
+ +D + + G+SGG+++R+CI + + P +L +DEPTS LD + L+I ++
Sbjct: 131 ALWDEVKDRLKKSAL--GLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEEL 188
Query: 338 LQDIAEAGKTVVTTIH--QPSSRLFHKFDKLILLGKGSLLYFGKASE 382
+Q++ + T+V H Q +SR+ DK G ++ FG +
Sbjct: 189 IQEL-KKDYTIVIVTHNMQQASRI---SDKTAFFLNGEIVEFGDTVD 231
|
Length = 250 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 77.8 bits (191), Expect = 5e-16
Identities = 62/225 (27%), Positives = 113/225 (50%), Gaps = 17/225 (7%)
Query: 168 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-----PTVGGSITYNDHP 222
+K IL IT + + +MGPSGSGK+TLL +L+ RL+E V G + Y
Sbjct: 21 NDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLN-RLIEIYDSKIKVDGKVLYFGKD 79
Query: 223 YSK----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINEL 278
+ L+ ++G V Q FPHL++ + + Y L+ K++ +K + + ++
Sbjct: 80 IFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYP--LKSHGIKEKREIKKIVEECLRKV 137
Query: 279 GL-ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQM 337
GL + D + S +SGG+++R+ I + + P +L +DEPTS +D + I ++
Sbjct: 138 GLWKEVYDRL--NSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKL 195
Query: 338 LQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382
+ ++ +V H P ++ D + L G L+ +G ++E
Sbjct: 196 ITELKNE-IAIVIVSHNP-QQVARVADYVAFLYNGELVEWGSSNE 238
|
Length = 257 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 79.7 bits (196), Expect = 6e-16
Identities = 58/213 (27%), Positives = 101/213 (47%), Gaps = 16/213 (7%)
Query: 179 SVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSI-------TYNDHPYSKSLKSKI 231
++ GE+ +MG SGSGK+T++ LL+ RL+EPT G + +D + + KI
Sbjct: 50 AIEEGEIFVIMGLSGSGKSTMVRLLN-RLIEPTRGQVLIDGVDIAKISDAELREVRRKKI 108
Query: 232 GFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGS 291
V Q L PH+TV + + + L ++++EK A+D + ++GLE S
Sbjct: 109 AMVFQSFALMPHMTVLDNTAFG--MELAGINAEERREK-ALDALRQVGLEN-----YAHS 160
Query: 292 FVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTT 351
+ +SGG R+RV + + INP +L +DE S LD + L + + +
Sbjct: 161 YPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVF 220
Query: 352 IHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384
I D++ ++ G ++ G E +
Sbjct: 221 ISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEIL 253
|
Length = 400 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 77.9 bits (192), Expect = 6e-16
Identities = 60/237 (25%), Positives = 122/237 (51%), Gaps = 25/237 (10%)
Query: 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME 209
++F +V+Y KG + E ++ + G+ A++G +GSGK+TL+ ++ L++
Sbjct: 3 IRFDNVSY-TYQKG--TPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINA-LLK 58
Query: 210 PTVGGSITYND--------HPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNT 261
PT G ++T +D Y + ++ +IG V Q FP + E ++ P
Sbjct: 59 PTTG-TVTVDDITITHKTKDKYIRPVRKRIGMVFQ----FPESQLFEDTVEREIIFGPKN 113
Query: 262 LTKQQKE--KRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFL 319
E A ++ +LG R D M F +SGG+ +++ I + + +NP ++ L
Sbjct: 114 FKMNLDEVKNYAHRLLMDLGFSR--DVMSQSPF--QMSGGQMRKIAIVSILAMNPDIIVL 169
Query: 320 DEPTSGLDSTTALRIVQMLQDIA-EAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLL 375
DEPT+GLD + +++++L+ + + KT++ H + + D++I++ +GS++
Sbjct: 170 DEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHD-MNEVARYADEVIVMKEGSIV 225
|
Length = 286 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 78.2 bits (193), Expect = 8e-16
Identities = 52/211 (24%), Positives = 102/211 (48%), Gaps = 40/211 (18%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITY---NDH-------- 221
L+ ++ +N GE +A++G +GSGKTT + L+ L+ T G+I + ++
Sbjct: 23 LDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDT--GTIEWIFKDEKNKKKTKEK 80
Query: 222 -----------PYSKSLKS------KIGFVTQ--DDVLFPHLTVKETLTYAALLRLPNTL 262
K +K ++G V Q + LF T+++ + + + +
Sbjct: 81 EKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQ-TIEKDIIFGPV---SMGV 136
Query: 263 TKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEP 322
+K++ +KRA I +GL+ + + F +SGG+++RV + + + P L DEP
Sbjct: 137 SKEEAKKRAAKYIELVGLD--ESYLQRSPF--ELSGGQKRRVALAGILAMEPDFLVFDEP 192
Query: 323 TSGLDSTTALRIVQMLQDIAEAGKTVVTTIH 353
T+GLD I+++ ++ + GKT++ H
Sbjct: 193 TAGLDPQGVKEILEIFDNLNKQGKTIILVTH 223
|
Length = 305 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 78.2 bits (193), Expect = 1e-15
Identities = 74/243 (30%), Positives = 121/243 (49%), Gaps = 27/243 (11%)
Query: 159 VILKGMTSSEEKD-ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGG-SI 216
V+LK +T + +++ + ++ G ++ L+GPSG GKTT+L L++G L +PT G I
Sbjct: 7 VVLKNITKRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAG-LEKPTEGQIFI 65
Query: 217 TYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYA-ALLRLPNTLTKQQKEKRAIDVI 275
D + + I V Q LFPH+++ E + Y +L +P KQ+ K A++++
Sbjct: 66 DGEDVTHRSIQQRDICMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRV-KEALELV 124
Query: 276 NELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIV 335
+ G E +V +SGG+++RV + +I+ P +L DEP S LD+ LR
Sbjct: 125 DLAGFED--------RYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDAN--LR-R 173
Query: 336 QMLQDIAEAGKTVVTT---IHQPSSRLFHKFDKLILLGKGSL--------LYFGKASEAM 384
M + I E + T + S F D +I++ KG + LY AS M
Sbjct: 174 SMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQPASRFM 233
Query: 385 AYF 387
A F
Sbjct: 234 ASF 236
|
Length = 351 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 76.4 bits (188), Expect = 1e-15
Identities = 57/201 (28%), Positives = 97/201 (48%), Gaps = 26/201 (12%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME----PTVGGSI------TYNDH 221
++ G+ + V ALMGPSG GK+TLL + RL+E V G + Y+
Sbjct: 19 VIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFN-RLLELNEEARVEGEVRLFGRNIYSPD 77
Query: 222 PYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL- 280
++ ++G V Q FPHLT+ + + L N L K +KE +D E L
Sbjct: 78 VDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKL---NGLVKSKKE---LDERVEWALK 131
Query: 281 -----ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIV 335
+ +D + + +SGG+R+R+ I + + P +L +DEPT+ +D +I
Sbjct: 132 KAALWDEVKDRL--NDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIE 189
Query: 336 QMLQDIAEAGKTVVTTIHQPS 356
++L ++ + T+V H P+
Sbjct: 190 ELLFELKKE-YTIVLVTHSPA 209
|
Length = 253 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 78.7 bits (194), Expect = 2e-15
Identities = 55/192 (28%), Positives = 94/192 (48%), Gaps = 16/192 (8%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGG----------SITYNDHP 222
++ ++ V GE+ ++G SG+GKTTL +++G ++EPT G +T
Sbjct: 300 VDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAG-VLEPTSGEVNVRVGDEWVDMTKPGPD 358
Query: 223 YSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER 282
K IG + Q+ L+PH TV + LT A L LP+ L + +A+ + +G +
Sbjct: 359 GRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELAR----MKAVITLKMVGFDE 414
Query: 283 CQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQ-MLQDI 341
+ I + +S GER RV + +I P ++ LDEPT +D T + + +L+
Sbjct: 415 EKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAR 474
Query: 342 AEAGKTVVTTIH 353
E +T + H
Sbjct: 475 EEMEQTFIIVSH 486
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 78.4 bits (194), Expect = 3e-15
Identities = 56/213 (26%), Positives = 93/213 (43%), Gaps = 30/213 (14%)
Query: 128 EDIEAGTRERPKFQTEPTLPIYLKFTD-VTYKVIL--KGMTSS--EEKDILNGITGSVNP 182
E +EA E + L K++L + ++ + +L ++ ++
Sbjct: 288 EKLEARLAEERPVEEGKPLAFRFPPPGKRLGKLVLEFENVSKGYDGGRLLLKDLSFRIDR 347
Query: 183 GEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQD-DVLF 241
G+ +A++GP+G+GK+TLL LL+G L P G++ + KIG+ Q D L
Sbjct: 348 GDRIAIVGPNGAGKSTLLKLLAGEL-GPLS-GTVKVGE-------TVKIGYFDQHRDELD 398
Query: 242 PHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGER 301
P TV E L+ E+ + G + V +SGGE+
Sbjct: 399 PDKTVLEELSEGF---------PDGDEQEVRAYLGRFGF--TGEDQ--EKPVGVLSGGEK 445
Query: 302 KRVCIGNEIIINPSLLFLDEPTSGLD--STTAL 332
R+ + ++ P+LL LDEPT+ LD S AL
Sbjct: 446 ARLLLAKLLLQPPNLLLLDEPTNHLDIESLEAL 478
|
Length = 530 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 78.4 bits (193), Expect = 3e-15
Identities = 78/270 (28%), Positives = 125/270 (46%), Gaps = 41/270 (15%)
Query: 129 DIEAGTRERPKFQTEPTLPIY---LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEV 185
D+E +R + P LP ++F +T+ +S + + ++ G+
Sbjct: 311 DLEDSVFQREEPADAPELPNVKGAVEFRHITF-----EFANSSQG--VFDVSFEAKAGQT 363
Query: 186 LALMGPSGSGKTTLLNLLSGRLMEPTVG---------GSITYNDHPYSKSLKSKIGFVTQ 236
+A++GP+G+GKTTL+NLL R+ +PTVG ++T +SL+ I V Q
Sbjct: 364 VAIVGPTGAGKTTLINLLQ-RVYDPTVGQILIDGIDINTVT------RESLRKSIATVFQ 416
Query: 237 DDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQ--DTMIGGSFVR 294
D LF +++E + + + K A D I L+R DT++G R
Sbjct: 417 DAGLFNR-SIRENIRLGREGATDEEVYEAAKAAAAHDFI----LKRSNGYDTLVGE---R 468
Query: 295 G--VSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTI 352
G +SGGER+R+ I I+ N +L LDE TS LD T R V+ D +T
Sbjct: 469 GNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEAR-VKNAIDALRKNRTTFIIA 527
Query: 353 HQPSSRLFHKFDKLILLGKGSLLYFGKASE 382
H+ S+ D ++ L +G L+ G E
Sbjct: 528 HRLST--VRNADLVLFLDQGRLIEKGSFQE 555
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 76.3 bits (187), Expect = 3e-15
Identities = 67/212 (31%), Positives = 105/212 (49%), Gaps = 19/212 (8%)
Query: 180 VNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVG----GSITYNDHPYSKSLK---SKIG 232
V G AL+G +GSGK+TLL L+G L++PT G G I + K +K K+G
Sbjct: 29 VKKGSYTALIGHTGSGKSTLLQHLNG-LLQPTEGKVTVGDIVVSSTSKQKEIKPVRKKVG 87
Query: 233 FVTQDDVLFPHLTVKETLTYAALLRLPNT--LTKQQKEKRAIDVINELGLERCQDTMIGG 290
V Q FP + E + P + K++ EK A + + +GL +
Sbjct: 88 VVFQ----FPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLAD--EFWEKS 141
Query: 291 SFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVT 350
F +SGG+ +RV I + + P +L LDEPT+GLD + ++Q+ + I ++G+TVV
Sbjct: 142 PF--ELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVL 199
Query: 351 TIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382
H + D + LL KG ++ G S+
Sbjct: 200 VTHLMDDVADYA-DYVYLLEKGHIISCGTPSD 230
|
Length = 288 |
| >gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 77.2 bits (191), Expect = 3e-15
Identities = 59/173 (34%), Positives = 91/173 (52%), Gaps = 25/173 (14%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSK- 230
++ GI V GE + L+GPSG GK+TLL +++G +E G I ++ L+
Sbjct: 19 VIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAG--LERITSGEIWIGGRVVNE-LEPAD 75
Query: 231 --IGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDV--INELG--LERCQ 284
I V Q+ L+PH++V+E + Y L++ K + E+R + I EL L+R
Sbjct: 76 RDIAMVFQNYALYPHMSVRENMAYG--LKIRGM-PKAEIEERVAEAARILELEPLLDRKP 132
Query: 285 DTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQM 337
R +SGG+R+RV +G I+ P++ DEP S LD+ LR VQM
Sbjct: 133 ---------RELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDA--KLR-VQM 173
|
Length = 356 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 76.2 bits (188), Expect = 3e-15
Identities = 69/243 (28%), Positives = 117/243 (48%), Gaps = 27/243 (11%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYND-HPYSKSL 227
EK L+ + + GE + L+G +GSGK+TL+ L+G L++PT G I + K +
Sbjct: 19 EKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNG-LLKPT-SGKIIIDGVDITDKKV 76
Query: 228 K-----SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTL--TKQQKEKRAIDVINELGL 280
K K+G V Q +P + E + P L ++++ E R +N +GL
Sbjct: 77 KLSDIRKKVGLVFQ----YPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGL 132
Query: 281 ERCQDTMIGGS-FVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQ 339
+ + S F +SGG+++RV I + + P +L LDEPT+GLD I+ ++
Sbjct: 133 DY--EDYKDKSPF--ELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIK 188
Query: 340 DIAEAGK-TVVTTIHQPSSRLFHKF-DKLILLGKGSLLYFGKASEA---MAYFSSIGCS- 393
++ + T++ H S K D++I++ KG G E + SIG +
Sbjct: 189 ELHKEYNMTIILVSH--SMEDVAKLADRIIVMNKGKCELQGTPREVFKEVETLESIGLAV 246
Query: 394 PQI 396
PQ+
Sbjct: 247 PQV 249
|
Length = 287 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 77.2 bits (190), Expect = 3e-15
Identities = 60/185 (32%), Positives = 85/185 (45%), Gaps = 27/185 (14%)
Query: 179 SVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDH------PYSKSLKSKIG 232
++ GE+ AL+G SG GK+TLL +L+G E G I + PY + I
Sbjct: 41 TIYKGEIFALLGASGCGKSTLLRMLAG--FEQPTAGQIMLDGVDLSHVPPYQRP----IN 94
Query: 233 FVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRA--IDVINE-LGLERCQDTMIG 289
+ Q LFPH+TV++ + + KQ K +A +NE LGL Q+
Sbjct: 95 MMFQSYALFPHMTVEQNIAFG---------LKQDKLPKAEIASRVNEMLGLVHMQE--FA 143
Query: 290 GSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTV 348
+SGG+R+RV + + P LL LDEP LD R+ + DI E G T
Sbjct: 144 KRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTC 203
Query: 349 VTTIH 353
V H
Sbjct: 204 VMVTH 208
|
Length = 377 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 74.1 bits (182), Expect = 3e-15
Identities = 50/193 (25%), Positives = 85/193 (44%), Gaps = 19/193 (9%)
Query: 166 SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYN---DHP 222
+ + + +G++ ++ GE L + GP+GSGKTTLL +L+G L P G + N
Sbjct: 9 ERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAG-LSPPL-AGRVLLNGGPLDF 66
Query: 223 YSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER 282
S+ + ++ + L+V E L + + +Q +E A+ + G E
Sbjct: 67 QRDSIARGLLYLGHAPGIKTTLSVLENLRFWH----ADHSDEQVEE--ALARVGLNGFED 120
Query: 283 CQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA 342
V +S G+++RV + ++ L LDEPT+ LD R + +
Sbjct: 121 RP--------VAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHC 172
Query: 343 EAGKTVVTTIHQP 355
G VV T HQ
Sbjct: 173 ARGGMVVLTTHQD 185
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 76.7 bits (189), Expect = 3e-15
Identities = 60/220 (27%), Positives = 103/220 (46%), Gaps = 16/220 (7%)
Query: 176 ITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDH-PYS--KSLKSKIG 232
I+ + GE++ +G +G+GK+T L +L+G L+ PT G + N P+ + IG
Sbjct: 43 ISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLL-PT-SGKVRVNGKDPFRRREEYLRSIG 100
Query: 233 FVT-QDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGS 291
V Q L+ L ++L +L+L + + +R + L LE
Sbjct: 101 LVMGQKLQLWWDLPALDSLE---VLKLIYEIPDDEFAERLDFLTEILDLEGFLKWP---- 153
Query: 292 FVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI-AEAGKTVVT 350
VR +S G+R R + ++ P +LFLDEPT GLD I + L++ E TV+
Sbjct: 154 -VRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLL 212
Query: 351 TIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSI 390
T H + D+++L+ +G L++ G ++ F
Sbjct: 213 TTHIFDD-IATLCDRVLLIDQGQLVFDGTLAQLQEQFGPY 251
|
Length = 325 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 75.3 bits (186), Expect = 3e-15
Identities = 62/200 (31%), Positives = 89/200 (44%), Gaps = 48/200 (24%)
Query: 182 PGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP------YSKS-------LK 228
PGEVL ++G SGSGKTTLLN LS RL P G + Y Y+ S L+
Sbjct: 31 PGEVLGIVGESGSGKTTLLNALSARLA-PD-AGEVHYRMRDGQLRDLYALSEAERRRLLR 88
Query: 229 SKIGFVTQD--DVLFPHLT----VKETLT------YAALLRLPNTLTKQQKEKRAIDVIN 276
++ GFV Q D L ++ + E L Y + A D +
Sbjct: 89 TEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDI------------RATAGDWLE 136
Query: 277 --ELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRI 334
E+ R D SGG ++R+ I ++ +P L+F+DEPT GLD + R+
Sbjct: 137 RVEIDAARIDDL------PTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARL 190
Query: 335 VQMLQD-IAEAGKTVVTTIH 353
+ +L+ + E G VV H
Sbjct: 191 LDLLRGLVRELGLAVVIVTH 210
|
Length = 258 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 75.1 bits (185), Expect = 5e-15
Identities = 59/200 (29%), Positives = 94/200 (47%), Gaps = 26/200 (13%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLS--GRLMEPT-VGGSITYNDHP-YS 224
+K L I+ + V A +GPSG GK+TLL + L++ + G I + Y
Sbjct: 37 DKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYD 96
Query: 225 K-----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG 279
K L+ ++G V Q FP ++ E + Y LRL +R +D E
Sbjct: 97 KKVDVAELRRRVGMVFQRPNPFPK-SIYENVVYG--LRLQGI-----NNRRVLDEAVERS 148
Query: 280 LERC------QDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALR 333
L +D + +F G+SGG+++R+ I I I P +L LDEPTS LD + L+
Sbjct: 149 LRGAALWDEVKDRLHENAF--GLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLK 206
Query: 334 IVQMLQDIAEAGKTVVTTIH 353
I +++ ++ T+V H
Sbjct: 207 IEELITELKSK-YTIVIVTH 225
|
Length = 272 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 73.7 bits (182), Expect = 5e-15
Identities = 50/179 (27%), Positives = 84/179 (46%), Gaps = 14/179 (7%)
Query: 179 SVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDD 238
++N GE++ + GP+G+GKT+LL +L+G L P G + + P + D
Sbjct: 23 TLNAGELVQIEGPNGAGKTSLLRILAG-LARPD-AGEVLWQGEPIRRQRDE-----YHQD 75
Query: 239 VLF-PHLT-VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGV 296
+L+ H +K LT LR L ++ + + ++GL +D VR +
Sbjct: 76 LLYLGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFEDVP-----VRQL 130
Query: 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQP 355
S G+++RV + + L LDEP + +D R+ +L AE G V+ T HQ
Sbjct: 131 SAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQD 189
|
Length = 204 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 76.0 bits (187), Expect = 5e-15
Identities = 64/242 (26%), Positives = 106/242 (43%), Gaps = 39/242 (16%)
Query: 166 SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVG----GSITYNDH 221
E LN I+ + ++ ++G SGSGK+TL+ +G L++ G G I D
Sbjct: 35 QENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNG-LIKSKYGTIQVGDIYIGDK 93
Query: 222 PYS---------------KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTL--TK 264
+ K L+ ++ V Q FP + + ++ P L K
Sbjct: 94 KNNHELITNPYSKKIKNFKELRRRVSMVFQ----FPEYQLFKDTIEKDIMFGPVALGVKK 149
Query: 265 QQKEKRAIDVINELGLERCQDTMIGGSFVR----GVSGGERKRVCIGNEIIINPSLLFLD 320
+ +K A +N++GL S++ G+SGG+++RV I + I P +L D
Sbjct: 150 SEAKKLAKFYLNKMGL--------DDSYLERSPFGLSGGQKRRVAIAGILAIQPEILIFD 201
Query: 321 EPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 380
EPT+GLD ++Q++ D KTV H L D++I++ KG +L G
Sbjct: 202 EPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVL-EVADEVIVMDKGKILKTGTP 260
Query: 381 SE 382
E
Sbjct: 261 YE 262
|
Length = 320 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 73.9 bits (182), Expect = 5e-15
Identities = 47/192 (24%), Positives = 84/192 (43%), Gaps = 16/192 (8%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---K 225
E+ + + ++ ++N GE L + GP+G+GKTTLL +L+G L+ P G + + P +
Sbjct: 14 ERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAG-LLRPD-AGEVYWQGEPIQNVRE 71
Query: 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQD 285
S + ++ + LT E L + + + ++GL +D
Sbjct: 72 SYHQALLYLGHQPGIKTELTALENLHFW------QRFHGSGNAATIWEALAQVGLAGLED 125
Query: 286 TMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAG 345
V +S G+++RV + + L LDEP + LD + ++ A G
Sbjct: 126 LP-----VGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQG 180
Query: 346 KTVVTTIHQPSS 357
V+ T HQP
Sbjct: 181 GIVLLTTHQPLP 192
|
Length = 209 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 75.2 bits (185), Expect = 5e-15
Identities = 63/198 (31%), Positives = 102/198 (51%), Gaps = 20/198 (10%)
Query: 165 TSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS 224
+ S K+ LN I +A++GP+G+GK+TL +G +++PT GS+ P +
Sbjct: 12 SYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNG-ILKPT-SGSVLIRGEPIT 69
Query: 225 KS----LKSKIGFVTQ--DDVLFPHLTVKETLTYAALLRLPNT-LTKQQKEKRAIDVINE 277
K ++ +G V Q DD +F TV++ + + + N L ++ R ++
Sbjct: 70 KENIREVRKFVGLVFQNPDDQIFSP-TVEQDIAFGPI----NLGLDEETVAHRVSSALHM 124
Query: 278 LGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQM 337
LGLE +D + +SGGE+KRV I I + P +L LDEPT+GLD ++
Sbjct: 125 LGLEELRDRV-----PHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDF 179
Query: 338 LQDIAEA-GKTVVTTIHQ 354
L D+ E G TV+ + HQ
Sbjct: 180 LNDLPETYGMTVIFSTHQ 197
|
Length = 277 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 74.1 bits (182), Expect = 5e-15
Identities = 53/188 (28%), Positives = 93/188 (49%), Gaps = 17/188 (9%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK------- 225
L G+T + PGE+ L G SG+GK+TLL L+ G +E G I ++ H ++
Sbjct: 18 LQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICG--IERPSAGKIWFSGHDITRLKNREVP 75
Query: 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQD 285
L+ +IG + QD L TV + + ++ + +++ A+D + L +
Sbjct: 76 FLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAK--- 132
Query: 286 TMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAG 345
+F +SGGE++RV I ++ P++L DEPT LD + I+++ ++ G
Sbjct: 133 -----NFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVG 187
Query: 346 KTVVTTIH 353
TV+ H
Sbjct: 188 VTVLMATH 195
|
Length = 222 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 74.8 bits (184), Expect = 5e-15
Identities = 63/192 (32%), Positives = 93/192 (48%), Gaps = 32/192 (16%)
Query: 182 PGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP------YSKS-------LK 228
PGEVL ++G SGSGKTTLL +SGRL P G++TY Y+ S L+
Sbjct: 31 PGEVLGIVGESGSGKTTLLKCISGRLT-PD-AGTVTYRMRDGQPRDLYTMSEAERRRLLR 88
Query: 229 SKIGFVTQD--DVLFPHLT----VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER 282
++ GFV Q+ D L ++ + E L N + Q + E+ L+R
Sbjct: 89 TEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEV----EIDLDR 144
Query: 283 CQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQD-I 341
D R SGG ++R+ I ++ P L+F+DEPT GLD + R++ +L+ +
Sbjct: 145 IDD------LPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLV 198
Query: 342 AEAGKTVVTTIH 353
E G VV H
Sbjct: 199 RELGLAVVIVTH 210
|
Length = 258 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 77.6 bits (192), Expect = 5e-15
Identities = 57/208 (27%), Positives = 102/208 (49%), Gaps = 30/208 (14%)
Query: 179 SVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS----KSLKSKIGFV 234
++ G+ +AL+GPSG+GKT+LLN L G L GS+ N +S + + +V
Sbjct: 372 TLPAGQRIALVGPSGAGKTSLLNALLGFL---PYQGSLKINGIELRELDPESWRKHLSWV 428
Query: 235 TQDDVLFPHLTVKETLTYAALLRLPNTLTKQQ-----KEKRAIDVINEL--GLERCQDTM 287
Q+ L H T+++ + LL P+ + +Q + + + L GL DT
Sbjct: 429 GQNPQLP-HGTLRDNV----LLGNPD-ASDEQLQQALENAWVSEFLPLLPQGL----DTP 478
Query: 288 IG-GSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGK 346
IG + G+S G+ +R+ + ++ LL LDEPT+ LD+ + ++Q L A +
Sbjct: 479 IGDQA--AGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNA-ASRRQ 535
Query: 347 TVVTTIHQPSSRLFHKFDKLILLGKGSL 374
T + HQ ++D++ ++ G +
Sbjct: 536 TTLMVTHQLED--LAQWDQIWVMQDGQI 561
|
Length = 588 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 77.1 bits (190), Expect = 6e-15
Identities = 65/261 (24%), Positives = 108/261 (41%), Gaps = 52/261 (19%)
Query: 168 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYN-------- 219
+ K++L I+ ++ GEVL ++G SG+GK+ L+++L G G I Y+
Sbjct: 11 DGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCG 70
Query: 220 -----------------------------DHPYSKSLKSKIGFVTQDD-VLFPHLTVKET 249
+ ++ +I + Q L+ TV +
Sbjct: 71 YVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDN 130
Query: 250 LTYAALLRLPNTLTKQQKE--KRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307
+ L + + KE RA+D+I + L + T I R +SGGE++RV +
Sbjct: 131 V-----LEALEEIGYEGKEAVGRAVDLIEMVQLSH-RITHIA----RDLSGGEKQRVVLA 180
Query: 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA-EAGKTVVTTIHQPSSRLFHKFDKL 366
++ P L DEPT LD TA + L++ +G ++V T H P + DK
Sbjct: 181 RQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEV-IEDLSDKA 239
Query: 367 ILLGKGSLLYFGKASEAMAYF 387
I L G + G E +A F
Sbjct: 240 IWLENGEIKEEGTPDEVVAVF 260
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 74.3 bits (182), Expect = 7e-15
Identities = 50/193 (25%), Positives = 92/193 (47%), Gaps = 23/193 (11%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLL-------NLLSGRLMEPTVGGSITYNDHP-YS 224
L GI+ + V+A +GPSG GK+T L +L+ +E G I + Y
Sbjct: 19 LKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLE----GEIRIDGRNIYD 74
Query: 225 KS-----LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG 279
K L+ +G V Q FP ++ E + Y LR+ +R + +
Sbjct: 75 KGVQVDELRKNVGMVFQRPNPFPK-SIFENVAYG--LRVNGVKDNAFIRQRVEETLKGAA 131
Query: 280 L-ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQML 338
L + +D + +F +SGG+++R+CI + ++PS+L +DEP S LD + ++ +++
Sbjct: 132 LWDEVKDKLKESAF--ALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELI 189
Query: 339 QDIAEAGKTVVTT 351
++ + V+ T
Sbjct: 190 HELKKDYTIVIVT 202
|
Length = 250 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 74.5 bits (183), Expect = 7e-15
Identities = 55/210 (26%), Positives = 107/210 (50%), Gaps = 16/210 (7%)
Query: 183 GEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP-----YSKSLKSKIGFVTQD 237
G+ LA++G +GSGK+TL +L+G ++EPT G I NDHP YS K +I + QD
Sbjct: 39 GQTLAIIGENGSGKSTLAKMLAG-MIEPT-SGEILINDHPLHFGDYSFRSK-RIRMIFQD 95
Query: 238 --DVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRG 295
L P L + + L LRL L +Q+ K+ + + +GL +
Sbjct: 96 PNTSLNPRLRIGQILD--FPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANY----YPHM 149
Query: 296 VSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQP 355
++ G+++RV + +I+ P ++ DE + LD + +++ ++ ++ E + Q
Sbjct: 150 LAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQH 209
Query: 356 SSRLFHKFDKLILLGKGSLLYFGKASEAMA 385
+ H D+++++ +G ++ G ++ +A
Sbjct: 210 IGMIKHISDQVLVMHEGEVVERGSTADVLA 239
|
Length = 267 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 76.7 bits (189), Expect = 1e-14
Identities = 64/198 (32%), Positives = 112/198 (56%), Gaps = 21/198 (10%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225
+ L + ++ PG++L + GP+GSGK+TLL+L+ R + + G I ++D P +K
Sbjct: 327 DHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQ-RHFDVS-EGDIRFHDIPLTKLQL 384
Query: 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRA-IDVINE--LGLE 281
S +S++ V+Q LF TV + AL R P+ T+Q+ E A + +++ L L
Sbjct: 385 DSWRSRLAVVSQTPFLFSD-TVANNI---ALGR-PDA-TQQEIEHVARLASVHDDILRLP 438
Query: 282 RCQDTMIGGSFVRGV--SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQ 339
+ DT +G RGV SGG+++R+ I +++N +L LD+ S +D T +I+ L+
Sbjct: 439 QGYDTEVGE---RGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLR 495
Query: 340 DIAEAGKTVVTTIHQPSS 357
E G+TV+ + H+ S+
Sbjct: 496 QWGE-GRTVIISAHRLSA 512
|
Length = 569 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 72.1 bits (178), Expect = 2e-14
Identities = 58/224 (25%), Positives = 95/224 (42%), Gaps = 49/224 (21%)
Query: 166 SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK 225
E L I V GE++A++GP GSGK++LL+ L G L + GS++
Sbjct: 14 EQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGEL--EKLSGSVSVP------ 65
Query: 226 SLKSKIGFVTQDDVLFPHL---TVKETLTYAALLRLPNTL-TKQQKEKRAIDVINELGLE 281
I +V+Q P + T++E N L K E+R VI LE
Sbjct: 66 ---GSIAYVSQ----EPWIQNGTIRE-----------NILFGKPFDEERYEKVIKACALE 107
Query: 282 RCQD---------TMIGGSFVRGV--SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTT 330
D T IG +G+ SGG+++R+ + + + + LD+P S +D+
Sbjct: 108 P--DLEILPDGDLTEIG---EKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHV 162
Query: 331 ALRIVQM-LQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGS 373
I + + + KT + HQ L D++++L G
Sbjct: 163 GRHIFENCILGLLLNNKTRILVTHQLQ--LLPHADQIVVLDNGR 204
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 72.6 bits (178), Expect = 2e-14
Identities = 58/198 (29%), Positives = 99/198 (50%), Gaps = 26/198 (13%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSIT-----YNDHPY 223
E L I + +V AL+GPSG GK+TLL L+ R+ + G IT + Y
Sbjct: 15 ENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLN-RMNDLIEGVKITGKLTMDGEDIY 73
Query: 224 S----KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG 279
L+ K+G V Q FP +++ E + Y LR + K+K+ +D + E
Sbjct: 74 GNIDVADLRIKVGMVFQKPNPFP-MSIYENVAYG--LR-----AQGIKDKKVLDEVVERS 125
Query: 280 L------ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALR 333
L + +D + +F G+SGG+++R+CI I + P ++ +DEPTS LD +
Sbjct: 126 LRGAALWDEVKDRLKSHAF--GLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHK 183
Query: 334 IVQMLQDIAEAGKTVVTT 351
I ++++++ + V+ T
Sbjct: 184 IEELMEELKKNYTIVIVT 201
|
Length = 249 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 75.2 bits (185), Expect = 2e-14
Identities = 64/279 (22%), Positives = 121/279 (43%), Gaps = 47/279 (16%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-----SL 227
L + +V PGE+ AL+G +G+GK+TL+ +LSG + EPT G+IT N+ Y+K +
Sbjct: 21 LKSVNLTVYPGEIHALLGENGAGKSTLMKVLSG-IHEPT-KGTITINNINYNKLDHKLAA 78
Query: 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLP-------NTLTKQQKEKRAIDVINELGL 280
+ IG + Q+ + LTV E L R N + ++ RA ++ +GL
Sbjct: 79 QLGIGIIYQELSVIDELTVLENLYIG---RHLTKKVCGVNIIDWREMRVRAAMMLLRVGL 135
Query: 281 ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQD 340
+ D V +S ++ + I ++++ ++ +DEPTS L + + ++
Sbjct: 136 KVDLDE-----KVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQ 190
Query: 341 IAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIGCSPQIAMNP 400
+ + G +V H+ + + D+ ++ GS + G S
Sbjct: 191 LRKEGTAIVYISHK-LAEIRRICDRYTVMKDGSSVCSGMVS------------------- 230
Query: 401 AEFLLDLANGNLHDVSVPSELQDRVQTENSENDTANGKP 439
D++N ++ + V ELQ+R +
Sbjct: 231 -----DVSNDDIVRLMVGRELQNRFNAMKENVSNLAHET 264
|
Length = 510 |
| >gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Score = 72.8 bits (179), Expect = 3e-14
Identities = 60/187 (32%), Positives = 94/187 (50%), Gaps = 35/187 (18%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL- 227
E +IL G+ S+N GE+ A+MGP+GSGK+TL +++G + G I + +S+
Sbjct: 19 ENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKG----ESIL 74
Query: 228 ------KSKIG-FVT-QDDVLFPHLTVKETLTYAALLRLP-NTLTKQQ--KEKRAI---D 273
++ +G F+ Q + P ++ A LRL N+ K Q E + +
Sbjct: 75 DLEPEERAHLGIFLAFQYPIEIP------GVSNADFLRLAYNSKRKFQGLPELDPLEFLE 128
Query: 274 VINE-LGLERCQDTMIGGSFVRGVSGGERKRVCIGNEI----IINPSLLFLDEPTSGLDS 328
+INE L L + + + G SGGE+KR NEI +++ L LDE SGLD
Sbjct: 129 IINEKLKLVGMDPSFLSRNVNEGFSGGEKKR----NEILQMALLDSELAILDETDSGLD- 183
Query: 329 TTALRIV 335
AL+I+
Sbjct: 184 IDALKII 190
|
Length = 252 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 75.1 bits (185), Expect = 3e-14
Identities = 49/177 (27%), Positives = 90/177 (50%), Gaps = 22/177 (12%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSK- 230
+L GI +++ GEV AL+G +G+GK+TL+ +++G + P G++ +P ++ +K
Sbjct: 26 VLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAG--IVPPDSGTLEIGGNPCARLTPAKA 83
Query: 231 ----IGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDT 286
I V Q+ +LFP+L+VKE + L LP Q ++ ++ LG + D+
Sbjct: 84 HQLGIYLVPQEPLLFPNLSVKENI----LFGLPKR---QASMQKMKQLLAALGCQLDLDS 136
Query: 287 MIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGL---DSTTALRIVQMLQD 340
G V +R+ V I ++ + +L LDEPT+ L ++ ++ L
Sbjct: 137 SAGSLEV-----ADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLA 188
|
Length = 510 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 72.9 bits (179), Expect = 3e-14
Identities = 61/213 (28%), Positives = 105/213 (49%), Gaps = 21/213 (9%)
Query: 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME 209
+KF +V Y I T E+K + N I+ + G +AL+G +GSGK+TL+ + L++
Sbjct: 3 IKFENVDY--IYSPGTPMEKKGLDN-ISFELEEGSFVALVGHTGSGKSTLMQHFNA-LLK 58
Query: 210 PT------VGGSITYNDHPYS-KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTL 262
P+ G IT + K L+ K+ V Q FP + E + P
Sbjct: 59 PSSGTITIAGYHITPETGNKNLKKLRKKVSLVFQ----FPEAQLFENTVLKDVEFGPKNF 114
Query: 263 --TKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLD 320
++ + +++A+ + ++GL +D + F +SGG+ +RV I + P +L LD
Sbjct: 115 GFSEDEAKEKALKWLKKVGLS--EDLISKSPF--ELSGGQMRRVAIAGVMAYEPEILCLD 170
Query: 321 EPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIH 353
EP +GLD ++Q+ +D +AG TV+ H
Sbjct: 171 EPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTH 203
|
Length = 287 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 72.0 bits (176), Expect = 4e-14
Identities = 56/221 (25%), Positives = 107/221 (48%), Gaps = 19/221 (8%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLL---NLLSGRLMEPTVGGSITY-NDHPYSK--- 225
L+GI+ E+ AL+GPSG GK+T L N ++ + + G I + + Y
Sbjct: 20 LHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMD 79
Query: 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL-ER 282
L+ ++G V Q FP +V + + Y L++ K+ ++R + + + + +
Sbjct: 80 LVELRKEVGMVFQQPTPFP-FSVYDNVAYG--LKIAGVKDKELIDQRVEESLKQAAIWKE 136
Query: 283 CQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA 342
+D + + + SGG+++R+CI + + P ++ LDEPTS LD ++ I + L ++
Sbjct: 137 TKDNLDRNA--QAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELK 194
Query: 343 EAGKTVVTTIH-QPSSRLFHKFDKLILLGKGSLLYFGKASE 382
++ T + Q + R+ D+ L G L+ G E
Sbjct: 195 HQYTFIMVTHNLQQAGRI---SDQTAFLMNGDLIEAGPTEE 232
|
Length = 251 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 69.2 bits (170), Expect = 5e-14
Identities = 26/90 (28%), Positives = 52/90 (57%), Gaps = 14/90 (15%)
Query: 151 KFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP 210
+ +++++ + L+ ++ ++ GE++AL+GP+GSGK+TLL ++G L++P
Sbjct: 1 EIENLSFRY--------GGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAG-LLKP 51
Query: 211 TVGGSITYNDHPYSKS----LKSKIGFVTQ 236
T G I + +K L+ +IG+V Q
Sbjct: 52 T-SGEILIDGKDIAKLPLEELRRRIGYVPQ 80
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 72.7 bits (179), Expect = 6e-14
Identities = 49/168 (29%), Positives = 86/168 (51%), Gaps = 25/168 (14%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYN-------DHPYSK 225
L+G++ ++ G+ LA++G SG GK+TL LL+ ++E GG + Y D K
Sbjct: 31 LDGVSFTLERGKTLAVVGESGCGKSTLARLLT--MIETPTGGELYYQGQDLLKADPEAQK 88
Query: 226 SLKSKIGFVTQDDV--LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL--E 281
L+ KI V Q+ L P V + L L + +L+ ++ ++A+ ++ ++GL E
Sbjct: 89 LLRQKIQIVFQNPYGSLNPRKKVGQIL--EEPLLINTSLSAAERREKALAMMAKVGLRPE 146
Query: 282 RCQ--DTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLD 327
M SGG+R+R+ I ++++P ++ DEP S LD
Sbjct: 147 HYDRYPHMF--------SGGQRQRIAIARALMLDPDVVVADEPVSALD 186
|
Length = 327 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 71.3 bits (175), Expect = 6e-14
Identities = 52/160 (32%), Positives = 86/160 (53%), Gaps = 24/160 (15%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228
++ +L+ ++ + PG++L L+GP+G+GK+TL+ ++ G L+ P G I N K
Sbjct: 16 QRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLG-LVAPD-EGVIKRNG-------K 66
Query: 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRL-PNTLTKQQKEKRAIDVINELGLERCQDTM 287
+IG+V Q +L LT LRL P T K+ D++ L+R Q
Sbjct: 67 LRIGYVPQK----LYLDTTLPLTVNRFLRLRPGT-------KKE-DILP--ALKRVQAGH 112
Query: 288 IGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLD 327
+ + ++ +SGGE +RV + ++ P LL LDEPT G+D
Sbjct: 113 LIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVD 152
|
Length = 251 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 73.7 bits (182), Expect = 7e-14
Identities = 42/191 (21%), Positives = 81/191 (42%), Gaps = 21/191 (10%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP------YSKS 226
+ ++ V GE++ + G +G+G++ L+ +SG + G I N +
Sbjct: 274 VKDVSFEVRAGEIVGIAGVAGNGQSELVEAISG--LRKPASGRILLNGKDVLGRLSPRER 331
Query: 227 LKSKIGFVTQD---DVLFPHLTVKE-----TLTYAALLRLPNTLTKQQKEKRAIDVINEL 278
+ + +V +D L L++ E R + + K A ++I E
Sbjct: 332 RRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIR-KFARELIEEF 390
Query: 279 GLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQML 338
+ R + R +SGG ++++ + E+ P LL +PT GLD I + L
Sbjct: 391 DV-RAPSP---DAPARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERL 446
Query: 339 QDIAEAGKTVV 349
++ +AGK V+
Sbjct: 447 LELRDAGKAVL 457
|
Length = 501 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 69.1 bits (170), Expect = 8e-14
Identities = 54/194 (27%), Positives = 79/194 (40%), Gaps = 52/194 (26%)
Query: 180 VNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDV 239
+ PG+ L + GPSG+GK++L L+G + P G I L F+ Q
Sbjct: 24 IKPGDRLLITGPSGTGKSSLFRALAG--LWPWGSGRIGM--PEGEDLL-----FLPQRP- 73
Query: 240 LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299
P T++E L Y L SGG
Sbjct: 74 YLPLGTLREQLIYPWDDVL--------------------------------------SGG 95
Query: 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRL 359
E++R+ ++ P +FLDE TS LD + R+ Q+L+ E G TV++ H+PS
Sbjct: 96 EQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLK---ELGITVISVGHRPSLWK 152
Query: 360 FHKFDKLILLGKGS 373
FH L L G+G
Sbjct: 153 FHDR-VLDLDGEGG 165
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 71.2 bits (175), Expect = 9e-14
Identities = 53/192 (27%), Positives = 93/192 (48%), Gaps = 18/192 (9%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLL-------NLLSGRLMEPTV---GGSITYNDHP 222
L I + +V A +GPSG GK+TLL L + E + G +I
Sbjct: 29 LKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQD 88
Query: 223 YSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL-E 281
+ L++K+G V Q FP +++ + + + +RL L++ + ++R + + L
Sbjct: 89 IAL-LRAKVGMVFQKPTPFP-MSIYDNIAFG--VRLFEKLSRAEMDERVEWALTKAALWN 144
Query: 282 RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI 341
+D + +SGG+++R+CI I I P +L LDEP S LD + RI +++ ++
Sbjct: 145 EVKDKL--HQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITEL 202
Query: 342 AEAGKTVVTTIH 353
+ TVV H
Sbjct: 203 KQD-YTVVIVTH 213
|
Length = 260 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 70.5 bits (173), Expect = 9e-14
Identities = 47/166 (28%), Positives = 82/166 (49%), Gaps = 16/166 (9%)
Query: 166 SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS- 224
+ + ILN I+ S+ GE + GPSG GK+TLL +++ L+ PT G++ + S
Sbjct: 16 LAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVAS-LISPTS-GTLLFEGEDIST 73
Query: 225 ---KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE 281
+ + ++ + Q LF TV + L + +R +Q +D + L
Sbjct: 74 LKPEIYRQQVSYCAQTPTLFGD-TVYDNLIFPWQIR-----NQQPDPAIFLDDLERFALP 127
Query: 282 RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLD 327
DT++ + + +SGGE++R+ + + P +L LDE TS LD
Sbjct: 128 ---DTILTKN-IAELSGGEKQRISLIRNLQFMPKVLLLDEITSALD 169
|
Length = 225 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 70.8 bits (173), Expect = 9e-14
Identities = 58/224 (25%), Positives = 113/224 (50%), Gaps = 20/224 (8%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLL---NLLSGRLMEPTVGGSITYNDHPYSK 225
+K L I + ++ AL+G SG GK+T L N ++ ++ + + G +
Sbjct: 14 KKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAK--IDGLVEIEGKDVKN 71
Query: 226 ----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAI--DVINELG 279
+L+ +G V Q +F ++ E ++YA L + + K + E+ A+ D + ++G
Sbjct: 72 QDVVALRKNVGMVFQQPNVFVK-SIYENISYAPKL---HGMIKNKDEEEALVVDCLQKVG 127
Query: 280 L-ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQML 338
L E +D + + +SGG+++R+CI + I P LL LDEPTS LD ++ I ++L
Sbjct: 128 LFEEVKDKLKQNAL--ALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELL 185
Query: 339 QDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382
++++ ++ T + + + LG+ L+ FG++ E
Sbjct: 186 KELSHNLSMIMVTHNMQQGKRVADYTAFFHLGE--LIEFGESKE 227
|
Length = 246 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 73.3 bits (180), Expect = 1e-13
Identities = 52/211 (24%), Positives = 101/211 (47%), Gaps = 23/211 (10%)
Query: 153 TDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTV 212
+ ++V + +TS + K + + I+ SV GE+L G GSG+T L+N L G ++
Sbjct: 262 HETVFEV--RNVTSRDRKKVRD-ISFSVCRGEILGFAGLVGSGRTELMNCLFG--VDKRA 316
Query: 213 GGSITYN------DHPYSKSLKSKIGFVTQ---DDVLFPHLTVKETLTYAALLRLPN--- 260
GG I N P ++K + ++T+ D+ FP+ ++ + + + L+
Sbjct: 317 GGEIRLNGKDISPRSPLD-AVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKG 375
Query: 261 --TLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLF 318
L + E+R + EL +C + +SGG +++V I + P ++
Sbjct: 376 AMGLFHEVDEQRTAENQRELLALKCHSV---NQNITELSGGNQQKVLISKWLCCCPEVII 432
Query: 319 LDEPTSGLDSTTALRIVQMLQDIAEAGKTVV 349
DEPT G+D I ++++ +A+ GK ++
Sbjct: 433 FDEPTRGIDVGAKAEIYKVMRQLADDGKVIL 463
|
Length = 510 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 70.6 bits (173), Expect = 1e-13
Identities = 56/198 (28%), Positives = 97/198 (48%), Gaps = 28/198 (14%)
Query: 174 NGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP------YSKS- 226
++ + PGEVL ++G SGSGK+TLL L+GRL G+ TY Y S
Sbjct: 20 RDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDH--GTATYIMRSGAELELYQLSE 77
Query: 227 ------LKSKIGFVTQDDVLFPHLTVKETLTYAALL--RLPNTLTKQQKEKR--AIDVIN 276
++++ GFV Q+ P ++ ++ A + RL + R A D +
Sbjct: 78 AERRRLMRTEWGFVHQN----PRDGLRMRVSAGANIGERLMAIGARHYGNIRATAQDWLE 133
Query: 277 ELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQ 336
E+ ++ + + +F SGG ++R+ I ++ P L+F+DEPT GLD + R++
Sbjct: 134 EVEIDPTRIDDLPRAF----SGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLD 189
Query: 337 MLQD-IAEAGKTVVTTIH 353
+L+ + + G V+ H
Sbjct: 190 LLRGLVRDLGLAVIIVTH 207
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 70.7 bits (173), Expect = 1e-13
Identities = 57/196 (29%), Positives = 99/196 (50%), Gaps = 18/196 (9%)
Query: 171 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME----PTVGGSITYNDHPYSK- 225
++L+G+ + + ALMGPSGSGK+TLL + + RL+E V G + + K
Sbjct: 17 EVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFN-RLIELYPEARVSGEVYLDGQDIFKM 75
Query: 226 ---SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKE--KRAIDVINELGL 280
L+ ++ V Q P+L++ E + A L+L N L K +KE +R + + L
Sbjct: 76 DVIELRRRVQMVFQIPNPIPNLSIFENV--ALGLKL-NRLVKSKKELQERVRWALEKAQL 132
Query: 281 -ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQ 339
+ +D + + +SGG+++R+CI + P +L DEPT+ LD +I +
Sbjct: 133 WDEVKDRL--DAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFL 190
Query: 340 DIAEAGKTVVTTIHQP 355
++ + T+V H P
Sbjct: 191 ELKKD-MTIVLVTHFP 205
|
Length = 250 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 73.6 bits (181), Expect = 1e-13
Identities = 65/262 (24%), Positives = 115/262 (43%), Gaps = 33/262 (12%)
Query: 136 ERPKFQTEPTLPIY-LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGS 194
K +TE + DV+Y G S +IL+ I+ ++ ++G SGS
Sbjct: 459 INKKKRTELNNLNGDIVINDVSYSY---GYGS----NILSDISLTIKMNSKTTIVGMSGS 511
Query: 195 GKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHLTVKETL 250
GK+TL LL G + G I N +L+ I ++ Q+ +F ++ E L
Sbjct: 512 GKSTLAKLLVG-FFQAR-SGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSG-SILENL 568
Query: 251 TYAALLRLPNTLTKQQKEKRAIDV------INELGLERCQDTMIGGSFVRGVSGGERKRV 304
A Q + A ++ I + L + GS +SGG+++R+
Sbjct: 569 LLGA-----KENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGS---SISGGQKQRI 620
Query: 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFD 364
+ ++ + +L LDE TS LD+ T +IV L ++ + KT++ H+ S + + D
Sbjct: 621 ALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNLQD--KTIIFVAHRLS--VAKQSD 676
Query: 365 KLILLGKGSLLYFGKASEAMAY 386
K+I+L G ++ G E +
Sbjct: 677 KIIVLDHGKIIEQGSHDELLDR 698
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 70.1 bits (172), Expect = 1e-13
Identities = 56/197 (28%), Positives = 96/197 (48%), Gaps = 17/197 (8%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLL-------SGRLMEPTVGGSITYNDHPYS 224
+L ++ SVN GE + L GPSGSGK+TLL L G+++ G +
Sbjct: 26 VLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPR 85
Query: 225 KSL---KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE 281
+ L ++ IG+V+Q + P ++ L A L + ++ +A D++ L L
Sbjct: 86 EVLEVRRTTIGYVSQFLRVIPRVS---ALDVVAEPLLARGVPREVARAKAADLLTRLNLP 142
Query: 282 RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI 341
++ +F SGGE++RV I I++ +L LDEPT+ LD+T +V+++++
Sbjct: 143 ERLWSLAPATF----SGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREA 198
Query: 342 AEAGKTVVTTIHQPSSR 358
G +V H R
Sbjct: 199 KARGAALVGIFHDEEVR 215
|
Length = 235 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 70.5 bits (173), Expect = 1e-13
Identities = 62/227 (27%), Positives = 108/227 (47%), Gaps = 36/227 (15%)
Query: 179 SVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVG----GSITYNDHP-YSK-----SLK 228
++ P V A +GPSG GK+T+L L+ R+ E G G + + Y +++
Sbjct: 26 NIEPRSVTAFIGPSGCGKSTVLRTLN-RMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVR 84
Query: 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL------ER 282
IG V Q FP +++++ + A L+L + K+ +D + E L
Sbjct: 85 RTIGMVFQRPNPFPTMSIRDNV--VAGLKLNG-----VRNKKDLDELVEKSLRGANLWNE 137
Query: 283 CQDTM--IGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQD 340
+D + GG G+SGG+++R+CI I + P +L +DEP S LD + L I ++ +
Sbjct: 138 VKDRLDKPGG----GLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINE 193
Query: 341 IAEAGKTVVTTIH--QPSSRLFHK--FDKLILLGK-GSLLYFGKASE 382
+ + T+V H Q ++R+ + F L GK G L+ +
Sbjct: 194 LKQD-YTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVEIDDTEK 239
|
Length = 258 |
| >gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 70.2 bits (172), Expect = 1e-13
Identities = 57/183 (31%), Positives = 87/183 (47%), Gaps = 21/183 (11%)
Query: 166 SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDH---- 221
S E+K IL G+ V PGEV A+MGP+GSGK+TL L+GR GG++ +
Sbjct: 10 SVEDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLE 69
Query: 222 --PYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAID------ 273
P ++ + I Q V P ++ + L A + + + +D
Sbjct: 70 LSPEDRAGEG-IFMAFQYPVEIPGVSNQFFLQTAL------NAVRSYRGQEPLDRFDFQD 122
Query: 274 -VINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTAL 332
+ ++ L + + ++ S G SGGE+KR I ++ P L LDE SGLD AL
Sbjct: 123 LMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLD-IDAL 181
Query: 333 RIV 335
+IV
Sbjct: 182 KIV 184
|
Length = 248 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 70.4 bits (172), Expect = 1e-13
Identities = 53/214 (24%), Positives = 99/214 (46%), Gaps = 15/214 (7%)
Query: 168 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLL-------NLLSGRLMEPTV--GGSITY 218
++ IL + + V AL+GPSG GK+T + +L+ G E + G Y
Sbjct: 14 DDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIY 73
Query: 219 NDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINEL 278
+ L+ K+G V Q FP ++ + + Y LR+ + E+R + +
Sbjct: 74 DPAVDVVELRKKVGMVFQKPNPFPK-SIFDNVAYG--LRIHGEDDEDFIEERVEESLKAA 130
Query: 279 GL-ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQM 337
L + +D + + G+SGG+++R+CI I ++P ++ +DEP S LD + +I +
Sbjct: 131 ALWDEVKDKLDKSAL--GLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDL 188
Query: 338 LQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK 371
+ + E V+ T + + K+ L G+
Sbjct: 189 IHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGE 222
|
Length = 250 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 70.1 bits (172), Expect = 1e-13
Identities = 45/179 (25%), Positives = 76/179 (42%), Gaps = 27/179 (15%)
Query: 178 GSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQD 237
GS++ EV+ ++GP+G GKTT + +L+G L +P G D + + Q
Sbjct: 20 GSISESEVIGILGPNGIGKTTFIKMLAGVL-KPDEGDIEIELD---------TVSYKPQ- 68
Query: 238 DVLFPHLTVKETLTYAALLR--LPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRG 295
++ T LL + T + ++ L +E+ D V
Sbjct: 69 -----YIKADYEGTVRDLLSSITKDFYTHPYFK---TEIAKPLQIEQILD-----REVPE 115
Query: 296 VSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIH 353
+SGGE +RV I + + + LDEP++ LD L ++++ AE KT H
Sbjct: 116 LSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEH 174
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 70.8 bits (174), Expect = 2e-13
Identities = 64/225 (28%), Positives = 114/225 (50%), Gaps = 22/225 (9%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---- 224
E+ L + S+ G +A++G +GSGK+TLL L+G L++PT G++T + +
Sbjct: 19 ERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNG-LLQPT-SGTVTIGERVITAGKK 76
Query: 225 ----KSLKSKIGFVTQDDVLFP-HLTVKETLTYAALLRLPN-TLTKQQKEKRAIDVINEL 278
K L+ K+G V Q FP H +ET+ N ++++ +++A ++I +
Sbjct: 77 NKKLKPLRKKVGIVFQ----FPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELV 132
Query: 279 GLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQML 338
GL ++ + F +SGG+ +RV I + + P +L LDEPT+GLD +++M
Sbjct: 133 GLP--EELLARSPF--ELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMF 188
Query: 339 QDI-AEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382
+ E G T V H D+++++ KG++ G E
Sbjct: 189 YKLHKEKGLTTVLVTHSMED-AARYADQIVVMHKGTVFLQGTPRE 232
|
Length = 290 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 69.7 bits (171), Expect = 2e-13
Identities = 55/191 (28%), Positives = 95/191 (49%), Gaps = 24/191 (12%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVG-----GSITYNDHPYSKSL 227
LN ++ SV+PGE+ L+GP+G+GKTTL+++++G+ P G G P +
Sbjct: 21 LNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGK-TRPQEGEVLFDGDTDLTKLPEHRIA 79
Query: 228 KSKIGFVTQDDVLFPHLTVKETLTYA--------ALLRLPNTLTKQQKEKRAIDVINEL- 278
++ IG Q +F +LTV+E L A A L + +E+R ID +
Sbjct: 80 RAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLF----ARLRAEERRRIDELLATI 135
Query: 279 GLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQML 338
GL +D + +S G+++ + IG + +P LL LDEP +G+ + ++L
Sbjct: 136 GLGDERDRLAA-----LLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELL 190
Query: 339 QDIAEAGKTVV 349
+ +A +V
Sbjct: 191 KSLAGKHSILV 201
|
Length = 249 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 70.2 bits (172), Expect = 3e-13
Identities = 60/223 (26%), Positives = 104/223 (46%), Gaps = 32/223 (14%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLL---NLLSGRLMEPTVGGSIT------YNDHPY 223
L+ ++ + +V A++GPSG GK+T L N ++ + V G +T Y+
Sbjct: 55 LDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVD 114
Query: 224 SKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC 283
+L+ +IG V Q FP ++ + + Y L++ Q ID E L R
Sbjct: 115 PVALRRRIGMVFQKPNPFPK-SIYDNVAYG--LKI-------QGYDGDIDERVEESLRRA 164
Query: 284 ------QDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQM 337
+D + +SGG+++R+CI I +P ++ +DEP S LD +I +
Sbjct: 165 ALWDEVKDQLDSSGL--DLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDL 222
Query: 338 LQDIAEAGKTVVTTIH--QPSSRLFHKFDKLILLGKGSLLYFG 378
++++AE TVV H Q ++R+ K + L G L+ F
Sbjct: 223 IEELAEE-YTVVIVTHNMQQAARISDK--TAVFLTGGELVEFD 262
|
Length = 285 |
| >gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 69.2 bits (170), Expect = 4e-13
Identities = 49/171 (28%), Positives = 81/171 (47%), Gaps = 24/171 (14%)
Query: 174 NGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP---YSKSLKSK 230
N + V E+++L+GP+G+GKTT+ N L+G +PT GG+I ++
Sbjct: 22 NNVNLEVREQEIVSLIGPNGAGKTTVFNCLTG-FYKPT-GGTILLRGQHIEGLPGHQIAR 79
Query: 231 IGFVT--QDDVLFPHLTVKETLTYA-------ALLR-LPNTLTKQQKEKRAIDV----IN 276
+G V Q LF +TV E L A L L T ++ E A+D +
Sbjct: 80 MGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLE 139
Query: 277 ELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLD 327
+GL + G ++ G+++R+ I ++ P +L LDEP +GL+
Sbjct: 140 RVGLLEHANRQAG-----NLAYGQQRRLEIARCMVTQPEILMLDEPAAGLN 185
|
Length = 255 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 69.1 bits (169), Expect = 4e-13
Identities = 59/226 (26%), Positives = 102/226 (45%), Gaps = 34/226 (15%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKI- 231
L ++G V GE+L L+GP+G+GK+TLL ++G + GSI + P +++
Sbjct: 15 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT---SGSGSIQFAGQPLEAWSATELA 71
Query: 232 ---GFVTQDDVLFPHLTVKETLTYAALLRLP--NTLTKQQKEKRAIDVINEL-GLERCQD 285
+++Q +P + LT Q +K +++N++ G D
Sbjct: 72 RHRAYLSQQQ--------------TPPFAMPVWHYLTLHQPDKTRTELLNDVAGALALDD 117
Query: 286 TMIGGSFVRGVSGGERKRV-----CIGNEIIINPS--LLFLDEPTSGLDSTTALRIVQML 338
+ G +SGGE +RV + NP+ LL LDEP + LD + ++L
Sbjct: 118 KL--GRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLL 175
Query: 339 QDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384
+ + G +V + H + L H + LL +G LL G+ E +
Sbjct: 176 SALCQQGLAIVMSSHDLNHTLRHA-HRAWLLKRGKLLASGRREEVL 220
|
Length = 248 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 69.9 bits (171), Expect = 5e-13
Identities = 68/262 (25%), Positives = 121/262 (46%), Gaps = 28/262 (10%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSI------TYNDHPYSKS 226
LN ++ V G++ ++G SG+GK+TL+ ++ L PT G I T +
Sbjct: 21 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVN-LLERPTSGSVIVDGQDLTTLSNSELTK 79
Query: 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDT 286
+ +IG + Q L TV + A L L NT K + +++ +++ +GL D
Sbjct: 80 ARRQIGMIFQHFNLLSSRTVFGNV--ALPLELDNT-PKDEIKRKVTELLALVGLGDKHD- 135
Query: 287 MIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGK 346
S+ +SGG+++RV I + NP +L DE TS LD T I+++L++I
Sbjct: 136 ----SYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLG 191
Query: 347 TVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIGCSPQIAMNPAEFLLD 406
+ I + D + ++ G L+ G SE ++ P+ + +F+
Sbjct: 192 LTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFSH-------PKTPL-AQKFI-- 241
Query: 407 LANGNLHDVSVPSELQDRVQTE 428
LH +S+P + Q+R+Q
Sbjct: 242 --RSTLH-LSIPEDYQERLQAT 260
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 69.5 bits (170), Expect = 5e-13
Identities = 54/201 (26%), Positives = 94/201 (46%), Gaps = 27/201 (13%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLL---NLLSGRLMEPTVGGSIT------YNDHPY 223
L G++ + V AL+GPSG GK+T L N ++ R+ + GS+ Y D
Sbjct: 61 LKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120
Query: 224 SKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLR-------LPNTLTKQQKEKRAIDVIN 276
L+ ++G V Q FP +++E ++Y L L + K+ D +
Sbjct: 121 LVELRKRVGMVFQSPNPFPK-SIRENISYGPRKHGDINTGLLARLLGRDDKDAE--DELV 177
Query: 277 ELGLERC------QDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTT 330
E L + D + G+SGG+++R+CI + ++P ++ +DEP S LD
Sbjct: 178 ERSLRQAALWDEVNDRL--DDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIA 235
Query: 331 ALRIVQMLQDIAEAGKTVVTT 351
+I +++++AE VV T
Sbjct: 236 TSKIEDLIEELAEEYTVVVVT 256
|
Length = 305 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 69.0 bits (169), Expect = 5e-13
Identities = 63/216 (29%), Positives = 103/216 (47%), Gaps = 28/216 (12%)
Query: 182 PGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPY----SKSLKSKIGFVTQD 237
G+V L+G +GSGK+TLL +L GR P+ G I + P SK+ K+ ++ Q
Sbjct: 36 AGKVTGLIGHNGSGKSTLLKML-GRHQPPS-EGEILLDAQPLESWSSKAFARKVAYLPQQ 93
Query: 238 DVLFPHLTVKETLT------YAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGS 291
+TV+E + + AL R ++K + AI ++ GL +
Sbjct: 94 LPAAEGMTVRELVAIGRYPWHGALGRF--GAADREKVEEAISLV---GL-----KPLAHR 143
Query: 292 FVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA-EAGKTVVT 350
V +SGGER+R I + + L LDEPTS LD + ++ ++ ++ E G TV+
Sbjct: 144 LVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIA 203
Query: 351 TIH--QPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384
+H ++R D L+ L G ++ G +E M
Sbjct: 204 VLHDINMAARY---CDYLVALRGGEMIAQGTPAELM 236
|
Length = 265 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 71.4 bits (175), Expect = 5e-13
Identities = 58/190 (30%), Positives = 92/190 (48%), Gaps = 29/190 (15%)
Query: 172 ILNGITGSVN----------PGEVLALMGPSGSGK-TTLLNLLSGRLMEPTVGGSITYND 220
+LN +T V+ PGE L+L+G SGSGK TT LL RL+E + GG I +N
Sbjct: 329 LLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALL--RLVE-SQGGEIIFNG 385
Query: 221 H-----PYSK--SLKSKIGFVTQDDVLFPHLTVKETLTYAAL--LRLPNTLTKQQKEKRA 271
K +L+ I F+ QD + L ++T+ + + LR+ L + R
Sbjct: 386 QRIDTLSPGKLQALRRDIQFIFQDP--YASLDPRQTVGDSIMEPLRVHGLLPGKAAAARV 443
Query: 272 IDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTA 331
++ +GL F SGG+R+R+CI + +NP ++ DE S LD +
Sbjct: 444 AWLLERVGLLPEHAWRYPHEF----SGGQRQRICIARALALNPKVIIADEAVSALDVSIR 499
Query: 332 LRIVQMLQDI 341
+I+ +L D+
Sbjct: 500 GQIINLLLDL 509
|
Length = 623 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 67.9 bits (167), Expect = 6e-13
Identities = 55/220 (25%), Positives = 101/220 (45%), Gaps = 21/220 (9%)
Query: 160 ILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYN 219
IL E L ++ V GE + L+G +G+GK+TLL LL+G + P G++T
Sbjct: 25 ILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAG-IYPPD-SGTVTVR 82
Query: 220 DHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG 279
+ S +G + P LT +E + L L++++ +++ ++I
Sbjct: 83 -----GRVSSLLGLGGGFN---PELTGRENIYLNGRL---LGLSRKEIDEKIDEIIEFSE 131
Query: 280 LERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQ 339
L D V+ S G + R+ + P +L +DE + D+ + + L+
Sbjct: 132 LGDFIDLP-----VKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLR 186
Query: 340 DIAEAGKTVVTTIHQPSSRLFHKF-DKLILLGKGSLLYFG 378
++ + GKTV+ H PSS + D+ ++L KG + + G
Sbjct: 187 ELLKQGKTVILVSHDPSS--IKRLCDRALVLEKGKIRFDG 224
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 68.2 bits (167), Expect = 1e-12
Identities = 52/181 (28%), Positives = 86/181 (47%), Gaps = 27/181 (14%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLL---NLLSGRLMEPTVGGSITYNDHPYSK 225
+K+ + GI ++ AL+GPSGSGK+T L N ++ + V G I Y ++
Sbjct: 32 KKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINR 91
Query: 226 S------LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG 279
++ IG V Q F ++ E +T+A K+K+ +D I E
Sbjct: 92 KEINVYEMRKHIGMVFQRPNPFAK-SIYENITFALERA-------GVKDKKVLDEIVETS 143
Query: 280 L------ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLD--STTA 331
L ++ +D + + +SGG+++R+CI I + P +L +DEP S LD ST
Sbjct: 144 LKQAALWDQVKDDLHKSALT--LSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQ 201
Query: 332 L 332
L
Sbjct: 202 L 202
|
Length = 267 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 67.9 bits (166), Expect = 1e-12
Identities = 57/234 (24%), Positives = 99/234 (42%), Gaps = 27/234 (11%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP------TVGGSITYNDHPYSK 225
IL ++ + PG V AL+G +G+GK+TLL L+G L V G +T N P +
Sbjct: 16 ILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAA 75
Query: 226 SLKSKIG-----FVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL 280
++ F + +E + L R P+ R ++ + L
Sbjct: 76 IDAPRLARLRAVLPQAAQPAFA-FSAREIVL---LGRYPHARRAGALTHRDGEIAWQ-AL 130
Query: 281 ERCQDTMIGGSFVRGVSGGERKRVCIG---------NEIIINPSLLFLDEPTSGLDSTTA 331
T + G V +SGGE RV ++ P L LDEPT+ LD
Sbjct: 131 ALAGATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQ 190
Query: 332 LRIVQMLQDIA-EAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384
R++ ++ +A + V+ +H P+ H D++ +L G+++ G ++ +
Sbjct: 191 HRLLDTVRRLARDWNLGVLAIVHDPNLAARHA-DRIAMLADGAIVAHGAPADVL 243
|
Length = 272 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.6 bits (165), Expect = 1e-12
Identities = 58/216 (26%), Positives = 101/216 (46%), Gaps = 25/216 (11%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSG--RLMEPTVGGSITYNDHPYSKSLKSK 230
L + +V G + AL+G +GSGK+TL L G RL G I+ P ++L+
Sbjct: 23 LRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLAS----GKISILGQPTRQALQKN 78
Query: 231 -IGFVTQD---DVLFPHLTVKETLT----YAALLRLPNTLTKQQKEKRAIDVINELGLER 282
+ +V Q D FP L + + LR K++ + + + +
Sbjct: 79 LVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRA----KKRDRQIVTAALARVDMVE 134
Query: 283 CQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA 342
+ IG +SGG++KRV + I ++ LDEP +G+D T RI+ +L+++
Sbjct: 135 FRHRQIGE-----LSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELR 189
Query: 343 EAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378
+ GKT++ + H S +F ++ KG++L G
Sbjct: 190 DEGKTMLVSTHNLGS--VTEFCDYTVMVKGTVLASG 223
|
Length = 272 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.7 bits (165), Expect = 1e-12
Identities = 54/229 (23%), Positives = 102/229 (44%), Gaps = 28/229 (12%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTL---LNLLSGRLMEPTVGGSITYNDHP-YS 224
EK L ++ + V AL+GPSG GK+T LN ++ + + G ++ Y
Sbjct: 24 EKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYE 83
Query: 225 K-----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG 279
L+ +G V Q FP +++ + + Y + N K+ +D + E
Sbjct: 84 PDVDVVELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIHGAN--------KKDLDGVVENA 134
Query: 280 L------ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALR 333
L + D + S +SGG+++R+CI + + P ++ DEPTS LD + R
Sbjct: 135 LRSAALWDETSDRL--KSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTAR 192
Query: 334 IVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382
I ++ ++ + V+ T + + + L+G+ L+ FG+ +
Sbjct: 193 IEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGE--LIEFGQTRQ 239
|
Length = 258 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.4 bits (164), Expect = 2e-12
Identities = 52/194 (26%), Positives = 98/194 (50%), Gaps = 25/194 (12%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLL-------NLLSGRLMEPTV--GGSITYNDHPY 223
LN I + + AL+GPSG GK+T L +L+ G +E V G Y+++
Sbjct: 23 LNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFD 82
Query: 224 SKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER- 282
L+ KIG V Q F +++ + ++Y + K+K+ +D I E L++
Sbjct: 83 ILELRRKIGMVFQTPNPF-LMSIYDNISYGPKIH-------GTKDKKKLDEIVEQSLKKS 134
Query: 283 -----CQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQM 337
+D + + +SGG+++R+CI + I P+++ +DEPTS LD + +I ++
Sbjct: 135 ALWNEVKDKLNTNAL--SLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEEL 192
Query: 338 LQDIAEAGKTVVTT 351
+ ++ E+ ++ T
Sbjct: 193 IINLKESYTIIIVT 206
|
Length = 254 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 66.4 bits (163), Expect = 2e-12
Identities = 52/191 (27%), Positives = 98/191 (51%), Gaps = 18/191 (9%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKI- 231
LN ++ V+PGE+ ++GP+G+GKTT++++++G+ P GS+ + + + +I
Sbjct: 18 LNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGK-TRPDE-GSVLFGGTDLTGLPEHQIA 75
Query: 232 ----GFVTQDDVLFPHLTVKETL--TYAALLRLPNTLTKQ--QKEKRAID-VINELGLER 282
G Q +F +LTV E L + +L + +EK I+ V+ +GL
Sbjct: 76 RAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLAD 135
Query: 283 CQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA 342
D + G +S G+++ + IG ++ +P LL LDEP +G+ + ++L+ +A
Sbjct: 136 EADRLAG-----LLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLA 190
Query: 343 EAGKTVVTTIH 353
+VV H
Sbjct: 191 G-KHSVVVVEH 200
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 66.7 bits (163), Expect = 3e-12
Identities = 60/242 (24%), Positives = 115/242 (47%), Gaps = 30/242 (12%)
Query: 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME 209
+ F +V+++ S+ L ++ ++ G+ +++G +GSGK+T+ L+ G +E
Sbjct: 8 IVFKNVSFQY------QSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIG--IE 59
Query: 210 PTVGGSITYNDHPYS----KSLKSKIGFVTQD-DVLFPHLTVKETLTYAALLRLPNTLTK 264
G I YN+ + + L+ IG V Q+ D F VK Y L N
Sbjct: 60 KVKSGEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVK----YDVAFGLENHAVP 115
Query: 265 QQKEKRAI-DVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPT 323
+ R + + + ++ + D +SGG+++RV I + +NPS++ LDE T
Sbjct: 116 YDEMHRRVSEALKQVDMLERAD-----YEPNALSGGQKQRVAIAGVLALNPSVIILDEAT 170
Query: 324 SGLD---STTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 380
S LD L +V+ ++ +E T+++ H S + + D +I++ KG++ G
Sbjct: 171 SMLDPDARQNLLDLVRKVK--SEHNITIISITHDLSEAM--EADHVIVMNKGTVYKEGTP 226
Query: 381 SE 382
+E
Sbjct: 227 TE 228
|
Length = 269 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.6 bits (162), Expect = 3e-12
Identities = 44/177 (24%), Positives = 92/177 (51%), Gaps = 14/177 (7%)
Query: 185 VLALMGPSGSGKTTLL---NLLSGRLMEPTVGGSITYNDHP-YSK-----SLKSKIGFVT 235
V A++GPSG GK+T+L N + + V G I +D Y + S++ ++G V
Sbjct: 32 VTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVF 91
Query: 236 QDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL-ERCQDTMIGGSFVR 294
Q FP +++ + + A +L + + + ++ + + L + +D + +
Sbjct: 92 QKPNPFPAMSIYDNVI--AGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAME- 148
Query: 295 GVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTT 351
+SGG+++R+CI I + P ++ +DEP S LD + L+I ++++++ E ++ T
Sbjct: 149 -LSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVT 204
|
Length = 252 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 66.6 bits (162), Expect = 3e-12
Identities = 57/225 (25%), Positives = 106/225 (47%), Gaps = 18/225 (8%)
Query: 168 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP--YSK 225
+++ +L G+ + V L+G +G GK+TL LSG L+ P G++ + P YSK
Sbjct: 12 QDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSG-LLRPQ-KGAVLWQGKPLDYSK 69
Query: 226 ----SLKSKIGFVTQD-DVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL 280
+L+ ++ V QD + + + + ++ L N + + R +D L L
Sbjct: 70 RGLLALRQQVATVFQDPEQQIFYTDIDSDIAFS----LRNLGVPEAEITRRVD--EALTL 123
Query: 281 ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQD 340
Q ++ +S G++KRV I +++ L LDEPT+GLD +++ +++
Sbjct: 124 VDAQH--FRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRR 181
Query: 341 IAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385
I G V+ + H ++ D + +L +G +L G E A
Sbjct: 182 IVAQGNHVIISSHD-IDLIYEISDAVYVLRQGQILTHGAPGEVFA 225
|
Length = 271 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.5 bits (162), Expect = 3e-12
Identities = 52/191 (27%), Positives = 95/191 (49%), Gaps = 13/191 (6%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPY---SK 225
+ + +T + G A++GP+G GK+TLL LS RLM P G +H SK
Sbjct: 19 KYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLS-RLMTPAHGHVWLDGEHIQHYASK 77
Query: 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNT--LTKQQKEKRAIDVINELGLERC 283
+ +IG + Q+ +TV+E + R P+ T+ +KE + + + ++
Sbjct: 78 EVARRIGLLAQNATTPGDITVQELVARG---RYPHQPLFTRWRKEDE--EAVTK-AMQAT 131
Query: 284 QDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI-A 342
T + V +SGG+R+R I + +++ LDEPT+ LD + + ++++L ++
Sbjct: 132 GITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNR 191
Query: 343 EAGKTVVTTIH 353
E G T+ +H
Sbjct: 192 EKGYTLAAVLH 202
|
Length = 265 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.4 bits (162), Expect = 3e-12
Identities = 60/234 (25%), Positives = 103/234 (44%), Gaps = 34/234 (14%)
Query: 168 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLL---NLLSGRLMEPTVGGSITYND-HPY 223
K IL I + EV A +GPSG GK+T L N ++ + V G + + Y
Sbjct: 16 GSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVY 75
Query: 224 SKS-----LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINE- 277
S L++K+G V Q FP ++ + + Y L K K+ +D I E
Sbjct: 76 SVDTNVVLLRAKVGMVFQKPNPFPK-SIYDNVAYGP------KLHGLAKNKKKLDEIVEK 128
Query: 278 ----LGL-----ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDS 328
+GL +R +D+ +SGG+++R+CI I + P++L +DEP S LD
Sbjct: 129 SLTSVGLWEELGDRLKDSAFE------LSGGQQQRLCIARAIAVKPTMLLMDEPCSALDP 182
Query: 329 TTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382
I ++Q++ + +V T ++ D++ G ++ + E
Sbjct: 183 VATNVIENLIQELKKNFTIIVVTHSMKQAKKVS--DRVAFFQSGRIVEYNTTQE 234
|
Length = 251 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.2 bits (161), Expect = 4e-12
Identities = 56/225 (24%), Positives = 111/225 (49%), Gaps = 25/225 (11%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLL-------NLLSGRLMEPTVGGSITYNDHPYS 224
+L I ++ A++GPSG GK+TLL +++SG +E G + N++ YS
Sbjct: 19 VLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLE---GAVLLDNENIYS 75
Query: 225 KSL-----KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG 279
+L + ++G V Q FP ++ + + + R+ T + + ++ + +
Sbjct: 76 PNLDVVNLRKRVGMVFQQPNPFPK-SIFDNVAFGP--RMLGTTAQSRLDEVVEKSLRQAA 132
Query: 280 L-ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQML 338
L + +D + +SGG+++R+CI + I P ++ +DEP S LD + +RI +++
Sbjct: 133 LWDEVKDNLHKSGL--ALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELM 190
Query: 339 QDIAEAGK-TVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382
Q++ + +VT Q ++R D L G L+ +G+ E
Sbjct: 191 QELKQNYTIAIVTHNMQQAAR---ASDWTGFLLTGDLVEYGRTGE 232
|
Length = 251 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 66.7 bits (163), Expect = 4e-12
Identities = 53/194 (27%), Positives = 101/194 (52%), Gaps = 16/194 (8%)
Query: 166 SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK 225
+EK LN ++ V GE L+++G +GSGK+T + L+ G L+E G I D +
Sbjct: 16 EDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDG-LLEAESGQIIIDGDLLTEE 74
Query: 226 S---LKSKIGFVTQD-DVLFPHLTVKETLTYAALLRLPNT-LTKQQKEKRAIDVINELGL 280
+ ++ KIG V Q+ D F TV++ + + L N + ++ ++R + + +G+
Sbjct: 75 NVWDIRHKIGMVFQNPDNQFVGATVEDDVAFG----LENKGIPHEEMKERVNEALELVGM 130
Query: 281 ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQD 340
+ ++ +SGG+++RV I + + P ++ LDE TS LD L +++ ++
Sbjct: 131 QDFKEREPAR-----LSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKG 185
Query: 341 IAEA-GKTVVTTIH 353
I + TV++ H
Sbjct: 186 IRDDYQMTVISITH 199
|
Length = 279 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 66.5 bits (162), Expect = 4e-12
Identities = 68/256 (26%), Positives = 121/256 (47%), Gaps = 26/256 (10%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVG----GSITYNDHPYSKSLK 228
L I + GE + ++G +GSGK+TL L+G L+ P G I D + ++
Sbjct: 18 LENINLVIKKGEYIGIIGKNGSGKSTLALHLNG-LLRPQKGKVLVSGIDTGDFSKLQGIR 76
Query: 229 SKIGFVTQD-DVLFPHLTVKETLTYAAL-LRLPNTLTKQQKEKRAIDVINELGLERCQDT 286
+G V Q+ + F TV+E L + L LP + KR + E+GLE+ +
Sbjct: 77 KLVGIVFQNPETQFVGRTVEEDLAFGPENLCLPPI----EIRKRVDRALAEIGLEKYRHR 132
Query: 287 MIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGK 346
+ +SGG+ + V + + + P L DE TS LD + + +++ ++ + E GK
Sbjct: 133 S-----PKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGK 187
Query: 347 TVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFS--SIGCSPQIAMNPAEFL 404
T+V H H D++I++ +G ++ G+ ++ S ++G +P + AE L
Sbjct: 188 TIVYITHNLEE--LHDADRIIVMDRGKIVLEGEPENVLSDVSLQTLGLTPPSLIELAENL 245
Query: 405 LDLANGNLHDVSVPSE 420
+H V +P E
Sbjct: 246 ------KMHGVVIPWE 255
|
Length = 274 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.3 bits (161), Expect = 5e-12
Identities = 55/196 (28%), Positives = 95/196 (48%), Gaps = 24/196 (12%)
Query: 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLL------------SGRLMEPTVGGSIT 217
K +L+ ++ V +LMGP+GSGKTT L L SG ++ +GG
Sbjct: 34 KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVL---LGGRSI 90
Query: 218 YNDHPYSKSL--KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVI 275
+N Y L + ++G + Q FP + L A +R + +++ A +
Sbjct: 91 FN---YRDVLEFRRRVGMLFQRPNPFPMSIMDNVL---AGVRAHKLVPRKEFRGVAQARL 144
Query: 276 NELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIV 335
E+GL + S R +SGG+++ +C+ + +NP +L LDEPTS LD TT +I
Sbjct: 145 TEVGLWDAVKDRLSDSPFR-LSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIE 203
Query: 336 QMLQDIAEAGKTVVTT 351
+ ++ +A+ ++ T
Sbjct: 204 EFIRSLADRLTVIIVT 219
|
Length = 276 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 66.2 bits (162), Expect = 6e-12
Identities = 63/223 (28%), Positives = 113/223 (50%), Gaps = 32/223 (14%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS----LK 228
L ++ SV GE +A++G +GSGK+TL LL+G L+ P G+IT S+ ++
Sbjct: 23 LKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNG-LLLPE-AGTITVGGMVLSEETVWDVR 80
Query: 229 SKIGFVTQD-DVLFPHLTVKETLTYAALLRLPNT-LTKQQKEKRAIDVINELGLERCQDT 286
++G V Q+ D F TV++ + + L N + +++ +R + ++G+E
Sbjct: 81 RQVGMVFQNPDNQFVGATVQDDVAFG----LENIGVPREEMVERVDQALRQVGME----- 131
Query: 287 MIGGSFVR----GVSGGERKRVCIGNEIIINPSLLFLDEPTSGLD---STTALRIVQMLQ 339
F+ +SGG+++RV I + + P ++ LDE TS LD L V+ L+
Sbjct: 132 ----DFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLK 187
Query: 340 DIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382
+ + G TV++ H + D++I++ KG +L G E
Sbjct: 188 E--QKGITVLSITHDLDEAA--QADRVIVMNKGEILEEGTPEE 226
|
Length = 279 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 66.0 bits (161), Expect = 6e-12
Identities = 52/213 (24%), Positives = 112/213 (52%), Gaps = 14/213 (6%)
Query: 179 SVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---KSLKS-KIGFV 234
++ G+ LA++G +GSGK+TL +L+G ++EPT G + +DHP S +S +I +
Sbjct: 35 TLREGQTLAIIGENGSGKSTLAKMLAG-MIEPT-SGELLIDDHPLHFGDYSYRSQRIRMI 92
Query: 235 TQD--DVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSF 292
QD L P + + L + LRL L +Q+EK+ I+ + ++GL +
Sbjct: 93 FQDPSTSLNPRQRISQILDFP--LRLNTDLEPEQREKQIIETLRQVGLLPDH----ASYY 146
Query: 293 VRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTI 352
++ G+++R+ + +I+ P ++ DE + LD + +++ ++ ++ E +
Sbjct: 147 PHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYV 206
Query: 353 HQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385
Q + H D+++++ +G ++ G ++ +A
Sbjct: 207 TQHLGMMKHISDQVLVMHQGEVVERGSTADVLA 239
|
Length = 267 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 65.5 bits (160), Expect = 7e-12
Identities = 53/200 (26%), Positives = 93/200 (46%), Gaps = 28/200 (14%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPT-----VGGSITYNDHP- 222
EK L + + V A +GPSG GK+T L L+ M T V G IT +
Sbjct: 31 EKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLN--RMNDTIDGCRVTGKITLDGEDI 88
Query: 223 YSKS-----LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINE 277
Y L++++G V Q FP ++ E + Y + + L + + E +D I E
Sbjct: 89 YDPRLDVVELRARVGMVFQKPNPFPK-SIYENVAYGPRI---HGLARSKAE---LDEIVE 141
Query: 278 LGLERC------QDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTA 331
L + +D + G+SGG+++R+CI I ++P ++ +DEP S LD
Sbjct: 142 TSLRKAGLWEEVKDRL--HEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIAT 199
Query: 332 LRIVQMLQDIAEAGKTVVTT 351
++ +++ ++ + V+ T
Sbjct: 200 AKVEELIDELRQNYTIVIVT 219
|
Length = 267 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 65.5 bits (160), Expect = 9e-12
Identities = 50/190 (26%), Positives = 89/190 (46%), Gaps = 18/190 (9%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVG----GSITYNDHPYSKSLK 228
L + ++ G A +G +GSGK+T++ LL+G L PT G +K +K
Sbjct: 23 LFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNG-LHVPTQGSVRVDDTLITSTSKNKDIK 81
Query: 229 S---KIGFVTQDDVLFPHLTVKETLTYAALLRLPNT--LTKQQKEKRAIDVINELGLERC 283
K+G V Q FP + E + P +++++ E A + + +G+
Sbjct: 82 QIRKKVGLVFQ----FPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGIS-- 135
Query: 284 QDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE 343
+ F +SGG+ +RV I + + P +L LDEPT+GLD ++ + + + +
Sbjct: 136 ESLFEKNPF--ELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQ 193
Query: 344 AGKTVVTTIH 353
+G T+V H
Sbjct: 194 SGMTIVLVTH 203
|
Length = 280 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 64.7 bits (158), Expect = 9e-12
Identities = 48/177 (27%), Positives = 85/177 (48%), Gaps = 15/177 (8%)
Query: 175 GITGSVNPGEVLALMGPSGSGKTT----LLNLLSGRLMEPTVGGSITYNDHPYSK-SLKS 229
+ S+ GEVLAL+G SGSGK+ +L LL L + G I + P S++
Sbjct: 4 DLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQ--TSGEILLDGRPLLPLSIRG 61
Query: 230 K-IGFVTQD--DVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDT 286
+ I + Q+ P T+ LR L+KQ + ++ + +GL ++
Sbjct: 62 RHIATIMQNPRTAFNPLFTMGNHAIET--LRSLGKLSKQAR-ALILEALEAVGLPDPEEV 118
Query: 287 MIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE 343
+ + +SGG +RV I +++ P L DEPT+ LD R++++L+++ +
Sbjct: 119 L--KKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQ 173
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 65.2 bits (159), Expect = 9e-12
Identities = 51/209 (24%), Positives = 96/209 (45%), Gaps = 42/209 (20%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLL---NLLSGRLMEPTVGGSITYNDHP-YSK--- 225
+ + + ++ A +GPSG GK+T+L N L+ + V G +T++ Y+
Sbjct: 26 VKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVD 85
Query: 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKE------KRAI----- 272
++ +IG V Q FP ++ + + Y A + N E ++A
Sbjct: 86 PVEVRRRIGMVFQKPNPFPK-SIYDNIAYGARI---NGYKGDMDELVERSLRQAALWDEV 141
Query: 273 -DVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTA 331
D + + GL +SGG+++R+CI I + P ++ +DEP S LD +
Sbjct: 142 KDKLKQSGL--------------SLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPIST 187
Query: 332 LRIVQMLQDIAEAGKTVVTTIH--QPSSR 358
LRI +++ ++ E T++ H Q ++R
Sbjct: 188 LRIEELMHELKEQ-YTIIIVTHNMQQAAR 215
|
Length = 264 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 66.7 bits (163), Expect = 1e-11
Identities = 51/189 (26%), Positives = 99/189 (52%), Gaps = 21/189 (11%)
Query: 168 EEKDILNGITGSVNPGEVLALMGPSGSGKT-TLLNLLSGRLM-EPTV----------GGS 215
+ ++N ++ + GE LAL+G SGSGK+ T L++L RL+ P V G S
Sbjct: 20 TVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSIL--RLLPSPPVVYPSGDIRFHGES 77
Query: 216 ITYNDHPYSKSLK-SKIGFVTQDDV--LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAI 272
+ + + ++ +KI + Q+ + L P T+++ L +L L + ++ +
Sbjct: 78 LLHASEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQL--YEVLSLHRGMRREAARGEIL 135
Query: 273 DVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTAL 332
+ ++ +G+ + + + +SGGER+RV I ++ P LL DEPT+ LD +
Sbjct: 136 NCLDRVGIRQAAKRL--TDYPHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQA 193
Query: 333 RIVQMLQDI 341
+I+Q+L+++
Sbjct: 194 QILQLLREL 202
|
Length = 529 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 65.0 bits (158), Expect = 1e-11
Identities = 51/198 (25%), Positives = 98/198 (49%), Gaps = 16/198 (8%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLS--GRLMEPT-VGGSI------TYNDHPY 223
+ GI+ + +V A++GPSG GK+T + L+ L P V G + Y+
Sbjct: 23 IEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRIN 82
Query: 224 SKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL-ER 282
L+ +IG V Q FP +++ E + Y +R+ L + ++ + L +
Sbjct: 83 INRLRRQIGMVFQRPNPFP-MSIYENVAYG--VRISAKLPQADLDEIVESALKGAALWQE 139
Query: 283 CQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI- 341
+D + + G+SGG+++R+CI + I P +L +DEP S LD +++ +++ +
Sbjct: 140 VKDKLNKSAL--GLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLR 197
Query: 342 AEAGKTVVTTIHQPSSRL 359
+E +VT Q ++R+
Sbjct: 198 SELTIAIVTHNMQQATRV 215
|
Length = 259 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.9 bits (164), Expect = 1e-11
Identities = 52/179 (29%), Positives = 89/179 (49%), Gaps = 21/179 (11%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS-----KSL 227
L+ I+ G+V ALMG +G+GK+TLL +LSG +P GSI + +L
Sbjct: 20 LDDISFDCRAGQVHALMGENGAGKSTLLKILSG-NYQPD-AGSILIDGQEMRFASTTAAL 77
Query: 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNT---LTKQQKEKRAIDVINELGLERCQ 284
+ + + Q+ L P +TV E L L +LP+ + ++ A + + LG++
Sbjct: 78 AAGVAIIYQELHLVPEMTVAENLY---LGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDP 134
Query: 285 DTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDS--TTAL-RIVQMLQD 340
DT ++ +S G+R+ V I + N ++ DEPTS L + L R+++ L+
Sbjct: 135 DTP-----LKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRA 188
|
Length = 501 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 67.0 bits (163), Expect = 2e-11
Identities = 57/179 (31%), Positives = 84/179 (46%), Gaps = 17/179 (9%)
Query: 180 VNPGEVLALMGPSGSGKTTLLNLLSGRLM----EPTVGG-SITYNDHPYSKSLKSKIGFV 234
V PGE L+G +G+GKTT +L+G + TV G SI N +++ G+
Sbjct: 1962 VRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNM----GYC 2017
Query: 235 TQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVR 294
Q D + LT +E L A LR + ++ EK A I LGL D + G
Sbjct: 2018 PQFDAIDDLLTGREHLYLYARLR---GVPAEEIEKVANWSIQSLGLSLYADRLAGT---- 2070
Query: 295 GVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIH 353
SGG ++++ +I P L+ LDEPT+G+D + + I G+ VV T H
Sbjct: 2071 -YSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSH 2128
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 64.2 bits (156), Expect = 2e-11
Identities = 61/253 (24%), Positives = 111/253 (43%), Gaps = 48/253 (18%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLL---NLLSGRLMEPTVGGSITY------N 219
EK +N I+ + V AL+GPSG GK+T L N ++ + G I Y +
Sbjct: 33 EKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILD 92
Query: 220 DHPYSKSLKSKIGFVTQDDVLFP---HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVIN 276
+ +L+ +IG V Q FP + + L YA ++ K +D I
Sbjct: 93 SNINVVNLRREIGMVFQKPNPFPKSIYNNITHALKYAG-----------ERRKSVLDEIV 141
Query: 277 ELGLERC------QDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTT 330
E L + +D + + +SGG+++R+CI + + P++L LDEP S LD +
Sbjct: 142 EESLTKAALWDEVKDRLHSSAL--SLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPIS 199
Query: 331 ALRIVQMLQDIAEAGKTVVTTIH-QPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSS 389
+I +++ ++ E ++ T + Q + R+ D+ G L+ + +
Sbjct: 200 NAKIEELITELKEEYSIIIVTHNMQQALRV---SDRTAFFLNGDLVEYDQ---------- 246
Query: 390 IGCSPQIAMNPAE 402
+ QI +P +
Sbjct: 247 ---TEQIFTSPKQ 256
|
Length = 268 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 63.3 bits (154), Expect = 5e-11
Identities = 63/227 (27%), Positives = 113/227 (49%), Gaps = 29/227 (12%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP-------TVGGSITYNDH 221
+K LN I+ S+ G AL+G +GSGK+T+ L++G L+ TV G IT
Sbjct: 19 KKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDG-ITLT-- 75
Query: 222 PYSKSL---KSKIGFVTQD-DVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAI-DVIN 276
+K++ + K+G V Q+ D F TV + + + L N + + + + DV+
Sbjct: 76 --AKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFG----LENRAVPRPEMIKIVRDVLA 129
Query: 277 ELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQ 336
++G+ D S +SGG+++RV I + + P ++ LDE TS LD +I++
Sbjct: 130 DVGMLDYID-----SEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILK 184
Query: 337 MLQDIA-EAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382
+++ + + TV++ H + D++++L G LL G E
Sbjct: 185 LIRKLKKKNNLTVISITHDIDEA--NMADQVLVLDDGKLLAQGSPVE 229
|
Length = 282 |
| >gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Score = 62.9 bits (153), Expect = 7e-11
Identities = 54/204 (26%), Positives = 94/204 (46%), Gaps = 18/204 (8%)
Query: 159 VILKGMTSSE-EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSIT 217
V ++G++ + + I + I+ +V G++ A+MGPSG GKTTLL L+ G++ G I
Sbjct: 8 VDMRGVSFTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQI--APDHGEIL 65
Query: 218 YNDH---PYSKS----LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKR 270
++ S+S ++ ++ + Q LF + V + + Y LR L
Sbjct: 66 FDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYP--LREHTQLPAPLLHST 123
Query: 271 AIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTT 330
+ + +GL M +SGG +R + I + P L+ DEP G D T
Sbjct: 124 VMMKLEAVGLRGAAKLMPS-----ELSGGMARRAALARAIALEPDLIMFDEPFVGQDPIT 178
Query: 331 ALRIVQMLQDIAEA-GKTVVTTIH 353
+V+++ ++ A G T V H
Sbjct: 179 MGVLVKLISELNSALGVTCVVVSH 202
|
Length = 269 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.4 bits (152), Expect = 9e-11
Identities = 52/188 (27%), Positives = 93/188 (49%), Gaps = 19/188 (10%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS----LK 228
L G++ S+ G AL+GP+G+GK+TLL L+G + G + + ++
Sbjct: 21 LKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNG--IYLPQRGRVKVMGREVNAENEKWVR 78
Query: 229 SKIGFVTQD--DVLFPHLTVKETLTYAALLRLPNT-LTKQQKEKRAIDVINELGLERCQD 285
SK+G V QD D +F TV + + + + N L K + E+R + + + + +D
Sbjct: 79 SKVGLVFQDPDDQVFS-STVWDDVAFGPV----NMGLDKDEVERRVEEALKAVRMWDFRD 133
Query: 286 TMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAG 345
+S G++KRV I + ++P ++ LDEP + LD ++++L + G
Sbjct: 134 KP-----PYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQG 188
Query: 346 KTVVTTIH 353
KTV+ H
Sbjct: 189 KTVIVATH 196
|
Length = 274 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 64.3 bits (156), Expect = 1e-10
Identities = 46/174 (26%), Positives = 90/174 (51%), Gaps = 14/174 (8%)
Query: 184 EVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL---KSKIGFVTQDDVL 240
++ A +G +G+GKTT L++L+G L P G++ +L + +G Q ++L
Sbjct: 957 QITAFLGHNGAGKTTTLSILTGLL--PPTSGTVLVGGKDIETNLDAVRQSLGMCPQHNIL 1014
Query: 241 FPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGE 300
F HLTV E + + A L+ + + Q E A+ + + GL ++ + +SGG
Sbjct: 1015 FHHLTVAEHILFYAQLK-GRSWEEAQLEMEAM--LEDTGLHHKRNEE-----AQDLSGGM 1066
Query: 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQ 354
++++ + + + ++ LDEPTSG+D + I +L +G+T++ + H
Sbjct: 1067 QRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKY-RSGRTIIMSTHH 1119
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.1 bits (151), Expect = 1e-10
Identities = 55/208 (26%), Positives = 101/208 (48%), Gaps = 28/208 (13%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLL-------NLLSGRLMEPTV---GGSITY 218
+ L+ I+ +V AL+GPSG GK+T L +L+ G +E + G +I Y
Sbjct: 18 DFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENI-Y 76
Query: 219 NDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINEL 278
+ H L+ ++G V Q FP ++ E + Y LR+ K +R +
Sbjct: 77 DPHVDVVELRRRVGMVFQKPNPFPK-SIFENVAYG--LRVNGVKDKAYLAERVERSLRHA 133
Query: 279 GL-----ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALR 333
L +R ++ +G +SGG+++R+CI + + P +L +DEP S LD +
Sbjct: 134 ALWDEVKDRLHESALG------LSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQK 187
Query: 334 IVQMLQDIAEAGKTVVTTIH--QPSSRL 359
I +++ ++ +A T++ H Q ++R+
Sbjct: 188 IEELIHEL-KARYTIIIVTHNMQQAARV 214
|
Length = 253 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 63.4 bits (155), Expect = 1e-10
Identities = 59/218 (27%), Positives = 97/218 (44%), Gaps = 53/218 (24%)
Query: 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKS 229
K+IL I+ S PG + ++G +G+GK+TLL +++G D ++ +
Sbjct: 18 KEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGV-------------DKEFNGEARP 64
Query: 230 ----KIGFVTQDDVLFPHLTVKETL------TYAALLRL---------PNT-----LTKQ 265
K+G++ Q+ L P TV+E + AL R P+ L +Q
Sbjct: 65 APGIKVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQ 124
Query: 266 QKEKRAIDVINELGLE----------RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPS 315
+ + ID + L+ RC + V +SGGER+RV + ++ P
Sbjct: 125 AELQEIIDAADAWDLDRKLEIAMDALRCPP---WDADVTKLSGGERRRVALCRLLLSKPD 181
Query: 316 LLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIH 353
+L LDEPT+ LD+ + + Q LQ+ TVV H
Sbjct: 182 MLLLDEPTNHLDAESVAWLEQHLQEYP---GTVVAVTH 216
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 59.7 bits (146), Expect = 1e-10
Identities = 44/182 (24%), Positives = 73/182 (40%), Gaps = 66/182 (36%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS-----KSL 227
L+G++ SV GEV AL+G +G+GK+TL+ +LSG L +P G I + S +
Sbjct: 16 LDGVSLSVRRGEVHALLGENGAGKSTLMKILSG-LYKPD-SGEILVDGKEVSFASPRDAR 73
Query: 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTM 287
++ I V Q L+V E +Q +E
Sbjct: 74 RAGIAMVYQ-------LSVGE----------------RQM------------VE------ 92
Query: 288 IGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKT 347
I R ++ R ++I LDEPT+ L R+ ++++ + G
Sbjct: 93 I----ARALARNAR--------LLI------LDEPTAALTPAEVERLFKVIRRLRAQGVA 134
Query: 348 VV 349
V+
Sbjct: 135 VI 136
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 2e-10
Identities = 57/200 (28%), Positives = 86/200 (43%), Gaps = 51/200 (25%)
Query: 180 VNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP----------------Y 223
PG+V+ ++GP+G GK+T L +L+G L P +G Y D P Y
Sbjct: 97 PRPGKVVGILGPNGIGKSTALKILAGELK-PNLG---RYEDPPSWDEVIKRFRGTELQNY 152
Query: 224 SKSLKS-------KIGFVTQDDVLFPHL---TVKETLTYAALLRLPNTLTKQQKEKRAID 273
K L K +V L P + V E L K + + +
Sbjct: 153 FKKLYEGELRAVHKPQYVD----LIPKVVKGKVGELLK------------KVDERGKFDE 196
Query: 274 VINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALR 333
V+ LGLE D V +SGGE +RV I ++ + + F DEP+S LD L
Sbjct: 197 VVERLGLENVLDRD-----VSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLN 251
Query: 334 IVQMLQDIAEAGKTVVTTIH 353
++++++AE GK V+ H
Sbjct: 252 AARVIRELAEDGKYVIVVEH 271
|
Length = 591 |
| >gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.8 bits (148), Expect = 2e-10
Identities = 53/190 (27%), Positives = 93/190 (48%), Gaps = 20/190 (10%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228
E+ +LN + + G+ +A++G SG GK+TLL LL+G +E G + P +++ +
Sbjct: 24 ERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAG--LETPSAGELLAGTAPLAEA-R 80
Query: 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL-ERCQDTM 287
+ QD L P V + + L L K Q A+ + +GL +R +
Sbjct: 81 EDTRLMFQDARLLPWKKVIDNVG----LGL-----KGQWRDAALQALAAVGLADRANE-- 129
Query: 288 IGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI-AEAGK 346
+ +SGG+++RV + +I P LL LDEP LD+ T + + +++ + + G
Sbjct: 130 ----WPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGF 185
Query: 347 TVVTTIHQPS 356
TV+ H S
Sbjct: 186 TVLLVTHDVS 195
|
Length = 257 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 62.5 bits (152), Expect = 2e-10
Identities = 53/188 (28%), Positives = 87/188 (46%), Gaps = 10/188 (5%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPY-----SKSL 227
L+GI V PGE + L G +G+GK+TL+ +LSG T G I ++ P +
Sbjct: 17 LDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTE 76
Query: 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTK-QQKEKRAIDVINELGLERCQDT 286
++ I + Q+ L P L+V E + + LP RA +++ EL L+ T
Sbjct: 77 RAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVT 136
Query: 287 MIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGK 346
G + GG+++ V I + LL LDEP+S L ++ +++D+ G
Sbjct: 137 RPVGDY----GGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGV 192
Query: 347 TVVTTIHQ 354
V H+
Sbjct: 193 ACVYISHK 200
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.1 bits (148), Expect = 3e-10
Identities = 53/195 (27%), Positives = 88/195 (45%), Gaps = 34/195 (17%)
Query: 185 VLALMGPSGSGKTTLLNLL------------SGRLMEPTVGGSITYNDHPYSKSLKSKIG 232
V A++GPSG GK+T L + +G LM G Y L+ KIG
Sbjct: 67 VTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALM---FDGEDIYGKFTDEVLLRKKIG 123
Query: 233 FVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC------QDT 286
V Q FP ++ + + Y L +K+ ++ I E L + D
Sbjct: 124 MVFQKPNPFPK-SIFDNIAYGPRLH-------GINDKKQLEEIVEKSLRKAALWDEVSDR 175
Query: 287 MIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGK 346
+ + G+SGG+++R+C+ + + P +L LDEPTS LD +I ++Q++
Sbjct: 176 LDKNAL--GLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQEL-RGSY 232
Query: 347 TVVTTIH--QPSSRL 359
T++ H Q +SR+
Sbjct: 233 TIMIVTHNMQQASRV 247
|
Length = 286 |
| >gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 61.7 bits (150), Expect = 3e-10
Identities = 55/195 (28%), Positives = 95/195 (48%), Gaps = 25/195 (12%)
Query: 174 NGITGSVNPGEVLALMGPSGSGKT----TLLNLLS--GRLMEPTVGGSITYN-------- 219
N + S+ GE L ++G SGSGK+ L+ LL+ GR +GGS T+N
Sbjct: 33 NDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGR-----IGGSATFNGREILNLP 87
Query: 220 DHPYSKSLKSKIGFVTQDDV--LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINE 277
+ +K +I + QD + L P++ V E L +L L ++K + + ++ +++
Sbjct: 88 EKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLM--EVLMLHKGMSKAEAFEESVRMLDA 145
Query: 278 LGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQM 337
+ + + M + SGG R+RV I ++ P LL DEPT+ LD T +I+ +
Sbjct: 146 VKMPEARKRM--KMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTL 203
Query: 338 LQDIAEAGKTVVTTI 352
L ++ T + I
Sbjct: 204 LNELKREFNTAIIMI 218
|
Length = 330 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.8 bits (147), Expect = 3e-10
Identities = 57/221 (25%), Positives = 99/221 (44%), Gaps = 25/221 (11%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLL-------NLLSGRLMEPTVGGSITYNDHPYSK 225
L I V+ +V AL+GPSG GK+T L +L G E G I + D+
Sbjct: 32 LKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYE---GEIILHPDNVNIL 88
Query: 226 S-------LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINEL 278
S ++ +I V Q FP ++ E + Y LR+ + E+R + +
Sbjct: 89 SPEVDPIEVRMRISMVFQKPNPFPK-SIFENVAYG--LRIRGVKRRSILEERVENALRNA 145
Query: 279 GL-ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQM 337
L + +D + G +SGG+++R+CI + +P +L DEPTS LD I ++
Sbjct: 146 ALWDEVKDRL--GDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEEL 203
Query: 338 LQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378
+ D+ ++ T + + + + +G+ L+ FG
Sbjct: 204 ISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGE--LIEFG 242
|
Length = 265 |
| >gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.8 bits (147), Expect = 4e-10
Identities = 51/193 (26%), Positives = 91/193 (47%), Gaps = 30/193 (15%)
Query: 184 EVLALMGPSGSGKTTLL---NLLSGRLMEPTVGGSITYNDHPY------SKSLKSKIGFV 234
+++A +GPSG GK+TLL N ++ + V G + Y D S L+ ++G V
Sbjct: 47 KIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQVGMV 106
Query: 235 TQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC------QDTMI 288
Q FP ++ E + +A + K +D + E L R +D +
Sbjct: 107 FQRPNPFPK-SIYENIAFAP---------RANGYKGNLDELVEDSLRRAAIWEEVKDKLK 156
Query: 289 GGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTV 348
+SGG+++R+CI I + P +L +DEP S LD + ++ ++ ++ E T+
Sbjct: 157 EKG--TALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQ-YTI 213
Query: 349 VTTIH--QPSSRL 359
+ H Q +SR+
Sbjct: 214 IMVTHNMQQASRV 226
|
Length = 274 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.6 bits (147), Expect = 4e-10
Identities = 50/184 (27%), Positives = 93/184 (50%), Gaps = 27/184 (14%)
Query: 183 GEVLALMGPSGSGKTTLLNLLS--GRLMEP-TVGGSITYN-DHPYSKSL-----KSKIGF 233
G+V AL+GPSG GK+T+L L+ L+E ++ G + ++ Y + + +IG
Sbjct: 39 GKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGM 98
Query: 234 VTQDDVLFPHLTVKETLTYAALLRLP------NTLTKQQKEKRAIDVINELGLERCQDTM 287
V Q FP ++ E + + A R+ + L ++ K A+ + C+D +
Sbjct: 99 VFQQPNPFPK-SIYENIAFGA--RINGYTGDMDELVERSLRKAAV-------WDECKDKL 148
Query: 288 IGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKT 347
+ +SGG+++R+CI I I P ++ +DEP S LD + L+I + + ++ +
Sbjct: 149 NESGY--SLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTI 206
Query: 348 VVTT 351
V+ T
Sbjct: 207 VIVT 210
|
Length = 269 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 61.4 bits (150), Expect = 6e-10
Identities = 57/195 (29%), Positives = 86/195 (44%), Gaps = 46/195 (23%)
Query: 182 PGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLF 241
G+V ++GP+G GKTT + +LSG L+ P +G Y + P + D+VL
Sbjct: 98 EGKVTGILGPNGIGKTTAVKILSGELI-PNLGD---YEEEP------------SWDEVL- 140
Query: 242 PHLTVKETLTYAALLR---------------LP-------NTLTKQQKEKRAID-VINEL 278
E Y L +P L K+ E+ +D V+ L
Sbjct: 141 KRFRGTELQNYFKKLYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKVDERGKLDEVVERL 200
Query: 279 GLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQML 338
GLE D I +SGGE +RV I ++ + F DEPTS LD L + +++
Sbjct: 201 GLENILDRDI-----SELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLI 255
Query: 339 QDIAEAGKTVVTTIH 353
+++AE GK V+ H
Sbjct: 256 RELAE-GKYVLVVEH 269
|
Length = 590 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 58.6 bits (142), Expect = 7e-10
Identities = 48/214 (22%), Positives = 93/214 (43%), Gaps = 38/214 (17%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SL 227
+L ++ V GE + ++G +G+GK+TL+ L R +E G I + S L
Sbjct: 23 VLKNVSFKVKAGEKIGIVGRTGAGKSTLILALF-RFLEAE-EGKIEIDGIDISTIPLEDL 80
Query: 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTM 287
+S + + QD LF T++ L D +E E +
Sbjct: 81 RSSLTIIPQDPTLFSG-TIRSNL----------------------DPFDEYSDEEIYGAL 117
Query: 288 I---GGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA 344
GG +S G+R+ +C+ ++ P +L LDE T+ +D T I + +++
Sbjct: 118 RVSEGGL---NLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIRE-EFT 173
Query: 345 GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378
T++T H+ + + +DK++++ G + +
Sbjct: 174 NSTILTIAHRLRTII--DYDKILVMDAGEVKEYD 205
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.1 bits (149), Expect = 8e-10
Identities = 49/182 (26%), Positives = 83/182 (45%), Gaps = 25/182 (13%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPY-----SKSL 227
L+ ++ V GE+++L G +G+GK+TL+ +LSG T G I + +
Sbjct: 21 LDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTE 80
Query: 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTK------QQKEKRAIDVINELGLE 281
++ I + Q+ L L+V E + L N +T RA ++ +L L+
Sbjct: 81 RAGIAIIHQELALVKELSVLENIF------LGNEITPGGIMDYDAMYLRAQKLLAQLKLD 134
Query: 282 RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGL-DSTTA--LRIVQML 338
T V + G+++ V I + LL LDEPT+ L +S TA L I++ L
Sbjct: 135 INPATP-----VGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDL 189
Query: 339 QD 340
+
Sbjct: 190 KA 191
|
Length = 506 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.3 bits (143), Expect = 9e-10
Identities = 49/190 (25%), Positives = 91/190 (47%), Gaps = 23/190 (12%)
Query: 166 SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTL---LNLLSGRLMEPTVGGSITY-NDH 221
+ + IL G++ + +V A++GPSG GK+T LN ++ E V G + + N +
Sbjct: 16 YYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQN 75
Query: 222 PYSKS-----LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVIN 276
Y + L+ ++ V LFP ++V + + Y + + K ID I
Sbjct: 76 IYERRVNLNRLRRQVSMVHPKPNLFP-MSVYDNVAYGVKI-------VGWRPKLEIDDIV 127
Query: 277 ELGLERCQ-----DTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTA 331
E L+ I S + +SGG+++R+CI + + P +L +DEP GLD +
Sbjct: 128 ESALKDADLWDEIKHKIHKSALD-LSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIAS 186
Query: 332 LRIVQMLQDI 341
+++ ++Q +
Sbjct: 187 MKVESLIQSL 196
|
Length = 261 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 60.8 bits (148), Expect = 1e-09
Identities = 46/177 (25%), Positives = 81/177 (45%), Gaps = 25/177 (14%)
Query: 178 GSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQD 237
G + GEV+ ++GP+G GKTT + LL+G +++P G S K + +++ D
Sbjct: 362 GEIYDGEVIGILGPNGIGKTTFVKLLAG-VIKPDEGSEEDLK-----VSYKPQ--YISPD 413
Query: 238 DVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVS 297
+ TV++ L A ++ K +++ L LE + V +S
Sbjct: 414 ---YDG-TVEDLLRSAIRSAFGSSYFKT-------EIVKPLNLEDLLE-----RPVDELS 457
Query: 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIH 353
GGE +RV I + L LDEP++ LD + + ++++ E KT + H
Sbjct: 458 GGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDH 514
|
Length = 591 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 60.2 bits (146), Expect = 1e-09
Identities = 51/216 (23%), Positives = 98/216 (45%), Gaps = 24/216 (11%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS-----KSL 227
++ ++ S+ GE+L + G G+G+T L+ L G G++ N P +++
Sbjct: 276 VDDVSFSLRRGEILGVAGLVGAGRTELVQALFG-AYPGKFEGNVFINGKPVDIRNPAQAI 334
Query: 228 KSKIGFVTQD---DVLFPHLTVKETLTYAALLRLPN-TLTKQQKEKRAIDV-INELGLER 282
++ I V +D + P L V + +T + L E + I I L ++
Sbjct: 335 RAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKT 394
Query: 283 CQ-DTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI 341
IG +SGG +++ + ++ NP +L LDEPT G+D I +++ +
Sbjct: 395 ASPFLPIGR-----LSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQL 449
Query: 342 AEAGKTVVTTIHQPSSRLFHKF---DKLILLGKGSL 374
A+ G ++ SS L D+++++G+G L
Sbjct: 450 AQEGVAIIVV----SSELAEVLGLSDRVLVIGEGKL 481
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 58.3 bits (141), Expect = 1e-09
Identities = 49/188 (26%), Positives = 88/188 (46%), Gaps = 15/188 (7%)
Query: 166 SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK 225
S E+ + + V+ GE L + G +G+GKTTLL +L+G L + G I + ++
Sbjct: 20 SRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVES--GQIQIDGKTATR 77
Query: 226 SLKSK-IGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQ 284
+S+ + ++ L L+ E L + L + +Q A+ ++ GL +
Sbjct: 78 GDRSRFMAYLGHLPGLKADLSTLENLHFLCGL---HGRRAKQMPGSALAIV---GLAGYE 131
Query: 285 DTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQ-DIAE 343
DT+ VR +S G++KR+ + + L LDEP + LD + +M+ +
Sbjct: 132 DTL-----VRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRG 186
Query: 344 AGKTVVTT 351
G +VTT
Sbjct: 187 GGAALVTT 194
|
Length = 214 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.7 bits (144), Expect = 1e-09
Identities = 48/192 (25%), Positives = 91/192 (47%), Gaps = 15/192 (7%)
Query: 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLL-------NLLSGRLMEPTVG--GSITYND 220
K +L+ + + +V A +GPSG GK+T L +L+ G E + G+ T +
Sbjct: 95 KHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSK 154
Query: 221 HPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL 280
S L+++IG V Q F +++ + + Y R ++ EK + L
Sbjct: 155 KISSLELRTRIGMVFQKPTPF-EMSIFDNVAYGP--RNNGINDRKILEKIVEKSLKSAAL 211
Query: 281 -ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQ 339
+ +D + +SGG+++R+CI I + P +L +DEPTS LD +I +++
Sbjct: 212 WDEVKDDLDKAG--NALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELIL 269
Query: 340 DIAEAGKTVVTT 351
++ + ++ T
Sbjct: 270 ELKKKYSIIIVT 281
|
Length = 329 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 59.3 bits (144), Expect = 2e-09
Identities = 51/188 (27%), Positives = 78/188 (41%), Gaps = 26/188 (13%)
Query: 176 ITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-SLKSKI--G 232
I+ V GE+L L G G+G+T L L G + P GG I N + S ++ G
Sbjct: 282 ISLEVRAGEILGLAGVVGAGRTELAETLYG--LRPARGGRIMLNGKEINALSTAQRLARG 339
Query: 233 FV-----TQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTM 287
V Q L+ L AL + + A+ LER + +
Sbjct: 340 LVYLPEDRQSSGLY--LDAPLAWNVCALTHNRRGFWIKPARENAV-------LERYRRAL 390
Query: 288 IGGSF------VRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI 341
F R +SGG +++V I + +P LL +DEPT G+D + I Q+++ I
Sbjct: 391 -NIKFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSI 449
Query: 342 AEAGKTVV 349
A V+
Sbjct: 450 AAQNVAVL 457
|
Length = 510 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 55.9 bits (136), Expect = 2e-09
Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 17/87 (19%)
Query: 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME 209
++ +++ K +L I+ ++NPG+ + L+G +G+GK+TLL L++G L E
Sbjct: 1 IELENLSKTY--------GGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGEL-E 51
Query: 210 PTVGGSITYNDHPYSKSLKSKIGFVTQ 236
P G +T+ KIG+ Q
Sbjct: 52 PDE-GIVTWGS-------TVKIGYFEQ 70
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 58.2 bits (140), Expect = 2e-09
Identities = 59/229 (25%), Positives = 114/229 (49%), Gaps = 26/229 (11%)
Query: 168 EEKDI--LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME----PTVGGSITYNDH 221
+E D+ LNG++ S+ GE ++++G +GSGK+T L+ G E + G + ++
Sbjct: 16 KESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAEN 75
Query: 222 PYSKSLKSKIGFVTQD-DVLFPHLTVKETLTYAALLRLPNT-LTKQQKEKR---AIDVIN 276
++ L+ KIG V Q+ D F TV++ + + + N + +++ KR A+ +N
Sbjct: 76 VWN--LRRKIGMVFQNPDNQFVGATVEDDVAFG----MENQGIPREEMIKRVDEALLAVN 129
Query: 277 ELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQ 336
L + + + SGG+++RV + I + P ++ LDE TS LD T I++
Sbjct: 130 MLDFKTREPARL--------SGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMR 181
Query: 337 MLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385
++ +I E + V +I D+++++ G ++ SE A
Sbjct: 182 VIHEIKEKYQLTVLSITHDLDEAASS-DRILVMKAGEIIKEAAPSELFA 229
|
Length = 277 |
| >gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 59.0 bits (143), Expect = 2e-09
Identities = 54/195 (27%), Positives = 88/195 (45%), Gaps = 27/195 (13%)
Query: 174 NGITGSVNPGEVLALMGPSGSGKTTL------LNLLS-GRLMEPTVGGSI--TYNDHPYS 224
+ + + GE+ LMG SGSGK+TL LN +S G ++ GS+ D
Sbjct: 41 HNASLDIEEGEICVLMGLSGSGKSTLLRAVNGLNPVSRGSVLVKDGDGSVDVANCDAATL 100
Query: 225 KSLKSK-IGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC 283
+ L++ + V Q L P TV+E + + ++ + K ++ KR + + +GL +
Sbjct: 101 RRLRTHRVSMVFQQFALLPWRTVEENVAFGLEMQ---GMPKAERRKRVDEQLELVGLAQW 157
Query: 284 QDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQD--- 340
D G +SGG ++RV + +L +DEP S LD I LQD
Sbjct: 158 ADRKPG-----ELSGGMQQRVGLARAFATEAPILLMDEPFSALDPL----IRTQLQDELL 208
Query: 341 --IAEAGKTVVTTIH 353
++ KT+V H
Sbjct: 209 ELQSKLKKTIVFVSH 223
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382 |
| >gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 57.8 bits (140), Expect = 3e-09
Identities = 53/187 (28%), Positives = 89/187 (47%), Gaps = 23/187 (12%)
Query: 179 SVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP-YSKSLKSKIGFVTQD 237
G+VL L+GP+G GK+T L +L+G+L P +G ++D P + + L G Q+
Sbjct: 22 VPREGQVLGLVGPNGIGKSTALKILAGKLK-PNLG---KFDDPPDWDEILDEFRGSELQN 77
Query: 238 DVLFPHL---TVKETLTYAALLRLPNT-------LTKQQKEKRAID-VINELGLERCQDT 286
F L VK + + +P L K++ E+ +D ++++L L D
Sbjct: 78 --YFTKLLEGDVKVIVKPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHVLDR 135
Query: 287 MIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGK 346
I +SGGE +RV I + + F DEP+S LD L ++++++AE
Sbjct: 136 NI-----DQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDN 190
Query: 347 TVVTTIH 353
V+ H
Sbjct: 191 YVLVVEH 197
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 59.2 bits (143), Expect = 4e-09
Identities = 64/236 (27%), Positives = 107/236 (45%), Gaps = 43/236 (18%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKI 231
+L I+ + G++LA+ G +GSGK++LL ++ G L EP+ G I ++ +I
Sbjct: 441 VLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGEL-EPS-EGKIKHS---------GRI 489
Query: 232 GFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER------CQD 285
F Q + P T+K+ + + E R VI LE +D
Sbjct: 490 SFSPQTSWIMPG-TIKDNIIFGL----------SYDEYRYTSVIKACQLEEDIALFPEKD 538
Query: 286 TMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQ--MLQDIAE 343
+ G +SGG+R R+ + + + L LD P + LD T I + + + ++
Sbjct: 539 KTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSN 598
Query: 344 AGKTVVTTIHQPSSRLFH--KFDKLILLGKGSLLYFGKASEAMAY---FSS--IGC 392
+ +VT S+L H K DK++LL +G ++G SE A FSS +G
Sbjct: 599 KTRILVT------SKLEHLKKADKILLLHEGVCYFYGTFSELQAKRPDFSSLLLGL 648
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Score = 58.1 bits (141), Expect = 5e-09
Identities = 55/203 (27%), Positives = 89/203 (43%), Gaps = 64/203 (31%)
Query: 159 VILK-GMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSIT 217
++L G+ S ++ IL+ ++ VNPGE ++GP+G+GK+TLL+L++G
Sbjct: 261 IVLNNGVVSYNDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITG------------ 308
Query: 218 YNDHP--YSKSL----------------KSKIGFVTQDDVLFPHL------TVKETL--- 250
DHP YS L K IG+V+ HL +V+ +
Sbjct: 309 --DHPQGYSNDLTLFGRRRGSGETIWDIKKHIGYVSSS----LHLDYRVSTSVRNVILSG 362
Query: 251 ------TYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304
Y A +QQ K A ++ LG+ D + +S G+++
Sbjct: 363 FFDSIGIYQA------VSDRQQ--KLAQQWLDILGI----DKRTADAPFHSLSWGQQRLA 410
Query: 305 CIGNEIIINPSLLFLDEPTSGLD 327
I ++ +P+LL LDEP GLD
Sbjct: 411 LIVRALVKHPTLLILDEPLQGLD 433
|
Length = 490 |
| >gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 7e-09
Identities = 59/223 (26%), Positives = 108/223 (48%), Gaps = 24/223 (10%)
Query: 176 ITGSVNPGEVLALMGPSGSGKT----TLLNLLS--GRLMEPTVGGSITYNDHPYSK-SLK 228
I+ SV GEV+ ++G SGSGK+ ++ L+ GR+M + +N + S K
Sbjct: 26 ISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVM----AEKLEFNGQDLQRISEK 81
Query: 229 SK-------IGFVTQDDV--LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG 279
+ + + QD + L P TV + A +++ K+ + +RAID++N++G
Sbjct: 82 ERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEA--IKVHQGGNKKTRRQRAIDLLNQVG 139
Query: 280 LERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQ 339
+ + + +SGG +RV I I P LL DEPT+ LD T +I+++L
Sbjct: 140 IPDPASRL--DVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLL 197
Query: 340 DIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382
++ + + I + + K+I++ G ++ GKA +
Sbjct: 198 ELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGKAHD 240
|
Length = 326 |
| >gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 57.9 bits (140), Expect = 9e-09
Identities = 49/195 (25%), Positives = 89/195 (45%), Gaps = 15/195 (7%)
Query: 180 VNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDV 239
+ PG+V+A++G SG+GKTTLL ++ G + Y
Sbjct: 406 IKPGDVVAVVGQSGAGKTTLLRMILGAQKG--------RGEEKYRPDSGKVEVPKNTVSA 457
Query: 240 LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299
L P + +L + +K A++++N GL D ++ +S G
Sbjct: 458 LIPG-EYEPEFGEVTILE--HLRSKTGDLNAAVEILNRAGL---SDAVLYRRKFSELSTG 511
Query: 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA-EAGKTVVTTIHQPSSR 358
+++R + + P++L +DE + LD TA+R+ + + ++A EAG T++ H+P
Sbjct: 512 QKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVTHRPEVG 571
Query: 359 LFHKFDKLILLGKGS 373
+ D LIL+G G
Sbjct: 572 NALRPDTLILVGYGK 586
|
Length = 593 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.1 bits (139), Expect = 9e-09
Identities = 56/205 (27%), Positives = 90/205 (43%), Gaps = 48/205 (23%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK------- 225
LN ++ + GE+ ++G SG+GK+TL+ ++ L PT G + + +
Sbjct: 21 LNNVSLHIPAGEIFGVIGASGAGKSTLIRCIN-LLERPT-SGRVLVDGQDLTALSEKELR 78
Query: 226 SLKSKIGFVTQ-----------DDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDV 274
+ +IG + Q D+V P L L T K + + R
Sbjct: 79 KARRQIGMIFQHFNLLSSRTVFDNVALP-------------LELAGT-PKAEIKAR---- 120
Query: 275 INEL----GLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTT 330
+ EL GL D + +SGG+++RV I + NP +L DE TS LD T
Sbjct: 121 VTELLELVGLSDKADR-----YPAQLSGGQKQRVAIARALASNPKVLLCDEATSALDPAT 175
Query: 331 ALRIVQMLQDI-AEAGKTVVTTIHQ 354
I+++L+DI E G T+V H+
Sbjct: 176 TRSILELLKDINRELGLTIVLITHE 200
|
Length = 343 |
| >gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C | Back alignment and domain information |
|---|
Score = 56.0 bits (135), Expect = 1e-08
Identities = 62/219 (28%), Positives = 98/219 (44%), Gaps = 34/219 (15%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKI 231
+L I + GE+LA+ G +GSGKT+LL L+ G L EP+ G I ++ +I
Sbjct: 52 VLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGEL-EPS-EGKIKHS---------GRI 100
Query: 232 GFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC------QD 285
F +Q + P T+KE + + E R V+ LE +D
Sbjct: 101 SFSSQFSWIMPG-TIKENIIFGV----------SYDEYRYKSVVKACQLEEDITKFPEKD 149
Query: 286 TMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAG 345
+ G +SGG+R R+ + + + L LD P LD T I + A
Sbjct: 150 NTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMAN 209
Query: 346 KTVVTTIHQPSSRLFH--KFDKLILLGKGSLLYFGKASE 382
KT + +S++ H K DK+++L +GS ++G SE
Sbjct: 210 KTRILV----TSKMEHLKKADKILILHEGSSYFYGTFSE 244
|
The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 56.7 bits (138), Expect = 2e-08
Identities = 50/179 (27%), Positives = 74/179 (41%), Gaps = 39/179 (21%)
Query: 178 GSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQD 237
G + GEV+ ++GP+G GKTT LL+G L +P G + KI + Q
Sbjct: 360 GEIYEGEVIGIVGPNGIGKTTFAKLLAGVL-KPDEG----------EVDPELKISYKPQ- 407
Query: 238 DVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAID-------VINELGLERCQDTMIGG 290
++ T LLR + +I L LER D
Sbjct: 408 -----YIKPDYDGTVEDLLR---------SITDDLGSSYYKSEIIKPLQLERLLD----- 448
Query: 291 SFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTV 348
V+ +SGGE +RV I + + L LDEP++ LD L + + ++ IAE T
Sbjct: 449 KNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATA 507
|
Length = 590 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.6 bits (137), Expect = 2e-08
Identities = 47/167 (28%), Positives = 83/167 (49%), Gaps = 19/167 (11%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS-----KSL 227
+N ++ ++ GE+L + G G+G+T L+ +L G L P G +T + H L
Sbjct: 268 VNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGAL--PRTSGYVTLDGHEVVTRSPQDGL 325
Query: 228 KSKIGFVTQD---DVLFPHLTVKETLTYAALLRLPNTL--TKQQKEKRAI-DVINELGLE 281
+ I ++++D D L ++VKE ++ AL K E++A+ D I ++
Sbjct: 326 ANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIK 385
Query: 282 R-CQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLD 327
+ IG +SGG +++V I ++ P +L LDEPT G+D
Sbjct: 386 TPSMEQAIGL-----LSGGNQQKVAIARGLMTRPKVLILDEPTRGVD 427
|
Length = 501 |
| >gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 2e-08
Identities = 52/176 (29%), Positives = 84/176 (47%), Gaps = 27/176 (15%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228
++ IL+ I ++ PG + L+G +G+GK+TL+ LL+G L P G + +K +
Sbjct: 324 DRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGEL-APVSG------EIGLAKGI- 375
Query: 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMI 288
K+G+ Q + F L E+ L RL +Q+ D + G + + T
Sbjct: 376 -KLGYFAQHQLEF--LRADES-PLQHLARLAPQELEQKLR----DYLGGFGFQGDKVTEE 427
Query: 289 GGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA 344
F SGGE+ R+ + + P+LL LDEPT+ LD + M Q + EA
Sbjct: 428 TRRF----SGGEKARLVLALIVWQRPNLLLLDEPTNHLD-------LDMRQALTEA 472
|
Length = 638 |
| >gnl|CDD|226639 COG4170, SapD, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 3e-08
Identities = 52/239 (21%), Positives = 105/239 (43%), Gaps = 31/239 (12%)
Query: 164 MTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP--TVGGSITYND- 220
TS ++ ++ ++N GE+ L+G SGSGK+ + + G + + ++D
Sbjct: 14 KTSQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDI 73
Query: 221 -------HPYSKSLKSKIGFVTQD--DVLFPHLTVKETLTYAALLRLPNTLTKQQ----- 266
K + + + Q+ L P V L +P K +
Sbjct: 74 DLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQN----IPAWTYKGRWWQRF 129
Query: 267 --KEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTS 324
+++RAI++++ +G++ +D M S+ ++ GE ++V I + P LL DEPT+
Sbjct: 130 GWRKRRAIELLHRVGIKDHKDIM--RSYPYELTEGECQKVMIAIALANQPRLLIADEPTN 187
Query: 325 GLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383
++ TT +I ++L + + T + I + DK+ ++LY G+ E+
Sbjct: 188 SMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKI------NVLYCGQTVES 240
|
Length = 330 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 55.9 bits (135), Expect = 5e-08
Identities = 56/226 (24%), Positives = 101/226 (44%), Gaps = 29/226 (12%)
Query: 166 SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK 225
S E+ L+ I V G ++A++G +G GKT+L++ + G L P S+
Sbjct: 626 SKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGEL-PPRSDASVV-------- 676
Query: 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQD 285
++ + +V Q +F + TV++ + + + ++ +RAIDV L+ D
Sbjct: 677 -IRGTVAYVPQVSWIF-NATVRDNILFGSPF-------DPERYERAIDVT---ALQHDLD 724
Query: 286 TMIGGSFV----RGV--SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQ 339
+ GG RGV SGG+++RV + + N + D+P S LD+ ++
Sbjct: 725 LLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCI 784
Query: 340 DIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385
GKT V +Q + D++IL+ +G + G E
Sbjct: 785 KDELRGKTRVLVTNQ--LHFLSQVDRIILVHEGMIKEEGTYEELSN 828
|
Length = 1622 |
| >gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.5 bits (132), Expect = 9e-08
Identities = 44/183 (24%), Positives = 80/183 (43%), Gaps = 46/183 (25%)
Query: 159 VILKGMTSS-EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSIT 217
+ ++ +T + + + + GE LA++G +G GKTTLL L G L EP G++
Sbjct: 320 LEVENLTKGFDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGEL-EPD-SGTVK 377
Query: 218 YNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINE 277
+++ + IG+ QD +A N LT D +++
Sbjct: 378 WSE-------NANIGYYAQD--------------HAY--DFENDLT-------LFDWMSQ 407
Query: 278 LGLERCQDTMIGGSF-------------VRGVSGGERKRVCIGNEIIINPSLLFLDEPTS 324
E + + G+ V+ +SGGE+ R+ G ++ P++L +DEPT+
Sbjct: 408 WRQEGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTN 467
Query: 325 GLD 327
+D
Sbjct: 468 HMD 470
|
Length = 530 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 55.0 bits (132), Expect = 9e-08
Identities = 43/148 (29%), Positives = 80/148 (54%), Gaps = 11/148 (7%)
Query: 225 KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTL--TKQQKEKRAIDVINELGLER 282
K L++ V+Q+ +LF ++++ E + + + T K+ + AID E L
Sbjct: 1292 KDLRNLFSIVSQEPMLF-NMSIYENIKFG---KEDATREDVKRACKFAAIDEFIE-SLPN 1346
Query: 283 CQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA 342
DT +G + + +SGG+++R+ I ++ P +L LDE TS LDS + I + + DI
Sbjct: 1347 KYDTNVG-PYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIK 1405
Query: 343 E-AGKTVVTTIHQPSSRLFHKFDKLILL 369
+ A KT++T H+ +S + DK+++
Sbjct: 1406 DKADKTIITIAHRIAS--IKRSDKIVVF 1431
|
Length = 1466 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 9e-08
Identities = 51/200 (25%), Positives = 86/200 (43%), Gaps = 24/200 (12%)
Query: 168 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS--- 224
++ +L I SV +AL+G +GSGK+TL +LL G P G I + P S
Sbjct: 352 DDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYY--PLTEGEIRLDGRPLSSLS 409
Query: 225 -KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC 283
L+ + V QD V+ A TL + E++ + + L
Sbjct: 410 HSVLRQGVAMVQQDPVVL-----------ADTFLANVTLGRDISEEQVWQALETVQLAEL 458
Query: 284 QDTMIGGSFVR------GVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQM 337
++ G + +S G+++ + + ++ P +L LDE T+ +DS T I Q
Sbjct: 459 ARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQA 518
Query: 338 LQDIAEAGKTVVTTIHQPSS 357
L + E T+V H+ S+
Sbjct: 519 LAAVREH-TTLVVIAHRLST 537
|
Length = 592 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 54.0 bits (131), Expect = 1e-07
Identities = 60/218 (27%), Positives = 95/218 (43%), Gaps = 53/218 (24%)
Query: 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS----K 225
K IL I+ S PG + ++G +G+GK+TLL +++G D +
Sbjct: 20 KQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGV-------------DKEFEGEARP 66
Query: 226 SLKSKIGFVTQDDVLFPHLTVKETL------TYAALLRL---------PN-----TLTKQ 265
+ K+G++ Q+ L P TV+E + AAL R P+ +Q
Sbjct: 67 APGIKVGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQ 126
Query: 266 QKEKRAIDVINELGLE----------RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPS 315
+ + ID + L+ RC + V +SGGER+RV + ++ P
Sbjct: 127 GELQEIIDAADAWDLDSQLEIAMDALRCPP---WDAKVTKLSGGERRRVALCRLLLEKPD 183
Query: 316 LLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIH 353
+L LDEPT+ LD+ + + Q L D G TVV H
Sbjct: 184 MLLLDEPTNHLDAESVAWLEQFLHDY--PG-TVVAVTH 218
|
Length = 556 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.7 bits (129), Expect = 2e-07
Identities = 50/182 (27%), Positives = 84/182 (46%), Gaps = 28/182 (15%)
Query: 179 SVNPGEVLALMGPSGSGKT-TLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQD 237
S+ GE LA++G SGSGK+ T L L+ RL+E GG + + + + I Q
Sbjct: 38 SLQRGETLAIVGESGSGKSVTALALM--RLLEQA-GGLVQCDKMLLRRRSRQVIELSEQS 94
Query: 238 DV--------------------LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINE 277
L P TV E + A +RL ++++ A ++++
Sbjct: 95 AAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQI--AESIRLHQGASREEAMVEAKRMLDQ 152
Query: 278 LGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQM 337
+ + Q I + +SGG R+RV I + P++L DEPT+ LD T +I+Q+
Sbjct: 153 VRIPEAQ--TILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQL 210
Query: 338 LQ 339
++
Sbjct: 211 IK 212
|
Length = 623 |
| >gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR | Back alignment and domain information |
|---|
Score = 52.2 bits (125), Expect = 2e-07
Identities = 55/226 (24%), Positives = 99/226 (43%), Gaps = 26/226 (11%)
Query: 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225
K +L + + PG+ + + G +GSGK++L L+ M G I + SK
Sbjct: 34 KPVLKHVKAYIKPGQKVGICGRTGSGKSSLS--LAFFRMVDIFDGKIVIDGIDISKLPLH 91
Query: 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQD 285
+L+S++ + QD +LF + +R + + R + + L+
Sbjct: 92 TLRSRLSIILQDPILF-----------SGSIRFNLDPECKCTDDRLWEALEIAQLKNMVK 140
Query: 286 TMIGGSFVRGVSGGE------RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQ 339
++ GG GGE R+ C+ + S+L +DE T+ +D T I+Q +
Sbjct: 141 SLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATE-NILQKVV 199
Query: 340 DIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385
A A +TVVT H+ S+ L D +++L +G L+ +A
Sbjct: 200 MTAFADRTVVTIAHRVSTIL--DADLVLVLSRGILVECDTPENLLA 243
|
The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257 |
| >gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 2e-07
Identities = 59/246 (23%), Positives = 111/246 (45%), Gaps = 33/246 (13%)
Query: 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME 209
+K +V+YK + S EK L+ + V GE L ++G +GSGK+T+ ++ L+
Sbjct: 5 IKCKNVSYK--YESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLI- 61
Query: 210 PTVGGSITYN----DHPYSKSLKSKIGFVTQD-DVLFPHLTVKETLTYAALLRLPNTLTK 264
P+ G D +++K G V Q+ D V+E + + P L
Sbjct: 62 PSEGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFG-----PENLGI 116
Query: 265 QQKEKRAIDVINELGLERCQDTM--IGGSFVRG-----VSGGERKRVCIGNEIIINPSLL 317
+E R ER +++ +G R +SGG+++RV I + + P +
Sbjct: 117 PPEEIR----------ERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECI 166
Query: 318 FLDEPTSGLDSTTALRIVQMLQDI-AEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376
DEPT+ LD + +V ++++ + G T++ H + + D++I++ G ++
Sbjct: 167 IFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAV--EADRIIVMDSGKVVM 224
Query: 377 FGKASE 382
G E
Sbjct: 225 EGTPKE 230
|
Length = 280 |
| >gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.3 bits (125), Expect = 2e-07
Identities = 61/265 (23%), Positives = 117/265 (44%), Gaps = 36/265 (13%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS-------- 224
LN + + +V ++G +GSGK+T++ L +G ++ T G D+
Sbjct: 27 LNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISET--GQTIVGDYAIPANLKKIKE 84
Query: 225 -KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTL--TKQQKEKRAIDVINELGLE 281
K L+ +IG V Q FP + + + P L KQ+ K+ +++ + L
Sbjct: 85 VKRLRKEIGLVFQ----FPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLP 140
Query: 282 RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI 341
D + F +SGG+++RV + I ++ + L LDEPT GLD + + + +
Sbjct: 141 E--DYVKRSPF--ELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERL 196
Query: 342 -AEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIGCSPQIAMNP 400
E K ++ H ++ D++I++ +G ++ G E FS+ +I ++P
Sbjct: 197 NKEYKKRIIMVTHN-MDQVLRIADEVIVMHEGKVISIGSPFEI---FSNQELLTKIEIDP 252
Query: 401 AEFL----------LDLANGNLHDV 415
+ +DL N N+ +
Sbjct: 253 PKLYQLMYKLKNKGIDLLNKNIRTI 277
|
Length = 289 |
| >gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 51.1 bits (122), Expect = 2e-07
Identities = 50/190 (26%), Positives = 84/190 (44%), Gaps = 18/190 (9%)
Query: 168 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227
++ +L I+ + G +L L G +G+GKTTLL L++G L+ P G I + K L
Sbjct: 12 HDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAG-LLNPE-KGEILFERQSIKKDL 69
Query: 228 ---KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQ 284
+ ++ FV + P+LT++E Y + ++ LE
Sbjct: 70 CTYQKQLCFVGHRSGINPYLTLRENCLY--------DIHFSPGAVGITELCRLFSLEHLI 121
Query: 285 DTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA 344
D G +S G++++V + + L LDEP LD + L I+ +Q+
Sbjct: 122 DYPCG-----LLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAK 176
Query: 345 GKTVVTTIHQ 354
G V+ T HQ
Sbjct: 177 GGAVLLTSHQ 186
|
Length = 200 |
| >gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 3e-07
Identities = 49/177 (27%), Positives = 75/177 (42%), Gaps = 32/177 (18%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL---- 227
+L+ T ++NPG+ + L+G +G GK+TLL LL + GGS T+ P + L
Sbjct: 16 LLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEI--SADGGSYTF---PGNWQLAWVN 70
Query: 228 -------KSKIGFVTQDDVLFPHLTVKETLTYA-------ALLRLPNTLTKQQK---EKR 270
+ + +V D + L + L A A+ + L R
Sbjct: 71 QETPALPQPALEYVIDGDREYRQLEAQ--LHDANERNDGHAIATIHGKLDAIDAWTIRSR 128
Query: 271 AIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLD 327
A +++ LG Q V SGG R R+ + +I LL LDEPT+ LD
Sbjct: 129 AASLLHGLGFSNEQLERP----VSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLD 181
|
Length = 638 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 53.1 bits (127), Expect = 3e-07
Identities = 57/215 (26%), Positives = 100/215 (46%), Gaps = 33/215 (15%)
Query: 166 SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRL--MEPTVGGSITYNDHPY 223
S K L+ I + G ++A++G +G GKT+L++ + G L E +
Sbjct: 626 SKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETS------------ 673
Query: 224 SKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVI---NELGL 280
S ++ + +V Q +F + TV+E + + + + ++ RAIDV ++L L
Sbjct: 674 SVVIRGSVAYVPQVSWIF-NATVRENILFGSDF-------ESERYWRAIDVTALQHDLDL 725
Query: 281 ERCQD-TMIGGSFVRGV--SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQM 337
+D T IG RGV SGG+++RV + + N + D+P S LD+ A ++
Sbjct: 726 LPGRDLTEIGE---RGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDS 782
Query: 338 LQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKG 372
GKT V +Q D++IL+ +G
Sbjct: 783 CMKDELKGKTRVLVTNQ--LHFLPLMDRIILVSEG 815
|
Length = 1495 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 50.8 bits (121), Expect = 4e-07
Identities = 49/198 (24%), Positives = 99/198 (50%), Gaps = 29/198 (14%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYN----DHPYSKSLK 228
L+ I + G++ ++G G GK++LL + G + T+ G + ++ P ++ +
Sbjct: 17 LSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQ--TLEGKVHWSNKNESEPSFEATR 74
Query: 229 SK----IGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVIN---ELGLE 281
S+ + + Q L + TV+E +T+ + +Q+ K D + ++ L
Sbjct: 75 SRNRYSVAYAAQKPWLL-NATVEENITFGSPF-------NKQRYKAVTDACSLQPDIDLL 126
Query: 282 RCQD-TMIGGSFVRGV--SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQ-- 336
D T IG RG+ SGG+R+R+C+ + N +++FLD+P S LD + ++Q
Sbjct: 127 PFGDQTEIGE---RGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEG 183
Query: 337 MLQDIAEAGKTVVTTIHQ 354
+L+ + + +T+V H+
Sbjct: 184 ILKFLQDDKRTLVLVTHK 201
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 6e-07
Identities = 53/192 (27%), Positives = 97/192 (50%), Gaps = 21/192 (10%)
Query: 174 NGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYN-------DHPYSKS 226
+G+T + GE L ++G SG GK+T + G L++ T G + + ++
Sbjct: 38 DGVTLRLYEGETLGVVGESGCGKSTFARAIIG-LVKAT-DGEVAWLGKDLLGMKDDEWRA 95
Query: 227 LKSKIGFVTQDDV--LFPHLTVKETLTYAALLRL--PNTLTKQQKEKRAIDVINELGLER 282
++S I + QD + L P +T+ E + A LR P L++Q+ + R ++ ++GL
Sbjct: 96 VRSDIQMIFQDPLASLNPRMTIGEII--AEPLRTYHPK-LSRQEVKDRVKAMMLKVGL-- 150
Query: 283 CQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI- 341
+I + SGG+ +R+ I +I+ P L+ DEP S LD + ++V +LQ +
Sbjct: 151 -LPNLIN-RYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQ 208
Query: 342 AEAGKTVVTTIH 353
E G +++ H
Sbjct: 209 REMGLSLIFIAH 220
|
Length = 331 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 47.8 bits (115), Expect = 1e-06
Identities = 17/44 (38%), Positives = 29/44 (65%)
Query: 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQD 340
SGGE+ R+ + ++ NP+LL LDEPT+ LD + + + L++
Sbjct: 72 SGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKE 115
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 1e-06
Identities = 46/166 (27%), Positives = 79/166 (47%), Gaps = 19/166 (11%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS-----KSL 227
L+G +V PG V+AL+G +G+GK+T++ +L+G + GSI Y + S
Sbjct: 20 LSGAALNVYPGRVMALVGENGAGKSTMMKVLTG--IYTRDAGSILYLGKEVTFNGPKSSQ 77
Query: 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNT----LTKQQKEKRAIDVINELGLERC 283
++ IG + Q+ L P LT+ E + L R + ++ A ++ L L
Sbjct: 78 EAGIGIIHQELNLIPQLTIAENIF---LGREFVNRFGRIDWKKMYAEADKLLARLNLRFS 134
Query: 284 QDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDST 329
D ++G +S GE++ V I + ++ +DEPT L T
Sbjct: 135 SDKLVG-----ELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDT 175
|
Length = 501 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 1e-06
Identities = 62/226 (27%), Positives = 102/226 (45%), Gaps = 34/226 (15%)
Query: 168 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGG-----SITY-NDH 221
E K +L ++ SV G++ ++G +GSGK+TLL L + E + G SI Y
Sbjct: 671 EPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQF-EISEGRVWAERSIAYVPQQ 729
Query: 222 PY--SKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG 279
+ + +++ I F ++D V+ + A L +L G
Sbjct: 730 AWIMNATVRGNILFFDEEDAARLADAVRVSQLEADLAQLGG------------------G 771
Query: 280 LERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQ 339
LE T IG V +SGG++ RV + + N + LD+P S LD+ R+V+
Sbjct: 772 LE----TEIGEKGV-NLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECF 826
Query: 340 DIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385
A AGKT V HQ + + D ++ LG G + + G +++ M
Sbjct: 827 LGALAGKTRVLATHQ--VHVVPRADYVVALGDGRVEFSGSSADFMR 870
|
Length = 1560 |
| >gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C | Back alignment and domain information |
|---|
Score = 49.1 bits (117), Expect = 2e-06
Identities = 51/195 (26%), Positives = 95/195 (48%), Gaps = 29/195 (14%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLM----EPTVGGSITYNDHPYSKSL 227
+L I+ S++PG+ + L+G +GSGK+TLL+ RL+ + + G +++N P K
Sbjct: 19 VLENISFSISPGQRVGLLGRTGSGKSTLLSAFL-RLLNTEGDIQIDG-VSWNSVPLQKWR 76
Query: 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQD-- 285
K+ G + Q +F T ++ L P + ++ V E+GL+ +
Sbjct: 77 KA-FGVIPQKVFIFSG-TFRKNLD-------PY---GKWSDEEIWKVAEEVGLKSVIEQF 124
Query: 286 ------TMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQ 339
++ G V +S G ++ +C+ ++ +L LDEP++ LD T I + L+
Sbjct: 125 PGQLDFVLVDGGCV--LSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLK 182
Query: 340 DIAEAGKTVVTTIHQ 354
A A TV+ + H+
Sbjct: 183 Q-AFADCTVILSEHR 196
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 50.2 bits (120), Expect = 3e-06
Identities = 67/237 (28%), Positives = 106/237 (44%), Gaps = 41/237 (17%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS----KSL 227
+L G++ + P E + ++G +GSGK+TLL L R++E GG I N + L
Sbjct: 1325 VLRGVSFRIAPREKVGIVGRTGSGKSTLL-LTFMRMVE-VCGGEIRVNGREIGAYGLREL 1382
Query: 228 KSKIGFVTQDDVLF---------PHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINEL 278
+ + + QD VLF P L +AA L L + E ID
Sbjct: 1383 RRQFSMIPQDPVLFDGTVRQNVDPFLEASSAEVWAA-LELVGLRERVASESEGID----- 1436
Query: 279 GLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPS-LLFLDEPTSGLDSTTAL-RIVQ 336
R + GGS S G+R+ +C+ ++ S + +DE T+ +D AL R +Q
Sbjct: 1437 --SRVLE---GGS---NYSVGQRQLMCMARALLKKGSGFILMDEATANIDP--ALDRQIQ 1486
Query: 337 MLQDIAEAGKTVVTTIHQPSSRLFH---KFDKLILLGKGSLLYFGKASEAMAYFSSI 390
A + TV+T H RL H ++DK+I++ G++ G E + SI
Sbjct: 1487 ATVMSAFSAYTVITIAH----RL-HTVAQYDKIIVMDHGAVAEMGSPRELVMNRQSI 1538
|
Length = 1560 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 3e-06
Identities = 51/217 (23%), Positives = 100/217 (46%), Gaps = 34/217 (15%)
Query: 153 TDVTYKVIL--KGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP 210
+ +VIL + +TS + I + ++ ++ GE+L + G G+ +T ++ L G +
Sbjct: 243 ENKPGEVILEVRNLTSLRQPSIRD-VSFDLHKGEILGIAGLVGAKRTDIVETLFG--IRE 299
Query: 211 TVGGSI-----TYNDHPYSKSLKSKIGFVTQD----------DVLFPHL--TVKETLTYA 253
G+I N+H ++++ VT++ D+ F L ++
Sbjct: 300 KSAGTITLHGKKINNHNANEAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKV 359
Query: 254 ALLRLPNTLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVRGVSGGERKRVCIGNEIII 312
LL N+ K + VI+ + ++ T IG +SGG +++V IG ++
Sbjct: 360 GLLD--NSRMKSDTQW----VIDSMRVKTPGHRTQIGS-----LSGGNQQKVIIGRWLLT 408
Query: 313 NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVV 349
P +L LDEPT G+D I Q++ ++A+ K ++
Sbjct: 409 QPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGII 445
|
Length = 491 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 47.0 bits (111), Expect = 3e-06
Identities = 44/201 (21%), Positives = 69/201 (34%), Gaps = 64/201 (31%)
Query: 182 PGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLF 241
PGEV+ ++GP GSGKTTL L R + P GG I +
Sbjct: 1 PGEVILIVGPPGSGKTTLARAL-ARELGPPGGGVIYIDG--------------------- 38
Query: 242 PHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGER 301
E + L +L + +K + ++ L L +
Sbjct: 39 ------EDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKL--------------- 77
Query: 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQM------LQDIAEAGKTVVTTIHQP 355
P +L LDE TS LD+ ++ + L +E TV+ T +
Sbjct: 78 -----------KPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTNDE 126
Query: 356 ----SSRLFHKFDKLILLGKG 372
+ L +FD+ I+L
Sbjct: 127 KDLGPALLRRRFDRRIVLLLI 147
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 4e-06
Identities = 52/181 (28%), Positives = 93/181 (51%), Gaps = 26/181 (14%)
Query: 158 KVI-LKGMTSS-EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGS 215
KVI + ++ +K +++ ++ + PG ++ ++GP+G+GK+TL +++G E G+
Sbjct: 321 KVIEAENLSKGFGDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITG--QEQPDSGT 378
Query: 216 ITYNDHPYSKSLKSKIGFVTQD-DVLFPHLTVKETLTYAA-LLRLPNTLTKQQKEKRA-I 272
I + K+ +V Q D L P+ TV E ++ +++ L K++ RA +
Sbjct: 379 IKIGE-------TVKLAYVDQSRDALDPNKTVWEEISGGLDIIQ----LGKREVPSRAYV 427
Query: 273 DVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTAL 332
N G + Q +G +SGGER RV + + ++L LDEPT+ LD T L
Sbjct: 428 GRFNFKGSD--QQKKVG-----QLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVET-L 479
Query: 333 R 333
R
Sbjct: 480 R 480
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|184131 PRK13546, PRK13546, teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 4e-06
Identities = 55/220 (25%), Positives = 96/220 (43%), Gaps = 30/220 (13%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIG 232
L+ I+ G+V+ L+G +GSGK+TL N++ G L PTVG + +
Sbjct: 40 LDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSL-SPTVGKVDRNGE----------VS 88
Query: 233 FVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAI--DVI--NELGLERCQDTMI 288
+ L LT E + + L + ++KE +A+ +I +ELG Q
Sbjct: 89 VIAISAGLSGQLTGIENIEFKMLC-----MGFKRKEIKAMTPKIIEFSELGEFIYQP--- 140
Query: 289 GGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTV 348
V+ S G R ++ I +NP +L +DE S D T A + + + + E KT+
Sbjct: 141 ----VKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTI 196
Query: 349 VTTIHQPSSRLFHKF-DKLILLGKGSLLYFGKASEAMAYF 387
H + +F K+ + G L +G+ + + +
Sbjct: 197 FFVSH--NLGQVRQFCTKIAWIEGGKLKDYGELDDVLPKY 234
|
Length = 264 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 49.6 bits (118), Expect = 4e-06
Identities = 56/245 (22%), Positives = 101/245 (41%), Gaps = 42/245 (17%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIG 232
LNGIT S+ G ++A++G G GK++LL+ L + + V G + +K +
Sbjct: 654 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDK--VEGHVH---------MKGSVA 702
Query: 233 FVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQD-TMIGGS 291
+V Q + +++E + + L Q+ A ++ +L + D T IG
Sbjct: 703 YVPQ-QAWIQNDSLRENILFGKALNEK----YYQQVLEACALLPDLEILPSGDRTEIGEK 757
Query: 292 FVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQ-------MLQDIAEA 344
V +SGG+++RV + + N + D+P S +D+ I + +L
Sbjct: 758 GV-NLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVL-----K 811
Query: 345 GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIGCSPQIAMNPAEFL 404
KT + H S + D +I++ G + G E + + AEFL
Sbjct: 812 NKTRILVTHGIS--YLPQVDVIIVMSGGKISEMGSYQELLQRDGAF----------AEFL 859
Query: 405 LDLAN 409
A
Sbjct: 860 RTYAP 864
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 48.9 bits (116), Expect = 8e-06
Identities = 30/87 (34%), Positives = 49/87 (56%), Gaps = 6/87 (6%)
Query: 171 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS----KS 226
+I + ++ G+ A +G SG GK+T+L L+ RL +PT G I + H K
Sbjct: 399 EIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIE-RLYDPTEGDIIINDSHNLKDINLKW 457
Query: 227 LKSKIGFVTQDDVLFPHLTVKETLTYA 253
+SKIG V+QD +LF + ++K + Y+
Sbjct: 458 WRSKIGVVSQDPLLFSN-SIKNNIKYS 483
|
Length = 1466 |
| >gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 8e-06
Identities = 57/223 (25%), Positives = 93/223 (41%), Gaps = 39/223 (17%)
Query: 150 LKFTDVTYKVILKGMTSSEEKDI------------LNGITGSVNPGEVLALMGPSGSGKT 197
+KF VT K + + KD+ LN I+ V GE++ ++G +GSGK+
Sbjct: 5 VKFEHVTKKYKMYNKPFDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKS 64
Query: 198 TLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLR 257
TL NL++G M P G + +K + L LT E + L+
Sbjct: 65 TLSNLIAGVTM-PNKG----------TVDIKGSAALIAISSGLNGQLTGIENIELKGLMM 113
Query: 258 LPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSF----VRGVSGGERKRVCIGNEIIIN 313
LTK++ ++ ++I + G F V+ S G + R+ + IN
Sbjct: 114 ---GLTKEKIKEIIPEIIEFADI---------GKFIYQPVKTYSSGMKSRLGFAISVHIN 161
Query: 314 PSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPS 356
P +L +DE S D T + + + + E GKT+ H S
Sbjct: 162 PDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLS 204
|
Length = 549 |
| >gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.9 bits (111), Expect = 1e-05
Identities = 53/234 (22%), Positives = 95/234 (40%), Gaps = 26/234 (11%)
Query: 180 VNPGEVLALMGPSGSGKTTLL-------NLLSGRLMEPTVG--GSITYNDHPYSKSLKSK 230
+ E+ +GPSG GK+T+L +L+ G E V G Y ++
Sbjct: 31 IRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRY 90
Query: 231 IGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGG 290
IG V Q F +++ + + + LRL N ++ + + +D +
Sbjct: 91 IGMVFQQPNPFS-MSIFDNVAFG--LRL-NRYKGDLGDRVKHALQGAALWDEVKDKLKVS 146
Query: 291 SFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVT 350
+SGG+++R+CI I P +L LDEP S LD R+ +++ ++ + +
Sbjct: 147 GL--SLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALV 204
Query: 351 TIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA--MAYFSSIGCSPQIAMNPAE 402
T H + I + + + S+ Y +G + QI NP E
Sbjct: 205 T---------HNMQQAIRVADTTAFFSVDISQGTRTGYLVEMGPTAQIFQNPRE 249
|
Length = 261 |
| >gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 1e-05
Identities = 49/212 (23%), Positives = 83/212 (39%), Gaps = 56/212 (26%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLN---LLSGRLMEPTVGGSITYNDHPYSKSLKS 229
L + S+ ++ + G SGSGK+TL+N SG+ K ++
Sbjct: 11 LQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLYASGKAR---------LISFL-PKFSRN 60
Query: 230 KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIG 289
K+ F+ Q L + L Y L + +TL
Sbjct: 61 KLIFIDQLQFL-----IDVGLGYLTLGQKLSTL--------------------------- 88
Query: 290 GSFVRGVSGGERKRVCIGNEIIINP--SLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKT 347
SGGE +RV + +E+ P +L LDEP++GL +++++++ + + G T
Sbjct: 89 -------SGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNT 141
Query: 348 VVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379
V+ H + D +I G GS GK
Sbjct: 142 VILIEHNL--DVLSSADWIIDFGPGSGKSGGK 171
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176 |
| >gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 1e-05
Identities = 45/195 (23%), Positives = 86/195 (44%), Gaps = 25/195 (12%)
Query: 161 LKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKT-TLLNLLSGRLMEPTV---GGSI 216
L+ + + +++G++ ++ G VLAL+G SGSGK+ T L ++ V G +
Sbjct: 7 LRNIALQAAQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALG--ILPAGVRQTAGRV 64
Query: 217 TYNDHPYS-KSLKSK-IGFVTQD--DVLFPHLT----VKETLTYAALLRLPNTLTKQQKE 268
+ P + +L+ + I + Q+ P T +ET AL + + +
Sbjct: 65 LLDGKPVAPCALRGRKIATIMQNPRSAFNPLHTMHTHARETC--LALGKPAD-------D 115
Query: 269 KRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDS 328
+ +GLE + + +SGG +R+ I ++ + DEPT+ LD
Sbjct: 116 ATLTAALEAVGLE--NAARVLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDV 173
Query: 329 TTALRIVQMLQDIAE 343
RI+ +L+ I +
Sbjct: 174 VAQARILDLLESIVQ 188
|
Length = 254 |
| >gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 2e-05
Identities = 56/210 (26%), Positives = 88/210 (41%), Gaps = 30/210 (14%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS-KSL---K 228
+ I ++ GE++ L+G +GSGK+TL LL+G L +P G I + P S + L +
Sbjct: 339 VGPINLTIKRGELVFLIGGNGSGKSTLAMLLTG-LYQPQSGE-ILLDGKPVSAEQLEDYR 396
Query: 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMI 288
V D LF L E A+ + L Q+ E +N
Sbjct: 397 KLFSAVFSDYHLFDQLLGPE--GKASPQLIEKWL--QRLELAHKTSLN------------ 440
Query: 289 GGSFVR-GVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIV---QMLQDIAEA 344
G F +S G++KR+ + ++ +L LDE + D A R +L + E
Sbjct: 441 DGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWAA--DQDPAFRREFYQVLLPLLKEQ 498
Query: 345 GKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374
GKT+ H F D+L+ + G L
Sbjct: 499 GKTIFAISH--DDHYFIHADRLLEMRNGQL 526
|
Length = 546 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 4e-05
Identities = 44/185 (23%), Positives = 85/185 (45%), Gaps = 23/185 (12%)
Query: 179 SVNPGEVLALMGPSGSGKTTLLNLL----SGRLMEPTVGGSITYNDHPYS-----KSLKS 229
S+ GE+L + G G+G+T L+ L GR G I + P +++
Sbjct: 284 SLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWE-----GEIFIDGKPVKIRNPQQAIAQ 338
Query: 230 KIGFVTQD---DVLFPHLTVKETLTYAALLRL--PNTLTKQQKEKRAIDVINELGLERCQ 284
I V +D D + P + V + +T AAL R + + + K ++ I L + +
Sbjct: 339 GIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKV-KTA 397
Query: 285 DTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA 344
+ + +SGG +++ + +++NP +L LDEPT G+D I +++ + +
Sbjct: 398 SPELA---IARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQ 454
Query: 345 GKTVV 349
G ++
Sbjct: 455 GVAII 459
|
Length = 506 |
| >gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter | Back alignment and domain information |
|---|
Score = 45.3 bits (107), Expect = 6e-05
Identities = 45/208 (21%), Positives = 81/208 (38%), Gaps = 21/208 (10%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIG 232
L I + G+++ ++G +G GK+TL L G L P G I + S
Sbjct: 358 LGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCG-LYIPQ-EGEILLDGAAVSAD------ 409
Query: 233 FVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKE-KRAIDVINELGLERCQDTMIGG- 290
++DD + L + L + A + L + GG
Sbjct: 410 --SRDD--YRDLFSAIFADFHLFDDLIGPDEGEHASLDNAQQYLQRLEIADKVKIEDGGF 465
Query: 291 SFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIV---QMLQDIAEAGKT 347
S +S G++KR+ + + + +L DE + D A + ++L D+ GKT
Sbjct: 466 STTTALSTGQQKRLALICAWLEDRPILLFDEWAA--DQDPAFKRFFYEELLPDLKRQGKT 523
Query: 348 VVTTIHQPSSRLFHKFDKLILLGKGSLL 375
++ H + F D++I L G ++
Sbjct: 524 IIIISH--DDQYFELADQIIKLAAGCIV 549
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake [Transport and binding proteins, Amino acids, peptides and amines, Transport and binding proteins, Other]. Length = 555 |
| >gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter proteins | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 7e-05
Identities = 33/195 (16%), Positives = 54/195 (27%), Gaps = 62/195 (31%)
Query: 181 NPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVL 240
G + + GP+GSGK+T+L
Sbjct: 19 GEGSLTIITGPNGSGKSTIL---------------------------------------- 38
Query: 241 FPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGE 300
+ + A T + + G + +SGGE
Sbjct: 39 -------DAIGLALGGAQSATRRRSG---------VKAGCIVAAVSAELIFTRLQLSGGE 82
Query: 301 RKRVCI----GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPS 356
++ + + L LDE GLD + + + + G V+ H P
Sbjct: 83 KELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLP- 141
Query: 357 SRLFHKFDKLILLGK 371
L DKLI + K
Sbjct: 142 -ELAELADKLIHIKK 155
|
ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. Length = 162 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 45.3 bits (107), Expect = 8e-05
Identities = 53/209 (25%), Positives = 99/209 (47%), Gaps = 32/209 (15%)
Query: 161 LKGMT---SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLM----EPTVG 213
++G+T + + +L ++ SV G+ + L+G +GSGK+TLL+ L RL+ E +
Sbjct: 1220 VQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALL-RLLSTEGEIQID 1278
Query: 214 GSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAID 273
G +++N K+ G + Q +F K Y Q ++
Sbjct: 1279 G-VSWNSVTLQTWRKA-FGVIPQKVFIFSGTFRKNLDPYE-----------QWSDEEIWK 1325
Query: 274 VINELGL----ERCQD----TMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSG 325
V E+GL E+ D ++ G +V +S G ++ +C+ I+ +L LDEP++
Sbjct: 1326 VAEEVGLKSVIEQFPDKLDFVLVDGGYV--LSNGHKQLMCLARSILSKAKILLLDEPSAH 1383
Query: 326 LDSTTALRIVQMLQDIAEAGKTVVTTIHQ 354
LD T L+I++ + + TV+ + H+
Sbjct: 1384 LDPVT-LQIIRKTLKQSFSNCTVILSEHR 1411
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|185049 PRK15093, PRK15093, antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 2e-04
Identities = 25/86 (29%), Positives = 50/86 (58%), Gaps = 2/86 (2%)
Query: 267 KEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGL 326
+++RAI++++ +G++ +D M SF ++ GE ++V I + P LL DEPT+ +
Sbjct: 132 RKRRAIELLHRVGIKDHKDAM--RSFPYELTEGECQKVMIAIALANQPRLLIADEPTNAM 189
Query: 327 DSTTALRIVQMLQDIAEAGKTVVTTI 352
+ TT +I ++L + + T + I
Sbjct: 190 EPTTQAQIFRLLTRLNQNNNTTILLI 215
|
Length = 330 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 43.4 bits (102), Expect = 3e-04
Identities = 58/243 (23%), Positives = 111/243 (45%), Gaps = 26/243 (10%)
Query: 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME 209
+KF DV + +L+G++ V+P E + ++G +G+GK+++LN L R++E
Sbjct: 1235 IKFEDVHLRY------RPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALF-RIVE 1287
Query: 210 PTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQ 265
G I +D +K L+ + + Q VLF TV+ + + + L +
Sbjct: 1288 -LEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSG-TVRFNIDPFSEHNDAD-LWEA 1344
Query: 266 QKEKRAIDVI--NELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPT 323
+ DVI N GL+ + + G +F S G+R+ + + ++ +L LDE T
Sbjct: 1345 LERAHIKDVIDRNPFGLD-AEVSEGGENF----SVGQRQLLSLARALLRRSKILVLDEAT 1399
Query: 324 SGLDSTTALRIVQMLQ-DIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382
+ +D +R ++Q I E K+ + DK+++L G +L + E
Sbjct: 1400 ASVD----VRTDSLIQRTIREEFKSCTMLVIAHRLNTIIDCDKILVLSSGQVLEYDSPQE 1455
Query: 383 AMA 385
++
Sbjct: 1456 LLS 1458
|
Length = 1495 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 3e-04
Identities = 18/46 (39%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 168 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVG 213
+ K ++ + V G+ +AL+GP+G GKTTLL L+ G+L + G
Sbjct: 330 DGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQL-QADSG 374
|
Length = 635 |
| >gnl|CDD|206747 cd01854, YjeQ_EngC, Ribosomal interacting GTPase YjeQ/EngC, a circularly permuted subfamily of the Ras GTPases | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 0.001
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 183 GEVLALMGPSGSGKTTLLNLLSGRL 207
G+ L+G SG GK+TLLN L L
Sbjct: 85 GKTSVLVGQSGVGKSTLLNALLPEL 109
|
YjeQ (YloQ in Bacillus subtilis) is a ribosomal small subunit-dependent GTPase; hence also known as RsgA. YjeQ is a late-stage ribosomal biogenesis factor involved in the 30S subunit maturation, and it represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. Length = 211 |
| >gnl|CDD|217416 pfam03193, DUF258, Protein of unknown function, DUF258 | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 0.001
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 183 GEVLALMGPSGSGKTTLLNLLSGRL 207
G+ L G SG GK+TLLN L L
Sbjct: 35 GKTSVLAGQSGVGKSTLLNALLPEL 59
|
Length = 161 |
| >gnl|CDD|222036 pfam13304, AAA_21, AAA domain | Back alignment and domain information |
|---|
Score = 40.1 bits (93), Expect = 0.001
Identities = 18/68 (26%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
Query: 292 FVRGVSGGERKRVCIGNEII---INPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTV 348
++G+S G ++ + + ++ SLL +DEP +GL ++V++L++++E G +
Sbjct: 186 LIKGISDGTKRLLALLLALLSALPKGSLLLIDEPENGLHPKLLRKLVELLKELSEKGAQL 245
Query: 349 VTTIHQPS 356
+ T H P
Sbjct: 246 IFTTHSPL 253
|
Length = 256 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 0.002
Identities = 41/186 (22%), Positives = 85/186 (45%), Gaps = 19/186 (10%)
Query: 176 ITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS-----KSLKSK 230
I+ SV GE++ L G G+G++ L+ LL G G + + P ++++
Sbjct: 272 ISFSVRAGEIVGLFGLVGAGRSELMKLLYG--ATRRTAGQVYLDGKPIDIRSPRDAIRAG 329
Query: 231 IGFVTQD---DVLFPHLTVKETLTYAA---LLRLPNTLTKQQKEKRAIDVINELGLE-RC 283
I +D + + P +V + + +A LR + + + + A I L ++
Sbjct: 330 IMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPS 389
Query: 284 QDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE 343
++ +I +SGG +++ +G + + ++ LDEPT G+D I ++ ++A
Sbjct: 390 REQLI-----MNLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAA 444
Query: 344 AGKTVV 349
G V+
Sbjct: 445 QGVAVL 450
|
Length = 501 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 40.5 bits (96), Expect = 0.002
Identities = 47/178 (26%), Positives = 75/178 (42%), Gaps = 64/178 (35%)
Query: 179 SVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQD- 237
S+ PG ++ ++GP+G+GK+TL +++G+ E G+I + K+ +V Q
Sbjct: 346 SLPPGGIVGIIGPNGAGKSTLFKMITGQ--EQPDSGTIKIGE-------TVKLAYVDQSR 396
Query: 238 DVLFPHLTVKETLTYAA-LLRLPNTLTK--------------QQKEKRAIDVINELGLER 282
D L P+ TV E ++ ++++ N QQK
Sbjct: 397 DALDPNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKGGDQQK--------------- 441
Query: 283 CQDTMIGGSFVRGVSGGERKRVCI-------GNEIIINPSLLFLDEPTSGLDSTTALR 333
V +SGGER R+ + GN +L LDEPT+ LD T LR
Sbjct: 442 ---------KVGVLSGGERNRLHLAKTLKQGGN-------VLLLDEPTNDLDVET-LR 482
|
Length = 556 |
| >gnl|CDD|213238 cd03271, ABC_UvrA_II, ATP-binding cassette domain II of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 0.002
Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 5/62 (8%)
Query: 297 SGGERKRVCIGNEIIINPS----LLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTI 352
SGGE +R+ + E+ S L LDEPT+GL +++++LQ + + G TVV
Sbjct: 171 SGGEAQRIKLAKELS-KRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIE 229
Query: 353 HQ 354
H
Sbjct: 230 HN 231
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 261 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 0.003
Identities = 23/74 (31%), Positives = 43/74 (58%), Gaps = 6/74 (8%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SL 227
+L+G++ ++P E + ++G +G+GK+++LN L R++E G I + SK L
Sbjct: 1254 VLHGLSFEISPSEKVGIVGRTGAGKSSMLNALF-RIVELE-RGRILIDGCDISKFGLMDL 1311
Query: 228 KSKIGFVTQDDVLF 241
+ +G + Q VLF
Sbjct: 1312 RKVLGIIPQAPVLF 1325
|
Length = 1622 |
| >gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 0.003
Identities = 41/156 (26%), Positives = 68/156 (43%), Gaps = 26/156 (16%)
Query: 186 LALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLT 245
+A++GP+G GK+T+L L+SG L +P+ G +S K ++ +Q V L+
Sbjct: 538 IAMVGPNGIGKSTILKLISGEL-QPSSGTVF--------RSAKVRMAVFSQHHVDGLDLS 588
Query: 246 VKETLTYAALLRLPNTLTKQQKEKR---AIDVINELGLERCQDTMIGGSFVRGVSGGERK 302
L P +QK + + V L L+ + +SGG++
Sbjct: 589 SNPLLYMMRC--FPGVP--EQKLRAHLGSFGVTGNLALQP----------MYTLSGGQKS 634
Query: 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQML 338
RV P +L LDEP++ LD ++Q L
Sbjct: 635 RVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGL 670
|
Length = 718 |
| >gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 38.3 bits (89), Expect = 0.003
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 296 VSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAG-KTVVTTIH 353
+SGGE +RV I ++ N + DEP++ LD L + ++ ++E G KT + H
Sbjct: 72 LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEH 130
|
The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 177 |
| >gnl|CDD|234988 PRK01889, PRK01889, GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 0.003
Identities = 15/42 (35%), Positives = 27/42 (64%)
Query: 165 TSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGR 206
S+ + + L+ + ++ G+ +AL+G SG GK+TL+N L G
Sbjct: 177 VSALDGEGLDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGE 218
|
Length = 356 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 39.9 bits (93), Expect = 0.004
Identities = 60/229 (26%), Positives = 103/229 (44%), Gaps = 36/229 (15%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTL-LNLLSGRLMEPTVGGSITYNDHPYSK----S 226
+L I +++ GE + ++G +G+GK++L L L R+ E + G I + +K
Sbjct: 1301 VLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLF--RINE-SAEGEIIIDGLNIAKIGLHD 1357
Query: 227 LKSKIGFVTQDDVLF---------PHLTVKETLTYAAL-LRLPNTLTKQQKEKRAIDVIN 276
L+ KI + QD VLF P + + AL L T +K
Sbjct: 1358 LRFKITIIPQDPVLFSGSLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDK------- 1410
Query: 277 ELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQ 336
L E C + GG +S G+R+ VC+ ++ +L LDE T+ +D T I
Sbjct: 1411 -LDHE-CAE---GG---ENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQS 1462
Query: 337 MLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385
++ E TV+T H+ ++ + + ++I+L KG + FG S +
Sbjct: 1463 TIRTQFEDC-TVLTIAHRLNTIM--DYTRVIVLDKGEVAEFGAPSNLLQ 1508
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 562 | |||
| KOG0061 | 613 | consensus Transporter, ABC superfamily (Breast can | 100.0 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 100.0 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-li | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 100.0 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 100.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 100.0 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 100.0 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| PRK09580 | 248 | sufC cysteine desulfurase ATPase component; Review | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| COG4598 | 256 | HisP ABC-type histidine transport system, ATPase c | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 100.0 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 100.0 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 100.0 | |
| cd03217 | 200 | ABC_FeS_Assembly ABC-type transport system involve | 100.0 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 100.0 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 100.0 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Review | 100.0 | |
| cd03220 | 224 | ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo | 100.0 | |
| COG4161 | 242 | ArtP ABC-type arginine transport system, ATPase co | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 100.0 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 100.0 | |
| PRK13546 | 264 | teichoic acids export protein ATP-binding subunit; | 100.0 | |
| TIGR01189 | 198 | ccmA heme ABC exporter, ATP-binding protein CcmA. | 100.0 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 100.0 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 100.0 | |
| PRK13540 | 200 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| TIGR02324 | 224 | CP_lyasePhnL phosphonate C-P lyase system protein | 100.0 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| cd03215 | 182 | ABC_Carb_Monos_II This family represents domain II | 100.0 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| PRK13539 | 207 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| TIGR01166 | 190 | cbiO cobalt transport protein ATP-binding subunit. | 100.0 | |
| PRK13545 | 549 | tagH teichoic acids export protein ATP-binding sub | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| COG4604 | 252 | CeuD ABC-type enterochelin transport system, ATPas | 100.0 | |
| TIGR03771 | 223 | anch_rpt_ABC anchored repeat-type ABC transporter, | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| cd03214 | 180 | ABC_Iron-Siderophores_B12_Hemin ABC transporters, | 100.0 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 100.0 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| TIGR01187 | 325 | potA spermidine/putrescine ABC transporter ATP-bin | 100.0 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| COG4148 | 352 | ModC ABC-type molybdate transport system, ATPase c | 100.0 | |
| cd03228 | 171 | ABCC_MRP_Like The MRP (Mutidrug Resistance Protein | 100.0 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 100.0 | |
| PRK13541 | 195 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| cd03216 | 163 | ABC_Carb_Monos_I This family represents the domain | 100.0 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 100.0 | |
| PRK10535 | 648 | macrolide transporter ATP-binding /permease protei | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass | 100.0 | |
| COG4619 | 223 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| COG0396 | 251 | sufC Cysteine desulfurase activator ATPase [Posttr | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 100.0 | |
| PRK15177 | 213 | Vi polysaccharide export ATP-binding protein VexC; | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| COG1119 | 257 | ModF ABC-type molybdenum transport system, ATPase | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| cd03237 | 246 | ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o | 100.0 | |
| COG4608 | 268 | AppF ABC-type oligopeptide transport system, ATPas | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| COG4674 | 249 | Uncharacterized ABC-type transport system, ATPase | 100.0 | |
| COG4586 | 325 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| cd03236 | 255 | ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o | 100.0 | |
| COG1101 | 263 | PhnK ABC-type uncharacterized transport system, AT | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| cd03221 | 144 | ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is | 100.0 | |
| COG1134 | 249 | TagH ABC-type polysaccharide/polyol phosphate tran | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| COG4136 | 213 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| cd03238 | 176 | ABC_UvrA The excision repair protein UvrA; Nucleot | 100.0 | |
| cd03222 | 177 | ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| COG4167 | 267 | SapF ABC-type antimicrobial peptide transport syst | 100.0 | |
| KOG0059 | 885 | consensus Lipid exporter ABCA1 and related protein | 100.0 | |
| cd00267 | 157 | ABC_ATPase ABC (ATP-binding cassette) transporter | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 100.0 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| COG4107 | 258 | PhnK ABC-type phosphonate transport system, ATPase | 100.0 | |
| COG4133 | 209 | CcmA ABC-type transport system involved in cytochr | 100.0 | |
| cd03270 | 226 | ABC_UvrA_I The excision repair protein UvrA domain | 99.98 | |
| COG4778 | 235 | PhnL ABC-type phosphonate transport system, ATPase | 99.97 | |
| PF00005 | 137 | ABC_tran: ABC transporter This structure is on hol | 99.97 | |
| cd03271 | 261 | ABC_UvrA_II The excision repair protein UvrA domai | 99.97 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 99.97 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 99.96 | |
| cd03278 | 197 | ABC_SMC_barmotin Barmotin is a tight junction-asso | 99.96 | |
| COG4138 | 248 | BtuD ABC-type cobalamin transport system, ATPase c | 99.95 | |
| cd03274 | 212 | ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein | 99.95 | |
| cd03272 | 243 | ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein | 99.95 | |
| cd03279 | 213 | ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex | 99.95 | |
| cd03273 | 251 | ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein | 99.94 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 99.94 | |
| cd03240 | 204 | ABC_Rad50 The catalytic domains of Rad50 are simil | 99.94 | |
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 99.94 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 99.94 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 99.94 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 99.93 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 99.92 | |
| COG4170 | 330 | SapD ABC-type antimicrobial peptide transport syst | 99.92 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 99.92 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 99.91 | |
| cd03276 | 198 | ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein | 99.9 | |
| KOG0060 | 659 | consensus Long-chain acyl-CoA transporter, ABC sup | 99.89 | |
| cd03275 | 247 | ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein | 99.89 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 99.89 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 99.88 | |
| KOG2355 | 291 | consensus Predicted ABC-type transport, ATPase com | 99.87 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 99.86 | |
| cd03277 | 213 | ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC protein | 99.86 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 99.85 | |
| cd03280 | 200 | ABC_MutS2 MutS2 homologs in bacteria and eukaryote | 99.84 | |
| cd03239 | 178 | ABC_SMC_head The structural maintenance of chromos | 99.83 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 99.82 | |
| cd03283 | 199 | ABC_MutS-like MutS-like homolog in eukaryotes. The | 99.81 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 99.81 | |
| KOG0064 | 728 | consensus Peroxisomal long-chain acyl-CoA transpor | 99.8 | |
| COG0178 | 935 | UvrA Excinuclease ATPase subunit [DNA replication, | 99.8 | |
| cd03285 | 222 | ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS | 99.8 | |
| cd03241 | 276 | ABC_RecN RecN ATPase involved in DNA repair; ABC ( | 99.8 | |
| COG2401 | 593 | ABC-type ATPase fused to a predicted acetyltransfe | 99.79 | |
| cd03227 | 162 | ABC_Class2 ABC-type Class 2 contains systems invol | 99.78 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 99.75 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 99.75 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 99.74 | |
| cd03242 | 270 | ABC_RecF RecF is a recombinational DNA repair ATPa | 99.74 | |
| cd03243 | 202 | ABC_MutS_homologs The MutS protein initiates DNA m | 99.73 | |
| cd03282 | 204 | ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS | 99.67 | |
| cd03284 | 216 | ABC_MutS1 MutS1 homolog in eukaryotes. The MutS pr | 99.66 | |
| TIGR02858 | 270 | spore_III_AA stage III sporulation protein AA. Mem | 99.61 | |
| KOG0063 | 592 | consensus RNAse L inhibitor, ABC superfamily [RNA | 99.6 | |
| PRK00064 | 361 | recF recombination protein F; Reviewed | 99.52 | |
| smart00534 | 185 | MUTSac ATPase domain of DNA mismatch repair MUTS f | 99.5 | |
| cd00820 | 107 | PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC | 99.47 | |
| PF02463 | 220 | SMC_N: RecF/RecN/SMC N terminal domain; InterPro: | 99.44 | |
| TIGR01069 | 771 | mutS2 MutS2 family protein. Function of MutS2 is u | 99.44 | |
| cd03281 | 213 | ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS | 99.43 | |
| cd01128 | 249 | rho_factor Transcription termination factor rho is | 99.42 | |
| PTZ00132 | 215 | GTP-binding nuclear protein Ran; Provisional | 99.37 | |
| PRK07721 | 438 | fliI flagellum-specific ATP synthase; Validated | 99.35 | |
| TIGR00634 | 563 | recN DNA repair protein RecN. All proteins in this | 99.33 | |
| cd03287 | 222 | ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS | 99.32 | |
| TIGR00618 | 1042 | sbcc exonuclease SbcC. This family is based on the | 99.3 | |
| PRK10869 | 553 | recombination and repair protein; Provisional | 99.29 | |
| PHA02562 | 562 | 46 endonuclease subunit; Provisional | 99.29 | |
| KOG0063 | 592 | consensus RNAse L inhibitor, ABC superfamily [RNA | 99.28 | |
| PRK00409 | 782 | recombination and DNA strand exchange inhibitor pr | 99.28 | |
| COG0178 | 935 | UvrA Excinuclease ATPase subunit [DNA replication, | 99.25 | |
| PF13304 | 303 | AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T | 99.19 | |
| cd01124 | 187 | KaiC KaiC is a circadian clock protein primarily f | 99.18 | |
| cd03286 | 218 | ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS | 99.17 | |
| PRK08533 | 230 | flagellar accessory protein FlaH; Reviewed | 99.17 | |
| PRK03918 | 880 | chromosome segregation protein; Provisional | 99.16 | |
| PRK13695 | 174 | putative NTPase; Provisional | 99.15 | |
| TIGR00606 | 1311 | rad50 rad50. This family is based on the phylogeno | 99.13 | |
| PRK10246 | 1047 | exonuclease subunit SbcC; Provisional | 99.12 | |
| PRK13830 | 818 | conjugal transfer protein TrbE; Provisional | 99.1 | |
| TIGR02788 | 308 | VirB11 P-type DNA transfer ATPase VirB11. The VirB | 99.07 | |
| PRK01156 | 895 | chromosome segregation protein; Provisional | 99.04 | |
| cd01120 | 165 | RecA-like_NTPases RecA-like NTPases. This family i | 99.03 | |
| COG3910 | 233 | Predicted ATPase [General function prediction only | 99.03 | |
| TIGR02168 | 1179 | SMC_prok_B chromosome segregation protein SMC, com | 98.98 | |
| PRK06793 | 432 | fliI flagellum-specific ATP synthase; Validated | 98.98 | |
| cd01131 | 198 | PilT Pilus retraction ATPase PilT. PilT is a nucle | 98.95 | |
| PRK06067 | 234 | flagellar accessory protein FlaH; Validated | 98.89 | |
| PRK02224 | 880 | chromosome segregation protein; Provisional | 98.87 | |
| TIGR02169 | 1164 | SMC_prok_A chromosome segregation protein SMC, pri | 98.86 | |
| PRK06995 | 484 | flhF flagellar biosynthesis regulator FlhF; Valida | 98.84 | |
| cd01125 | 239 | repA Hexameric Replicative Helicase RepA. RepA is | 98.81 | |
| TIGR03238 | 504 | dnd_assoc_3 dnd system-associated protein 3. cereu | 98.79 | |
| smart00382 | 148 | AAA ATPases associated with a variety of cellular | 98.78 | |
| TIGR01420 | 343 | pilT_fam pilus retraction protein PilT. This model | 98.65 | |
| PRK13891 | 852 | conjugal transfer protein TrbE; Provisional | 98.62 | |
| TIGR00611 | 365 | recf recF protein. All proteins in this family for | 98.59 | |
| TIGR01026 | 440 | fliI_yscN ATPase FliI/YscN family. This family of | 98.58 | |
| TIGR03881 | 229 | KaiC_arch_4 KaiC domain protein, PAE1156 family. M | 98.56 | |
| PRK07196 | 434 | fliI flagellum-specific ATP synthase; Validated | 98.56 | |
| cd01130 | 186 | VirB11-like_ATPase Type IV secretory pathway compo | 98.55 | |
| TIGR02655 | 484 | circ_KaiC circadian clock protein KaiC. Members of | 98.55 | |
| COG0419 | 908 | SbcC ATPase involved in DNA repair [DNA replicatio | 98.54 | |
| PRK14079 | 349 | recF recombination protein F; Provisional | 98.54 | |
| cd02023 | 198 | UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1. | 98.46 | |
| PRK06002 | 450 | fliI flagellum-specific ATP synthase; Validated | 98.41 | |
| PRK05399 | 854 | DNA mismatch repair protein MutS; Provisional | 98.39 | |
| TIGR02680 | 1353 | conserved hypothetical protein TIGR02680. Members | 98.37 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 98.33 | |
| PRK09825 | 176 | idnK D-gluconate kinase; Provisional | 98.31 | |
| PRK13873 | 811 | conjugal transfer ATPase TrbE; Provisional | 98.25 | |
| PRK13898 | 800 | type IV secretion system ATPase VirB4; Provisional | 98.22 | |
| cd01122 | 271 | GP4d_helicase GP4d_helicase is a homohexameric 5'- | 98.17 | |
| PRK06315 | 442 | type III secretion system ATPase; Provisional | 98.13 | |
| TIGR00767 | 415 | rho transcription termination factor Rho. Members | 98.12 | |
| cd00009 | 151 | AAA The AAA+ (ATPases Associated with a wide varie | 98.11 | |
| PF09818 | 448 | ABC_ATPase: Predicted ATPase of the ABC class; Int | 98.09 | |
| PF13555 | 62 | AAA_29: P-loop containing region of AAA domain | 98.07 | |
| PRK09270 | 229 | nucleoside triphosphate hydrolase domain-containin | 98.07 | |
| TIGR00416 | 454 | sms DNA repair protein RadA. The gene protuct code | 98.06 | |
| PRK01889 | 356 | GTPase RsgA; Reviewed | 98.05 | |
| PRK03846 | 198 | adenylylsulfate kinase; Provisional | 98.05 | |
| PF13558 | 90 | SbcCD_C: Putative exonuclease SbcCD, C subunit; PD | 98.02 | |
| TIGR00235 | 207 | udk uridine kinase. Model contains a number of lon | 98.01 | |
| cd01876 | 170 | YihA_EngB The YihA (EngB) subfamily. This subfamil | 98.01 | |
| PRK10078 | 186 | ribose 1,5-bisphosphokinase; Provisional | 98.0 | |
| TIGR00554 | 290 | panK_bact pantothenate kinase, bacterial type. Sho | 97.98 | |
| PRK00454 | 196 | engB GTP-binding protein YsxC; Reviewed | 97.98 | |
| PRK10416 | 318 | signal recognition particle-docking protein FtsY; | 97.97 | |
| TIGR00152 | 188 | dephospho-CoA kinase. This model produces scores i | 97.96 | |
| TIGR02903 | 615 | spore_lon_C ATP-dependent protease, Lon family. Me | 97.93 | |
| PRK08149 | 428 | ATP synthase SpaL; Validated | 97.93 | |
| cd01121 | 372 | Sms Sms (bacterial radA) DNA repair protein. This | 97.89 | |
| TIGR02524 | 358 | dot_icm_DotB Dot/Icm secretion system ATPase DotB. | 97.87 | |
| PRK13764 | 602 | ATPase; Provisional | 97.87 | |
| TIGR02322 | 179 | phosphon_PhnN phosphonate metabolism protein/1,5-b | 97.86 | |
| PLN02318 | 656 | phosphoribulokinase/uridine kinase | 97.83 |
| >KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-67 Score=590.59 Aligned_cols=381 Identities=44% Similarity=0.726 Sum_probs=313.6
Q ss_pred ceeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC-CCccEEEECCEeCC-
Q 008534 147 PIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP-TVGGSITYNDHPYS- 224 (562)
Q Consensus 147 ~~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~-~~~G~I~i~G~~~~- 224 (562)
+..+.|+|+++..+.+. ...+.+|+|||++++|||++||||||||||||||++|+|+.... ..+|+|++||++..
T Consensus 23 ~~~~~~~~~~~~~~~~~---~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~ 99 (613)
T KOG0061|consen 23 PVKLSFRNLTLSSKEKS---KKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDS 99 (613)
T ss_pred cceeEEEEEEEEecCCC---CccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCch
Confidence 45799999999864221 13578999999999999999999999999999999999988653 57899999997654
Q ss_pred hhccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHH
Q 008534 225 KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (562)
Q Consensus 225 ~~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 304 (562)
+.+++.+|||.|||.++|++||+|+|.|.+.+|+|...++++++++++++++++||.+++||++|+...+++||||||||
T Consensus 100 ~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRv 179 (613)
T KOG0061|consen 100 RSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRV 179 (613)
T ss_pred hhhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHH
Confidence 46788899999999999999999999999999999888999999999999999999999999999988899999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHH
Q 008534 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (562)
Q Consensus 305 ~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~ 384 (562)
+||.+|+.||+||||||||||||+.++.++++.|++++++|+|||+++|||+.+++++||++++|.+|+++|+|+++++.
T Consensus 180 sia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~~~~~ 259 (613)
T KOG0061|consen 180 SIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSPRELL 259 (613)
T ss_pred HHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCCCCChHHHHHHhhcCCCCCcCCCchhhhhhccccccccccCCCCChhhHHHHHHHHHHHHHhHHHhhhh
Q 008534 385 AYFSSIGCSPQIAMNPAEFLLDLANGNLHDVSVPSELQDRVQTENSENDTANGKPTPAIVHEYLVEAYETRVAENEKKKL 464 (562)
Q Consensus 385 ~~f~~~g~~~~~~~npad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 464 (562)
+||+++|++||.+.||+||++++++.+ .. ........+..... ..... +. ...+... ++ ....
T Consensus 260 ~ff~~~G~~~P~~~Npadf~l~l~s~~-~~---~~~~~~~~~~~~~~-~~~~~-~~--~~~~~~~-~~--------~~~~ 322 (613)
T KOG0061|consen 260 EFFSSLGFPCPELENPADFLLDLLSVD-SG---TRELEEAVRIAKLI-NKFSQ-TD--NLKKTLE-AL--------EKSL 322 (613)
T ss_pred HHHHhCCCCCCCcCChHHHHHHHHccC-CC---chhHHhHHHHHHHh-hhccc-cc--hhhhhHH-HH--------hhhc
Confidence 999999999999999999999998754 00 00000000000000 00000 00 0000000 00 0000
Q ss_pred cCCCCCcHHhhhhcCCCCCCccCcHHHHHHHHHHHhHHH-hhcchhHHHHHHHHHHHHHHHHHHhhCCCCCChhhHHhHH
Q 008534 465 MAPIPLDEEIKAKVSSPKRNWGASWIQQYTILFRRGIKE-HRHDYFSWLRITQVLATAVILGLLWWQSDSKSPKGLEDQV 543 (562)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~~aliiG~lf~~~~~~~~~~~~~r~ 543 (562)
.... .......++||.|+++|++|.+++ +|++.+.+.|+++++++|+++|++||+++. +.+++++|.
T Consensus 323 ~~~~-----------~~~~~~~~s~~~q~~~L~~R~~~~~~R~~~~~~~r~~~~~~~~~~lg~~~~~~~~-~~~~~~~~~ 390 (613)
T KOG0061|consen 323 STSK-----------KVEIGTSPSWWTQFKILLKRSLKNIRRDPSLLLLRLIQSLVTGLLLGLLYLNLGN-DAKGIQNRL 390 (613)
T ss_pred cccc-----------ccccccCCcHHHHHHHHHHHHhHHHhhcHHHHHHHHHHHHHHHHHHHHHhhCCCC-chHHHHHHH
Confidence 0000 000111689999999999999998 677888899999999999999999999964 678888999
Q ss_pred HHHHHHHHHhhhhhhh
Q 008534 544 HNLFCWSIQLPSPIVF 559 (562)
Q Consensus 544 g~lFf~~~~~~~~~~~ 559 (562)
|++||++.++.+..++
T Consensus 391 g~~~~~~~~~~f~~~~ 406 (613)
T KOG0061|consen 391 GLFFFILSFMTFLSMF 406 (613)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999998887665554
|
|
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-66 Score=581.81 Aligned_cols=387 Identities=50% Similarity=0.841 Sum_probs=304.2
Q ss_pred ceeEEEEeEEEEEeeccc-C--------------------CccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHc
Q 008534 147 PIYLKFTDVTYKVILKGM-T--------------------SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSG 205 (562)
Q Consensus 147 ~~~l~~~nvs~~y~~~~~-~--------------------~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G 205 (562)
+..++|.|++|+....+. . ..+++.+|+|||+++++||++||+|||||||||||++|+|
T Consensus 37 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG 116 (659)
T PLN03211 37 PITLKFMDVCYRVKFENMKNKGSNIKRILGHKPKISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAG 116 (659)
T ss_pred ceEEEEEeEEEEEccCCCcccccccccccccccccccccccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhC
Confidence 568999999998743220 0 1124679999999999999999999999999999999999
Q ss_pred CCCCCCCccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCcccc
Q 008534 206 RLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQD 285 (562)
Q Consensus 206 ~l~~~~~~G~I~i~G~~~~~~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~ 285 (562)
+......+|+|.+||+++....++++|||+|++.+++.+||+||+.|++.++.+...+++++.++++++++.+||.++.|
T Consensus 117 ~~~~~~~sG~I~inG~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~ 196 (659)
T PLN03211 117 RIQGNNFTGTILANNRKPTKQILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCEN 196 (659)
T ss_pred CCCCCceeEEEEECCEECchhhccceEEECcccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcC
Confidence 76421248999999999866666789999999999999999999999887765544556666778999999999999999
Q ss_pred ccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCE
Q 008534 286 TMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDK 365 (562)
Q Consensus 286 t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~ 365 (562)
|.+|+..+++|||||||||+||++|+.+|+||||||||+|||+.++..+++.|++++++|+|||+++||++.++++.||+
T Consensus 197 t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~ 276 (659)
T PLN03211 197 TIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDS 276 (659)
T ss_pred ceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhce
Confidence 99999889999999999999999999999999999999999999999999999999888999999999998778899999
Q ss_pred EEEEcCCeEEEecChHHHHHHHHhcCCCCCCCCChHHHHHHhhcCCCCCcCCCchhhhhhccccccccccCCCCChhhHH
Q 008534 366 LILLGKGSLLYFGKASEAMAYFSSIGCSPQIAMNPAEFLLDLANGNLHDVSVPSELQDRVQTENSENDTANGKPTPAIVH 445 (562)
Q Consensus 366 i~vL~~G~iv~~G~~~el~~~f~~~g~~~~~~~npad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (562)
|++|++|++++.|+++++.+||+++|++||.+.|||||++++++.+...-.... . . .+ ...
T Consensus 277 iilL~~G~iv~~G~~~~~~~~f~~~G~~~P~~~NpADf~ldv~~~~~~~~~~~~---------~-~------~~---~~~ 337 (659)
T PLN03211 277 VLVLSEGRCLFFGKGSDAMAYFESVGFSPSFPMNPADFLLDLANGVCQTDGVSE---------R-E------KP---NVK 337 (659)
T ss_pred EEEecCCcEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHcCccccCCCccc---------c-c------cc---hHH
Confidence 999999999999999999999999999999999999999999865421100000 0 0 00 011
Q ss_pred HHHHHHHHHHHhHHHhhhh--c-CCCCCcHHh---hhh-cCCCCCCccCcHHHHHHHHHHHhHHHhhcchhHHHHHHHHH
Q 008534 446 EYLVEAYETRVAENEKKKL--M-APIPLDEEI---KAK-VSSPKRNWGASWIQQYTILFRRGIKEHRHDYFSWLRITQVL 518 (562)
Q Consensus 446 ~~l~~~~~~~~~~~~~~~~--~-~~~~~~~~~---~~~-~~~~~~~~~~s~~~Q~~~L~~R~~~~~r~~~~~~~r~~~~i 518 (562)
+.+.+.|.+.......... . ......... ... ....+..+..+||+|+++|++|+++++|++.+.+.|+++.+
T Consensus 338 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~~r~~~~~~~r~~~~i 417 (659)
T PLN03211 338 QSLVASYNTLLAPKVKAAIEMSHFPQANARFVGSASTKEHRSSDRISISTWFNQFSILLQRSLKERKHESFNTLRVFQVI 417 (659)
T ss_pred HHHHHHHHhhccHHHHHHHhhhhhhcchhhhhhcccccccccCCCccCCCHHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 1122222211100000000 0 000000000 000 00112235679999999999999999999988889999999
Q ss_pred HHHHHHHHHhhCCCCCChhhHHhHHHHHHHHHHHhhh
Q 008534 519 ATAVILGLLWWQSDSKSPKGLEDQVHNLFCWSIQLPS 555 (562)
Q Consensus 519 ~~aliiG~lf~~~~~~~~~~~~~r~g~lFf~~~~~~~ 555 (562)
++|+++|++||+++ ..++++|.|++||++++++.
T Consensus 418 ~~~ll~G~lf~~~~---~~~~~~r~g~lff~~~~~~~ 451 (659)
T PLN03211 418 AAALLAGLMWWHSD---FRDVQDRLGLLFFISIFWGV 451 (659)
T ss_pred HHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999984 47899999999999776543
|
|
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-62 Score=552.55 Aligned_cols=365 Identities=35% Similarity=0.581 Sum_probs=294.1
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC-CCccEEEECCEeCC-hhccCcEEEEccCCCCCCCCC
Q 008534 168 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP-TVGGSITYNDHPYS-KSLKSKIGFVTQDDVLFPHLT 245 (562)
Q Consensus 168 ~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~-~~~G~I~i~G~~~~-~~~~~~igyV~Q~~~l~~~lT 245 (562)
.++++|+|||+++++||+++|+|||||||||||++|+|+.... ..+|+|.+||.++. ..+++.+|||+|++.+++.+|
T Consensus 36 ~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lT 115 (617)
T TIGR00955 36 PRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLT 115 (617)
T ss_pred CccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCc
Confidence 3678999999999999999999999999999999999976421 14799999999986 356778999999999999999
Q ss_pred HHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcc-cCCCChhHHHHHHHHHHHhhCCCEEEEeCCCC
Q 008534 246 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSF-VRGVSGGERKRVCIGNEIIINPSLLFLDEPTS 324 (562)
Q Consensus 246 V~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~-~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTs 324 (562)
|+|||.|++.++.+...++++++++++++++.+||.++.||.+|+.. .++|||||||||+|||||+.+|+||||||||+
T Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPts 195 (617)
T TIGR00955 116 VREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTS 195 (617)
T ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCc
Confidence 99999999988877666777788889999999999999999999753 67899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHHHHHHhcCCCCCCCCChHHHH
Q 008534 325 GLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIGCSPQIAMNPAEFL 404 (562)
Q Consensus 325 gLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~~~f~~~g~~~~~~~npad~~ 404 (562)
|||+.++..+++.|++++++|+|||+++|||+.++++.||++++|++|++++.|+++++.+||+++|+.||.+.||+||+
T Consensus 196 gLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~ 275 (617)
T TIGR00955 196 GLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVPFFSDLGHPCPENYNPADFY 275 (617)
T ss_pred chhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHHHHHHHcCCCCCCCCChHHHH
Confidence 99999999999999999888999999999998788999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCCCcCCCchhhhhhccccccccccCCCCChhhHHHHHHHHHHHHHhHHH-hhhhcCCCCCcHHh-hhhcCCCC
Q 008534 405 LDLANGNLHDVSVPSELQDRVQTENSENDTANGKPTPAIVHEYLVEAYETRVAENE-KKKLMAPIPLDEEI-KAKVSSPK 482 (562)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~ 482 (562)
+++++.+..... . .....+.+.+.|.......+ .............. +.......
T Consensus 276 ~~~~~~~~~~~~---~--------------------~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (617)
T TIGR00955 276 VQVLAVIPGSEN---E--------------------SRERIEKICDSFAVSDIGRDMLVNTNLWSGKAGGLVKDSENMEG 332 (617)
T ss_pred HHHhhcCccccc---c--------------------hHHHHHHHHHHHhcchhhHHHHHHhhhhhccccccccccccccc
Confidence 998764321100 0 00011111222211100000 00000000000000 00001122
Q ss_pred CCccCcHHHHHHHHHHHhHHH-hhcchhHHHHHHHHHHHHHHHHHHhhCCCCCChhhHHhHHHHHHHHHHHhhhh
Q 008534 483 RNWGASWIQQYTILFRRGIKE-HRHDYFSWLRITQVLATAVILGLLWWQSDSKSPKGLEDQVHNLFCWSIQLPSP 556 (562)
Q Consensus 483 ~~~~~s~~~Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~~aliiG~lf~~~~~~~~~~~~~r~g~lFf~~~~~~~~ 556 (562)
..+..+|+.|+++|++|.+++ +|++.+.+.|+++.+++|+++|++||+++. ++.++++|.|++||+++++.+.
T Consensus 333 ~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~i~~~li~G~~f~~~~~-~~~~~~~~~g~lf~~~~~~~f~ 406 (617)
T TIGR00955 333 IGYNASWWTQFYALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGL-TQKGVQNINGALFLFLTNMTFQ 406 (617)
T ss_pred cccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCC-CHHHHHHHHHHHHHHHHHHHHH
Confidence 356789999999999999987 688888889999999999999999999975 6789999999999998765443
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-61 Score=578.75 Aligned_cols=382 Identities=29% Similarity=0.508 Sum_probs=303.0
Q ss_pred CCceeEEEEeEEEEEeecccC-----CccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEEC
Q 008534 145 TLPIYLKFTDVTYKVILKGMT-----SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYN 219 (562)
Q Consensus 145 ~~~~~l~~~nvs~~y~~~~~~-----~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~ 219 (562)
..+..+.|+||+|.++.+.-. ..+.+.+|+|||++++||+++||+|||||||||||++|+|+....+.+|+|.+|
T Consensus 863 ~~~~~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~in 942 (1470)
T PLN03140 863 FTPLAMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRIS 942 (1470)
T ss_pred CCcceEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEEC
Confidence 345579999999998532100 012457999999999999999999999999999999999976433468999999
Q ss_pred CEeCCh-hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCCh
Q 008534 220 DHPYSK-SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSG 298 (562)
Q Consensus 220 G~~~~~-~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSG 298 (562)
|.+... ..++.+|||+|++.+++.+||+|||.|++.++.+...+++++.++++++++.++|.++.|+.+|+..+++|||
T Consensus 943 G~~~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSg 1022 (1470)
T PLN03140 943 GFPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLST 1022 (1470)
T ss_pred CccCChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCH
Confidence 998753 4567799999999999999999999999877766555666667789999999999999999999877789999
Q ss_pred hHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcC-CeEEEe
Q 008534 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK-GSLLYF 377 (562)
Q Consensus 299 GqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~-G~iv~~ 377 (562)
||||||+||++|+.+|+||||||||+|||+.++..+++.|++++++|+|||+++|||+.++++.||++++|++ |+++++
T Consensus 1023 GerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~ 1102 (1470)
T PLN03140 1023 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYS 1102 (1470)
T ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEE
Confidence 9999999999999999999999999999999999999999999988999999999998778899999999996 899999
Q ss_pred cCh----HHHHHHHHhc-CC-CCCCCCChHHHHHHhhcCCCCCcCCCchhhhhhccccccccccCCCCChhhHHHHHHHH
Q 008534 378 GKA----SEAMAYFSSI-GC-SPQIAMNPAEFLLDLANGNLHDVSVPSELQDRVQTENSENDTANGKPTPAIVHEYLVEA 451 (562)
Q Consensus 378 G~~----~el~~~f~~~-g~-~~~~~~npad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 451 (562)
|++ +++++||+++ |+ .||.+.|||||++++++..... . ...+..+.+..+ +.
T Consensus 1103 G~~~~~~~~~~~yF~~~~g~~~~p~~~NPAd~~l~v~~~~~~~---------~--~~~d~~~~~~~s-----------~~ 1160 (1470)
T PLN03140 1103 GPLGRNSHKIIEYFEAIPGVPKIKEKYNPATWMLEVSSLAAEV---------K--LGIDFAEHYKSS-----------SL 1160 (1470)
T ss_pred CCcccccccHHHHHHhcCCCCCCCCCCCchhhhhhhhcccccc---------c--ccchHHHHHhcc-----------HH
Confidence 996 6899999998 56 4999999999999987532110 0 000000001111 01
Q ss_pred HHHHHhHHHhhhhcCCCCCcHHhhhhcCCCCCCccCcHHHHHHHHHHHhHHH-hhcchhHHHHHHHHHHHHHHHHHHhhC
Q 008534 452 YETRVAENEKKKLMAPIPLDEEIKAKVSSPKRNWGASWIQQYTILFRRGIKE-HRHDYFSWLRITQVLATAVILGLLWWQ 530 (562)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~~aliiG~lf~~ 530 (562)
|++..... ..+..+.+.. .......+|..+||.|+++|++|++++ ||++.+.+.|+++.+++|+++|++||+
T Consensus 1161 ~~~~~~~~--~~~~~~~~~~-----~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~R~p~~~~~r~~~~i~~al~~G~~f~~ 1233 (1470)
T PLN03140 1161 YQRNKALV--KELSTPPPGA-----SDLYFATQYSQSTWGQFKSCLWKQWWTYWRSPDYNLVRFFFTLAAALMVGTIFWK 1233 (1470)
T ss_pred HHHHHHHH--HHhccCCCCc-----cccccCccccCCHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHhhC
Confidence 11110000 0111111100 011123467899999999999999986 899999999999999999999999999
Q ss_pred CCCCC--hhhHHhHHHHHHHHHHHhhh
Q 008534 531 SDSKS--PKGLEDQVHNLFCWSIQLPS 555 (562)
Q Consensus 531 ~~~~~--~~~~~~r~g~lFf~~~~~~~ 555 (562)
++++. ..+++++.|++|++++|.+.
T Consensus 1234 ~~~~~~~~~~~~~~~g~l~~~~~~~~~ 1260 (1470)
T PLN03140 1234 VGTKRSNANDLTMVIGAMYAAVLFVGI 1260 (1470)
T ss_pred CCCCcchhhhHHHHHHHHHHHHHHHHH
Confidence 97542 36788999999999888665
|
|
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-62 Score=563.39 Aligned_cols=373 Identities=31% Similarity=0.543 Sum_probs=311.5
Q ss_pred EEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCC-hhcc
Q 008534 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS-KSLK 228 (562)
Q Consensus 150 l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~-~~~~ 228 (562)
..|+|+.|..+.+ ++.+.+|+||++.++||.++||||+|||||||||++|+||...+..+|+|++||.|.. +.++
T Consensus 788 ~~w~dl~~~~~~q----G~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~ 863 (1391)
T KOG0065|consen 788 FYWVDLPYEMPIQ----GGTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFA 863 (1391)
T ss_pred EEEEeCCcccccc----ccceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhc
Confidence 3444444444322 2567899999999999999999999999999999999999766667899999999998 6788
Q ss_pred CcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHH
Q 008534 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGN 308 (562)
Q Consensus 229 ~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAr 308 (562)
|.+|||.|+|.|.+.+||+|.|.|++.+|+|..++.+++.+.++++++.++|+++.|.+||..+ .+||.+||||++||.
T Consensus 864 R~~GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G-~GLs~eQRKrLTIgV 942 (1391)
T KOG0065|consen 864 RVSGYVEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPG-SGLSTEQRKRLTIGV 942 (1391)
T ss_pred cccceeecccccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCC-CCCCHHHhceeeEEE
Confidence 9999999999999999999999999999999999999999999999999999999999999887 999999999999999
Q ss_pred HHhhCC-CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcC-CeEEEecCh----HH
Q 008534 309 EIIINP-SLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK-GSLLYFGKA----SE 382 (562)
Q Consensus 309 aLl~~P-~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~-G~iv~~G~~----~e 382 (562)
+|+.+| .||||||||||||+.++..|++.++++++.|+||||++|||+.++++.||++++|++ |+.||.|+. +.
T Consensus 943 ELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~~s~~ 1022 (1391)
T KOG0065|consen 943 ELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGENSSK 1022 (1391)
T ss_pred EEecCCceeEEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCcccccHH
Confidence 999999 999999999999999999999999999999999999999999999999999999986 699999986 45
Q ss_pred HHHHHHhcC-CCCCCCCChHHHHHHhhcCCCCCcCCCchhhhhhccccccccccCCCCChhhHHHHHHHHHHHHHhHHHh
Q 008534 383 AMAYFSSIG-CSPQIAMNPAEFLLDLANGNLHDVSVPSELQDRVQTENSENDTANGKPTPAIVHEYLVEAYETRVAENEK 461 (562)
Q Consensus 383 l~~~f~~~g-~~~~~~~npad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 461 (562)
+++||+++| .+||...|||||++|++...... . ...++++.|..++..+...+. -
T Consensus 1023 li~YFes~~~~~~~~~~NPA~~mLevi~~~~~~---------~--~~~D~a~~w~~S~e~k~~~e~-------------v 1078 (1391)
T KOG0065|consen 1023 LIEYFESIGGVKCISDENPAEWMLEVIGAGAEA---------S--LSVDFAEIWKNSEEYKRNKEL-------------V 1078 (1391)
T ss_pred HHHHHHhcCCccCCCCCChHHHHHhhccccccc---------c--cCccHHHHHhccHHHHHHHHH-------------H
Confidence 778999997 78998889999999998643211 0 011122222222111111110 1
Q ss_pred hhhcCCCCCcHHhhhhcCCCCCCccCcHHHHHHHHHHHhHHH-hhcchhHHHHHHHHHHHHHHHHHHhhCCCCCChhhHH
Q 008534 462 KKLMAPIPLDEEIKAKVSSPKRNWGASWIQQYTILFRRGIKE-HRHDYFSWLRITQVLATAVILGLLWWQSDSKSPKGLE 540 (562)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~~aliiG~lf~~~~~~~~~~~~ 540 (562)
.++.++.+. +......+.+|..|+|.|++.+++|++.. ||+|.+.+.|++..++.||++|+.||+.+ .+..++|
T Consensus 1079 ~~l~~~~~~----~~~~~~~~~~fa~s~~~Q~k~~l~Rq~~syWRsp~y~~ar~~~~i~~gl~iGf~F~~~g-~~~q~lq 1153 (1391)
T KOG0065|consen 1079 KELSQPPPG----FSTDLEFKTRFAQSLWYQFKLCLWRQFLSYWRSPDYLMARFALTIVAGLFIGFTFWKVG-HNVQGLQ 1153 (1391)
T ss_pred HHHhcCCcc----CCcccccccccchhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhheeeeeecC-CcHHHHH
Confidence 112222222 11222345678999999999999999985 89999999999999999999999999998 4789999
Q ss_pred hHHHHHHHHHHHhhhh
Q 008534 541 DQVHNLFCWSIQLPSP 556 (562)
Q Consensus 541 ~r~g~lFf~~~~~~~~ 556 (562)
|.+|++|+.+++.+..
T Consensus 1154 n~m~a~yma~v~~~~~ 1169 (1391)
T KOG0065|consen 1154 NAMGAAYMATVFSGPN 1169 (1391)
T ss_pred HHHHHHHHHHHHhhhh
Confidence 9999999999887654
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-64 Score=552.43 Aligned_cols=363 Identities=24% Similarity=0.373 Sum_probs=299.0
Q ss_pred hHHHHHHHHHHHHHHHHhhcCCCccccccccCCCCcchhhhhhhhhhhcCCCcccccccceeeeeeccccccc-cccccc
Q 008534 8 TSLARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKL-ELDEVS 86 (562)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 86 (562)
.++.++.||+.|.++.+|+|.+++++|||+|+++..|.++|.++++..+.++.+++.+++.+ +.++..-.++ .+.-++
T Consensus 313 rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~~i~~k~a~a~~~f-~~~~~~~~~~~~~siL~ 391 (716)
T KOG0058|consen 313 RKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVLKLSKKEAVAYGIF-FGSTNLLGNLAVLSILF 391 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHh-HhHHHHHHhHHHHHHHH
Confidence 36889999999999999999999999999999999999999999999999999999999999 5555555554 455688
Q ss_pred chhhhhhhhhhhhhhhcccccCCCCccccccCCCCCCCCCccccccccCC----------CCCCCCCC-CCceeEEEEeE
Q 008534 87 SGAALSRASSASLGLSFSFTGFTMPPDEIADSKPFSDDDIPEDIEAGTRE----------RPKFQTEP-TLPIYLKFTDV 155 (562)
Q Consensus 87 ~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~-~~~~~l~~~nv 155 (562)
+|+.++..|.++.|.+.+|..|.+...........-+.++...+.+..+. .+.....| .....|+|+||
T Consensus 392 ~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~dr~P~i~~~G~~~p~~~~G~IeF~~V 471 (716)
T KOG0058|consen 392 YGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELMDRKPRIPLTGTLAPDHLQGVIEFEDV 471 (716)
T ss_pred hccchhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhccCCCCCCCCccccccccceEEEEEe
Confidence 99999999999999999999998876654333222222222223332221 01111112 23457999999
Q ss_pred EEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh----hccCcE
Q 008534 156 TYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKI 231 (562)
Q Consensus 156 s~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~----~~~~~i 231 (562)
+|.|+ .+++.+||+|+||+|+|||++|||||||+||||+.++|. ++|+|. +|+|++||+|+++ .+|++|
T Consensus 472 sFaYP-----~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~-rfY~Pt-sG~IllDG~~i~~~~~~~lr~~I 544 (716)
T KOG0058|consen 472 SFAYP-----TRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLL-RFYDPT-SGRILLDGVPISDINHKYLRRKI 544 (716)
T ss_pred eeecC-----CCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHH-HhcCCC-CCeEEECCeehhhcCHHHHHHHe
Confidence 99984 345788999999999999999999999999999999999 688765 8999999999863 578999
Q ss_pred EEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHh
Q 008534 232 GFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEII 311 (562)
Q Consensus 232 gyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl 311 (562)
|+|.|+|.||.. ||+|||.|+......+.+....+.+.+++++.. +++.+||.||.+. .+||||||||++|||||+
T Consensus 545 g~V~QEPvLFs~-sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~--~p~gY~T~VGEkG-~qLSGGQKQRIAIARALl 620 (716)
T KOG0058|consen 545 GLVGQEPVLFSG-SIRENIAYGLDNATDEEIEAAAKMANAHEFITN--FPDGYNTVVGEKG-SQLSGGQKQRIAIARALL 620 (716)
T ss_pred eeeeccceeecc-cHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHh--CccccccccCCcc-ccccchHHHHHHHHHHHh
Confidence 999999999975 999999998642111122233344556777764 5899999999754 469999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHHH
Q 008534 312 INPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (562)
Q Consensus 312 ~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~~ 385 (562)
+||+||||||+||+||.+++..|.+.|.++.+ ++|||+|.|++++ .+.+|+|+|+++|++++.|+|+|+++
T Consensus 621 r~P~VLILDEATSALDaeSE~lVq~aL~~~~~-~rTVlvIAHRLST--V~~Ad~Ivvi~~G~V~E~G~h~eLl~ 691 (716)
T KOG0058|consen 621 RNPRVLILDEATSALDAESEYLVQEALDRLMQ-GRTVLVIAHRLST--VRHADQIVVIDKGRVVEMGTHDELLS 691 (716)
T ss_pred cCCCEEEEechhhhcchhhHHHHHHHHHHhhc-CCeEEEEehhhhH--hhhccEEEEEcCCeEEecccHHHHhh
Confidence 99999999999999999999999999998875 6999999999986 58899999999999999999999985
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-60 Score=574.79 Aligned_cols=375 Identities=32% Similarity=0.571 Sum_probs=299.7
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC-CCccEEEECCEeCChhc
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP-TVGGSITYNDHPYSKSL 227 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~-~~~G~I~i~G~~~~~~~ 227 (562)
.++++||+|.|.. ++..+.+|+|||+++++||++||+|||||||||||++|+|+.... +.+|+|.+||+++...+
T Consensus 759 ~l~~~nl~~~~~~----~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~ 834 (1394)
T TIGR00956 759 IFHWRNLTYEVKI----KKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSF 834 (1394)
T ss_pred eEEEEeeEEEecC----CCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhh
Confidence 5899999999832 123568999999999999999999999999999999999976421 45799999999987667
Q ss_pred cCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHH
Q 008534 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (562)
Q Consensus 228 ~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA 307 (562)
++.+|||+|++.+++.+||+|||.|++.++.+...+++++.++++++++.++|.++.|+.+|+.. .+|||||||||+||
T Consensus 835 ~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~-~~LSgGqrqRl~Ia 913 (1394)
T TIGR00956 835 QRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPG-EGLNVEQRKRLTIG 913 (1394)
T ss_pred hcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCC-CCCCHHHhhHHHHH
Confidence 88899999999999999999999999887766555666777889999999999999999987543 37999999999999
Q ss_pred HHHhhCCC-EEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCC-eEEEecCh----H
Q 008534 308 NEIIINPS-LLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKG-SLLYFGKA----S 381 (562)
Q Consensus 308 raLl~~P~-iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G-~iv~~G~~----~ 381 (562)
+||+.+|+ ||||||||+|||+.++..+++.|++++++|+|||+++|||+..+++.||+|++|++| ++++.|++ +
T Consensus 914 ~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~~~~~ 993 (1394)
T TIGR00956 914 VELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGENSH 993 (1394)
T ss_pred HHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCcccccc
Confidence 99999997 999999999999999999999999998889999999999987677889999999997 99999997 6
Q ss_pred HHHHHHHhcCC-CCCCCCChHHHHHHhhcCCCCCcCCCchhhhhhccccccccccCCCCChhhHHHHHHHHHHHHHhHHH
Q 008534 382 EAMAYFSSIGC-SPQIAMNPAEFLLDLANGNLHDVSVPSELQDRVQTENSENDTANGKPTPAIVHEYLVEAYETRVAENE 460 (562)
Q Consensus 382 el~~~f~~~g~-~~~~~~npad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 460 (562)
++++||+++|+ +||.+.|||||++|+++....... ..+..+.+..++..+...+ .+.
T Consensus 994 ~~~~yf~~~G~~~~p~~~NpAd~~ldvi~~~~~~~~-----------~~~~~~~~~~s~~~~~~~~--------~~~--- 1051 (1394)
T TIGR00956 994 TIINYFEKHGAPKCPEDANPAEWMLEVIGAAPGAHA-----------NQDYHEVWRNSSEYQAVKN--------ELD--- 1051 (1394)
T ss_pred hHHHHHHhcCCCCCCCCCCHHHHHHHHhhcccccch-----------hccHHHHHhcCHHHHHHHH--------HHH---
Confidence 78999999996 999999999999998764321100 0000011111110000000 000
Q ss_pred hhhhcCCCCCcHHhhhhcCCCCCCccCcHHHHHHHHHHHhHHH-hhcchhHHHHHHHHHHHHHHHHHHhhCCCCCChhhH
Q 008534 461 KKKLMAPIPLDEEIKAKVSSPKRNWGASWIQQYTILFRRGIKE-HRHDYFSWLRITQVLATAVILGLLWWQSDSKSPKGL 539 (562)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~~aliiG~lf~~~~~~~~~~~ 539 (562)
....+........ ......++..|||+|+++|++|++++ ||++.+.+.|+++.+++|+++|++||++++ +..++
T Consensus 1052 --~~~~~~~~~~~~~--~~~~~~~~~~s~~~q~~~l~~R~~~~~~R~~~~~~~r~~~~i~~~l~~G~~f~~~~~-~~~~i 1126 (1394)
T TIGR00956 1052 --RLEAELSKAEDDN--DPDALSKYAASLWYQFKLVLWRTFQQYWRTPDYLYSKFFLTIFAALFIGFTFFKVGT-SLQGL 1126 (1394)
T ss_pred --HhhcccccCcccc--ccccccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhCCCC-CHHHH
Confidence 0000000000000 01122457899999999999999997 788888999999999999999999999975 67899
Q ss_pred HhHHHHHHHHHHHhhh
Q 008534 540 EDQVHNLFCWSIQLPS 555 (562)
Q Consensus 540 ~~r~g~lFf~~~~~~~ 555 (562)
++|.|++||++++++.
T Consensus 1127 ~~~~g~~f~~~~~~~~ 1142 (1394)
T TIGR00956 1127 QNQMFAVFMATVLFNP 1142 (1394)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999998876544
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-60 Score=576.56 Aligned_cols=371 Identities=28% Similarity=0.425 Sum_probs=289.3
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC--CCCccEEEECCEeCCh---hccCcEEEEccCCCCCCC
Q 008534 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME--PTVGGSITYNDHPYSK---SLKSKIGFVTQDDVLFPH 243 (562)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~--~~~~G~I~i~G~~~~~---~~~~~igyV~Q~~~l~~~ 243 (562)
.+.+|+|||+++++||+++|+||||||||||||+|+|+... ++.+|+|.+||+++.+ ..++.++||+|++.+++.
T Consensus 73 ~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~ 152 (1394)
T TIGR00956 73 TFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPH 152 (1394)
T ss_pred cceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCC
Confidence 46799999999999999999999999999999999997531 3468999999998742 345679999999999999
Q ss_pred CCHHHHHHHHHhhCCCC----CccHHHHHHH-HHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCEEE
Q 008534 244 LTVKETLTYAALLRLPN----TLTKQQKEKR-AIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLF 318 (562)
Q Consensus 244 lTV~enl~~~~~~~~~~----~~~~~~~~~~-v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLl 318 (562)
+||+|||.|++.++.+. ..++++..++ ++++++.+||.++.|+.+|+..+++|||||||||+||++|+.+|+|||
T Consensus 153 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vll 232 (1394)
T TIGR00956 153 LTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQC 232 (1394)
T ss_pred CCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEE
Confidence 99999999998776542 2334443333 466899999999999999999999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHHHHHHhcCCCCCCC
Q 008534 319 LDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIGCSPQIA 397 (562)
Q Consensus 319 LDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~~~f~~~g~~~~~~ 397 (562)
|||||+|||+.++.++++.|++++++ |+|||+++||++.+++++||+|++|++|+++++|+++++.+||+++|+.||++
T Consensus 233 lDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~~yF~~lG~~~p~~ 312 (1394)
T TIGR00956 233 WDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQYFEKMGFKCPDR 312 (1394)
T ss_pred EeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHHHHHHHHcCCCCCCC
Confidence 99999999999999999999999874 89999999999888999999999999999999999999999999999999999
Q ss_pred CChHHHHHHhhcCCCCCcCCCchhhhhhccccccccccCCCCChhhHHHHHHH--HHHHHHhHHHhhh-hcCCCCCcH--
Q 008534 398 MNPAEFLLDLANGNLHDVSVPSELQDRVQTENSENDTANGKPTPAIVHEYLVE--AYETRVAENEKKK-LMAPIPLDE-- 472 (562)
Q Consensus 398 ~npad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~-~~~~~~~~~-- 472 (562)
.||+||++++++.+.+.+. ...+... .....+..+.+.+ .|++...+.+... ........+
T Consensus 313 ~n~aDfl~~~~~~~~~~~~--~~~e~~~------------~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (1394)
T TIGR00956 313 QTTADFLTSLTSPAERQIK--PGYEKKV------------PRTPQEFETYWRNSPEYAQLMKEIDEYLDRCSESDTKEAY 378 (1394)
T ss_pred CChHHHHHhccChhhhhcc--ccccccC------------CCCHHHHHHHHHcCHHHHHHHHHHHHHhhhccchhhHHHH
Confidence 9999999999865432211 0000000 0011122221111 0111100000000 000000000
Q ss_pred -----HhhhhcCCCCCCccCcHHHHHHHHHHHhHHH-hhcchhHHHHHHHHHHHHHHHHHHhhCCCCCChhhHHhHHHHH
Q 008534 473 -----EIKAKVSSPKRNWGASWIQQYTILFRRGIKE-HRHDYFSWLRITQVLATAVILGLLWWQSDSKSPKGLEDQVHNL 546 (562)
Q Consensus 473 -----~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~~aliiG~lf~~~~~~~~~~~~~r~g~l 546 (562)
..+.+.......|..|||+|+++|++|++++ +|++.+.+.|+++.+++|+++|++||+++. ++.++++|.|+|
T Consensus 379 ~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~ii~~li~G~~F~~~~~-~~~~~~~r~g~l 457 (1394)
T TIGR00956 379 RESHVAKQSKRTRPSSPYTVSFSMQVKYCLARNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNLPK-NTSDFYSRGGAL 457 (1394)
T ss_pred HHHHHhhhcccccCCCCCcCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCC-CchhHHHHHHHH
Confidence 0000111233468899999999999999987 788888889999999999999999999975 568999999999
Q ss_pred HHHHHHhh
Q 008534 547 FCWSIQLP 554 (562)
Q Consensus 547 Ff~~~~~~ 554 (562)
||++++..
T Consensus 458 f~~~~~~~ 465 (1394)
T TIGR00956 458 FFAILFNA 465 (1394)
T ss_pred HHHHHHHH
Confidence 99988654
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-58 Score=553.76 Aligned_cols=367 Identities=26% Similarity=0.422 Sum_probs=281.3
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC-CCccEEEECCEeCChh-ccCcEEEEccCCCCCCCCCH
Q 008534 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP-TVGGSITYNDHPYSKS-LKSKIGFVTQDDVLFPHLTV 246 (562)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~-~~~G~I~i~G~~~~~~-~~~~igyV~Q~~~l~~~lTV 246 (562)
.+.+|+|||+.|+|||+++|+||||||||||||+|+|++... ..+|+|.+||+++.+. .++.++||+|++.+++.+||
T Consensus 177 ~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV 256 (1470)
T PLN03140 177 KLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTV 256 (1470)
T ss_pred cceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcH
Confidence 567999999999999999999999999999999999976421 1389999999987542 36779999999999999999
Q ss_pred HHHHHHHHhhCCCC-------CccHHHH------------------------HHHHHHHHHHcCCCccccccccCcccCC
Q 008534 247 KETLTYAALLRLPN-------TLTKQQK------------------------EKRAIDVINELGLERCQDTMIGGSFVRG 295 (562)
Q Consensus 247 ~enl~~~~~~~~~~-------~~~~~~~------------------------~~~v~~~l~~lgL~~~~~t~vg~~~~~~ 295 (562)
+|||.|++.++.+. ...++++ +..++++++.+||++++||.+|+..+++
T Consensus 257 ~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rg 336 (1470)
T PLN03140 257 KETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRG 336 (1470)
T ss_pred HHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccC
Confidence 99999998765321 1111111 1135678999999999999999999999
Q ss_pred CChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCcEEEEEecCCChHHHhcCCEEEEEcCCeE
Q 008534 296 VSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374 (562)
Q Consensus 296 LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~i 374 (562)
|||||||||+||++|+.+|++|||||||+|||+.++.++++.|+++++ .|+|||+++|||..+++++||+|++|++|++
T Consensus 337 lSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~i 416 (1470)
T PLN03140 337 ISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQI 416 (1470)
T ss_pred CCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCceE
Confidence 999999999999999999999999999999999999999999999976 4899999999998889999999999999999
Q ss_pred EEecChHHHHHHHHhcCCCCCCCCChHHHHHHhhcCCCCCcCCCchhhhhhccccccccccCCCCChhhHHHHHHHHHHH
Q 008534 375 LYFGKASEAMAYFSSIGCSPQIAMNPAEFLLDLANGNLHDVSVPSELQDRVQTENSENDTANGKPTPAIVHEYLVEAYET 454 (562)
Q Consensus 375 v~~G~~~el~~~f~~~g~~~~~~~npad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 454 (562)
+|+|+.+++.+||+++|+.||++.|||||++++++...... ... .... ....... +.+.++|++
T Consensus 417 vy~G~~~~~~~yF~~lGf~cP~~~n~ADFl~~v~s~~~~~~-------~~~---~~~~--p~~~~~~----~~~~~~~~~ 480 (1470)
T PLN03140 417 VYQGPRDHILEFFESCGFKCPERKGTADFLQEVTSKKDQEQ-------YWA---DRNK--PYRYISV----SEFAERFKS 480 (1470)
T ss_pred EEeCCHHHHHHHHHHcCCCCCCCCChHHHHHHhcCchhhhh-------hhh---ccCC--ccccCCH----HHHHHHHHh
Confidence 99999999999999999999999999999999986422100 000 0000 0000111 223333332
Q ss_pred HHhHH-HhhhhcCCCCCcHHhhhhcCCCCCCccCcHHHHHHHHHHHhHHH-hhcchhHHHHHHHHHHHHHHHHHHhhCCC
Q 008534 455 RVAEN-EKKKLMAPIPLDEEIKAKVSSPKRNWGASWIQQYTILFRRGIKE-HRHDYFSWLRITQVLATAVILGLLWWQSD 532 (562)
Q Consensus 455 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~~aliiG~lf~~~~ 532 (562)
..... ...++..+ .............+.|..++|.|++.|++|.++. +||+.+++.|+++.+++|+++|++||+++
T Consensus 481 s~~~~~~~~~~~~~--~~~~~~~~~~~~~~~y~~s~~~q~~~~~~R~~~~~~Rd~~~~~~r~~~~ii~ali~GsvF~~~~ 558 (1470)
T PLN03140 481 FHVGMQLENELSVP--FDKSQSHKAALVFSKYSVPKMELLKACWDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTE 558 (1470)
T ss_pred cHHHHHHHHHHhhh--hhhhhcccccccCCCCcCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 21100 00000000 0000001111123468899999999999999987 67777788999999999999999999996
Q ss_pred CC--ChhhHHhHHHHHHHHHHHh
Q 008534 533 SK--SPKGLEDQVHNLFCWSIQL 553 (562)
Q Consensus 533 ~~--~~~~~~~r~g~lFf~~~~~ 553 (562)
.+ +....+.+.|++||++++.
T Consensus 559 ~~~~~~~~~~~~~g~lff~~l~~ 581 (1470)
T PLN03140 559 MHTRNEEDGALYIGALLFSMIIN 581 (1470)
T ss_pred CCCCcchhHHHHHHHHHHHHHHH
Confidence 42 1234567788888876653
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-56 Score=425.90 Aligned_cols=218 Identities=33% Similarity=0.587 Sum_probs=197.8
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCC----
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---- 224 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~---- 224 (562)
+|+++||+++| ++..||+|||++|++||+++|+|||||||||||+||.+ +. ++++|+|.++|.++.
T Consensus 2 mi~i~~l~K~f--------g~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~-LE-~~~~G~I~i~g~~~~~~~~ 71 (240)
T COG1126 2 MIEIKNLSKSF--------GDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNG-LE-EPDSGSITVDGEDVGDKKD 71 (240)
T ss_pred eEEEEeeeEEe--------CCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHC-Cc-CCCCceEEECCEeccchhh
Confidence 58999999998 46789999999999999999999999999999999997 43 456899999998763
Q ss_pred -hhccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHH
Q 008534 225 -KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (562)
Q Consensus 225 -~~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqR 303 (562)
..+|+++|+|||+.+|||++||.||+.++...- ...++++.++++.++|+.+||.+.+|. ++.+||||||||
T Consensus 72 ~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v--~~~~k~eA~~~A~~lL~~VGL~~ka~~-----yP~qLSGGQqQR 144 (240)
T COG1126 72 ILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKV--KKLSKAEAREKALELLEKVGLADKADA-----YPAQLSGGQQQR 144 (240)
T ss_pred HHHHHHhcCeecccccccccchHHHHHHhhhHHH--cCCCHHHHHHHHHHHHHHcCchhhhhh-----CccccCcHHHHH
Confidence 246899999999999999999999999986432 245788888899999999999988876 568999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHH
Q 008534 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (562)
Q Consensus 304 v~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el 383 (562)
|+|||||+.+|+++++|||||+|||+...++++.+++|+++|.|.|++||++.. ..+.+|||++|++|+|++.|+++++
T Consensus 145 VAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~F-Ar~VadrviFmd~G~iie~g~p~~~ 223 (240)
T COG1126 145 VAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGF-AREVADRVIFMDQGKIIEEGPPEEF 223 (240)
T ss_pred HHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHH-HHHhhheEEEeeCCEEEEecCHHHH
Confidence 999999999999999999999999999999999999999999999999999875 5678999999999999999999886
Q ss_pred H
Q 008534 384 M 384 (562)
Q Consensus 384 ~ 384 (562)
.
T Consensus 224 f 224 (240)
T COG1126 224 F 224 (240)
T ss_pred h
Confidence 3
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-55 Score=498.76 Aligned_cols=364 Identities=25% Similarity=0.335 Sum_probs=270.3
Q ss_pred hHHHHHHHHHHHHHHHHhhcCCCccccccccCCCCcchhhhhhhhhhhcCCCcccccccceeeeeecccccccccccccc
Q 008534 8 TSLARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSS 87 (562)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (562)
++++++.++..+++.++|||++++.+||.+|+++..+.++|++-+......|.+++...|...-....+-...--..+|+
T Consensus 196 ~~~t~ke~~~ya~Ag~iaEe~i~~iRTV~af~gq~~e~~ry~~~L~~~~k~gi~~g~~~G~~~G~~~~~~~~~~a~~~Wy 275 (1228)
T KOG0055|consen 196 SKLTEKEQEAYAKAGSIAEEVISSIRTVYAFNGEKKEIERYSKALENALKFGIKKGLFKGLGLGFTFFLLFASYALAFWY 275 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 57888899999999999999999999999999999999999999988877766655555443111111111222335678
Q ss_pred hhhhhhhhhhhhhhhcccccCCC----------CccccccCCCCCCCCCccccccccCCCCCC---CCCCCCceeEEEEe
Q 008534 88 GAALSRASSASLGLSFSFTGFTM----------PPDEIADSKPFSDDDIPEDIEAGTRERPKF---QTEPTLPIYLKFTD 154 (562)
Q Consensus 88 g~~~~~~~~~~~g~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~n 154 (562)
|+.+...+....|..+......+ |.......-..+...+-+.++..+...+.. .........++|+|
T Consensus 276 G~~li~~~~~~~g~v~~v~~~vl~g~~sLgqa~p~l~~f~~a~~aa~~I~~~i~~~~~i~~~~~~~~~~~~~~g~ief~n 355 (1228)
T KOG0055|consen 276 GSTLILNGGYNGGDVITVFFSVLIGGMSLGQASPHLSAFAKARAAAYRIFETIDRKPSIDPYSKGGRVLSSIKGEIEFRN 355 (1228)
T ss_pred HHHHHhcCCCCCceEEEEEeehhhhhhhhhccccchHHHhccccchHHHHHHhcCCCCCCcccccCCcccccccceEEEE
Confidence 87777766555555544433221 111111111111111112222222111111 01122345799999
Q ss_pred EEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCC----hhccCc
Q 008534 155 VTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS----KSLKSK 230 (562)
Q Consensus 155 vs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~----~~~~~~ 230 (562)
|+|+|+ .+++.+||+|+||.|++|+.+||||||||||||++++|. |+++|. +|+|++||.++. +++|.+
T Consensus 356 V~FsYP-----sRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~-RfydP~-~G~V~idG~di~~~~~~~lr~~ 428 (1228)
T KOG0055|consen 356 VCFSYP-----SRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLA-RFYDPT-SGEVLIDGEDIRNLNLKWLRSQ 428 (1228)
T ss_pred EEecCC-----CCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHH-HhcCCC-CceEEEcCccchhcchHHHHhh
Confidence 999984 345778999999999999999999999999999999999 578765 899999999986 467999
Q ss_pred EEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHH
Q 008534 231 IGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEI 310 (562)
Q Consensus 231 igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraL 310 (562)
||.|.|+|.||. .||+|||.|+........+.+..+.+.+++++.. |++.++|.+|...+. |||||||||+|||||
T Consensus 429 iglV~QePvlF~-~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~--lp~g~~T~vge~g~q-LSGGQKQRIAIARal 504 (1228)
T KOG0055|consen 429 IGLVSQEPVLFA-TTIRENIRYGKPDATREEIEEAAKAANAHDFILK--LPDGYDTLVGERGVQ-LSGGQKQRIAIARAL 504 (1228)
T ss_pred cCeeeechhhhc-ccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHh--hHHhhcccccCCCCC-CChHHHHHHHHHHHH
Confidence 999999999996 6999999998422111112223333345566654 588999999987654 999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHHH
Q 008534 311 IINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (562)
Q Consensus 311 l~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~~ 385 (562)
+++|+|||||||||+||++++..+.++|.++. .|+|.|+|+|++++ .+.+|+|++|++|+||+.|+|+|+++
T Consensus 505 v~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~-~grTTivVaHRLSt--IrnaD~I~v~~~G~IvE~G~h~ELi~ 576 (1228)
T KOG0055|consen 505 VRNPKILLLDEATSALDAESERVVQEALDKAS-KGRTTIVVAHRLST--IRNADKIAVMEEGKIVEQGTHDELIA 576 (1228)
T ss_pred HhCCCEEEecCcccccCHHHHHHHHHHHHHhh-cCCeEEEEeeehhh--hhccCEEEEEECCEEEEecCHHHHHh
Confidence 99999999999999999999999999998876 59999999999986 46799999999999999999999985
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-52 Score=410.01 Aligned_cols=220 Identities=30% Similarity=0.566 Sum_probs=198.7
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
+|+|+|||+.| .++.+++|+||+|++||+++++|||||||||+||+|.+ +.+| ++|+|++||+++..
T Consensus 1 MI~~~nvsk~y--------~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINr-Liep-t~G~I~i~g~~i~~~d~ 70 (309)
T COG1125 1 MIEFENVSKRY--------GNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINR-LIEP-TSGEILIDGEDISDLDP 70 (309)
T ss_pred Cceeeeeehhc--------CCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhc-ccCC-CCceEEECCeecccCCH
Confidence 48999999998 36789999999999999999999999999999999995 5554 58999999999864
Q ss_pred -hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHH
Q 008534 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (562)
Q Consensus 226 -~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 304 (562)
.+|++||||-|.-.|||++||.|||.+-..+. +.+++..+++++++++.+||++. ...++++++|||||+|||
T Consensus 71 ~~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~---~w~k~~i~~r~~ELl~lvgL~p~---~~~~RyP~eLSGGQQQRV 144 (309)
T COG1125 71 VELRRKIGYVIQQIGLFPHLTVAENIATVPKLL---GWDKERIKKRADELLDLVGLDPS---EYADRYPHELSGGQQQRV 144 (309)
T ss_pred HHHHHhhhhhhhhcccCCCccHHHHHHhhhhhc---CCCHHHHHHHHHHHHHHhCCCHH---HHhhcCchhcCcchhhHH
Confidence 58999999999999999999999999876553 45678888999999999999752 123467899999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHH
Q 008534 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (562)
Q Consensus 305 ~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el 383 (562)
.+||||+.+|+||++|||+++|||.++.++.+.++++.++ |+|||++|||+. +.++++|||++|++|+++.+++|+++
T Consensus 145 Gv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDid-EA~kLadri~vm~~G~i~Q~~~P~~i 223 (309)
T COG1125 145 GVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDID-EALKLADRIAVMDAGEIVQYDTPDEI 223 (309)
T ss_pred HHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHH-HHHhhhceEEEecCCeEEEeCCHHHH
Confidence 9999999999999999999999999999999999999765 999999999976 57899999999999999999999998
Q ss_pred HH
Q 008534 384 MA 385 (562)
Q Consensus 384 ~~ 385 (562)
+.
T Consensus 224 l~ 225 (309)
T COG1125 224 LA 225 (309)
T ss_pred Hh
Confidence 74
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-52 Score=418.19 Aligned_cols=222 Identities=28% Similarity=0.464 Sum_probs=198.4
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCC----
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---- 224 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~---- 224 (562)
+|++++|++.|..+ ......+|+||||+|++||+++|+|.||||||||+|||.+ +.. |++|+|.+||.++.
T Consensus 1 mI~l~~vsK~~~~~---~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~-Le~-PtsG~v~v~G~di~~l~~ 75 (339)
T COG1135 1 MIELENVSKTFGQT---GTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINL-LER-PTSGSVFVDGQDLTALSE 75 (339)
T ss_pred CeEEEeeeeeeccC---CCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhc-cCC-CCCceEEEcCEecccCCh
Confidence 48999999988421 1234579999999999999999999999999999999996 444 56899999998875
Q ss_pred ---hhccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHH
Q 008534 225 ---KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGER 301 (562)
Q Consensus 225 ---~~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqr 301 (562)
+..|++||++||+++|+...||+||++|+..+. +.++++.++++.++++.+||++..+. ++.+||||||
T Consensus 76 ~~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLeia---g~~k~ei~~RV~elLelVgL~dk~~~-----yP~qLSGGQK 147 (339)
T COG1135 76 AELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELA---GVPKAEIKQRVAELLELVGLSDKADR-----YPAQLSGGQK 147 (339)
T ss_pred HHHHHHHhhccEEeccccccccchHHhhhhhhHhhc---CCCHHHHHHHHHHHHHHcCChhhhcc-----CchhcCcchh
Confidence 246889999999999999999999999998765 46789999999999999999987775 5689999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecCh
Q 008534 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 380 (562)
Q Consensus 302 qRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~ 380 (562)
|||+|||||+.+|+|||+|||||+|||.+...|++.|+++.++ |.||++|||+++ .+.++||||.||++|++++.|+.
T Consensus 148 QRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~-Vvk~ic~rVavm~~G~lvE~G~v 226 (339)
T COG1135 148 QRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEME-VVKRICDRVAVLDQGRLVEEGTV 226 (339)
T ss_pred hHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHH-HHHHHhhhheEeeCCEEEEeccH
Confidence 9999999999999999999999999999999999999999754 999999999975 57889999999999999999998
Q ss_pred HHHH
Q 008534 381 SEAM 384 (562)
Q Consensus 381 ~el~ 384 (562)
.++.
T Consensus 227 ~~vF 230 (339)
T COG1135 227 SEVF 230 (339)
T ss_pred HHhh
Confidence 8864
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-53 Score=487.20 Aligned_cols=359 Identities=24% Similarity=0.338 Sum_probs=276.1
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCccccccccCCCCcchhhhhhhhhhhcCCCcccccccceeeeeecccccccccccccch
Q 008534 9 SLARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSG 88 (562)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 88 (562)
+-+++.++...++...|-|..++.+||++|+.+.--...|.+.+.....-+.++++-.|.---.+.+...-..-..+++|
T Consensus 834 ~~~~~~~~~~~ea~~iA~eai~NIrTV~al~~e~~~~~~y~~~l~~p~~~~~~~~~i~gl~f~~sqs~~~~~~A~~f~~G 913 (1228)
T KOG0055|consen 834 GFSKDDKKAYEEASKIAIEAVSNIRTVAALCAEEKFMELYKEELEKPRKSSFKRGLISGLGFGFSQSLLFFVYALSFWYG 913 (1228)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566678889999999999999999999999998888888887777665555555444331112222222223334444
Q ss_pred hh-----------------hhhhhhhhhhhhcccccCCCCccccccCCCCCCCCCccccccccCCCCCCCCCCCCceeEE
Q 008534 89 AA-----------------LSRASSASLGLSFSFTGFTMPPDEIADSKPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLK 151 (562)
Q Consensus 89 ~~-----------------~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 151 (562)
+. +..+++.+.+...++++ +......++...|...|-.+.++... +.....+.....|+
T Consensus 914 ~~Li~~g~~~~~~~~~vf~~l~~ta~~~~~~~s~~P-d~~ka~~Aa~~iF~i~dr~~~i~~~~---~~~~~~~~~~G~I~ 989 (1228)
T KOG0055|consen 914 ARLISNGEMTFEDVFRVFMALSFTAMALGQASSYAP-DISKAKIAAGSIFEILDRKPTIDPDS---TSGGKLPNVKGDIE 989 (1228)
T ss_pred HHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHhhCc-HHHHHHHHHHHHHHHhcCCCCCCCCC---CCCCccccceeEEE
Confidence 44 44555667777777766 55555555555555554443333221 11111233456799
Q ss_pred EEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCC----hhc
Q 008534 152 FTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS----KSL 227 (562)
Q Consensus 152 ~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~----~~~ 227 (562)
|+||+|.|+ .+++.+||+|+|++|++|+.+||||||||||||++.+|. |+|+|. +|.|.+||.+++ +.+
T Consensus 990 ~~~V~F~YP-----sRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLe-RfYdp~-~G~V~IDg~dik~lnl~~L 1062 (1228)
T KOG0055|consen 990 FRNVSFAYP-----TRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLE-RFYDPD-AGKVKIDGVDIKDLNLKWL 1062 (1228)
T ss_pred EeeeEeeCC-----CCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHH-HhcCCC-CCeEEECCcccccCCHHHH
Confidence 999999984 456889999999999999999999999999999999999 788765 899999999986 368
Q ss_pred cCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHH
Q 008534 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (562)
Q Consensus 228 ~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA 307 (562)
|+++|.|.|+|.||. .|++|||.||...-....+.++.+.+.+++++. +|++++||.+|++. .+||||||||++||
T Consensus 1063 R~~i~lVsQEP~LF~-~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~--sLP~GyDT~vGerG-~QLSGGQKQRIAIA 1138 (1228)
T KOG0055|consen 1063 RKQIGLVSQEPVLFN-GTIRENIAYGSEEVSEEEIIEAAKLANAHNFIS--SLPQGYDTRVGERG-VQLSGGQKQRIAIA 1138 (1228)
T ss_pred HHhcceeccCchhhc-ccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHh--cCcCcccCccCccc-CcCCchHHHHHHHH
Confidence 999999999999997 599999999921100011223334445666664 67999999999765 56999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHHH
Q 008534 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (562)
Q Consensus 308 raLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~~ 385 (562)
|||++||+||||||.||+||+++++.+.++|.+.. .|+|.|+|+|++++ .+.||.|+|+++|+|++.|+|+++++
T Consensus 1139 RAilRnPkILLLDEATSALDseSErvVQeALd~a~-~gRT~IvIAHRLST--IqnaD~I~Vi~~G~VvE~GtH~~L~~ 1213 (1228)
T KOG0055|consen 1139 RAILRNPKILLLDEATSALDSESERVVQEALDRAM-EGRTTIVIAHRLST--IQNADVIAVLKNGKVVEQGTHDELLA 1213 (1228)
T ss_pred HHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhh-cCCcEEEEecchhh--hhcCCEEEEEECCEEEecccHHHHHh
Confidence 99999999999999999999999999999999876 59999999999986 68999999999999999999999986
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-53 Score=477.79 Aligned_cols=362 Identities=24% Similarity=0.320 Sum_probs=273.0
Q ss_pred HHHHHHHHHHHHHHHhhcCCCccccccccCCCCcchhhhhhhhhhhcCCCcccccccceeeeeecccccccccccccchh
Q 008534 10 LARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSGA 89 (562)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 89 (562)
..++..+.-++..+.-.|.+...+|+++.+.++....++.++.......+.+..-.......-....|.-..+.-++.|+
T Consensus 320 ~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~v~iL~~G~ 399 (709)
T COG2274 320 KTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKLALILNTIKSLLQQLSSVLILWFGA 399 (709)
T ss_pred HHHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555566667888999999999999999999999998888877666542222222222234444555666789999
Q ss_pred hhhhhhhhhhhhhcccccCCCCccccccCCCC----------CCCCCccccccccCCCC-C-CCCCCCCceeEEEEeEEE
Q 008534 90 ALSRASSASLGLSFSFTGFTMPPDEIADSKPF----------SDDDIPEDIEAGTRERP-K-FQTEPTLPIYLKFTDVTY 157 (562)
Q Consensus 90 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~l~~~nvs~ 157 (562)
.++..+..+.|.+++|..+.-........... +..++...+..+..... . ....+.....++|+||+|
T Consensus 400 ~lVl~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E~~~~~~~~~~~~~~g~I~~~nvsf 479 (709)
T COG2274 400 ILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQEGDKTLIHLPKLQGEIEFENVSF 479 (709)
T ss_pred HHHhcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccccccccCceEEEEEEEE
Confidence 99999999999999997754333222111100 11111111222211111 1 123444566899999999
Q ss_pred EEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCC----hhccCcEEE
Q 008534 158 KVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS----KSLKSKIGF 233 (562)
Q Consensus 158 ~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~----~~~~~~igy 233 (562)
+|. ..+.++|+|+|++|+|||.+||+|+||||||||+|+|+|+ +.| .+|+|++||.|+. ..+|++|||
T Consensus 480 ~y~------~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gl-y~p-~~G~I~~dg~dl~~i~~~~lR~~ig~ 551 (709)
T COG2274 480 RYG------PDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGL-YKP-QQGRILLDGVDLNDIDLASLRRQVGY 551 (709)
T ss_pred EeC------CCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcC-CCC-CCceEEECCEeHHhcCHHHHHhheeE
Confidence 993 2344799999999999999999999999999999999985 544 5899999999986 368999999
Q ss_pred EccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhC
Q 008534 234 VTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIIN 313 (562)
Q Consensus 234 V~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~ 313 (562)
|+||+.+|.. ||+||+.++......+.+..+...+.+++.+.. ++..++|.+|+. ..+||||||||++|||||+++
T Consensus 552 V~Q~~~Lf~g-SI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~--lP~gy~t~v~E~-G~~LSGGQrQrlalARaLl~~ 627 (709)
T COG2274 552 VLQDPFLFSG-SIRENIALGNPEATDEEIIEAAQLAGAHEFIEN--LPMGYDTPVGEG-GANLSGGQRQRLALARALLSK 627 (709)
T ss_pred EcccchhhcC-cHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHh--cccccccccccC-CCCCCHHHHHHHHHHHHhccC
Confidence 9999999975 999999987432111112223333445666654 588899999865 467999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHHHH
Q 008534 314 PSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAY 386 (562)
Q Consensus 314 P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~~~ 386 (562)
|+|||||||||+||+.+++.|.+.|.++.. |+|+|+++|+++. .+.||+|+||++|+|+++|+|+|+++.
T Consensus 628 P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~-~~T~I~IaHRl~t--i~~adrIiVl~~Gkiv~~gs~~ell~~ 697 (709)
T COG2274 628 PKILLLDEATSALDPETEAIILQNLLQILQ-GRTVIIIAHRLST--IRSADRIIVLDQGKIVEQGSHEELLAQ 697 (709)
T ss_pred CCEEEEeCcccccCHhHHHHHHHHHHHHhc-CCeEEEEEccchH--hhhccEEEEccCCceeccCCHHHHHHh
Confidence 999999999999999999999999999874 7999999999874 689999999999999999999999864
|
|
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-51 Score=473.45 Aligned_cols=366 Identities=32% Similarity=0.538 Sum_probs=291.3
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC-CCccEEEECCEeCChhc-cCcEEEEccCCCCCCCCCH
Q 008534 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP-TVGGSITYNDHPYSKSL-KSKIGFVTQDDVLFPHLTV 246 (562)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~-~~~G~I~i~G~~~~~~~-~~~igyV~Q~~~l~~~lTV 246 (562)
...+|+|+|+-++||+++.++||+||||||||++|+|.+..- ...|+|.+||.+.++.. ++.++|.+|+|.++|.|||
T Consensus 127 ~~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTV 206 (1391)
T KOG0065|consen 127 KIQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTV 206 (1391)
T ss_pred cceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEE
Confidence 457999999999999999999999999999999999976542 23579999999987533 5779999999999999999
Q ss_pred HHHHHHHHhhCCCC----CccHHHHHH-HHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEeC
Q 008534 247 KETLTYAALLRLPN----TLTKQQKEK-RAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDE 321 (562)
Q Consensus 247 ~enl~~~~~~~~~~----~~~~~~~~~-~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDE 321 (562)
+|+|.|+++++.+. +.++.++.+ ..+.+++.+||++|+||+||+...+++||||||||+||.+++.+|+++++||
T Consensus 207 reTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De 286 (1391)
T KOG0065|consen 207 RETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDE 286 (1391)
T ss_pred eehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeec
Confidence 99999999998762 233333333 5667889999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHHHHHHhcCCCCCCCCCh
Q 008534 322 PTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIGCSPQIAMNP 400 (562)
Q Consensus 322 PTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~~~f~~~g~~~~~~~np 400 (562)
+|.|||+.++.++++.|+++++. +.|++++.|||+.+++++||+|++|.+|+++|+|+.+++++||+++|+.||++.++
T Consensus 287 ~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~yFe~~Gf~cP~r~~~ 366 (1391)
T KOG0065|consen 287 ITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLPYFEDMGFKCPPRKGT 366 (1391)
T ss_pred ccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHHHHHhcCccCCCccCH
Confidence 99999999999999999999865 88999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCCCcCCCchhhhhhccccccccccCCCCChhhHHHHHHH--HHHHHHhHHHhhhhcCCCCCcHHhhhhc
Q 008534 401 AEFLLDLANGNLHDVSVPSELQDRVQTENSENDTANGKPTPAIVHEYLVE--AYETRVAENEKKKLMAPIPLDEEIKAKV 478 (562)
Q Consensus 401 ad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (562)
|||+.++++..... . ....... ......+.+..+++.+ .|.+... ++..+ .+.....+.
T Consensus 367 ADfLt~vts~k~~~-~----------~~~~~~~-~~~~~~~~ef~~~~~~s~~~~~l~~-----~l~~~--~~~~k~~~~ 427 (1391)
T KOG0065|consen 367 ADFLTEVTSKKDQE-Q----------YWNKRSK-PYPYTSVSEFAEYFLNSEDYAKLKK-----ELSKP--YDKSKKHKA 427 (1391)
T ss_pred HHHHHHhhcCcccc-c----------cccccCC-CcccCCHHHHHHHHhcchhhHHHHH-----Hhcch--hhhhhccch
Confidence 99999998721110 0 0000000 0011112333333321 1221111 11111 111111122
Q ss_pred CCCCCCccCcHHHHHHHHHHHhHHHh-hcchhHHHHHHHHHHHHHHHHHHhhCCCCCChhhHHhHHHHHHHHHHHh
Q 008534 479 SSPKRNWGASWIQQYTILFRRGIKEH-RHDYFSWLRITQVLATAVILGLLWWQSDSKSPKGLEDQVHNLFCWSIQL 553 (562)
Q Consensus 479 ~~~~~~~~~s~~~Q~~~L~~R~~~~~-r~~~~~~~r~~~~i~~aliiG~lf~~~~~~~~~~~~~r~g~lFf~~~~~ 553 (562)
....+.|..++|.|++.|+.|.|... ||..++..++++.+++|+|+|++||+++-++..+.+.|.|+|||.+++.
T Consensus 428 al~s~~y~v~~~~qvk~c~~R~f~l~k~n~~~~~~~~~~~~i~ali~gslF~~~~~~t~~~~~~~~~~lffsll~~ 503 (1391)
T KOG0065|consen 428 ALVSSKYSVPYWEQVKACTIREFLLMKRNYFYYVFKTVQLVIQALITGSLFYRTPMSTTSGGYSRGGALFFALLFN 503 (1391)
T ss_pred hhcCCceeccHHHHHHHHHHHHHHHHhCCceEEEhHHHHHHHHHHHHhhheeeccCcccccchhhhhHHHHHHHHH
Confidence 34456789999999999999999875 5555666899999999999999999996346678999999999998753
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-50 Score=392.95 Aligned_cols=221 Identities=32% Similarity=0.522 Sum_probs=198.1
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh--
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~-- 225 (562)
..|++++|+++| +++.|++||||+|++||+++||||||||||||||+|.|.+. |.+|+|.++|.++..
T Consensus 7 ~~I~vr~v~~~f--------G~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~--P~~GeI~i~G~~i~~ls 76 (263)
T COG1127 7 PLIEVRGVTKSF--------GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLR--PDKGEILIDGEDIPQLS 76 (263)
T ss_pred ceEEEeeeeeec--------CCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCC--CCCCeEEEcCcchhccC
Confidence 369999999998 57889999999999999999999999999999999999664 568999999998752
Q ss_pred -----hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhH
Q 008534 226 -----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGE 300 (562)
Q Consensus 226 -----~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGq 300 (562)
..++++|++||+-.||..+||+||+.|..+-. ...+++..++.+..-|+.+||+.. +.+.++.+|||||
T Consensus 77 ~~~~~~ir~r~GvlFQ~gALFssltV~eNVafplre~--~~lp~~~i~~lv~~KL~~VGL~~~----~~~~~PsELSGGM 150 (263)
T COG1127 77 EEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREH--TKLPESLIRELVLMKLELVGLRGA----AADLYPSELSGGM 150 (263)
T ss_pred HHHHHHHHhheeEEeeccccccccchhHhhheehHhh--ccCCHHHHHHHHHHHHHhcCCChh----hhhhCchhhcchH
Confidence 46789999999999999999999999976533 246777888888888999999865 1234678999999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecC
Q 008534 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (562)
Q Consensus 301 rqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (562)
+||++|||||+.+|+|||+||||+||||.++..+.++++++.+. |.|+|+||||+.+ ++..||||++|.+|+|++.|+
T Consensus 151 ~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s-~~~i~Drv~~L~~gkv~~~Gt 229 (263)
T COG1127 151 RKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDS-LLTIADRVAVLADGKVIAEGT 229 (263)
T ss_pred HHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHH-HHhhhceEEEEeCCEEEEeCC
Confidence 99999999999999999999999999999999999999999865 9999999999875 789999999999999999999
Q ss_pred hHHHHH
Q 008534 380 ASEAMA 385 (562)
Q Consensus 380 ~~el~~ 385 (562)
++++.+
T Consensus 230 ~~el~~ 235 (263)
T COG1127 230 PEELLA 235 (263)
T ss_pred HHHHHh
Confidence 999864
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-50 Score=417.23 Aligned_cols=218 Identities=28% Similarity=0.493 Sum_probs=198.2
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh--h
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--S 226 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--~ 226 (562)
.|+++||++.| ++..+|+|||++|+.||+++|+||||||||||||+|+|+. .+++|+|.++|.+++. .
T Consensus 3 ~i~l~~v~K~y--------g~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe--~~~~G~I~i~g~~vt~l~P 72 (338)
T COG3839 3 ELELKNVRKSF--------GSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLE--EPTSGEILIDGRDVTDLPP 72 (338)
T ss_pred EEEEeeeEEEc--------CCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC--CCCCceEEECCEECCCCCh
Confidence 58999999998 1222999999999999999999999999999999999953 3568999999999874 3
Q ss_pred ccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHH
Q 008534 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (562)
Q Consensus 227 ~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~I 306 (562)
.+|.||+|||+..|||+|||+|||.|+...+ ..++++.++++.++.+.++|.+..|+. +++|||||||||+|
T Consensus 73 ~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~---~~~k~ei~~rV~eva~~L~l~~lL~r~-----P~~LSGGQrQRVAl 144 (338)
T COG3839 73 EKRGIAMVFQNYALYPHMTVYENIAFGLKLR---GVPKAEIDKRVKEVAKLLGLEHLLNRK-----PLQLSGGQRQRVAL 144 (338)
T ss_pred hHCCEEEEeCCccccCCCcHHHHhhhhhhhC---CCchHHHHHHHHHHHHHcCChhHHhcC-----cccCChhhHHHHHH
Confidence 5688999999999999999999999998765 457888899999999999999988764 67999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHHH
Q 008534 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (562)
Q Consensus 307 AraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~~ 385 (562)
||||+++|++++||||+|+||+..+..+...|+++.++ |.|+|++|||.. ++..++|||+||++|+|...|+|.++.+
T Consensus 145 aRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~-EAmtladri~Vm~~G~i~Q~g~p~ely~ 223 (338)
T COG3839 145 ARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQV-EAMTLADRIVVMNDGRIQQVGTPLELYE 223 (338)
T ss_pred HHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHH-HHHhhCCEEEEEeCCeeeecCChHHHhh
Confidence 99999999999999999999999999999999999765 899999999964 5788999999999999999999999854
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-50 Score=413.05 Aligned_cols=222 Identities=34% Similarity=0.582 Sum_probs=198.4
Q ss_pred eEEEEeEEEEEeecccCCcc-ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh--
Q 008534 149 YLKFTDVTYKVILKGMTSSE-EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~-~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~-- 225 (562)
.++++||+++| + .+.+|+||||+|++|+++||+||||||||||+|+|+|.+. +++|+|.++|.+..+
T Consensus 4 ~i~~~~l~k~~--------~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~--p~~G~i~i~G~~~~~~~ 73 (293)
T COG1131 4 VIEVRNLTKKY--------GGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLK--PTSGEILVLGYDVVKEP 73 (293)
T ss_pred eeeecceEEEe--------CCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEEcCEeCccCH
Confidence 57899999998 3 4789999999999999999999999999999999999664 468999999998764
Q ss_pred -hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHH
Q 008534 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (562)
Q Consensus 226 -~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 304 (562)
..+++||||+|++.+++.+||+|||.|.+.++... ....+++++++++.++|.+..++ .+++||+||||||
T Consensus 74 ~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~---~~~~~~~~~~~l~~~~L~~~~~~-----~~~~lS~G~kqrl 145 (293)
T COG1131 74 AKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLS---KEEAEERIEELLELFGLEDKANK-----KVRTLSGGMKQRL 145 (293)
T ss_pred HHHHhheEEEccCCCCCccccHHHHHHHHHHHhCCC---hhHHHHHHHHHHHHcCCchhhCc-----chhhcCHHHHHHH
Confidence 56788999999999999999999999998887432 24556789999999999874444 4578999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCC-cEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHH
Q 008534 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAG-KTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (562)
Q Consensus 305 ~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g-~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el 383 (562)
+||+||+.+|+||||||||+||||.++.++++.|++++++| +|||++||.+. ++..+||+|++|++|++++.|+++++
T Consensus 146 ~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~-e~~~~~d~v~il~~G~~~~~g~~~~l 224 (293)
T COG1131 146 SIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILE-EAEELCDRVIILNDGKIIAEGTPEEL 224 (293)
T ss_pred HHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHH-HHHHhCCEEEEEeCCEEEEeCCHHHH
Confidence 99999999999999999999999999999999999999887 89999999976 47888999999999999999999998
Q ss_pred HHHHHh
Q 008534 384 MAYFSS 389 (562)
Q Consensus 384 ~~~f~~ 389 (562)
...+..
T Consensus 225 ~~~~~~ 230 (293)
T COG1131 225 KEKFGG 230 (293)
T ss_pred HHhhcc
Confidence 776543
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-50 Score=421.20 Aligned_cols=233 Identities=27% Similarity=0.474 Sum_probs=205.5
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh--
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~-- 225 (562)
..++++||++.| ++..+|+|||++|++||+++|+|||||||||||++|+|. .. +++|+|.++|+++..
T Consensus 4 ~~l~i~~v~k~y--------g~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGf-e~-p~~G~I~l~G~~i~~lp 73 (352)
T COG3842 4 PALEIRNVSKSF--------GDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGF-EQ-PSSGEILLDGEDITDVP 73 (352)
T ss_pred ceEEEEeeeeec--------CCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCC-CC-CCCceEEECCEECCCCC
Confidence 369999999998 367899999999999999999999999999999999994 33 568999999999874
Q ss_pred hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHH
Q 008534 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC 305 (562)
Q Consensus 226 ~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ 305 (562)
..+|.||+|||+..|||+|||+||+.|+...+ ....+++.++++.++++.++|++..+. ++.+|||||||||+
T Consensus 74 p~kR~ig~VFQ~YALFPHltV~~NVafGLk~~--~~~~~~~i~~rv~e~L~lV~L~~~~~R-----~p~qLSGGQqQRVA 146 (352)
T COG3842 74 PEKRPIGMVFQSYALFPHMTVEENVAFGLKVR--KKLKKAEIKARVEEALELVGLEGFADR-----KPHQLSGGQQQRVA 146 (352)
T ss_pred hhhcccceeecCcccCCCCcHHHHhhhhhhhc--CCCCHHHHHHHHHHHHHHcCchhhhhh-----ChhhhChHHHHHHH
Confidence 45789999999999999999999999998733 234567788899999999999986665 56899999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHH
Q 008534 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (562)
Q Consensus 306 IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~ 384 (562)
|||||+.+|++||||||.|+||..-+.++...|+++.++ |.|.|++|||.. +.+.++|||+||++|+|...|+|+|+.
T Consensus 147 LARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqe-EAl~msDrI~Vm~~G~I~Q~gtP~eiY 225 (352)
T COG3842 147 LARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQE-EALAMSDRIAVMNDGRIEQVGTPEEIY 225 (352)
T ss_pred HHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHH-HHhhhccceEEccCCceeecCCHHHHh
Confidence 999999999999999999999999999999999999754 999999999965 577999999999999999999999984
Q ss_pred HHHHhcCCCCCCCCChHHHHHH
Q 008534 385 AYFSSIGCSPQIAMNPAEFLLD 406 (562)
Q Consensus 385 ~~f~~~g~~~~~~~npad~~~~ 406 (562)
..|.+.-.|+|+-+
T Consensus 226 --------~~P~~~fVA~FiG~ 239 (352)
T COG3842 226 --------ERPATRFVADFIGE 239 (352)
T ss_pred --------hCcchHHHHHHhCc
Confidence 33555555666643
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-50 Score=395.72 Aligned_cols=204 Identities=32% Similarity=0.513 Sum_probs=183.1
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhcc
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~ 228 (562)
.+++++|++.| ....+|+||||+|.+||+++|+||||||||||||+|+|... +++|+|.++|.++ ....
T Consensus 3 ~l~i~~v~~~f--------~~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~--p~~G~V~~~g~~v-~~p~ 71 (248)
T COG1116 3 LLEIEGVSKSF--------GGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEK--PTSGEVLLDGRPV-TGPG 71 (248)
T ss_pred eEEEEeeEEEe--------CceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCccc-CCCC
Confidence 58999999998 24789999999999999999999999999999999999543 5689999999998 4456
Q ss_pred CcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHH
Q 008534 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGN 308 (562)
Q Consensus 229 ~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAr 308 (562)
..++||||++.|||.+||+||+.++..... .++++.++++.++|+.+||.+..+. ++++|||||||||+|||
T Consensus 72 ~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~---~~~~e~~~~a~~~L~~VgL~~~~~~-----~P~qLSGGMrQRVaiAR 143 (248)
T COG1116 72 PDIGYVFQEDALLPWLTVLDNVALGLELRG---KSKAEARERAKELLELVGLAGFEDK-----YPHQLSGGMRQRVAIAR 143 (248)
T ss_pred CCEEEEeccCcccchhhHHhhheehhhccc---cchHhHHHHHHHHHHHcCCcchhhc-----CccccChHHHHHHHHHH
Confidence 779999999999999999999999986642 4566677799999999999987765 67899999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCcEEEEEecCCChHHHhcCCEEEEEcCC
Q 008534 309 EIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKG 372 (562)
Q Consensus 309 aLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~Tvii~tH~~~~~i~~~~D~i~vL~~G 372 (562)
||+.+|+||+||||+++||+.++..+.+.|.++.+ .++||++||||..+ ...++|||++|.++
T Consensus 144 AL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~E-Av~LsdRivvl~~~ 207 (248)
T COG1116 144 ALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDE-AVYLADRVVVLSNR 207 (248)
T ss_pred HHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHH-HHhhhCEEEEecCC
Confidence 99999999999999999999999999999999875 48999999999865 56799999999984
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-50 Score=402.78 Aligned_cols=220 Identities=31% Similarity=0.481 Sum_probs=193.5
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCC----
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---- 224 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~---- 224 (562)
.|+++|++|.| +++++|+|+||+|++|++++|+||||||||||||+|+|.+. +.+|+|.++|+++.
T Consensus 2 ~L~~~~ls~~y--------~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~--p~~G~V~l~g~~i~~~~~ 71 (258)
T COG1120 2 MLEVENLSFGY--------GGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLK--PKSGEVLLDGKDIASLSP 71 (258)
T ss_pred eeEEEEEEEEE--------CCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCC--CCCCEEEECCCchhhcCH
Confidence 58999999999 36789999999999999999999999999999999998654 56899999999985
Q ss_pred hhccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCC-CCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHH
Q 008534 225 KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLP-NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (562)
Q Consensus 225 ~~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqR 303 (562)
+++.+++|||||.+.....+||+|-+.++..-+.. .....+++++.+.++|+.+|+.+.+++.+ .+||||||||
T Consensus 72 kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~-----~~LSGGerQr 146 (258)
T COG1120 72 KELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPV-----DELSGGERQR 146 (258)
T ss_pred HHHhhhEEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcc-----cccChhHHHH
Confidence 35678899999998777789999999998543211 11223445567899999999999888754 6899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHH
Q 008534 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (562)
Q Consensus 304 v~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~e 382 (562)
|.|||||+++|+||||||||+.||...+.++++.++++++ +|+|||+++||++- ..++||++++|++|++++.|+|++
T Consensus 147 v~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~-A~ryad~~i~lk~G~i~a~G~p~e 225 (258)
T COG1120 147 VLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNL-AARYADHLILLKDGKIVAQGTPEE 225 (258)
T ss_pred HHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-HHHhCCEEEEEECCeEEeecCcch
Confidence 9999999999999999999999999999999999999984 59999999999875 679999999999999999999988
Q ss_pred HH
Q 008534 383 AM 384 (562)
Q Consensus 383 l~ 384 (562)
++
T Consensus 226 vl 227 (258)
T COG1120 226 VL 227 (258)
T ss_pred hc
Confidence 75
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-49 Score=387.80 Aligned_cols=210 Identities=35% Similarity=0.573 Sum_probs=180.1
Q ss_pred EEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh----
Q 008534 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (562)
Q Consensus 150 l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~---- 225 (562)
++++||++.|... .....+|++|||+|++||+++|+|||||||||||++|.|.. .| ++|.|.++|.++..
T Consensus 2 i~~~~v~k~y~~~----~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld-~p-t~G~v~i~g~d~~~l~~~ 75 (226)
T COG1136 2 IELKNVSKIYGLG----GEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLD-KP-TSGEVLINGKDLTKLSEK 75 (226)
T ss_pred cEEeeeEEEeccC----CcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccc-CC-CCceEEECCEEcCcCCHH
Confidence 6789999988422 12367999999999999999999999999999999999854 34 68999999988752
Q ss_pred ---hc-cCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHH
Q 008534 226 ---SL-KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGER 301 (562)
Q Consensus 226 ---~~-~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqr 301 (562)
.+ +++||||||+.+|+|++||+||+.+++.+.. ........++.++++.+||.+..+. .++.+||||||
T Consensus 76 ~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~---~~~~~~~~~~~~l~~~lgl~~~~~~----~~p~eLSGGqq 148 (226)
T COG1136 76 ELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAG---KSAGRRKRAAEELLEVLGLEDRLLK----KKPSELSGGQQ 148 (226)
T ss_pred HHHHHHHHhEEEECccCCCCCCCCHHHHHHhHHHHcC---CChhHHHHHHHHHHHhcCChhhhcc----CCchhcCHHHH
Confidence 23 4679999999999999999999998775542 2232556678889999999866552 24689999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeE
Q 008534 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374 (562)
Q Consensus 302 qRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~i 374 (562)
|||+|||||+.+|+|||.||||.+||+.+...|++.|++++++ |+|||++|||+. +...|||++.|.+|++
T Consensus 149 QRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~--lA~~~dr~i~l~dG~~ 220 (226)
T COG1136 149 QRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPE--LAKYADRVIELKDGKI 220 (226)
T ss_pred HHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHH--HHHhCCEEEEEeCCee
Confidence 9999999999999999999999999999999999999999865 999999999964 6789999999999994
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-49 Score=393.22 Aligned_cols=219 Identities=31% Similarity=0.551 Sum_probs=189.7
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhc
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~ 227 (562)
..|+++|+++.|. ..++|+||||+|++|++++|+||||||||||+|+|+|.+. +.+|+|.++|.+..+..
T Consensus 3 ~~i~v~nl~v~y~--------~~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~--p~~G~i~~~g~~~~~~~ 72 (254)
T COG1121 3 PMIEVENLTVSYG--------NRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLK--PSSGEIKIFGKPVRKRR 72 (254)
T ss_pred cEEEEeeeEEEEC--------CEeeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCc--CCcceEEEccccccccc
Confidence 3699999999992 2269999999999999999999999999999999999664 56899999999876532
Q ss_pred -cCcEEEEccC---CCCCCCCCHHHHHHHHHhhCCC--CCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHH
Q 008534 228 -KSKIGFVTQD---DVLFPHLTVKETLTYAALLRLP--NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGER 301 (562)
Q Consensus 228 -~~~igyV~Q~---~~l~~~lTV~enl~~~~~~~~~--~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqr 301 (562)
+.+||||||. +.-|| +||+|.+..+...+.. ... .+.+.+.+.++|+.+|+.+..|..+| +|||||+
T Consensus 73 ~~~~IgYVPQ~~~~d~~fP-~tV~d~V~~g~~~~~g~~~~~-~~~d~~~v~~aL~~Vgm~~~~~r~i~-----~LSGGQ~ 145 (254)
T COG1121 73 KRLRIGYVPQKSSVDRSFP-ITVKDVVLLGRYGKKGWFRRL-NKKDKEKVDEALERVGMEDLRDRQIG-----ELSGGQK 145 (254)
T ss_pred cCCeEEEcCcccccCCCCC-cCHHHHHHccCcccccccccc-cHHHHHHHHHHHHHcCchhhhCCccc-----ccCcHHH
Confidence 4679999995 45577 7999999987543321 112 23346789999999999999988765 8999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChH
Q 008534 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKAS 381 (562)
Q Consensus 302 qRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~ 381 (562)
|||.|||||+.+|++|+|||||+|+|+.++..|++.|++++++|+||++|+||+.. +.++||+|+.| ++++++.|+++
T Consensus 146 QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~-v~~~~D~vi~L-n~~~~~~G~~~ 223 (254)
T COG1121 146 QRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGL-VMAYFDRVICL-NRHLIASGPPE 223 (254)
T ss_pred HHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHH-hHhhCCEEEEE-cCeeEeccChh
Confidence 99999999999999999999999999999999999999999889999999999875 78999999999 68899999999
Q ss_pred HHHH
Q 008534 382 EAMA 385 (562)
Q Consensus 382 el~~ 385 (562)
++..
T Consensus 224 ~~~~ 227 (254)
T COG1121 224 EVLT 227 (254)
T ss_pred hccC
Confidence 8753
|
|
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-51 Score=453.62 Aligned_cols=356 Identities=24% Similarity=0.319 Sum_probs=256.1
Q ss_pred hHHHHHHHHHHHHHHHHhhcCCCccccccccCCCCcchhhhhhhhhhhcCCCcccccccceeeeeecccccccccccccc
Q 008534 8 TSLARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSS 87 (562)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (562)
.+..+..++..++..+...|.....+++++|+.+..+.+++.+..........+.....+...........-..+.-+..
T Consensus 177 ~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (567)
T COG1132 177 RKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAPLMLLLSSLGTVLVLAL 256 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777788899999999999999999999999999998888876655544321100111111000000000111223456
Q ss_pred hhhhhhhhhhhhhhhcccccCCCCccccccC----------------CCCCCCCCccccccccCCCCCCCCCCCCceeEE
Q 008534 88 GAALSRASSASLGLSFSFTGFTMPPDEIADS----------------KPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLK 151 (562)
Q Consensus 88 g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 151 (562)
|+.+...+..+.|.+.+|..+.......... +.+...+.++.+.... . ........++
T Consensus 257 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~----~--~~~~~~~~I~ 330 (567)
T COG1132 257 GGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVEDPP----D--PLKDTIGSIE 330 (567)
T ss_pred HHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCC----C--CCCCCCCeEE
Confidence 6666666667777766666544332221111 1111111111111110 0 0111223599
Q ss_pred EEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCC----hhc
Q 008534 152 FTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS----KSL 227 (562)
Q Consensus 152 ~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~----~~~ 227 (562)
|+||+|.|+ +++++|+|+||+++|||.+||+||||||||||+++|+| +++| .+|+|.+||.+++ ..+
T Consensus 331 f~~vsf~y~-------~~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r-~~~~-~~G~I~idg~dI~~i~~~~l 401 (567)
T COG1132 331 FENVSFSYP-------GKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLR-LYDP-TSGEILIDGIDIRDISLDSL 401 (567)
T ss_pred EEEEEEEcC-------CCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhc-cCCC-CCCeEEECCEehhhcCHHHH
Confidence 999999982 25689999999999999999999999999999999996 6655 5899999999986 367
Q ss_pred cCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHH
Q 008534 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (562)
Q Consensus 228 ~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA 307 (562)
|++|+||+|++.+|. .||+|||.++......+.+.++.+.+.+++.+..+ ++++||.+|+. ...||||||||++||
T Consensus 402 r~~I~~V~Qd~~LF~-~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~l--p~g~dt~vge~-G~~LSgGQrQrlaiA 477 (567)
T COG1132 402 RKRIGIVSQDPLLFS-GTIRENIALGRPDATDEEIEEALKLANAHEFIANL--PDGYDTIVGER-GVNLSGGQRQRLAIA 477 (567)
T ss_pred HHhccEEcccceeec-ccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhC--cccccceecCC-CccCCHHHHHHHHHH
Confidence 999999999999998 69999999984321111122222333345556554 78899999944 456999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHHH
Q 008534 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (562)
Q Consensus 308 raLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~~ 385 (562)
|||+++|+||+||||||+||+.++..|.+.++++. +++|+|+|+|++++ + +.||+|+||++|++++.|+|+|+++
T Consensus 478 Rall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~-~~rT~iiIaHRlst-i-~~aD~IiVl~~G~i~e~G~h~eLl~ 552 (567)
T COG1132 478 RALLRNPPILILDEATSALDTETEALIQDALKKLL-KGRTTLIIAHRLST-I-KNADRIIVLDNGRIVERGTHEELLA 552 (567)
T ss_pred HHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHh-cCCEEEEEeccHhH-H-HhCCEEEEEECCEEEEecCHHHHHH
Confidence 99999999999999999999999999999999887 57899999999975 4 5599999999999999999999986
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-49 Score=383.80 Aligned_cols=223 Identities=28% Similarity=0.498 Sum_probs=194.6
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCC----
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---- 224 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~---- 224 (562)
+|+++||+..|+ .++.+|+||||+|++||++||+||||||||||||+|.| +.+ +++|+|.+||.++.
T Consensus 3 ~i~~~nl~k~yp-------~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lng-l~d-~t~G~i~~~g~~i~~~~~ 73 (258)
T COG3638 3 MIEVKNLSKTYP-------GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNG-LVD-PTSGEILFNGVQITKLKG 73 (258)
T ss_pred eEEEeeeeeecC-------CCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhc-ccC-CCcceEEecccchhccch
Confidence 699999999983 36789999999999999999999999999999999998 444 45899999998764
Q ss_pred ---hhccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCC-----CccHHHHHHHHHHHHHHcCCCccccccccCcccCCC
Q 008534 225 ---KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPN-----TLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGV 296 (562)
Q Consensus 225 ---~~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~-----~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~L 296 (562)
+.+|++|||+||+++|.+.++|.+|+..+...+.+. +...++.+..+.+.|+++|+.+.+.++. .+|
T Consensus 74 k~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra-----~~L 148 (258)
T COG3638 74 KELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRA-----STL 148 (258)
T ss_pred HHHHHHHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHh-----ccC
Confidence 246889999999999999999999999886443321 1233455667889999999988777654 589
Q ss_pred ChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCcEEEEEecCCChHHHhcCCEEEEEcCCeEE
Q 008534 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLL 375 (562)
Q Consensus 297 SGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv 375 (562)
||||+|||+|||||+.+|+|+|.|||+++|||.++..+++.|+++++ .|.|||++.|+... +.++||||+-|++|+|+
T Consensus 149 SGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdl-A~~Y~~Riigl~~G~iv 227 (258)
T COG3638 149 SGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDL-AKKYADRIIGLKAGRIV 227 (258)
T ss_pred CcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHH-HHHHHhhheEecCCcEE
Confidence 99999999999999999999999999999999999999999999975 59999999999865 67899999999999999
Q ss_pred EecChHHHHHH
Q 008534 376 YFGKASEAMAY 386 (562)
Q Consensus 376 ~~G~~~el~~~ 386 (562)
|.|+++++-+.
T Consensus 228 fDg~~~el~~~ 238 (258)
T COG3638 228 FDGPASELTDE 238 (258)
T ss_pred EeCChhhhhHH
Confidence 99999887544
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-50 Score=459.38 Aligned_cols=351 Identities=20% Similarity=0.234 Sum_probs=247.8
Q ss_pred HHHHHHHHHHHHHHHhhcCCCccccccccCCCCcchhhhhhhhhhhcCCCcccccccceeeeeecccccccccccccchh
Q 008534 10 LARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSGA 89 (562)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 89 (562)
..++.++.-++..+...|.+.+.+|+|+++.+....+++.+..........+.....+.....+...+.-..+.-++.|+
T Consensus 302 ~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~ 381 (686)
T TIGR03797 302 KERRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELSAQRIENLLTVFNAVLPVLTSAALFAAAI 381 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666677788889999999999999999888888776665544432221111111101111122222333456788
Q ss_pred hhhhhhhhhhhhhcccccCCCCccccccCCCC----------CCCCCccccccccCCCCCCCCCCCCceeEEEEeEEEEE
Q 008534 90 ALSRASSASLGLSFSFTGFTMPPDEIADSKPF----------SDDDIPEDIEAGTRERPKFQTEPTLPIYLKFTDVTYKV 159 (562)
Q Consensus 90 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~nvs~~y 159 (562)
.++..+..+.|.++++..+............. +..++...++............+.....++|+||+|+|
T Consensus 382 ~lv~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~~~~~~~~~~I~~~nvsf~Y 461 (686)
T TIGR03797 382 SLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPEVDEAKTDPGKLSGAIEVDRVTFRY 461 (686)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCcCCCCCCCceEEEEEEEEEc
Confidence 88888888888887776543222111110000 00001111111000000000011112369999999998
Q ss_pred eecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh----hccCcEEEEc
Q 008534 160 ILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVT 235 (562)
Q Consensus 160 ~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~----~~~~~igyV~ 235 (562)
+ ..++++|+|+||+|++||.+||+||||||||||+|+|+|. ++ +.+|+|.+||+++.. .+|++||||+
T Consensus 462 ~------~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl-~~-p~~G~I~idg~~i~~~~~~~lr~~i~~v~ 533 (686)
T TIGR03797 462 R------PDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGF-ET-PESGSVFYDGQDLAGLDVQAVRRQLGVVL 533 (686)
T ss_pred C------CCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCC-CC-CCCCEEEECCEEcCcCCHHHHHhccEEEc
Confidence 3 2346799999999999999999999999999999999984 44 458999999999863 5789999999
Q ss_pred cCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHc-------CCCccccccccCcccCCCChhHHHHHHHHH
Q 008534 236 QDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINEL-------GLERCQDTMIGGSFVRGVSGGERKRVCIGN 308 (562)
Q Consensus 236 Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~l-------gL~~~~~t~vg~~~~~~LSGGqrqRv~IAr 308 (562)
|++.+|+. |++|||.++.. .+++ ++.++++.. .+++.+||.+|+. ...||||||||++|||
T Consensus 534 Q~~~lf~g-TI~eNi~~~~~------~~~e----~i~~al~~a~l~~~i~~lp~G~dt~ige~-G~~LSGGQrQRialAR 601 (686)
T TIGR03797 534 QNGRLMSG-SIFENIAGGAP------LTLD----EAWEAARMAGLAEDIRAMPMGMHTVISEG-GGTLSGGQRQRLLIAR 601 (686)
T ss_pred cCCccCcc-cHHHHHhcCCC------CCHH----HHHHHHHHcCcHHHHHhccccccccccCC-CCCCCHHHHHHHHHHH
Confidence 99999975 99999998632 2222 233333333 3466789998865 4679999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHHH
Q 008534 309 EIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (562)
Q Consensus 309 aLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~~ 385 (562)
||+++|+|||||||||+||+.++..+.+.|+++ ++|+|++||+++. .+.||+|++|++|++++.|+++++++
T Consensus 602 All~~p~iLiLDEpTS~LD~~te~~i~~~L~~~---~~T~IiItHr~~~--i~~~D~Iivl~~G~iv~~G~~~~Ll~ 673 (686)
T TIGR03797 602 ALVRKPRILLFDEATSALDNRTQAIVSESLERL---KVTRIVIAHRLST--IRNADRIYVLDAGRVVQQGTYDELMA 673 (686)
T ss_pred HHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh---CCeEEEEecChHH--HHcCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999999999999999999999999876 5799999999864 57799999999999999999999864
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-50 Score=463.50 Aligned_cols=354 Identities=22% Similarity=0.334 Sum_probs=255.1
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCccccccccCCCCcchhhhhhhhhhhcCCCcccccccceeeeeecccccccccccccch
Q 008534 9 SLARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSG 88 (562)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 88 (562)
++.++.++..++..+...|.+++.+|||.|+.+..+.++|.+.+........+....++.+.........-..+..+..|
T Consensus 327 ~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~g 406 (711)
T TIGR00958 327 LLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKRKALAYAGYLWTTSVLGMLIQVLVLYYG 406 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667778888899999999999999999999999999999888776554333222222221111122222334455688
Q ss_pred hhhhhhhhhhhhhhcccccCCCCccccccCCCCCC----------CCCccccccccCCCCCCCCCC-CCceeEEEEeEEE
Q 008534 89 AALSRASSASLGLSFSFTGFTMPPDEIADSKPFSD----------DDIPEDIEAGTRERPKFQTEP-TLPIYLKFTDVTY 157 (562)
Q Consensus 89 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~nvs~ 157 (562)
+.++..+..+.|.++++..+.....+......... .++.+-++..+...+.....+ .....|+|+||+|
T Consensus 407 ~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~I~~~nVsf 486 (711)
T TIGR00958 407 GQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPLTGTLAPLNLEGLIEFQDVSF 486 (711)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCCeEEEEEEEE
Confidence 88888888899988887776543322211100000 000011111100000000011 1223699999999
Q ss_pred EEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh----hccCcEEE
Q 008534 158 KVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGF 233 (562)
Q Consensus 158 ~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~----~~~~~igy 233 (562)
+|+ ..+++++|+|+||+|+|||.+||+||||||||||+++|+|. ++ +.+|+|.+||+|+.+ .++++|+|
T Consensus 487 ~Y~-----~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl-~~-p~~G~I~idg~~i~~~~~~~lr~~i~~ 559 (711)
T TIGR00958 487 SYP-----NRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNL-YQ-PTGGQVLLDGVPLVQYDHHYLHRQVAL 559 (711)
T ss_pred ECC-----CCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhc-cC-CCCCEEEECCEEHHhcCHHHHHhhceE
Confidence 983 12246799999999999999999999999999999999984 54 458999999999853 56889999
Q ss_pred EccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcC-------CCccccccccCcccCCCChhHHHHHHH
Q 008534 234 VTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG-------LERCQDTMIGGSFVRGVSGGERKRVCI 306 (562)
Q Consensus 234 V~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~t~vg~~~~~~LSGGqrqRv~I 306 (562)
|+|++.+|+ .|++|||.++.. ..+++ ++.++++..+ +++..||.+|+. ...||||||||++|
T Consensus 560 v~Q~~~lF~-gTIreNI~~g~~-----~~~~e----~i~~al~~a~l~~~i~~lp~GldT~ige~-G~~LSGGQkQRlal 628 (711)
T TIGR00958 560 VGQEPVLFS-GSVRENIAYGLT-----DTPDE----EIMAAAKAANAHDFIMEFPNGYDTEVGEK-GSQLSGGQKQRIAI 628 (711)
T ss_pred EecCccccc-cCHHHHHhcCCC-----CCCHH----HHHHHHHHcCCHHHHHhCCCccCCcccCC-CCcCCHHHHHHHHH
Confidence 999999997 599999998632 12222 2333333333 466789988865 46799999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHHH
Q 008534 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (562)
Q Consensus 307 AraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~~ 385 (562)
||||+++|+|||||||||+||+.++..+.+ .. ...++|+|+|||+++. ...||+|++|++|+|++.|+|+++++
T Consensus 629 ARALl~~p~ILILDEpTSaLD~~te~~i~~-~~--~~~~~TvIiItHrl~~--i~~aD~IivL~~G~ive~Gt~~eL~~ 702 (711)
T TIGR00958 629 ARALVRKPRVLILDEATSALDAECEQLLQE-SR--SRASRTVLLIAHRLST--VERADQILVLKKGSVVEMGTHKQLME 702 (711)
T ss_pred HHHHhcCCCEEEEEccccccCHHHHHHHHH-hh--ccCCCeEEEEeccHHH--HHhCCEEEEEECCEEEEeeCHHHHHh
Confidence 999999999999999999999999999988 22 2358999999999864 57799999999999999999999875
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-50 Score=449.50 Aligned_cols=215 Identities=26% Similarity=0.430 Sum_probs=183.4
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCC----
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---- 224 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~---- 224 (562)
.++|+||+|.|. +++++|+|+||+|++|+.+||+||||||||||+++|+| ++ |. +|+|.+||.++.
T Consensus 349 ~i~~~~vsf~~~-------~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g-~~-p~-~G~I~i~g~~i~~~~~ 418 (588)
T PRK11174 349 TIEAEDLEILSP-------DGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLG-FL-PY-QGSLKINGIELRELDP 418 (588)
T ss_pred eEEEEeeEEecc-------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhc-CC-CC-CcEEEECCEecccCCH
Confidence 599999998662 24579999999999999999999999999999999998 45 54 899999999885
Q ss_pred hhccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHH-----HHHHHHHHcCCCccccccccCcccCCCChh
Q 008534 225 KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEK-----RAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (562)
Q Consensus 225 ~~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~-----~v~~~l~~lgL~~~~~t~vg~~~~~~LSGG 299 (562)
+.+|++|+||+|++.+|+. |++|||.++. + ..++++..+ .+++.++ .|++.+||.+|+. ...||||
T Consensus 419 ~~lr~~i~~v~Q~~~LF~~-TI~eNI~~g~----~-~~~~eei~~al~~a~l~~~i~--~lp~G~dT~vge~-G~~LSGG 489 (588)
T PRK11174 419 ESWRKHLSWVGQNPQLPHG-TLRDNVLLGN----P-DASDEQLQQALENAWVSEFLP--LLPQGLDTPIGDQ-AAGLSVG 489 (588)
T ss_pred HHHHhheEEecCCCcCCCc-CHHHHhhcCC----C-CCCHHHHHHHHHHhCHHHHHH--hcccccccccccC-CCCCCHH
Confidence 3578899999999999975 9999999873 1 223333222 2334444 3577889999876 4569999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecC
Q 008534 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (562)
Q Consensus 300 qrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (562)
||||++|||||+++|+|||||||||+||+.++..|.+.|+++. +++|+|++||+++. ...||+|++|++|++++.|+
T Consensus 490 QrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvIiItHrl~~--i~~aD~Iivl~~G~i~e~G~ 566 (588)
T PRK11174 490 QAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAAS-RRQTTLMVTHQLED--LAQWDQIWVMQDGQIVQQGD 566 (588)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEecChHH--HHhCCEEEEEeCCeEeecCC
Confidence 9999999999999999999999999999999999999999886 48999999999864 57799999999999999999
Q ss_pred hHHHHH
Q 008534 380 ASEAMA 385 (562)
Q Consensus 380 ~~el~~ 385 (562)
|+++++
T Consensus 567 ~~eL~~ 572 (588)
T PRK11174 567 YAELSQ 572 (588)
T ss_pred HHHHHh
Confidence 999874
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-49 Score=393.07 Aligned_cols=220 Identities=28% Similarity=0.513 Sum_probs=195.4
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCE---eCCh
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDH---PYSK 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~---~~~~ 225 (562)
+|.++|+++.+ +...+++|||++|+.||++||+|||||||||||++|+|+.. +++|.|.+||. +.++
T Consensus 2 ~i~i~~~~~~~--------~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~--p~~G~I~~~~~~l~D~~~ 71 (345)
T COG1118 2 SIRINNVKKRF--------GAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLET--PDAGRIRLNGRVLFDVSN 71 (345)
T ss_pred ceeehhhhhhc--------ccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCC--CCCceEEECCEeccchhc
Confidence 57888898877 35679999999999999999999999999999999999653 56899999999 5443
Q ss_pred --hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHH
Q 008534 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (562)
Q Consensus 226 --~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqR 303 (562)
...++||||||+..+|++|||.+||+|+...+ ....++...+.++.++|+.+.|++..+ +++.+||||||||
T Consensus 72 ~~~~~R~VGfvFQ~YALF~HmtVa~NIAFGl~~~-~~~p~~~~~r~rv~elL~lvqL~~la~-----ryP~QLSGGQrQR 145 (345)
T COG1118 72 LAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVR-KERPSEAEIRARVEELLRLVQLEGLAD-----RYPAQLSGGQRQR 145 (345)
T ss_pred cchhhcceeEEEechhhcccchHHhhhhhccccc-ccCCChhhHHHHHHHHHHHhcccchhh-----cCchhcChHHHHH
Confidence 23478999999999999999999999998765 223456778889999999999987655 4678999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHH
Q 008534 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (562)
Q Consensus 304 v~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~e 382 (562)
|++||||+.+|++||||||+++||...+.++.+.|+++.++ |.|+|++|||+. +++++||||++|++|+|...|+++|
T Consensus 146 VALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~e-ea~~ladrvvvl~~G~Ieqvg~p~e 224 (345)
T COG1118 146 VALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQE-EALELADRVVVLNQGRIEQVGPPDE 224 (345)
T ss_pred HHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHH-HHHhhcceEEEecCCeeeeeCCHHH
Confidence 99999999999999999999999999999999999999876 999999999975 5889999999999999999999999
Q ss_pred HHH
Q 008534 383 AMA 385 (562)
Q Consensus 383 l~~ 385 (562)
+.+
T Consensus 225 v~~ 227 (345)
T COG1118 225 VYD 227 (345)
T ss_pred Hhc
Confidence 853
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-48 Score=399.54 Aligned_cols=220 Identities=27% Similarity=0.426 Sum_probs=194.1
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh--
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~-- 225 (562)
..++++||+++| +++.+|+||||+|++||+++|+||||||||||+++|+|.+. +++|+|.++|.++..
T Consensus 6 ~~i~i~~l~k~~--------~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~--p~~G~v~i~G~~~~~~~ 75 (306)
T PRK13537 6 APIDFRNVEKRY--------GDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTH--PDAGSISLCGEPVPSRA 75 (306)
T ss_pred ceEEEEeEEEEE--------CCeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEecccch
Confidence 369999999998 24679999999999999999999999999999999999653 568999999998753
Q ss_pred -hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHH
Q 008534 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (562)
Q Consensus 226 -~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 304 (562)
..+++||||||++.+++.+||+||+.|.+..+ ..+..+...++.++++.++|.+..++.+ ++|||||||||
T Consensus 76 ~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl 147 (306)
T PRK13537 76 RHARQRVGVVPQFDNLDPDFTVRENLLVFGRYF---GLSAAAARALVPPLLEFAKLENKADAKV-----GELSGGMKRRL 147 (306)
T ss_pred HHHHhcEEEEeccCcCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchHhcCch-----hhCCHHHHHHH
Confidence 35678999999999999999999999866543 2234444567889999999988777754 58999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHH
Q 008534 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (562)
Q Consensus 305 ~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~ 384 (562)
+||+||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. ++.++||+|++|++|++++.|+++++.
T Consensus 148 ~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~-e~~~~~d~i~il~~G~i~~~g~~~~l~ 226 (306)
T PRK13537 148 TLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFME-EAERLCDRLCVIEEGRKIAEGAPHALI 226 (306)
T ss_pred HHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 9999999999999999999999999999999999999877999999999976 577899999999999999999999986
Q ss_pred HH
Q 008534 385 AY 386 (562)
Q Consensus 385 ~~ 386 (562)
..
T Consensus 227 ~~ 228 (306)
T PRK13537 227 ES 228 (306)
T ss_pred hc
Confidence 43
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-50 Score=485.12 Aligned_cols=354 Identities=20% Similarity=0.258 Sum_probs=253.9
Q ss_pred HHHHHHHHHHhhcCCCccccccccCCCCcchhhhhhhhhhhcCCCcccccccceeeeeecccccccccccccchhhhhhh
Q 008534 15 SDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSGAALSRA 94 (562)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 94 (562)
++.+++.+..++|.+...+|||+|+.+....++|.+..........+.....+.....+.+.+.-..+.-++.|+.++..
T Consensus 1015 ~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~lv~~ 1094 (1466)
T PTZ00265 1015 DEIFKDPSFLIQEAFYNMNTVIIYGLEDYFCNLIEKAIDYSNKGQKRKTLVNSMLWGFSQSAQLFINSFAYWFGSFLIRR 1094 (1466)
T ss_pred HHHHHHHHHHHHHHHhcHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34467788899999999999999999999999998877655433222222222221112233333344556789999988
Q ss_pred hhhhhhhhcccccCCCCc----------------cccccCCCCCCCCCccccccccCCCCCCCCCCCCceeEEEEeEEEE
Q 008534 95 SSASLGLSFSFTGFTMPP----------------DEIADSKPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLKFTDVTYK 158 (562)
Q Consensus 95 ~~~~~g~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~nvs~~ 158 (562)
+..+.|.++.+..+.+.. ...+..+.+...+.++.++............+.....|+|+||+|+
T Consensus 1095 g~it~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~a~~a~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~ 1174 (1466)
T PTZ00265 1095 GTILVDDFMKSLFTFLFTGSYAGKLMSLKGDSENAKLSFEKYYPLIIRKSNIDVRDNGGIRIKNKNDIKGKIEIMDVNFR 1174 (1466)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCcCCCCCCcccccccCCCCCceEEEEEEEEE
Confidence 888888766643211100 0111111111111111110000000000000112236999999999
Q ss_pred EeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC---------------------------
Q 008534 159 VILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPT--------------------------- 211 (562)
Q Consensus 159 y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~--------------------------- 211 (562)
|+. +++++||+|+||+|++|+.+||+||||||||||+++|+| +++|.
T Consensus 1175 Y~~-----~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r-~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1248 (1466)
T PTZ00265 1175 YIS-----RPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMR-FYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQ 1248 (1466)
T ss_pred CCC-----CCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHH-hCCCcccccccccccccccccccccccccccc
Confidence 831 224579999999999999999999999999999999997 56652
Q ss_pred --------------------------CccEEEECCEeCC----hhccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCC
Q 008534 212 --------------------------VGGSITYNDHPYS----KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNT 261 (562)
Q Consensus 212 --------------------------~~G~I~i~G~~~~----~~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~ 261 (562)
.+|+|++||.++. +.+|++||||+|+|.||+ .||+|||.|+.. .
T Consensus 1249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~-gTIreNI~~g~~-----~ 1322 (1466)
T PTZ00265 1249 NVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFN-MSIYENIKFGKE-----D 1322 (1466)
T ss_pred ccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCcccc-ccHHHHHhcCCC-----C
Confidence 5899999999985 367899999999999996 699999999732 1
Q ss_pred ccHHHHH-----HHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH
Q 008534 262 LTKQQKE-----KRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQ 336 (562)
Q Consensus 262 ~~~~~~~-----~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~ 336 (562)
.++++.+ +.+++++. .|++.+||.+|.. ...||||||||++|||||+++|+|||||||||+||+.++..|.+
T Consensus 1323 at~eeI~~A~k~A~l~~fI~--~LP~GydT~VGe~-G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~ 1399 (1466)
T PTZ00265 1323 ATREDVKRACKFAAIDEFIE--SLPNKYDTNVGPY-GKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEK 1399 (1466)
T ss_pred CCHHHHHHHHHHcCCHHHHH--hCccccCCccCCC-CCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHH
Confidence 2333322 23344554 4688999999964 45699999999999999999999999999999999999999999
Q ss_pred HHHHHH-HCCcEEEEEecCCChHHHhcCCEEEEEcC----CeEE-EecChHHHHH
Q 008534 337 MLQDIA-EAGKTVVTTIHQPSSRLFHKFDKLILLGK----GSLL-YFGKASEAMA 385 (562)
Q Consensus 337 ~L~~l~-~~g~Tvii~tH~~~~~i~~~~D~i~vL~~----G~iv-~~G~~~el~~ 385 (562)
.|.++. .+++|+|+|+|+++. .+.||+|++|++ |+++ +.|+|+|+++
T Consensus 1400 ~L~~~~~~~~~TvIiIaHRlst--i~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl~ 1452 (1466)
T PTZ00265 1400 TIVDIKDKADKTIITIAHRIAS--IKRSDKIVVFNNPDRTGSFVQAHGTHEELLS 1452 (1466)
T ss_pred HHHHHhccCCCEEEEEechHHH--HHhCCEEEEEeCCCCCCCEEEEecCHHHHHh
Confidence 999986 358999999999864 578999999999 9955 8999999974
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-49 Score=372.48 Aligned_cols=220 Identities=28% Similarity=0.459 Sum_probs=199.7
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
+|++.+++++|. ....+++||||+++.||+++|+|||||||||+|++|++.+. |++|.|++||.+..+
T Consensus 1 Ml~v~~l~K~y~-------~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~--P~~G~v~idg~d~~~~p~ 71 (245)
T COG4555 1 MLEVTDLTKSYG-------SKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLI--PDSGKVTIDGVDTVRDPS 71 (245)
T ss_pred Ceeeeehhhhcc-------CHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhcc--CCCceEEEeecccccChH
Confidence 478899999882 13349999999999999999999999999999999999765 568999999998753
Q ss_pred hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHH
Q 008534 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC 305 (562)
Q Consensus 226 ~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ 305 (562)
..|++||.++.+.-+|..||++|||.|.+++. .+.+.+.++++.++.+.|+|.++.|+.+| ++|.||||||+
T Consensus 72 ~vrr~IGVl~~e~glY~RlT~rEnl~~Fa~L~---~l~~~~~kari~~l~k~l~l~~~~~rRv~-----~~S~G~kqkV~ 143 (245)
T COG4555 72 FVRRKIGVLFGERGLYARLTARENLKYFARLN---GLSRKEIKARIAELSKRLQLLEYLDRRVG-----EFSTGMKQKVA 143 (245)
T ss_pred HHhhhcceecCCcChhhhhhHHHHHHHHHHHh---hhhhhHHHHHHHHHHHHhChHHHHHHHHh-----hhchhhHHHHH
Confidence 47899999998888999999999999988775 46778888999999999999999999875 79999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHHH
Q 008534 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (562)
Q Consensus 306 IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~~ 385 (562)
|||||+++|++++|||||||||..+...+.+.++++.++|++||++||.+. ++..+||+|++|++|++|+.|+.+++..
T Consensus 144 iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~-EvealCDrvivlh~Gevv~~gs~~~l~~ 222 (245)
T COG4555 144 IARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQ-EVEALCDRVIVLHKGEVVLEGSIEALDA 222 (245)
T ss_pred HHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHH-HHHHhhheEEEEecCcEEEcCCHHHHHH
Confidence 999999999999999999999999999999999999988999999999975 5888999999999999999999988765
Q ss_pred H
Q 008534 386 Y 386 (562)
Q Consensus 386 ~ 386 (562)
.
T Consensus 223 r 223 (245)
T COG4555 223 R 223 (245)
T ss_pred H
Confidence 3
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-48 Score=403.33 Aligned_cols=221 Identities=24% Similarity=0.409 Sum_probs=192.2
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
+|+++||+++|.. ....+++|+||||+|++||+++|+||||||||||+++|+|... +++|+|.++|.++..
T Consensus 1 mI~~~~lsk~y~~----~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~--p~~G~I~i~G~~i~~~~~ 74 (343)
T TIGR02314 1 MIKLSNITKVFHQ----GTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER--PTSGSVIVDGQDLTTLSN 74 (343)
T ss_pred CEEEEEEEEEECC----CCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEECCcCCH
Confidence 4789999999831 1123579999999999999999999999999999999999543 568999999998752
Q ss_pred ----hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHH
Q 008534 226 ----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGER 301 (562)
Q Consensus 226 ----~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqr 301 (562)
..+++||||||++.+|+.+||+||+.|+.... ..++.+..+++.++++.+||.+..+.. +.+||||||
T Consensus 75 ~~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~v~e~l~~vgL~~~~~~~-----~~~LSgGqk 146 (343)
T TIGR02314 75 SELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEIKRKVTELLALVGLGDKHDSY-----PSNLSGGQK 146 (343)
T ss_pred HHHHHHhcCEEEEECCccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCC-----hhhCCHHHH
Confidence 24678999999999999999999999976532 234556667889999999998876654 578999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecCh
Q 008534 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 380 (562)
Q Consensus 302 qRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~ 380 (562)
|||+|||||+.+|++|||||||++||+.++..+++.|+++.++ |.|||++||++. .+.++||+|++|++|++++.|++
T Consensus 147 QRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~-~v~~~~d~v~vl~~G~iv~~g~~ 225 (343)
T TIGR02314 147 QRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMD-VVKRICDCVAVISNGELIEQGTV 225 (343)
T ss_pred HHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCH
Confidence 9999999999999999999999999999999999999999865 899999999975 46789999999999999999999
Q ss_pred HHHH
Q 008534 381 SEAM 384 (562)
Q Consensus 381 ~el~ 384 (562)
+++.
T Consensus 226 ~~v~ 229 (343)
T TIGR02314 226 SEIF 229 (343)
T ss_pred HHHH
Confidence 8874
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-48 Score=366.96 Aligned_cols=213 Identities=29% Similarity=0.472 Sum_probs=190.9
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
+|+|+||++.|. . ++++|+||||+|++||++-|+||||||||||||+|.+... ++.|+|+++|.++.+
T Consensus 1 mI~f~~V~k~Y~------~-g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~--pt~G~i~~~~~dl~~l~~ 71 (223)
T COG2884 1 MIRFENVSKAYP------G-GREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEER--PTRGKILVNGHDLSRLKG 71 (223)
T ss_pred CeeehhhhhhcC------C-CchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhc--CCCceEEECCeecccccc
Confidence 489999999982 2 4779999999999999999999999999999999998543 568999999999853
Q ss_pred ----hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHH
Q 008534 226 ----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGER 301 (562)
Q Consensus 226 ----~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqr 301 (562)
.+|++||+||||..|.++.||+||++|+.... +.++.+.++++.++|+.+||.+..+. .+.+||||||
T Consensus 72 ~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~---G~~~~~i~~rV~~~L~~VgL~~k~~~-----lP~~LSGGEQ 143 (223)
T COG2884 72 REIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVI---GKPPREIRRRVSEVLDLVGLKHKARA-----LPSQLSGGEQ 143 (223)
T ss_pred cccchhhheeeeEeeeccccccchHhhhhhhhhhcc---CCCHHHHHHHHHHHHHHhccchhhhc-----CccccCchHH
Confidence 47899999999999999999999999998664 45678888999999999999987775 4679999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecC
Q 008534 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (562)
Q Consensus 302 qRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (562)
|||+||||++.+|++||.||||.+|||..+.+|++.+.++.+.|.|||+.||+.. .+..+-.|++.|++|+++....
T Consensus 144 QRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~-lv~~~~~rvl~l~~Grl~~d~~ 220 (223)
T COG2884 144 QRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLE-LVNRMRHRVLALEDGRLVRDES 220 (223)
T ss_pred HHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHH-HHHhccCcEEEEeCCEEEeccc
Confidence 9999999999999999999999999999999999999999989999999999954 4556778999999999987654
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-48 Score=373.12 Aligned_cols=232 Identities=24% Similarity=0.457 Sum_probs=194.7
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC----CCccEEEECCEeC
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP----TVGGSITYNDHPY 223 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~----~~~G~I~i~G~~~ 223 (562)
..++++||++.| +++.+|+|||+.|++++++||||||||||||||+++. |..+. ..+|+|.++|+++
T Consensus 6 ~~~~~~~l~~yY--------g~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lN-Rmndl~~~~r~~G~v~~~g~ni 76 (253)
T COG1117 6 PAIEVRDLNLYY--------GDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLN-RMNDLIPGARVEGEVLLDGKNI 76 (253)
T ss_pred ceeEecceeEEE--------CchhhhccCceeccCCceEEEECCCCcCHHHHHHHHH-hhcccCcCceEEEEEEECCeec
Confidence 368999999998 4778999999999999999999999999999999999 44432 2569999999998
Q ss_pred Ch------hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCC-ccccccccCcccCCC
Q 008534 224 SK------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGV 296 (562)
Q Consensus 224 ~~------~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~~L 296 (562)
.. .+|++||+|||.|+.|| +|++||+.|+.++.. ...++.++.++..|+...|= +..|.+ +....+|
T Consensus 77 ~~~~~d~~~lRr~vGMVFQkPnPFp-~SIydNVayG~r~~g---~~~~~ldeiVe~sLk~AaLWdEVKDrL--~~sa~~L 150 (253)
T COG1117 77 YDPKVDVVELRRRVGMVFQKPNPFP-MSIYDNVAYGLRLHG---IKDKELDEIVESSLKKAALWDEVKDRL--HKSALGL 150 (253)
T ss_pred cCCCCCHHHHHHHheeeccCCCCCC-chHHHHHHHhHHhhc---cchHHHHHHHHHHHHHhHhHHHhHHHh--hCCccCC
Confidence 53 57999999999999999 899999999987653 22356677788888776652 222322 2345679
Q ss_pred ChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEE
Q 008534 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (562)
Q Consensus 297 SGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~ 376 (562)
||||+||++|||||+.+|+|||||||||+|||.+..+|-+++.+|++ .-|||++||.+. ...+..|+..++..|++|+
T Consensus 151 SGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~-~yTIviVTHnmq-QAaRvSD~taFf~~G~LvE 228 (253)
T COG1117 151 SGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKK-KYTIVIVTHNMQ-QAARVSDYTAFFYLGELVE 228 (253)
T ss_pred ChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHh-ccEEEEEeCCHH-HHHHHhHhhhhhcccEEEE
Confidence 99999999999999999999999999999999999999999999984 789999999976 4678999999999999999
Q ss_pred ecChHHHHHHHHhcCCCCCCCCChHHHH
Q 008534 377 FGKASEAMAYFSSIGCSPQIAMNPAEFL 404 (562)
Q Consensus 377 ~G~~~el~~~f~~~g~~~~~~~npad~~ 404 (562)
+|+.+++. ..|...-..||+
T Consensus 229 ~g~T~~iF--------~~P~~~~TedYi 248 (253)
T COG1117 229 FGPTDKIF--------TNPKHKRTEDYI 248 (253)
T ss_pred EcCHHhhh--------cCccHHHHHHHh
Confidence 99998873 345555555554
|
|
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-49 Score=454.47 Aligned_cols=358 Identities=23% Similarity=0.330 Sum_probs=252.6
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCccccccccCCCCcchhhhhhhhhhhcCCCcccccccceeeeeecccccccccccccch
Q 008534 9 SLARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSG 88 (562)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 88 (562)
+..++..+..++..+...|.+.+.+|+|+|+.+....+++.+..........+.....+.........+.-..+..+..|
T Consensus 311 ~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~g 390 (694)
T TIGR03375 311 RLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKSRFLSNLATNFAQFIQQLVSVAIVVVG 390 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455567778888889999999999999999988888887766554332221111111100001111111223345678
Q ss_pred hhhhhhhhhhhhhhcccccCCCCccccccCCCC----------CCCCCccccccccC-C-CCCCCCCCCCceeEEEEeEE
Q 008534 89 AALSRASSASLGLSFSFTGFTMPPDEIADSKPF----------SDDDIPEDIEAGTR-E-RPKFQTEPTLPIYLKFTDVT 156 (562)
Q Consensus 89 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~l~~~nvs 156 (562)
+.++..+..+.|.+++|..+............. +..++...++..+. . .......+.....|+|+||+
T Consensus 391 ~~~v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~~~~~~~~~~~~I~~~~vs 470 (694)
T TIGR03375 391 VYLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPVERPEGTRFLHRPRLQGEIEFRNVS 470 (694)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCccceEEEEEEE
Confidence 888888888888888776654322211111000 00001111111100 0 00000011123469999999
Q ss_pred EEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh----hccCcEE
Q 008534 157 YKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIG 232 (562)
Q Consensus 157 ~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~----~~~~~ig 232 (562)
|+|+ ...+++|+|+||+|++||.+||+||||||||||+++|+|. ++ +.+|+|.+||.++.+ .+|+.|+
T Consensus 471 f~Y~------~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl-~~-p~~G~I~idg~~l~~~~~~~lr~~i~ 542 (694)
T TIGR03375 471 FAYP------GQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGL-YQ-PTEGSVLLDGVDIRQIDPADLRRNIG 542 (694)
T ss_pred EEeC------CCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcC-CC-CCCceEEECCEEhhhCCHHHHHhccE
Confidence 9993 2345799999999999999999999999999999999984 44 458999999999863 5789999
Q ss_pred EEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHH-----HHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHH
Q 008534 233 FVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEK-----RAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (562)
Q Consensus 233 yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~-----~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA 307 (562)
||+|++.+|+. |++|||.++.. ..++++..+ .+++.++ .+++.+||.+|+. ...||||||||++||
T Consensus 543 ~v~Q~~~lf~~-TI~eNi~~~~~-----~~~~~~i~~a~~~~~l~~~i~--~lp~gl~T~i~e~-G~~LSgGQrQRlalA 613 (694)
T TIGR03375 543 YVPQDPRLFYG-TLRDNIALGAP-----YADDEEILRAAELAGVTEFVR--RHPDGLDMQIGER-GRSLSGGQRQAVALA 613 (694)
T ss_pred EECCChhhhhh-hHHHHHhCCCC-----CCCHHHHHHHHHHcChHHHHH--hCcccccceecCC-CCCCCHHHHHHHHHH
Confidence 99999999975 99999998631 122322221 2233333 3577889999865 467999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHHHH
Q 008534 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAY 386 (562)
Q Consensus 308 raLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~~~ 386 (562)
|||+++|+|||||||||+||+.++..+.+.|+++.+ ++|+|+|||+++. .+.||+|++|++|++++.|+|+++++.
T Consensus 614 Rall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~-~~T~iiItHrl~~--~~~~D~iivl~~G~i~e~G~~~eLl~~ 689 (694)
T TIGR03375 614 RALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLA-GKTLVLVTHRTSL--LDLVDRIIVMDNGRIVADGPKDQVLEA 689 (694)
T ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHHH--HHhCCEEEEEeCCEEEeeCCHHHHHHH
Confidence 999999999999999999999999999999999864 8999999999864 578999999999999999999998764
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-49 Score=455.01 Aligned_cols=354 Identities=23% Similarity=0.272 Sum_probs=247.3
Q ss_pred HHHHHHHHHHHHHHHhhcCCCccccccccCCCCcchhhhhhhhhhhcCCCcccccccceeeeeecccccccccccccchh
Q 008534 10 LARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSGA 89 (562)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 89 (562)
..++.+++-++..+...|.+.+.+|+|+++.+....+++.+..........+.....+.....+...+.-..+.-+..|+
T Consensus 320 ~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~ 399 (710)
T TIGR03796 320 ANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQELGVLTQILGVLPTLLTSLNSALILVVGG 399 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666677788889999999999999999988888876655544332211100000000011111112233456788
Q ss_pred hhhhhhhhhhhhhcccccCCCCccccccC----------------CCCCCCCCccccccccCC-CC-CCCCCCCCceeEE
Q 008534 90 ALSRASSASLGLSFSFTGFTMPPDEIADS----------------KPFSDDDIPEDIEAGTRE-RP-KFQTEPTLPIYLK 151 (562)
Q Consensus 90 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~l~ 151 (562)
.++..+..+.|.++++..+.......... +.....+.+.+....... .. .....+.....|+
T Consensus 400 ~~v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~~~~~~~~~~~~~~~~~~I~ 479 (710)
T TIGR03796 400 LRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVDPLLEEEEAPAAGSEPSPRLSGYVE 479 (710)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccccccccccccCCCCCCeEE
Confidence 88888888888888776654322211110 111111111110000000 00 0000011234699
Q ss_pred EEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh----hc
Q 008534 152 FTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SL 227 (562)
Q Consensus 152 ~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~----~~ 227 (562)
++||+|+|+ ..++++|+|+||+|++||.+||+||||||||||+++|+|. ++ +.+|+|.+||.++.+ .+
T Consensus 480 ~~~vsf~y~------~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl-~~-p~~G~I~idg~~i~~~~~~~l 551 (710)
T TIGR03796 480 LRNITFGYS------PLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGL-YQ-PWSGEILFDGIPREEIPREVL 551 (710)
T ss_pred EEEEEEecC------CCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcC-CC-CCCcEEEECCEeHHHCCHHHH
Confidence 999999983 2346799999999999999999999999999999999985 44 458999999999853 57
Q ss_pred cCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHH-----HHHHHHHHcCCCccccccccCcccCCCChhHHH
Q 008534 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEK-----RAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (562)
Q Consensus 228 ~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~-----~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrq 302 (562)
|++||||+|++.+|+ .|++|||.++. + ..++++..+ .+++.++ .+++..||.+|+. ...|||||||
T Consensus 552 r~~i~~v~Q~~~lf~-gTi~eNi~l~~----~-~~~~~~i~~al~~~~l~~~i~--~lp~gl~t~i~e~-G~~LSGGQrQ 622 (710)
T TIGR03796 552 ANSVAMVDQDIFLFE-GTVRDNLTLWD----P-TIPDADLVRACKDAAIHDVIT--SRPGGYDAELAEG-GANLSGGQRQ 622 (710)
T ss_pred HhheeEEecCChhhh-ccHHHHhhCCC----C-CCCHHHHHHHHHHhCCHHHHH--hCcCcccceeccC-CCCCCHHHHH
Confidence 899999999999997 59999999752 1 122222221 1223333 3466789999865 4679999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHH
Q 008534 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (562)
Q Consensus 303 Rv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~e 382 (562)
|++|||||+++|+|||||||||+||+.++..+.+.|++ .++|+|++||+++. ...||+|++|++|++++.|++++
T Consensus 623 RiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~---~~~T~IiitHrl~~--i~~~D~Iivl~~G~i~~~G~~~~ 697 (710)
T TIGR03796 623 RLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR---RGCTCIIVAHRLST--IRDCDEIIVLERGKVVQRGTHEE 697 (710)
T ss_pred HHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh---cCCEEEEEecCHHH--HHhCCEEEEEeCCEEEEecCHHH
Confidence 99999999999999999999999999999999999986 48999999999864 56799999999999999999999
Q ss_pred HHH
Q 008534 383 AMA 385 (562)
Q Consensus 383 l~~ 385 (562)
+++
T Consensus 698 Ll~ 700 (710)
T TIGR03796 698 LWA 700 (710)
T ss_pred HHH
Confidence 875
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-47 Score=403.07 Aligned_cols=218 Identities=27% Similarity=0.502 Sum_probs=194.2
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh--h
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--S 226 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--~ 226 (562)
.|+++||+++| +.+.+|+|+||++++||+++|+|||||||||||++|+|... +++|+|.++|+++.. .
T Consensus 4 ~l~~~~l~~~~--------~~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~--p~~G~I~i~g~~~~~~~~ 73 (353)
T TIGR03265 4 YLSIDNIRKRF--------GAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLER--QTAGTIYQGGRDITRLPP 73 (353)
T ss_pred EEEEEEEEEEe--------CCeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC--CCceEEEECCEECCCCCH
Confidence 59999999998 24569999999999999999999999999999999999543 568999999998753 3
Q ss_pred ccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHH
Q 008534 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (562)
Q Consensus 227 ~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~I 306 (562)
.++.||||||++.+||++||+||+.|+...+ ..++.+..++++++++.++|.+..++ ++.+|||||||||+|
T Consensus 74 ~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~---~~~~~~~~~~~~~~l~~l~L~~~~~~-----~~~~LSgGq~QRvaL 145 (353)
T TIGR03265 74 QKRDYGIVFQSYALFPNLTVADNIAYGLKNR---GMGRAEVAERVAELLDLVGLPGSERK-----YPGQLSGGQQQRVAL 145 (353)
T ss_pred HHCCEEEEeCCcccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCCchhhC-----ChhhCCHHHHHHHHH
Confidence 4678999999999999999999999986543 23456667789999999999887765 457899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHHH
Q 008534 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (562)
Q Consensus 307 AraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~~ 385 (562)
||||+.+|++|||||||++||+.++..+.+.|+++.++ |.|+|++||++. ++..+||+|++|++|++++.|+++++..
T Consensus 146 ARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~-ea~~l~d~i~vl~~G~i~~~g~~~~~~~ 224 (353)
T TIGR03265 146 ARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQE-EALSMADRIVVMNHGVIEQVGTPQEIYR 224 (353)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999999999765 899999999975 5788999999999999999999998853
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-47 Score=403.11 Aligned_cols=218 Identities=28% Similarity=0.472 Sum_probs=192.8
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh--h
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--S 226 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--~ 226 (562)
.|+++||+++|. +++.+|+|+||+|++||+++|+|||||||||||++|+|... +++|+|.++|+++.. .
T Consensus 3 ~l~i~~l~~~~~-------~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~--p~~G~I~~~g~~i~~~~~ 73 (356)
T PRK11650 3 GLKLQAVRKSYD-------GKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLER--ITSGEIWIGGRVVNELEP 73 (356)
T ss_pred EEEEEeEEEEeC-------CCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC--CCceEEEECCEECCCCCH
Confidence 589999999982 24579999999999999999999999999999999999543 568999999998753 2
Q ss_pred ccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHH
Q 008534 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (562)
Q Consensus 227 ~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~I 306 (562)
.++.||||||++.+||++||+|||.|+...+ ..++.+..+++.++++.+||.+..+.. +++|||||||||+|
T Consensus 74 ~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~LSgGq~QRval 145 (356)
T PRK11650 74 ADRDIAMVFQNYALYPHMSVRENMAYGLKIR---GMPKAEIEERVAEAARILELEPLLDRK-----PRELSGGQRQRVAM 145 (356)
T ss_pred HHCCEEEEeCCccccCCCCHHHHHHhHHhhc---CCCHHHHHHHHHHHHHHcCChhHhhCC-----hhhCCHHHHHHHHH
Confidence 3578999999999999999999999986532 234555667889999999998776654 57899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHH
Q 008534 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (562)
Q Consensus 307 AraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~ 384 (562)
||||+.+|+||||||||++||+.++..+.+.|+++.++ |.|+|++||++. ++..+||+|++|++|++++.|+++++.
T Consensus 146 ARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~l~D~i~vl~~G~i~~~g~~~~~~ 223 (356)
T PRK11650 146 GRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQV-EAMTLADRVVVMNGGVAEQIGTPVEVY 223 (356)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCEEEEECCHHHHH
Confidence 99999999999999999999999999999999999765 899999999975 478899999999999999999999874
|
|
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-49 Score=454.11 Aligned_cols=356 Identities=21% Similarity=0.246 Sum_probs=251.5
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCccccccccCCCCcchhhhhhhhhhhcCCCcccccccceeeeeecccccccccccccch
Q 008534 9 SLARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSG 88 (562)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 88 (562)
++.++.+++-++..+...|.+...+|+|+++.+....+++.+..........+.....+.....+...+.-..+.-++.|
T Consensus 321 ~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~il~~g 400 (708)
T TIGR01193 321 KLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKADQGQQAIKAVTKLILNVVILWTG 400 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556667777788888999999999999999998888887766554333221111111000001111112233345688
Q ss_pred hhhhhhhhhhhhhhcccccCCCCccccccCCCC----------CCCCCccccccccCC--CCCCCCCCCCceeEEEEeEE
Q 008534 89 AALSRASSASLGLSFSFTGFTMPPDEIADSKPF----------SDDDIPEDIEAGTRE--RPKFQTEPTLPIYLKFTDVT 156 (562)
Q Consensus 89 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~nvs 156 (562)
+.++..+..+.|.+++|..+............. +..++...+...... .......+.....|+|+||+
T Consensus 401 ~~lv~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~~~~~~~~~~~~I~~~~vs 480 (708)
T TIGR01193 401 AYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVDSEFINKKKRTELNNLNGDIVINDVS 480 (708)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccccccCCCCCCCcEEEEEEE
Confidence 888888888999888877654322211111000 000011111100000 00000111122369999999
Q ss_pred EEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCC----hhccCcEE
Q 008534 157 YKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS----KSLKSKIG 232 (562)
Q Consensus 157 ~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~----~~~~~~ig 232 (562)
|+|. .++++|+|+||+|++|+.+||+||||||||||+++|+|. ++ +.+|+|++||.++. ..+|++||
T Consensus 481 f~y~-------~~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl-~~-p~~G~I~idg~~i~~~~~~~lr~~i~ 551 (708)
T TIGR01193 481 YSYG-------YGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGF-FQ-ARSGEILLNGFSLKDIDRHTLRQFIN 551 (708)
T ss_pred EEcC-------CCCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhcc-CC-CCCcEEEECCEEHHHcCHHHHHHheE
Confidence 9982 245799999999999999999999999999999999984 54 45899999999875 35788999
Q ss_pred EEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHH-----HHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHH
Q 008534 233 FVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKE-----KRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (562)
Q Consensus 233 yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~-----~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA 307 (562)
||+|++.+|+. ||+|||.++.. + ..++++.. ..+++.++ .++..+||.+|+. ...||||||||++||
T Consensus 552 ~v~Q~~~lf~g-TI~eNi~l~~~---~-~~~~~~i~~a~~~a~l~~~i~--~lp~gldt~i~e~-G~~LSgGQrQRialA 623 (708)
T TIGR01193 552 YLPQEPYIFSG-SILENLLLGAK---E-NVSQDEIWAACEIAEIKDDIE--NMPLGYQTELSEE-GSSISGGQKQRIALA 623 (708)
T ss_pred EEecCceehhH-HHHHHHhccCC---C-CCCHHHHHHHHHHhCCHHHHH--hcccccCcEecCC-CCCCCHHHHHHHHHH
Confidence 99999999975 99999998631 1 12222221 12333333 3467789999864 467999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHHH
Q 008534 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (562)
Q Consensus 308 raLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~~ 385 (562)
|||+++|+|||||||||+||+.++..+.+.|+++ +++|+|++||+++. .+.||+|++|++|++++.|+++++++
T Consensus 624 Rall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~--~~~T~IiitHr~~~--~~~~D~i~~l~~G~i~~~G~~~~L~~ 697 (708)
T TIGR01193 624 RALLTDSKVLILDESTSNLDTITEKKIVNNLLNL--QDKTIIFVAHRLSV--AKQSDKIIVLDHGKIIEQGSHDELLD 697 (708)
T ss_pred HHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh--cCCEEEEEecchHH--HHcCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999999999985 47999999999864 57899999999999999999999875
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-49 Score=443.01 Aligned_cols=358 Identities=20% Similarity=0.269 Sum_probs=245.1
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCccccccccCCCCcchhhhhhhhhhhcCCCcccccccceeeeeecccccccccccccch
Q 008534 9 SLARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSG 88 (562)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 88 (562)
+..++.+++.++..+...+.+...+++|+++.+....++|.+..........+...........+.....-..+.-+..|
T Consensus 191 ~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g 270 (582)
T PRK11176 191 NISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRQQGMKMVSASSISDPIIQLIASLALAFVLYAA 270 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555677778888889999999999999999988888888666554332221000000000001111111112223456
Q ss_pred hhhhhhhhhhhhhhcccccCCCC----ccccccCC------CCCCCCCccccccccCCCCCCCCCCCCceeEEEEeEEEE
Q 008534 89 AALSRASSASLGLSFSFTGFTMP----PDEIADSK------PFSDDDIPEDIEAGTRERPKFQTEPTLPIYLKFTDVTYK 158 (562)
Q Consensus 89 ~~~~~~~~~~~g~~~~~~~~~~~----~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~nvs~~ 158 (562)
+..+..+..+.|.+..+..+... ...+.... ..+..++....+..+.........+..+..++++||+|+
T Consensus 271 ~~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~i~~~~vsf~ 350 (582)
T PRK11176 271 SFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDLEQEKDEGKRVIERAKGDIEFRNVTFT 350 (582)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCCcCCCCCCCeEEEEEEEEe
Confidence 66666677777776544433221 11111000 000001111111000000000001111236999999999
Q ss_pred EeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh----hccCcEEEE
Q 008534 159 VILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFV 234 (562)
Q Consensus 159 y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~----~~~~~igyV 234 (562)
|+ ..++++|+|+|++|++||.+||+||||||||||+++|+|. ++ +.+|+|.+||.++.. .+++.|+||
T Consensus 351 y~------~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl-~~-p~~G~I~i~g~~i~~~~~~~~~~~i~~v 422 (582)
T PRK11176 351 YP------GKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRF-YD-IDEGEILLDGHDLRDYTLASLRNQVALV 422 (582)
T ss_pred cC------CCCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhc-cC-CCCceEEECCEEhhhcCHHHHHhhceEE
Confidence 83 2246799999999999999999999999999999999985 43 458999999999853 568889999
Q ss_pred ccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHH-----HHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHH
Q 008534 235 TQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEK-----RAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNE 309 (562)
Q Consensus 235 ~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~-----~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAra 309 (562)
||++.+|+ .|++|||.++. ++..++++..+ .++++++ .|++..||.+|+. ...||||||||++||||
T Consensus 423 ~Q~~~lf~-~Ti~~Ni~~~~----~~~~~~~~i~~al~~~~l~~~i~--~lp~Gldt~ig~~-g~~LSGGqrQRi~LARa 494 (582)
T PRK11176 423 SQNVHLFN-DTIANNIAYAR----TEQYSREQIEEAARMAYAMDFIN--KMDNGLDTVIGEN-GVLLSGGQRQRIAIARA 494 (582)
T ss_pred ccCceeec-chHHHHHhcCC----CCCCCHHHHHHHHHHhCcHHHHH--hcccccCceeCCC-CCcCCHHHHHHHHHHHH
Confidence 99999997 59999999863 11123332222 1223333 2577889999865 46799999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHHH
Q 008534 310 IIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (562)
Q Consensus 310 Ll~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~~ 385 (562)
|+++|+|||||||||+||+.++..+.+.|+++.+ ++|+|+|||+++ ..+.||+|++|++|++++.|+++++++
T Consensus 495 ll~~~~ililDEptsaLD~~t~~~i~~~l~~~~~-~~tvI~VtHr~~--~~~~~D~Ii~l~~g~i~e~g~~~~l~~ 567 (582)
T PRK11176 495 LLRDSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRLS--TIEKADEILVVEDGEIVERGTHAELLA 567 (582)
T ss_pred HHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC-CCEEEEEecchH--HHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 9999999999999999999999999999998754 799999999985 467899999999999999999999874
|
|
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-47 Score=401.44 Aligned_cols=217 Identities=25% Similarity=0.515 Sum_probs=193.2
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh--h
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--S 226 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--~ 226 (562)
.|+++||++.| +++.+|+|+||+|++||+++|+|||||||||||++|+|... +++|+|.+||.++.. .
T Consensus 6 ~l~~~~l~~~~--------~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~--p~~G~I~~~g~~i~~~~~ 75 (351)
T PRK11432 6 FVVLKNITKRF--------GSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEK--PTEGQIFIDGEDVTHRSI 75 (351)
T ss_pred EEEEEeEEEEE--------CCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC--CCceEEEECCEECCCCCH
Confidence 69999999998 24579999999999999999999999999999999999543 568999999998753 3
Q ss_pred ccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHH
Q 008534 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (562)
Q Consensus 227 ~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~I 306 (562)
.++.||||+|++.+||++||+||+.|+...+ ..++.+..+++.++++.++|.+..+. ++..|||||||||+|
T Consensus 76 ~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~---~~~~~~~~~~v~~~l~~~gl~~~~~r-----~~~~LSgGq~QRVaL 147 (351)
T PRK11432 76 QQRDICMVFQSYALFPHMSLGENVGYGLKML---GVPKEERKQRVKEALELVDLAGFEDR-----YVDQISGGQQQRVAL 147 (351)
T ss_pred HHCCEEEEeCCcccCCCCCHHHHHHHHHhHc---CCCHHHHHHHHHHHHHHcCCchhhcC-----ChhhCCHHHHHHHHH
Confidence 4578999999999999999999999987543 23456667789999999999876654 457899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHH
Q 008534 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (562)
Q Consensus 307 AraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~ 384 (562)
||||+.+|+||||||||++||+.++.++.+.|+++.++ |+|+|++||++. ++..+||+|++|++|+++..|+++++.
T Consensus 148 ARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-e~~~laD~i~vm~~G~i~~~g~~~~~~ 225 (351)
T PRK11432 148 ARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQS-EAFAVSDTVIVMNKGKIMQIGSPQELY 225 (351)
T ss_pred HHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999999999999999765 899999999975 477899999999999999999999874
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-47 Score=379.51 Aligned_cols=217 Identities=29% Similarity=0.509 Sum_probs=186.7
Q ss_pred EEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh----
Q 008534 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (562)
Q Consensus 150 l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~---- 225 (562)
|+++||++.| +++++|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++..
T Consensus 1 l~~~~l~~~~--------~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~~~~~ 70 (235)
T cd03261 1 IELRGLTKSF--------GGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLR--PDSGEVLIDGEDISGLSEA 70 (235)
T ss_pred CeEEEEEEEE--------CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEccccChh
Confidence 4689999998 24579999999999999999999999999999999999653 568999999988642
Q ss_pred ---hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHH
Q 008534 226 ---SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (562)
Q Consensus 226 ---~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrq 302 (562)
.+++.|+||+|++.+|+.+||+||+.++..... .....+..+++.++++.++|.+..++. +.+|||||||
T Consensus 71 ~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~q 143 (235)
T cd03261 71 ELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHT--RLSEEEIREIVLEKLEAVGLRGAEDLY-----PAELSGGMKK 143 (235)
T ss_pred hHHHHhcceEEEccCcccCCCCcHHHHHHHHHhhcc--CCCHHHHHHHHHHHHHHcCCchhhcCC-----hhhCCHHHHH
Confidence 346779999999999999999999998753211 123444456788899999998766554 4689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChH
Q 008534 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKAS 381 (562)
Q Consensus 303 Rv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~ 381 (562)
||+|||||+.+|+||||||||+|||+.++..+++.|++++++ |+|||++||++. .+..+||+|++|++|++++.|+++
T Consensus 144 rv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~-~~~~~~d~v~~l~~G~i~~~g~~~ 222 (235)
T cd03261 144 RVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLD-TAFAIADRIAVLYDGKIVAEGTPE 222 (235)
T ss_pred HHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhcCEEEEEECCeEEEecCHH
Confidence 999999999999999999999999999999999999999864 899999999976 467889999999999999999988
Q ss_pred HHH
Q 008534 382 EAM 384 (562)
Q Consensus 382 el~ 384 (562)
++.
T Consensus 223 ~~~ 225 (235)
T cd03261 223 ELR 225 (235)
T ss_pred HHc
Confidence 753
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-47 Score=400.34 Aligned_cols=218 Identities=26% Similarity=0.466 Sum_probs=193.4
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCc--cEEEECCEeCCh-
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVG--GSITYNDHPYSK- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~--G~I~i~G~~~~~- 225 (562)
.|+++||+++| +.+.+|+|+||+|++||+++|+|||||||||||++|+|... +++ |+|.++|+++..
T Consensus 5 ~l~~~~l~~~~--------~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~--p~~~~G~i~~~g~~~~~~ 74 (362)
T TIGR03258 5 GIRIDHLRVAY--------GANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVK--AAGLTGRIAIADRDLTHA 74 (362)
T ss_pred EEEEEEEEEEE--------CCeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCCEEEEECCEECCCC
Confidence 58999999998 24569999999999999999999999999999999999543 568 999999998753
Q ss_pred -hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHH
Q 008534 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (562)
Q Consensus 226 -~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 304 (562)
..++.||||+|++.+||++||+|||.|+...+ ..++.+..+++.++++.++|.+..++. +++|||||||||
T Consensus 75 ~~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~~~-----~~~LSgGq~QRv 146 (362)
T TIGR03258 75 PPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQ---KMPKADIAERVADALKLVGLGDAAAHL-----PAQLSGGMQQRI 146 (362)
T ss_pred CHHHCCEEEEECCcccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCCchhhCC-----hhhCCHHHHHHH
Confidence 24578999999999999999999999987543 234556667899999999998877654 579999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC--CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHH
Q 008534 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA--GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (562)
Q Consensus 305 ~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~--g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~e 382 (562)
+|||||+.+|+||||||||+|||+.++.++.+.|+++.++ |.|+|++||++. ++..+||+|++|++|+++..|++++
T Consensus 147 aLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~-ea~~l~dri~vl~~G~i~~~g~~~~ 225 (362)
T TIGR03258 147 AIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQD-DALTLADKAGIMKDGRLAAHGEPQA 225 (362)
T ss_pred HHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHH
Confidence 9999999999999999999999999999999999999876 799999999975 4788999999999999999999998
Q ss_pred HHH
Q 008534 383 AMA 385 (562)
Q Consensus 383 l~~ 385 (562)
+..
T Consensus 226 ~~~ 228 (362)
T TIGR03258 226 LYD 228 (362)
T ss_pred HHh
Confidence 853
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-46 Score=395.69 Aligned_cols=220 Identities=28% Similarity=0.423 Sum_probs=193.4
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh--
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~-- 225 (562)
..|+++||+++| +++.+|+||||+|++|++++|+||||||||||+++|+|.+. +++|+|.++|.++..
T Consensus 40 ~~i~i~nl~k~y--------~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~--p~~G~i~i~G~~~~~~~ 109 (340)
T PRK13536 40 VAIDLAGVSKSY--------GDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTS--PDAGKITVLGVPVPARA 109 (340)
T ss_pred eeEEEEEEEEEE--------CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCceEEEECCEECCcch
Confidence 369999999998 24579999999999999999999999999999999999653 568999999998753
Q ss_pred -hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHH
Q 008534 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (562)
Q Consensus 226 -~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 304 (562)
..++.||||||++.+++.+||+||+.+....+ .....+..+++.++++.++|.+..++.+ ++|||||||||
T Consensus 110 ~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~ll~~~~L~~~~~~~~-----~~LS~G~kqrv 181 (340)
T PRK13536 110 RLARARIGVVPQFDNLDLEFTVRENLLVFGRYF---GMSTREIEAVIPSLLEFARLESKADARV-----SDLSGGMKRRL 181 (340)
T ss_pred HHHhccEEEEeCCccCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhCCCh-----hhCCHHHHHHH
Confidence 35678999999999999999999999765443 1233444556788999999988777654 58999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHH
Q 008534 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (562)
Q Consensus 305 ~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~ 384 (562)
+||+||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||+++ ++.++||+|++|++|++++.|+++++.
T Consensus 182 ~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~-e~~~~~d~i~il~~G~i~~~g~~~~l~ 260 (340)
T PRK13536 182 TLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME-EAERLCDRLCVLEAGRKIAEGRPHALI 260 (340)
T ss_pred HHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999999999999999999999999999999877999999999976 577899999999999999999999986
Q ss_pred HH
Q 008534 385 AY 386 (562)
Q Consensus 385 ~~ 386 (562)
..
T Consensus 261 ~~ 262 (340)
T PRK13536 261 DE 262 (340)
T ss_pred hh
Confidence 54
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-47 Score=377.72 Aligned_cols=218 Identities=29% Similarity=0.532 Sum_probs=194.0
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCC----
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---- 224 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~---- 224 (562)
.++++|++|+|+ .. ..+|+|+|++|++|+.++|+||||||||||+++|+|.+. +.+|.|.++|.++.
T Consensus 3 ~i~~~~l~~~y~------~~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~--p~~G~v~~~g~~~~~~~~ 73 (235)
T COG1122 3 MIEAENLSFRYP------GR-KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLK--PTSGEVLVDGLDTSSEKS 73 (235)
T ss_pred eEEEEEEEEEcC------CC-ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCc--CCCCEEEECCeeccchhh
Confidence 589999999982 12 689999999999999999999999999999999999664 45899999999865
Q ss_pred -hhccCcEEEEccCC--CCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHH
Q 008534 225 -KSLKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGER 301 (562)
Q Consensus 225 -~~~~~~igyV~Q~~--~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqr 301 (562)
..++++||||+|+| .+|. -||.|.++|+.... .++.++.++++.++++.+|+.+..+. .+..||||||
T Consensus 74 ~~~~~~~vG~VfQnpd~q~~~-~tV~~evafg~~n~---g~~~~e~~~rv~~~l~~vgl~~~~~r-----~p~~LSGGqk 144 (235)
T COG1122 74 LLELRQKVGLVFQNPDDQLFG-PTVEDEVAFGLENL---GLPREEIEERVAEALELVGLEELLDR-----PPFNLSGGQK 144 (235)
T ss_pred HHHhhcceEEEEECccccccc-CcHHHHHhhchhhc---CCCHHHHHHHHHHHHHHcCchhhccC-----CccccCCcce
Confidence 25688999999997 5664 59999999997543 45677788999999999999987665 4679999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecCh
Q 008534 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 380 (562)
Q Consensus 302 qRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~ 380 (562)
|||+||.+|+.+|++|||||||||||+..+.++++.++++.++ |+|||++|||+. .+..+||++++|++|+++++|++
T Consensus 145 qRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~-~~~~~ad~v~vl~~G~i~~~g~p 223 (235)
T COG1122 145 QRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLE-LVLEYADRVVVLDDGKILADGDP 223 (235)
T ss_pred eeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHH-HHHhhCCEEEEEECCEEeecCCH
Confidence 9999999999999999999999999999999999999999877 699999999976 47888999999999999999999
Q ss_pred HHHHH
Q 008534 381 SEAMA 385 (562)
Q Consensus 381 ~el~~ 385 (562)
+++..
T Consensus 224 ~~i~~ 228 (235)
T COG1122 224 AEIFN 228 (235)
T ss_pred HHHhh
Confidence 87754
|
|
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-49 Score=418.28 Aligned_cols=222 Identities=32% Similarity=0.540 Sum_probs=188.3
Q ss_pred ceeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCC--
Q 008534 147 PIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS-- 224 (562)
Q Consensus 147 ~~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~-- 224 (562)
+..|+|+||+|+|. ++++||++|||+|++||.+||+|+|||||||++|+|.+ +++ .+|+|++||+++.
T Consensus 349 ~~~I~F~dV~f~y~-------~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~Llr-F~d--~sG~I~IdG~dik~~ 418 (591)
T KOG0057|consen 349 GGSIEFDDVHFSYG-------PKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLR-FFD--YSGSILIDGQDIKEV 418 (591)
T ss_pred CCcEEEEeeEEEeC-------CCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHH-Hhc--cCCcEEECCeeHhhh
Confidence 34699999999982 35569999999999999999999999999999999995 554 5899999999985
Q ss_pred --hhccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHH
Q 008534 225 --KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (562)
Q Consensus 225 --~~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrq 302 (562)
+.+|+.|||||||..||++ ||.+||.|+......+.+.+..+....++.+.. +++.+.|.+|++. ..|||||||
T Consensus 419 ~~~SlR~~Ig~VPQd~~LFnd-TIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~--l~~GY~T~VGerG-~~LSGGekQ 494 (591)
T KOG0057|consen 419 SLESLRQSIGVVPQDSVLFND-TILYNIKYGNPSASDEEVVEACKRAGLHDVISR--LPDGYQTLVGERG-LMLSGGEKQ 494 (591)
T ss_pred ChHHhhhheeEeCCcccccch-hHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHh--ccccchhhHhhcc-cccccchHH
Confidence 3578999999999999975 999999998532211112222233334555543 5889999999765 459999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHH
Q 008534 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (562)
Q Consensus 303 Rv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~e 382 (562)
||+||||++++|+|+++|||||+||.+++.++++.+.+.. .++|+|+|.|+++. ...||+|++|++|++.+.|+|+|
T Consensus 495 rvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~-~~rTvI~IvH~l~l--l~~~DkI~~l~nG~v~e~gth~e 571 (591)
T KOG0057|consen 495 RVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDVM-SGRTVIMIVHRLDL--LKDFDKIIVLDNGTVKEYGTHSE 571 (591)
T ss_pred HHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHhc-CCCeEEEEEecchh--HhcCCEEEEEECCeeEEeccHHH
Confidence 9999999999999999999999999999999999999944 58999999999764 67899999999999999999999
Q ss_pred HHH
Q 008534 383 AMA 385 (562)
Q Consensus 383 l~~ 385 (562)
+++
T Consensus 572 ll~ 574 (591)
T KOG0057|consen 572 LLA 574 (591)
T ss_pred Hhh
Confidence 986
|
|
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-46 Score=399.03 Aligned_cols=218 Identities=25% Similarity=0.443 Sum_probs=192.9
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh--
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~-- 225 (562)
..|+++||++.| +++.+|+|+||+|++||+++|+|||||||||||++|+|... +.+|+|.++|.++..
T Consensus 13 ~~L~l~~l~~~~--------~~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~--p~~G~I~~~g~~i~~~~ 82 (375)
T PRK09452 13 PLVELRGISKSF--------DGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFET--PDSGRIMLDGQDITHVP 82 (375)
T ss_pred ceEEEEEEEEEE--------CCeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEECCCCC
Confidence 369999999998 24579999999999999999999999999999999999543 568999999998753
Q ss_pred hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHH
Q 008534 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC 305 (562)
Q Consensus 226 ~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ 305 (562)
..++.||||||++.+||++||+|||.|+...+ ..++.+..+++.++++.++|.+..+.. +.+|||||||||+
T Consensus 83 ~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----p~~LSgGq~QRVa 154 (375)
T PRK09452 83 AENRHVNTVFQSYALFPHMTVFENVAFGLRMQ---KTPAAEITPRVMEALRMVQLEEFAQRK-----PHQLSGGQQQRVA 154 (375)
T ss_pred HHHCCEEEEecCcccCCCCCHHHHHHHHHhhc---CCCHHHHHHHHHHHHHHcCCchhhhCC-----hhhCCHHHHHHHH
Confidence 34578999999999999999999999986532 234555566788999999998777654 5789999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHH
Q 008534 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (562)
Q Consensus 306 IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~ 384 (562)
|||||+.+|++|||||||++||+.++..+.+.|+++.++ |.|+|++||++. ++..+||+|++|++|++++.|+++++.
T Consensus 155 LARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~-ea~~laDri~vl~~G~i~~~g~~~~i~ 233 (375)
T PRK09452 155 IARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQE-EALTMSDRIVVMRDGRIEQDGTPREIY 233 (375)
T ss_pred HHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999999999999999999999765 899999999975 477899999999999999999999875
|
|
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-46 Score=396.31 Aligned_cols=220 Identities=25% Similarity=0.471 Sum_probs=191.9
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh--h
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--S 226 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--~ 226 (562)
.|+++||++.| +++.+|+|+||+|++||+++|+|||||||||||++|+|... +.+|+|+++|+++.. .
T Consensus 2 ~L~i~~l~~~~--------~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~--p~~G~I~i~g~~i~~~~~ 71 (353)
T PRK10851 2 SIEIANIKKSF--------GRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEH--QTSGHIRFHGTDVSRLHA 71 (353)
T ss_pred EEEEEEEEEEe--------CCeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECCCCCH
Confidence 48899999998 24579999999999999999999999999999999999543 568999999998753 3
Q ss_pred ccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCC-CCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHH
Q 008534 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLP-NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC 305 (562)
Q Consensus 227 ~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ 305 (562)
.++.|+||+|++.+||++||+||+.|+...... ...+..+..+++.++++.++|++..++ ++.+|||||||||+
T Consensus 72 ~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~-----~~~~LSgGq~QRva 146 (353)
T PRK10851 72 RDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADR-----YPAQLSGGQKQRVA 146 (353)
T ss_pred HHCCEEEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhC-----ChhhCCHHHHHHHH
Confidence 356799999999999999999999998643110 123445566788999999999876665 45789999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHH
Q 008534 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (562)
Q Consensus 306 IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~ 384 (562)
|||||+.+|++|||||||+|||+.++..+.+.|+++.++ |+|+|++||++. ++..+||+|++|++|++++.|+++++.
T Consensus 147 lArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~-ea~~~~Dri~vl~~G~i~~~g~~~~i~ 225 (353)
T PRK10851 147 LARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQE-EAMEVADRVVVMSQGNIEQAGTPDQVW 225 (353)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999999999999999999999865 899999999975 477899999999999999999999875
|
|
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-49 Score=438.72 Aligned_cols=354 Identities=23% Similarity=0.319 Sum_probs=244.3
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCccccccccCCCCcchhhhhhhhhhhcCCCcccccccceeeeeecccccccccccccch
Q 008534 9 SLARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSG 88 (562)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 88 (562)
+..++.++..++.++...|.+...+|+|+|+.+..+.+++.+......+...+.....+...........-..+.-++.|
T Consensus 187 ~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g 266 (574)
T PRK11160 187 KPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLEQTEQQWLAAQRRQANLTGLSQALMILANGLTVVLMLWLA 266 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566678888889999999999999999999998888888766655443332111111110000000000111123455
Q ss_pred hhhhhhhhhhhhhhcccccCC-C----Ccccccc---C---CCCCCCCCccccccccC-CCCCCCCCCCCceeEEEEeEE
Q 008534 89 AALSRASSASLGLSFSFTGFT-M----PPDEIAD---S---KPFSDDDIPEDIEAGTR-ERPKFQTEPTLPIYLKFTDVT 156 (562)
Q Consensus 89 ~~~~~~~~~~~g~~~~~~~~~-~----~~~~~~~---~---~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~nvs 156 (562)
+.+. .+..+.|.++++..+. + +...+.. . ...+..++.+.++..+. ..+.....+.....|+|+||+
T Consensus 267 ~~~~-~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~ll~~~~~~~~~~~~~~~~~~~~i~~~~v~ 345 (574)
T PRK11160 267 AGGV-GGNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQVIASARRINEITEQKPEVTFPTTSTAAADQVSLTLNNVS 345 (574)
T ss_pred HHHh-ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCcccCCCCCCCeEEEEEEE
Confidence 5443 3555666655543321 1 1110000 0 00000111111111110 000000001122469999999
Q ss_pred EEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh----hccCcEE
Q 008534 157 YKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIG 232 (562)
Q Consensus 157 ~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~----~~~~~ig 232 (562)
|+|+ ..++++|+|+||+|++||++||+||||||||||+++|+|. ++ +.+|+|++||.++.+ .+|+.|+
T Consensus 346 f~y~------~~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~-~~-p~~G~I~i~g~~i~~~~~~~~r~~i~ 417 (574)
T PRK11160 346 FTYP------DQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRA-WD-PQQGEILLNGQPIADYSEAALRQAIS 417 (574)
T ss_pred EECC------CCCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcC-CC-CCCceEEECCEEhhhCCHHHHHhhee
Confidence 9983 1235799999999999999999999999999999999984 44 458999999999763 5788999
Q ss_pred EEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCC------CccccccccCcccCCCChhHHHHHHH
Q 008534 233 FVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL------ERCQDTMIGGSFVRGVSGGERKRVCI 306 (562)
Q Consensus 233 yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL------~~~~~t~vg~~~~~~LSGGqrqRv~I 306 (562)
||+|++.+|+. |++|||.++.. ..++ +++.++++..++ ++++||.+|+. ...||||||||++|
T Consensus 418 ~v~Q~~~lf~~-ti~~Ni~~~~~-----~~~~----~~i~~al~~~~l~~~i~~p~GldT~vge~-g~~LSgGqrqRial 486 (574)
T PRK11160 418 VVSQRVHLFSA-TLRDNLLLAAP-----NASD----EALIEVLQQVGLEKLLEDDKGLNAWLGEG-GRQLSGGEQRRLGI 486 (574)
T ss_pred EEcccchhhcc-cHHHHhhcCCC-----ccCH----HHHHHHHHHcCCHHHHcCccccCchhcCC-CCCCCHHHHHHHHH
Confidence 99999999975 99999998631 1222 234555555554 56678988865 56799999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHHH
Q 008534 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (562)
Q Consensus 307 AraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~~ 385 (562)
||||+++|+||||||||++||+.++..+.+.|+++. +++|+|+++|+++. ...||+|++|++|++++.|+|+++++
T Consensus 487 ARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~-~~~tviiitHr~~~--~~~~d~i~~l~~G~i~~~g~~~~l~~ 562 (574)
T PRK11160 487 ARALLHDAPLLLLDEPTEGLDAETERQILELLAEHA-QNKTVLMITHRLTG--LEQFDRICVMDNGQIIEQGTHQELLA 562 (574)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecChhH--HHhCCEEEEEeCCeEEEeCCHHHHHh
Confidence 999999999999999999999999999999999986 48999999999864 46799999999999999999999874
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-47 Score=370.53 Aligned_cols=221 Identities=29% Similarity=0.436 Sum_probs=189.1
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
.|+++|+++.|..++ ...++|+||||+|.+||+++|+|+||||||||.++|+|.. .+++|+|.++|.++..
T Consensus 3 ~l~v~nl~~~y~~~~----~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~--~p~~G~I~~~G~~~~~~~~ 76 (252)
T COG1124 3 LLSVRNLSIVYGGGK----FAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLE--KPSSGSILLDGKPLAPKKR 76 (252)
T ss_pred eEEEeceEEEecCCc----chhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhccc--CCCCceEEECCcccCcccc
Confidence 689999999984211 1236999999999999999999999999999999999954 3568999999987754
Q ss_pred --hccCcEEEEccCC--CCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHH
Q 008534 226 --SLKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGER 301 (562)
Q Consensus 226 --~~~~~igyV~Q~~--~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqr 301 (562)
..++.|.+||||| .+-|..||++.|.-+... .+.++.+ +++.++++.+||++.. .++++.+||||||
T Consensus 77 ~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~---~~~~~~~--~~i~~~L~~VgL~~~~----l~R~P~eLSGGQ~ 147 (252)
T COG1124 77 AKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRP---HGLSKSQ--QRIAELLDQVGLPPSF----LDRRPHELSGGQR 147 (252)
T ss_pred chhhccceeEEecCCccccCcchhHHHHHhhhhcc---CCccHHH--HHHHHHHHHcCCCHHH----HhcCchhcChhHH
Confidence 3577899999998 488899999999877543 1233333 3488999999998643 2357889999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecCh
Q 008534 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 380 (562)
Q Consensus 302 qRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~ 380 (562)
|||+|||||+.+|++||||||||+||+..+.+|++.|.++.++ +.|.|+||||.. .+..+||||+||++|++++.++.
T Consensus 148 QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~-~v~~~cdRi~Vm~~G~ivE~~~~ 226 (252)
T COG1124 148 QRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLA-LVEHMCDRIAVMDNGQIVEIGPT 226 (252)
T ss_pred HHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHH-HHHHHhhheeeeeCCeEEEeech
Confidence 9999999999999999999999999999999999999999764 889999999975 47889999999999999999999
Q ss_pred HHHHH
Q 008534 381 SEAMA 385 (562)
Q Consensus 381 ~el~~ 385 (562)
+++..
T Consensus 227 ~~l~~ 231 (252)
T COG1124 227 EELLS 231 (252)
T ss_pred hhhhc
Confidence 98864
|
|
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-46 Score=370.31 Aligned_cols=215 Identities=28% Similarity=0.474 Sum_probs=186.0
Q ss_pred EEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---h
Q 008534 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---S 226 (562)
Q Consensus 150 l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~---~ 226 (562)
|+++|++++| +++++|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++.. .
T Consensus 1 i~~~~~~~~~--------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~ 70 (220)
T cd03265 1 IEVENLVKKY--------GDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLK--PTSGRATVAGHDVVREPRE 70 (220)
T ss_pred CEEEEEEEEE--------CCEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEecCcChHH
Confidence 4789999988 24579999999999999999999999999999999999643 568999999987642 3
Q ss_pred ccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHH
Q 008534 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (562)
Q Consensus 227 ~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~I 306 (562)
+++.++|++|++.+++.+||+||+.+....+ .....+..+++.++++.++|.+..++. +..|||||||||+|
T Consensus 71 ~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qr~~l 142 (220)
T cd03265 71 VRRRIGIVFQDLSVDDELTGWENLYIHARLY---GVPGAERRERIDELLDFVGLLEAADRL-----VKTYSGGMRRRLEI 142 (220)
T ss_pred HhhcEEEecCCccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCC-----hhhCCHHHHHHHHH
Confidence 4567999999999999999999999875432 123334456788999999998766654 46899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHH
Q 008534 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (562)
Q Consensus 307 AraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el 383 (562)
||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. .+...||+|++|++|++++.|+++++
T Consensus 143 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 143 ARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYME-EAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred HHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 99999999999999999999999999999999999876 899999999976 46788999999999999999987763
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-46 Score=387.44 Aligned_cols=218 Identities=28% Similarity=0.419 Sum_probs=190.0
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
.|+++||+++| +++.+|+||||+|++|++++|+||||||||||+++|+|.+. +.+|+|.++|.++..
T Consensus 4 ~i~~~~l~~~~--------~~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~ 73 (303)
T TIGR01288 4 AIDLVGVSKSY--------GDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMIS--PDRGKITVLGEPVPSRAR 73 (303)
T ss_pred EEEEEeEEEEe--------CCeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECcccHH
Confidence 68999999998 24579999999999999999999999999999999999653 568999999998742
Q ss_pred hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHH
Q 008534 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC 305 (562)
Q Consensus 226 ~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ 305 (562)
..++.+|||+|++.+++.+||+||+.+..... ..+.....+++.++++.++|.+..++. +++|||||||||+
T Consensus 74 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~ll~~~~l~~~~~~~-----~~~LSgG~~qrv~ 145 (303)
T TIGR01288 74 LARVAIGVVPQFDNLDPEFTVRENLLVFGRYF---GMSTREIEAVIPSLLEFARLESKADVR-----VALLSGGMKRRLT 145 (303)
T ss_pred HHhhcEEEEeccccCCcCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhHhcCc-----hhhCCHHHHHHHH
Confidence 34678999999999999999999998754332 123334445677889999998777765 4689999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHHH
Q 008534 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (562)
Q Consensus 306 IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~~ 385 (562)
|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. ++.++||+|++|++|++++.|+++++..
T Consensus 146 la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 224 (303)
T TIGR01288 146 LARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME-EAERLCDRLCVLESGRKIAEGRPHALID 224 (303)
T ss_pred HHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999999999999999999999999999877999999999976 4778999999999999999999998764
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-46 Score=396.93 Aligned_cols=219 Identities=26% Similarity=0.459 Sum_probs=193.0
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh--
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~-- 225 (562)
..|+++||+++| +++.+|+|+||+|++||+++|+|||||||||||++|+|... +.+|+|.++|+++..
T Consensus 18 ~~l~l~~v~~~~--------~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~--p~~G~I~i~g~~i~~~~ 87 (377)
T PRK11607 18 PLLEIRNLTKSF--------DGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQ--PTAGQIMLDGVDLSHVP 87 (377)
T ss_pred ceEEEEeEEEEE--------CCEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEECCCCC
Confidence 469999999998 24579999999999999999999999999999999999543 568999999998753
Q ss_pred hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHH
Q 008534 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC 305 (562)
Q Consensus 226 ~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ 305 (562)
..++.||||||++.+||++||+|||.|+...+ ..++.+..+++.++++.++|.+..+. ++.+|||||||||+
T Consensus 88 ~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~---~~~~~~~~~~v~~~l~~l~L~~~~~~-----~~~~LSgGq~QRVa 159 (377)
T PRK11607 88 PYQRPINMMFQSYALFPHMTVEQNIAFGLKQD---KLPKAEIASRVNEMLGLVHMQEFAKR-----KPHQLSGGQRQRVA 159 (377)
T ss_pred HHHCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcC-----ChhhCCHHHHHHHH
Confidence 34678999999999999999999999986543 23455566788999999999876665 45789999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHH
Q 008534 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (562)
Q Consensus 306 IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~ 384 (562)
|||||+.+|++|||||||++||+.++..+.+.|+++.+ .|.|+|++||++. ++..+||+|++|++|+++..|+++++.
T Consensus 160 LARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~laDri~vl~~G~i~~~g~~~~~~ 238 (377)
T PRK11607 160 LARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQE-EAMTMAGRIAIMNRGKFVQIGEPEEIY 238 (377)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEeCCEEEEEcCHHHHH
Confidence 99999999999999999999999999999999999865 4899999999975 578899999999999999999999875
Q ss_pred H
Q 008534 385 A 385 (562)
Q Consensus 385 ~ 385 (562)
.
T Consensus 239 ~ 239 (377)
T PRK11607 239 E 239 (377)
T ss_pred h
Confidence 3
|
|
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-48 Score=431.91 Aligned_cols=355 Identities=25% Similarity=0.323 Sum_probs=248.3
Q ss_pred HHHHHHHHHHHHHHhhcCCCccccccccCCCCcchhhhhhhhhhhcCCCcccccccceeeeeecccccccccccccchhh
Q 008534 11 ARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSGAA 90 (562)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 90 (562)
.++.++..++..+...|.+...+|+|+|+.+....++|.+..........+.....+.....+.....-..+..+..|+.
T Consensus 169 ~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 248 (544)
T TIGR01842 169 LKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLSKYFRIVLQSLVLGLGAY 248 (544)
T ss_pred HHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666677778888899999999999999988888866655433222111111111011111111122334557888
Q ss_pred hhhhhhhhhhhhcccccCCCCccccccCCC----------CCCCCCccccccccCCCCCCCCCCCCceeEEEEeEEEEEe
Q 008534 91 LSRASSASLGLSFSFTGFTMPPDEIADSKP----------FSDDDIPEDIEAGTRERPKFQTEPTLPIYLKFTDVTYKVI 160 (562)
Q Consensus 91 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~nvs~~y~ 160 (562)
++..+..+.|.++++..+............ .+..++...++..+...+. ...+.....++++||+|+|+
T Consensus 249 l~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~-~~~~~~~~~i~~~~v~~~y~ 327 (544)
T TIGR01842 249 LAIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDPA-MPLPEPEGHLSVENVTIVPP 327 (544)
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCC-CCCCCCCCeEEEEEEEEEcC
Confidence 888888888888877665432211110000 0000111111111100000 01111123699999999983
Q ss_pred ecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh----hccCcEEEEcc
Q 008534 161 LKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQ 236 (562)
Q Consensus 161 ~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~----~~~~~igyV~Q 236 (562)
..++++|+|+||++++|+.++|+||||||||||+++|+|.+ + +.+|+|.+||.++.. .+++.++||+|
T Consensus 328 ------~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~-~-~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q 399 (544)
T TIGR01842 328 ------GGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIW-P-PTSGSVRLDGADLKQWDRETFGKHIGYLPQ 399 (544)
T ss_pred ------CCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-C-CCCceEEECCEehhhCCHHHHhhheEEecC
Confidence 22457999999999999999999999999999999999854 3 458999999998753 46788999999
Q ss_pred CCCCCCCCCHHHHHHHHHhhCCCCCccHHHH-----HHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHh
Q 008534 237 DDVLFPHLTVKETLTYAALLRLPNTLTKQQK-----EKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEII 311 (562)
Q Consensus 237 ~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~-----~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl 311 (562)
++.+|+. |++||+.++.. ..++++. ...++++++.+ ++..||.+|.. ...||||||||++|||||+
T Consensus 400 ~~~lf~~-ti~~Ni~~~~~-----~~~~~~~~~~~~~~~~~~~i~~l--~~gl~t~~~~~-g~~LSgGq~qrl~lARall 470 (544)
T TIGR01842 400 DVELFPG-TVAENIARFGE-----NADPEKIIEAAKLAGVHELILRL--PDGYDTVIGPG-GATLSGGQRQRIALARALY 470 (544)
T ss_pred Ccccccc-cHHHHHhccCC-----CCCHHHHHHHHHHhChHHHHHhC--ccccccccCCC-cCCCCHHHHHHHHHHHHHh
Confidence 9999985 99999986421 1222221 12234455544 56678887754 5679999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHHH
Q 008534 312 INPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (562)
Q Consensus 312 ~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~~ 385 (562)
++|++|||||||++||+.++..+.+.|+++..+|+|+|++||+++ ..+.||+|++|++|++++.|+++++++
T Consensus 471 ~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~--~~~~~d~i~~l~~G~i~~~g~~~~l~~ 542 (544)
T TIGR01842 471 GDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPS--LLGCVDKILVLQDGRIARFGERDEVLA 542 (544)
T ss_pred cCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHH--HHHhCCEEEEEECCEEEeeCCHHHHhh
Confidence 999999999999999999999999999998756899999999986 357899999999999999999998754
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-46 Score=369.33 Aligned_cols=209 Identities=27% Similarity=0.473 Sum_probs=178.9
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
+|+++||+++|. ...+++|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++..
T Consensus 1 ~l~~~~l~~~~~------~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~ 72 (216)
T TIGR00960 1 MIRFEQVSKAYP------GGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEK--PTRGKIRFNGQDLTRLRG 72 (216)
T ss_pred CeEEEEEEEEec------CCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEehhhcCh
Confidence 378999999982 112469999999999999999999999999999999999543 568999999998742
Q ss_pred ----hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHH
Q 008534 226 ----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGER 301 (562)
Q Consensus 226 ----~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqr 301 (562)
.+++.++|++|++.+|+.+||+||+.++.... .......++++.++++.+||.+..++. +.+||||||
T Consensus 73 ~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~ 144 (216)
T TIGR00960 73 REIPFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRII---GVPPRDANERVSAALEKVGLEGKAHAL-----PMQLSGGEQ 144 (216)
T ss_pred hHHHHHHHhceEEecCccccccccHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCC-----hhhCCHHHH
Confidence 24578999999999999899999999875432 122334456788999999998766654 468999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeE
Q 008534 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374 (562)
Q Consensus 302 qRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~i 374 (562)
|||+|||||+.+|+||||||||+|||+.++..+.+.|++++++|+|||++||++. .+..+||+|++|++|++
T Consensus 145 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~-~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 145 QRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDIN-LVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEeCCcC
Confidence 9999999999999999999999999999999999999999777899999999975 46678999999999975
|
|
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-46 Score=393.06 Aligned_cols=221 Identities=24% Similarity=0.405 Sum_probs=190.5
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
+|+++||+++|.. ....+++|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++..
T Consensus 1 mi~i~~l~~~y~~----~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~--p~~G~I~~~g~~i~~~~~ 74 (343)
T PRK11153 1 MIELKNISKVFPQ----GGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLER--PTSGRVLVDGQDLTALSE 74 (343)
T ss_pred CEEEEeEEEEeCC----CCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEECCcCCH
Confidence 3789999999821 0124579999999999999999999999999999999999653 568999999998752
Q ss_pred ----hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHH
Q 008534 226 ----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGER 301 (562)
Q Consensus 226 ----~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqr 301 (562)
.+++.||||+|++.+|+.+||+||+.++.... ..+..+..+++.++++.+||.+..++. +.+||||||
T Consensus 75 ~~~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~LSgGq~ 146 (343)
T PRK11153 75 KELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELA---GTPKAEIKARVTELLELVGLSDKADRY-----PAQLSGGQK 146 (343)
T ss_pred HHHHHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCC-----hhhCCHHHH
Confidence 23678999999999999999999999876432 233445556788999999998766654 568999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecCh
Q 008534 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 380 (562)
Q Consensus 302 qRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~ 380 (562)
|||+|||||+.+|+||||||||+|||+.++..+++.|++++++ |+|||++||++. .+.++||+|++|++|++++.|++
T Consensus 147 qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~-~i~~~~d~v~~l~~G~i~~~g~~ 225 (343)
T PRK11153 147 QRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMD-VVKRICDRVAVIDAGRLVEQGTV 225 (343)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCH
Confidence 9999999999999999999999999999999999999999764 899999999975 46788999999999999999999
Q ss_pred HHHH
Q 008534 381 SEAM 384 (562)
Q Consensus 381 ~el~ 384 (562)
+++.
T Consensus 226 ~~~~ 229 (343)
T PRK11153 226 SEVF 229 (343)
T ss_pred HHHH
Confidence 8874
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-46 Score=367.90 Aligned_cols=210 Identities=31% Similarity=0.537 Sum_probs=180.7
Q ss_pred EEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh--hc
Q 008534 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SL 227 (562)
Q Consensus 150 l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--~~ 227 (562)
++++||+++| .++++|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++.. ..
T Consensus 1 l~~~~l~~~~--------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~~~~~ 70 (213)
T cd03259 1 LELKGLSKTY--------GSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLER--PDSGEILIDGRDVTGVPPE 70 (213)
T ss_pred CeeeeeEEEe--------CCeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEcCcCchh
Confidence 4689999998 23579999999999999999999999999999999999643 568999999998753 23
Q ss_pred cCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHH
Q 008534 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (562)
Q Consensus 228 ~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA 307 (562)
++.++||+|++.+++.+||+||+.++.... ........+++.++++.++|.+..++. +..|||||||||+||
T Consensus 71 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrl~la 142 (213)
T cd03259 71 RRNIGMVFQDYALFPHLTVAENIAFGLKLR---GVPKAEIRARVRELLELVGLEGLLNRY-----PHELSGGQQQRVALA 142 (213)
T ss_pred hccEEEEcCchhhccCCcHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhcC-----hhhCCHHHHHHHHHH
Confidence 567999999999998899999999875432 122344456688899999998766654 468999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEec
Q 008534 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (562)
Q Consensus 308 raLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G 378 (562)
|||+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++||++. .+.++||+|++|++|++++.|
T Consensus 143 ~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 143 RALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQE-EALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999999999999999976 4899999999975 467889999999999998765
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-46 Score=372.28 Aligned_cols=219 Identities=30% Similarity=0.483 Sum_probs=186.2
Q ss_pred EEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh----
Q 008534 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (562)
Q Consensus 150 l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~---- 225 (562)
|+++||++.| +++++|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++..
T Consensus 1 l~~~~l~~~~--------~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~ 70 (236)
T cd03219 1 LEVRGLTKRF--------GGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLR--PTSGSVLFDGEDITGLPPH 70 (236)
T ss_pred CeeeeeEEEE--------CCEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCC--CCCceEEECCEECCCCCHH
Confidence 4689999998 23569999999999999999999999999999999999653 568999999998753
Q ss_pred h-ccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCC-------ccHHHHHHHHHHHHHHcCCCccccccccCcccCCCC
Q 008534 226 S-LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNT-------LTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVS 297 (562)
Q Consensus 226 ~-~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~-------~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LS 297 (562)
. .++.++||+|++.+|+.+||+||+.++........ .......+++.++++.+||.+..++. +++||
T Consensus 71 ~~~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS 145 (236)
T cd03219 71 EIARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRP-----AGELS 145 (236)
T ss_pred HHHhcCEEEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCC-----hhhCC
Confidence 1 24569999999999999999999998754321110 01233455788899999998766554 56899
Q ss_pred hhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEe
Q 008534 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (562)
Q Consensus 298 GGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~ 377 (562)
|||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++.|+|||++||++. .+..+||+|++|++|++++.
T Consensus 146 gG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~-~~~~~~d~i~~l~~G~i~~~ 224 (236)
T cd03219 146 YGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMD-VVMSLADRVTVLDQGRVIAE 224 (236)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEeCCEEEee
Confidence 99999999999999999999999999999999999999999999877899999999976 46788999999999999999
Q ss_pred cChHHHH
Q 008534 378 GKASEAM 384 (562)
Q Consensus 378 G~~~el~ 384 (562)
|+++++.
T Consensus 225 ~~~~~~~ 231 (236)
T cd03219 225 GTPDEVR 231 (236)
T ss_pred cCHHHhc
Confidence 9988763
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-48 Score=441.64 Aligned_cols=356 Identities=23% Similarity=0.327 Sum_probs=250.6
Q ss_pred HHHHHHHHHHHHHHHhhcCCCccccccccCCCCcchhhhhhhhhhhcCCCcccccccceeeeeecccccccccccccchh
Q 008534 10 LARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSGA 89 (562)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 89 (562)
..+..+++-++..+...|.+.+.+|+|+++.+....+++.+..........+.....+.........+.-..+.-++.|+
T Consensus 305 ~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~ 384 (694)
T TIGR01846 305 RVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVTNLGNIAGQAIELIQKLTFAILLWFGA 384 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 44455666677888889999999999999999999988887766554332211111010000000111112233456888
Q ss_pred hhhhhhhhhhhhhcccccCCCCccccccCCC----------CCCCCCccccccccCCCC-CCCCCCCCceeEEEEeEEEE
Q 008534 90 ALSRASSASLGLSFSFTGFTMPPDEIADSKP----------FSDDDIPEDIEAGTRERP-KFQTEPTLPIYLKFTDVTYK 158 (562)
Q Consensus 90 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~nvs~~ 158 (562)
.++..+..+.|.+.+|..+............ .+..++...++....... .....+.....|+++||+|+
T Consensus 385 ~lv~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~~~~~~~~~~~i~~~~vsf~ 464 (694)
T TIGR01846 385 HLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEPRSAGLAALPELRGAITFENIRFR 464 (694)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCCCCCCCCCCCCeEEEEEEEEE
Confidence 8888888888888877665322211110000 000111111111100000 00011222346999999999
Q ss_pred EeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh----hccCcEEEE
Q 008534 159 VILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFV 234 (562)
Q Consensus 159 y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~----~~~~~igyV 234 (562)
|+ ...+++|+|+||+|++|+.+||+|+||||||||+++|+|. ++ +.+|+|++||.++.+ .+|+.|+||
T Consensus 465 y~------~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~-~~-p~~G~I~idg~~i~~~~~~~~r~~i~~v 536 (694)
T TIGR01846 465 YA------PDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRL-YT-PQHGQVLVDGVDLAIADPAWLRRQMGVV 536 (694)
T ss_pred cC------CCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcC-CC-CCCceEEECCEehhhCCHHHHHHhCeEE
Confidence 83 2245799999999999999999999999999999999985 44 458999999999863 578899999
Q ss_pred ccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHH-----HHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHH
Q 008534 235 TQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKE-----KRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNE 309 (562)
Q Consensus 235 ~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~-----~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAra 309 (562)
+|++.+|+ .|++|||.++. + ..+.++.. ..+++.++. +++.+||.+|+. ..+||||||||++||||
T Consensus 537 ~q~~~lf~-~ti~eNi~~~~----~-~~~~~~i~~a~~~~~l~~~i~~--lp~gl~t~i~~~-g~~LSgGq~qri~lARa 607 (694)
T TIGR01846 537 LQENVLFS-RSIRDNIALCN----P-GAPFEHVIHAAKLAGAHDFISE--LPQGYNTEVGEK-GANLSGGQRQRIAIARA 607 (694)
T ss_pred ccCCeehh-hhHHHHHhcCC----C-CCCHHHHHHHHHHcChHHHHHh--CcCccCcEecCC-CCCCCHHHHHHHHHHHH
Confidence 99999997 59999998753 1 12222222 122333433 466789988765 46799999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHHH
Q 008534 310 IIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (562)
Q Consensus 310 Ll~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~~ 385 (562)
|+++|+||||||||++||+.++..+.+.|+++. .++|+|++||+++. ...||+|++|++|++++.|+++++++
T Consensus 608 ll~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~--~~~~d~ii~l~~G~i~~~g~~~~l~~ 680 (694)
T TIGR01846 608 LVGNPRILIFDEATSALDYESEALIMRNMREIC-RGRTVIIIAHRLST--VRACDRIIVLEKGQIAESGRHEELLA 680 (694)
T ss_pred HHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEeCChHH--HHhCCEEEEEeCCEEEEeCCHHHHHH
Confidence 999999999999999999999999999999985 58999999999864 46799999999999999999999874
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-46 Score=395.27 Aligned_cols=217 Identities=28% Similarity=0.485 Sum_probs=190.7
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh--h
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--S 226 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--~ 226 (562)
.|+++||+++| +++.+|+|+||+|++||+++|+|||||||||||++|+|.+. +++|+|.++|+++.. .
T Consensus 3 ~l~i~~l~~~~--------~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~--p~~G~I~~~g~~i~~~~~ 72 (369)
T PRK11000 3 SVTLRNVTKAY--------GDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLED--ITSGDLFIGEKRMNDVPP 72 (369)
T ss_pred EEEEEEEEEEe--------CCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEECCCCCH
Confidence 48999999998 24579999999999999999999999999999999999543 568999999998753 2
Q ss_pred ccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHH
Q 008534 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (562)
Q Consensus 227 ~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~I 306 (562)
.++.|+||+|++.+|+++||+||+.|+...+ .....+..+++.++++.++|.+..++. +.+|||||||||+|
T Consensus 73 ~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~lgL~~~~~~~-----~~~LSgGq~QRvaL 144 (369)
T PRK11000 73 AERGVGMVFQSYALYPHLSVAENMSFGLKLA---GAKKEEINQRVNQVAEVLQLAHLLDRK-----PKALSGGQRQRVAI 144 (369)
T ss_pred hHCCEEEEeCCcccCCCCCHHHHHHhHHhhc---CCCHHHHHHHHHHHHHHcCChhhhcCC-----hhhCCHHHHHHHHH
Confidence 3567999999999999999999999986532 223445566789999999998766654 56899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHH
Q 008534 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (562)
Q Consensus 307 AraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~ 384 (562)
||||+.+|+||||||||+|||+.++..+.+.|+++.++ |.|+|++||++. ++..+||+|++|++|++++.|+++++.
T Consensus 145 AraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~-~~~~~~d~i~vl~~G~i~~~g~~~~i~ 222 (369)
T PRK11000 145 GRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDAGRVAQVGKPLELY 222 (369)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999999999999999765 899999999975 477899999999999999999998875
|
|
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-46 Score=381.22 Aligned_cols=234 Identities=31% Similarity=0.448 Sum_probs=193.9
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCC----
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---- 224 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~---- 224 (562)
+|+++||+|.|... ....+.+|+||||+|++||+++|+||||||||||+++|+|.+. +.+|+|+++|.++.
T Consensus 1 mi~~~~v~~~y~~~---~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~ 75 (288)
T PRK13643 1 MIKFEKVNYTYQPN---SPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQ--PTEGKVTVGDIVVSSTSK 75 (288)
T ss_pred CEEEEEEEEEeCCC---CcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCC--CCCcEEEECCEECccccc
Confidence 48899999998310 0012469999999999999999999999999999999999653 56899999999874
Q ss_pred ----hhccCcEEEEccCC--CCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCC-ccccccccCcccCCCC
Q 008534 225 ----KSLKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVS 297 (562)
Q Consensus 225 ----~~~~~~igyV~Q~~--~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~~LS 297 (562)
..+++.||||+|++ .+|+ .||.||+.|+.... ..++.+.++++.++++.++|. +..++ .++.||
T Consensus 76 ~~~~~~~~~~ig~v~q~~~~~l~~-~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~-----~~~~LS 146 (288)
T PRK13643 76 QKEIKPVRKKVGVVFQFPESQLFE-ETVLKDVAFGPQNF---GIPKEKAEKIAAEKLEMVGLADEFWEK-----SPFELS 146 (288)
T ss_pred cccHHHHHhhEEEEecCcchhccc-chHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCChhhccC-----CcccCC
Confidence 13467899999987 5675 69999999876432 234555667788999999995 34443 457899
Q ss_pred hhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEe
Q 008534 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (562)
Q Consensus 298 GGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~ 377 (562)
||||||++|||+|+.+|+||||||||+|||+.++..+.+.|++++++|+|||++||++. .+..+||+|++|++|++++.
T Consensus 147 gGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~-~~~~~~dri~~l~~G~i~~~ 225 (288)
T PRK13643 147 GGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMD-DVADYADYVYLLEKGHIISC 225 (288)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEE
Confidence 99999999999999999999999999999999999999999999877999999999975 46688999999999999999
Q ss_pred cChHHHHH---HHHhcCCCCCCC
Q 008534 378 GKASEAMA---YFSSIGCSPQIA 397 (562)
Q Consensus 378 G~~~el~~---~f~~~g~~~~~~ 397 (562)
|+++++.. .+...|+.+|..
T Consensus 226 g~~~~~~~~~~~~~~~~~~~p~~ 248 (288)
T PRK13643 226 GTPSDVFQEVDFLKAHELGVPKA 248 (288)
T ss_pred CCHHHHHcCHHHHHHcCCCCChH
Confidence 99998743 344566666543
|
|
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-46 Score=371.81 Aligned_cols=220 Identities=25% Similarity=0.459 Sum_probs=186.4
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh--h
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--S 226 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--~ 226 (562)
.|+++||++.| +++++|+||||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++.. .
T Consensus 2 ~l~~~~l~~~~--------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~ 71 (239)
T cd03296 2 SIEVRNVSKRF--------GDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLER--PDSGTILFGGEDATDVPV 71 (239)
T ss_pred EEEEEeEEEEE--------CCEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECCcCCc
Confidence 48899999998 23579999999999999999999999999999999999543 468999999998743 2
Q ss_pred ccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCC-CCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHH
Q 008534 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLP-NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC 305 (562)
Q Consensus 227 ~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ 305 (562)
.++.++||+|++.+++.+||+||+.++...... .........+++.++++.++|.+..++. +.+|||||||||+
T Consensus 72 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl~ 146 (239)
T cd03296 72 QERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRY-----PAQLSGGQRQRVA 146 (239)
T ss_pred cccceEEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcC-----hhhCCHHHHHHHH
Confidence 346799999999999889999999987533210 0012233445678899999997665554 4689999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHH
Q 008534 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (562)
Q Consensus 306 IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~ 384 (562)
|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. .+...||+|++|++|++++.|+++++.
T Consensus 147 la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 225 (239)
T cd03296 147 LARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQE-EALEVADRVVVMNKGRIEQVGTPDEVY 225 (239)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCeEEEecCHHHHh
Confidence 999999999999999999999999999999999999765 899999999975 467889999999999999999988763
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-46 Score=370.06 Aligned_cols=220 Identities=27% Similarity=0.425 Sum_probs=187.2
Q ss_pred EEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh----
Q 008534 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (562)
Q Consensus 150 l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~---- 225 (562)
|+++|++++|..+ ...+++|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++..
T Consensus 2 i~~~~l~~~~~~~----~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~ 75 (233)
T cd03258 2 IELKNVSKVFGDT----GGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLER--PTSGSVLVDGTDLTLLSGK 75 (233)
T ss_pred eEEecceEEccCC----CCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcccCCHH
Confidence 7899999998210 011379999999999999999999999999999999999653 568999999998742
Q ss_pred ---hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHH
Q 008534 226 ---SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (562)
Q Consensus 226 ---~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrq 302 (562)
..++.++|++|++.+|+.+|++||+.++...+ ..........+.++++.++|.+..+.. +..|||||||
T Consensus 76 ~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~q 147 (233)
T cd03258 76 ELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIA---GVPKAEIEERVLELLELVGLEDKADAY-----PAQLSGGQKQ 147 (233)
T ss_pred HHHHHHhheEEEccCcccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhhhhcC-----hhhCCHHHHH
Confidence 23567999999999999899999999875432 123344456788899999998766654 4689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChH
Q 008534 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKAS 381 (562)
Q Consensus 303 Rv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~ 381 (562)
||+|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. .+..+||++++|++|++++.|+++
T Consensus 148 rv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~ 226 (233)
T cd03258 148 RVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEME-VVKRICDRVAVMEKGEVVEEGTVE 226 (233)
T ss_pred HHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEecCHH
Confidence 999999999999999999999999999999999999999765 899999999975 467889999999999999999988
Q ss_pred HHH
Q 008534 382 EAM 384 (562)
Q Consensus 382 el~ 384 (562)
++.
T Consensus 227 ~~~ 229 (233)
T cd03258 227 EVF 229 (233)
T ss_pred HHh
Confidence 763
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-46 Score=369.51 Aligned_cols=216 Identities=27% Similarity=0.512 Sum_probs=186.1
Q ss_pred EEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh----
Q 008534 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (562)
Q Consensus 150 l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~---- 225 (562)
|+++||+++| +++.+|+|+||++++|++++|+||||||||||+++|+|.+. +.+|+|.++|.++..
T Consensus 1 l~~~~l~~~~--------~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~ 70 (232)
T cd03218 1 LRAENLSKRY--------GKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVK--PDSGKILLDGQDITKLPMH 70 (232)
T ss_pred CeEEEEEEEe--------CCEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEecccCCHh
Confidence 4689999998 24579999999999999999999999999999999999653 568999999998642
Q ss_pred h-ccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHH
Q 008534 226 S-LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (562)
Q Consensus 226 ~-~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 304 (562)
. .++.++|++|++.+|+.+||+||+.+....+ .........++.++++.+++.+..++. +..|||||||||
T Consensus 71 ~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl 142 (232)
T cd03218 71 KRARLGIGYLPQEASIFRKLTVEENILAVLEIR---GLSKKEREEKLEELLEEFHITHLRKSK-----ASSLSGGERRRV 142 (232)
T ss_pred HHHhccEEEecCCccccccCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCC-----hhhCCHHHHHHH
Confidence 1 2456999999999999999999999865332 122334455778899999998766654 468999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHH
Q 008534 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (562)
Q Consensus 305 ~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~ 384 (562)
+|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+.+.||+|++|++|++++.|+++++.
T Consensus 143 ~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 221 (232)
T cd03218 143 EIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVR-ETLSITDRAYIIYEGKVLAEGTPEEIA 221 (232)
T ss_pred HHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCeEEEEeCHHHhh
Confidence 9999999999999999999999999999999999999877899999999976 477899999999999999999988763
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-45 Score=379.45 Aligned_cols=222 Identities=27% Similarity=0.470 Sum_probs=187.1
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
.|+++||++.|... ....+++|+||||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++..
T Consensus 2 ~l~~~~l~~~y~~~---~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~ 76 (287)
T PRK13637 2 SIKIENLTHIYMEG---TPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLK--PTSGKIIIDGVDITDKKV 76 (287)
T ss_pred EEEEEEEEEECCCC---CccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCccEEEECCEECCCcCc
Confidence 38999999998310 0112579999999999999999999999999999999999653 568999999998742
Q ss_pred ---hccCcEEEEccCC--CCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCC--ccccccccCcccCCCCh
Q 008534 226 ---SLKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE--RCQDTMIGGSFVRGVSG 298 (562)
Q Consensus 226 ---~~~~~igyV~Q~~--~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~--~~~~t~vg~~~~~~LSG 298 (562)
..+++||||||++ .+| .+||+||+.|+.... ...+.+..+++.++++.+||. +..++ .++.|||
T Consensus 77 ~~~~~~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~~~LSg 147 (287)
T PRK13637 77 KLSDIRKKVGLVFQYPEYQLF-EETIEKDIAFGPINL---GLSEEEIENRVKRAMNIVGLDYEDYKDK-----SPFELSG 147 (287)
T ss_pred cHHHHhhceEEEecCchhccc-cccHHHHHHhHHHHC---CCCHHHHHHHHHHHHHHcCCCchhhccC-----CcccCCH
Confidence 3467899999997 345 479999999875432 234555667788999999996 44444 4578999
Q ss_pred hHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEe
Q 008534 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (562)
Q Consensus 299 GqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~ 377 (562)
|||||++|||||+.+|+||||||||+|||+.++..+++.|++++++ |+|||++||++. .+..+||+|++|++|++++.
T Consensus 148 Gq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~drv~~l~~G~i~~~ 226 (287)
T PRK13637 148 GQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSME-DVAKLADRIIVMNKGKCELQ 226 (287)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999999765 899999999975 46678999999999999999
Q ss_pred cChHHHHH
Q 008534 378 GKASEAMA 385 (562)
Q Consensus 378 G~~~el~~ 385 (562)
|+++++.+
T Consensus 227 g~~~~~~~ 234 (287)
T PRK13637 227 GTPREVFK 234 (287)
T ss_pred CCHHHHHh
Confidence 99988753
|
|
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-46 Score=366.39 Aligned_cols=216 Identities=30% Similarity=0.473 Sum_probs=183.0
Q ss_pred EEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhccC
Q 008534 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKS 229 (562)
Q Consensus 150 l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~~ 229 (562)
|+++|+++.|.. ....+++|+|+||+|++|++++|+||||||||||+++|+|.+. +.+|+|.++|.++.. .++
T Consensus 1 l~~~~l~~~~~~----~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~-~~~ 73 (220)
T cd03293 1 LEVRNVSKTYGG----GGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLER--PTSGEVLVDGEPVTG-PGP 73 (220)
T ss_pred CeEEEEEEEcCC----CCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECcc-ccC
Confidence 468999998821 0011579999999999999999999999999999999999643 468999999998753 467
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHH
Q 008534 230 KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNE 309 (562)
Q Consensus 230 ~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAra 309 (562)
.++||+|++.+|+.+||+||+.++...+ ........+++.++++.++|.+..++. +..||||||||++||||
T Consensus 74 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrl~la~a 145 (220)
T cd03293 74 DRGYVFQQDALLPWLTVLDNVALGLELQ---GVPKAEARERAEELLELVGLSGFENAY-----PHQLSGGMRQRVALARA 145 (220)
T ss_pred cEEEEecccccccCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCC-----cccCCHHHHHHHHHHHH
Confidence 7999999999999899999999875432 123334456788999999998766654 46899999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCcEEEEEecCCChHHHhcCCEEEEEc--CCeEEEecChH
Q 008534 310 IIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLG--KGSLLYFGKAS 381 (562)
Q Consensus 310 Ll~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~Tvii~tH~~~~~i~~~~D~i~vL~--~G~iv~~G~~~ 381 (562)
|+.+|++|||||||+|||+.++..+.+.|+++.+ .|+|||++||++. .+...||++++|+ +|++++.++.+
T Consensus 146 l~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~~~G~i~~~~~~~ 219 (220)
T cd03293 146 LAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDID-EAVFLADRVVVLSARPGRIVAEVEVD 219 (220)
T ss_pred HHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEEECCCCEEEEEEEec
Confidence 9999999999999999999999999999999865 4899999999975 4678899999999 79999988753
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-46 Score=364.64 Aligned_cols=210 Identities=30% Similarity=0.573 Sum_probs=182.3
Q ss_pred EEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhccC
Q 008534 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKS 229 (562)
Q Consensus 150 l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~~ 229 (562)
|+++|+++.| .++.+|+|+||+|++|++++|+||||||||||+++|+|.+. +.+|+|.++|.++....++
T Consensus 1 l~~~~l~~~~--------~~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~ 70 (210)
T cd03269 1 LEVENVTKRF--------GRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIIL--PDSGEVLFDGKPLDIAARN 70 (210)
T ss_pred CEEEEEEEEE--------CCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCCchhHHHHc
Confidence 4689999988 24579999999999999999999999999999999999543 5689999999987655667
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHH
Q 008534 230 KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNE 309 (562)
Q Consensus 230 ~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAra 309 (562)
.++|++|++.+++.+||+||+.+....+ ........+++.++++.+++.+..++. +.+|||||||||+||||
T Consensus 71 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl~la~a 142 (210)
T cd03269 71 RIGYLPEERGLYPKMKVIDQLVYLAQLK---GLKKEEARRRIDEWLERLELSEYANKR-----VEELSKGNQQKVQFIAA 142 (210)
T ss_pred cEEEeccCCcCCcCCcHHHHHHHHHHHc---CCChHHHHHHHHHHHHHcCChHHHhCc-----HhhCCHHHHHHHHHHHH
Confidence 8999999999999899999999865432 123344456788899999998766653 46899999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEec
Q 008534 310 IIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (562)
Q Consensus 310 Ll~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G 378 (562)
|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+.++||++++|++|++++.|
T Consensus 143 l~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 143 VIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQME-LVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred HhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhhhEEEEEeCCEEEecC
Confidence 99999999999999999999999999999999877899999999975 466789999999999998765
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-48 Score=431.89 Aligned_cols=350 Identities=18% Similarity=0.231 Sum_probs=235.2
Q ss_pred HHHHHHHHHHHHHHHhhcCCCccccccccCCCCcchhhhhhhhhhhcCCCccccccccee-eeeecccccccccccccch
Q 008534 10 LARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTH-IRKSRSAQLKLELDEVSSG 88 (562)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g 88 (562)
..+..++...+......+.....+|+|+|+.+....+++.+................+.. .......+.-+.+.-+..+
T Consensus 192 ~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (592)
T PRK10790 192 IVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARMQTLRLDGFLLRPLLSLFSALILCGLLMLF 271 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445666777777888888899999999987777777755443322211000000000 0000000110111111122
Q ss_pred hhhhhhhhhhhhhhcccccCCCCc----cccccC------CCCCCCCCccccccccCCCCCCCCCCCCceeEEEEeEEEE
Q 008534 89 AALSRASSASLGLSFSFTGFTMPP----DEIADS------KPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLKFTDVTYK 158 (562)
Q Consensus 89 ~~~~~~~~~~~g~~~~~~~~~~~~----~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~nvs~~ 158 (562)
+. ...+..+.|.++++..+.... .++... ...+..++...++..... ......+.....++|+||+|.
T Consensus 272 ~~-~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~-~~~~~~~~~~~~i~~~~v~f~ 349 (592)
T PRK10790 272 GF-SASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDGPRQQ-YGNDDRPLQSGRIDIDNVSFA 349 (592)
T ss_pred HH-HHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc-CCCCccCCCCCeEEEEEEEEE
Confidence 22 345666777766665432211 111100 000000011111100000 000001111235999999999
Q ss_pred EeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh----hccCcEEEE
Q 008534 159 VILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFV 234 (562)
Q Consensus 159 y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~----~~~~~igyV 234 (562)
|+ .++++|+|+||+|++||.+||+|+||||||||+++|+|. ++ |.+|+|.+||.++.. .++++|+||
T Consensus 350 y~-------~~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl-~~-p~~G~I~idg~~i~~~~~~~l~~~i~~v 420 (592)
T PRK10790 350 YR-------DDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGY-YP-LTEGEIRLDGRPLSSLSHSVLRQGVAMV 420 (592)
T ss_pred eC-------CCCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcc-cC-CCCceEEECCEEhhhCCHHHHHhheEEE
Confidence 83 135699999999999999999999999999999999985 44 458999999998853 578999999
Q ss_pred ccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcC-------CCccccccccCcccCCCChhHHHHHHHH
Q 008534 235 TQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG-------LERCQDTMIGGSFVRGVSGGERKRVCIG 307 (562)
Q Consensus 235 ~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~t~vg~~~~~~LSGGqrqRv~IA 307 (562)
+|++.+|++ |++|||.++. ..+++ ++.++++.+| |++.+||.+|.. ...||||||||++||
T Consensus 421 ~Q~~~lF~~-Ti~~NI~~~~------~~~d~----~i~~a~~~~gl~~~i~~lp~Gldt~i~e~-g~~LSGGqrQRialA 488 (592)
T PRK10790 421 QQDPVVLAD-TFLANVTLGR------DISEE----QVWQALETVQLAELARSLPDGLYTPLGEQ-GNNLSVGQKQLLALA 488 (592)
T ss_pred ccCCccccc-hHHHHHHhCC------CCCHH----HHHHHHHHcCcHHHHHhccccccccccCC-CCCCCHHHHHHHHHH
Confidence 999999986 9999999863 11222 2344444444 466788988864 457999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHHH
Q 008534 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (562)
Q Consensus 308 raLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~~ 385 (562)
|||+++|+|||||||||+||+.++..+.+.|+++.+ ++|+|++||+++. ...||+|++|++|++++.|+++++++
T Consensus 489 RaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~-~~tvIivtHr~~~--l~~~D~ii~l~~G~i~~~G~~~~L~~ 563 (592)
T PRK10790 489 RVLVQTPQILILDEATANIDSGTEQAIQQALAAVRE-HTTLVVIAHRLST--IVEADTILVLHRGQAVEQGTHQQLLA 563 (592)
T ss_pred HHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecchHH--HHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999999999999999999999999864 6999999999853 56799999999999999999999864
|
|
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-46 Score=366.19 Aligned_cols=216 Identities=29% Similarity=0.496 Sum_probs=185.2
Q ss_pred EEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---h
Q 008534 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---S 226 (562)
Q Consensus 150 l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~---~ 226 (562)
|+++||++.|. ...+++|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.++.. .
T Consensus 1 l~~~~l~~~~~------~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~ 72 (220)
T cd03263 1 LQIRNLTKTYK------KGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELR--PTSGTAYINGYSIRTDRKA 72 (220)
T ss_pred CEEEeeEEEeC------CCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEecccchHH
Confidence 47899999982 112579999999999999999999999999999999999543 568999999998742 3
Q ss_pred ccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHH
Q 008534 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (562)
Q Consensus 227 ~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~I 306 (562)
+++.++||+|++.+++.+||+||+.+..... ........+++.++++.++|.+..++. +.+|||||||||+|
T Consensus 73 ~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~l 144 (220)
T cd03263 73 ARQSLGYCPQFDALFDELTVREHLRFYARLK---GLPKSEIKEEVELLLRVLGLTDKANKR-----ARTLSGGMKRKLSL 144 (220)
T ss_pred HhhhEEEecCcCCccccCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHHhCh-----hhhCCHHHHHHHHH
Confidence 5677999999999998899999999865432 123334455788899999998766654 46899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHH
Q 008534 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (562)
Q Consensus 307 AraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el 383 (562)
||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++.. +.+.||++++|++|++++.|+++++
T Consensus 145 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~~-~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 145 AIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK-GRSIILTTHSMDE-AEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred HHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEcCCHHH-HHHhcCEEEEEECCEEEecCCHHHc
Confidence 9999999999999999999999999999999999876 6999999999764 6678999999999999999998764
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-48 Score=429.84 Aligned_cols=354 Identities=20% Similarity=0.235 Sum_probs=247.3
Q ss_pred HHHHHHHHHHHHHHHhhcCCCccccccccCCCCcchhhhhhhhhhhcCCCcccccccceeeeeecccccccccccccchh
Q 008534 10 LARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSGA 89 (562)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 89 (562)
..++.++..++..+...|.+.+.+|+|+|+.+....++|.+..........+.....+...........-..+..+..|+
T Consensus 164 ~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~ 243 (569)
T PRK10789 164 RFKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQSALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIGGGS 243 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555667777888889999999999999999998888887655443322211111111000000111111233445778
Q ss_pred hhhhhhhhhhhhhcccccCCCCccccccCCC----------CCCCCCccccccccCCCCCCCCCCCCceeEEEEeEEEEE
Q 008534 90 ALSRASSASLGLSFSFTGFTMPPDEIADSKP----------FSDDDIPEDIEAGTRERPKFQTEPTLPIYLKFTDVTYKV 159 (562)
Q Consensus 90 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~nvs~~y 159 (562)
.++..+..+.|.++++..+............ .+..++...++..+...+.....+.....++++|++|+|
T Consensus 244 ~lv~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~~~~~~~~~~~~I~~~~v~~~y 323 (569)
T PRK10789 244 WMVVNGSLTLGQLTSFVMYLGLMIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVVKDGSEPVPEGRGELDVNIRQFTY 323 (569)
T ss_pred HHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCCCCCCCCCcEEEEEEEEEC
Confidence 8888888888888777665432221110000 000001111111000000000011112369999999998
Q ss_pred eecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh----hccCcEEEEc
Q 008534 160 ILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVT 235 (562)
Q Consensus 160 ~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~----~~~~~igyV~ 235 (562)
+ ..++++|+|+||++++|++++|+||||||||||+++|+|. ++ +.+|+|.+||.++.. .+++.|+||+
T Consensus 324 ~------~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~-~~-p~~G~i~~~g~~~~~~~~~~~~~~i~~v~ 395 (569)
T PRK10789 324 P------QTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRH-FD-VSEGDIRFHDIPLTKLQLDSWRSRLAVVS 395 (569)
T ss_pred C------CCCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcc-cC-CCCCEEEECCEEHhhCCHHHHHhheEEEc
Confidence 3 1245799999999999999999999999999999999985 43 458999999998753 5678899999
Q ss_pred cCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHc-------CCCccccccccCcccCCCChhHHHHHHHHH
Q 008534 236 QDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINEL-------GLERCQDTMIGGSFVRGVSGGERKRVCIGN 308 (562)
Q Consensus 236 Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~l-------gL~~~~~t~vg~~~~~~LSGGqrqRv~IAr 308 (562)
|++.+|+. |++|||.++.. ..++++. .++++.. .+++..||.+|+. ...||||||||++|||
T Consensus 396 q~~~lf~~-ti~~Ni~~~~~-----~~~~~~~----~~~~~~~~l~~~i~~lp~gl~t~~~~~-g~~LSgGq~qRi~lAR 464 (569)
T PRK10789 396 QTPFLFSD-TVANNIALGRP-----DATQQEI----EHVARLASVHDDILRLPQGYDTEVGER-GVMLSGGQKQRISIAR 464 (569)
T ss_pred cCCeeccc-cHHHHHhcCCC-----CCCHHHH----HHHHHHcCCHHHHHhCcCcccceecCC-CCcCCHHHHHHHHHHH
Confidence 99999975 99999987631 1223222 2222222 4567788988765 5679999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHHH
Q 008534 309 EIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (562)
Q Consensus 309 aLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~~ 385 (562)
||+++|+||||||||++||+.++..+.+.|+++. +++|+|++||+++. ...||+|++|++|++++.|+++++++
T Consensus 465 all~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tii~itH~~~~--~~~~d~i~~l~~G~i~~~g~~~~l~~ 538 (569)
T PRK10789 465 ALLLNAEILILDDALSAVDGRTEHQILHNLRQWG-EGRTVIISAHRLSA--LTEASEILVMQHGHIAQRGNHDQLAQ 538 (569)
T ss_pred HHhcCCCEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEecchhH--HHcCCEEEEEeCCEEEEecCHHHHHH
Confidence 9999999999999999999999999999999875 58999999999864 56799999999999999999999864
|
|
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-46 Score=365.05 Aligned_cols=214 Identities=30% Similarity=0.518 Sum_probs=182.6
Q ss_pred EEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---h
Q 008534 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---S 226 (562)
Q Consensus 150 l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~---~ 226 (562)
|+++||+++|..+ ....++|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.++.. .
T Consensus 2 l~~~~v~~~~~~~----~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~ 75 (218)
T cd03266 2 ITADALTKRFRDV----KKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLE--PDAGFATVDGFDVVKEPAE 75 (218)
T ss_pred eEEEEEEEecCCC----CccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCCceEEECCEEcccCHHH
Confidence 7899999998210 011269999999999999999999999999999999999543 568999999998753 3
Q ss_pred ccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHH
Q 008534 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (562)
Q Consensus 227 ~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~I 306 (562)
+++.++|++|++.+|+.+||+||+.+....+ .....+..+++.++++.+||.+..+.. +..||||||||++|
T Consensus 76 ~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~l 147 (218)
T cd03266 76 ARRRLGFVSDSTGLYDRLTARENLEYFAGLY---GLKGDELTARLEELADRLGMEELLDRR-----VGGFSTGMRQKVAI 147 (218)
T ss_pred HHhhEEEecCCcccCcCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHHhhh-----hhhcCHHHHHHHHH
Confidence 5678999999999999899999998865432 123444556788999999998766654 46899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEec
Q 008534 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (562)
Q Consensus 307 AraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G 378 (562)
||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+..+||++++|++|++++.|
T Consensus 148 aral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 148 ARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQ-EVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred HHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhcCEEEEEECCEEeecC
Confidence 99999999999999999999999999999999999777999999999975 467889999999999998764
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-46 Score=368.61 Aligned_cols=217 Identities=26% Similarity=0.441 Sum_probs=182.6
Q ss_pred EEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC---CCCccEEEECCEeCCh-
Q 008534 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME---PTVGGSITYNDHPYSK- 225 (562)
Q Consensus 150 l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~---~~~~G~I~i~G~~~~~- 225 (562)
|+++||+++| +.+++|+|+||+|++||+++|+||||||||||+++|+|.++. ++.+|+|.++|.++..
T Consensus 1 i~~~~l~~~~--------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~ 72 (227)
T cd03260 1 IELRDLNVYY--------GDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDL 72 (227)
T ss_pred CEEEEEEEEc--------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhc
Confidence 4689999988 245799999999999999999999999999999999996511 3568999999998642
Q ss_pred -----hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhH
Q 008534 226 -----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGE 300 (562)
Q Consensus 226 -----~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGq 300 (562)
.+++.++|++|++.+| .+||+||+.++..... .....+.++++.++++.+||.+..+..+. +.+|||||
T Consensus 73 ~~~~~~~~~~i~~~~q~~~~~-~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~~~LSgG~ 146 (227)
T cd03260 73 DVDVLELRRRVGMVFQKPNPF-PGSIYDNVAYGLRLHG--IKLKEELDERVEEALRKAALWDEVKDRLH---ALGLSGGQ 146 (227)
T ss_pred chHHHHHHhhEEEEecCchhc-cccHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHcCCChHHhccCC---cccCCHHH
Confidence 2456799999999888 6899999998754321 11122245667889999999866554320 46899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecCh
Q 008534 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 380 (562)
Q Consensus 301 rqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~ 380 (562)
||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++ +|||++||++. .+..+||++++|++|++++.|++
T Consensus 147 ~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~ 224 (227)
T cd03260 147 QQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNMQ-QAARVADRTAFLLNGRLVEFGPT 224 (227)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC-cEEEEEeccHH-HHHHhCCEEEEEeCCEEEEecCc
Confidence 99999999999999999999999999999999999999999876 99999999976 46778999999999999999987
Q ss_pred HH
Q 008534 381 SE 382 (562)
Q Consensus 381 ~e 382 (562)
++
T Consensus 225 ~~ 226 (227)
T cd03260 225 EQ 226 (227)
T ss_pred cc
Confidence 65
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-47 Score=428.63 Aligned_cols=354 Identities=21% Similarity=0.266 Sum_probs=246.4
Q ss_pred HHHHHHHHHHHHHHhhcCCCccccccccCCCCcchhhhhhhhhhhcCCCcccccccceeeeeecccccccccccccchhh
Q 008534 11 ARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSGAA 90 (562)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 90 (562)
.+..++...+..+...+.....+|+|+++.+....+++.+................+.........+.-..+..+..|+.
T Consensus 182 ~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 261 (571)
T TIGR02203 182 SKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGSISSPITQLIASLALAVVLFIALF 261 (571)
T ss_pred HHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566677778888899999999999999888888866654433211100001111001111111123334567777
Q ss_pred hhhhhhhhhhhhcccccCCCCccccccCCC----------CCCCCCccccccccCCCCCCCCCCCCceeEEEEeEEEEEe
Q 008534 91 LSRASSASLGLSFSFTGFTMPPDEIADSKP----------FSDDDIPEDIEAGTRERPKFQTEPTLPIYLKFTDVTYKVI 160 (562)
Q Consensus 91 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~nvs~~y~ 160 (562)
++..+..+.|.++++..+............ .+..++.+.+...+.........+.....++++||+|+|+
T Consensus 262 ~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~ 341 (571)
T TIGR02203 262 QAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDTGTRAIERARGDVEFRNVTFRYP 341 (571)
T ss_pred HHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCeEEEEEEEEEcC
Confidence 777888888887777654332221111000 0000111111111100000000111123699999999983
Q ss_pred ecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCC----hhccCcEEEEcc
Q 008534 161 LKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS----KSLKSKIGFVTQ 236 (562)
Q Consensus 161 ~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~----~~~~~~igyV~Q 236 (562)
..++++|+|+||+|++||.++|+|+||||||||+++|+|.. + +.+|+|.+||.++. +.++++|+||+|
T Consensus 342 ------~~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~-~-~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q 413 (571)
T TIGR02203 342 ------GRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFY-E-PDSGQILLDGHDLADYTLASLRRQVALVSQ 413 (571)
T ss_pred ------CCCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhcc-C-CCCCeEEECCEeHHhcCHHHHHhhceEEcc
Confidence 12457999999999999999999999999999999999954 3 45899999999875 356788999999
Q ss_pred CCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcC-------CCccccccccCcccCCCChhHHHHHHHHHH
Q 008534 237 DDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG-------LERCQDTMIGGSFVRGVSGGERKRVCIGNE 309 (562)
Q Consensus 237 ~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~t~vg~~~~~~LSGGqrqRv~IAra 309 (562)
++.+|+. |++|||.++.. +..+++ ++.++++.+| |++..||.+|+. ...||||||||++||||
T Consensus 414 ~~~lf~~-Ti~~Ni~~~~~----~~~~~~----~i~~~l~~~~l~~~i~~lp~gldt~i~~~-g~~LSgGqrQRiaLARa 483 (571)
T TIGR02203 414 DVVLFND-TIANNIAYGRT----EQADRA----EIERALAAAYAQDFVDKLPLGLDTPIGEN-GVLLSGGQRQRLAIARA 483 (571)
T ss_pred Ccccccc-cHHHHHhcCCC----CCCCHH----HHHHHHHHcChHHHHHhCcCcccceecCC-CCcCCHHHHHHHHHHHH
Confidence 9999975 99999997631 122222 2333444333 466788998865 46799999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHHH
Q 008534 310 IIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (562)
Q Consensus 310 Ll~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~~ 385 (562)
|+++|+||+||||||+||+.++..+.+.|+++. +++|+|++||++. ....||+|++|++|++++.|+++++++
T Consensus 484 ll~~~~illLDEpts~LD~~~~~~i~~~L~~~~-~~~tiIiitH~~~--~~~~~D~ii~l~~g~i~~~g~~~~l~~ 556 (571)
T TIGR02203 484 LLKDAPILILDEATSALDNESERLVQAALERLM-QGRTTLVIAHRLS--TIEKADRIVVMDDGRIVERGTHNELLA 556 (571)
T ss_pred HhcCCCEEEEeCccccCCHHHHHHHHHHHHHHh-CCCEEEEEehhhH--HHHhCCEEEEEeCCEEEeeCCHHHHHH
Confidence 999999999999999999999999999999885 4799999999975 468899999999999999999999863
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-45 Score=381.62 Aligned_cols=218 Identities=25% Similarity=0.454 Sum_probs=191.3
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
.++++|++++| +++.+|+|+||+|++||+++|+||||||||||+++|+|.+. +++|+|.++|.++..
T Consensus 2 ~l~~~~l~~~~--------~~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~--~~~G~i~i~g~~~~~~~~ 71 (301)
T TIGR03522 2 SIRVSSLTKLY--------GTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLP--PDSGSVQVCGEDVLQNPK 71 (301)
T ss_pred EEEEEEEEEEE--------CCEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcccChH
Confidence 48899999998 24579999999999999999999999999999999999643 568999999998753
Q ss_pred hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHH
Q 008534 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC 305 (562)
Q Consensus 226 ~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ 305 (562)
..++.+||+||++.+++.+||.||+.+.+..+ .....+..+++.++++.+||.+..++. ++.|||||||||+
T Consensus 72 ~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~G~~qrv~ 143 (301)
T TIGR03522 72 EVQRNIGYLPEHNPLYLDMYVREYLQFIAGIY---GMKGQLLKQRVEEMIELVGLRPEQHKK-----IGQLSKGYRQRVG 143 (301)
T ss_pred HHHhceEEecCCCCCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcCc-----hhhCCHHHHHHHH
Confidence 35678999999999999999999999876543 223344456788999999998877765 4689999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHHH
Q 008534 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (562)
Q Consensus 306 IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~~ 385 (562)
|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++. ++.++||+|++|++|++++.|+++++..
T Consensus 144 la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiii~sH~l~-~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 221 (301)
T TIGR03522 144 LAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGK-DKTIILSTHIMQ-EVEAICDRVIIINKGKIVADKKLDELSA 221 (301)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHHH
Confidence 99999999999999999999999999999999999865 799999999976 4788999999999999999999999765
Q ss_pred H
Q 008534 386 Y 386 (562)
Q Consensus 386 ~ 386 (562)
.
T Consensus 222 ~ 222 (301)
T TIGR03522 222 A 222 (301)
T ss_pred h
Confidence 3
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-45 Score=362.77 Aligned_cols=210 Identities=27% Similarity=0.505 Sum_probs=181.0
Q ss_pred EEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh--hc
Q 008534 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SL 227 (562)
Q Consensus 150 l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--~~ 227 (562)
|+++||++.| +++++|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++.. ..
T Consensus 1 i~~~~l~~~~--------~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~v~~~g~~~~~~~~~ 70 (213)
T cd03301 1 VELENVTKRF--------GNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEE--PTSGRIYIGGRDVTDLPPK 70 (213)
T ss_pred CEEEeeEEEE--------CCeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECCcCCcc
Confidence 4689999988 23579999999999999999999999999999999999643 568999999998753 23
Q ss_pred cCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHH
Q 008534 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (562)
Q Consensus 228 ~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA 307 (562)
++.++||+|++.+++.+||+||+.++.... .....+..+++.++++.+|+.+..+.. +..||||||||++||
T Consensus 71 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qr~~la 142 (213)
T cd03301 71 DRDIAMVFQNYALYPHMTVYDNIAFGLKLR---KVPKDEIDERVREVAELLQIEHLLDRK-----PKQLSGGQRQRVALG 142 (213)
T ss_pred cceEEEEecChhhccCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHHHHhCC-----hhhCCHHHHHHHHHH
Confidence 457999999999998899999999875432 123344456788899999998766654 468999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEec
Q 008534 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (562)
Q Consensus 308 raLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G 378 (562)
|||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. .+..+||+|++|++|++++.|
T Consensus 143 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 143 RAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQV-EAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEECCEEEecC
Confidence 9999999999999999999999999999999999864 899999999975 467789999999999999876
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-46 Score=350.20 Aligned_cols=214 Identities=26% Similarity=0.460 Sum_probs=185.9
Q ss_pred EEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh--hc
Q 008534 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SL 227 (562)
Q Consensus 150 l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--~~ 227 (562)
|.+.+|.|.|. ..==.++++|++||++||+||||||||||||+|+|... |.+|+|++||++.+. ..
T Consensus 2 l~L~~V~~~y~----------~~~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~--P~~G~i~i~g~d~t~~~P~ 69 (231)
T COG3840 2 LALDDVRFSYG----------HLPMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFET--PASGEILINGVDHTASPPA 69 (231)
T ss_pred ccccceEEeeC----------cceEEEEEeecCCcEEEEECCCCccHHHHHHHHHhccC--CCCceEEEcCeecCcCCcc
Confidence 56788999982 12246789999999999999999999999999999543 458999999999763 45
Q ss_pred cCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHH
Q 008534 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (562)
Q Consensus 228 ~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA 307 (562)
.+-++++||+.+||.++||.+|+.++..-.+ .. .++.+++++.++..+||..+.+.+ +.+|||||||||+||
T Consensus 70 ~RPVSmlFQEnNLFaHLtV~qNigLGl~P~L--kL-~a~~r~~v~~aa~~vGl~~~~~RL-----P~~LSGGqRQRvALA 141 (231)
T COG3840 70 ERPVSMLFQENNLFAHLTVAQNIGLGLSPGL--KL-NAEQREKVEAAAAQVGLAGFLKRL-----PGELSGGQRQRVALA 141 (231)
T ss_pred cCChhhhhhccccchhhhhhhhhcccCCccc--cc-CHHHHHHHHHHHHHhChhhHhhhC-----ccccCchHHHHHHHH
Confidence 6789999999999999999999999863221 12 345566789999999999887765 468999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHH
Q 008534 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (562)
Q Consensus 308 raLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~ 384 (562)
|+|+++-+||+||||+|+|||.-+.+++..+.+++. ++.|++|+||+|++ +.+++|+++++++|+|.+.|+.++++
T Consensus 142 RclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~D-a~~ia~~~~fl~~Gri~~~g~~~~~~ 218 (231)
T COG3840 142 RCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPED-AARIADRVVFLDNGRIAAQGSTQELL 218 (231)
T ss_pred HHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHH-HHHhhhceEEEeCCEEEeeccHHHHh
Confidence 999999999999999999999999999999999975 48999999999875 77899999999999999999988764
|
|
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-46 Score=369.74 Aligned_cols=220 Identities=29% Similarity=0.481 Sum_probs=183.9
Q ss_pred EEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh----
Q 008534 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (562)
Q Consensus 150 l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~---- 225 (562)
|+++||+++|. .++.+|+|+||+|++|++++|+||||||||||+++|+|.+. +.+|+|.++|.++..
T Consensus 1 l~~~~l~~~~~-------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~ 71 (241)
T cd03256 1 IEVENLSKTYP-------NGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVE--PTSGSVLIDGTDINKLKGK 71 (241)
T ss_pred CEEeeEEEecC-------CccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCCceEEECCEeccccCHh
Confidence 46899999872 12579999999999999999999999999999999999543 568999999998742
Q ss_pred ---hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCC-----CCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCC
Q 008534 226 ---SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRL-----PNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVS 297 (562)
Q Consensus 226 ---~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~-----~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LS 297 (562)
.+++.++||+|++.+|+.+||+||+.++..... ..........+++.++++.++|.+..++ .+.+||
T Consensus 72 ~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS 146 (241)
T cd03256 72 ALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQ-----RADQLS 146 (241)
T ss_pred HHHHHHhccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCC-----CcccCC
Confidence 245679999999999998999999987642110 0011112334567889999999765554 356899
Q ss_pred hhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEE
Q 008534 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (562)
Q Consensus 298 GGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~ 376 (562)
|||||||+|||||+.+|+||||||||+|||+.++..+.+.|++++++ |+|||++||++.. +..+||++++|++|++++
T Consensus 147 ~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~-~~~~~d~v~~l~~G~i~~ 225 (241)
T cd03256 147 GGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDL-AREYADRIVGLKDGRIVF 225 (241)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhCCEEEEEECCEEEe
Confidence 99999999999999999999999999999999999999999999764 8999999999764 677999999999999999
Q ss_pred ecChHHHH
Q 008534 377 FGKASEAM 384 (562)
Q Consensus 377 ~G~~~el~ 384 (562)
.|+++++.
T Consensus 226 ~~~~~~~~ 233 (241)
T cd03256 226 DGPPAELT 233 (241)
T ss_pred ecCHHHhh
Confidence 99988753
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-45 Score=370.05 Aligned_cols=218 Identities=30% Similarity=0.510 Sum_probs=187.0
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
+|+++||+++| +++.+|+||||+|++|++++|+||||||||||+++|+|.+. +.+|+|.++|.++..
T Consensus 3 ~l~~~~l~~~~--------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~ 72 (250)
T PRK11264 3 AIEVKNLVKKF--------HGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQ--PEAGTIRVGDITIDTARS 72 (250)
T ss_pred cEEEeceEEEE--------CCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEcccccc
Confidence 58999999998 23569999999999999999999999999999999999643 568999999988641
Q ss_pred ---------hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCC
Q 008534 226 ---------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGV 296 (562)
Q Consensus 226 ---------~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~L 296 (562)
.+++.++||+|++.+++.+||+||+.++..... ........+++.++++.+||.+..++ .+.+|
T Consensus 73 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~-----~~~~L 145 (250)
T PRK11264 73 LSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVK--GEPKEEATARARELLAKVGLAGKETS-----YPRRL 145 (250)
T ss_pred ccchhhHHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhC-----ChhhC
Confidence 235679999999999988999999988643111 12334445668889999999866554 35789
Q ss_pred ChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEE
Q 008534 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (562)
Q Consensus 297 SGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~ 376 (562)
||||||||+|||||+.+|+||||||||+|||+.++..+.+.|++++++|.|||++||++. .+.++||+|++|++|++++
T Consensus 146 S~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~-~~~~~~d~i~~l~~G~i~~ 224 (250)
T PRK11264 146 SGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMS-FARDVADRAIFMDQGRIVE 224 (250)
T ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999999999877999999999975 4678899999999999999
Q ss_pred ecChHHHH
Q 008534 377 FGKASEAM 384 (562)
Q Consensus 377 ~G~~~el~ 384 (562)
.|+++++.
T Consensus 225 ~~~~~~~~ 232 (250)
T PRK11264 225 QGPAKALF 232 (250)
T ss_pred eCCHHHHh
Confidence 99988764
|
|
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-46 Score=383.20 Aligned_cols=207 Identities=29% Similarity=0.456 Sum_probs=182.5
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---hccCcEEEEccCCCCCCCCC
Q 008534 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---SLKSKIGFVTQDDVLFPHLT 245 (562)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~---~~~~~igyV~Q~~~l~~~lT 245 (562)
++.+|+||||+|++||+++|+||||||||||+++|+|.+. +++|+|.++|.++.. .+++.+|||+|++.+++.+|
T Consensus 5 ~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 82 (302)
T TIGR01188 5 DFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLR--PTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLT 82 (302)
T ss_pred CeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCc
Confidence 4579999999999999999999999999999999999653 568999999998743 34678999999999999999
Q ss_pred HHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 008534 246 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSG 325 (562)
Q Consensus 246 V~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsg 325 (562)
|+||+.+.+..+ ........+++.++++.++|.+..++. ++.|||||||||+|||||+.+|++|||||||+|
T Consensus 83 v~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrv~la~al~~~p~lllLDEPt~g 154 (302)
T TIGR01188 83 GRENLEMMGRLY---GLPKDEAEERAEELLELFELGEAADRP-----VGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTG 154 (302)
T ss_pred HHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhCCc-----hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcC
Confidence 999999876543 223444556788999999998777665 468999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHHHH
Q 008534 326 LDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAY 386 (562)
Q Consensus 326 LD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~~~ 386 (562)
||+.++..+++.|++++++|+|||++||++. ++.++||+|++|++|++++.|+++++...
T Consensus 155 LD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~-~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 214 (302)
T TIGR01188 155 LDPRTRRAIWDYIRALKEEGVTILLTTHYME-EADKLCDRIAIIDHGRIIAEGTPEELKRR 214 (302)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEECCHHHHHHh
Confidence 9999999999999999877999999999975 57789999999999999999999988654
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-45 Score=378.15 Aligned_cols=232 Identities=27% Similarity=0.451 Sum_probs=190.4
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
.|+++||+++|... ....+++|+||||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|+++..
T Consensus 2 ~l~~~~l~~~y~~~---~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~ 76 (290)
T PRK13634 2 DITFQKVEHRYQYK---TPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQ--PTSGTVTIGERVITAGKK 76 (290)
T ss_pred EEEEEEEEEEECCC---CcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECCEECccccc
Confidence 38899999998310 0012569999999999999999999999999999999999653 568999999998731
Q ss_pred -----hccCcEEEEccCC--CCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCC-ccccccccCcccCCCC
Q 008534 226 -----SLKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVS 297 (562)
Q Consensus 226 -----~~~~~igyV~Q~~--~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~~LS 297 (562)
..++.||||+|++ .+|+ .||+||+.|+.... ..+..+..+++.++++.+||. +..++ .++.||
T Consensus 77 ~~~~~~~~~~ig~v~q~~~~~l~~-~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~~LS 147 (290)
T PRK13634 77 NKKLKPLRKKVGIVFQFPEHQLFE-ETVEKDICFGPMNF---GVSEEDAKQKAREMIELVGLPEELLAR-----SPFELS 147 (290)
T ss_pred cchHHHHHhhEEEEeeCchhhhhh-hhHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCChhhhhC-----CcccCC
Confidence 3456799999996 4664 69999999875432 234445556788999999996 44454 357899
Q ss_pred hhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEE
Q 008534 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (562)
Q Consensus 298 GGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~ 376 (562)
|||||||+|||||+.+|+||||||||+|||+.++..+++.|++++++ |.|||++||++. .+..+||||++|++|++++
T Consensus 148 gGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~-~~~~~~drv~~l~~G~i~~ 226 (290)
T PRK13634 148 GGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSME-DAARYADQIVVMHKGTVFL 226 (290)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999764 899999999976 4778899999999999999
Q ss_pred ecChHHHHH---HHHhcCCCCC
Q 008534 377 FGKASEAMA---YFSSIGCSPQ 395 (562)
Q Consensus 377 ~G~~~el~~---~f~~~g~~~~ 395 (562)
.|+++++.. .+...+..+|
T Consensus 227 ~g~~~~~~~~~~~~~~~~~~~~ 248 (290)
T PRK13634 227 QGTPREIFADPDELEAIGLDLP 248 (290)
T ss_pred ECCHHHHhcCHHHHHHCCCCCC
Confidence 999988742 2334444433
|
|
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-45 Score=368.82 Aligned_cols=216 Identities=30% Similarity=0.541 Sum_probs=185.7
Q ss_pred EEEEeEEEEEeecccCCccc-cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 150 LKFTDVTYKVILKGMTSSEE-KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 150 l~~~nvs~~y~~~~~~~~~~-~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
++++||+++|. + +.+|+|+||+|++|++++|+||||||||||+++|+|.+. +.+|+|.++|.++..
T Consensus 1 l~~~~l~~~~~--------~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~ 70 (242)
T cd03295 1 IEFENVTKRYG--------GGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIE--PTSGEIFIDGEDIREQDP 70 (242)
T ss_pred CEEEEEEEEeC--------CcceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCeEcCcCCh
Confidence 46899999982 2 569999999999999999999999999999999999643 568999999998742
Q ss_pred -hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCc--cccccccCcccCCCChhHHH
Q 008534 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER--CQDTMIGGSFVRGVSGGERK 302 (562)
Q Consensus 226 -~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~--~~~t~vg~~~~~~LSGGqrq 302 (562)
.+++.++|++|++.+|+.+||+||+.++.... ........+++.++++.++|.+ ..++ .+.+|||||||
T Consensus 71 ~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~l~l~~~~~~~~-----~~~~LS~G~~q 142 (242)
T cd03295 71 VELRRKIGYVIQQIGLFPHMTVEENIALVPKLL---KWPKEKIRERADELLALVGLDPAEFADR-----YPHELSGGQQQ 142 (242)
T ss_pred HHhhcceEEEccCccccCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCCcHHHHhc-----ChhhCCHHHHH
Confidence 34567999999999999899999999865432 1233444567889999999975 4444 45789999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChH
Q 008534 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKAS 381 (562)
Q Consensus 303 Rv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~ 381 (562)
||+|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. .+...||+|++|++|++++.|+++
T Consensus 143 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~ 221 (242)
T cd03295 143 RVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDID-EAFRLADRIAIMKNGEIVQVGTPD 221 (242)
T ss_pred HHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEecCHH
Confidence 999999999999999999999999999999999999999764 899999999975 467889999999999999999988
Q ss_pred HHH
Q 008534 382 EAM 384 (562)
Q Consensus 382 el~ 384 (562)
++.
T Consensus 222 ~~~ 224 (242)
T cd03295 222 EIL 224 (242)
T ss_pred HHH
Confidence 764
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-45 Score=367.45 Aligned_cols=218 Identities=29% Similarity=0.501 Sum_probs=187.2
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
+|+++|++++| +++.+|+|+||++++||+++|+||||||||||+++|+|.+ ++.+|+|.++|.++..
T Consensus 1 ~l~~~~l~~~~--------~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~--~~~~G~i~~~g~~~~~~~~ 70 (240)
T PRK09493 1 MIEFKNVSKHF--------GPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLE--EITSGDLIVDGLKVNDPKV 70 (240)
T ss_pred CEEEEeEEEEE--------CCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC--CCCceEEEECCEECCcCCh
Confidence 37899999998 2457999999999999999999999999999999999954 3568999999998752
Q ss_pred ---hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHH
Q 008534 226 ---SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (562)
Q Consensus 226 ---~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrq 302 (562)
.+++.++|++|++.+++.+||+||+.++..... ........+++.++++.+||++..+.. +..|||||||
T Consensus 71 ~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~G~~q 143 (240)
T PRK09493 71 DERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVR--GASKEEAEKQARELLAKVGLAERAHHY-----PSELSGGQQQ 143 (240)
T ss_pred hHHHHhhceEEEecccccCCCCcHHHHHHhHHHHhc--CCCHHHHHHHHHHHHHHcCChHHHhcC-----hhhcCHHHHH
Confidence 345679999999999988999999988642111 123344556788999999997666654 4689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHH
Q 008534 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (562)
Q Consensus 303 Rv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~e 382 (562)
||+|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+..+||++++|++|++++.|++++
T Consensus 144 rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~ 222 (240)
T PRK09493 144 RVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIG-FAEKVASRLIFIDKGRIAEDGDPQV 222 (240)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEeeCCHHH
Confidence 999999999999999999999999999999999999999877999999999976 4667899999999999999999887
Q ss_pred HH
Q 008534 383 AM 384 (562)
Q Consensus 383 l~ 384 (562)
+.
T Consensus 223 ~~ 224 (240)
T PRK09493 223 LI 224 (240)
T ss_pred Hh
Confidence 64
|
|
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-45 Score=364.52 Aligned_cols=214 Identities=28% Similarity=0.500 Sum_probs=181.5
Q ss_pred EEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh----
Q 008534 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (562)
Q Consensus 150 l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~---- 225 (562)
|+++||+++| +++++|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++..
T Consensus 1 l~~~~l~~~~--------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~ 70 (222)
T cd03224 1 LEVENLNAGY--------GKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLP--PRSGSIRFDGRDITGLPPH 70 (222)
T ss_pred CEEeeEEeec--------CCeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcCCCCHH
Confidence 4789999987 23579999999999999999999999999999999999643 568999999998742
Q ss_pred h-ccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHc-CCCccccccccCcccCCCChhHHHH
Q 008534 226 S-LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINEL-GLERCQDTMIGGSFVRGVSGGERKR 303 (562)
Q Consensus 226 ~-~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~l-gL~~~~~t~vg~~~~~~LSGGqrqR 303 (562)
. .++.++|++|++.+|+.+|++||+.++..... ......++.++++.+ ++.+..++. ++.||||||||
T Consensus 71 ~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~-----~~~~~~~~~~~l~~~~~l~~~~~~~-----~~~LS~G~~qr 140 (222)
T cd03224 71 ERARAGIGYVPEGRRIFPELTVEENLLLGAYARR-----RAKRKARLERVYELFPRLKERRKQL-----AGTLSGGEQQM 140 (222)
T ss_pred HHHhcCeEEeccccccCCCCcHHHHHHHHhhhcC-----chhHHHHHHHHHHHHHhhhhhhhCc-----hhhCCHHHHHH
Confidence 1 25679999999999999999999998754321 122334566777777 466555543 56899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHH
Q 008534 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (562)
Q Consensus 304 v~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el 383 (562)
++|||||+.+|++|||||||+|||+.++..+++.|+++++.|+|||++||++. .+..+||+|++|++|++++.|+++++
T Consensus 141 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (222)
T cd03224 141 LAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNAR-FALEIADRAYVLERGRVVLEGTAAEL 219 (222)
T ss_pred HHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhccEEEEeeCCeEEEeCCHHHH
Confidence 99999999999999999999999999999999999999877899999999975 46788999999999999999998775
Q ss_pred H
Q 008534 384 M 384 (562)
Q Consensus 384 ~ 384 (562)
.
T Consensus 220 ~ 220 (222)
T cd03224 220 L 220 (222)
T ss_pred h
Confidence 3
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-46 Score=370.17 Aligned_cols=220 Identities=29% Similarity=0.445 Sum_probs=184.1
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
+|+++||+++|. .++++|+|+||+|++|++++|+||||||||||+++|+|.+. +.+|+|.++|.++..
T Consensus 1 ~l~~~~l~~~~~-------~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~ 71 (243)
T TIGR02315 1 MLEVENLSKVYP-------NGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVE--PSSGSILLEGTDITKLRG 71 (243)
T ss_pred CeEEEeeeeecC-------CCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCccEEEECCEEhhhCCH
Confidence 378999999871 14569999999999999999999999999999999999543 568999999998642
Q ss_pred ----hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCC--C---CCccHHHHHHHHHHHHHHcCCCccccccccCcccCCC
Q 008534 226 ----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRL--P---NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGV 296 (562)
Q Consensus 226 ----~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~--~---~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~L 296 (562)
.+++.++||+|++.+|+.+||+||+.++..... . .........+++.++++.++|.+..+.. +..|
T Consensus 72 ~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~L 146 (243)
T TIGR02315 72 KKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQR-----ADQL 146 (243)
T ss_pred HHHHHHHhheEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCC-----cccC
Confidence 246779999999999998999999987532100 0 0011223455788899999997665543 5689
Q ss_pred ChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEE
Q 008534 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLL 375 (562)
Q Consensus 297 SGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv 375 (562)
||||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++.. +.++||++++|++|+++
T Consensus 147 SgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~-~~~~~d~v~~l~~G~i~ 225 (243)
T TIGR02315 147 SGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDL-AKKYADRIVGLKAGEIV 225 (243)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH-HHHhcCeEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999754 8999999999764 66889999999999999
Q ss_pred EecChHHH
Q 008534 376 YFGKASEA 383 (562)
Q Consensus 376 ~~G~~~el 383 (562)
+.|+++++
T Consensus 226 ~~~~~~~~ 233 (243)
T TIGR02315 226 FDGAPSEL 233 (243)
T ss_pred ecCCHHHh
Confidence 99998775
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-47 Score=427.52 Aligned_cols=355 Identities=22% Similarity=0.294 Sum_probs=243.6
Q ss_pred HHHHHHHHHHHHHHHhhcCCCccccccccCCCCcchhhhhhhhhhhcCCCcccccccceeeeeecccccccccccccchh
Q 008534 10 LARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSGA 89 (562)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 89 (562)
..+..+++..+.++...+.+...+++|.|+.+..+.+++.+................+.....+.....-..+..+..|+
T Consensus 183 ~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 262 (588)
T PRK13657 183 GQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVLSWWALASVLNRAASTITMLAILVLGA 262 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445667788888899999999999999998887777776554443321110000111101111112222233345677
Q ss_pred hhhhhhhhhhhhhcccccCCCCccc----cccCCC------CCCCCCccccccccC--CCCCCCCCCCCceeEEEEeEEE
Q 008534 90 ALSRASSASLGLSFSFTGFTMPPDE----IADSKP------FSDDDIPEDIEAGTR--ERPKFQTEPTLPIYLKFTDVTY 157 (562)
Q Consensus 90 ~~~~~~~~~~g~~~~~~~~~~~~~~----~~~~~~------~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~nvs~ 157 (562)
.++..+..+.|.++.+..+...... +..... ....++....+..+. ..+.....+.....++++||+|
T Consensus 263 ~~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf 342 (588)
T PRK13657 263 ALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPDVRDPPGAIDLGRVKGAVEFDDVSF 342 (588)
T ss_pred HHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCCCcCCCCCeEEEEEEEE
Confidence 7777777777777766554322111 110000 000000000000000 0000000111123699999999
Q ss_pred EEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh----hccCcEEE
Q 008534 158 KVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGF 233 (562)
Q Consensus 158 ~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~----~~~~~igy 233 (562)
+|+ ..+++|+|+|++++||++++|+|+||||||||+++|+|. ++ +.+|+|.+||.++.+ .+++.|+|
T Consensus 343 ~y~-------~~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl-~~-p~~G~I~i~g~~i~~~~~~~~r~~i~~ 413 (588)
T PRK13657 343 SYD-------NSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRV-FD-PQSGRILIDGTDIRTVTRASLRRNIAV 413 (588)
T ss_pred EeC-------CCCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcC-cC-CCCCEEEECCEEhhhCCHHHHHhheEE
Confidence 983 134699999999999999999999999999999999985 44 458999999998863 56889999
Q ss_pred EccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHH-----HHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHH
Q 008534 234 VTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEK-----RAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGN 308 (562)
Q Consensus 234 V~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~-----~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAr 308 (562)
|+|++.+|+ .|++|||.++. + ..++++... .+++.++. +++..||.+|+. ...||||||||++|||
T Consensus 414 v~Q~~~lf~-~Ti~~Ni~~~~----~-~~~d~~i~~al~~~~l~~~i~~--lp~gldt~i~~~-g~~LSgGq~QRialAR 484 (588)
T PRK13657 414 VFQDAGLFN-RSIEDNIRVGR----P-DATDEEMRAAAERAQAHDFIER--KPDGYDTVVGER-GRQLSGGERQRLAIAR 484 (588)
T ss_pred EecCccccc-ccHHHHHhcCC----C-CCCHHHHHHHHHHhCHHHHHHh--CcccccchhcCC-CCCCCHHHHHHHHHHH
Confidence 999999997 49999999863 1 122222221 12223332 466788888764 4679999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHHH
Q 008534 309 EIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (562)
Q Consensus 309 aLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~~ 385 (562)
||+++|+|||||||||+||+.++..+.+.|+++. +++|+|++||+++ ..+.||+|++|++|++++.|+++++++
T Consensus 485 all~~~~iliLDEpts~LD~~t~~~i~~~l~~~~-~~~tvIiitHr~~--~~~~~D~ii~l~~G~i~~~g~~~~l~~ 558 (588)
T PRK13657 485 ALLKDPPILILDEATSALDVETEAKVKAALDELM-KGRTTFIIAHRLS--TVRNADRILVFDNGRVVESGSFDELVA 558 (588)
T ss_pred HHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-cCCEEEEEEecHH--HHHhCCEEEEEECCEEEEeCCHHHHHH
Confidence 9999999999999999999999999999999875 4799999999975 467899999999999999999999864
|
|
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-45 Score=373.04 Aligned_cols=217 Identities=26% Similarity=0.414 Sum_probs=185.1
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
.|+++||++.|. ..+++|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++..
T Consensus 4 ~l~~~~l~~~~~-------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~ 74 (274)
T PRK13647 4 IIEVEDLHFRYK-------DGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYL--PQRGRVKVMGREVNAENE 74 (274)
T ss_pred eEEEEEEEEEeC-------CCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCceEEEECCEECCCCCH
Confidence 689999999982 13469999999999999999999999999999999999543 568999999998742
Q ss_pred -hccCcEEEEccCCC-CCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHH
Q 008534 226 -SLKSKIGFVTQDDV-LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (562)
Q Consensus 226 -~~~~~igyV~Q~~~-l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqR 303 (562)
.+++.||||+|++. .++.+||.||+.|+.... .......++++.++++.+||.+..++. +..||||||||
T Consensus 75 ~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~-----~~~LSgG~~qr 146 (274)
T PRK13647 75 KWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNM---GLDKDEVERRVEEALKAVRMWDFRDKP-----PYHLSYGQKKR 146 (274)
T ss_pred HHHHhhEEEEecChhhhhccCcHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCC-----hhhCCHHHHHH
Confidence 34567999999973 334579999999875322 233444556788999999998766654 56899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHH
Q 008534 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (562)
Q Consensus 304 v~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el 383 (562)
|+|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+.++||+|++|++|++++.|+++++
T Consensus 147 v~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 225 (274)
T PRK13647 147 VAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVD-LAAEWADQVIVLKEGRVLAEGDKSLL 225 (274)
T ss_pred HHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHh
Confidence 99999999999999999999999999999999999999877999999999976 46688999999999999999998654
|
|
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-45 Score=372.84 Aligned_cols=218 Identities=24% Similarity=0.446 Sum_probs=187.4
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
.|+++||++.| +++.+|+||||+|++|++++|+||||||||||+++|+|... +.+|+|.++|.++..
T Consensus 7 ~l~~~~l~~~~--------~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~ 76 (269)
T PRK11831 7 LVDMRGVSFTR--------GNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIA--PDHGEILFDGENIPAMSR 76 (269)
T ss_pred eEEEeCeEEEE--------CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEccccCh
Confidence 69999999998 24579999999999999999999999999999999999643 568999999998742
Q ss_pred ----hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHH
Q 008534 226 ----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGER 301 (562)
Q Consensus 226 ----~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqr 301 (562)
..++.++||+|++.+|+.+||.||+.++..... ........+++.++++.++|.+..++. +..||||||
T Consensus 77 ~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgGq~ 149 (269)
T PRK11831 77 SRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHT--QLPAPLLHSTVMMKLEAVGLRGAAKLM-----PSELSGGMA 149 (269)
T ss_pred hhHHHHhhcEEEEecccccCCCCCHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHcCChhhhhCC-----hhhCCHHHH
Confidence 135679999999999998999999998643211 123334455678889999998766654 468999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecCh
Q 008534 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 380 (562)
Q Consensus 302 qRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~ 380 (562)
|||+|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. .+.++||+|++|++|++++.|++
T Consensus 150 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~v~~l~~G~i~~~g~~ 228 (269)
T PRK11831 150 RRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVP-EVLSIADHAYIVADKKIVAHGSA 228 (269)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhhCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999999765 899999999975 46788999999999999999998
Q ss_pred HHHH
Q 008534 381 SEAM 384 (562)
Q Consensus 381 ~el~ 384 (562)
+++.
T Consensus 229 ~~~~ 232 (269)
T PRK11831 229 QALQ 232 (269)
T ss_pred HHHh
Confidence 8764
|
|
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-45 Score=379.51 Aligned_cols=233 Identities=27% Similarity=0.419 Sum_probs=191.0
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh--
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~-- 225 (562)
..|+++||+|.|... ....+++|+||||+|++||+++|+||||||||||+++|+|.+. +.+|+|+++|.++..
T Consensus 20 ~~l~~~nl~~~y~~~---~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~--p~~G~I~i~g~~~~~~~ 94 (320)
T PRK13631 20 IILRVKNLYCVFDEK---QENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIK--SKYGTIQVGDIYIGDKK 94 (320)
T ss_pred ceEEEEeEEEEeCCC---CcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEEECCEEccccc
Confidence 369999999998311 0113469999999999999999999999999999999999643 568999999987632
Q ss_pred ------------------hccCcEEEEccCC--CCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCC-ccc
Q 008534 226 ------------------SLKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQ 284 (562)
Q Consensus 226 ------------------~~~~~igyV~Q~~--~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~ 284 (562)
.+++.|+||+|++ .+|+ .||+||+.|+.... ..+.++..+++.++++.+||+ +..
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~-~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~ 170 (320)
T PRK13631 95 NNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFK-DTIEKDIMFGPVAL---GVKKSEAKKLAKFYLNKMGLDDSYL 170 (320)
T ss_pred ccccccccccccccchHHHHHhcEEEEEECchhcccc-chHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCChhHh
Confidence 3467899999997 5776 59999999875322 234445556788999999996 344
Q ss_pred cccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCC
Q 008534 285 DTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFD 364 (562)
Q Consensus 285 ~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D 364 (562)
++ .+.+|||||||||+|||||+.+|+||||||||+|||+.++..+++.|+++.++|+|||++||+++ .+...||
T Consensus 171 ~~-----~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~-~~~~~ad 244 (320)
T PRK13631 171 ER-----SPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTME-HVLEVAD 244 (320)
T ss_pred cC-----CcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCC
Confidence 43 45789999999999999999999999999999999999999999999999877999999999975 3668899
Q ss_pred EEEEEcCCeEEEecChHHHHH---HHHhcCCCCC
Q 008534 365 KLILLGKGSLLYFGKASEAMA---YFSSIGCSPQ 395 (562)
Q Consensus 365 ~i~vL~~G~iv~~G~~~el~~---~f~~~g~~~~ 395 (562)
+|++|++|++++.|+++++.. .+...+..+|
T Consensus 245 ri~vl~~G~i~~~g~~~~~~~~~~~~~~~~~~~p 278 (320)
T PRK13631 245 EVIVMDKGKILKTGTPYEIFTDQHIINSTSIQVP 278 (320)
T ss_pred EEEEEECCEEEEeCCHHHHhcCHHHHHHcCCCCC
Confidence 999999999999999988742 2334455443
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-45 Score=374.45 Aligned_cols=219 Identities=24% Similarity=0.447 Sum_probs=187.8
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
.|+++||++.|.. ...+.+|+||||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++..
T Consensus 4 ~l~~~~l~~~~~~-----~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~ 76 (279)
T PRK13650 4 IIEVKNLTFKYKE-----DQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLE--AESGQIIIDGDLLTEENV 76 (279)
T ss_pred eEEEEeEEEEcCC-----CCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEECCcCcH
Confidence 5899999999821 113469999999999999999999999999999999999653 568999999998752
Q ss_pred -hccCcEEEEccCCC-CCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHH
Q 008534 226 -SLKSKIGFVTQDDV-LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (562)
Q Consensus 226 -~~~~~igyV~Q~~~-l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqR 303 (562)
.+++.++||+|++. +++.+||+|||.|+.... ....++..+++.++++.+||.+..+.. +..||||||||
T Consensus 77 ~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~LSgGq~qr 148 (279)
T PRK13650 77 WDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENK---GIPHEEMKERVNEALELVGMQDFKERE-----PARLSGGQKQR 148 (279)
T ss_pred HHHHhhceEEEcChHHhcccccHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCCHhHhhCC-----cccCCHHHHHH
Confidence 35678999999973 666789999999875432 234555566788999999998766654 46899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHH
Q 008534 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (562)
Q Consensus 304 v~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~e 382 (562)
++|||||+.+|+||||||||+|||+.++..+++.|++++++ |+|||++||++.. + ..||+|++|++|++++.|++++
T Consensus 149 v~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~-~-~~~dri~~l~~G~i~~~g~~~~ 226 (279)
T PRK13650 149 VAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDE-V-ALSDRVLVMKNGQVESTSTPRE 226 (279)
T ss_pred HHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-H-HhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999999999865 9999999999764 4 5799999999999999999988
Q ss_pred HH
Q 008534 383 AM 384 (562)
Q Consensus 383 l~ 384 (562)
+.
T Consensus 227 ~~ 228 (279)
T PRK13650 227 LF 228 (279)
T ss_pred HH
Confidence 65
|
|
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-45 Score=392.34 Aligned_cols=220 Identities=25% Similarity=0.451 Sum_probs=190.0
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
.|+++||++.| +++.+|+|+||+|++||+++|+||||||||||||+|+|.+. +.+|+|.++|+++..
T Consensus 3 ~L~~~nls~~y--------~~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~--p~sG~I~l~G~~i~~~~~ 72 (402)
T PRK09536 3 MIDVSDLSVEF--------GDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLT--PTAGTVLVAGDDVEALSA 72 (402)
T ss_pred eEEEeeEEEEE--------CCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC--CCCcEEEECCEEcCcCCH
Confidence 58999999998 25679999999999999999999999999999999999653 568999999998752
Q ss_pred -hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCC-CccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHH
Q 008534 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPN-TLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (562)
Q Consensus 226 -~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqR 303 (562)
.++++||||+|++.+++.+||+||+.++....... ........+++.++++.+++.+..++. +++||||||||
T Consensus 73 ~~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~-----~~~LSgGerQR 147 (402)
T PRK09536 73 RAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRP-----VTSLSGGERQR 147 (402)
T ss_pred HHHhcceEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCC-----hhhCCHHHHHH
Confidence 45678999999999988899999999864321100 001233456788999999998777664 46899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHH
Q 008534 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (562)
Q Consensus 304 v~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el 383 (562)
|+|||||+++|+||||||||+|||+.++.++++.|++++++|+|||+++|++. .+.++||++++|++|++++.|+++++
T Consensus 148 v~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~-~~~~~adrii~l~~G~iv~~G~~~ev 226 (402)
T PRK09536 148 VLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLD-LAARYCDELVLLADGRVRAAGPPADV 226 (402)
T ss_pred HHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEecCHHHH
Confidence 99999999999999999999999999999999999999877899999999976 47789999999999999999999985
Q ss_pred H
Q 008534 384 M 384 (562)
Q Consensus 384 ~ 384 (562)
+
T Consensus 227 ~ 227 (402)
T PRK09536 227 L 227 (402)
T ss_pred h
Confidence 3
|
|
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-45 Score=362.23 Aligned_cols=209 Identities=32% Similarity=0.541 Sum_probs=175.9
Q ss_pred EEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh----
Q 008534 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (562)
Q Consensus 150 l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~---- 225 (562)
|+++||+++|.. ....+++|+|+||+|++|++++|+||||||||||+++|+|.+. +.+|+|.++|.++..
T Consensus 1 l~~~~l~~~~~~----~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~~~~~~~ 74 (218)
T cd03255 1 IELKNLSKTYGG----GGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDR--PTSGEVRVDGTDISKLSEK 74 (218)
T ss_pred CeEeeeEEEecC----CCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcC--CCceeEEECCEehhhcchh
Confidence 468999999821 0011579999999999999999999999999999999999643 568999999998742
Q ss_pred ---h-ccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHH
Q 008534 226 ---S-LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGER 301 (562)
Q Consensus 226 ---~-~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqr 301 (562)
. .++.++||+|++.+|+.+||+||+.++...+ ........+++.++++.+||.+..++. ++.||||||
T Consensus 75 ~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~ 146 (218)
T cd03255 75 ELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLA---GVPKKERRERAEELLERVGLGDRLNHY-----PSELSGGQQ 146 (218)
T ss_pred HHHHHHhhcEEEEeeccccCCCCcHHHHHHHHHhhc---CCCHHHHHHHHHHHHHHcCCchhhhcC-----hhhcCHHHH
Confidence 1 2467999999999999899999999876432 122333456788899999998766554 468999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCcEEEEEecCCChHHHhcCCEEEEEcCCeE
Q 008534 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374 (562)
Q Consensus 302 qRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~i 374 (562)
|||+|||||+.+|+||||||||+|||+.++..+.+.|+++++ .|+|||++||++.. +. .||++++|++|++
T Consensus 147 qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~-~~-~~d~v~~l~~G~i 218 (218)
T cd03255 147 QRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPEL-AE-YADRIIELRDGKI 218 (218)
T ss_pred HHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHH-Hh-hhcEEEEeeCCcC
Confidence 999999999999999999999999999999999999999977 58999999999764 54 8999999999974
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-45 Score=359.15 Aligned_cols=206 Identities=32% Similarity=0.540 Sum_probs=178.5
Q ss_pred EEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh--hc
Q 008534 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SL 227 (562)
Q Consensus 150 l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--~~ 227 (562)
|+++||+++| .++++|+|+||++++|++++|+||||||||||+++|+|.+. +.+|+|.++|.++.. ..
T Consensus 1 l~~~~l~~~~--------~~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~ 70 (208)
T cd03268 1 LKTNDLTKTY--------GKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIK--PDSGEITFDGKSYQKNIEA 70 (208)
T ss_pred CEEEEEEEEE--------CCeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCCcccchHHH
Confidence 4689999998 24579999999999999999999999999999999999653 568999999988742 34
Q ss_pred cCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHH
Q 008534 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (562)
Q Consensus 228 ~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA 307 (562)
++.++||+|++.+++.+||+||+.++.... .. ..+++.++++.++|.+..++. +..|||||||||+||
T Consensus 71 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~----~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~la 138 (208)
T cd03268 71 LRRIGALIEAPGFYPNLTARENLRLLARLL---GI----RKKRIDEVLDVVGLKDSAKKK-----VKGFSLGMKQRLGIA 138 (208)
T ss_pred HhhEEEecCCCccCccCcHHHHHHHHHHhc---CC----cHHHHHHHHHHcCCHHHHhhh-----HhhCCHHHHHHHHHH
Confidence 567999999999998999999999875432 11 134577889999998766654 468999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEec
Q 008534 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (562)
Q Consensus 308 raLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G 378 (562)
|||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+...||++++|++|++++.|
T Consensus 139 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 139 LALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLS-EIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred HHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999999999999999877899999999976 466789999999999998765
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-45 Score=376.84 Aligned_cols=221 Identities=25% Similarity=0.461 Sum_probs=186.1
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCC----
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---- 224 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~---- 224 (562)
.|+++||++.|..+. .....+|+||||+|++||+++|+||||||||||+++|+|.+. +.+|+|+++|.+..
T Consensus 2 ~i~~~~l~~~y~~~~---~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~--p~~G~i~~~g~~~~~~~~ 76 (305)
T PRK13651 2 QIKVKNIVKIFNKKL---PTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLL--PDTGTIEWIFKDEKNKKK 76 (305)
T ss_pred EEEEEEEEEEECCCC---CccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCcEEEEeceecccccc
Confidence 489999999983110 112469999999999999999999999999999999999653 45899999987541
Q ss_pred ------------------------hhccCcEEEEccCC--CCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHc
Q 008534 225 ------------------------KSLKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINEL 278 (562)
Q Consensus 225 ------------------------~~~~~~igyV~Q~~--~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~l 278 (562)
..+++.||||+|++ .+| ..||+|||.|+.... ...+++..+++.++++.+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~-~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~ 152 (305)
T PRK13651 77 TKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLF-EQTIEKDIIFGPVSM---GVSKEEAKKRAAKYIELV 152 (305)
T ss_pred cccccccccccccccccccccchHHHHHhceEEEeeCcccccc-cccHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHc
Confidence 13467799999986 455 479999999876432 234556667889999999
Q ss_pred CCC-ccccccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCCh
Q 008534 279 GLE-RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSS 357 (562)
Q Consensus 279 gL~-~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~ 357 (562)
||. +..++ .+..|||||||||+|||||+.+|+||||||||+|||+.++..+++.|+++++.|+|||++||++.
T Consensus 153 gL~~~~~~~-----~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~- 226 (305)
T PRK13651 153 GLDESYLQR-----SPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLD- 226 (305)
T ss_pred CCChhhhhC-----ChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHH-
Confidence 996 45554 45789999999999999999999999999999999999999999999999877999999999975
Q ss_pred HHHhcCCEEEEEcCCeEEEecChHHHH
Q 008534 358 RLFHKFDKLILLGKGSLLYFGKASEAM 384 (562)
Q Consensus 358 ~i~~~~D~i~vL~~G~iv~~G~~~el~ 384 (562)
.+.++||+|++|++|++++.|+++++.
T Consensus 227 ~~~~~adrv~vl~~G~i~~~g~~~~~~ 253 (305)
T PRK13651 227 NVLEWTKRTIFFKDGKIIKDGDTYDIL 253 (305)
T ss_pred HHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 467899999999999999999998875
|
|
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-45 Score=386.48 Aligned_cols=206 Identities=26% Similarity=0.463 Sum_probs=182.4
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh----hc----cCcEEEEccCCCC
Q 008534 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SL----KSKIGFVTQDDVL 240 (562)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~----~~----~~~igyV~Q~~~l 240 (562)
.+.+|+|+||+|++||+++|+||||||||||+++|+|... +++|+|.++|.++.. .+ ++.|+||+|++.+
T Consensus 5 ~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~--p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l 82 (363)
T TIGR01186 5 GKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIE--PTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFAL 82 (363)
T ss_pred CceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCC--CCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcC
Confidence 5679999999999999999999999999999999998543 568999999998753 23 5789999999999
Q ss_pred CCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEe
Q 008534 241 FPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLD 320 (562)
Q Consensus 241 ~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLD 320 (562)
||++||+||+.|+.... ...+++..+++.++++.+||.+..++ ++.+|||||||||+|||||+.+|+|||||
T Consensus 83 ~~~~TV~eNi~~~~~~~---~~~~~~~~~~~~~~l~~vgL~~~~~~-----~p~~LSGGq~QRV~lARAL~~~p~iLLlD 154 (363)
T TIGR01186 83 FPHMTILQNTSLGPELL---GWPEQERKEKALELLKLVGLEEYEHR-----YPDELSGGMQQRVGLARALAAEPDILLMD 154 (363)
T ss_pred CCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCchhhhC-----ChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 99999999999986543 23455667788999999999876665 45789999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHHH
Q 008534 321 EPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (562)
Q Consensus 321 EPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~~ 385 (562)
|||++||+.++..+.+.|.++.++ |+|||++||++. ++.++||+|++|++|++++.|++++++.
T Consensus 155 EP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~-ea~~~~drI~vl~~G~iv~~g~~~ei~~ 219 (363)
T TIGR01186 155 EAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLD-EAIRIGDRIVIMKAGEIVQVGTPDEILR 219 (363)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCEEEeeCCHHHHHh
Confidence 999999999999999999999754 899999999976 4678999999999999999999998753
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-45 Score=362.05 Aligned_cols=217 Identities=31% Similarity=0.541 Sum_probs=185.4
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
.|+++|++++| +++.+|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.++..
T Consensus 1 ~l~~~~l~~~~--------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~i~~~~~ 70 (236)
T TIGR03864 1 ALEVAGLSFAY--------GARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYV--AQEGQISVAGHDLRRAPR 70 (236)
T ss_pred CEEEEeeEEEE--------CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCEEcccCCh
Confidence 37899999998 24579999999999999999999999999999999999643 568999999998742
Q ss_pred hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHH
Q 008534 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC 305 (562)
Q Consensus 226 ~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ 305 (562)
..++.++|++|++.+++.+|++||+.+....+ ........+.+.++++.+||.+..++. +..||||||||++
T Consensus 71 ~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~G~~qrl~ 142 (236)
T TIGR03864 71 AALARLGVVFQQPTLDLDLSVRQNLRYHAALH---GLSRAEARERIAALLARLGLAERADDK-----VRELNGGHRRRVE 142 (236)
T ss_pred hhhhhEEEeCCCCCCcccCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhcCC-----hhhCCHHHHHHHH
Confidence 23457999999999888899999998765432 123334455688899999998766654 4689999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHH
Q 008534 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (562)
Q Consensus 306 IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~ 384 (562)
|||||+.+|+||||||||+|||+.++..+.+.|+++++ .|+|||++||++.. +. .||++++|++|++++.|+++++.
T Consensus 143 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~-~~-~~d~i~~l~~G~i~~~~~~~~~~ 220 (236)
T TIGR03864 143 IARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDE-IE-ADDRLVVLHRGRVLADGAAAELR 220 (236)
T ss_pred HHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhh-Hh-hCCEEEEEeCCeEEEeCCHHHHH
Confidence 99999999999999999999999999999999999975 58999999999865 44 59999999999999999988775
Q ss_pred H
Q 008534 385 A 385 (562)
Q Consensus 385 ~ 385 (562)
.
T Consensus 221 ~ 221 (236)
T TIGR03864 221 G 221 (236)
T ss_pred H
Confidence 3
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-45 Score=365.23 Aligned_cols=216 Identities=25% Similarity=0.454 Sum_probs=184.3
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCC-----ccEEEECCEeC
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTV-----GGSITYNDHPY 223 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~-----~G~I~i~G~~~ 223 (562)
+|+++||+++| +++.+|+|+||+|++||+++|+||||||||||+++|+|.+. +. +|+|.++|.++
T Consensus 1 ~l~~~~l~~~~--------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~~~~~~G~i~~~g~~~ 70 (247)
T TIGR00972 1 AIEIENLNLFY--------GEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMND--LVPGVRIEGKVLFDGQDI 70 (247)
T ss_pred CEEEEEEEEEE--------CCeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCC--CCcCCCCceEEEECCEEc
Confidence 37899999998 23469999999999999999999999999999999999653 33 89999999987
Q ss_pred Ch------hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCC----ccccccccCccc
Q 008534 224 SK------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE----RCQDTMIGGSFV 293 (562)
Q Consensus 224 ~~------~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~t~vg~~~~ 293 (562)
.. ..++.|+|++|++.+|+ +||+||+.+....+. .....+..+++.++++.+||. +..++ .+
T Consensus 71 ~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~~ 142 (247)
T TIGR00972 71 YDKKIDVVELRRRVGMVFQKPNPFP-MSIYDNIAYGPRLHG--IKDKKELDEIVEESLKKAALWDEVKDRLHD-----SA 142 (247)
T ss_pred cccccchHHHHhheEEEecCcccCC-CCHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCCcchhhHhhC-----Cc
Confidence 42 24567999999999998 899999998754321 122344456788899999997 44443 45
Q ss_pred CCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCe
Q 008534 294 RGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGS 373 (562)
Q Consensus 294 ~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~ 373 (562)
+.|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++. .+..+||+|++|++|+
T Consensus 143 ~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~~~~~~d~i~~l~~G~ 220 (247)
T TIGR00972 143 LGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKK-KYTIVIVTHNMQ-QAARISDRTAFFYDGE 220 (247)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCeEEEEecCHH-HHHHhCCEEEEEECCE
Confidence 78999999999999999999999999999999999999999999999976 489999999976 4678899999999999
Q ss_pred EEEecChHHHH
Q 008534 374 LLYFGKASEAM 384 (562)
Q Consensus 374 iv~~G~~~el~ 384 (562)
+++.|+++++.
T Consensus 221 i~~~~~~~~~~ 231 (247)
T TIGR00972 221 LVEYGPTEQIF 231 (247)
T ss_pred EEEeCCHHHHH
Confidence 99999988764
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-45 Score=358.62 Aligned_cols=207 Identities=32% Similarity=0.513 Sum_probs=177.7
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
+|+++|++++|. .++.+|+|+||+|++|++++|+||||||||||+++|+|.+. +.+|+|.++|.++..
T Consensus 1 ~l~~~~l~~~~~-------~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~~~~~~ 71 (214)
T TIGR02673 1 MIEFHNVSKAYP-------GGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALT--PSRGQVRIAGEDVNRLRG 71 (214)
T ss_pred CEEEEeeeEEeC-------CCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcccCCH
Confidence 378999999882 13579999999999999999999999999999999999643 568999999998742
Q ss_pred ----hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHH
Q 008534 226 ----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGER 301 (562)
Q Consensus 226 ----~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqr 301 (562)
.+++.++|++|++.+|+.+||+||+.++.... .......++++.++++.++|.+..++. +..||||||
T Consensus 72 ~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~ 143 (214)
T TIGR02673 72 RQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVR---GKKEREIQRRVGAALRQVGLEHKADAF-----PEQLSGGEQ 143 (214)
T ss_pred HHHHHHHhheEEEecChhhccCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCC-----hhhCCHHHH
Confidence 24567999999999998899999999875432 122334456788999999998665554 468999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCe
Q 008534 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGS 373 (562)
Q Consensus 302 qRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~ 373 (562)
|||+|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. ++..+||++++|++|+
T Consensus 144 qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 144 QRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLS-LVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEecCCC
Confidence 9999999999999999999999999999999999999999777999999999975 4677899999999985
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-45 Score=372.07 Aligned_cols=218 Identities=29% Similarity=0.526 Sum_probs=187.0
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCC----
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---- 224 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~---- 224 (562)
.|+++||+++|. .++.+|+||||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++.
T Consensus 5 ~l~~~~l~~~~~-------~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~--p~~G~i~i~g~~~~~~~~ 75 (283)
T PRK13636 5 ILKVEELNYNYS-------DGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILK--PSSGRILFDGKPIDYSRK 75 (283)
T ss_pred eEEEEeEEEEeC-------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCccEEEECCEECCCCcc
Confidence 699999999982 13569999999999999999999999999999999999543 56899999999873
Q ss_pred --hhccCcEEEEccCCC--CCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhH
Q 008534 225 --KSLKSKIGFVTQDDV--LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGE 300 (562)
Q Consensus 225 --~~~~~~igyV~Q~~~--l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGq 300 (562)
..+++.||||+|++. ++ ..||+||+.++.... ..+..+..+++.++++.+||.+..++. ++.|||||
T Consensus 76 ~~~~~~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~LS~G~ 146 (283)
T PRK13636 76 GLMKLRESVGMVFQDPDNQLF-SASVYQDVSFGAVNL---KLPEDEVRKRVDNALKRTGIEHLKDKP-----THCLSFGQ 146 (283)
T ss_pred hHHHHHhhEEEEecCcchhhc-cccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhhhhCC-----cccCCHHH
Confidence 135678999999973 44 479999999865432 234445556788999999998766654 57899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecC
Q 008534 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (562)
Q Consensus 301 rqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (562)
|||++|||||+.+|+||||||||+|||+.++..+.+.|++++++ |+|||++||+++. +..+||++++|++|++++.|+
T Consensus 147 ~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~-~~~~~dri~~l~~G~i~~~g~ 225 (283)
T PRK13636 147 KKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDI-VPLYCDNVFVMKEGRVILQGN 225 (283)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHH-HHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999865 8999999999764 667899999999999999999
Q ss_pred hHHHHH
Q 008534 380 ASEAMA 385 (562)
Q Consensus 380 ~~el~~ 385 (562)
++++..
T Consensus 226 ~~~~~~ 231 (283)
T PRK13636 226 PKEVFA 231 (283)
T ss_pred HHHHhc
Confidence 988754
|
|
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-44 Score=366.35 Aligned_cols=218 Identities=29% Similarity=0.489 Sum_probs=186.9
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
.|+++||++.| +++.+|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++..
T Consensus 5 ~l~~~~l~~~~--------~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~ 74 (257)
T PRK10619 5 KLNVIDLHKRY--------GEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEK--PSEGSIVVNGQTINLVRD 74 (257)
T ss_pred cEEEeeeEEEE--------CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEcccccc
Confidence 58999999998 24579999999999999999999999999999999999653 568999999987631
Q ss_pred --------------hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccc-cccccC
Q 008534 226 --------------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQ-DTMIGG 290 (562)
Q Consensus 226 --------------~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-~t~vg~ 290 (562)
.+++.++||+|++.+++.+||+||+.++..... ........+++.++++.+|+.+.. +.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~---- 148 (257)
T PRK10619 75 KDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL--GLSKQEARERAVKYLAKVGIDERAQGK---- 148 (257)
T ss_pred cccccccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHcCCChhhhhC----
Confidence 345679999999999998999999987542111 123444566788999999997643 33
Q ss_pred cccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEc
Q 008534 291 SFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG 370 (562)
Q Consensus 291 ~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~ 370 (562)
.+.+||||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++.|+|||++||++. .+..+||+|++|+
T Consensus 149 -~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~-~~~~~~d~i~~l~ 226 (257)
T PRK10619 149 -YPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSSHVIFLH 226 (257)
T ss_pred -CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEE
Confidence 35789999999999999999999999999999999999999999999999877999999999976 4667899999999
Q ss_pred CCeEEEecChHHHH
Q 008534 371 KGSLLYFGKASEAM 384 (562)
Q Consensus 371 ~G~iv~~G~~~el~ 384 (562)
+|++++.|+++++.
T Consensus 227 ~G~i~~~~~~~~~~ 240 (257)
T PRK10619 227 QGKIEEEGAPEQLF 240 (257)
T ss_pred CCEEEEeCCHHHhh
Confidence 99999999988764
|
|
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-45 Score=364.22 Aligned_cols=218 Identities=27% Similarity=0.526 Sum_probs=187.2
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
+++++||+++| +++.+|+|+||+|++|++++|+||||||||||+++|+|.+. +.+|+|.++|.++..
T Consensus 3 ~l~~~~l~~~~--------~~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~ 72 (241)
T PRK10895 3 TLTAKNLAKAY--------KGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVP--RDAGNIIIDDEDISLLPL 72 (241)
T ss_pred eEEEeCcEEEe--------CCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECCCCCH
Confidence 58999999998 24579999999999999999999999999999999999643 568999999998742
Q ss_pred --hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHH
Q 008534 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (562)
Q Consensus 226 --~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqR 303 (562)
..++.++|++|++.+++.+||+||+.+...... .....+...++.++++.+++.+..+. .++.||||||||
T Consensus 73 ~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qr 145 (241)
T PRK10895 73 HARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRD--DLSAEQREDRANELMEEFHIEHLRDS-----MGQSLSGGERRR 145 (241)
T ss_pred HHHHHhCeEEeccCCcccccCcHHHHHhhhhhccc--ccCHHHHHHHHHHHHHHcCCHHHhhc-----chhhCCHHHHHH
Confidence 235679999999999998999999987643221 12233445678889999999765554 356899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHH
Q 008534 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (562)
Q Consensus 304 v~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el 383 (562)
|+|||||+.+|++|||||||+|||+.++..+.+.|+++++.|+|||++||++. .+...||++++|++|++++.|+++++
T Consensus 146 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~~ 224 (241)
T PRK10895 146 VEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVR-ETLAVCERAYIVSQGHLIAHGTPTEI 224 (241)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHH-HHHHhcCEEEEEeCCeEEeeCCHHHH
Confidence 99999999999999999999999999999999999999877999999999975 47789999999999999999998876
Q ss_pred H
Q 008534 384 M 384 (562)
Q Consensus 384 ~ 384 (562)
.
T Consensus 225 ~ 225 (241)
T PRK10895 225 L 225 (241)
T ss_pred h
Confidence 4
|
|
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-44 Score=360.99 Aligned_cols=216 Identities=30% Similarity=0.499 Sum_probs=181.4
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
+|+++||++.|.. ....+++|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|+++|+++..
T Consensus 5 ~l~~~~l~~~~~~----~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~i~~~~~ 78 (233)
T PRK11629 5 LLQCDNLCKRYQE----GSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDT--PTSGDVIFNGQPMSKLSS 78 (233)
T ss_pred eEEEEeEEEEcCC----CCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEcCcCCH
Confidence 6999999999821 0112579999999999999999999999999999999999643 568999999998742
Q ss_pred ----hc-cCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhH
Q 008534 226 ----SL-KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGE 300 (562)
Q Consensus 226 ----~~-~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGq 300 (562)
.. ++.++|++|++.+|+.+||+||+.+..... .....+.++++.++++.+||.+..++. +.+|||||
T Consensus 79 ~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgG~ 150 (233)
T PRK11629 79 AAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIG---KKKPAEINSRALEMLAAVGLEHRANHR-----PSELSGGE 150 (233)
T ss_pred HHHHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhhCC-----hhhCCHHH
Confidence 12 257999999999999999999999865432 123344456788999999998766553 46899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecC
Q 008534 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (562)
Q Consensus 301 rqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (562)
|||++|||||+.+|+||||||||+|||+.++..+.+.|+++++ .|+|||++||++.. +. .+|++++|++|++++.|+
T Consensus 151 ~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~-~~-~~~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 151 RQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQL-AK-RMSRQLEMRDGRLTAELS 228 (233)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-HH-hhCEEEEEECCEEEEEec
Confidence 9999999999999999999999999999999999999999975 58999999999764 44 468999999999998876
Q ss_pred h
Q 008534 380 A 380 (562)
Q Consensus 380 ~ 380 (562)
.
T Consensus 229 ~ 229 (233)
T PRK11629 229 L 229 (233)
T ss_pred c
Confidence 3
|
|
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-44 Score=379.45 Aligned_cols=228 Identities=24% Similarity=0.424 Sum_probs=190.5
Q ss_pred eeEEEEeEEEEEeeccc-----CCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEe
Q 008534 148 IYLKFTDVTYKVILKGM-----TSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP 222 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~-----~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~ 222 (562)
+.|+++||++.|...+. .......+|+||||+|++||+++|+|+||||||||+++|+|.+. +.+|+|.++|.+
T Consensus 7 ~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~--p~~G~I~~~G~~ 84 (331)
T PRK15079 7 VLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVK--ATDGEVAWLGKD 84 (331)
T ss_pred ceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCcEEEECCEE
Confidence 36999999999842110 00113579999999999999999999999999999999999653 468999999998
Q ss_pred CCh-------hccCcEEEEccCC--CCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCc-cccccccCcc
Q 008534 223 YSK-------SLKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-CQDTMIGGSF 292 (562)
Q Consensus 223 ~~~-------~~~~~igyV~Q~~--~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~t~vg~~~ 292 (562)
+.. .+++.|+||+|++ .++|.+||.|||.+......+ ..++++..+++.++++.++|.+ ..+ .+
T Consensus 85 i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~-~~~~~~~~~~~~~~l~~vgl~~~~~~-----~~ 158 (331)
T PRK15079 85 LLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHP-KLSRQEVKDRVKAMMLKVGLLPNLIN-----RY 158 (331)
T ss_pred CCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHcCCChHHhc-----CC
Confidence 742 2467899999998 588899999999987543211 2345556677889999999953 333 45
Q ss_pred cCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcC
Q 008534 293 VRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGK 371 (562)
Q Consensus 293 ~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~ 371 (562)
+++|||||||||+|||||+.+|+|||+||||+|||+.++.++++.|+++.++ |.|+|+|||++. .+.++||+|++|++
T Consensus 159 p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~-~~~~~~dri~vl~~ 237 (331)
T PRK15079 159 PHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLA-VVKHISDRVLVMYL 237 (331)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC
Confidence 6899999999999999999999999999999999999999999999999764 899999999976 46678999999999
Q ss_pred CeEEEecChHHHH
Q 008534 372 GSLLYFGKASEAM 384 (562)
Q Consensus 372 G~iv~~G~~~el~ 384 (562)
|++++.|+++++.
T Consensus 238 G~ive~g~~~~i~ 250 (331)
T PRK15079 238 GHAVELGTYDEVY 250 (331)
T ss_pred CEEEEEcCHHHHH
Confidence 9999999998875
|
|
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-45 Score=372.86 Aligned_cols=222 Identities=23% Similarity=0.430 Sum_probs=186.6
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
.|+++||++.|... ....+++|+||||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++..
T Consensus 2 ~l~~~~l~~~y~~~---~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~--p~~G~i~~~g~~i~~~~~ 76 (286)
T PRK13646 2 TIRFDNVSYTYQKG---TPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLK--PTTGTVTVDDITITHKTK 76 (286)
T ss_pred EEEEEEEEEEECCC---CccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEECccccc
Confidence 48999999998310 0112469999999999999999999999999999999999543 568999999998742
Q ss_pred -----hccCcEEEEccCC--CCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCC-ccccccccCcccCCCC
Q 008534 226 -----SLKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVS 297 (562)
Q Consensus 226 -----~~~~~igyV~Q~~--~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~~LS 297 (562)
.+++.||||||++ .+|+ .||.|||.|+.... ..+..+..+++.++++.+||. +..++ .+..||
T Consensus 77 ~~~~~~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~~LS 147 (286)
T PRK13646 77 DKYIRPVRKRIGMVFQFPESQLFE-DTVEREIIFGPKNF---KMNLDEVKNYAHRLLMDLGFSRDVMSQ-----SPFQMS 147 (286)
T ss_pred cchHHHHHhheEEEecChHhccch-hhHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhC-----CcccCC
Confidence 3567899999986 4676 59999999875432 234455566788999999996 45554 357899
Q ss_pred hhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCcEEEEEecCCChHHHhcCCEEEEEcCCeEEE
Q 008534 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (562)
Q Consensus 298 GGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~ 376 (562)
|||||||+|||||+.+|+||||||||+|||+.++..+.+.|+++.+ .|+|||++||++. .+.++||+|++|++|++++
T Consensus 148 gGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~-~~~~~~dri~~l~~G~i~~ 226 (286)
T PRK13646 148 GGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMN-EVARYADEVIVMKEGSIVS 226 (286)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999975 4899999999976 4668899999999999999
Q ss_pred ecChHHHHH
Q 008534 377 FGKASEAMA 385 (562)
Q Consensus 377 ~G~~~el~~ 385 (562)
.|+++++..
T Consensus 227 ~g~~~~~~~ 235 (286)
T PRK13646 227 QTSPKELFK 235 (286)
T ss_pred ECCHHHHHh
Confidence 999988653
|
|
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-46 Score=355.67 Aligned_cols=219 Identities=26% Similarity=0.496 Sum_probs=195.3
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
.|..+|+.++| +.+.|+++|||+|++||+++|+|||||||||.+.++.|... +++|.|.+||.+++.
T Consensus 4 ~L~a~~l~K~y--------~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~--~d~G~i~ld~~diT~lPm 73 (243)
T COG1137 4 TLVAENLAKSY--------KKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVR--PDSGKILLDDEDITKLPM 73 (243)
T ss_pred EEEehhhhHhh--------CCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEe--cCCceEEECCcccccCCh
Confidence 58899999988 46789999999999999999999999999999999999654 568999999999874
Q ss_pred --hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHH
Q 008534 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (562)
Q Consensus 226 --~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqR 303 (562)
..|..|||+||++..|..|||+|||......+.. .....+.+.+++++|+.|++.+.++.. ...||||||+|
T Consensus 74 ~~RArlGigYLpQE~SIFr~LtV~dNi~~vlE~~~~-d~~~~~~~~~l~~LL~ef~i~hlr~~~-----a~sLSGGERRR 147 (243)
T COG1137 74 HKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREK-DLKKAERKEELDALLEEFHITHLRDSK-----AYSLSGGERRR 147 (243)
T ss_pred HHHhhcCcccccccchHhhcCcHHHHHHHHHhhhhc-chhHHHHHHHHHHHHHHhchHHHhcCc-----ccccccchHHH
Confidence 3355699999999999999999999988766532 223345666788999999999988864 45799999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHH
Q 008534 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (562)
Q Consensus 304 v~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el 383 (562)
+.|||||+.+|+.++||||++|.||.+..+|.++++.|+..|..|+++-|+..+ ...+|||.+++++|++++.|+++++
T Consensus 148 ~EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVRE-tL~i~dRaYIi~~G~vla~G~p~ei 226 (243)
T COG1137 148 VEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRE-TLDICDRAYIISDGKVLAEGSPEEI 226 (243)
T ss_pred HHHHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHH-HHhhhheEEEEecCeEEecCCHHHH
Confidence 999999999999999999999999999999999999999999999999999775 6789999999999999999999997
Q ss_pred H
Q 008534 384 M 384 (562)
Q Consensus 384 ~ 384 (562)
.
T Consensus 227 ~ 227 (243)
T COG1137 227 V 227 (243)
T ss_pred h
Confidence 5
|
|
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-45 Score=363.27 Aligned_cols=215 Identities=24% Similarity=0.433 Sum_probs=182.6
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
+|+++||+++| +.+.+|+|+||+|++||+++|+||||||||||+++|+|.. ++.+|+|.++|.++..
T Consensus 5 ~l~~~~l~~~~--------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~--~p~~G~i~~~g~~~~~~~~ 74 (237)
T PRK11614 5 MLSFDKVSAHY--------GKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDP--RATSGRIVFDGKDITDWQT 74 (237)
T ss_pred EEEEEeEEEee--------CCceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCC--CCCCceEEECCEecCCCCH
Confidence 69999999998 2457999999999999999999999999999999999954 3568999999998742
Q ss_pred --hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHc-CCCccccccccCcccCCCChhHHH
Q 008534 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINEL-GLERCQDTMIGGSFVRGVSGGERK 302 (562)
Q Consensus 226 --~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~l-gL~~~~~t~vg~~~~~~LSGGqrq 302 (562)
..++.++|++|++.+|+.+||.||+.++.... ........+.++++.+ ++.+..++ .+..|||||||
T Consensus 75 ~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~~l~~~~~~-----~~~~LS~G~~q 144 (237)
T PRK11614 75 AKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFA-----ERDQFQERIKWVYELFPRLHERRIQ-----RAGTMSGGEQQ 144 (237)
T ss_pred HHHHHhCEEEeccCcccCCCCcHHHHHHHhhhcc-----ChhHHHHHHHHHHHHHHHHHHHHhC-----chhhCCHHHHH
Confidence 24567999999999999899999998864221 1222334566677776 46544443 35689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHH
Q 008534 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (562)
Q Consensus 303 Rv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~e 382 (562)
|++|||||+.+|+||||||||+|||+.++..+.+.|++++++|+|||++||++. ++.++||++++|++|++++.|++++
T Consensus 145 rl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~ 223 (237)
T PRK11614 145 MLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNAN-QALKLADRGYVLENGHVVLEDTGDA 223 (237)
T ss_pred HHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHhhCCEEEEEeCCEEEeeCCHHH
Confidence 999999999999999999999999999999999999999877999999999975 4778999999999999999999988
Q ss_pred HH
Q 008534 383 AM 384 (562)
Q Consensus 383 l~ 384 (562)
+.
T Consensus 224 ~~ 225 (237)
T PRK11614 224 LL 225 (237)
T ss_pred Hh
Confidence 74
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-45 Score=357.66 Aligned_cols=208 Identities=30% Similarity=0.575 Sum_probs=178.8
Q ss_pred EEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---h
Q 008534 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---S 226 (562)
Q Consensus 150 l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~---~ 226 (562)
|+++||++.| ..+++|+|+||+|++| +++|+||||||||||+++|+|.+. +.+|+|.++|.++.. .
T Consensus 1 i~~~~~~~~~--------~~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~ 69 (211)
T cd03264 1 LQLENLTKRY--------GKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTP--PSSGTIRIDGQDVLKQPQK 69 (211)
T ss_pred CEEEEEEEEE--------CCEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCC--CCccEEEECCCccccchHH
Confidence 4789999998 2347999999999999 999999999999999999999643 568999999987642 3
Q ss_pred ccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHH
Q 008534 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (562)
Q Consensus 227 ~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~I 306 (562)
+++.++|++|++.+|+.+||+||+.+..... .....+..+++.++++.++|.+..++. +..|||||||||+|
T Consensus 70 ~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~l 141 (211)
T cd03264 70 LRRRIGYLPQEFGVYPNFTVREFLDYIAWLK---GIPSKEVKARVDEVLELVNLGDRAKKK-----IGSLSGGMRRRVGI 141 (211)
T ss_pred HHhheEEecCCCcccccCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHHHCCCHHHHhCc-----hhhCCHHHHHHHHH
Confidence 4678999999999999899999999865432 122333455678899999998766654 46899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEec
Q 008534 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (562)
Q Consensus 307 AraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G 378 (562)
||||+.+|++|||||||+|||+.++..+.+.|+++++ +.|||++||++.. +.++||++++|++|++++.|
T Consensus 142 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~~-~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 142 AQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE-DRIVILSTHIVED-VESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEcCCHHH-HHHhCCEEEEEECCEEEecC
Confidence 9999999999999999999999999999999999976 5899999999764 66789999999999998765
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-45 Score=356.97 Aligned_cols=207 Identities=34% Similarity=0.530 Sum_probs=177.1
Q ss_pred EEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh----
Q 008534 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (562)
Q Consensus 150 l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~---- 225 (562)
|+++||++.|. ..+.+|+|+||++++|++++|+||||||||||+++|+|.+. +.+|+|.++|.++..
T Consensus 1 l~~~~l~~~~~-------~~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i~~~~~~ 71 (214)
T cd03292 1 IEFINVTKTYP-------NGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEEL--PTSGTIRVNGQDVSDLRGR 71 (214)
T ss_pred CEEEEEEEEeC-------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEcccCCHH
Confidence 46899999882 12579999999999999999999999999999999999543 568999999998742
Q ss_pred ---hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHH
Q 008534 226 ---SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (562)
Q Consensus 226 ---~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrq 302 (562)
..++.++||+|++.+|+.+|++||+.++...+ ....+...+++.++++.+||.+..++. +.+|||||||
T Consensus 72 ~~~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~q 143 (214)
T cd03292 72 AIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVT---GVPPREIRKRVPAALELVGLSHKHRAL-----PAELSGGEQQ 143 (214)
T ss_pred HHHHHHHheEEEecCchhccCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCC-----hhhcCHHHHH
Confidence 24567999999999999899999999875432 123344456788899999998766654 4689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeE
Q 008534 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374 (562)
Q Consensus 303 Rv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~i 374 (562)
|++|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+..+||++++|++|++
T Consensus 144 rv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~-~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 144 RVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKE-LVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999999999999999777999999999975 46678999999999974
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-44 Score=361.95 Aligned_cols=216 Identities=30% Similarity=0.491 Sum_probs=184.8
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCC----
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---- 224 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~---- 224 (562)
+|+++||++.| ..+.+|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.++.
T Consensus 2 ~l~~~~l~~~~--------~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~ 71 (242)
T PRK11124 2 SIQLNGINCFY--------GAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEM--PRSGTLNIAGNHFDFSKT 71 (242)
T ss_pred EEEEEeeEEEE--------CCeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEecccccc
Confidence 58899999998 24579999999999999999999999999999999999543 56899999999762
Q ss_pred ------hhccCcEEEEccCCCCCCCCCHHHHHHHHH-hhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCC
Q 008534 225 ------KSLKSKIGFVTQDDVLFPHLTVKETLTYAA-LLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVS 297 (562)
Q Consensus 225 ------~~~~~~igyV~Q~~~l~~~lTV~enl~~~~-~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LS 297 (562)
...++.|+|++|++.+|+.+||.||+.+.. ... .....+...++.++++.+|+.+..++. +..||
T Consensus 72 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LS 143 (242)
T PRK11124 72 PSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVL---GLSKDQALARAEKLLERLRLKPYADRF-----PLHLS 143 (242)
T ss_pred cchhhHHHHHhheEEEecCccccCCCcHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCC-----hhhCC
Confidence 124567999999999999999999997532 211 122334456788899999998766654 46899
Q ss_pred hhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEe
Q 008534 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (562)
Q Consensus 298 GGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~ 377 (562)
|||||||+|||||+.+|+||||||||+|||+.++..+.+.|+++.++|+|+|++||++. .+.++||++++|++|++++.
T Consensus 144 ~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~~~~~d~i~~l~~g~i~~~ 222 (242)
T PRK11124 144 GGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVE-VARKTASRVVYMENGHIVEQ 222 (242)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEEECCEEEEe
Confidence 99999999999999999999999999999999999999999999877999999999976 46678999999999999999
Q ss_pred cChHHH
Q 008534 378 GKASEA 383 (562)
Q Consensus 378 G~~~el 383 (562)
|+++++
T Consensus 223 ~~~~~~ 228 (242)
T PRK11124 223 GDASCF 228 (242)
T ss_pred CCHHHh
Confidence 998764
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-44 Score=362.88 Aligned_cols=224 Identities=24% Similarity=0.396 Sum_probs=186.0
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC---CCccEEEECCEeCCh
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP---TVGGSITYNDHPYSK 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~---~~~G~I~i~G~~~~~ 225 (562)
.|+++||+++| +++.+|+|+||+|++||+++|+||||||||||+++|+|.+... +.+|+|.++|.++..
T Consensus 3 ~l~~~~l~~~~--------~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~ 74 (250)
T PRK14247 3 KIEIRDLKVSF--------GQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFK 74 (250)
T ss_pred eEEEEeeEEEE--------CCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCc
Confidence 58999999998 2356999999999999999999999999999999999965321 358999999998742
Q ss_pred ----hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHH
Q 008534 226 ----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGER 301 (562)
Q Consensus 226 ----~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqr 301 (562)
.+++.|+||+|++.+++.+||+||+.++...... .....+..+.+.++++.++|.+..... .+..+.+||||||
T Consensus 75 ~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~~~~LSgG~~ 152 (250)
T PRK14247 75 MDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRL-VKSKKELQERVRWALEKAQLWDEVKDR-LDAPAGKLSGGQQ 152 (250)
T ss_pred CCHHHHhccEEEEeccCccCCCCcHHHHHHHHHHhccc-cCCHHHHHHHHHHHHHHcCCCcchhhh-hcCCcccCCHHHH
Confidence 3567899999999888889999999987532210 012334456688899999986422111 1234578999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChH
Q 008534 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKAS 381 (562)
Q Consensus 302 qRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~ 381 (562)
|||+|||||+.+|+||||||||+|||+.++..+.+.|+++.+ |+|+|++||++. .+.+.||+|++|++|++++.|+++
T Consensus 153 qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~ 230 (250)
T PRK14247 153 QRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKK-DMTIVLVTHFPQ-QAARISDYVAFLYKGQIVEWGPTR 230 (250)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCEEEEEECCeEEEECCHH
Confidence 999999999999999999999999999999999999999865 899999999976 466789999999999999999998
Q ss_pred HHH
Q 008534 382 EAM 384 (562)
Q Consensus 382 el~ 384 (562)
++.
T Consensus 231 ~~~ 233 (250)
T PRK14247 231 EVF 233 (250)
T ss_pred HHH
Confidence 864
|
|
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-44 Score=364.61 Aligned_cols=217 Identities=31% Similarity=0.499 Sum_probs=185.6
Q ss_pred EEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh----
Q 008534 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (562)
Q Consensus 150 l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~---- 225 (562)
|+++||++.| +.+++|+||||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++..
T Consensus 1 i~~~~l~~~~--------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i~~~~~~ 70 (252)
T TIGR03005 1 VRFSDVTKRF--------GILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEP--IDEGQIQVEGEQLYHMPGR 70 (252)
T ss_pred CEEEEEEEEe--------CCeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEccccccc
Confidence 4789999998 23579999999999999999999999999999999999643 468999999987631
Q ss_pred -------------hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcc
Q 008534 226 -------------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSF 292 (562)
Q Consensus 226 -------------~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~ 292 (562)
.+++.++||+|++.+|+.+||.||+.++.... ...........+.++++.+|+.+..+..
T Consensus 71 ~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~----- 143 (252)
T TIGR03005 71 NGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLV--LGMARAEAEKRAMELLDMVGLADKADHM----- 143 (252)
T ss_pred cccccccchhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHcCChhHhhcC-----
Confidence 24678999999999999899999999864211 1123344456788899999997665543
Q ss_pred cCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcC
Q 008534 293 VRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGK 371 (562)
Q Consensus 293 ~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~ 371 (562)
+..||||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++.++ |.|||++||++. .+..+||++++|++
T Consensus 144 ~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~ 222 (252)
T TIGR03005 144 PAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMG-FAREFADRVCFFDK 222 (252)
T ss_pred hhhcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEEEEEEC
Confidence 4689999999999999999999999999999999999999999999999764 899999999976 46688999999999
Q ss_pred CeEEEecChHHHH
Q 008534 372 GSLLYFGKASEAM 384 (562)
Q Consensus 372 G~iv~~G~~~el~ 384 (562)
|++++.|+++++.
T Consensus 223 G~i~~~g~~~~~~ 235 (252)
T TIGR03005 223 GRIVEQGKPDEIF 235 (252)
T ss_pred CEEEEeCCHHHHh
Confidence 9999999988764
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-44 Score=365.14 Aligned_cols=222 Identities=23% Similarity=0.389 Sum_probs=184.2
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC---CCCccEEEECCEeCC
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME---PTVGGSITYNDHPYS 224 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~---~~~~G~I~i~G~~~~ 224 (562)
..|+++||++.| +++.+|+|+||+|++||+++|+||||||||||+++|+|.... ++.+|+|.++|.++.
T Consensus 11 ~~l~~~~l~~~~--------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~ 82 (258)
T PRK14268 11 PQIKVENLNLWY--------GEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIY 82 (258)
T ss_pred eeEEEeeeEEEe--------CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcc
Confidence 379999999988 245699999999999999999999999999999999996531 136899999998863
Q ss_pred h------hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCCh
Q 008534 225 K------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSG 298 (562)
Q Consensus 225 ~------~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSG 298 (562)
. .+++.++||+|++.+|+ +||+||+.++.... ........+++.++++.+++.+..... -+..+..|||
T Consensus 83 ~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~~~~LSg 157 (258)
T PRK14268 83 EPDVDVVELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIH---GANKKDLDGVVENALRSAALWDETSDR-LKSPALSLSG 157 (258)
T ss_pred cccchHHHHhhhEEEEecCCccCc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCCcchhhh-hcCChhhCCH
Confidence 2 24567999999999998 89999999875432 123334455678899999884221111 1234578999
Q ss_pred hHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEec
Q 008534 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (562)
Q Consensus 299 GqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G 378 (562)
||||||+|||||+.+|+||||||||+|||+.++..+.+.|+++++ ++|||++||++. .+.++||+|++|++|++++.|
T Consensus 158 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~~~ 235 (258)
T PRK14268 158 GQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKK-DYTIVIVTHNMQ-QAARISDYTGFFLMGELIEFG 235 (258)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhh-CCEEEEEECCHH-HHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999999865 799999999975 466889999999999999999
Q ss_pred ChHHHH
Q 008534 379 KASEAM 384 (562)
Q Consensus 379 ~~~el~ 384 (562)
+++++.
T Consensus 236 ~~~~~~ 241 (258)
T PRK14268 236 QTRQIF 241 (258)
T ss_pred CHHHHh
Confidence 998763
|
|
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-44 Score=358.49 Aligned_cols=221 Identities=44% Similarity=0.741 Sum_probs=182.8
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC-CCCccEEEECCEeCCh-h
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-PTVGGSITYNDHPYSK-S 226 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~-~~~~G~I~i~G~~~~~-~ 226 (562)
.+.|+||+|+|+.. +..+++|+|+||+|++||+++|+||||||||||+++|+|.+.. .+.+|+|.++|.++.. .
T Consensus 3 ~~~~~~~~~~~~~~----~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~ 78 (226)
T cd03234 3 VLPWWDVGLKAKNW----NKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQ 78 (226)
T ss_pred cceeecceeeeecC----ccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHH
Confidence 46799999998311 0146899999999999999999999999999999999996531 0458999999998753 4
Q ss_pred ccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHH-HHHHcCCCccccccccCcccCCCChhHHHHHH
Q 008534 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAID-VINELGLERCQDTMIGGSFVRGVSGGERKRVC 305 (562)
Q Consensus 227 ~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~-~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ 305 (562)
+++.++|++|++.+|+.+||+||+.|+.....+..........++.+ .++.+++.+..++ .++.|||||||||+
T Consensus 79 ~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrl~ 153 (226)
T cd03234 79 FQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGN-----LVKGISGGERRRVS 153 (226)
T ss_pred hcccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcc-----cccCcCHHHHHHHH
Confidence 56789999999999999999999998764332221122223334555 7888888765554 35789999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEec
Q 008534 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (562)
Q Consensus 306 IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G 378 (562)
|||||+.+|++|||||||+|||+.++..+.+.|+++.++|.|+|++||++..++.+.||++++|++|++++.|
T Consensus 154 laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 154 IAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred HHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 9999999999999999999999999999999999998778999999999754578899999999999999876
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-44 Score=361.83 Aligned_cols=220 Identities=28% Similarity=0.360 Sum_probs=181.9
Q ss_pred EEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh----
Q 008534 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (562)
Q Consensus 150 l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~---- 225 (562)
|+++||+++| +++.+|+|+||+|++||+++|+||||||||||+++|+|.+..++.+|+|.++|.++..
T Consensus 1 l~~~~l~~~~--------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~ 72 (243)
T TIGR01978 1 LKIKDLHVSV--------EDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPD 72 (243)
T ss_pred CeEeeEEEEE--------CCEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHH
Confidence 4789999998 2457999999999999999999999999999999999964113568999999998742
Q ss_pred h-ccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCC----CCccHHHHHHHHHHHHHHcCCCc-cccccccCcccC-CCCh
Q 008534 226 S-LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLP----NTLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVR-GVSG 298 (562)
Q Consensus 226 ~-~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~----~~~~~~~~~~~v~~~l~~lgL~~-~~~t~vg~~~~~-~LSG 298 (562)
. .+..++||+|++.+++.+|++||+.+....... ......+..+++.++++.++|++ ..++. +. .|||
T Consensus 73 ~~~~~~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~~LS~ 147 (243)
T TIGR01978 73 ERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRS-----VNEGFSG 147 (243)
T ss_pred HhhccceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccc-----cccCcCH
Confidence 2 234599999999999999999999876432110 01122333457888999999973 44443 34 5999
Q ss_pred hHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhc-CCEEEEEcCCeEEEe
Q 008534 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHK-FDKLILLGKGSLLYF 377 (562)
Q Consensus 299 GqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~-~D~i~vL~~G~iv~~ 377 (562)
||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++.. +... ||++++|++|++++.
T Consensus 148 G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~-~~~~~~d~i~~l~~G~i~~~ 226 (243)
T TIGR01978 148 GEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRL-LNYIKPDYVHVLLDGRIVKS 226 (243)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHH-HHhhcCCeEEEEeCCEEEEe
Confidence 99999999999999999999999999999999999999999998778999999999764 5566 899999999999999
Q ss_pred cChHHH
Q 008534 378 GKASEA 383 (562)
Q Consensus 378 G~~~el 383 (562)
|+++++
T Consensus 227 g~~~~~ 232 (243)
T TIGR01978 227 GDVELA 232 (243)
T ss_pred cCHHHh
Confidence 998754
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-47 Score=418.31 Aligned_cols=323 Identities=22% Similarity=0.264 Sum_probs=220.7
Q ss_pred HHHHHHHHHHHHHhhcCCCccccccccCCCCcchhhhhhhhhhhcCCCcccccccceeeeeecccccccccccccchhhh
Q 008534 12 RTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSGAAL 91 (562)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 91 (562)
++.++..++..+...|.+...+|+|+|+.+....+++.+......+...+.....+...........-..+..++.|+.+
T Consensus 183 ~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 262 (529)
T TIGR02868 183 VALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAADRELLAAERRAARATGLGAAAQLLAAGLAVLGALWAGGPA 262 (529)
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44466677888899999999999999999999999988766555443222111111110000001111112234567777
Q ss_pred hhhhhhhhhhhcccccCCCCccccc----------------cCCCCCCCCCccccccccCCCCCCCCCCCCceeEEEEeE
Q 008534 92 SRASSASLGLSFSFTGFTMPPDEIA----------------DSKPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLKFTDV 155 (562)
Q Consensus 92 ~~~~~~~~g~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~nv 155 (562)
+..|..+.|.+.++..+........ ..+.....+.++...... .+.....+.....|+|+||
T Consensus 263 ~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~--~~~~~~~~~~~~~I~~~~v 340 (529)
T TIGR02868 263 VADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAERIEEVTGAKGPRPEGV--VPAAGALGLGKPTLELRDL 340 (529)
T ss_pred HhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCCCC--CCCCcccCCCCceEEEEEE
Confidence 7777777777777665432211111 111111111111100000 0000001112236999999
Q ss_pred EEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCC---hhccCcEE
Q 008534 156 TYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---KSLKSKIG 232 (562)
Q Consensus 156 s~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~---~~~~~~ig 232 (562)
+|+|+ +++++|+|+||+|++||.+||+||||||||||+++|+|. ++ +.+|+|.+||.++. +.+|++|+
T Consensus 341 sf~Y~-------~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~-~~-p~~G~I~i~g~~i~~~~~~lr~~i~ 411 (529)
T TIGR02868 341 SFGYP-------GSPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGL-LD-PLQGEVTLDGVSVSSLQDELRRRIS 411 (529)
T ss_pred EEecC-------CCCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcC-CC-CCCcEEEECCEEhhhHHHHHHhheE
Confidence 99983 124699999999999999999999999999999999984 54 45899999999876 35678999
Q ss_pred EEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHH-----HHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHH
Q 008534 233 FVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEK-----RAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (562)
Q Consensus 233 yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~-----~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA 307 (562)
||+|++.+|+. |++|||.++. + ..++++..+ .+++.++ .|++.+||.+|+.. ..||||||||++||
T Consensus 412 ~V~Q~~~lF~~-TI~eNI~~g~----~-~~~~e~i~~al~~a~l~~~i~--~lp~GldT~ige~G-~~LSGGQrQRiaiA 482 (529)
T TIGR02868 412 VFAQDAHLFDT-TVRDNLRLGR----P-DATDEELWAALERVGLADWLR--SLPDGLDTVLGEGG-ARLSGGERQRLALA 482 (529)
T ss_pred EEccCcccccc-cHHHHHhccC----C-CCCHHHHHHHHHHcCCHHHHH--hCcccccchhcccc-CcCCHHHHHHHHHH
Confidence 99999999975 9999999863 1 122222221 1223333 35778899998754 56999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCC
Q 008534 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQP 355 (562)
Q Consensus 308 raLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~ 355 (562)
|||+++|+|||||||||+||+.++..|.+.|+++. +++|+|++||++
T Consensus 483 Rall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~-~~~TvIiItHrl 529 (529)
T TIGR02868 483 RALLADAPILLLDEPTEHLDAGTESELLEDLLAAL-SGKTVVVITHHL 529 (529)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEecCC
Confidence 99999999999999999999999999999999864 479999999984
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-44 Score=371.28 Aligned_cols=221 Identities=27% Similarity=0.434 Sum_probs=185.7
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
.|+++||++.|... ....+.+|+||||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|+++..
T Consensus 2 ~i~~~~l~~~~~~~---~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~ 76 (287)
T PRK13641 2 SIKFENVDYIYSPG---TPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLK--PSSGTITIAGYHITPETG 76 (287)
T ss_pred EEEEEEEEEEcCCC---CCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEECccccc
Confidence 48899999998210 0012579999999999999999999999999999999999653 568999999998642
Q ss_pred -----hccCcEEEEccCC--CCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCC-ccccccccCcccCCCC
Q 008534 226 -----SLKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVS 297 (562)
Q Consensus 226 -----~~~~~igyV~Q~~--~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~~LS 297 (562)
..++.|+|++|++ .+| .+||.||+.|+.... ....++..+++.++++.+||. +..++ .++.||
T Consensus 77 ~~~~~~~~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~~LS 147 (287)
T PRK13641 77 NKNLKKLRKKVSLVFQFPEAQLF-ENTVLKDVEFGPKNF---GFSEDEAKEKALKWLKKVGLSEDLISK-----SPFELS 147 (287)
T ss_pred cchHHHHHhceEEEEeChhhhhc-cchHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhhC-----CcccCC
Confidence 2456799999997 456 479999999875432 223445556788999999996 45554 356899
Q ss_pred hhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEe
Q 008534 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (562)
Q Consensus 298 GGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~ 377 (562)
|||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++|.|||++||++. .+...||+|++|++|++++.
T Consensus 148 gGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~-~~~~~~d~v~~l~~G~i~~~ 226 (287)
T PRK13641 148 GGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMD-DVAEYADDVLVLEHGKLIKH 226 (287)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEe
Confidence 99999999999999999999999999999999999999999999877999999999976 46789999999999999999
Q ss_pred cChHHHH
Q 008534 378 GKASEAM 384 (562)
Q Consensus 378 G~~~el~ 384 (562)
|+++++.
T Consensus 227 g~~~~~~ 233 (287)
T PRK13641 227 ASPKEIF 233 (287)
T ss_pred CCHHHHh
Confidence 9998864
|
|
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-44 Score=363.38 Aligned_cols=224 Identities=23% Similarity=0.390 Sum_probs=185.0
Q ss_pred ceeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC-CC--CCccEEEECCEeC
Q 008534 147 PIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLM-EP--TVGGSITYNDHPY 223 (562)
Q Consensus 147 ~~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~-~~--~~~G~I~i~G~~~ 223 (562)
|+.|+++||+++| +++.+|+|+||+|++||+++|+||||||||||+++|+|... .+ +.+|+|.++|+++
T Consensus 4 ~~~l~~~~l~~~~--------~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i 75 (253)
T PRK14242 4 PPKMEARGLSFFY--------GDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENI 75 (253)
T ss_pred CcEEEEeeeEEEE--------CCeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEc
Confidence 4479999999998 23569999999999999999999999999999999999642 12 3689999999987
Q ss_pred Ch------hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCC
Q 008534 224 SK------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVS 297 (562)
Q Consensus 224 ~~------~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LS 297 (562)
.. .+++.|+||+|++.+|+ .||+||+.++...+. ........+++.++++.+++.+...... +..+..||
T Consensus 76 ~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS 151 (253)
T PRK14242 76 YDPHVDVVELRRRVGMVFQKPNPFP-KSIFENVAYGLRVNG--VKDKAYLAERVERSLRHAALWDEVKDRL-HESALGLS 151 (253)
T ss_pred cccccCHHHHhhcEEEEecCCCCCc-CcHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCchhhhHHh-hCCcccCC
Confidence 42 34678999999999998 599999998754321 1123334566788899998854222111 23467899
Q ss_pred hhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEe
Q 008534 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (562)
Q Consensus 298 GGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~ 377 (562)
|||||||+|||||+.+|+||||||||+|||+.++..+.+.|+++.+ ++|||++||++. .+.+.||+|++|++|++++.
T Consensus 152 gGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~tH~~~-~~~~~~d~v~~l~~G~i~~~ 229 (253)
T PRK14242 152 GGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKA-RYTIIIVTHNMQ-QAARVSDVTAFFYMGKLIEV 229 (253)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCeEEEEEecHH-HHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999999964 799999999975 46688999999999999999
Q ss_pred cChHHHH
Q 008534 378 GKASEAM 384 (562)
Q Consensus 378 G~~~el~ 384 (562)
|+++++.
T Consensus 230 g~~~~~~ 236 (253)
T PRK14242 230 GPTEQIF 236 (253)
T ss_pred CCHHHHH
Confidence 9988763
|
|
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-47 Score=398.69 Aligned_cols=344 Identities=24% Similarity=0.297 Sum_probs=241.8
Q ss_pred HHHHHHHhhcCCCccccccccCCCCcchhhhhhhhhhhcCCCcccccccceeeeeeccccccccccccc----chhhhhh
Q 008534 18 LVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVS----SGAALSR 93 (562)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~~~~~ 93 (562)
--|+-+.+-.|.-+-|||+-|+++.-|-..|...+.+-...+.+. ++.=.+ ..-.|..+-..++. .++..+.
T Consensus 394 ~nesrAr~vDsllNFETVKyy~Ae~yEverYreAil~Yqk~E~ks-~~sLnf---LN~~Qn~Ii~lgll~gsll~aY~Vt 469 (790)
T KOG0056|consen 394 WNESRARQVDSLLNFETVKYYNAEDYEVERYREAILKYQKQEWKS-LASLNF---LNIVQNGIIGLGLLAGSLLCAYRVT 469 (790)
T ss_pred hhhhhhhhhhhhhcchhhhccCchhhhHHHHHHHHHHHHHHHHHH-HHHHHH---HHHHhhhhhhhHHhhhhheeeeeee
Confidence 344555566777788999999999888887776554332211110 000000 01122211111221 3444555
Q ss_pred hhhhhhhhhcccccCCCCccccccC----------------CCCCCCCCccccccccCCCCCCCCCCCCceeEEEEeEEE
Q 008534 94 ASSASLGLSFSFTGFTMPPDEIADS----------------KPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLKFTDVTY 157 (562)
Q Consensus 94 ~~~~~~g~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~nvs~ 157 (562)
......|...-|..|.+.....-.. ..|...+-.+++... |...+.......++|+||+|
T Consensus 470 ~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nfiDmEnmfdllkee~eVvd~----P~a~pl~~~~G~i~fsnvtF 545 (790)
T KOG0056|consen 470 EQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFIDMENMFDLLKEEPEVVDL----PGAPPLKVTQGKIEFSNVTF 545 (790)
T ss_pred eccccccceehHHHHHHHHhCchHHHHHHHHHHHHhhhhHHHHHHHhhcCchhhcC----CCCCCccccCCeEEEEEeEE
Confidence 6677777766665543322111000 001111101111111 11111112234799999999
Q ss_pred EEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCC----hhccCcEEE
Q 008534 158 KVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS----KSLKSKIGF 233 (562)
Q Consensus 158 ~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~----~~~~~~igy 233 (562)
.|. .++++|+||||++.||+.+|||||||+||||++++|- |+++. .+|.|.+||++++ ..+|+.||.
T Consensus 546 ~Y~-------p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLf-Rffdv-~sGsI~iDgqdIrnvt~~SLRs~IGV 616 (790)
T KOG0056|consen 546 AYD-------PGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLF-RFFDV-NSGSITIDGQDIRNVTQSSLRSSIGV 616 (790)
T ss_pred ecC-------CCCceeecceEEecCCcEEEEECCCCCchhHHHHHHH-HHhhc-cCceEEEcCchHHHHHHHHHHHhcCc
Confidence 983 4789999999999999999999999999999999999 56654 4899999999986 368999999
Q ss_pred EccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhC
Q 008534 234 VTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIIN 313 (562)
Q Consensus 234 V~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~ 313 (562)
||||..||++ |+..||.|+..-...+.+..+.+.+.+++- .+++++.++|.||.+..+ |||||||||+|||+++++
T Consensus 617 VPQDtvLFNd-TI~yNIryak~~AsneevyaAAkAA~IHdr--Il~fPegY~t~VGERGLk-LSGGEKQRVAiARtiLK~ 692 (790)
T KOG0056|consen 617 VPQDTVLFND-TILYNIRYAKPSASNEEVYAAAKAAQIHDR--ILQFPEGYNTRVGERGLK-LSGGEKQRVAIARTILKA 692 (790)
T ss_pred ccCcceeecc-eeeeheeecCCCCChHHHHHHHHHhhHHHH--HhcCchhhhhhhhhcccc-cCCcchhhHHHHHHHhcC
Confidence 9999999975 999999998432221222222233333433 367899999999987665 999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHHH
Q 008534 314 PSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (562)
Q Consensus 314 P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~~ 385 (562)
|.|++|||+||+||..+++.|...|.++++ ++|.|++.|++++ .-.+|.|+++++|+|++.|.|+|++.
T Consensus 693 P~iIlLDEATSALDT~tER~IQaaL~rlca-~RTtIVvAHRLST--ivnAD~ILvi~~G~IvErG~HeeLl~ 761 (790)
T KOG0056|consen 693 PSIILLDEATSALDTNTERAIQAALARLCA-NRTTIVVAHRLST--IVNADLILVISNGRIVERGRHEELLK 761 (790)
T ss_pred CcEEEEcchhhhcCCccHHHHHHHHHHHhc-CCceEEEeeeehh--eecccEEEEEeCCeEeecCcHHHHHh
Confidence 999999999999999999999999999986 8999999999986 35699999999999999999999975
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-44 Score=367.26 Aligned_cols=217 Identities=22% Similarity=0.430 Sum_probs=183.9
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCC----
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---- 224 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~---- 224 (562)
+|+++||+++| +++.+|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|+++.
T Consensus 1 ml~~~~l~~~~--------~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~ 70 (271)
T PRK13638 1 MLATSDLWFRY--------QDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLR--PQKGAVLWQGKPLDYSKR 70 (271)
T ss_pred CeEEEEEEEEc--------CCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCccEEEECCEEcccccC
Confidence 37899999998 24569999999999999999999999999999999999653 56899999999873
Q ss_pred --hhccCcEEEEccCCCC-CCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHH
Q 008534 225 --KSLKSKIGFVTQDDVL-FPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGER 301 (562)
Q Consensus 225 --~~~~~~igyV~Q~~~l-~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqr 301 (562)
..+++.|+||+|++.+ +...|+.+|+.++.... .....+..+++.++++.+||.+..++. +..||||||
T Consensus 71 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~ 142 (271)
T PRK13638 71 GLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNL---GVPEAEITRRVDEALTLVDAQHFRHQP-----IQCLSHGQK 142 (271)
T ss_pred CHHHHHhheEEEeeChhhccccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHhHhcCC-----chhCCHHHH
Confidence 1345679999999752 33468999998864332 123344455678899999997766553 468999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChH
Q 008534 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKAS 381 (562)
Q Consensus 302 qRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~ 381 (562)
||++|||||+.+|+||||||||+|||+.++..+.+.|++++++|+|||++||++. .+..+||++++|++|++++.|+++
T Consensus 143 qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~-~~~~~~d~i~~l~~G~i~~~g~~~ 221 (271)
T PRK13638 143 KRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDID-LIYEISDAVYVLRQGQILTHGAPG 221 (271)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHH
Confidence 9999999999999999999999999999999999999999877899999999975 466889999999999999999998
Q ss_pred HHH
Q 008534 382 EAM 384 (562)
Q Consensus 382 el~ 384 (562)
++.
T Consensus 222 ~~~ 224 (271)
T PRK13638 222 EVF 224 (271)
T ss_pred HHh
Confidence 764
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-44 Score=369.03 Aligned_cols=219 Identities=26% Similarity=0.450 Sum_probs=187.5
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
.|+++||++.|. ...+++|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|+++..
T Consensus 5 ~l~~~~l~~~~~------~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~--p~~G~i~~~g~~i~~~~~ 76 (279)
T PRK13635 5 IIRVEHISFRYP------DAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLL--PEAGTITVGGMVLSEETV 76 (279)
T ss_pred eEEEEEEEEEeC------CCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECCEECCcCcH
Confidence 599999999982 123569999999999999999999999999999999999653 568999999998752
Q ss_pred -hccCcEEEEccCCC-CCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHH
Q 008534 226 -SLKSKIGFVTQDDV-LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (562)
Q Consensus 226 -~~~~~igyV~Q~~~-l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqR 303 (562)
..++.|+|++|++. +++.+||.|||.++.... .....+..+++.++++.+||.+..++. +..||||||||
T Consensus 77 ~~~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~LS~G~~qr 148 (279)
T PRK13635 77 WDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENI---GVPREEMVERVDQALRQVGMEDFLNRE-----PHRLSGGQKQR 148 (279)
T ss_pred HHHhhheEEEEeCHHHhcccccHHHHHhhhHhhC---CCCHHHHHHHHHHHHHHcCChhhhhCC-----cccCCHHHHHH
Confidence 34567999999973 566689999999875432 233445556788999999998776654 46899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHH
Q 008534 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (562)
Q Consensus 304 v~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~e 382 (562)
|+|||||+.+|+||||||||+|||+.++..+++.|++++++ |+|||++||++.. +. .||+|++|++|++++.|++++
T Consensus 149 v~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~-~~-~~d~i~~l~~G~i~~~g~~~~ 226 (279)
T PRK13635 149 VAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDE-AA-QADRVIVMNKGEILEEGTPEE 226 (279)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHH-HH-cCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999999999875 8999999999764 54 599999999999999999988
Q ss_pred HHH
Q 008534 383 AMA 385 (562)
Q Consensus 383 l~~ 385 (562)
+..
T Consensus 227 ~~~ 229 (279)
T PRK13635 227 IFK 229 (279)
T ss_pred Hhc
Confidence 753
|
|
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-46 Score=421.16 Aligned_cols=354 Identities=21% Similarity=0.249 Sum_probs=240.3
Q ss_pred HHHHHHHHHHHHHHhhcCCCccccccccCCCCcchhhhhhhhhhhcCCCcccccccceeeeeecccccccccccccchhh
Q 008534 11 ARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSGAA 90 (562)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 90 (562)
.+..++..++..+...|.+.+.+||++|+.+..+.+++.+......+...+.....+...........-..+.-+..|+.
T Consensus 184 ~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~ 263 (585)
T TIGR01192 184 QAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVLDWWALASGLNRMASTISMMCILVIGTV 263 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34446667778889999999999999999988888887765554432211100000000000000000111223456777
Q ss_pred hhhhhhhhhhhhcccccCCCCccc----cccCCC------CCCCCCccccccccC--CCCCCCCCCCCceeEEEEeEEEE
Q 008534 91 LSRASSASLGLSFSFTGFTMPPDE----IADSKP------FSDDDIPEDIEAGTR--ERPKFQTEPTLPIYLKFTDVTYK 158 (562)
Q Consensus 91 ~~~~~~~~~g~~~~~~~~~~~~~~----~~~~~~------~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~nvs~~ 158 (562)
++..+..+.|.++++..+...... +..... .+..++.+..+..+. ........+.....++++||+|+
T Consensus 264 ~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~ 343 (585)
T TIGR01192 264 LVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQREEPADAPELPNVKGAVEFRHITFE 343 (585)
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCccCCCCCCCCCeEEEEEEEEE
Confidence 777777777777666543321111 110000 000000000100000 00000001111235999999999
Q ss_pred EeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh----hccCcEEEE
Q 008534 159 VILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFV 234 (562)
Q Consensus 159 y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~----~~~~~igyV 234 (562)
|+ +.+++|+|+||+|++||.++|+||||||||||+++|+|. ++ +.+|+|.+||.++.+ .+++.++||
T Consensus 344 y~-------~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~-~~-~~~G~i~~~g~~~~~~~~~~~~~~i~~v 414 (585)
T TIGR01192 344 FA-------NSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRV-YD-PTVGQILIDGIDINTVTRESLRKSIATV 414 (585)
T ss_pred CC-------CCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccC-CC-CCCCEEEECCEEhhhCCHHHHHhheEEE
Confidence 82 124689999999999999999999999999999999985 43 568999999998753 567889999
Q ss_pred ccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHH-----HHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHH
Q 008534 235 TQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKR-----AIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNE 309 (562)
Q Consensus 235 ~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~-----v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAra 309 (562)
+|++.+|+ .|++|||.++. + ..++++..+. +++.+. .+++..+|.+|.. ...||||||||++||||
T Consensus 415 ~q~~~lf~-~ti~~Ni~~~~----~-~~~~~~~~~a~~~~~~~~~i~--~l~~g~~t~~~~~-~~~LSgGq~qrl~lARa 485 (585)
T TIGR01192 415 FQDAGLFN-RSIRENIRLGR----E-GATDEEVYEAAKAAAAHDFIL--KRSNGYDTLVGER-GNRLSGGERQRLAIARA 485 (585)
T ss_pred ccCCccCc-ccHHHHHhcCC----C-CCCHHHHHHHHHHhCcHHHHH--hccccccchhcCC-CCCCCHHHHHHHHHHHH
Confidence 99999997 59999999863 1 1223322222 222222 3466678887754 56799999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHHH
Q 008534 310 IIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (562)
Q Consensus 310 Ll~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~~ 385 (562)
|+++|++|||||||++||+.++..+.+.|+++. +++|+|++||+++. ...||+|++|++|++++.|+++++++
T Consensus 486 ll~~p~ililDEpts~LD~~~~~~i~~~l~~~~-~~~tvI~isH~~~~--~~~~d~i~~l~~G~i~~~g~~~~l~~ 558 (585)
T TIGR01192 486 ILKNAPILVLDEATSALDVETEARVKNAIDALR-KNRTTFIIAHRLST--VRNADLVLFLDQGRLIEKGSFQELIQ 558 (585)
T ss_pred HhcCCCEEEEECCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcChHH--HHcCCEEEEEECCEEEEECCHHHHHH
Confidence 999999999999999999999999999999875 48999999999854 46799999999999999999999864
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-44 Score=363.36 Aligned_cols=219 Identities=23% Similarity=0.368 Sum_probs=183.3
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC---CCccEEEECCEeCC
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP---TVGGSITYNDHPYS 224 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~---~~~G~I~i~G~~~~ 224 (562)
..|+++||++.| +++.+|+||||+|++||+++|+||||||||||+++|+|.+... +.+|+|.++|.++.
T Consensus 6 ~~l~~~~l~~~~--------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~ 77 (254)
T PRK14273 6 AIIETENLNLFY--------TDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIY 77 (254)
T ss_pred ceEEEeeeEEEe--------CCceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecc
Confidence 379999999998 2356999999999999999999999999999999999965321 24899999999863
Q ss_pred ------hhccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCC----ccccccccCcccC
Q 008534 225 ------KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE----RCQDTMIGGSFVR 294 (562)
Q Consensus 225 ------~~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~t~vg~~~~~ 294 (562)
...++.|+||+|++.+|+ +||+||+.++..... .......++++.++++.+++. +..++ .+.
T Consensus 78 ~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~-----~~~ 149 (254)
T PRK14273 78 SNNFDILELRRKIGMVFQTPNPFL-MSIYDNISYGPKIHG--TKDKKKLDEIVEQSLKKSALWNEVKDKLNT-----NAL 149 (254)
T ss_pred cccccHHHHhhceEEEeecccccc-CcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHhCCchhhHHHHhC-----Ccc
Confidence 134677999999998885 899999998754321 112333455678888888873 23343 457
Q ss_pred CCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeE
Q 008534 295 GVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374 (562)
Q Consensus 295 ~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~i 374 (562)
+|||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++++ +.|||++||++. .+.++||+|++|++|++
T Consensus 150 ~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~sH~~~-~~~~~~d~i~~l~~G~i 227 (254)
T PRK14273 150 SLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKE-SYTIIIVTHNMQ-QAGRISDRTAFFLNGCI 227 (254)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEECCEE
Confidence 8999999999999999999999999999999999999999999999964 799999999976 46688999999999999
Q ss_pred EEecChHHHH
Q 008534 375 LYFGKASEAM 384 (562)
Q Consensus 375 v~~G~~~el~ 384 (562)
++.|+++++.
T Consensus 228 ~~~g~~~~~~ 237 (254)
T PRK14273 228 EEESSTDELF 237 (254)
T ss_pred EEeCCHHHHH
Confidence 9999998874
|
|
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-45 Score=358.64 Aligned_cols=220 Identities=26% Similarity=0.473 Sum_probs=194.3
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
.++.++|+++| ++-.+++||||++++||+++|+||||||||||+|+|+|.+. |++|+|.++|++++.
T Consensus 4 lL~v~~l~k~F--------GGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~--P~~G~v~~~G~~it~l~p 73 (250)
T COG0411 4 LLEVRGLSKRF--------GGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYK--PSSGTVIFRGRDITGLPP 73 (250)
T ss_pred eeeeccceeec--------CCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeeccccc--CCCceEEECCcccCCCCH
Confidence 58899999988 46789999999999999999999999999999999999653 568999999999863
Q ss_pred --hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCC--------CC-CccHHHHHHHHHHHHHHcCCCccccccccCcccC
Q 008534 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRL--------PN-TLTKQQKEKRAIDVINELGLERCQDTMIGGSFVR 294 (562)
Q Consensus 226 --~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~--------~~-~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~ 294 (562)
..+..|+--||...+|++|||.||+..+...+. +. .....+..+++.++|+.+||.+.+|+.. .
T Consensus 74 ~~iar~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A-----~ 148 (250)
T COG0411 74 HRIARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPA-----G 148 (250)
T ss_pred HHHHhccceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchh-----h
Confidence 235668899999999999999999999865321 11 1124555678899999999999999865 4
Q ss_pred CCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCe
Q 008534 295 GVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGS 373 (562)
Q Consensus 295 ~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~ 373 (562)
+||+|||||+.|||||+.+|++|+||||.+||.+....++.+.|+++.+. |.||++|.||+. .++.+||||+||+.|+
T Consensus 149 ~LsyG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~-~Vm~l~dri~Vl~~G~ 227 (250)
T COG0411 149 NLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMK-LVMGLADRIVVLNYGE 227 (250)
T ss_pred cCChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccH-HHhhhccEEEeccCCc
Confidence 79999999999999999999999999999999999999999999999874 799999999976 5899999999999999
Q ss_pred EEEecChHHHH
Q 008534 374 LLYFGKASEAM 384 (562)
Q Consensus 374 iv~~G~~~el~ 384 (562)
+++.|+|+++.
T Consensus 228 ~IAeG~P~eV~ 238 (250)
T COG0411 228 VIAEGTPEEVR 238 (250)
T ss_pred CcccCCHHHHh
Confidence 99999999975
|
|
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-44 Score=361.94 Aligned_cols=224 Identities=24% Similarity=0.389 Sum_probs=185.0
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC---CCccEEEECCEeCC-
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP---TVGGSITYNDHPYS- 224 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~---~~~G~I~i~G~~~~- 224 (562)
.|+++||++.| ..+++|+|+||+|++||+++|+||||||||||+++|+|.+... +.+|+|+++|+++.
T Consensus 4 ~l~~~~l~~~~--------~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~ 75 (253)
T PRK14267 4 AIETVNLRVYY--------GSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYS 75 (253)
T ss_pred eEEEEeEEEEe--------CCeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccc
Confidence 68999999998 2356999999999999999999999999999999999965321 24899999999874
Q ss_pred -----hhccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChh
Q 008534 225 -----KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (562)
Q Consensus 225 -----~~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGG 299 (562)
..+++.++|++|++.+|+.+||.||+.++...+.. .........++.++++.+++.+..... -+..+..||||
T Consensus 76 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~~~~LS~G 153 (253)
T PRK14267 76 PDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGL-VKSKKELDERVEWALKKAALWDEVKDR-LNDYPSNLSGG 153 (253)
T ss_pred cccChHHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCc-cCCHHHHHHHHHHHHHHcCCccchhhh-hccChhhCCHH
Confidence 13466899999999999989999999987543210 012333445678888988885321111 12345789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecC
Q 008534 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (562)
Q Consensus 300 qrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (562)
||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++. .+..+||+|++|++|++++.|+
T Consensus 154 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~ 231 (253)
T PRK14267 154 QRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK-EYTIVLVTHSPA-QAARVSDYVAFLYLGKLIEVGP 231 (253)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh-CCEEEEEECCHH-HHHhhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999975 699999999975 4678899999999999999999
Q ss_pred hHHHH
Q 008534 380 ASEAM 384 (562)
Q Consensus 380 ~~el~ 384 (562)
++++.
T Consensus 232 ~~~~~ 236 (253)
T PRK14267 232 TRKVF 236 (253)
T ss_pred HHHHH
Confidence 98864
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-44 Score=360.36 Aligned_cols=219 Identities=26% Similarity=0.414 Sum_probs=185.3
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
.|+++||++.| +++++|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++..
T Consensus 2 ~i~~~~l~~~~--------~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~~~~ 71 (242)
T TIGR03411 2 ILYLEGLSVSF--------DGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTR--PDEGSVLFGGTDLTGLPE 71 (242)
T ss_pred eEEEEeeEEEc--------CCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEEECCeecCCCCH
Confidence 58899999988 23579999999999999999999999999999999999643 568999999998742
Q ss_pred --hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCC--C---CccHHHHHHHHHHHHHHcCCCccccccccCcccCCCCh
Q 008534 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLP--N---TLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSG 298 (562)
Q Consensus 226 --~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~--~---~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSG 298 (562)
..++.++|++|++.+|+.+||+||+.++...... . ....+....++.++++.+|+.+..++. ++.|||
T Consensus 72 ~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~ 146 (242)
T TIGR03411 72 HQIARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRL-----AGLLSH 146 (242)
T ss_pred HHHHhcCeeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCC-----hhhCCH
Confidence 1245699999999999999999999986432100 0 011233456788999999998766654 468999
Q ss_pred hHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEec
Q 008534 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (562)
Q Consensus 299 GqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G 378 (562)
||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++.+ ++|||++||++. .+.++||+|++|++|++++.|
T Consensus 147 Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~g~~~~~~ 224 (242)
T TIGR03411 147 GQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG-KHSVVVVEHDME-FVRSIADKVTVLHQGSVLAEG 224 (242)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc-CCEEEEEECCHH-HHHHhCCEEEEEECCeEEeeC
Confidence 999999999999999999999999999999999999999999976 789999999975 467889999999999999999
Q ss_pred ChHHHH
Q 008534 379 KASEAM 384 (562)
Q Consensus 379 ~~~el~ 384 (562)
+++++.
T Consensus 225 ~~~~~~ 230 (242)
T TIGR03411 225 SLDQVQ 230 (242)
T ss_pred CHHHHh
Confidence 988763
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-46 Score=420.25 Aligned_cols=353 Identities=24% Similarity=0.324 Sum_probs=244.1
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCccccccccCCCCcchhhhhhhhhhhcCCCcccccccceeeeeecccccccccccccch
Q 008534 9 SLARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSG 88 (562)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 88 (562)
+.++..++...+..+...+.....+|+|+++.+....+++.+..........+....................+..+..|
T Consensus 184 ~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 263 (576)
T TIGR02204 184 KLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIRTRALLTAIVIVLVFGAIVGVLWVG 263 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666677788888999999999999999999998888888766544332211110000000000011111122334467
Q ss_pred hhhhhhhhhhhhhhcccccCCCCcccccc----------------CCCCCCCCCccccccccCCCCCCCCCCCCceeEEE
Q 008534 89 AALSRASSASLGLSFSFTGFTMPPDEIAD----------------SKPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLKF 152 (562)
Q Consensus 89 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 152 (562)
+.++..+..+.|.++.+..+......... .+.....+.++..+... .+.. ........|++
T Consensus 264 ~~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~--~~~~-~~~~~~~~i~~ 340 (576)
T TIGR02204 264 AHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIKAPA--HPKT-LPVPLRGEIEF 340 (576)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCC--CCcc-CCcCCCceEEE
Confidence 76666677777776665543321111000 01111111111000000 0000 00111236999
Q ss_pred EeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh----hcc
Q 008534 153 TDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLK 228 (562)
Q Consensus 153 ~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~----~~~ 228 (562)
+||+|+|+. ..++++|+|+||+++|||.++|+||||||||||+++|+|. ++ +.+|+|.+||.++.+ .++
T Consensus 341 ~~v~f~y~~-----~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl-~~-p~~G~I~i~g~~i~~~~~~~~~ 413 (576)
T TIGR02204 341 EQVNFAYPA-----RPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRF-YD-PQSGRILLDGVDLRQLDPAELR 413 (576)
T ss_pred EEEEEECCC-----CCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhc-cC-CCCCEEEECCEEHHhcCHHHHH
Confidence 999999831 1236799999999999999999999999999999999995 43 458999999998753 467
Q ss_pred CcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcC-------CCccccccccCcccCCCChhHH
Q 008534 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG-------LERCQDTMIGGSFVRGVSGGER 301 (562)
Q Consensus 229 ~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~t~vg~~~~~~LSGGqr 301 (562)
+.|+||||++.+|+ .|++|||.++. + ..++ +++.++++..+ +++..||.+|+. ...||||||
T Consensus 414 ~~i~~~~Q~~~lf~-~Ti~~Ni~~~~----~-~~~~----~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~-g~~LSgGq~ 482 (576)
T TIGR02204 414 ARMALVPQDPVLFA-ASVMENIRYGR----P-DATD----EEVEAAARAAHAHEFISALPEGYDTYLGER-GVTLSGGQR 482 (576)
T ss_pred HhceEEccCCcccc-ccHHHHHhcCC----C-CCCH----HHHHHHHHHcCcHHHHHhCCCCCCceeCCC-CCcCCHHHH
Confidence 88999999999997 49999998853 1 1222 23334444443 345678888754 467999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChH
Q 008534 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKAS 381 (562)
Q Consensus 302 qRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~ 381 (562)
||++|||||+++|++||||||||+||+.++..+++.|+++. +++|+|++||+++ ....||+|++|++|++++.|+++
T Consensus 483 Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~-~~~t~IiitH~~~--~~~~~d~vi~l~~g~~~~~g~~~ 559 (576)
T TIGR02204 483 QRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLM-KGRTTLIIAHRLA--TVLKADRIVVMDQGRIVAQGTHA 559 (576)
T ss_pred HHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHh-CCCEEEEEecchH--HHHhCCEEEEEECCEEEeeecHH
Confidence 99999999999999999999999999999999999999985 4899999999975 35789999999999999999999
Q ss_pred HHHH
Q 008534 382 EAMA 385 (562)
Q Consensus 382 el~~ 385 (562)
++++
T Consensus 560 ~l~~ 563 (576)
T TIGR02204 560 ELIA 563 (576)
T ss_pred HHHH
Confidence 8754
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-44 Score=375.39 Aligned_cols=227 Identities=25% Similarity=0.430 Sum_probs=190.6
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC--CccEEEECCEeCCh
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPT--VGGSITYNDHPYSK 225 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~--~~G~I~i~G~~~~~ 225 (562)
..|+++||++.|..+ .+...+|+||||+|++||+++|+|+||||||||+++|+|.+. +. .+|+|.++|.++..
T Consensus 11 ~~L~i~~l~~~~~~~----~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~-p~~~~sG~I~~~G~~i~~ 85 (330)
T PRK09473 11 ALLDVKDLRVTFSTP----DGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLA-ANGRIGGSATFNGREILN 85 (330)
T ss_pred ceEEEeCeEEEEecC----CCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCC-CCCCCCeEEEECCEECCc
Confidence 369999999998421 123579999999999999999999999999999999999653 32 38999999998742
Q ss_pred ----h---cc-CcEEEEccCC--CCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCC
Q 008534 226 ----S---LK-SKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRG 295 (562)
Q Consensus 226 ----~---~~-~~igyV~Q~~--~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~ 295 (562)
. +| +.|+||||++ .++|.+|+.+++.+...... .....+..+++.++++.++|++..+. .+.++++
T Consensus 86 ~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~--~~~~~~~~~~~~~~L~~vgL~~~~~~--~~~~p~~ 161 (330)
T PRK09473 86 LPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHK--GMSKAEAFEESVRMLDAVKMPEARKR--MKMYPHE 161 (330)
T ss_pred CCHHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCCChHHH--hcCCccc
Confidence 1 23 4799999998 68899999999987654321 23455556678899999999754322 2356789
Q ss_pred CChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeE
Q 008534 296 VSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374 (562)
Q Consensus 296 LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~i 374 (562)
|||||||||+|||||+.+|+|||+||||+|||+.++..|++.|+++.++ |.|+|+||||+. .+..+||+|++|++|+|
T Consensus 162 LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~~Dri~vm~~G~i 240 (330)
T PRK09473 162 FSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLG-VVAGICDKVLVMYAGRT 240 (330)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHH-HHHHhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999999765 899999999976 46678999999999999
Q ss_pred EEecChHHHH
Q 008534 375 LYFGKASEAM 384 (562)
Q Consensus 375 v~~G~~~el~ 384 (562)
++.|+++++.
T Consensus 241 ve~g~~~~i~ 250 (330)
T PRK09473 241 MEYGNARDVF 250 (330)
T ss_pred EEECCHHHHH
Confidence 9999999875
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-44 Score=375.25 Aligned_cols=227 Identities=26% Similarity=0.389 Sum_probs=188.3
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--CCccEEEECCEeCCh-
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP--TVGGSITYNDHPYSK- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~--~~~G~I~i~G~~~~~- 225 (562)
.|+++||++.|..+ .....+|+||||+|++||+++|+|+||||||||+++|+|.+..+ +++|+|.++|+++..
T Consensus 3 ~L~v~~l~~~~~~~----~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~ 78 (326)
T PRK11022 3 LLNVDKLSVHFGDE----SAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRI 78 (326)
T ss_pred eEEEeCeEEEECCC----CccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcC
Confidence 58999999998321 12246999999999999999999999999999999999965421 368999999998742
Q ss_pred ---h---c-cCcEEEEccCC--CCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCC
Q 008534 226 ---S---L-KSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGV 296 (562)
Q Consensus 226 ---~---~-~~~igyV~Q~~--~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~L 296 (562)
. + ++.|+||||++ .++|.+||.+++........ .....+..+++.++++.+||.+..+ ..+.++++|
T Consensus 79 ~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~--~~~~~~~~~~~~~~L~~~gL~~~~~--~l~~~p~~L 154 (326)
T PRK11022 79 SEKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQ--GGNKKTRRQRAIDLLNQVGIPDPAS--RLDVYPHQL 154 (326)
T ss_pred CHHHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCChHH--HHhCCchhC
Confidence 1 1 24699999998 47889999999876543321 1244556678899999999975221 123467899
Q ss_pred ChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCcEEEEEecCCChHHHhcCCEEEEEcCCeEE
Q 008534 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLL 375 (562)
Q Consensus 297 SGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv 375 (562)
||||||||+|||||+.+|+|||+||||+|||+.++.++++.|+++.+ .|.|+|+|||++.. +.++||+|++|++|+|+
T Consensus 155 SgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~-~~~~adri~vm~~G~iv 233 (326)
T PRK11022 155 SGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLAL-VAEAAHKIIVMYAGQVV 233 (326)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999999976 48999999999764 66889999999999999
Q ss_pred EecChHHHH
Q 008534 376 YFGKASEAM 384 (562)
Q Consensus 376 ~~G~~~el~ 384 (562)
+.|+++++.
T Consensus 234 e~g~~~~~~ 242 (326)
T PRK11022 234 ETGKAHDIF 242 (326)
T ss_pred EECCHHHHh
Confidence 999998875
|
|
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-44 Score=356.80 Aligned_cols=215 Identities=28% Similarity=0.450 Sum_probs=175.2
Q ss_pred EEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh----
Q 008534 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (562)
Q Consensus 150 l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~---- 225 (562)
|+++||+++|..+ ....++|+|+||+|++||+++|+||||||||||+++|+|.+ ++.+|+|.++|.++..
T Consensus 2 l~~~~v~~~~~~~----~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~--~~~~G~i~~~g~~~~~~~~~ 75 (228)
T cd03257 2 LEVKNLSVSFPTG----GGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLL--KPTSGSIIFDGKDLLKLSRR 75 (228)
T ss_pred eEEEeeeEeccCC----CcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCC--CCCCceEEECCEEccccchh
Confidence 7899999998210 01136999999999999999999999999999999999954 3568999999998742
Q ss_pred ---hccCcEEEEccCC--CCCCCCCHHHHHHHHHhhCCCCCccHHHHHHH-HHHHHHHcCCC-ccccccccCcccCCCCh
Q 008534 226 ---SLKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKR-AIDVINELGLE-RCQDTMIGGSFVRGVSG 298 (562)
Q Consensus 226 ---~~~~~igyV~Q~~--~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~-v~~~l~~lgL~-~~~~t~vg~~~~~~LSG 298 (562)
.+++.++|++|++ .+++.+||+||+.+........ ........ +.++++.+++. +..+. .+..|||
T Consensus 76 ~~~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~~LS~ 148 (228)
T cd03257 76 LRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKL--SKKEARKEAVLLLLVGVGLPEEVLNR-----YPHELSG 148 (228)
T ss_pred hHHHhhccEEEEecCchhhcCCcCCHHHHHHHHHHhccCC--cHHHHHHHHHHHHHHHCCCChhHhhC-----CchhcCH
Confidence 3456899999998 5677899999998865432111 11122222 35788899985 34444 3568999
Q ss_pred hHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEe
Q 008534 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (562)
Q Consensus 299 GqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~ 377 (562)
||||||+|||||+.+|+||||||||+|||+.++..+.+.|++++++ |+|||++||++. .+...||+|++|++|++++.
T Consensus 149 G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~ 227 (228)
T cd03257 149 GQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLG-VVAKIADRVAVMYAGKIVEE 227 (228)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEeCCEEEec
Confidence 9999999999999999999999999999999999999999999865 899999999975 46678999999999999876
Q ss_pred c
Q 008534 378 G 378 (562)
Q Consensus 378 G 378 (562)
|
T Consensus 228 g 228 (228)
T cd03257 228 G 228 (228)
T ss_pred C
Confidence 5
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-44 Score=363.66 Aligned_cols=213 Identities=31% Similarity=0.474 Sum_probs=182.3
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhcc
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~ 228 (562)
+|+++||++.| +++.+|+|+||+|++|++++|+||||||||||+++|+|.+. +.+|+|.++|.++.. ..
T Consensus 1 ml~~~~l~~~~--------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~-~~ 69 (255)
T PRK11248 1 MLQISHLYADY--------GGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVP--YQHGSITLDGKPVEG-PG 69 (255)
T ss_pred CEEEEEEEEEe--------CCeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECCC-CC
Confidence 37899999998 23579999999999999999999999999999999999543 568999999998753 33
Q ss_pred CcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHH
Q 008534 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGN 308 (562)
Q Consensus 229 ~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAr 308 (562)
..++|++|++.+++.+||+||+.++...+ .....+..+++.++++.+||.+..++. +..|||||||||+|||
T Consensus 70 ~~~~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgGq~qrl~lar 141 (255)
T PRK11248 70 AERGVVFQNEGLLPWRNVQDNVAFGLQLA---GVEKMQRLEIAHQMLKKVGLEGAEKRY-----IWQLSGGQRQRVGIAR 141 (255)
T ss_pred CcEEEEeCCCccCCCCcHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCChhHhhCC-----hhhCCHHHHHHHHHHH
Confidence 56999999999999899999998865332 123344456788999999997665543 5689999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCcEEEEEecCCChHHHhcCCEEEEEc--CCeEEEecChH
Q 008534 309 EIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLG--KGSLLYFGKAS 381 (562)
Q Consensus 309 aLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~Tvii~tH~~~~~i~~~~D~i~vL~--~G~iv~~G~~~ 381 (562)
||+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++||++. .+..+||+|++|+ +|++++.++.+
T Consensus 142 al~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~-~~~~~~d~i~~l~~~~G~i~~~~~~~ 216 (255)
T PRK11248 142 ALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIE-EAVFMATELVLLSPGPGRVVERLPLN 216 (255)
T ss_pred HHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCCcEEEEEecCC
Confidence 99999999999999999999999999999999854 5899999999976 4678899999998 59999988653
|
|
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-44 Score=355.83 Aligned_cols=209 Identities=27% Similarity=0.473 Sum_probs=178.7
Q ss_pred EEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh----
Q 008534 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (562)
Q Consensus 150 l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~---- 225 (562)
|+++||++.|. .++.+|+|+||+|++||+++|+||||||||||+++|+|.+ ++.+|+|.++|.++..
T Consensus 2 l~~~~l~~~~~-------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~--~~~~G~i~~~g~~i~~~~~~ 72 (222)
T PRK10908 2 IRFEHVSKAYL-------GGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIE--RPSAGKIWFSGHDITRLKNR 72 (222)
T ss_pred EEEEeeEEEec-------CCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC--CCCceEEEECCEEcccCChh
Confidence 78999999882 1357999999999999999999999999999999999954 3568999999998742
Q ss_pred ---hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHH
Q 008534 226 ---SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (562)
Q Consensus 226 ---~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrq 302 (562)
.+++.++|++|++.+++.+||+||+.+..... .....+...++.++++.+++.+..++. +..|||||||
T Consensus 73 ~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~q 144 (222)
T PRK10908 73 EVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIA---GASGDDIRRRVSAALDKVGLLDKAKNF-----PIQLSGGEQQ 144 (222)
T ss_pred HHHHHHhheEEEecCccccccccHHHHHHhHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCC-----chhCCHHHHH
Confidence 14578999999999888899999999875432 123344445678899999998765553 4689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEE
Q 008534 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (562)
Q Consensus 303 Rv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~ 376 (562)
|++|||||+.+|++|||||||+|||+.++..+.+.|++++++|.|||++||++.. +...||+|++|++|+++.
T Consensus 145 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~-~~~~~d~i~~l~~G~i~~ 217 (222)
T PRK10908 145 RVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGL-ISRRSYRMLTLSDGHLHG 217 (222)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH-HHHhCCEEEEEECCEEcc
Confidence 9999999999999999999999999999999999999997778999999999764 667899999999999853
|
|
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-44 Score=368.93 Aligned_cols=215 Identities=25% Similarity=0.425 Sum_probs=183.4
Q ss_pred EEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh----h
Q 008534 151 KFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----S 226 (562)
Q Consensus 151 ~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~----~ 226 (562)
.++||++.| +.+.+|+|+||+|++|++++|+||||||||||+++|+|.+. +.+|+|.++|.++.. .
T Consensus 26 ~~~~~~~~~--------~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~--p~~G~i~i~g~~~~~~~~~~ 95 (269)
T cd03294 26 SKEEILKKT--------GQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIE--PTSGKVLIDGQDIAAMSRKE 95 (269)
T ss_pred hhhhhhhhc--------CCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEccccChhh
Confidence 456777766 35679999999999999999999999999999999999653 568999999998742 1
Q ss_pred ----ccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHH
Q 008534 227 ----LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (562)
Q Consensus 227 ----~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrq 302 (562)
.++.++|++|++.+|+.+||+||+.++.... ........+++.++++.++|.+..++. +.+|||||||
T Consensus 96 ~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~Gq~q 167 (269)
T cd03294 96 LRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQ---GVPRAEREERAAEALELVGLEGWEHKY-----PDELSGGMQQ 167 (269)
T ss_pred hhhhhcCcEEEEecCcccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCC-----cccCCHHHHH
Confidence 1357999999999998899999999875432 122334456788899999998766664 4689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChH
Q 008534 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKAS 381 (562)
Q Consensus 303 Rv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~ 381 (562)
||+|||||+.+|+||||||||+|||+.++..+.+.|++++++ |+|||++||++. .+.++||++++|++|++++.|+++
T Consensus 168 rv~lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~-~~~~~~d~v~~l~~G~i~~~g~~~ 246 (269)
T cd03294 168 RVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLD-EALRLGDRIAIMKDGRLVQVGTPE 246 (269)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999754 899999999975 467889999999999999999988
Q ss_pred HHH
Q 008534 382 EAM 384 (562)
Q Consensus 382 el~ 384 (562)
++.
T Consensus 247 ~~~ 249 (269)
T cd03294 247 EIL 249 (269)
T ss_pred HHH
Confidence 764
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-44 Score=354.39 Aligned_cols=207 Identities=32% Similarity=0.551 Sum_probs=176.9
Q ss_pred EEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh----
Q 008534 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (562)
Q Consensus 150 l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~---- 225 (562)
++++||+++| +.+++|+++||++++|++++|+||||||||||+++|+|.+. +.+|+|.++|.++..
T Consensus 1 l~~~~l~~~~--------~~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~ 70 (213)
T cd03262 1 IEIKNLHKSF--------GDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEE--PDSGTIIIDGLKLTDDKKN 70 (213)
T ss_pred CEEEEEEEEE--------CCeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCccchh
Confidence 4689999998 23579999999999999999999999999999999999543 568999999998731
Q ss_pred --hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHH
Q 008534 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (562)
Q Consensus 226 --~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqR 303 (562)
.+++.++|++|++.+++.+|++||+.++..... .....+..+++.++++.+|+.+..++. +.+||||||||
T Consensus 71 ~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qr 143 (213)
T cd03262 71 INELRQKVGMVFQQFNLFPHLTVLENITLAPIKVK--GMSKAEAEERALELLEKVGLADKADAY-----PAQLSGGQQQR 143 (213)
T ss_pred HHHHHhcceEEecccccCCCCcHHHHHHhHHHHhc--CCCHHHHHHHHHHHHHHcCCHhHhhhC-----ccccCHHHHHH
Confidence 346789999999999998999999998643111 122334456788899999997765654 46899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeE
Q 008534 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374 (562)
Q Consensus 304 v~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~i 374 (562)
++|||||+.+|++|||||||+|||+.++..+.+.|+++++.|+|||++||++. .+.++||+|++|++|++
T Consensus 144 v~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~-~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 144 VAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMG-FAREVADRVIFMDDGRI 213 (213)
T ss_pred HHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999999999999877899999999975 46788999999999974
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-44 Score=367.37 Aligned_cols=217 Identities=26% Similarity=0.452 Sum_probs=185.4
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
+|+++||+++|. ..+.+|+||||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++..
T Consensus 1 ml~~~~l~~~~~-------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~ 71 (274)
T PRK13644 1 MIRLENVSYSYP-------DGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLR--PQKGKVLVSGIDTGDFSK 71 (274)
T ss_pred CEEEEEEEEEcC-------CCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEECCcccc
Confidence 378999999982 13469999999999999999999999999999999999643 568999999998742
Q ss_pred --hccCcEEEEccCCC-CCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHH
Q 008534 226 --SLKSKIGFVTQDDV-LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (562)
Q Consensus 226 --~~~~~igyV~Q~~~-l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrq 302 (562)
.+++.|+||+|++. .+..+||.||+.++.... ........+++.++++.+||.+..++. +..|||||||
T Consensus 72 ~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~G~~q 143 (274)
T PRK13644 72 LQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENL---CLPPIEIRKRVDRALAEIGLEKYRHRS-----PKTLSGGQGQ 143 (274)
T ss_pred HHHHHhheEEEEEChhhhcccchHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCC-----cccCCHHHHH
Confidence 34577999999975 355689999999875332 233445556788899999998766654 4689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHH
Q 008534 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (562)
Q Consensus 303 Rv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~e 382 (562)
||+|||||+.+|+||||||||+|||+.++..+++.|++++++|.|||++||++.. + ..||+|++|++|++++.|++++
T Consensus 144 rv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~-~-~~~d~v~~l~~G~i~~~g~~~~ 221 (274)
T PRK13644 144 CVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEE-L-HDADRIIVMDRGKIVLEGEPEN 221 (274)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHH-H-hhCCEEEEEECCEEEEECCHHH
Confidence 9999999999999999999999999999999999999998779999999999764 5 5699999999999999999887
Q ss_pred HH
Q 008534 383 AM 384 (562)
Q Consensus 383 l~ 384 (562)
+.
T Consensus 222 ~~ 223 (274)
T PRK13644 222 VL 223 (274)
T ss_pred Hh
Confidence 64
|
|
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-44 Score=363.95 Aligned_cols=217 Identities=27% Similarity=0.472 Sum_probs=184.9
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
+|+++||++.| +++.+|+|+||+|++|++++|+||||||||||+++|+|.+. +.+|+|.++|.++..
T Consensus 2 ~l~~~~l~~~~--------~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--p~~G~i~~~g~~~~~~~~ 71 (258)
T PRK13548 2 MLEARNLSVRL--------GGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELS--PDSGEVRLNGRPLADWSP 71 (258)
T ss_pred eEEEEeEEEEe--------CCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEEcccCCH
Confidence 48899999998 24579999999999999999999999999999999999643 568999999998642
Q ss_pred -hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHH
Q 008534 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (562)
Q Consensus 226 -~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 304 (562)
.+++.++|++|++.+++.+||+||+.++.... .........++.++++.++|.+..++. +..|||||||||
T Consensus 72 ~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgGe~qrv 143 (258)
T PRK13548 72 AELARRRAVLPQHSSLSFPFTVEEVVAMGRAPH---GLSRAEDDALVAAALAQVDLAHLAGRD-----YPQLSGGEQQRV 143 (258)
T ss_pred HHhhhheEEEccCCcCCCCCCHHHHHHhhhccc---CCCcHHHHHHHHHHHHHcCCHhHhcCC-----cccCCHHHHHHH
Confidence 34567999999998877899999999864321 112233345678899999998766654 468999999999
Q ss_pred HHHHHHh------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-HCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEe
Q 008534 305 CIGNEII------INPSLLFLDEPTSGLDSTTALRIVQMLQDIA-EAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (562)
Q Consensus 305 ~IAraLl------~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~-~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~ 377 (562)
+|||||+ .+|++|||||||+|||+.++..+.+.|++++ +.|+|||++||++. .+..+||+|++|++|++++.
T Consensus 144 ~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~ 222 (258)
T PRK13548 144 QLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLN-LAARYADRIVLLHQGRLVAD 222 (258)
T ss_pred HHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhcCEEEEEECCEEEee
Confidence 9999999 5999999999999999999999999999997 56899999999975 46679999999999999999
Q ss_pred cChHHHH
Q 008534 378 GKASEAM 384 (562)
Q Consensus 378 G~~~el~ 384 (562)
|+++++.
T Consensus 223 ~~~~~~~ 229 (258)
T PRK13548 223 GTPAEVL 229 (258)
T ss_pred CCHHHHh
Confidence 9988764
|
|
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-44 Score=383.61 Aligned_cols=203 Identities=26% Similarity=0.454 Sum_probs=177.7
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh----h----ccCcEEEEccCCCCCC
Q 008534 171 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----S----LKSKIGFVTQDDVLFP 242 (562)
Q Consensus 171 ~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~----~----~~~~igyV~Q~~~l~~ 242 (562)
.+|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++.. . .++.++||+|++.+|+
T Consensus 42 ~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~--p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~ 119 (400)
T PRK10070 42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIE--PTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMP 119 (400)
T ss_pred EEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCC--CCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCC
Confidence 48999999999999999999999999999999999543 568999999998742 1 1357999999999999
Q ss_pred CCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEeCC
Q 008534 243 HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEP 322 (562)
Q Consensus 243 ~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEP 322 (562)
++||+||+.|+...+ .....+..+++.++++.+||.+..++. +++|||||||||+|||||+.+|+|||||||
T Consensus 120 ~~Tv~enl~~~~~~~---~~~~~~~~~~~~e~L~~~gL~~~~~~~-----~~~LSgGq~QRv~LArAL~~~P~iLLLDEP 191 (400)
T PRK10070 120 HMTVLDNTAFGMELA---GINAEERREKALDALRQVGLENYAHSY-----PDELSGGMRQRVGLARALAINPDILLMDEA 191 (400)
T ss_pred CCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCChhhhcC-----cccCCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 999999999976543 223445556788999999998766654 578999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHH-CCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHH
Q 008534 323 TSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (562)
Q Consensus 323 TsgLD~~~~~~i~~~L~~l~~-~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~ 384 (562)
|+|||+.++..+.+.|+++.+ .|+|||++||++. ++.++||+|++|++|++++.|+++++.
T Consensus 192 ts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~-~~~~~~Dri~vL~~G~i~~~g~~~~l~ 253 (400)
T PRK10070 192 FSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLD-EAMRIGDRIAIMQNGEVVQVGTPDEIL 253 (400)
T ss_pred CccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHH-HHHHhCCEEEEEECCEEEecCCHHHHH
Confidence 999999999999999999975 4899999999975 467899999999999999999998874
|
|
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-44 Score=361.87 Aligned_cols=220 Identities=23% Similarity=0.371 Sum_probs=185.0
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
.|+++||++.| +++++|+|+||+|++|++++|+||||||||||+++|+|... +.+|+|.++|.++..
T Consensus 5 ~l~~~~l~~~~--------~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~ 74 (255)
T PRK11300 5 LLSVSGLMMRF--------GGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYK--PTGGTILLRGQHIEGLPG 74 (255)
T ss_pred eEEEeeEEEEE--------CCEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcC--CCcceEEECCEECCCCCH
Confidence 69999999998 24579999999999999999999999999999999999543 568999999998742
Q ss_pred -h-ccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCC----------CCc--cHHHHHHHHHHHHHHcCCCccccccccCc
Q 008534 226 -S-LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLP----------NTL--TKQQKEKRAIDVINELGLERCQDTMIGGS 291 (562)
Q Consensus 226 -~-~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~----------~~~--~~~~~~~~v~~~l~~lgL~~~~~t~vg~~ 291 (562)
. .+..++|++|++.+|+.+||+||+.++...... ... ...+...++.++++.+||.+..++.
T Consensus 75 ~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~---- 150 (255)
T PRK11300 75 HQIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQ---- 150 (255)
T ss_pred HHHHhcCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCC----
Confidence 1 234589999999999999999999986431100 000 1112335677889999997665554
Q ss_pred ccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEc
Q 008534 292 FVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLG 370 (562)
Q Consensus 292 ~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~ 370 (562)
+..|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. .+.+.||++++|+
T Consensus 151 -~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~ 228 (255)
T PRK11300 151 -AGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMK-LVMGISDRIYVVN 228 (255)
T ss_pred -hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHH-HHHHhCCEEEEEE
Confidence 5689999999999999999999999999999999999999999999999775 899999999975 4678899999999
Q ss_pred CCeEEEecChHHHH
Q 008534 371 KGSLLYFGKASEAM 384 (562)
Q Consensus 371 ~G~iv~~G~~~el~ 384 (562)
+|++++.|+++++.
T Consensus 229 ~g~i~~~~~~~~~~ 242 (255)
T PRK11300 229 QGTPLANGTPEEIR 242 (255)
T ss_pred CCeEEecCCHHHHh
Confidence 99999999988763
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-44 Score=355.11 Aligned_cols=210 Identities=30% Similarity=0.535 Sum_probs=175.9
Q ss_pred EEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh----
Q 008534 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (562)
Q Consensus 150 l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~---- 225 (562)
|+++||++.|.. ....+++|+|+||+|++|++++|+||||||||||+++|+|.+. +.+|+|.++|.++..
T Consensus 2 l~~~~v~~~~~~----~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~ 75 (221)
T TIGR02211 2 LKCENLGKRYQE----GKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDN--PTSGEVLFNGQSLSKLSSN 75 (221)
T ss_pred EEEEeeeEEccC----CCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEhhhcCHh
Confidence 789999999821 1112579999999999999999999999999999999999643 568999999998742
Q ss_pred h---cc-CcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHH
Q 008534 226 S---LK-SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGER 301 (562)
Q Consensus 226 ~---~~-~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqr 301 (562)
. ++ +.++||+|++.+++.+||+||+.+....+ .....+..+++.++++.+||.+..++. +..||||||
T Consensus 76 ~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~ 147 (221)
T TIGR02211 76 ERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIG---KKSVKEAKERAYEMLEKVGLEHRINHR-----PSELSGGER 147 (221)
T ss_pred HHHHHHHhcEEEEecccccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCC-----hhhCCHHHH
Confidence 1 23 57999999999998899999999865432 122333455678899999998666553 468999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEE
Q 008534 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLL 375 (562)
Q Consensus 302 qRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv 375 (562)
|||+|||||+.+|+||||||||+|||+.++..+.+.|++++++ |+|||++||++.. + ..||+|++|++|+++
T Consensus 148 qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~-~-~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 148 QRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLEL-A-KKLDRVLEMKDGQLF 220 (221)
T ss_pred HHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-H-hhcCEEEEEeCCEec
Confidence 9999999999999999999999999999999999999999764 8999999999763 4 558999999999985
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-44 Score=365.11 Aligned_cols=217 Identities=30% Similarity=0.544 Sum_probs=185.5
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
+|+++||+++|. ..+.+|+||||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++..
T Consensus 1 ~l~~~~l~~~~~-------~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~~~~~~ 71 (275)
T PRK13639 1 ILETRDLKYSYP-------DGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILK--PTSGEVLIKGEPIKYDKK 71 (275)
T ss_pred CEEEEEEEEEeC-------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCccEEEECCEECccccc
Confidence 378999999982 13469999999999999999999999999999999999653 568999999998731
Q ss_pred ---hccCcEEEEccCC--CCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhH
Q 008534 226 ---SLKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGE 300 (562)
Q Consensus 226 ---~~~~~igyV~Q~~--~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGq 300 (562)
.+++.|+|++|++ .+++ +||.||+.++.... .....+..+++.++++.++|.+..++. +.+|||||
T Consensus 72 ~~~~~~~~i~~v~q~~~~~~~~-~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~-----~~~LS~Gq 142 (275)
T PRK13639 72 SLLEVRKTVGIVFQNPDDQLFA-PTVEEDVAFGPLNL---GLSKEEVEKRVKEALKAVGMEGFENKP-----PHHLSGGQ 142 (275)
T ss_pred hHHHHHhheEEEeeChhhhhcc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchhhcCC-----hhhCCHHH
Confidence 2467899999997 3554 79999998864321 223444556788899999998766654 46899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecCh
Q 008534 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 380 (562)
Q Consensus 301 rqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~ 380 (562)
|||++|||||+.+|++|||||||+|||+.++..+.+.|++++++|.|||++||++. .+.++||++++|++|++++.|++
T Consensus 143 ~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~-~~~~~~d~i~~l~~G~i~~~g~~ 221 (275)
T PRK13639 143 KKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVD-LVPVYADKVYVMSDGKIIKEGTP 221 (275)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEeCCH
Confidence 99999999999999999999999999999999999999999877999999999975 46678999999999999999999
Q ss_pred HHHH
Q 008534 381 SEAM 384 (562)
Q Consensus 381 ~el~ 384 (562)
+++.
T Consensus 222 ~~~~ 225 (275)
T PRK13639 222 KEVF 225 (275)
T ss_pred HHHh
Confidence 9875
|
|
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-44 Score=353.93 Aligned_cols=202 Identities=29% Similarity=0.502 Sum_probs=171.5
Q ss_pred EEEeEEEEEeecccCCccc-cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh-hcc
Q 008534 151 KFTDVTYKVILKGMTSSEE-KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-SLK 228 (562)
Q Consensus 151 ~~~nvs~~y~~~~~~~~~~-~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~-~~~ 228 (562)
+++||+++|. + +.+|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.++.. ..+
T Consensus 1 ~~~~l~~~~~--------~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~ 70 (205)
T cd03226 1 RIENISFSYK--------KGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIK--ESSGSILLNGKPIKAKERR 70 (205)
T ss_pred CcccEEEEeC--------CcCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEhhhHHhh
Confidence 3688999882 2 579999999999999999999999999999999999543 568999999998753 345
Q ss_pred CcEEEEccCCC-CCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHH
Q 008534 229 SKIGFVTQDDV-LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (562)
Q Consensus 229 ~~igyV~Q~~~-l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA 307 (562)
+.++|++|++. .+..+||+||+.++.... . ....++.++++.++|.+..++. +..||||||||++||
T Consensus 71 ~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~---~----~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~la 138 (205)
T cd03226 71 KSIGYVMQDVDYQLFTDSVREELLLGLKEL---D----AGNEQAETVLKDLDLYALKERH-----PLSLSGGQKQRLAIA 138 (205)
T ss_pred cceEEEecChhhhhhhccHHHHHhhhhhhc---C----ccHHHHHHHHHHcCCchhcCCC-----chhCCHHHHHHHHHH
Confidence 67999999974 233579999998864321 1 1124678899999998766654 468999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEE
Q 008534 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLL 375 (562)
Q Consensus 308 raLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv 375 (562)
|||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++.. +..+||++++|++|+++
T Consensus 139 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~-~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 139 AALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEF-LAKVCDRVLLLANGAIV 205 (205)
T ss_pred HHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH-HHHhCCEEEEEECCEEC
Confidence 99999999999999999999999999999999997779999999999764 66789999999999975
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-44 Score=365.51 Aligned_cols=221 Identities=25% Similarity=0.423 Sum_probs=183.7
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
.|+++||+++|... ....+++|+|+||+|++|++++|+||||||||||+++|+|.+. +.+|+|.++|.++..
T Consensus 2 ~l~~~~l~~~~~~~---~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~i~~~~~ 76 (280)
T PRK13649 2 GINLQNVSYTYQAG---TPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHV--PTQGSVRVDDTLITSTSK 76 (280)
T ss_pred eEEEEEEEEEcCCC---CccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcccccc
Confidence 48899999998210 0012469999999999999999999999999999999999543 568999999998642
Q ss_pred -----hccCcEEEEccCC--CCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCc-cccccccCcccCCCC
Q 008534 226 -----SLKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVRGVS 297 (562)
Q Consensus 226 -----~~~~~igyV~Q~~--~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~t~vg~~~~~~LS 297 (562)
.+++.|+|++|++ .+++ .||+||+.+..... ....++..+++.++++.++|.+ ..+. .+.+||
T Consensus 77 ~~~~~~~~~~i~~~~q~~~~~~~~-~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~~LS 147 (280)
T PRK13649 77 NKDIKQIRKKVGLVFQFPESQLFE-ETVLKDVAFGPQNF---GVSQEEAEALAREKLALVGISESLFEK-----NPFELS 147 (280)
T ss_pred ccCHHHHHhheEEEeeChhhhhcc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhC-----CcccCC
Confidence 2456799999997 4665 69999999865332 1233444556788999999963 3444 356899
Q ss_pred hhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEe
Q 008534 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (562)
Q Consensus 298 GGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~ 377 (562)
|||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+..+||++++|++|++++.
T Consensus 148 gG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~~ 226 (280)
T PRK13649 148 GGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMD-DVANYADFVYVLEKGKLVLS 226 (280)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH-HHHHhCCEEEEEECCEEEEe
Confidence 99999999999999999999999999999999999999999999877899999999975 46678999999999999999
Q ss_pred cChHHHH
Q 008534 378 GKASEAM 384 (562)
Q Consensus 378 G~~~el~ 384 (562)
|+++++.
T Consensus 227 g~~~~~~ 233 (280)
T PRK13649 227 GKPKDIF 233 (280)
T ss_pred CCHHHHh
Confidence 9998874
|
|
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-44 Score=373.55 Aligned_cols=227 Identities=26% Similarity=0.431 Sum_probs=190.2
Q ss_pred eEEEEeEEEEEeeccc--CCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh-
Q 008534 149 YLKFTDVTYKVILKGM--TSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~--~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~- 225 (562)
.|+++||++.|..+.. .......+|+||||+|++||+++|+|+||||||||+++|+|.+. +.+|+|.++|.++..
T Consensus 5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~--p~~G~i~~~g~~l~~~ 82 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIET--PTGGELYYQGQDLLKA 82 (327)
T ss_pred eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCC--CCCcEEEECCEEcCcC
Confidence 6999999999842110 00113579999999999999999999999999999999999653 468999999998742
Q ss_pred ------hccCcEEEEccCC--CCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCc-cccccccCcccCCC
Q 008534 226 ------SLKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVRGV 296 (562)
Q Consensus 226 ------~~~~~igyV~Q~~--~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~t~vg~~~~~~L 296 (562)
.+++.|+||+|++ .++|.+||.+++.+...... ...+.+..+++.++++.+||.+ ..++ ++++|
T Consensus 83 ~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~p~~L 155 (327)
T PRK11308 83 DPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINT--SLSAAERREKALAMMAKVGLRPEHYDR-----YPHMF 155 (327)
T ss_pred CHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHCCCChHHhcC-----CCccC
Confidence 2467899999998 58899999999987654321 2345556678899999999963 3443 56899
Q ss_pred ChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEE
Q 008534 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLL 375 (562)
Q Consensus 297 SGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv 375 (562)
||||||||+|||||+.+|+|||+||||++||+.++.+|++.|+++.++ |.|||+|||++. .+.++||+|++|++|+++
T Consensus 156 SgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~adrv~vm~~G~iv 234 (327)
T PRK11308 156 SGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLS-VVEHIADEVMVMYLGRCV 234 (327)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999764 899999999976 466789999999999999
Q ss_pred EecChHHHHH
Q 008534 376 YFGKASEAMA 385 (562)
Q Consensus 376 ~~G~~~el~~ 385 (562)
+.|+.+++..
T Consensus 235 e~g~~~~~~~ 244 (327)
T PRK11308 235 EKGTKEQIFN 244 (327)
T ss_pred EECCHHHHhc
Confidence 9999988753
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-44 Score=359.46 Aligned_cols=222 Identities=22% Similarity=0.401 Sum_probs=184.0
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC--CCC-CCccEEEECCEeCCh
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRL--MEP-TVGGSITYNDHPYSK 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l--~~~-~~~G~I~i~G~~~~~ 225 (562)
+|+++|+++.| +.+.+|+|+||+|++||+++|+||||||||||+++|+|.. ..+ +.+|+|.++|.++..
T Consensus 3 ~l~~~~~~~~~--------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~ 74 (250)
T PRK14245 3 KIDARDVNFWY--------GDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYD 74 (250)
T ss_pred EEEEEEEEEEE--------CCEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEeccc
Confidence 68999999998 2456999999999999999999999999999999999852 222 248999999998742
Q ss_pred ------hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChh
Q 008534 226 ------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (562)
Q Consensus 226 ------~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGG 299 (562)
.+++.|+||+|++.+|+ .|++||+.++...+. .......++.+.++++.++|.+...... +..+..||||
T Consensus 75 ~~~~~~~~~~~i~~v~q~~~~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G 150 (250)
T PRK14245 75 KGVQVDELRKNVGMVFQRPNPFP-KSIFENVAYGLRVNG--VKDNAFIRQRVEETLKGAALWDEVKDKL-KESAFALSGG 150 (250)
T ss_pred ccccHHHHhhheEEEecCCccCc-ccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCCcchhhhh-hCCcccCCHH
Confidence 34567999999999987 699999998754321 1112334456788899999864322211 2345789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecC
Q 008534 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (562)
Q Consensus 300 qrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (562)
||||++|||||+.+|+||||||||+|||+.++..+.+.|+++. +++|||++||++.. +.+.||++++|++|++++.|+
T Consensus 151 ~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiivtH~~~~-~~~~~d~v~~l~~G~~~~~~~ 228 (250)
T PRK14245 151 QQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELK-KDYTIVIVTHNMQQ-AARVSDKTAFFYMGEMVEYDD 228 (250)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHHH-HHhhCCEEEEEECCEEEEECC
Confidence 9999999999999999999999999999999999999999995 47999999999764 678899999999999999999
Q ss_pred hHHHH
Q 008534 380 ASEAM 384 (562)
Q Consensus 380 ~~el~ 384 (562)
++++.
T Consensus 229 ~~~~~ 233 (250)
T PRK14245 229 TKKIF 233 (250)
T ss_pred HHHHh
Confidence 98874
|
|
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-45 Score=392.48 Aligned_cols=216 Identities=32% Similarity=0.536 Sum_probs=184.1
Q ss_pred ceeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCC--
Q 008534 147 PIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS-- 224 (562)
Q Consensus 147 ~~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~-- 224 (562)
+..++.+|++|.|+ +++++++|+||++++|+.+||+|+||||||||+++|+|... +++|+|.+||.+..
T Consensus 318 ~~ei~~~~l~~~y~-------~g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~--~~~G~I~vng~~l~~l 388 (559)
T COG4988 318 PIEISLENLSFRYP-------DGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLA--PTQGEIRVNGIDLRDL 388 (559)
T ss_pred CceeeecceEEecC-------CCCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCC--CCCceEEECCcccccc
Confidence 44566779999983 23489999999999999999999999999999999999653 46899999999875
Q ss_pred --hhccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCC------CccccccccCcccCCC
Q 008534 225 --KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL------ERCQDTMIGGSFVRGV 296 (562)
Q Consensus 225 --~~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL------~~~~~t~vg~~~~~~L 296 (562)
..+|++++||+|+|.+|+. |++|||.++.. ..++++ +.++++..+| ++..|+.+|+. .++|
T Consensus 389 ~~~~~~k~i~~v~Q~p~lf~g-TireNi~l~~~-----~~s~e~----i~~al~~a~l~~~v~~p~GLdt~ige~-G~~L 457 (559)
T COG4988 389 SPEAWRKQISWVSQNPYLFAG-TIRENILLARP-----DASDEE----IIAALDQAGLLEFVPKPDGLDTVIGEG-GAGL 457 (559)
T ss_pred CHHHHHhHeeeeCCCCccccc-cHHHHhhccCC-----cCCHHH----HHHHHHHhcHHHhhcCCCcccchhccC-CCCC
Confidence 3689999999999999985 99999998742 123333 3334443333 56778888865 5679
Q ss_pred ChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEE
Q 008534 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (562)
Q Consensus 297 SGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~ 376 (562)
||||+|||++||||+.+++++||||||++||.++++.|++.|.++++ ++|+|++||++.. ...+|+|++|++|++++
T Consensus 458 SgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~-~ktvl~itHrl~~--~~~~D~I~vld~G~l~~ 534 (559)
T COG4988 458 SGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAK-QKTVLVITHRLED--AADADRIVVLDNGRLVE 534 (559)
T ss_pred CHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHh-CCeEEEEEcChHH--HhcCCEEEEecCCceec
Confidence 99999999999999999999999999999999999999999999986 5999999999864 57799999999999999
Q ss_pred ecChHHHHH
Q 008534 377 FGKASEAMA 385 (562)
Q Consensus 377 ~G~~~el~~ 385 (562)
.|+|+++.+
T Consensus 535 ~g~~~~L~~ 543 (559)
T COG4988 535 QGTHEELSE 543 (559)
T ss_pred cCCHHHHhh
Confidence 999999864
|
|
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-44 Score=365.56 Aligned_cols=218 Identities=30% Similarity=0.525 Sum_probs=186.7
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
.++++||+++|. ..+.+|+||||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++..
T Consensus 3 ~l~~~~l~~~~~-------~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~ 73 (277)
T PRK13652 3 LIETRDLCYSYS-------GSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILK--PTSGSVLIRGEPITKENI 73 (277)
T ss_pred eEEEEEEEEEeC-------CCCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEECCcCCH
Confidence 589999999982 13469999999999999999999999999999999999543 568999999998742
Q ss_pred -hccCcEEEEccCCC--CCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHH
Q 008534 226 -SLKSKIGFVTQDDV--LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (562)
Q Consensus 226 -~~~~~igyV~Q~~~--l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrq 302 (562)
.+++.++||+|++. ++ ..||.||+.++.... ....+...+++.++++.++|.+..++. ++.|||||||
T Consensus 74 ~~~~~~i~~v~q~~~~~~~-~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~Gq~q 144 (277)
T PRK13652 74 REVRKFVGLVFQNPDDQIF-SPTVEQDIAFGPINL---GLDEETVAHRVSSALHMLGLEELRDRV-----PHHLSGGEKK 144 (277)
T ss_pred HHHHhheEEEecCcccccc-cccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhHhcCC-----cccCCHHHHH
Confidence 34677999999974 45 579999998865422 234444556788999999998766654 4689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChH
Q 008534 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKAS 381 (562)
Q Consensus 303 Rv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~ 381 (562)
|++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||++. .+.+.||+|++|++|++++.|+++
T Consensus 145 rl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~-~~~~~~drv~~l~~G~i~~~g~~~ 223 (277)
T PRK13652 145 RVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLD-LVPEMADYIYVMDKGRIVAYGTVE 223 (277)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEECCeEEEECCHH
Confidence 999999999999999999999999999999999999999875 899999999976 467899999999999999999999
Q ss_pred HHHH
Q 008534 382 EAMA 385 (562)
Q Consensus 382 el~~ 385 (562)
++.+
T Consensus 224 ~~~~ 227 (277)
T PRK13652 224 EIFL 227 (277)
T ss_pred HHhc
Confidence 8753
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-44 Score=363.73 Aligned_cols=208 Identities=25% Similarity=0.422 Sum_probs=180.4
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhc
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~ 227 (562)
..|+++||+++| +++.+|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++. .+
T Consensus 11 ~~l~i~~l~~~~--------~~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~--p~~G~i~~~g~~~~-~~ 79 (257)
T PRK11247 11 TPLLLNAVSKRY--------GERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLET--PSAGELLAGTAPLA-EA 79 (257)
T ss_pred CcEEEEEEEEEE--------CCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEHH-Hh
Confidence 369999999998 24579999999999999999999999999999999999643 56899999998764 35
Q ss_pred cCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHH
Q 008534 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (562)
Q Consensus 228 ~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA 307 (562)
++.++|++|++.+|+.+||+||+.++.. . ....++.++++.++|.+..+.. +..|||||||||+||
T Consensus 80 ~~~i~~v~q~~~l~~~~tv~enl~~~~~-----~----~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgGqkqrl~la 145 (257)
T PRK11247 80 REDTRLMFQDARLLPWKKVIDNVGLGLK-----G----QWRDAALQALAAVGLADRANEW-----PAALSGGQKQRVALA 145 (257)
T ss_pred hCceEEEecCccCCCCCcHHHHHHhccc-----c----hHHHHHHHHHHHcCChhHhcCC-----hhhCCHHHHHHHHHH
Confidence 6789999999999998999999987521 0 1234677899999998765553 568999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChH
Q 008534 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKAS 381 (562)
Q Consensus 308 raLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~ 381 (562)
|||+.+|++|||||||+|||+.++..+.+.|+++.+ .|+|||++||++. .+..+||+|++|++|++++.|+.+
T Consensus 146 raL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~-~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 146 RALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVS-EAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEeecccc
Confidence 999999999999999999999999999999999865 4899999999976 466889999999999999988653
|
|
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-44 Score=362.35 Aligned_cols=218 Identities=24% Similarity=0.433 Sum_probs=185.4
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
.|+++|+++.|. ...+.+|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++..
T Consensus 7 ~l~i~~l~~~~~------~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~~~~~~ 78 (269)
T PRK13648 7 IIVFKNVSFQYQ------SDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEK--VKSGEIFYNNQAITDDNF 78 (269)
T ss_pred eEEEEEEEEEcC------CCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEECCcCCH
Confidence 699999999982 122469999999999999999999999999999999999643 568999999998742
Q ss_pred -hccCcEEEEccCCC-CCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHH
Q 008534 226 -SLKSKIGFVTQDDV-LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (562)
Q Consensus 226 -~~~~~igyV~Q~~~-l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqR 303 (562)
.+++.++||+|++. +|+..|+.+|+.+..... ........+++.++++.+++.+..++. +..||||||||
T Consensus 79 ~~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qr 150 (269)
T PRK13648 79 EKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENH---AVPYDEMHRRVSEALKQVDMLERADYE-----PNALSGGQKQR 150 (269)
T ss_pred HHHHhheeEEEeChHHhcccccHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCchhhhCC-----cccCCHHHHHH
Confidence 35678999999984 677789999998875332 123344455678899999998766653 56899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHH
Q 008534 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (562)
Q Consensus 304 v~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~e 382 (562)
++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++.. +. .||+|++|++|++++.|++++
T Consensus 151 l~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~-~~-~~d~i~~l~~G~i~~~g~~~~ 228 (269)
T PRK13648 151 VAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSE-AM-EADHVIVMNKGTVYKEGTPTE 228 (269)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchH-Hh-cCCEEEEEECCEEEEecCHHH
Confidence 99999999999999999999999999999999999999764 8999999999864 54 499999999999999999988
Q ss_pred HH
Q 008534 383 AM 384 (562)
Q Consensus 383 l~ 384 (562)
+.
T Consensus 229 ~~ 230 (269)
T PRK13648 229 IF 230 (269)
T ss_pred Hh
Confidence 64
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-44 Score=365.38 Aligned_cols=223 Identities=23% Similarity=0.411 Sum_probs=187.2
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh--
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~-- 225 (562)
.+|+++||+++|.... +...+++|+||||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++..
T Consensus 3 ~~l~~~~l~~~~~~~~--~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~i~g~~i~~~~ 78 (280)
T PRK13633 3 EMIKCKNVSYKYESNE--ESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLI--PSEGKVYVDGLDTSDEE 78 (280)
T ss_pred ceEEEeeeEEEcCCCC--CCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEeccccc
Confidence 3699999999983110 0013579999999999999999999999999999999999653 568999999998742
Q ss_pred ---hccCcEEEEccCCC--CCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhH
Q 008534 226 ---SLKSKIGFVTQDDV--LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGE 300 (562)
Q Consensus 226 ---~~~~~igyV~Q~~~--l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGq 300 (562)
..++.+|||+|++. +++ .||.||+.|+.... .....+..+++.++++.+||.+..++. +..|||||
T Consensus 79 ~~~~~~~~i~~v~q~~~~~~~~-~~v~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~LS~G~ 149 (280)
T PRK13633 79 NLWDIRNKAGMVFQNPDNQIVA-TIVEEDVAFGPENL---GIPPEEIRERVDESLKKVGMYEYRRHA-----PHLLSGGQ 149 (280)
T ss_pred cHHHHhhheEEEecChhhhhcc-ccHHHHHHhhHhhc---CCCHHHHHHHHHHHHHHCCCHhHhhCC-----cccCCHHH
Confidence 34678999999974 454 69999999875432 233445566788999999998776664 46899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecC
Q 008534 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (562)
Q Consensus 301 rqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (562)
||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||++.. +. .||++++|++|++++.|+
T Consensus 150 ~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~-~~-~~d~v~~l~~G~i~~~g~ 227 (280)
T PRK13633 150 KQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEE-AV-EADRIIVMDSGKVVMEGT 227 (280)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHH-Hh-cCCEEEEEECCEEEEecC
Confidence 99999999999999999999999999999999999999999764 9999999999875 44 499999999999999999
Q ss_pred hHHHHH
Q 008534 380 ASEAMA 385 (562)
Q Consensus 380 ~~el~~ 385 (562)
++++..
T Consensus 228 ~~~~~~ 233 (280)
T PRK13633 228 PKEIFK 233 (280)
T ss_pred HHHHhc
Confidence 998753
|
|
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-44 Score=361.41 Aligned_cols=224 Identities=25% Similarity=0.416 Sum_probs=185.6
Q ss_pred ceeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC-C--CCccEEEECCEeC
Q 008534 147 PIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-P--TVGGSITYNDHPY 223 (562)
Q Consensus 147 ~~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~-~--~~~G~I~i~G~~~ 223 (562)
...|+++||++.|. ++++|+|+||+|++||+++|+||||||||||+++|+|.+.. | +.+|+|.++|.++
T Consensus 11 ~~~l~~~~l~~~~~--------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~ 82 (260)
T PRK10744 11 PSKIQVRNLNFYYG--------KFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENI 82 (260)
T ss_pred CceEEEEEEEEEeC--------CeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEc
Confidence 45799999999982 34699999999999999999999999999999999996531 2 3689999999987
Q ss_pred Ch------hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCC
Q 008534 224 SK------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVS 297 (562)
Q Consensus 224 ~~------~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LS 297 (562)
.. .+++.|+|++|++.+|+ +||+||+.++..... ..+.....+++.++++.+++.+...... +..+.+||
T Consensus 83 ~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS 158 (260)
T PRK10744 83 LTPKQDIALLRAKVGMVFQKPTPFP-MSIYDNIAFGVRLFE--KLSRAEMDERVEWALTKAALWNEVKDKL-HQSGYSLS 158 (260)
T ss_pred cccccchHHHhcceEEEecCCccCc-CcHHHHHhhhHhhcC--CCCHHHHHHHHHHHHHHcCCChhhHHHH-hcCCCCCC
Confidence 31 34678999999999987 799999998753221 1234444567888999998853211111 23457899
Q ss_pred hhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEe
Q 008534 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (562)
Q Consensus 298 GGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~ 377 (562)
||||||++|||||+.+|+||||||||+|||+.++..+.+.|+++.+ +.|||++||++. .+..+||++++|++|++++.
T Consensus 159 ~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~ 236 (260)
T PRK10744 159 GGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQ-DYTVVIVTHNMQ-QAARCSDYTAFMYLGELIEF 236 (260)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999999964 789999999975 46678999999999999999
Q ss_pred cChHHHH
Q 008534 378 GKASEAM 384 (562)
Q Consensus 378 G~~~el~ 384 (562)
|+++++.
T Consensus 237 g~~~~~~ 243 (260)
T PRK10744 237 GNTDTIF 243 (260)
T ss_pred CCHHHHH
Confidence 9988764
|
|
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-44 Score=362.88 Aligned_cols=221 Identities=27% Similarity=0.480 Sum_probs=185.5
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC--CccEEEECCEeCCh
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPT--VGGSITYNDHPYSK 225 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~--~~G~I~i~G~~~~~ 225 (562)
+.|+++||++.| +++.+|+|+||+|++||+++|+||||||||||+++|+|... |. .+|+|.++|.++..
T Consensus 3 ~~l~~~nl~~~~--------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~-p~~~~~G~i~~~g~~~~~ 73 (262)
T PRK09984 3 TIIRVEKLAKTF--------NQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLIT-GDKSAGSHIELLGRTVQR 73 (262)
T ss_pred cEEEEeeEEEEe--------CCeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCC-CCCCCceEEEECCEeccc
Confidence 369999999998 24579999999999999999999999999999999999653 32 36999999987632
Q ss_pred ---------hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCC-----CccHHHHHHHHHHHHHHcCCCccccccccCc
Q 008534 226 ---------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPN-----TLTKQQKEKRAIDVINELGLERCQDTMIGGS 291 (562)
Q Consensus 226 ---------~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~-----~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~ 291 (562)
.+++.++|++|++.+|+.+||+||+.++.....+. .......+.++.++++.+||.+..+..
T Consensus 74 ~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---- 149 (262)
T PRK09984 74 EGRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQR---- 149 (262)
T ss_pred ccccchhHHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCC----
Confidence 23567999999999999899999998764211000 011223455788999999998666654
Q ss_pred ccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEc
Q 008534 292 FVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLG 370 (562)
Q Consensus 292 ~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~ 370 (562)
+..|||||||||+|||||+.+|+||||||||+|||+.++..+.+.|++++++ |+|||++||++.. +...||+|++|+
T Consensus 150 -~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~-~~~~~d~i~~l~ 227 (262)
T PRK09984 150 -VSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDY-ALRYCERIVALR 227 (262)
T ss_pred -ccccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhCCEEEEEE
Confidence 4689999999999999999999999999999999999999999999999754 8999999999753 678899999999
Q ss_pred CCeEEEecChHHH
Q 008534 371 KGSLLYFGKASEA 383 (562)
Q Consensus 371 ~G~iv~~G~~~el 383 (562)
+|++++.|+++++
T Consensus 228 ~g~i~~~g~~~~~ 240 (262)
T PRK09984 228 QGHVFYDGSSQQF 240 (262)
T ss_pred CCEEEEeCCHHHh
Confidence 9999999998764
|
|
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-44 Score=373.79 Aligned_cols=229 Identities=21% Similarity=0.311 Sum_probs=186.4
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--CCccEEEECCEeCCh-
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP--TVGGSITYNDHPYSK- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~--~~~G~I~i~G~~~~~- 225 (562)
.|+++||+++|..+ .+...+|+||||+|++||+++|+|+||||||||+++|+|.+..+ +.+|+|.++|+++..
T Consensus 3 ~L~v~~l~~~y~~~----~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~ 78 (330)
T PRK15093 3 LLDIRNLTIEFKTS----DGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRL 78 (330)
T ss_pred eEEEeeeEEEEeCC----CCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcC
Confidence 58999999998421 12457999999999999999999999999999999999965421 368999999998742
Q ss_pred ---h----ccCcEEEEccCCC--CCCCCCHHHHHHHHHhhCCCCC---ccHHHHHHHHHHHHHHcCCCccccccccCccc
Q 008534 226 ---S----LKSKIGFVTQDDV--LFPHLTVKETLTYAALLRLPNT---LTKQQKEKRAIDVINELGLERCQDTMIGGSFV 293 (562)
Q Consensus 226 ---~----~~~~igyV~Q~~~--l~~~lTV~enl~~~~~~~~~~~---~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~ 293 (562)
. .++.|+||||++. ++|.+||.+++.+......... ....+..+++.++++.+||.+..+ ..+.++
T Consensus 79 ~~~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~--~~~~~p 156 (330)
T PRK15093 79 SPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKD--AMRSFP 156 (330)
T ss_pred CHHHHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHH--HHhCCc
Confidence 1 1357999999985 6788999999986432110000 011234567889999999975321 123456
Q ss_pred CCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCC
Q 008534 294 RGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKG 372 (562)
Q Consensus 294 ~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G 372 (562)
.+|||||||||+|||||+.+|+||||||||+|||+.++.++++.|+++.++ |.|||+|||++. .+.++||+|++|++|
T Consensus 157 ~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~-~v~~~~dri~vm~~G 235 (330)
T PRK15093 157 YELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQ-MLSQWADKINVLYCG 235 (330)
T ss_pred hhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEECC
Confidence 899999999999999999999999999999999999999999999999874 899999999975 466889999999999
Q ss_pred eEEEecChHHHH
Q 008534 373 SLLYFGKASEAM 384 (562)
Q Consensus 373 ~iv~~G~~~el~ 384 (562)
+|++.|+++++.
T Consensus 236 ~ive~g~~~~i~ 247 (330)
T PRK15093 236 QTVETAPSKELV 247 (330)
T ss_pred EEEEECCHHHHH
Confidence 999999998874
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-44 Score=358.87 Aligned_cols=223 Identities=25% Similarity=0.412 Sum_probs=184.4
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC-CCCccEEEECCEeCCh--
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-PTVGGSITYNDHPYSK-- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~-~~~~G~I~i~G~~~~~-- 225 (562)
.++++||++.| +++.+|+|+||+|++||+++|+||||||||||+++|+|.+.. ++.+|+|.++|+++..
T Consensus 2 ~~~~~~l~~~~--------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~ 73 (246)
T PRK14269 2 IAKTTNLNLFY--------GKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQD 73 (246)
T ss_pred ceeeeeeEEEE--------CCEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCC
Confidence 47899999998 245799999999999999999999999999999999996432 2468999999998752
Q ss_pred --hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHH
Q 008534 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (562)
Q Consensus 226 --~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqR 303 (562)
..++.++|++|++.+|+ .||+||+.++...+.. ........+++.++++.++|.+...... +..+..||||||||
T Consensus 74 ~~~~~~~i~~~~q~~~l~~-~tv~eni~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G~~qr 150 (246)
T PRK14269 74 VVALRKNVGMVFQQPNVFV-KSIYENISYAPKLHGM-IKNKDEEEALVVDCLQKVGLFEEVKDKL-KQNALALSGGQQQR 150 (246)
T ss_pred HHHHhhhEEEEecCCcccc-ccHHHHhhhHHhhcCc-ccChHHHHHHHHHHHHHcCCChhhhHHh-cCCcccCCHHHHHH
Confidence 34677999999999997 6999999987533210 0012334456788999999954221111 23457899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHH
Q 008534 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (562)
Q Consensus 304 v~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el 383 (562)
|+|||||+.+|+||||||||+|||+.++..+.+.|+++.+ ++|||++||++. .+.+.||+|++|++|++++.|+++++
T Consensus 151 v~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 228 (246)
T PRK14269 151 LCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSH-NLSMIMVTHNMQ-QGKRVADYTAFFHLGELIEFGESKEF 228 (246)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH-HHHhhCcEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999999999865 899999999975 46788999999999999999998886
Q ss_pred H
Q 008534 384 M 384 (562)
Q Consensus 384 ~ 384 (562)
.
T Consensus 229 ~ 229 (246)
T PRK14269 229 F 229 (246)
T ss_pred H
Confidence 4
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-44 Score=352.98 Aligned_cols=206 Identities=30% Similarity=0.539 Sum_probs=172.5
Q ss_pred EEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh----h
Q 008534 151 KFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----S 226 (562)
Q Consensus 151 ~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~----~ 226 (562)
+++||++.|. ...+.+|+|+||+|++|++++|+||||||||||+++|+|.+. +.+|+|.++|.++.. .
T Consensus 1 ~~~~l~~~~~------~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~ 72 (211)
T cd03225 1 ELKNLSFSYP------DGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLG--PTSGEVLVDGKDLTKLSLKE 72 (211)
T ss_pred CceeEEEecC------CCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEEcccCCHHH
Confidence 3688999872 112579999999999999999999999999999999999643 568999999998742 3
Q ss_pred ccCcEEEEccCCC-CCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHH
Q 008534 227 LKSKIGFVTQDDV-LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC 305 (562)
Q Consensus 227 ~~~~igyV~Q~~~-l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ 305 (562)
+++.|+|++|++. .++.+||+||+.++.... .........++.++++.++|.+..++. +..|||||||||+
T Consensus 73 ~~~~i~~~~q~~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrv~ 144 (211)
T cd03225 73 LRRKVGLVFQNPDDQFFGPTVEEEVAFGLENL---GLPEEEIEERVEEALELVGLEGLRDRS-----PFTLSGGQKQRVA 144 (211)
T ss_pred HHhhceEEecChhhhcCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCcHhhhcCC-----cccCCHHHHHHHH
Confidence 4677999999974 355689999998865332 122334455678899999997665553 4689999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCe
Q 008534 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGS 373 (562)
Q Consensus 306 IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~ 373 (562)
|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+..+||+|++|++|+
T Consensus 145 laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 145 IAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLD-LLLELADRVIVLEDGK 211 (211)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeCCC
Confidence 999999999999999999999999999999999999877999999999975 4667899999999985
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-44 Score=362.17 Aligned_cols=220 Identities=26% Similarity=0.455 Sum_probs=185.6
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
+|+++|++++| +++.+|+|+||+|++|++++|+||||||||||+++|+|.+. +.+|+|.++|.++..
T Consensus 2 ~l~~~~l~~~~--------~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~ 71 (255)
T PRK11231 2 TLRTENLTVGY--------GTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLT--PQSGTVFLGDKPISMLSS 71 (255)
T ss_pred EEEEEeEEEEE--------CCEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCCcEEEECCEEhHHCCH
Confidence 58999999998 24579999999999999999999999999999999999543 568999999998642
Q ss_pred -hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCC-CCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHH
Q 008534 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLP-NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (562)
Q Consensus 226 -~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqR 303 (562)
.+++.++|++|++.+++.+||.||+.++...... ..........++.++++.++|.+..++. +..||||||||
T Consensus 72 ~~~~~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qr 146 (255)
T PRK11231 72 RQLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRR-----LTDLSGGQRQR 146 (255)
T ss_pred HHHhhheEEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCC-----cccCCHHHHHH
Confidence 3456799999999988889999999986311000 0111123345678889999998766654 56899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHH
Q 008534 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (562)
Q Consensus 304 v~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el 383 (562)
|+|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+.+.||++++|++|++++.|+++++
T Consensus 147 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 225 (255)
T PRK11231 147 AFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLN-QASRYCDHLVVLANGHVMAQGTPEEV 225 (255)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHhcCEEEEEECCeEEEEcCHHHh
Confidence 99999999999999999999999999999999999999777899999999976 47789999999999999999998876
Q ss_pred H
Q 008534 384 M 384 (562)
Q Consensus 384 ~ 384 (562)
.
T Consensus 226 ~ 226 (255)
T PRK11231 226 M 226 (255)
T ss_pred c
Confidence 3
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-44 Score=357.48 Aligned_cols=212 Identities=25% Similarity=0.402 Sum_probs=178.5
Q ss_pred EEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh----
Q 008534 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (562)
Q Consensus 150 l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~---- 225 (562)
|+++||++.| +++++|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++..
T Consensus 1 l~~~~l~~~~--------~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~ 70 (230)
T TIGR03410 1 LEVSNLNVYY--------GQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLP--VKSGSIRLDGEDITKLPPH 70 (230)
T ss_pred CEEEeEEEEe--------CCeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEECCCCCHH
Confidence 4689999998 24579999999999999999999999999999999999543 568999999998742
Q ss_pred -hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcC-CCccccccccCcccCCCChhHHHH
Q 008534 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG-LERCQDTMIGGSFVRGVSGGERKR 303 (562)
Q Consensus 226 -~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-L~~~~~t~vg~~~~~~LSGGqrqR 303 (562)
..++.++|++|++.+|+.+|+.||+.++..... .. ..+.+.++++.++ +.+..++ .+..||||||||
T Consensus 71 ~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~---~~~~~~~~l~~~~~l~~~~~~-----~~~~LS~G~~qr 139 (230)
T TIGR03410 71 ERARAGIAYVPQGREIFPRLTVEENLLTGLAALP---RR---SRKIPDEIYELFPVLKEMLGR-----RGGDLSGGQQQQ 139 (230)
T ss_pred HHHHhCeEEeccCCcccCCCcHHHHHHHHHHhcC---cc---hHHHHHHHHHHHHhHHHHhhC-----ChhhCCHHHHHH
Confidence 135679999999999998999999998754321 11 1223456666665 4444444 456899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHH
Q 008534 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (562)
Q Consensus 304 v~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~e 382 (562)
++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. .+..+||+|++|++|++++.|++++
T Consensus 140 v~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~g~i~~~~~~~~ 218 (230)
T TIGR03410 140 LAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLD-FARELADRYYVMERGRVVASGAGDE 218 (230)
T ss_pred HHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999999999864 899999999975 4667899999999999999999887
Q ss_pred H
Q 008534 383 A 383 (562)
Q Consensus 383 l 383 (562)
+
T Consensus 219 ~ 219 (230)
T TIGR03410 219 L 219 (230)
T ss_pred c
Confidence 6
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-44 Score=363.02 Aligned_cols=226 Identities=23% Similarity=0.424 Sum_probs=185.6
Q ss_pred eEEEEeEEEEEeecc-cCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh--
Q 008534 149 YLKFTDVTYKVILKG-MTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~-~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~-- 225 (562)
+|+++||++.|...+ .....++.+|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++..
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~ 79 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEK--PAQGTVSFRGQDLYQLD 79 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEccccC
Confidence 488999999983100 000114579999999999999999999999999999999999543 568999999998742
Q ss_pred -----hccCcEEEEccCC--CCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCC-ccccccccCcccCCCC
Q 008534 226 -----SLKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVS 297 (562)
Q Consensus 226 -----~~~~~igyV~Q~~--~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~~LS 297 (562)
.+++.|+||+|++ .+++.+||+||+.+...... .........++.++++.+||. ...+. .+..||
T Consensus 80 ~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~~LS 152 (265)
T TIGR02769 80 RKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLT--SLDESEQKARIAELLDMVGLRSEDADK-----LPRQLS 152 (265)
T ss_pred HHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCChhhhhC-----ChhhCC
Confidence 1356799999997 46778999999987643211 122334456788999999995 44454 356899
Q ss_pred hhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEE
Q 008534 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (562)
Q Consensus 298 GGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~ 376 (562)
|||||||+|||||+.+|+||||||||+|||+.++..+.+.|+++.++ |+|||++||++. .+..+||++++|++|++++
T Consensus 153 gGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~ 231 (265)
T TIGR02769 153 GGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLR-LVQSFCQRVAVMDKGQIVE 231 (265)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHHhcEEEEEeCCEEEE
Confidence 99999999999999999999999999999999999999999999765 899999999975 4667899999999999999
Q ss_pred ecChHHHH
Q 008534 377 FGKASEAM 384 (562)
Q Consensus 377 ~G~~~el~ 384 (562)
.|+++++.
T Consensus 232 ~g~~~~~~ 239 (265)
T TIGR02769 232 ECDVAQLL 239 (265)
T ss_pred ECCHHHHc
Confidence 99998874
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-44 Score=364.08 Aligned_cols=219 Identities=27% Similarity=0.481 Sum_probs=186.4
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh--
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~-- 225 (562)
.+|+++|+++.|. ..++++|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.++..
T Consensus 6 ~~l~~~nl~~~~~------~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~i~~~~ 77 (271)
T PRK13632 6 VMIKVENVSFSYP------NSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLK--PQSGEIKIDGITISKEN 77 (271)
T ss_pred eEEEEEeEEEEcC------CCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEecCcCC
Confidence 3699999999872 124579999999999999999999999999999999999643 568999999998742
Q ss_pred --hccCcEEEEccCCC-CCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHH
Q 008534 226 --SLKSKIGFVTQDDV-LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (562)
Q Consensus 226 --~~~~~igyV~Q~~~-l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrq 302 (562)
.+++.++||+|++. .|+.+||+||+.++.... .....+...++.++++.++|.+..++. +..|||||||
T Consensus 78 ~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~q 149 (271)
T PRK13632 78 LKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENK---KVPPKKMKDIIDDLAKKVGMEDYLDKE-----PQNLSGGQKQ 149 (271)
T ss_pred HHHHhcceEEEEeCHHHhcCcccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCC-----cccCCHHHHH
Confidence 35678999999974 566789999999865322 123444456788899999998766654 4689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChH
Q 008534 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKAS 381 (562)
Q Consensus 303 Rv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~ 381 (562)
|++|||||+.+|+||||||||+|||+.++..+++.|++++++ ++|||++||++.. + ..||++++|++|++++.|+++
T Consensus 150 rl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~-~-~~~d~v~~l~~G~i~~~g~~~ 227 (271)
T PRK13632 150 RVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDE-A-ILADKVIVFSEGKLIAQGKPK 227 (271)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhH-H-hhCCEEEEEECCEEEEecCHH
Confidence 999999999999999999999999999999999999999765 5999999999864 4 479999999999999999988
Q ss_pred HHH
Q 008534 382 EAM 384 (562)
Q Consensus 382 el~ 384 (562)
++.
T Consensus 228 ~~~ 230 (271)
T PRK13632 228 EIL 230 (271)
T ss_pred HHh
Confidence 764
|
|
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-45 Score=353.92 Aligned_cols=220 Identities=29% Similarity=0.545 Sum_probs=204.2
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhcc
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~ 228 (562)
.|++++|+++| +++.+++|+||.++||++.+++|||||||||++++|.|.+. +++|.|.++|.+++...+
T Consensus 2 ~L~ie~vtK~F--------g~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle--~~~G~I~~~g~~~~~~~~ 71 (300)
T COG4152 2 ALEIEGVTKSF--------GDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLE--PTEGEITWNGGPLSQEIK 71 (300)
T ss_pred ceEEecchhcc--------CceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCC--ccCceEEEcCcchhhhhh
Confidence 58999999988 47889999999999999999999999999999999999654 458999999999998888
Q ss_pred CcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHH
Q 008534 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGN 308 (562)
Q Consensus 229 ~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAr 308 (562)
.+|||+|.+.-||+.+||.|.|.|.+.++ ++++++....+..+|+++++....... +.+||.|++|++.+..
T Consensus 72 ~rIGyLPEERGLy~k~tv~dql~yla~Lk---Gm~~~e~~~~~~~wLer~~i~~~~~~k-----Ik~LSKGnqQKIQfis 143 (300)
T COG4152 72 NRIGYLPEERGLYPKMTVEDQLKYLAELK---GMPKAEIQKKLQAWLERLEIVGKKTKK-----IKELSKGNQQKIQFIS 143 (300)
T ss_pred hhcccChhhhccCccCcHHHHHHHHHHhc---CCcHHHHHHHHHHHHHhccccccccch-----HHHhhhhhhHHHHHHH
Confidence 99999999999999999999999999886 577888889999999999998765544 5799999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHHHHH
Q 008534 309 EIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYF 387 (562)
Q Consensus 309 aLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~~~f 387 (562)
+++++|+++|||||+|||||.+.+.+-+.+.+++++|.|||+++|++. .+.++||++++|++|+.|.+|+.+++.+.|
T Consensus 144 aviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me-~vEeLCD~llmL~kG~~V~~G~v~~ir~~~ 221 (300)
T COG4152 144 AVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRME-HVEELCDRLLMLKKGQTVLYGTVEDIRRSF 221 (300)
T ss_pred HHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHH-HHHHHhhhhheecCCceEEeccHHHHHHhc
Confidence 999999999999999999999999999999999999999999999975 589999999999999999999999988755
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-44 Score=354.91 Aligned_cols=210 Identities=27% Similarity=0.498 Sum_probs=173.0
Q ss_pred EEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCc
Q 008534 151 KFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSK 230 (562)
Q Consensus 151 ~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~~~ 230 (562)
+++||+++| +++.+|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++. .+++.
T Consensus 1 ~~~~l~~~~--------~~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~-~~~~~ 69 (213)
T cd03235 1 EVEDLTVSY--------GGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLK--PTSGSIRVFGKPLE-KERKR 69 (213)
T ss_pred CcccceeEE--------CCEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCCEEEECCccHH-HHHhh
Confidence 367899988 23569999999999999999999999999999999999643 56899999998764 45678
Q ss_pred EEEEccCCCCC--CCCCHHHHHHHHHhhCCC-CCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHH
Q 008534 231 IGFVTQDDVLF--PHLTVKETLTYAALLRLP-NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (562)
Q Consensus 231 igyV~Q~~~l~--~~lTV~enl~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA 307 (562)
++||+|++.++ ..+||+||+.++...... .........+++.++++.+++.+..++. +..|||||||||+||
T Consensus 70 i~~v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrv~la 144 (213)
T cd03235 70 IGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQ-----IGELSGGQQQRVLLA 144 (213)
T ss_pred eEEeccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCC-----cccCCHHHHHHHHHH
Confidence 99999998763 237999999986432110 0011223345688899999997665554 468999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEec
Q 008534 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (562)
Q Consensus 308 raLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G 378 (562)
|||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+.++||++++|++| +++.|
T Consensus 145 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 145 RALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLG-LVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEcCc-EeecC
Confidence 9999999999999999999999999999999999877899999999976 467889999999876 66654
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-44 Score=349.72 Aligned_cols=216 Identities=26% Similarity=0.462 Sum_probs=184.3
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
+|+++||+..| +...+|++|||++++||+++|+|||||||||||++|+|... +.+|+|.++|++++.
T Consensus 3 mL~v~~l~~~Y--------G~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~--~~~G~I~~~G~dit~~p~ 72 (237)
T COG0410 3 MLEVENLSAGY--------GKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVR--PRSGRIIFDGEDITGLPP 72 (237)
T ss_pred ceeEEeEeecc--------cceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeeEEECCeecCCCCH
Confidence 68999999988 35689999999999999999999999999999999999653 458999999999863
Q ss_pred --hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcC-CCccccccccCcccCCCChhHHH
Q 008534 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG-LERCQDTMIGGSFVRGVSGGERK 302 (562)
Q Consensus 226 --~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-L~~~~~t~vg~~~~~~LSGGqrq 302 (562)
..+..|+||||...+||.|||+|||..++..+.. +.......+++.+.|. |.+..++. ...|||||||
T Consensus 73 ~~r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~----~~~~~~~~e~v~~lFP~Lker~~~~-----aG~LSGGEQQ 143 (237)
T COG0410 73 HERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRD----KEAQERDLEEVYELFPRLKERRNQR-----AGTLSGGEQQ 143 (237)
T ss_pred HHHHhCCeEeCcccccchhhCcHHHHHhhhhhcccc----cccccccHHHHHHHChhHHHHhcCc-----ccCCChHHHH
Confidence 3567899999999999999999999998654321 1111222566666663 45555544 3579999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChH
Q 008534 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKAS 381 (562)
Q Consensus 303 Rv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~ 381 (562)
.++|||||+.+|++|+|||||.||-|.-..+|.+.+++++++ |.||+++-++... ..+++||.+||.+|+|++.|+.+
T Consensus 144 MLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~-Al~iaDr~yvle~Griv~~G~~~ 222 (237)
T COG0410 144 MLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARF-ALEIADRGYVLENGRIVLSGTAA 222 (237)
T ss_pred HHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHH-HHHhhCEEEEEeCCEEEEecCHH
Confidence 999999999999999999999999999999999999999866 7899999998654 67899999999999999999999
Q ss_pred HHH
Q 008534 382 EAM 384 (562)
Q Consensus 382 el~ 384 (562)
++.
T Consensus 223 eL~ 225 (237)
T COG0410 223 ELL 225 (237)
T ss_pred HHh
Confidence 985
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-43 Score=364.30 Aligned_cols=220 Identities=27% Similarity=0.463 Sum_probs=186.9
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCC--ccEEEECCEeCCh-
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTV--GGSITYNDHPYSK- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~--~G~I~i~G~~~~~- 225 (562)
+|+++|+++.|. ...+++|+||||+|++||+++|+||||||||||+++|+|.+. |.. +|+|.++|.++..
T Consensus 5 ~l~i~~l~~~~~------~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~-p~~g~~G~i~i~g~~~~~~ 77 (282)
T PRK13640 5 IVEFKHVSFTYP------DSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLL-PDDNPNSKITVDGITLTAK 77 (282)
T ss_pred eEEEEEEEEEcC------CCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccC-CCCCCCcEEEECCEECCcC
Confidence 699999999982 123469999999999999999999999999999999999653 332 2999999998752
Q ss_pred ---hccCcEEEEccCCC-CCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHH
Q 008534 226 ---SLKSKIGFVTQDDV-LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGER 301 (562)
Q Consensus 226 ---~~~~~igyV~Q~~~-l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqr 301 (562)
..+++||||+|++. +++.+||+|||.|..... ..+.++..+++.++++.++|.+..++. ++.||||||
T Consensus 78 ~~~~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~-----~~~LS~G~~ 149 (282)
T PRK13640 78 TVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENR---AVPRPEMIKIVRDVLADVGMLDYIDSE-----PANLSGGQK 149 (282)
T ss_pred CHHHHHhheEEEEECHHHhhccCCHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCChhHhcCC-----cccCCHHHH
Confidence 34578999999984 566789999999864322 234555566788999999998766654 578999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecCh
Q 008534 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 380 (562)
Q Consensus 302 qRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~ 380 (562)
||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++.. + ..||++++|++|++++.|++
T Consensus 150 qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~-~-~~~d~i~~l~~G~i~~~g~~ 227 (282)
T PRK13640 150 QRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDE-A-NMADQVLVLDDGKLLAQGSP 227 (282)
T ss_pred HHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-H-HhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999999764 8999999999864 4 57999999999999999999
Q ss_pred HHHHH
Q 008534 381 SEAMA 385 (562)
Q Consensus 381 ~el~~ 385 (562)
+++..
T Consensus 228 ~~~~~ 232 (282)
T PRK13640 228 VEIFS 232 (282)
T ss_pred HHHhc
Confidence 88753
|
|
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-43 Score=357.92 Aligned_cols=223 Identities=22% Similarity=0.395 Sum_probs=185.3
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC-C--CCccEEEECCEeCCh
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-P--TVGGSITYNDHPYSK 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~-~--~~~G~I~i~G~~~~~ 225 (562)
.|+++|++++|. ++.+|+|+||+|++||+++|+||||||||||+++|+|.+.. | +++|+|.++|.++..
T Consensus 4 ~l~~~nl~~~~~--------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~ 75 (252)
T PRK14256 4 KVKLEQLNVHFG--------KNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYD 75 (252)
T ss_pred EEEEEEEEEEeC--------CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEccc
Confidence 589999999982 35699999999999999999999999999999999996531 2 258999999998742
Q ss_pred ------hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChh
Q 008534 226 ------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (562)
Q Consensus 226 ------~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGG 299 (562)
.+++.++||+|++.+|+.+||+||+.++..... .....+.+.++.++++.+++........ +..+..||||
T Consensus 76 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G 152 (252)
T PRK14256 76 RGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNG--RVNRSEADEIVESSLKRVALWDEVKDRL-KSNAMELSGG 152 (252)
T ss_pred ccCChHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhHHh-hCCcCcCCHH
Confidence 346789999999999998999999987643221 1123334456788899999854221111 2345789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecC
Q 008534 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (562)
Q Consensus 300 qrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (562)
||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++. .+.++||++++|++|++++.|+
T Consensus 153 ~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~~~~ 230 (252)
T PRK14256 153 QQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE-KYTIIIVTHNMQ-QAARVSDYTAFFYMGDLVECGE 230 (252)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCcEEEEECCHH-HHHhhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999975 689999999975 4678899999999999999999
Q ss_pred hHHHH
Q 008534 380 ASEAM 384 (562)
Q Consensus 380 ~~el~ 384 (562)
++++.
T Consensus 231 ~~~~~ 235 (252)
T PRK14256 231 TKKIF 235 (252)
T ss_pred HHHHH
Confidence 88864
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-44 Score=363.09 Aligned_cols=221 Identities=25% Similarity=0.427 Sum_probs=185.7
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh--
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~-- 225 (562)
..|+++||++.| +++.+|+|+||+|++||+++|+||||||||||+++|+|.. ++.+|+|.++|.++..
T Consensus 10 ~~l~i~~l~~~~--------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~--~~~~G~i~~~g~~~~~~~ 79 (265)
T PRK10575 10 TTFALRNVSFRV--------PGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQ--PPSEGEILLDAQPLESWS 79 (265)
T ss_pred ceEEEeeEEEEE--------CCEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCC--CCCCCEEEECCEehhhCC
Confidence 369999999998 2457999999999999999999999999999999999954 3568999999998642
Q ss_pred --hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCC-CccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHH
Q 008534 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPN-TLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (562)
Q Consensus 226 --~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrq 302 (562)
.+++.++||+|++.+++.+||.||+.++....... ........+++.++++.++|.+..++. +.+|||||||
T Consensus 80 ~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~q 154 (265)
T PRK10575 80 SKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRL-----VDSLSGGERQ 154 (265)
T ss_pred HHHHhhheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCC-----cccCCHHHHH
Confidence 34567999999988888899999998753211000 011123345678899999997666654 4689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChH
Q 008534 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKAS 381 (562)
Q Consensus 303 Rv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~ 381 (562)
||+|||||+.+|+||||||||+|||+.++..+.+.|++++++ |.|||++||++. .+.+.||+|++|++|++++.|+++
T Consensus 155 rv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~-~i~~~~d~i~~l~~G~i~~~~~~~ 233 (265)
T PRK10575 155 RAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDIN-MAARYCDYLVALRGGEMIAQGTPA 233 (265)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCeEEEecCHH
Confidence 999999999999999999999999999999999999999765 899999999976 467899999999999999999987
Q ss_pred HHH
Q 008534 382 EAM 384 (562)
Q Consensus 382 el~ 384 (562)
++.
T Consensus 234 ~~~ 236 (265)
T PRK10575 234 ELM 236 (265)
T ss_pred Hhc
Confidence 753
|
|
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-44 Score=361.60 Aligned_cols=223 Identities=23% Similarity=0.399 Sum_probs=184.7
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC---CCccEEEECCEeCCh
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP---TVGGSITYNDHPYSK 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~---~~~G~I~i~G~~~~~ 225 (562)
.|+++||++.| +++.+|+|+||+|++||+++|+||||||||||+++|+|....+ +.+|+|+++|+++..
T Consensus 19 ~l~~~nl~~~~--------~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~ 90 (267)
T PRK14235 19 KMRARDVSVFY--------GEKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYD 90 (267)
T ss_pred eEEEEeEEEEE--------CCEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcc
Confidence 79999999998 2457999999999999999999999999999999999965421 368999999998742
Q ss_pred ------hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChh
Q 008534 226 ------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (562)
Q Consensus 226 ------~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGG 299 (562)
.+++.++||+|++.+|+. ||.||+.++...+.. ........+++.++++.++|.+...... +..+..||||
T Consensus 91 ~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LSgG 167 (267)
T PRK14235 91 PRLDVVELRARVGMVFQKPNPFPK-SIYENVAYGPRIHGL-ARSKAELDEIVETSLRKAGLWEEVKDRL-HEPGTGLSGG 167 (267)
T ss_pred cccchHHHhhceEEEecCCCCCCC-cHHHHHHHHHHhccc-ccchHHHHHHHHHHHHHcCCchhhhHHh-hCCcccCCHH
Confidence 346779999999999985 999999987543210 0123334556788999999964221111 2345789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecC
Q 008534 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (562)
Q Consensus 300 qrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (562)
|||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++. .+...||++++|++|++++.|+
T Consensus 168 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~-~~tiiivtH~~~-~~~~~~d~v~~l~~G~i~~~g~ 245 (267)
T PRK14235 168 QQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ-NYTIVIVTHSMQ-QAARVSQRTAFFHLGNLVEVGD 245 (267)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc-CCeEEEEEcCHH-HHHhhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999975 789999999976 4668899999999999999999
Q ss_pred hHHHH
Q 008534 380 ASEAM 384 (562)
Q Consensus 380 ~~el~ 384 (562)
++++.
T Consensus 246 ~~~~~ 250 (267)
T PRK14235 246 TEKMF 250 (267)
T ss_pred HHHHH
Confidence 88764
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-43 Score=357.02 Aligned_cols=222 Identities=28% Similarity=0.438 Sum_probs=183.2
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC-CCC--CccEEEECCEeCCh
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLM-EPT--VGGSITYNDHPYSK 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~-~~~--~~G~I~i~G~~~~~ 225 (562)
.|+++||+++| .++.+|+|+||+|++||+++|+||||||||||+++|+|... .|. .+|+|.++|+++..
T Consensus 5 ~l~~~~l~~~~--------~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~ 76 (252)
T PRK14239 5 ILQVSDLSVYY--------NKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYS 76 (252)
T ss_pred eEEEEeeEEEE--------CCeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcC
Confidence 68999999998 24579999999999999999999999999999999999642 232 48999999998731
Q ss_pred ------hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChh
Q 008534 226 ------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (562)
Q Consensus 226 ------~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGG 299 (562)
.+++.++||+|++.+|+ +||+||+.++..... .........++.++++.+++.+..... .+..+..||||
T Consensus 77 ~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~~~~LS~G 152 (252)
T PRK14239 77 PRTDTVDLRKEIGMVFQQPNPFP-MSIYENVVYGLRLKG--IKDKQVLDEAVEKSLKGASIWDEVKDR-LHDSALGLSGG 152 (252)
T ss_pred cccchHhhhhcEEEEecCCccCc-CcHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCchhHHHH-HhcCcccCCHH
Confidence 34667999999999997 799999998753321 111233345677888888875321111 12346789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecC
Q 008534 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (562)
Q Consensus 300 qrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (562)
|||||+|||||+.+|+||||||||+|||+.++..+.+.|+++.+ ++|||++||++. .+.+.||+|++|++|++++.|+
T Consensus 153 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~g~ 230 (252)
T PRK14239 153 QQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD-DYTMLLVTRSMQ-QASRISDRTGFFLDGDLIEYND 230 (252)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh-CCeEEEEECCHH-HHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999865 689999999975 4678899999999999999999
Q ss_pred hHHHH
Q 008534 380 ASEAM 384 (562)
Q Consensus 380 ~~el~ 384 (562)
++++.
T Consensus 231 ~~~~~ 235 (252)
T PRK14239 231 TKQMF 235 (252)
T ss_pred HHHHH
Confidence 98864
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-43 Score=358.95 Aligned_cols=222 Identities=24% Similarity=0.410 Sum_probs=184.1
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC-CC--CccEEEECCEeCCh
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-PT--VGGSITYNDHPYSK 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~-~~--~~G~I~i~G~~~~~ 225 (562)
+|+++||++.| +.+++|+|+||+|++||+++|+||||||||||+++|+|.+.. |. .+|+|.++|+++..
T Consensus 12 ~l~i~~l~~~~--------~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~ 83 (259)
T PRK14274 12 VYQINGMNLWY--------GQHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILK 83 (259)
T ss_pred eEEEeeEEEEE--------CCeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccc
Confidence 69999999998 245799999999999999999999999999999999996531 21 58999999998741
Q ss_pred ------hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChh
Q 008534 226 ------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (562)
Q Consensus 226 ------~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGG 299 (562)
.+++.++|++|++.+|+. ||+||+.+...... ...+.+..+++.++++.+++.+..... -+..+.+||||
T Consensus 84 ~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-l~~~~~~LS~G 159 (259)
T PRK14274 84 GKVDLVELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIHG--TKNKKKLQEIVEKSLKDVALWDEVKDR-LHTQALSLSGG 159 (259)
T ss_pred cccCHHHHhhceEEEecCCccccc-CHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhhh-hhCCcccCCHH
Confidence 346779999999999985 99999998653321 112334455677889988885421111 12345789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecC
Q 008534 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (562)
Q Consensus 300 qrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (562)
||||++|||+|+.+|+||||||||+|||+.++..+.+.|+++.+ ++|||++||++. .+.+.||++++|++|++++.|+
T Consensus 160 q~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l~~G~i~~~g~ 237 (259)
T PRK14274 160 QQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE-KYTIVIVTHNMQ-QAARVSDQTAFFYMGELVECND 237 (259)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHH-HHHHhCCEEEEEECCEEEEECC
Confidence 99999999999999999999999999999999999999999865 789999999976 4678899999999999999999
Q ss_pred hHHHH
Q 008534 380 ASEAM 384 (562)
Q Consensus 380 ~~el~ 384 (562)
++++.
T Consensus 238 ~~~~~ 242 (259)
T PRK14274 238 TNKMF 242 (259)
T ss_pred HHHHh
Confidence 98864
|
|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-43 Score=358.58 Aligned_cols=223 Identities=22% Similarity=0.392 Sum_probs=184.6
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC-C--CCccEEEECCEeCC-
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-P--TVGGSITYNDHPYS- 224 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~-~--~~~G~I~i~G~~~~- 224 (562)
.++++||+++| +++.+|+|+||+|++||+++|+||||||||||+++|+|.... | +.+|+|.++|.++.
T Consensus 4 ~l~i~~v~~~~--------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~ 75 (258)
T PRK14241 4 RIDVKDLNIYY--------GSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYG 75 (258)
T ss_pred cEEEeeEEEEE--------CCEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccc
Confidence 58999999998 235799999999999999999999999999999999996542 1 25899999998863
Q ss_pred -----hhccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChh
Q 008534 225 -----KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (562)
Q Consensus 225 -----~~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGG 299 (562)
..+++.++||+|++.+|+.+||+||+.++...+. .......++++.++++.++|.+...... +..+.+||||
T Consensus 76 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G 152 (258)
T PRK14241 76 PGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNG--VRNKKDLDELVEKSLRGANLWNEVKDRL-DKPGGGLSGG 152 (258)
T ss_pred cccChHHHhcceEEEccccccCCCCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhhHh-hCCcccCCHH
Confidence 1346779999999999998999999998754321 1123344556788899998842111111 2345789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEc------CCe
Q 008534 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG------KGS 373 (562)
Q Consensus 300 qrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~------~G~ 373 (562)
|||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++. .+.+.||+|++|+ +|+
T Consensus 153 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tviivsH~~~-~~~~~~d~i~~l~~~~~~~~g~ 230 (258)
T PRK14241 153 QQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQ-DYTIVIVTHNMQ-QAARVSDQTAFFNLEATGKPGR 230 (258)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhCCEEEEEecccCCCCce
Confidence 99999999999999999999999999999999999999999964 689999999975 4678899999996 799
Q ss_pred EEEecChHHHH
Q 008534 374 LLYFGKASEAM 384 (562)
Q Consensus 374 iv~~G~~~el~ 384 (562)
+++.|+++++.
T Consensus 231 i~~~~~~~~~~ 241 (258)
T PRK14241 231 LVEIDDTEKIF 241 (258)
T ss_pred EEecCCHHHHH
Confidence 99999998874
|
|
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-44 Score=352.07 Aligned_cols=210 Identities=29% Similarity=0.493 Sum_probs=181.4
Q ss_pred EEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhccC
Q 008534 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKS 229 (562)
Q Consensus 150 l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~~ 229 (562)
|+++||+++| .++++|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++....++
T Consensus 1 l~l~~v~~~~--------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~~~~~~~~~~~ 70 (223)
T TIGR03740 1 LETKNLSKRF--------GKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILR--PTSGEIIFDGHPWTRKDLH 70 (223)
T ss_pred CEEEeEEEEE--------CCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEeccccccc
Confidence 4689999988 24579999999999999999999999999999999999653 5689999999987543335
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHH
Q 008534 230 KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNE 309 (562)
Q Consensus 230 ~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAra 309 (562)
.++|++|++.+++.+|++||+.+...... .. +.++.++++.+||.+..+.. +..||||||||++||||
T Consensus 71 ~~~~~~q~~~~~~~~t~~~~~~~~~~~~~---~~----~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~~rv~lara 138 (223)
T TIGR03740 71 KIGSLIESPPLYENLTARENLKVHTTLLG---LP----DSRIDEVLNIVDLTNTGKKK-----AKQFSLGMKQRLGIAIA 138 (223)
T ss_pred cEEEEcCCCCccccCCHHHHHHHHHHHcC---CC----HHHHHHHHHHcCCcHHHhhh-----HhhCCHHHHHHHHHHHH
Confidence 79999999999988999999987654321 11 23567889999998766654 46899999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHH
Q 008534 310 IIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (562)
Q Consensus 310 Ll~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~e 382 (562)
|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+.+.||+|++|++|++++.|++.+
T Consensus 139 l~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 139 LLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILS-EVQQLADHIGIISEGVLGYQGKINK 210 (223)
T ss_pred HhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHhcCEEEEEeCCEEEEecChhh
Confidence 99999999999999999999999999999999877899999999976 4678899999999999999998753
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-44 Score=359.93 Aligned_cols=219 Identities=26% Similarity=0.450 Sum_probs=184.0
Q ss_pred EEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh----
Q 008534 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (562)
Q Consensus 150 l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~---- 225 (562)
|+++|+++.| .++.+|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++..
T Consensus 2 l~~~~l~~~~--------~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~ 71 (256)
T TIGR03873 2 LRLSRVSWSA--------GGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALR--PDAGTVDLAGVDLHGLSRR 71 (256)
T ss_pred ceEEeEEEEE--------CCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC--CCCCEEEECCEEcccCCHH
Confidence 6899999998 24579999999999999999999999999999999999543 568999999998743
Q ss_pred hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCC-CCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHH
Q 008534 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLP-NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (562)
Q Consensus 226 ~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 304 (562)
..++.++|++|++.+++.+||+||+.++...... ......+..+++.++++.+++.+..++. +..|||||||||
T Consensus 72 ~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl 146 (256)
T TIGR03873 72 ARARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRD-----MSTLSGGERQRV 146 (256)
T ss_pred HHhhheEEecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCC-----cccCCHHHHHHH
Confidence 3356799999998877789999999885311000 0011123345678899999997665654 468999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHH
Q 008534 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (562)
Q Consensus 305 ~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~ 384 (562)
+|||||+.+|++|||||||+|||+.++..+.+.|++++++|.|||++||++. .+.+.||+|++|++|++++.|+++++.
T Consensus 147 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 225 (256)
T TIGR03873 147 HVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLN-LAASYCDHVVVLDGGRVVAAGPPREVL 225 (256)
T ss_pred HHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCCEEEecCHHHhh
Confidence 9999999999999999999999999999999999999877899999999976 467899999999999999999988763
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-44 Score=362.22 Aligned_cols=220 Identities=23% Similarity=0.395 Sum_probs=185.9
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
.|+++||+++| +++.+|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|+++..
T Consensus 7 ~l~i~~l~~~~--------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~ 76 (265)
T PRK10253 7 RLRGEQLTLGY--------GKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMT--PAHGHVWLDGEHIQHYAS 76 (265)
T ss_pred EEEEEEEEEEE--------CCEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCcEEEECCEEhhhCCH
Confidence 69999999998 24579999999999999999999999999999999999643 568999999998742
Q ss_pred -hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCC-CccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHH
Q 008534 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPN-TLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (562)
Q Consensus 226 -~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqR 303 (562)
..++.|+||+|++.+++.+||+||+.++.....+. .........++.++++.++|.+..++ .+..||||||||
T Consensus 77 ~~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~Gq~qr 151 (265)
T PRK10253 77 KEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQ-----SVDTLSGGQRQR 151 (265)
T ss_pred HHHhhheEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcC-----CcccCChHHHHH
Confidence 34567999999999998899999998753111000 00112334567889999999765555 357899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHH
Q 008534 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (562)
Q Consensus 304 v~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~e 382 (562)
++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||++. .+.++||+|++|++|++++.|++++
T Consensus 152 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~ 230 (265)
T PRK10253 152 AWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLN-QACRYASHLIALREGKIVAQGAPKE 230 (265)
T ss_pred HHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999764 899999999976 4778999999999999999999887
Q ss_pred HH
Q 008534 383 AM 384 (562)
Q Consensus 383 l~ 384 (562)
+.
T Consensus 231 ~~ 232 (265)
T PRK10253 231 IV 232 (265)
T ss_pred Hh
Confidence 64
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-43 Score=359.76 Aligned_cols=224 Identities=24% Similarity=0.380 Sum_probs=187.0
Q ss_pred ceeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC---CCCccEEEECCEeC
Q 008534 147 PIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME---PTVGGSITYNDHPY 223 (562)
Q Consensus 147 ~~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~---~~~~G~I~i~G~~~ 223 (562)
...|+++||+++| .++++|+||||+|++||+++|+||||||||||+++|+|.+.. .+.+|+|.++|.++
T Consensus 18 ~~~l~~~nl~~~~--------~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~ 89 (267)
T PRK14237 18 EIALSTKDLHVYY--------GKKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDI 89 (267)
T ss_pred CeEEEEeeEEEEE--------CCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEc
Confidence 4479999999998 246799999999999999999999999999999999996532 14689999999987
Q ss_pred Ch------hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCC
Q 008534 224 SK------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVS 297 (562)
Q Consensus 224 ~~------~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LS 297 (562)
.. ..++.|+||+|++.+|+ .||+||+.++.... . ...+...+.++.++++.++|.+..+... +..+..||
T Consensus 90 ~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~-~-~~~~~~~~~~~~~~l~~~~l~~~i~~~~-~~~~~~LS 165 (267)
T PRK14237 90 NRKEINVYEMRKHIGMVFQRPNPFA-KSIYENITFALERA-G-VKDKKVLDEIVETSLKQAALWDQVKDDL-HKSALTLS 165 (267)
T ss_pred ccccCChHHHhcceEEEecCCcccc-ccHHHHHHhHHHhc-C-CCCHHHHHHHHHHHHHHcCCCchhhhhh-cCCcccCC
Confidence 42 24667999999999987 69999999875321 1 1123344566788899998854322222 34567899
Q ss_pred hhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEe
Q 008534 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (562)
Q Consensus 298 GGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~ 377 (562)
||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++.+ +.|||++||++. .+.++||++++|++|++++.
T Consensus 166 ~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~i~~l~~G~i~~~ 243 (267)
T PRK14237 166 GGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKK-NYTIIIVTHNMQ-QAARASDYTAFFYLGDLIEY 243 (267)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhcCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999999964 799999999976 46789999999999999999
Q ss_pred cChHHHH
Q 008534 378 GKASEAM 384 (562)
Q Consensus 378 G~~~el~ 384 (562)
|+++++.
T Consensus 244 g~~~~~~ 250 (267)
T PRK14237 244 DKTRNIF 250 (267)
T ss_pred CCHHHHh
Confidence 9998864
|
|
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-43 Score=355.06 Aligned_cols=216 Identities=27% Similarity=0.501 Sum_probs=186.4
Q ss_pred EEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh--hc
Q 008534 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SL 227 (562)
Q Consensus 150 l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--~~ 227 (562)
++++|++++| ..+++|+|+||++.+||+++|+||||||||||+++|+|.+. +.+|+|.++|.++.. ..
T Consensus 1 i~i~~l~~~~--------~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~i~g~~~~~~~~~ 70 (237)
T TIGR00968 1 IEIANISKRF--------GSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQ--PDSGRIRLNGQDATRVHAR 70 (237)
T ss_pred CEEEEEEEEE--------CCeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEcCcCChh
Confidence 4689999998 24579999999999999999999999999999999999643 568999999998753 33
Q ss_pred cCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHH
Q 008534 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (562)
Q Consensus 228 ~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA 307 (562)
++.++|++|++.+|+.+|+.||+.+....+ ........+.+.++++.+++.+..++. +..|||||+||++||
T Consensus 71 ~~~i~~~~q~~~~~~~~t~~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~lS~G~~qrl~la 142 (237)
T TIGR00968 71 DRKIGFVFQHYALFKHLTVRDNIAFGLEIR---KHPKAKIKARVEELLELVQLEGLGDRY-----PNQLSGGQRQRVALA 142 (237)
T ss_pred hcCEEEEecChhhccCCcHHHHHHhHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCC-----hhhCCHHHHHHHHHH
Confidence 567999999999999899999999875432 122333446678899999997666654 468999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHH
Q 008534 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (562)
Q Consensus 308 raLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~ 384 (562)
|+|+.+|+++||||||+|||+.++..+.+.|++++++ |+|||++||++. .+.+.||++++|++|++++.|+++++.
T Consensus 143 ral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~-~~~~~~d~i~~l~~g~i~~~~~~~~~~ 219 (237)
T TIGR00968 143 RALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQE-EAMEVADRIVVMSNGKIEQIGSPDEVY 219 (237)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCEEEEEECCEEEEecCHHHHH
Confidence 9999999999999999999999999999999998775 899999999975 467889999999999999999988874
|
|
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-45 Score=363.80 Aligned_cols=203 Identities=30% Similarity=0.506 Sum_probs=185.8
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh-------hc-cCcEEEEccCCCCCC
Q 008534 171 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-------SL-KSKIGFVTQDDVLFP 242 (562)
Q Consensus 171 ~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~-------~~-~~~igyV~Q~~~l~~ 242 (562)
.-++|+||+|+.||++.|||-||||||||+++|.+ +.+| +.|+|+++|.++.+ .+ |+++++|||...|+|
T Consensus 42 vGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~Nr-Liep-t~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlP 119 (386)
T COG4175 42 VGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNR-LIEP-TRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLP 119 (386)
T ss_pred EeeccceeeecCCeEEEEEecCCCCHHHHHHHHhc-cCCC-CCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhcccc
Confidence 46899999999999999999999999999999995 5554 58999999998742 23 467999999999999
Q ss_pred CCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEeCC
Q 008534 243 HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEP 322 (562)
Q Consensus 243 ~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEP 322 (562)
+.||.||..|+...+ +++++++++++.++|+.+||..+.+. ++++|||||||||.|||||+.+|+|||+|||
T Consensus 120 hrtVl~Nv~fGLev~---Gv~~~er~~~a~~~l~~VgL~~~~~~-----yp~eLSGGMqQRVGLARAla~~~~IlLMDEa 191 (386)
T COG4175 120 HRTVLENVAFGLEVQ---GVPKAEREERALEALELVGLEGYADK-----YPNELSGGMQQRVGLARALANDPDILLMDEA 191 (386)
T ss_pred chhHhhhhhcceeec---CCCHHHHHHHHHHHHHHcCchhhhhc-----CcccccchHHHHHHHHHHHccCCCEEEecCc
Confidence 999999999998765 57899999999999999999988775 5689999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHH
Q 008534 323 TSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (562)
Q Consensus 323 TsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~ 384 (562)
+|+|||--+.++.+.|.+|.++ ++|||+||||+++ .+++.|||.+|++|+||..|+|+|++
T Consensus 192 FSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdE-AlriG~rIaimkdG~ivQ~Gtp~eIl 253 (386)
T COG4175 192 FSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDE-ALRIGDRIAIMKDGEIVQVGTPEEIL 253 (386)
T ss_pred hhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHH-HHhccceEEEecCCeEEEeCCHHHHH
Confidence 9999999999999999999654 8999999999864 78999999999999999999999987
|
|
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-43 Score=351.87 Aligned_cols=214 Identities=31% Similarity=0.464 Sum_probs=179.0
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChh-
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS- 226 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~- 226 (562)
.+|+++||+++|... ....++|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++...
T Consensus 5 ~~l~~~~l~~~~~~~----~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~~~~~~ 78 (228)
T PRK10584 5 NIVEVHHLKKSVGQG----EHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDD--GSSGEVSLVGQPLHQMD 78 (228)
T ss_pred ceEEEeeeEEEccCC----CcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCCeeEEECCEEcccCC
Confidence 369999999998210 011359999999999999999999999999999999999543 5689999999987421
Q ss_pred ------c-cCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChh
Q 008534 227 ------L-KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (562)
Q Consensus 227 ------~-~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGG 299 (562)
. ++.++|++|++.+++.+||.||+.+....+ ........+++.++++.++|.+..+.. +..||||
T Consensus 79 ~~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G 150 (228)
T PRK10584 79 EEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLR---GESSRQSRNGAKALLEQLGLGKRLDHL-----PAQLSGG 150 (228)
T ss_pred HHHHHHHHhheEEEEEcccccCCCcCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCC-----hhhCCHH
Confidence 2 257999999999999899999998865332 123344556788999999998766554 4689999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEe
Q 008534 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (562)
Q Consensus 300 qrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~ 377 (562)
||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||++.. + ..||++++|++|++++.
T Consensus 151 e~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~-~-~~~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 151 EQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQL-A-ARCDRRLRLVNGQLQEE 227 (228)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-H-HhCCEEEEEECCEEEec
Confidence 999999999999999999999999999999999999999999764 8999999999763 4 56999999999999753
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-44 Score=349.88 Aligned_cols=208 Identities=25% Similarity=0.443 Sum_probs=175.2
Q ss_pred EEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh--hc
Q 008534 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SL 227 (562)
Q Consensus 150 l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--~~ 227 (562)
|+++|++++|. ++. .|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.++.. ..
T Consensus 1 i~~~~l~~~~~--------~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~--~~~G~i~~~g~~~~~~~~~ 68 (211)
T cd03298 1 VRLDKIRFSYG--------EQP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFET--PQSGRVLINGVDVTAAPPA 68 (211)
T ss_pred CEEEeEEEEeC--------CEe--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcCcCCHh
Confidence 46899999882 222 39999999999999999999999999999999643 568999999998743 23
Q ss_pred cCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHH
Q 008534 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (562)
Q Consensus 228 ~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA 307 (562)
++.++|++|++.+|+.+||+||+.++..... .. ....++++.++++.++|.+..++. +.+||||||||++||
T Consensus 69 ~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~-~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~ia 140 (211)
T cd03298 69 DRPVSMLFQENNLFAHLTVEQNVGLGLSPGL--KL-TAEDRQAIEVALARVGLAGLEKRL-----PGELSGGERQRVALA 140 (211)
T ss_pred HccEEEEecccccCCCCcHHHHHhccccccc--Cc-cHHHHHHHHHHHHHcCCHHHHhCC-----cccCCHHHHHHHHHH
Confidence 5679999999999998999999987643211 11 123455688899999998766654 468999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEec
Q 008534 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (562)
Q Consensus 308 raLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G 378 (562)
|||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. .+.++||++++|++|++++.|
T Consensus 141 ~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 141 RVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPE-DAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHhhhCEEEEEECCEEeecC
Confidence 9999999999999999999999999999999999754 899999999975 466789999999999998764
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-43 Score=355.96 Aligned_cols=212 Identities=31% Similarity=0.484 Sum_probs=181.5
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
.|+++||+++| .++.+|+|+||+|++|++++|+||||||||||+++|+|.+. +.+|+|.++|.++..
T Consensus 3 ~l~~~~l~~~~--------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~ 72 (241)
T PRK14250 3 EIEFKEVSYSS--------FGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLID--PTEGSILIDGVDIKTIDV 72 (241)
T ss_pred eEEEEeEEEEe--------CCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEhhhcCh
Confidence 58999999988 24569999999999999999999999999999999999643 568999999998742
Q ss_pred -hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCC-ccccccccCcccCCCChhHHHH
Q 008534 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVSGGERKR 303 (562)
Q Consensus 226 -~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~~LSGGqrqR 303 (562)
.+++.++|++|++.+|+ .||+||+.++...+ . ....++.++++.++|+ +..++ .+..||||||||
T Consensus 73 ~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~---~----~~~~~~~~~l~~~~l~~~~~~~-----~~~~LS~G~~qr 139 (241)
T PRK14250 73 IDLRRKIGMVFQQPHLFE-GTVKDNIEYGPMLK---G----EKNVDVEYYLSIVGLNKEYATR-----DVKNLSGGEAQR 139 (241)
T ss_pred HHhhhcEEEEecCchhch-hhHHHHHhcchhhc---C----cHHHHHHHHHHHcCCCHHHhhC-----CcccCCHHHHHH
Confidence 34677999999999987 69999998754321 1 1134577889999996 34443 457899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHH
Q 008534 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (562)
Q Consensus 304 v~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~e 382 (562)
++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. .+...||+|++|++|++++.|++++
T Consensus 140 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~ 218 (241)
T PRK14250 140 VSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNME-QAKRIGDYTAFLNKGILVEYAKTYD 218 (241)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHH-HHHHhCCEEEEEeCCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999764 899999999976 4667899999999999999999988
Q ss_pred HH
Q 008534 383 AM 384 (562)
Q Consensus 383 l~ 384 (562)
+.
T Consensus 219 ~~ 220 (241)
T PRK14250 219 FF 220 (241)
T ss_pred Hh
Confidence 64
|
|
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-43 Score=352.51 Aligned_cols=216 Identities=28% Similarity=0.471 Sum_probs=186.5
Q ss_pred EEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh--hc
Q 008534 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SL 227 (562)
Q Consensus 150 l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--~~ 227 (562)
|+++|++++| ..+.+|+|+||+|++|++++|+||||||||||+++|+|.+. +.+|+|.++|+++.. ..
T Consensus 1 l~~~~l~~~~--------~~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~--~~~G~i~~~g~~~~~~~~~ 70 (232)
T cd03300 1 IELENVSKFY--------GGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFET--PTSGEILLDGKDITNLPPH 70 (232)
T ss_pred CEEEeEEEEe--------CCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEcCcCChh
Confidence 4689999998 24579999999999999999999999999999999999543 458999999998753 23
Q ss_pred cCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHH
Q 008534 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (562)
Q Consensus 228 ~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA 307 (562)
++.++||+|++.+|+.+|++||+.++...+. .......+++.++++.+|+.+..++. +..||||||||++||
T Consensus 71 ~~~i~~~~q~~~~~~~~t~~~nl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~lS~G~~qrl~la 142 (232)
T cd03300 71 KRPVNTVFQNYALFPHLTVFENIAFGLRLKK---LPKAEIKERVAEALDLVQLEGYANRK-----PSQLSGGQQQRVAIA 142 (232)
T ss_pred hcceEEEecccccCCCCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchhhcCC-----hhhCCHHHHHHHHHH
Confidence 5679999999999988999999998754331 22334455678899999998776654 468999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHH
Q 008534 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (562)
Q Consensus 308 raLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~ 384 (562)
|||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++. .+.+.||++++|++|++++.|+++++.
T Consensus 143 ral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~-~~~~~~d~i~~l~~G~~~~~~~~~~~~ 219 (232)
T cd03300 143 RALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQE-EALTMSDRIAVMNKGKIQQIGTPEEIY 219 (232)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEEECCEEEecCCHHHHH
Confidence 9999999999999999999999999999999999764 899999999975 467889999999999999999987764
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-43 Score=361.01 Aligned_cols=219 Identities=24% Similarity=0.422 Sum_probs=186.0
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
.|+++||+++|.. ...+.+|+||||+|++||+++|+|+||||||||+++|+|... +.+|+|.++|.++..
T Consensus 4 ~l~~~~l~~~~~~-----~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~i~~~~~ 76 (277)
T PRK13642 4 ILEVENLVFKYEK-----ESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFE--EFEGKVKIDGELLTAENV 76 (277)
T ss_pred eEEEEEEEEEcCC-----CCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCCEEEECCEECCcCCH
Confidence 6899999999821 123469999999999999999999999999999999999653 568999999998752
Q ss_pred -hccCcEEEEccCCC-CCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHH
Q 008534 226 -SLKSKIGFVTQDDV-LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (562)
Q Consensus 226 -~~~~~igyV~Q~~~-l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqR 303 (562)
..++.|+||+|++. +++..||.|||.++.... ........+++.++++.+||.+..++. +..||||||||
T Consensus 77 ~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qr 148 (277)
T PRK13642 77 WNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQ---GIPREEMIKRVDEALLAVNMLDFKTRE-----PARLSGGQKQR 148 (277)
T ss_pred HHHhcceEEEEECHHHhhccCCHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHhHhhCC-----cccCCHHHHHH
Confidence 35678999999974 566689999998865322 123444456788899999998766653 56899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHH
Q 008534 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (562)
Q Consensus 304 v~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~e 382 (562)
++|||||+.+|+||||||||+|||+.++..+.+.|++++++ |.|||++||++.. + ..||+|++|++|++++.|++++
T Consensus 149 v~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~-~-~~~d~i~~l~~G~i~~~g~~~~ 226 (277)
T PRK13642 149 VAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDE-A-ASSDRILVMKAGEIIKEAAPSE 226 (277)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-H-HhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999875 8999999999865 4 4699999999999999999988
Q ss_pred HH
Q 008534 383 AM 384 (562)
Q Consensus 383 l~ 384 (562)
+.
T Consensus 227 ~~ 228 (277)
T PRK13642 227 LF 228 (277)
T ss_pred Hh
Confidence 75
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-43 Score=354.94 Aligned_cols=222 Identities=24% Similarity=0.427 Sum_probs=183.1
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC-C--CCccEEEECCEeCCh
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-P--TVGGSITYNDHPYSK 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~-~--~~~G~I~i~G~~~~~ 225 (562)
.|+++||++.|. ++++|+|+||+|++||+++|+||||||||||+++|+|.... | +.+|+|.++|+++..
T Consensus 3 ~l~~~~l~~~~~--------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~ 74 (250)
T PRK14240 3 KISVKDLDLFYG--------DFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYK 74 (250)
T ss_pred eEEEEEEEEEEC--------CceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccc
Confidence 589999999982 35799999999999999999999999999999999996432 2 158999999998742
Q ss_pred ------hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChh
Q 008534 226 ------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (562)
Q Consensus 226 ------~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGG 299 (562)
.+++.++||+|++.+|+ +|++||+.++..... ........+++.++++.+++.+...... +..+.+||||
T Consensus 75 ~~~~~~~~~~~i~~~~q~~~~~~-~t~~~ni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~~LS~G 150 (250)
T PRK14240 75 SDIDVNQLRKRVGMVFQQPNPFP-MSIYDNVAYGPRTHG--IKDKKKLDEIVEKSLKGAALWDEVKDRL-KKSALGLSGG 150 (250)
T ss_pred cccchHHHhccEEEEecCCccCc-ccHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhHHHH-hcCCCCCCHH
Confidence 34677999999999997 899999998754321 1123334556778888888753211111 2345789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecC
Q 008534 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (562)
Q Consensus 300 qrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (562)
||||++|||||+.+|++|||||||+|||+.++..+.+.|+++.+ ++|||++||++. .+.+.||++++|++|++++.|+
T Consensus 151 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~v~~l~~G~i~~~~~ 228 (250)
T PRK14240 151 QQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKK-DYTIVIVTHNMQ-QASRISDKTAFFLNGEIVEFGD 228 (250)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEEeCHH-HHHhhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999864 799999999975 4678899999999999999999
Q ss_pred hHHHH
Q 008534 380 ASEAM 384 (562)
Q Consensus 380 ~~el~ 384 (562)
++++.
T Consensus 229 ~~~~~ 233 (250)
T PRK14240 229 TVDLF 233 (250)
T ss_pred HHHHH
Confidence 88764
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-43 Score=363.95 Aligned_cols=221 Identities=24% Similarity=0.409 Sum_probs=182.7
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCC----
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---- 224 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~---- 224 (562)
.|+++||+++|..+ ......+|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++.
T Consensus 6 ~l~i~nl~~~~~~~---~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~ 80 (289)
T PRK13645 6 DIILDNVSYTYAKK---TPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLII--SETGQTIVGDYAIPANLK 80 (289)
T ss_pred eEEEEEEEEEeCCC---CccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEEcccccc
Confidence 68999999998210 0001359999999999999999999999999999999999653 56899999998863
Q ss_pred -----hhccCcEEEEccCCC--CCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCC-ccccccccCcccCCC
Q 008534 225 -----KSLKSKIGFVTQDDV--LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGV 296 (562)
Q Consensus 225 -----~~~~~~igyV~Q~~~--l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~~L 296 (562)
..+++.|+||+|++. +++ .||+||+.|+.... ........+++.++++.++|+ +..++ .+..|
T Consensus 81 ~~~~~~~~~~~i~~v~q~~~~~~~~-~tv~enl~~~~~~~---~~~~~~~~~~~~~ll~~~~L~~~~~~~-----~~~~L 151 (289)
T PRK13645 81 KIKEVKRLRKEIGLVFQFPEYQLFQ-ETIEKDIAFGPVNL---GENKQEAYKKVPELLKLVQLPEDYVKR-----SPFEL 151 (289)
T ss_pred ccccHHHHhccEEEEEeCcchhhhh-hHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhcC-----ChhhC
Confidence 134667999999973 554 69999999875322 123344445678889999995 44444 35689
Q ss_pred ChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEE
Q 008534 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLL 375 (562)
Q Consensus 297 SGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv 375 (562)
||||||||+|||||+.+|+||||||||+|||+.++..+++.|+++.++ |+|||++||++. .+.++||+|++|++|+++
T Consensus 152 S~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~-~~~~~~d~i~~l~~G~i~ 230 (289)
T PRK13645 152 SGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMD-QVLRIADEVIVMHEGKVI 230 (289)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999764 899999999976 467899999999999999
Q ss_pred EecChHHHH
Q 008534 376 YFGKASEAM 384 (562)
Q Consensus 376 ~~G~~~el~ 384 (562)
+.|+++++.
T Consensus 231 ~~g~~~~~~ 239 (289)
T PRK13645 231 SIGSPFEIF 239 (289)
T ss_pred EeCCHHHHh
Confidence 999988764
|
|
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-43 Score=374.60 Aligned_cols=207 Identities=28% Similarity=0.480 Sum_probs=180.0
Q ss_pred EEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh----
Q 008534 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (562)
Q Consensus 150 l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~---- 225 (562)
|++ ||+++|. ++ .+ |+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|+++..
T Consensus 2 l~~-~l~k~~~--------~~-~~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~--p~~G~I~~~g~~~~~~~~~ 68 (352)
T PRK11144 2 LEL-NFKQQLG--------DL-CL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTR--PQKGRIVLNGRVLFDAEKG 68 (352)
T ss_pred eEE-EEEEEeC--------CE-EE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEccccccc
Confidence 677 8999881 22 23 8999999999999999999999999999999643 568999999988642
Q ss_pred ----hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHH
Q 008534 226 ----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGER 301 (562)
Q Consensus 226 ----~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqr 301 (562)
..++.++||+|++.+|+++||+||+.|+.. ....+++.++++.+||.+..++. +.+||||||
T Consensus 69 ~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~---------~~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgGq~ 134 (352)
T PRK11144 69 ICLPPEKRRIGYVFQDARLFPHYKVRGNLRYGMA---------KSMVAQFDKIVALLGIEPLLDRY-----PGSLSGGEK 134 (352)
T ss_pred cccchhhCCEEEEcCCcccCCCCcHHHHHHhhhh---------hhhHHHHHHHHHHcCCchhhhCC-----cccCCHHHH
Confidence 246789999999999999999999998642 11235678899999998766654 578999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecCh
Q 008534 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 380 (562)
Q Consensus 302 qRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~ 380 (562)
|||+|||||+.+|++|||||||+|||+.++..+.+.|+++.++ |+|+|++||++. ++..+||+|++|++|+++..|++
T Consensus 135 qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~-~~~~~~d~i~~l~~G~i~~~g~~ 213 (352)
T PRK11144 135 QRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLD-EILRLADRVVVLEQGKVKAFGPL 213 (352)
T ss_pred HHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHH-HHHHhCCEEEEEeCCEEEEecCH
Confidence 9999999999999999999999999999999999999999765 899999999975 57789999999999999999999
Q ss_pred HHHH
Q 008534 381 SEAM 384 (562)
Q Consensus 381 ~el~ 384 (562)
+++.
T Consensus 214 ~~i~ 217 (352)
T PRK11144 214 EEVW 217 (352)
T ss_pred HHHH
Confidence 9875
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-43 Score=355.14 Aligned_cols=223 Identities=24% Similarity=0.387 Sum_probs=184.2
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC-C--CCccEEEECCEeCC
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-P--TVGGSITYNDHPYS 224 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~-~--~~~G~I~i~G~~~~ 224 (562)
+.|+++||++.| .++.+|+|+||+|++||+++|+||||||||||+++|+|.... + +.+|+|.++|.++.
T Consensus 3 ~~l~~~~l~~~~--------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~ 74 (251)
T PRK14270 3 IKMESKNLNLWY--------GEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIY 74 (251)
T ss_pred cEEEEEEeEEEE--------CCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecc
Confidence 368999999998 245799999999999999999999999999999999996431 1 25899999999874
Q ss_pred h------hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCCh
Q 008534 225 K------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSG 298 (562)
Q Consensus 225 ~------~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSG 298 (562)
. ..++.++|++|++.+|+ +|++||+.|+..... .........++.++++.+++.+..... -+..+..|||
T Consensus 75 ~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~~~~LS~ 150 (251)
T PRK14270 75 DKDVDVVELRKRVGMVFQKPNPFP-MSIYDNVAYGPRIHG--IKDKKELDKIVEWALKKAALWDEVKDD-LKKSALKLSG 150 (251)
T ss_pred cccccHHHHHhheEEEecCCCcCC-CcHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHcCCchhhhhH-hhCCcccCCH
Confidence 2 24667999999999997 899999998754321 112334445677889998874321111 1234578999
Q ss_pred hHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEec
Q 008534 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (562)
Q Consensus 299 GqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G 378 (562)
|||||++|||||+.+|+||||||||+|||+.++..+.+.|+++.+ ++|||++||++. .+.+.||++++|++|++++.|
T Consensus 151 G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~-~~~~~~d~v~~l~~G~i~~~~ 228 (251)
T PRK14270 151 GQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK-EYTIVIVTHNMQ-QASRVSDYTAFFLMGDLIEFN 228 (251)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEEcCHH-HHHHhcCEEEEEECCeEEEeC
Confidence 999999999999999999999999999999999999999999876 689999999975 467889999999999999999
Q ss_pred ChHHHH
Q 008534 379 KASEAM 384 (562)
Q Consensus 379 ~~~el~ 384 (562)
+++++.
T Consensus 229 ~~~~~~ 234 (251)
T PRK14270 229 KTEKIF 234 (251)
T ss_pred CHHHHh
Confidence 998864
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-43 Score=368.38 Aligned_cols=224 Identities=21% Similarity=0.366 Sum_probs=187.5
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC---CCCccEEEECCEeCC
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME---PTVGGSITYNDHPYS 224 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~---~~~~G~I~i~G~~~~ 224 (562)
..|+++|++++|. ...+++|+|+||+|++||++||+||||||||||+++|+|.... .+.+|+|.+||+++.
T Consensus 79 ~~i~~~nls~~y~------~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~ 152 (329)
T PRK14257 79 NVFEIRNFNFWYM------NRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTR 152 (329)
T ss_pred ceEEEEeeEEEec------CCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcc
Confidence 4799999999983 1245799999999999999999999999999999999986431 135899999999985
Q ss_pred ------hhccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCcc-HHHHHHHHHHHHHHcCCCccccccccCcccCCCC
Q 008534 225 ------KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLT-KQQKEKRAIDVINELGLERCQDTMIGGSFVRGVS 297 (562)
Q Consensus 225 ------~~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~-~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LS 297 (562)
..+++.++||||++.+|+ .|++|||.|+.... ... ++..++.+.++++.++|.+..++.++ ..+..||
T Consensus 153 ~~~~~~~~lr~~i~~v~q~~~~~~-~ti~eNi~~~~~~~---~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~-~~~~~LS 227 (329)
T PRK14257 153 SKKISSLELRTRIGMVFQKPTPFE-MSIFDNVAYGPRNN---GINDRKILEKIVEKSLKSAALWDEVKDDLD-KAGNALS 227 (329)
T ss_pred ccccchHhhhccEEEEecCCccCC-CcHHHHHHhHHHhc---CCChHHHHHHHHHHHHHHcCCcchhhhhhh-CCcccCC
Confidence 245778999999999996 79999999875321 122 22334456778888888654444443 4567899
Q ss_pred hhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEe
Q 008534 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (562)
Q Consensus 298 GGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~ 377 (562)
|||||||+|||||+.+|+||||||||+|||+.+...+.+.|+++.+ ++|||++||++.. +.+.||+|++|++|++++.
T Consensus 228 gGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~-~~Tii~iTH~l~~-i~~~~Driivl~~G~i~e~ 305 (329)
T PRK14257 228 GGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK-KYSIIIVTHSMAQ-AQRISDETVFFYQGWIEEA 305 (329)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHH-HHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999999875 7999999999764 6678999999999999999
Q ss_pred cChHHHH
Q 008534 378 GKASEAM 384 (562)
Q Consensus 378 G~~~el~ 384 (562)
|+++++.
T Consensus 306 g~~~~l~ 312 (329)
T PRK14257 306 GETKTIF 312 (329)
T ss_pred CCHHHHh
Confidence 9999985
|
|
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-45 Score=386.07 Aligned_cols=215 Identities=31% Similarity=0.545 Sum_probs=184.9
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
.++++||+|+|+ +...++|+|+||++++||.+||+|+||||||||+++|+|. ++ +.+|+|.+||.++..
T Consensus 336 ~l~~~~vsF~y~------~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~-~~-~~~G~i~~~g~~~~~l~~ 407 (573)
T COG4987 336 ALELRNVSFTYP------GQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGA-WD-PQQGSITLNGVEIASLDE 407 (573)
T ss_pred eeeeccceeecC------CCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhc-cC-CCCCeeeECCcChhhCCh
Confidence 699999999993 3456799999999999999999999999999999999984 44 458999999998752
Q ss_pred -hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCC-------CccccccccCcccCCCC
Q 008534 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL-------ERCQDTMIGGSFVRGVS 297 (562)
Q Consensus 226 -~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~t~vg~~~~~~LS 297 (562)
.+++.|++++|...+|.+ |+++||.++.. . .+++ .+.++++.+|| ++.+||.+|+. .+.||
T Consensus 408 ~~~~e~i~vl~Qr~hlF~~-Tlr~NL~lA~~----~-AsDE----el~~aL~qvgL~~l~~~~p~gl~t~lge~-G~~LS 476 (573)
T COG4987 408 QALRETISVLTQRVHLFSG-TLRDNLRLANP----D-ASDE----ELWAALQQVGLEKLLESAPDGLNTWLGEG-GRRLS 476 (573)
T ss_pred hhHHHHHhhhccchHHHHH-HHHHHHhhcCC----C-CCHH----HHHHHHHHcCHHHHHHhChhhhhchhccC-CCcCC
Confidence 367889999999999975 99999998742 1 2333 34455555554 45677778754 56799
Q ss_pred hhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEe
Q 008534 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (562)
Q Consensus 298 GGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~ 377 (562)
||||||++|||+|++|.+++||||||.|||+.++.++++.|.+-++ |+|+|++||++.. .+.||+|+||++|++++.
T Consensus 477 GGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~-~kTll~vTHrL~~--le~~drIivl~~Gkiie~ 553 (573)
T COG4987 477 GGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAE-GKTLLMVTHRLRG--LERMDRIIVLDNGKIIEE 553 (573)
T ss_pred chHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhc-CCeEEEEeccccc--HhhcCEEEEEECCeeeec
Confidence 9999999999999999999999999999999999999999998765 9999999999875 578999999999999999
Q ss_pred cChHHHHH
Q 008534 378 GKASEAMA 385 (562)
Q Consensus 378 G~~~el~~ 385 (562)
|++.+++.
T Consensus 554 G~~~~Ll~ 561 (573)
T COG4987 554 GTHAELLA 561 (573)
T ss_pred CCHHhhhc
Confidence 99999875
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-45 Score=445.31 Aligned_cols=347 Identities=20% Similarity=0.248 Sum_probs=231.0
Q ss_pred HHHHHHHHHHHHHHHhhcCCCccccccccCCCCcchhhhhhhhhhhcCCCcccccccceeeeeecccccccccccccchh
Q 008534 10 LARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSGA 89 (562)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 89 (562)
..+..++..++..+.++|++++.+||++|+++..+.++|.+.+......+.+.....+.+.........-..+..+++|+
T Consensus 224 ~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~f~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~l~~~~G~ 303 (1466)
T PTZ00265 224 NKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTILKKFNLSEKLYSKYILKANFMESLHIGMINGFILASYAFGFWYGT 303 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHhChHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445666688999999999999999999999999999987665554433322221111111111111111233456777
Q ss_pred hhhhhhh--------hhhhhhcccccCC----------------CCccccccCCCCCCCCCccccccccCCCCCCCCCCC
Q 008534 90 ALSRASS--------ASLGLSFSFTGFT----------------MPPDEIADSKPFSDDDIPEDIEAGTRERPKFQTEPT 145 (562)
Q Consensus 90 ~~~~~~~--------~~~g~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (562)
.++..+. .+.|.++++.... +.....+..+.+...+..+.++... .....+.
T Consensus 304 ~lv~~g~~~~~~~~~~t~g~v~~~~~~~l~~~~~l~~i~~~~~~~~~a~~a~~ri~~ii~~~~~~~~~~----~~~~~~~ 379 (1466)
T PTZ00265 304 RIIISDLSNQQPNNDFHGGSVISILLGVLISMFMLTIILPNITEYMKSLEATNSLYEIINRKPLVENND----DGKKLKD 379 (1466)
T ss_pred HHHHcCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCC----CCccCCC
Confidence 6665431 1222222111100 0011111111122111111111100 0001111
Q ss_pred CceeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEE-CCEeCC
Q 008534 146 LPIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITY-NDHPYS 224 (562)
Q Consensus 146 ~~~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i-~G~~~~ 224 (562)
. ..|+|+||+|+|+ ...++++|+|+||+|++||++||+||||||||||+++|+|. ++ +.+|+|++ ||.++.
T Consensus 380 ~-~~I~~~nVsf~Y~-----~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl-~~-p~~G~I~i~~g~~i~ 451 (1466)
T PTZ00265 380 I-KKIQFKNVRFHYD-----TRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERL-YD-PTEGDIIINDSHNLK 451 (1466)
T ss_pred C-CcEEEEEEEEEcC-----CCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHh-cc-CCCCeEEEeCCcchh
Confidence 1 2699999999983 11235799999999999999999999999999999999984 54 45899999 567764
Q ss_pred ----hhccCcEEEEccCCCCCCCCCHHHHHHHHHhhCC----------CC-----------------------------C
Q 008534 225 ----KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRL----------PN-----------------------------T 261 (562)
Q Consensus 225 ----~~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~----------~~-----------------------------~ 261 (562)
..+|++||||+|++.+|+ .||+|||.++..... +. .
T Consensus 452 ~~~~~~lr~~Ig~V~Q~~~LF~-~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 530 (1466)
T PTZ00265 452 DINLKWWRSKIGVVSQDPLLFS-NSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTD 530 (1466)
T ss_pred hCCHHHHHHhccEecccccchh-ccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccc
Confidence 246888999999999997 599999999742100 00 0
Q ss_pred cc---------HHHHHHHHHHHHHHc-------CCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 008534 262 LT---------KQQKEKRAIDVINEL-------GLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSG 325 (562)
Q Consensus 262 ~~---------~~~~~~~v~~~l~~l-------gL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsg 325 (562)
.. ....++.+.++++.+ .|++.+||.+|.. +..|||||||||+|||||+++|+|||||||||+
T Consensus 531 ~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~-g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSa 609 (1466)
T PTZ00265 531 SNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSN-ASKLSGGQKQRISIARAIIRNPKILILDEATSS 609 (1466)
T ss_pred hhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCC-CCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccc
Confidence 00 001123455555544 4567788888754 567999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHH-CCcEEEEEecCCChHHHhcCCEEEEEcCC
Q 008534 326 LDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKG 372 (562)
Q Consensus 326 LD~~~~~~i~~~L~~l~~-~g~Tvii~tH~~~~~i~~~~D~i~vL~~G 372 (562)
||+.++..|.+.|+++.+ .|+|+|+|+|+++. .+.||+|++|++|
T Consensus 610 LD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~--i~~aD~Iivl~~g 655 (1466)
T PTZ00265 610 LDNKSEYLVQKTINNLKGNENRITIIIAHRLST--IRYANTIFVLSNR 655 (1466)
T ss_pred cCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHH--HHhCCEEEEEeCC
Confidence 999999999999999975 58999999999864 4789999999986
|
|
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-43 Score=376.06 Aligned_cols=205 Identities=24% Similarity=0.413 Sum_probs=179.2
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCE----eCCh----h---cc-CcEEEEcc
Q 008534 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDH----PYSK----S---LK-SKIGFVTQ 236 (562)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~----~~~~----~---~~-~~igyV~Q 236 (562)
...+|+|+||+|++||+++|+||||||||||+++|+|.+. +++|+|+++|. ++.. . .| ++|+||+|
T Consensus 36 ~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~--p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ 113 (382)
T TIGR03415 36 LVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNP--VSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQ 113 (382)
T ss_pred CEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEEC
Confidence 4579999999999999999999999999999999999543 56899999996 3321 1 22 57999999
Q ss_pred CCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCE
Q 008534 237 DDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSL 316 (562)
Q Consensus 237 ~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~i 316 (562)
++.+||++||+||+.|+.... ...+.+.+.++.++++.+||.+..+.. +.+|||||||||+|||||+.+|+|
T Consensus 114 ~~~l~p~~Tv~eNi~~~~~~~---g~~~~~~~~~a~e~le~vgL~~~~~~~-----~~~LSgGq~QRV~LARALa~~P~I 185 (382)
T TIGR03415 114 KFALMPWLTVEENVAFGLEMQ---GMPEAERRKRVDEQLELVGLAQWADKK-----PGELSGGMQQRVGLARAFAMDADI 185 (382)
T ss_pred CCcCCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhcCC-----hhhCCHHHHHHHHHHHHHhcCCCE
Confidence 999999999999999986442 234556667889999999998776654 468999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHH
Q 008534 317 LFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (562)
Q Consensus 317 LlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~ 384 (562)
|||||||+|||+.++.++.+.|.++.++ ++|||++||+++ ++.++||+|++|++|++++.|++++++
T Consensus 186 LLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~-e~~~l~DrI~vl~~G~iv~~g~~~ei~ 253 (382)
T TIGR03415 186 LLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLD-EALKIGNRIAIMEGGRIIQHGTPEEIV 253 (382)
T ss_pred EEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 9999999999999999999999999765 899999999976 477899999999999999999999875
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-43 Score=351.91 Aligned_cols=215 Identities=26% Similarity=0.453 Sum_probs=181.7
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh--h
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--S 226 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--~ 226 (562)
+|+++||+++|. .+. .||||+|++|++++|+||||||||||+++|+|... +.+|+|.++|.++.. .
T Consensus 1 ~l~~~~l~~~~~--------~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~ 68 (232)
T PRK10771 1 MLKLTDITWLYH--------HLP--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLT--PASGSLTLNGQDHTTTPP 68 (232)
T ss_pred CeEEEEEEEEEC--------Ccc--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCeecCcCCh
Confidence 378999999982 222 39999999999999999999999999999999543 568999999998753 2
Q ss_pred ccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHH
Q 008534 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (562)
Q Consensus 227 ~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~I 306 (562)
.++.++|++|++.+|+.+|+.||+.++..... .. ......++.++++.+||.+..++. +..||||||||++|
T Consensus 69 ~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~--~~-~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~l 140 (232)
T PRK10771 69 SRRPVSMLFQENNLFSHLTVAQNIGLGLNPGL--KL-NAAQREKLHAIARQMGIEDLLARL-----PGQLSGGQRQRVAL 140 (232)
T ss_pred hhccEEEEecccccccCCcHHHHHhccccccc--CC-CHHHHHHHHHHHHHcCcHHHHhCC-----cccCCHHHHHHHHH
Confidence 34679999999999998999999987532111 11 123455688899999998766654 46899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHH
Q 008534 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (562)
Q Consensus 307 AraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~ 384 (562)
||||+.+|++|||||||+|||+.++..+.+.|+++.++ |+|||++||++. .+.+.||++++|++|++++.|+++++.
T Consensus 141 aral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~g~i~~~g~~~~~~ 218 (232)
T PRK10771 141 ARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLE-DAARIAPRSLVVADGRIAWDGPTDELL 218 (232)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999999999999999998764 899999999975 467889999999999999999988764
|
|
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-43 Score=351.39 Aligned_cols=215 Identities=30% Similarity=0.536 Sum_probs=184.9
Q ss_pred EEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh--hc
Q 008534 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SL 227 (562)
Q Consensus 150 l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--~~ 227 (562)
|+++|+++.|. . ++|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++.. ..
T Consensus 1 l~~~~l~~~~~--------~-~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~--p~~G~v~i~g~~~~~~~~~ 69 (235)
T cd03299 1 LKVENLSKDWK--------E-FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIK--PDSGKILLNGKDITNLPPE 69 (235)
T ss_pred CeeEeEEEEeC--------C-ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCEEcCcCChh
Confidence 46899999881 2 38999999999999999999999999999999999543 568999999998753 23
Q ss_pred cCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHH
Q 008534 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (562)
Q Consensus 228 ~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA 307 (562)
++.++|++|++.+|+.+|+.||+.++.... .....+..+.+.++++.++|.+..++. ++.||||||||++||
T Consensus 70 ~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl~la 141 (235)
T cd03299 70 KRDISYVPQNYALFPHMTVYKNIAYGLKKR---KVDKKEIERKVLEIAEMLGIDHLLNRK-----PETLSGGEQQRVAIA 141 (235)
T ss_pred HcCEEEEeecCccCCCccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHHhcC-----cccCCHHHHHHHHHH
Confidence 568999999999998899999999875332 123344555678899999998766654 468999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHH
Q 008534 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (562)
Q Consensus 308 raLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~ 384 (562)
|||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++. .+.+.||++++|++|++++.|+++++.
T Consensus 142 ral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 218 (235)
T cd03299 142 RALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFE-EAWALADKVAIMLNGKLIQVGKPEEVF 218 (235)
T ss_pred HHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 9999999999999999999999999999999998764 899999999975 467789999999999999999988764
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-43 Score=373.89 Aligned_cols=209 Identities=29% Similarity=0.467 Sum_probs=180.0
Q ss_pred eEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh--------
Q 008534 154 DVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-------- 225 (562)
Q Consensus 154 nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~-------- 225 (562)
||+++| +++. + |+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++..
T Consensus 4 ~l~~~~--------~~~~-~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~--p~~G~I~~~g~~i~~~~~~~~~~ 71 (354)
T TIGR02142 4 RFSKRL--------GDFS-L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTR--PDEGEIVLNGRTLFDSRKGIFLP 71 (354)
T ss_pred EEEEEE--------CCEE-E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECccCccccccc
Confidence 788887 1233 4 9999999999999999999999999999999543 568999999998742
Q ss_pred hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHH
Q 008534 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC 305 (562)
Q Consensus 226 ~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ 305 (562)
..++.++||+|++.+|+++||+||+.|+.... ...+..+++.++++.++|.+..++. +.+|||||||||+
T Consensus 72 ~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~-----~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~LSgGqkqRva 141 (354)
T TIGR02142 72 PEKRRIGYVFQEARLFPHLSVRGNLRYGMKRA-----RPSERRISFERVIELLGIGHLLGRL-----PGRLSGGEKQRVA 141 (354)
T ss_pred hhhCCeEEEecCCccCCCCcHHHHHHHHhhcc-----ChhHHHHHHHHHHHHcCChhHhcCC-----hhhCCHHHHHHHH
Confidence 24567999999999999999999999875321 1233455688999999998766654 5689999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHH
Q 008534 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (562)
Q Consensus 306 IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~ 384 (562)
|||||+.+|++|||||||+|||+.++..+++.|++++++ |+|||++||++. ++..+||+|++|++|++++.|+++++.
T Consensus 142 lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 220 (354)
T TIGR02142 142 IGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQ-EVLRLADRVVVLEDGRVAAAGPIAEVW 220 (354)
T ss_pred HHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEeCCEEEEECCHHHHh
Confidence 999999999999999999999999999999999999765 899999999976 477889999999999999999998875
Q ss_pred H
Q 008534 385 A 385 (562)
Q Consensus 385 ~ 385 (562)
.
T Consensus 221 ~ 221 (354)
T TIGR02142 221 A 221 (354)
T ss_pred c
Confidence 3
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-45 Score=408.41 Aligned_cols=332 Identities=23% Similarity=0.258 Sum_probs=222.0
Q ss_pred HHHHHHHHHHHHHHHhhcCCCccccccccCCCCcchhhhhhhhhhhcCCCcccccccceeeeeecccccccccccccchh
Q 008534 10 LARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSGA 89 (562)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 89 (562)
..++.+++.++..+...|.+...+++|+|+.+..+.++|.+..........+...............+.-..+.-+..|+
T Consensus 171 ~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (529)
T TIGR02857 171 AARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLELFATLSVALVAVYIG 250 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666777788889999999999999999999888886554443221110000000000000000000111112333
Q ss_pred hhhhhhhhhhhhhcccccCCCCc----ccc------------ccCCCCCCCCCccccccccCCCCCCCCCCCCceeEEEE
Q 008534 90 ALSRASSASLGLSFSFTGFTMPP----DEI------------ADSKPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLKFT 153 (562)
Q Consensus 90 ~~~~~~~~~~g~~~~~~~~~~~~----~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 153 (562)
.....+..+.|.++.+..+.... ..+ +..+.....+.+ +...+.....+.....++++
T Consensus 251 ~~~~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~------~~~~~~~~~~~~~~~~i~~~ 324 (529)
T TIGR02857 251 FRLLAGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAP------RPLAGKAPVTAAPAPSLEFS 324 (529)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC------cccCCCcCCCCCCCCeEEEE
Confidence 33335566666666554432111 110 000111111100 00000000001112369999
Q ss_pred eEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCC----hhccC
Q 008534 154 DVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS----KSLKS 229 (562)
Q Consensus 154 nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~----~~~~~ 229 (562)
||+|+|+ ..++++|+|+|++|++|+.++|+||||||||||+++|+|. ++ +.+|+|.+||.++. +.+|+
T Consensus 325 ~v~f~y~------~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~-~~-~~~G~I~~~g~~i~~~~~~~lr~ 396 (529)
T TIGR02857 325 GLSVAYP------GRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGF-VD-PTEGSIAVNGVPLADADADSWRD 396 (529)
T ss_pred EEEEECC------CCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcC-CC-CCCcEEEECCEehhhCCHHHHHh
Confidence 9999983 2235799999999999999999999999999999999984 44 45899999999875 35788
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcC-------CCccccccccCcccCCCChhHHH
Q 008534 230 KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG-------LERCQDTMIGGSFVRGVSGGERK 302 (562)
Q Consensus 230 ~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~t~vg~~~~~~LSGGqrq 302 (562)
+|+||+|++.+|+ .|++|||.++.. ..+++ ++.++++..+ +++.+||.+|+. ...|||||||
T Consensus 397 ~i~~v~Q~~~lf~-~ti~~Ni~~~~~-----~~~~~----~i~~a~~~~~l~~~i~~lp~Gldt~v~e~-g~~LSgGq~q 465 (529)
T TIGR02857 397 QIAWVPQHPFLFA-GTIAENIRLARP-----DASDA----EIRRALERAGLDEFVAALPQGLDTLIGEG-GAGLSGGQAQ 465 (529)
T ss_pred heEEEcCCCcccC-cCHHHHHhccCC-----CCCHH----HHHHHHHHcCcHHHHHhCcccccchhccc-cccCCHHHHH
Confidence 9999999999997 599999998631 12222 2333333333 466789988764 4579999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEE
Q 008534 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL 369 (562)
Q Consensus 303 Rv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL 369 (562)
|++|||||+++|++||||||||+||+.++..+.+.|+++. .++|+|++||+++. .+.||+|++|
T Consensus 466 ri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~--~~~~d~i~~l 529 (529)
T TIGR02857 466 RLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALA-QGRTVLLVTHRLAL--AERADRIVVL 529 (529)
T ss_pred HHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhc-CCCEEEEEecCHHH--HHhCCEEEeC
Confidence 9999999999999999999999999999999999999875 58999999999854 5789999986
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-43 Score=354.88 Aligned_cols=223 Identities=23% Similarity=0.392 Sum_probs=182.8
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC-C--CCccEEEECCEeCCh
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-P--TVGGSITYNDHPYSK 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~-~--~~~G~I~i~G~~~~~ 225 (562)
.-+++||+++| +++++|+|+||+|++||+++|+||||||||||+++|+|.... + +.+|+|+++|+++..
T Consensus 5 ~~~~~~l~~~~--------~~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~ 76 (251)
T PRK14244 5 HASVKNLNLWY--------GSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYS 76 (251)
T ss_pred EEEeeeEEEEE--------CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHh
Confidence 35789999988 245799999999999999999999999999999999996431 2 358999999988642
Q ss_pred ------hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChh
Q 008534 226 ------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (562)
Q Consensus 226 ------~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGG 299 (562)
.+++.++||+|++.+|+. ||+||+.+....+. ...........+.++++.+||.+...+.+ +..+..||||
T Consensus 77 ~~~~~~~~~~~i~~v~q~~~~~~~-tv~~ni~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G 153 (251)
T PRK14244 77 VDTNVVLLRAKVGMVFQKPNPFPK-SIYDNVAYGPKLHG-LAKNKKKLDEIVEKSLTSVGLWEELGDRL-KDSAFELSGG 153 (251)
T ss_pred cccchHHHhhhEEEEecCcccccC-CHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHcCCCchhhhHh-hcChhhCCHH
Confidence 246789999999999985 99999998643321 11122334456778899999865322211 2345789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecC
Q 008534 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (562)
Q Consensus 300 qrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (562)
|||||+|||||+.+|+||||||||+|||+.++..+.+.|+++.+ |+|||++||++. .+.+.||+|++|++|++++.|+
T Consensus 154 q~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~~~-~~~~~~d~i~~l~~G~i~~~~~ 231 (251)
T PRK14244 154 QQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKK-NFTIIVVTHSMK-QAKKVSDRVAFFQSGRIVEYNT 231 (251)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHhhcCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999864 899999999976 4677899999999999999999
Q ss_pred hHHHH
Q 008534 380 ASEAM 384 (562)
Q Consensus 380 ~~el~ 384 (562)
++++.
T Consensus 232 ~~~~~ 236 (251)
T PRK14244 232 TQEIF 236 (251)
T ss_pred HHHHh
Confidence 88764
|
|
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-43 Score=353.34 Aligned_cols=223 Identities=25% Similarity=0.378 Sum_probs=182.1
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC---CccEEEECCEeCCh
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPT---VGGSITYNDHPYSK 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~---~~G~I~i~G~~~~~ 225 (562)
.|+++||++.| +++++|+|+||+|++||+++|+||||||||||+++|+|.+...+ .+|+|.++|.++..
T Consensus 4 ~l~~~~l~~~~--------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~ 75 (252)
T PRK14272 4 LLSAQDVNIYY--------GDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYG 75 (252)
T ss_pred EEEEeeeEEEE--------CCEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEccc
Confidence 68999999998 24579999999999999999999999999999999999653212 37999999998742
Q ss_pred ------hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChh
Q 008534 226 ------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (562)
Q Consensus 226 ------~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGG 299 (562)
.+++.++|++|++.+|+.+|+.||+.++..... ...++...+.+.+.++.+++.+..... .+..+..||||
T Consensus 76 ~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~-~~~~~~~LS~G 152 (252)
T PRK14272 76 PRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAG--IRDRDHLMEVAERSLRGAALWDEVKDR-LKTPATGLSGG 152 (252)
T ss_pred CccCHHHhhceeEEEeccCccCcCCCHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCcchhhhhh-hcCCcccCCHH
Confidence 345679999999999998999999987653221 112233345566677777653211111 12345789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecC
Q 008534 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (562)
Q Consensus 300 qrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (562)
||||++|||||+.+|+||||||||+|||+.++..+.+.|+++++ ++|||++||++. .+...||+|++|++|++++.|+
T Consensus 153 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~ 230 (252)
T PRK14272 153 QQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKK-VTTIIIVTHNMH-QAARVSDTTSFFLVGDLVEHGP 230 (252)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999864 799999999976 4677899999999999999999
Q ss_pred hHHHH
Q 008534 380 ASEAM 384 (562)
Q Consensus 380 ~~el~ 384 (562)
++++.
T Consensus 231 ~~~~~ 235 (252)
T PRK14272 231 TDQLF 235 (252)
T ss_pred HHHHH
Confidence 98874
|
|
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-43 Score=353.50 Aligned_cols=222 Identities=24% Similarity=0.444 Sum_probs=184.2
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC-C--CCccEEEECCEeCCh
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-P--TVGGSITYNDHPYSK 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~-~--~~~G~I~i~G~~~~~ 225 (562)
+|+++||++.| .++++|+|+||+|++||+++|+||||||||||+++|+|.... | +.+|+|.++|.++..
T Consensus 3 ~l~~~~l~~~~--------~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~ 74 (250)
T PRK14262 3 IIEIENFSAYY--------GEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYD 74 (250)
T ss_pred eEEEEeeEEEe--------CCceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccc
Confidence 58999999998 245799999999999999999999999999999999996432 1 258999999998742
Q ss_pred ------hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChh
Q 008534 226 ------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (562)
Q Consensus 226 ------~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGG 299 (562)
.+++.++|++|++.+|+ +||+||+.++..... .......++.+.++++.+++.+..+.. .+..+.+||||
T Consensus 75 ~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~~~~LS~G 150 (250)
T PRK14262 75 PQLDVTEYRKKVGMVFQKPTPFP-MSIYDNVAFGPRIHG--VKSKHKLDRIVEESLKKAALWDEVKSE-LNKPGTRLSGG 150 (250)
T ss_pred chhhHHHhhhhEEEEecCCccCc-ccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCCchhHHH-HhCChhhcCHH
Confidence 34677999999999997 899999998753321 112333445677888888885422111 23456789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecC
Q 008534 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (562)
Q Consensus 300 qrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (562)
||||++|||||+.+|+||||||||+|||+.++..+.+.|+++++ ++|||++||++. .+..+||+|++|++|++++.|+
T Consensus 151 q~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tili~sH~~~-~~~~~~d~i~~l~~G~i~~~g~ 228 (250)
T PRK14262 151 QQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE-NYTIVIVTHNIG-QAIRIADYIAFMYRGELIEYGP 228 (250)
T ss_pred HHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc-CcEEEEEeCCHH-HHHHhCCEEEEEECCEEEEecC
Confidence 99999999999999999999999999999999999999999875 789999999976 4678899999999999999999
Q ss_pred hHHHH
Q 008534 380 ASEAM 384 (562)
Q Consensus 380 ~~el~ 384 (562)
++++.
T Consensus 229 ~~~~~ 233 (250)
T PRK14262 229 TREIV 233 (250)
T ss_pred HHHHH
Confidence 98874
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-43 Score=358.81 Aligned_cols=221 Identities=23% Similarity=0.392 Sum_probs=182.0
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC---CCCccEEEECCEeCC
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME---PTVGGSITYNDHPYS 224 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~---~~~~G~I~i~G~~~~ 224 (562)
..|+++||+++| .++.+|+|+||+|++||+++|+||||||||||+++|+|.... .+++|+|.++|.++.
T Consensus 12 ~~l~i~nl~~~~--------~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~ 83 (269)
T PRK14259 12 IIISLQNVTISY--------GTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLY 83 (269)
T ss_pred ceEEEEeEEEEE--------CCEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcc
Confidence 479999999998 245799999999999999999999999999999999996431 146899999999863
Q ss_pred ------hhccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCCh
Q 008534 225 ------KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSG 298 (562)
Q Consensus 225 ------~~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSG 298 (562)
..+++.++||+|++.+|+ .||+||+.++...+ .... ..++++.++++.+++....... -+..+..|||
T Consensus 84 ~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~---~~~~-~~~~~~~~~l~~~~l~~~l~~~-~~~~~~~LS~ 157 (269)
T PRK14259 84 DPRVDPVEVRRRIGMVFQQPNPFP-KSIYENIAFGARIN---GYTG-DMDELVERSLRKAAVWDECKDK-LNESGYSLSG 157 (269)
T ss_pred cccCCHHHHhhceEEEccCCccch-hhHHHHHhhhhhhc---CCcH-HHHHHHHHHHHHhCCcchhhhh-hCCCcccCCH
Confidence 234667999999999998 59999999876432 1122 2344567788888774321111 1334578999
Q ss_pred hHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcC-------
Q 008534 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK------- 371 (562)
Q Consensus 299 GqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~------- 371 (562)
||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++. .+..+||++++|++
T Consensus 158 G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l~~~~~~~~~ 235 (269)
T PRK14259 158 GQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKK-NFTIVIVTHNMQ-QAVRVSDMTAFFNAEEVEGGS 235 (269)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCEEEEEecccccccc
Confidence 999999999999999999999999999999999999999999864 789999999975 47789999999996
Q ss_pred ----CeEEEecChHHHH
Q 008534 372 ----GSLLYFGKASEAM 384 (562)
Q Consensus 372 ----G~iv~~G~~~el~ 384 (562)
|++++.|+++++.
T Consensus 236 ~g~~g~~~~~~~~~~~~ 252 (269)
T PRK14259 236 GGKVGYLVEFNETKKIF 252 (269)
T ss_pred ccccceEEEeCCHHHHH
Confidence 6799999998875
|
|
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-43 Score=358.52 Aligned_cols=226 Identities=20% Similarity=0.419 Sum_probs=185.5
Q ss_pred eEEEEeEEEEEeeccc-CCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh--
Q 008534 149 YLKFTDVTYKVILKGM-TSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~-~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~-- 225 (562)
+|+++||+++|..+.- .....+++|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++..
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~ 81 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE--PTSGELLIDDHPLHFGD 81 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCC--CCCCEEEECCEECCCCc
Confidence 6999999999831000 00013579999999999999999999999999999999999643 568999999998752
Q ss_pred --hccCcEEEEccCCC--CCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCC-ccccccccCcccCCCChhH
Q 008534 226 --SLKSKIGFVTQDDV--LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVSGGE 300 (562)
Q Consensus 226 --~~~~~igyV~Q~~~--l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~~LSGGq 300 (562)
..++.++||+|++. +++.+||.+++.+...... ........+++.++++.++|. +..+. .+..|||||
T Consensus 82 ~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~~LS~G~ 154 (267)
T PRK15112 82 YSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNT--DLEPEQREKQIIETLRQVGLLPDHASY-----YPHMLAPGQ 154 (267)
T ss_pred hhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCCChHHHhc-----CchhcCHHH
Confidence 23457999999975 6778899999988654321 123344456788899999994 44444 346899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecC
Q 008534 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (562)
Q Consensus 301 rqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (562)
||||+|||||+.+|+||||||||+|||+.++..+.+.|++++++ |+|||++||++. .+..+||++++|++|++++.|+
T Consensus 155 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~-~~~~~~d~i~~l~~G~i~~~~~ 233 (267)
T PRK15112 155 KQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLG-MMKHISDQVLVMHQGEVVERGS 233 (267)
T ss_pred HHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHhcCEEEEEECCEEEecCC
Confidence 99999999999999999999999999999999999999999764 899999999975 4677899999999999999999
Q ss_pred hHHHH
Q 008534 380 ASEAM 384 (562)
Q Consensus 380 ~~el~ 384 (562)
++++.
T Consensus 234 ~~~~~ 238 (267)
T PRK15112 234 TADVL 238 (267)
T ss_pred HHHHh
Confidence 88764
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-45 Score=445.89 Aligned_cols=217 Identities=23% Similarity=0.356 Sum_probs=183.3
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCC---
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS--- 224 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~--- 224 (562)
..|+|+||+|+|. ...++||+||||+|+|||.+||+|+||||||||+++|.| +++| .+|+|.+||.++.
T Consensus 1236 g~I~f~nVsf~Y~------~~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~r-l~~p-~~G~I~IDG~dI~~i~ 1307 (1622)
T PLN03130 1236 GSIKFEDVVLRYR------PELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFR-IVEL-ERGRILIDGCDISKFG 1307 (1622)
T ss_pred CcEEEEEEEEEeC------CCCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhC-cCCC-CCceEEECCEecccCC
Confidence 4699999999992 123579999999999999999999999999999999996 5554 5899999999986
Q ss_pred -hhccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHH-----HHHHHHHHHcCCCccccccccCcccCCCCh
Q 008534 225 -KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKE-----KRAIDVINELGLERCQDTMIGGSFVRGVSG 298 (562)
Q Consensus 225 -~~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~-----~~v~~~l~~lgL~~~~~t~vg~~~~~~LSG 298 (562)
+.+|++|+||||||.+|+. ||+|||.++. ..++++.. ..+++.++ .+++.+||.+|+. ...|||
T Consensus 1308 l~~LR~~IsiVpQdp~LF~G-TIreNLd~~~------~~tdeei~~Al~~a~l~~~I~--~lp~GLdt~Vge~-G~nLSg 1377 (1622)
T PLN03130 1308 LMDLRKVLGIIPQAPVLFSG-TVRFNLDPFN------EHNDADLWESLERAHLKDVIR--RNSLGLDAEVSEA-GENFSV 1377 (1622)
T ss_pred HHHHHhccEEECCCCccccc-cHHHHhCcCC------CCCHHHHHHHHHHcCcHHHHH--hCccccCccccCC-CCCCCH
Confidence 3678999999999999975 9999998642 12222211 12233333 3467789999864 457999
Q ss_pred hHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEec
Q 008534 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (562)
Q Consensus 299 GqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G 378 (562)
|||||++|||||+++|+|||||||||+||+.++..|.+.|++.. +++|+|+|+|++++ ...||+|+||++|+|++.|
T Consensus 1378 GQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~-~~~TvI~IAHRL~t--I~~~DrIlVLd~G~IvE~G 1454 (1622)
T PLN03130 1378 GQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNT--IIDCDRILVLDAGRVVEFD 1454 (1622)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEeCChHH--HHhCCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999999999999999875 48999999999875 4569999999999999999
Q ss_pred ChHHHHH
Q 008534 379 KASEAMA 385 (562)
Q Consensus 379 ~~~el~~ 385 (562)
+|+++++
T Consensus 1455 t~~eLl~ 1461 (1622)
T PLN03130 1455 TPENLLS 1461 (1622)
T ss_pred CHHHHHh
Confidence 9999974
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-43 Score=346.76 Aligned_cols=209 Identities=26% Similarity=0.477 Sum_probs=177.4
Q ss_pred EEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh--hc
Q 008534 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SL 227 (562)
Q Consensus 150 l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--~~ 227 (562)
++++||++.|. .+++|+||++++|++++|+||||||||||+++|+|.+. +.+|+|.++|.++.. ..
T Consensus 1 ~~~~~l~~~~~----------~~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~ 68 (213)
T TIGR01277 1 LALDKVRYEYE----------HLPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIE--PASGSIKVNDQSHTGLAPY 68 (213)
T ss_pred CeEEeeeEEeC----------CcceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEcccCChh
Confidence 46899999871 14689999999999999999999999999999999653 568999999998753 34
Q ss_pred cCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHH
Q 008534 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (562)
Q Consensus 228 ~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA 307 (562)
++.++||+|++.+|+.+|+.||+.+...... . .....+.++.++++.+||.+..++. ++.||||||||++||
T Consensus 69 ~~~i~~v~q~~~~~~~~t~~en~~~~~~~~~--~-~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl~la 140 (213)
T TIGR01277 69 QRPVSMLFQENNLFAHLTVRQNIGLGLHPGL--K-LNAEQQEKVVDAAQQVGIADYLDRL-----PEQLSGGQRQRVALA 140 (213)
T ss_pred ccceEEEeccCccCCCCcHHHHHHhHhhccC--C-ccHHHHHHHHHHHHHcCcHHHhhCC-----cccCCHHHHHHHHHH
Confidence 6779999999999998999999987643211 1 1122345678899999997666554 568999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecC
Q 008534 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (562)
Q Consensus 308 raLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (562)
|||+.+|+||||||||+|||+.++..+.+.|+++.++ |.|||++||++. .+.+.||++++|++|++++.|.
T Consensus 141 ral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~-~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 141 RCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLS-DARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCeEEEEECCeEEEecC
Confidence 9999999999999999999999999999999999764 899999999975 4667899999999999999874
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-45 Score=386.48 Aligned_cols=360 Identities=26% Similarity=0.333 Sum_probs=269.4
Q ss_pred HHHHHHHHHHhhcCCCccccccccCCCCcchhhhhhhhhhhcCCCcccccccceeeeeecccccccccccccchhhhhhh
Q 008534 15 SDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSGAALSRA 94 (562)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 94 (562)
++.....+..++-+.-+.++|+|-+-.+...++..+.-...++..+.-.-..|.+.-.||.+-+.+|.--+..|+-++--
T Consensus 191 ~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~rW~~~~~~~L~~~~~asd~~~~~~~~Sr~~Rm~lQs~iLg~GA~Lvi~ 270 (580)
T COG4618 191 SEASIRANQLADATLRNAEVIEAMGMLGNLAKRWGRFNAAYLSAQERASDRNGAFGALSRALRMALQSAVLGLGAWLVIK 270 (580)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcceeeEEc
Confidence 45555555666666677788988888888888777655554444333223334444447777788888777899999999
Q ss_pred hhhhhhhhcccccC---CCCccccccC--CC-----CCCCCCccccccccCCCCCCCCCCCCceeEEEEeEEEEEeeccc
Q 008534 95 SSASLGLSFSFTGF---TMPPDEIADS--KP-----FSDDDIPEDIEAGTRERPKFQTEPTLPIYLKFTDVTYKVILKGM 164 (562)
Q Consensus 95 ~~~~~g~~~~~~~~---~~~~~~~~~~--~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~nvs~~y~~~~~ 164 (562)
+..+.|+++.=+-+ .+.+.+..-. +. .++.++.+-+...+... ..+..|.....|.++++++.
T Consensus 271 ge~t~G~mIA~SIl~gRaLaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~~~-~~m~LP~P~g~L~Ve~l~~~------ 343 (580)
T COG4618 271 GEITPGMMIAGSILSGRALAPIDLAIANWKQFVAARQSYKRLNELLAELPAAA-ERMPLPAPQGALSVERLTAA------ 343 (580)
T ss_pred CcCCcchhhHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccc-CCCCCCCCCceeeEeeeeec------
Confidence 98888887654332 1222221100 00 12222233333322221 22344444568999999983
Q ss_pred CCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh----hccCcEEEEccCCCC
Q 008534 165 TSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVL 240 (562)
Q Consensus 165 ~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~----~~~~~igyV~Q~~~l 240 (562)
+++.++++|+|+||.+.+||.++|+||||||||||.|+|.|.. ++.+|.|.+||-++.. .+-++|||+||+-.|
T Consensus 344 PPg~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w--~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeL 421 (580)
T COG4618 344 PPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIW--PPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVEL 421 (580)
T ss_pred CCCCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHccc--ccCCCcEEecchhhhcCCHHHhccccCcCccccee
Confidence 4667789999999999999999999999999999999999954 3568999999998863 456889999999999
Q ss_pred CCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEe
Q 008534 241 FPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLD 320 (562)
Q Consensus 241 ~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLD 320 (562)
|+. ||.|||.-....-.++.+-+..+.+.++|++- .|++.+||.+|+.. ..||||||||+++||||..+|.+++||
T Consensus 422 F~G-TIaeNIaRf~~~~d~~kIieAA~lAgvHelIl--~lP~GYdT~iG~~G-~~LSgGQRQRIaLARAlYG~P~lvVLD 497 (580)
T COG4618 422 FDG-TIAENIARFGEEADPEKVIEAARLAGVHELIL--RLPQGYDTRIGEGG-ATLSGGQRQRIALARALYGDPFLVVLD 497 (580)
T ss_pred cCC-cHHHHHHhccccCCHHHHHHHHHHcChHHHHH--hCcCCccCccCCCC-CCCCchHHHHHHHHHHHcCCCcEEEec
Confidence 986 99999973321111122333445556788874 56999999999754 679999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHHHHHHh
Q 008534 321 EPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSS 389 (562)
Q Consensus 321 EPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~~~f~~ 389 (562)
||-|+||...+..+.+.|.+++++|.|+|+|+|+|+ +...+|+|++|++|++-.+|+.+|++.....
T Consensus 498 EPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs--~L~~~Dkilvl~~G~~~~FG~r~eVLa~~~~ 564 (580)
T COG4618 498 EPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPS--ALASVDKILVLQDGRIAAFGPREEVLAKVLR 564 (580)
T ss_pred CCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHH--HHhhcceeeeecCChHHhcCCHHHHHHHhcC
Confidence 999999999999999999999999999999999987 5788999999999999999999999987643
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-43 Score=390.87 Aligned_cols=220 Identities=22% Similarity=0.334 Sum_probs=188.0
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC-CCccEEEECCEeCCh--
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP-TVGGSITYNDHPYSK-- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~-~~~G~I~i~G~~~~~-- 225 (562)
+|+++||+++| +++++|+||||+|++||+++|+||||||||||+|+|+|.+. | +.+|+|.++|.++..
T Consensus 5 ~l~~~nl~~~~--------~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-~~~~~G~i~~~g~~~~~~~ 75 (506)
T PRK13549 5 LLEMKNITKTF--------GGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYP-HGTYEGEIIFEGEELQASN 75 (506)
T ss_pred eEEEeeeEEEe--------CCeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC-CCCCCeEEEECCEECCCCC
Confidence 69999999998 24579999999999999999999999999999999999653 3 368999999998742
Q ss_pred ---hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHH
Q 008534 226 ---SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (562)
Q Consensus 226 ---~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrq 302 (562)
..++.+|||+|++.+++.+||+||+.++...+...........+++.++++.+++.+..++. +.+|||||||
T Consensus 76 ~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgGqkq 150 (506)
T PRK13549 76 IRDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATP-----VGNLGLGQQQ 150 (506)
T ss_pred HHHHHHCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccc-----hhhCCHHHHH
Confidence 13467999999999999999999999875322101122334456788999999998766654 4689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHH
Q 008534 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (562)
Q Consensus 303 Rv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~e 382 (562)
||+|||||+.+|+||||||||+|||+.++..+.+.|++++++|+|||++||++. .+..+||+|++|++|++++.|++++
T Consensus 151 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~ 229 (506)
T PRK13549 151 LVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLN-EVKAISDTICVIRDGRHIGTRPAAG 229 (506)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHHhcCEEEEEECCEEeeeccccc
Confidence 999999999999999999999999999999999999999877999999999975 4678899999999999999998765
Q ss_pred H
Q 008534 383 A 383 (562)
Q Consensus 383 l 383 (562)
+
T Consensus 230 ~ 230 (506)
T PRK13549 230 M 230 (506)
T ss_pred C
Confidence 4
|
|
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-43 Score=358.92 Aligned_cols=226 Identities=26% Similarity=0.452 Sum_probs=192.5
Q ss_pred EEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC---CCccEEEECCEeCC--
Q 008534 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP---TVGGSITYNDHPYS-- 224 (562)
Q Consensus 150 l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~---~~~G~I~i~G~~~~-- 224 (562)
|+++|++..|... .+...+++||||+|++||++||||.|||||||+.+.|+|.+..+ ..+|+|.++|+++.
T Consensus 2 L~v~nL~v~f~~~----~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l 77 (316)
T COG0444 2 LEVKNLSVSFPTD----AGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSL 77 (316)
T ss_pred ceEeeeEEEEecC----CccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccC
Confidence 6899999988432 23467999999999999999999999999999999999977533 26799999999763
Q ss_pred -h----hc-cCcEEEEccCC--CCCCCCCHHHHHHHHHhhCCCCCc-cHHHHHHHHHHHHHHcCCCccccccccCcccCC
Q 008534 225 -K----SL-KSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTL-TKQQKEKRAIDVINELGLERCQDTMIGGSFVRG 295 (562)
Q Consensus 225 -~----~~-~~~igyV~Q~~--~l~~~lTV~enl~~~~~~~~~~~~-~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~ 295 (562)
+ .+ .+.|+||||+| .|.|-+||.+.+.-...... .. .+++..+++.++|+.+||++... +.+.++++
T Consensus 78 ~~~~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~--~~~~~~ea~~~a~~~L~~Vgi~~~~~--~~~~YPhe 153 (316)
T COG0444 78 SEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHG--KGLSKKEAKERAIELLELVGIPDPER--RLKSYPHE 153 (316)
T ss_pred CHHHHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhh--cchhhHHHHHHHHHHHHHcCCCCHHH--HHhhCCcc
Confidence 2 22 35799999997 58889999999887665432 12 35566778999999999986422 34678999
Q ss_pred CChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCcEEEEEecCCChHHHhcCCEEEEEcCCeE
Q 008534 296 VSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374 (562)
Q Consensus 296 LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~i 374 (562)
|||||||||.||.||+.+|+|||.||||++||...+.+|+++|+++.+ .|.++|+||||+. .+.++||||+||..|+|
T Consensus 154 lSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~-vva~~aDri~VMYaG~i 232 (316)
T COG0444 154 LSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLG-VVAEIADRVAVMYAGRI 232 (316)
T ss_pred cCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcceEEEEECcEE
Confidence 999999999999999999999999999999999999999999999986 5999999999986 47899999999999999
Q ss_pred EEecChHHHH
Q 008534 375 LYFGKASEAM 384 (562)
Q Consensus 375 v~~G~~~el~ 384 (562)
|+.|+.+++.
T Consensus 233 VE~g~~~~i~ 242 (316)
T COG0444 233 VEEGPVEEIF 242 (316)
T ss_pred EEeCCHHHHh
Confidence 9999999875
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-43 Score=355.04 Aligned_cols=222 Identities=24% Similarity=0.395 Sum_probs=182.0
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC-CC--CCccEEEECCEeCCh
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLM-EP--TVGGSITYNDHPYSK 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~-~~--~~~G~I~i~G~~~~~ 225 (562)
.|+++|++++| +++.+|+|+||+|++||+++|+||||||||||+++|+|... .+ +.+|+|.++|+++..
T Consensus 21 ~l~~~~l~~~~--------~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~ 92 (268)
T PRK14248 21 ILEVKDLSIYY--------GEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILD 92 (268)
T ss_pred eEEEEEEEEEe--------CCceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEccc
Confidence 69999999998 24579999999999999999999999999999999999542 12 468999999998742
Q ss_pred ------hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChh
Q 008534 226 ------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (562)
Q Consensus 226 ------~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGG 299 (562)
.+++.++|++|++.+|+. |++||+.++..... .......+..+.+.++.+++.+..... -+..+..||||
T Consensus 93 ~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~~~~LSgG 168 (268)
T PRK14248 93 SNINVVNLRREIGMVFQKPNPFPK-SIYNNITHALKYAG--ERRKSVLDEIVEESLTKAALWDEVKDR-LHSSALSLSGG 168 (268)
T ss_pred ccccHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCCcchHHH-HhcCcccCCHH
Confidence 346679999999999985 99999998643221 111223345567788888875321111 12345789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecC
Q 008534 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (562)
Q Consensus 300 qrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (562)
||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++. .+.+.||+|++|++|++++.|+
T Consensus 169 q~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~v~~l~~G~i~~~~~ 246 (268)
T PRK14248 169 QQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE-EYSIIIVTHNMQ-QALRVSDRTAFFLNGDLVEYDQ 246 (268)
T ss_pred HHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEEeCHH-HHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999965 689999999975 4678899999999999999999
Q ss_pred hHHHH
Q 008534 380 ASEAM 384 (562)
Q Consensus 380 ~~el~ 384 (562)
++++.
T Consensus 247 ~~~~~ 251 (268)
T PRK14248 247 TEQIF 251 (268)
T ss_pred HHHHH
Confidence 88764
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-43 Score=351.52 Aligned_cols=222 Identities=24% Similarity=0.411 Sum_probs=182.2
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC-C--CCccEEEECCEeCCh
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-P--TVGGSITYNDHPYSK 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~-~--~~~G~I~i~G~~~~~ 225 (562)
.|+++||+++| +.+++|+|+||+|++||+++|+||||||||||+++|+|...+ | +.+|+|.++|+++..
T Consensus 4 ~l~~~~l~~~~--------~~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~ 75 (251)
T PRK14251 4 IISAKDVHLSY--------GNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYG 75 (251)
T ss_pred eEEEEeeEEEE--------CCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEccc
Confidence 58999999998 235799999999999999999999999999999999996532 2 358999999998631
Q ss_pred ------hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChh
Q 008534 226 ------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (562)
Q Consensus 226 ------~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGG 299 (562)
.+++.++||+|++.+|+ .||+||+.++..... ....+...+++.++++.+++...... ..+..+.+||||
T Consensus 76 ~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~~~~~LS~G 151 (251)
T PRK14251 76 SKMDLVELRKEVGMVFQQPTPFP-FSVYDNVAYGLKIAG--VKDKELIDQRVEESLKQAAIWKETKD-NLDRNAQAFSGG 151 (251)
T ss_pred ccchHHHhhccEEEEecCCccCC-CcHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCCcchHH-HhccChhhCCHH
Confidence 24667999999999986 799999988653221 11122334567788888888421110 012345789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecC
Q 008534 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (562)
Q Consensus 300 qrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (562)
||||++|||||+.+|++|||||||+|||+.++..+.+.|+++.+ +.|||++||++. .+.+.||+|++|++|++++.|+
T Consensus 152 q~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~~~-~~~~~~d~i~~l~~G~i~~~~~ 229 (251)
T PRK14251 152 QQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKH-QYTFIMVTHNLQ-QAGRISDQTAFLMNGDLIEAGP 229 (251)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHc-CCeEEEEECCHH-HHHhhcCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999864 789999999976 4677899999999999999999
Q ss_pred hHHHH
Q 008534 380 ASEAM 384 (562)
Q Consensus 380 ~~el~ 384 (562)
++++.
T Consensus 230 ~~~~~ 234 (251)
T PRK14251 230 TEEMF 234 (251)
T ss_pred HHHHH
Confidence 98764
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-43 Score=353.60 Aligned_cols=214 Identities=31% Similarity=0.544 Sum_probs=172.2
Q ss_pred EEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh----
Q 008534 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (562)
Q Consensus 150 l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~---- 225 (562)
++++||++.|. ...+++|+|+||++++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++..
T Consensus 1 i~~~~l~~~~~------~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~ 72 (237)
T cd03252 1 ITFEHVRFRYK------PDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYV--PENGRVLVDGHDLALADPA 72 (237)
T ss_pred CEEEEEEEecC------CCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCCEEEECCeehHhcCHH
Confidence 46899999872 123579999999999999999999999999999999999653 568999999998642
Q ss_pred hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHH-----HHHHHHHHHHc--CCCccccccccCcccCCCCh
Q 008534 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQK-----EKRAIDVINEL--GLERCQDTMIGGSFVRGVSG 298 (562)
Q Consensus 226 ~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~-----~~~v~~~l~~l--gL~~~~~t~vg~~~~~~LSG 298 (562)
.+++.++|++|++.+|+ .||+||+.+.... ...... ...+.++++.+ ++....+ ..+.+|||
T Consensus 73 ~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~-----~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~-----~~~~~LSg 141 (237)
T cd03252 73 WLRRQVGVVLQENVLFN-RSIRDNIALADPG-----MSMERVIEAAKLAGAHDFISELPEGYDTIVG-----EQGAGLSG 141 (237)
T ss_pred HHhhcEEEEcCCchhcc-chHHHHhhccCCC-----CCHHHHHHHHHHcCcHHHHHhCcccccchhh-----cCCCcCCH
Confidence 34677999999998886 6999999875311 111111 11223444444 3332222 34678999
Q ss_pred hHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEec
Q 008534 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (562)
Q Consensus 299 GqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G 378 (562)
||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ |+|||++||++.. + ..||++++|++|++++.|
T Consensus 142 G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~~-~-~~~d~v~~l~~G~i~~~~ 218 (237)
T cd03252 142 GQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICA-GRTVIIIAHRLST-V-KNADRIIVMEKGRIVEQG 218 (237)
T ss_pred HHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHHH-H-HhCCEEEEEECCEEEEEc
Confidence 999999999999999999999999999999999999999999974 8999999999864 4 569999999999999999
Q ss_pred ChHHHHH
Q 008534 379 KASEAMA 385 (562)
Q Consensus 379 ~~~el~~ 385 (562)
+++++..
T Consensus 219 ~~~~~~~ 225 (237)
T cd03252 219 SHDELLA 225 (237)
T ss_pred CHHHHHh
Confidence 9888653
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-43 Score=351.24 Aligned_cols=221 Identities=22% Similarity=0.388 Sum_probs=181.8
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC----CccEEEECCEeCC
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPT----VGGSITYNDHPYS 224 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~----~~G~I~i~G~~~~ 224 (562)
.|+++||+++| .++.+|+|+||+|++|++++|+||||||||||+++|+|.+. |. .+|+|.++|.++.
T Consensus 4 ~l~~~~l~~~~--------~~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~-~~~~~~~~G~v~~~g~~~~ 74 (251)
T PRK14249 4 KIKIRGVNFFY--------HKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMND-IVSGARLEGAVLLDNENIY 74 (251)
T ss_pred eEEEEEEEEEE--------CCeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC-ccccCCcccEEEECCEEcc
Confidence 58999999998 24569999999999999999999999999999999999653 32 2699999999864
Q ss_pred h------hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCCh
Q 008534 225 K------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSG 298 (562)
Q Consensus 225 ~------~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSG 298 (562)
. .+++.++||+|++.+|+. ||+||+.++...+.. ..++..++.+.++++.+++.+..... .+..+..|||
T Consensus 75 ~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~-~~~~~~~LS~ 150 (251)
T PRK14249 75 SPNLDVVNLRKRVGMVFQQPNPFPK-SIFDNVAFGPRMLGT--TAQSRLDEVVEKSLRQAALWDEVKDN-LHKSGLALSG 150 (251)
T ss_pred ccccChHHhhceEEEEecCCccCcC-cHHHHHhhHHHhcCC--ChhhHHHHHHHHHHHHhCCchhhhhH-hhCCcccCCH
Confidence 2 346789999999999985 999999987543211 11222345567778888875322211 2345678999
Q ss_pred hHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEec
Q 008534 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (562)
Q Consensus 299 GqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G 378 (562)
||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++. +++|||++||++.. +.+.||++++|++|++++.|
T Consensus 151 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tilivsh~~~~-~~~~~d~i~~l~~G~i~~~~ 228 (251)
T PRK14249 151 GQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELK-QNYTIAIVTHNMQQ-AARASDWTGFLLTGDLVEYG 228 (251)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHHH-HHhhCCEEEEEeCCeEEEeC
Confidence 99999999999999999999999999999999999999999985 58999999999764 67889999999999999999
Q ss_pred ChHHHH
Q 008534 379 KASEAM 384 (562)
Q Consensus 379 ~~~el~ 384 (562)
+++++.
T Consensus 229 ~~~~~~ 234 (251)
T PRK14249 229 RTGEIF 234 (251)
T ss_pred CHHHHH
Confidence 988764
|
|
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-43 Score=351.60 Aligned_cols=221 Identities=24% Similarity=0.378 Sum_probs=182.2
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC---CCccEEEECCEeCC-
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP---TVGGSITYNDHPYS- 224 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~---~~~G~I~i~G~~~~- 224 (562)
.++++||++.| +++.+|+|+||+|++||+++|+||||||||||+++|+|..... +.+|+|.++|.++.
T Consensus 3 ~l~~~~l~~~~--------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~ 74 (249)
T PRK14253 3 KFNIENLDLFY--------GENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYG 74 (249)
T ss_pred eEEEeccEEEE--------CCeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEccc
Confidence 58999999998 2457999999999999999999999999999999999964311 35899999998873
Q ss_pred ----hhccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhH
Q 008534 225 ----KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGE 300 (562)
Q Consensus 225 ----~~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGq 300 (562)
...++.++|++|++.+|+ .||.||+.++..... ...+...++++.++++.+++.+...... +..+.+|||||
T Consensus 75 ~~~~~~~~~~i~~~~q~~~~~~-~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~LS~G~ 150 (249)
T PRK14253 75 NIDVADLRIKVGMVFQKPNPFP-MSIYENVAYGLRAQG--IKDKKVLDEVVERSLRGAALWDEVKDRL-KSHAFGLSGGQ 150 (249)
T ss_pred ccchHHHHhheeEEecCCCcCc-ccHHHHHHhHHHhcC--CCchHHHHHHHHHHHHHcCCchhhhHHh-hcCcccCCHHH
Confidence 134677999999999997 799999998643211 1122334456777888888754221111 23457899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecCh
Q 008534 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 380 (562)
Q Consensus 301 rqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~ 380 (562)
||||+|||||+.+|+||||||||+|||+.++..+.+.|+++++ ++|||++||++. .+...||++++|++|++++.|++
T Consensus 151 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~~~~~d~i~~l~~G~i~~~g~~ 228 (249)
T PRK14253 151 QQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK-NYTIVIVTHSMQ-QARRISDRTAFFLMGELVEHDDT 228 (249)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEecCHH-HHHHhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999999976 689999999975 47788999999999999999998
Q ss_pred HHH
Q 008534 381 SEA 383 (562)
Q Consensus 381 ~el 383 (562)
+++
T Consensus 229 ~~~ 231 (249)
T PRK14253 229 QVI 231 (249)
T ss_pred HHH
Confidence 775
|
|
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-43 Score=355.33 Aligned_cols=222 Identities=24% Similarity=0.380 Sum_probs=184.0
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC---CCccEEEECCEeCCh
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP---TVGGSITYNDHPYSK 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~---~~~G~I~i~G~~~~~ 225 (562)
.|+++||+++| +++.+|+|+||+|++||+++|+||||||||||+++|+|.+..+ +.+|+|.++|.++..
T Consensus 25 ~l~~~nl~~~~--------~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~ 96 (272)
T PRK14236 25 ALEVRNLNLFY--------GDKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYD 96 (272)
T ss_pred EEEEEEEEEEE--------CCeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcc
Confidence 69999999998 2357999999999999999999999999999999999965321 368999999998742
Q ss_pred ------hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChh
Q 008534 226 ------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (562)
Q Consensus 226 ------~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGG 299 (562)
.+++.++|++|++.+|+. ||+||+.+...... ...+...++++.++++.+++.+...+.. +..+..||||
T Consensus 97 ~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G 172 (272)
T PRK14236 97 KKVDVAELRRRVGMVFQRPNPFPK-SIYENVVYGLRLQG--INNRRVLDEAVERSLRGAALWDEVKDRL-HENAFGLSGG 172 (272)
T ss_pred cccCHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCChhHHHHh-hCCcccCCHH
Confidence 346789999999999985 99999998753321 1122333456778888888864211111 2345789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecC
Q 008534 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (562)
Q Consensus 300 qrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (562)
|||||+|||||+.+|+||||||||+|||+.++..+.+.|+++++ +.|||++||++. .+.+.||+|++|++|++++.|+
T Consensus 173 q~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l~~G~i~~~g~ 250 (272)
T PRK14236 173 QQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS-KYTIVIVTHNMQ-QAARVSDYTAFMYMGKLVEYGD 250 (272)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEeCCHH-HHHhhCCEEEEEECCEEEecCC
Confidence 99999999999999999999999999999999999999999976 789999999975 4678899999999999999999
Q ss_pred hHHHH
Q 008534 380 ASEAM 384 (562)
Q Consensus 380 ~~el~ 384 (562)
++++.
T Consensus 251 ~~~~~ 255 (272)
T PRK14236 251 TDTLF 255 (272)
T ss_pred HHHHh
Confidence 88764
|
|
| >cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-43 Score=340.06 Aligned_cols=189 Identities=47% Similarity=0.834 Sum_probs=165.2
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhcc
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~ 228 (562)
.|+++|+++.|.. ...++++|+|+||+|++||+++|+||||||||||+++|+|....++.+|+|.++|+++...++
T Consensus 3 ~l~~~~l~~~~~~----~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~ 78 (192)
T cd03232 3 VLTWKNLNYTVPV----KGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQ 78 (192)
T ss_pred EEEEeeeEEEecC----CCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhh
Confidence 5899999999831 111357999999999999999999999999999999999964323568999999998765566
Q ss_pred CcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHH
Q 008534 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGN 308 (562)
Q Consensus 229 ~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAr 308 (562)
+.++|++|++.+++.+||+||+.++... + .|||||||||+|||
T Consensus 79 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~-------------------~------------------~LSgGe~qrv~la~ 121 (192)
T cd03232 79 RSTGYVEQQDVHSPNLTVREALRFSALL-------------------R------------------GLSVEQRKRLTIGV 121 (192)
T ss_pred hceEEecccCccccCCcHHHHHHHHHHH-------------------h------------------cCCHHHhHHHHHHH
Confidence 7899999999999989999999875210 0 59999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcC-CeEEEec
Q 008534 309 EIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK-GSLLYFG 378 (562)
Q Consensus 309 aLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~-G~iv~~G 378 (562)
||+.+|++|||||||+|||+.++..+.+.|+++++.|+|||++||++...+...||+|++|++ |++++.|
T Consensus 122 al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 122 ELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred HHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 999999999999999999999999999999999877899999999986445688999999999 9999876
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-43 Score=351.27 Aligned_cols=222 Identities=27% Similarity=0.402 Sum_probs=182.9
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC-CC--CccEEEECCEeCCh
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-PT--VGGSITYNDHPYSK 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~-~~--~~G~I~i~G~~~~~ 225 (562)
+|+++||+++| +++.+|+|+||+|++||+++|+||||||||||+++|+|.... |. .+|+|.++|.++..
T Consensus 6 ~i~~~~l~~~~--------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~ 77 (253)
T PRK14261 6 ILSTKNLNLWY--------GEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMD 77 (253)
T ss_pred eEEEeeeEEEE--------CCeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccc
Confidence 69999999998 245799999999999999999999999999999999996431 21 47999999998742
Q ss_pred ------hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChh
Q 008534 226 ------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (562)
Q Consensus 226 ------~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGG 299 (562)
..++.++|++|++.+|+. ||+||+.++...+.. ......+..+.++++.+++.+...+. .+..+..||||
T Consensus 78 ~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~-~~~~~~~LS~G 153 (253)
T PRK14261 78 SGADVVALRRKIGMVFQRPNPFPK-SIYENVAYGPRIHGE--KNKKTLDTIVEKSLKGAALWDEVKDR-LHDSALSLSGG 153 (253)
T ss_pred cccchhhhhceEEEEecCCccCcc-cHHHHHHhhHHhcCC--CCHHHHHHHHHHHHHHhcCchhhHHH-hhcChhhCCHH
Confidence 235679999999999984 999999987543211 12233345677888888875322111 12345789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecC
Q 008534 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (562)
Q Consensus 300 qrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (562)
||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++.. +.+.||++++|++|++++.|+
T Consensus 154 ~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~-~~tvii~sh~~~~-~~~~~d~v~~l~~G~i~~~g~ 231 (253)
T PRK14261 154 QQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK-EYTVIIVTHNMQQ-AARVSDYTGFMYLGKLIEFDK 231 (253)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh-CceEEEEEcCHHH-HHhhCCEEEEEECCEEEEcCC
Confidence 99999999999999999999999999999999999999999876 6899999999754 667899999999999999999
Q ss_pred hHHHH
Q 008534 380 ASEAM 384 (562)
Q Consensus 380 ~~el~ 384 (562)
++++.
T Consensus 232 ~~~~~ 236 (253)
T PRK14261 232 TTQIF 236 (253)
T ss_pred HHHHH
Confidence 98764
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-45 Score=441.51 Aligned_cols=215 Identities=22% Similarity=0.347 Sum_probs=182.5
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCC---
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS--- 224 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~--- 224 (562)
..|+|+||+|+|. ...+++|+||||+|+|||.+||+||||||||||+++|.| +++| .+|+|.+||.++.
T Consensus 1233 g~I~f~nVsf~Y~------~~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~r-l~~p-~~G~I~IdG~di~~i~ 1304 (1495)
T PLN03232 1233 GSIKFEDVHLRYR------PGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFR-IVEL-EKGRIMIDDCDVAKFG 1304 (1495)
T ss_pred CcEEEEEEEEEEC------CCCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhC-CCcC-CCceEEECCEEhhhCC
Confidence 3699999999992 123579999999999999999999999999999999997 5554 5899999999986
Q ss_pred -hhccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHc-------CCCccccccccCcccCCC
Q 008534 225 -KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINEL-------GLERCQDTMIGGSFVRGV 296 (562)
Q Consensus 225 -~~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~l-------gL~~~~~t~vg~~~~~~L 296 (562)
+.+|++|+||||||.+|+. |++|||.++. ..+++ ++.++++.. .+++..||.+|+. ...|
T Consensus 1305 ~~~lR~~i~iVpQdp~LF~g-TIr~NL~~~~------~~sde----ei~~al~~a~l~~~I~~lp~GLdt~v~e~-G~~L 1372 (1495)
T PLN03232 1305 LTDLRRVLSIIPQSPVLFSG-TVRFNIDPFS------EHNDA----DLWEALERAHIKDVIDRNPFGLDAEVSEG-GENF 1372 (1495)
T ss_pred HHHHHhhcEEECCCCeeeCc-cHHHHcCCCC------CCCHH----HHHHHHHHcCCHHHHHhCcCCCCceecCC-CCCC
Confidence 3678999999999999985 9999998642 12232 233333333 3466788988864 4569
Q ss_pred ChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEE
Q 008534 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (562)
Q Consensus 297 SGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~ 376 (562)
|||||||++|||||+++|+|||||||||+||+.++..|.+.|++.. +++|+|+|+|++++ ...||+|++|++|+|++
T Consensus 1373 SgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~-~~~TvI~IAHRl~t--i~~~DrIlVL~~G~ivE 1449 (1495)
T PLN03232 1373 SVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEF-KSCTMLVIAHRLNT--IIDCDKILVLSSGQVLE 1449 (1495)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHHH--HHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999875 48999999999865 45699999999999999
Q ss_pred ecChHHHHH
Q 008534 377 FGKASEAMA 385 (562)
Q Consensus 377 ~G~~~el~~ 385 (562)
.|+|+++++
T Consensus 1450 ~Gt~~eLl~ 1458 (1495)
T PLN03232 1450 YDSPQELLS 1458 (1495)
T ss_pred ECCHHHHHh
Confidence 999999874
|
|
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-43 Score=358.18 Aligned_cols=221 Identities=24% Similarity=0.377 Sum_probs=182.5
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC-------CccEEEECCE
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPT-------VGGSITYNDH 221 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~-------~~G~I~i~G~ 221 (562)
+|+++|++++| .++.+|+|+||+|++||+++|+||||||||||+++|+|.+. |. .+|+|.++|.
T Consensus 1 ml~~~nl~~~~--------~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~-p~~~~~~~~~~G~i~~~g~ 71 (272)
T PRK13547 1 MLTADHLHVAR--------RHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLT-GGGAPRGARVTGDVTLNGE 71 (272)
T ss_pred CeEEEEEEEEE--------CCEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CcccccccCCceEEEECCE
Confidence 37899999988 24579999999999999999999999999999999999653 22 1799999999
Q ss_pred eCCh----hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCC-CCccHHHHHHHHHHHHHHcCCCccccccccCcccCCC
Q 008534 222 PYSK----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLP-NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGV 296 (562)
Q Consensus 222 ~~~~----~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~L 296 (562)
++.. .+++.++||+|++.+++.+||+||+.++...... .........+++.++++.++|.+..++ .+..|
T Consensus 72 ~~~~~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~L 146 (272)
T PRK13547 72 PLAAIDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGR-----DVTTL 146 (272)
T ss_pred EcccCCHHHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcC-----CcccC
Confidence 8742 3456689999998765568999999886321100 011112334567889999999765554 35689
Q ss_pred ChhHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEE
Q 008534 297 SGGERKRVCIGNEII---------INPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKL 366 (562)
Q Consensus 297 SGGqrqRv~IAraLl---------~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i 366 (562)
||||||||+|||||+ .+|++|||||||+|||+.++..+.+.|+++.++ |+|||++||++. .+.++||++
T Consensus 147 SgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~-~~~~~~d~i 225 (272)
T PRK13547 147 SGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPN-LAARHADRI 225 (272)
T ss_pred CHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEE
Confidence 999999999999999 599999999999999999999999999999775 899999999975 466789999
Q ss_pred EEEcCCeEEEecChHHHH
Q 008534 367 ILLGKGSLLYFGKASEAM 384 (562)
Q Consensus 367 ~vL~~G~iv~~G~~~el~ 384 (562)
++|++|++++.|+++++.
T Consensus 226 ~~l~~G~i~~~g~~~~~~ 243 (272)
T PRK13547 226 AMLADGAIVAHGAPADVL 243 (272)
T ss_pred EEEECCeEEEecCHHHHc
Confidence 999999999999988763
|
|
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-43 Score=352.66 Aligned_cols=218 Identities=26% Similarity=0.404 Sum_probs=181.7
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEe-----C
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP-----Y 223 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~-----~ 223 (562)
.|+++||++.| .++.+|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|.+ +
T Consensus 6 ~l~~~~l~~~~--------~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~i 75 (258)
T PRK11701 6 LLSVRGLTKLY--------GPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLA--PDAGEVHYRMRDGQLRDL 75 (258)
T ss_pred eEEEeeeEEEc--------CCceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCcccccccc
Confidence 69999999998 23579999999999999999999999999999999999543 568999999987 5
Q ss_pred Ch----h----ccCcEEEEccCCC--CCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCc-cccccccCcc
Q 008534 224 SK----S----LKSKIGFVTQDDV--LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-CQDTMIGGSF 292 (562)
Q Consensus 224 ~~----~----~~~~igyV~Q~~~--l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~t~vg~~~ 292 (562)
.. . .++.++||+|++. +++.+|+.||+.+...... .........++.++++.+++.+ ..++ .
T Consensus 76 ~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~ 148 (258)
T PRK11701 76 YALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVG--ARHYGDIRATAGDWLERVEIDAARIDD-----L 148 (258)
T ss_pred ccCCHHHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhc--cCcHHHHHHHHHHHHHHcCCChhHHhC-----C
Confidence 32 1 2456999999973 6777899999986532211 0112234556788999999963 4444 3
Q ss_pred cCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcC
Q 008534 293 VRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGK 371 (562)
Q Consensus 293 ~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~ 371 (562)
+..|||||||||+|||||+.+|+||||||||+|||+.++..+.+.|++++++ |.|||++||++. .+...||+|++|++
T Consensus 149 ~~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~-~~~~~~d~i~~l~~ 227 (258)
T PRK11701 149 PTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLA-VARLLAHRLLVMKQ 227 (258)
T ss_pred CccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEEEEEEC
Confidence 5789999999999999999999999999999999999999999999998765 899999999975 46678999999999
Q ss_pred CeEEEecChHHHH
Q 008534 372 GSLLYFGKASEAM 384 (562)
Q Consensus 372 G~iv~~G~~~el~ 384 (562)
|++++.|+++++.
T Consensus 228 g~i~~~~~~~~~~ 240 (258)
T PRK11701 228 GRVVESGLTDQVL 240 (258)
T ss_pred CEEEEeCCHHHHh
Confidence 9999999998764
|
|
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-43 Score=341.52 Aligned_cols=195 Identities=37% Similarity=0.672 Sum_probs=165.4
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC-CCccEEEECCEeCCh--
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP-TVGGSITYNDHPYSK-- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~-~~~G~I~i~G~~~~~-- 225 (562)
.+.|+||+|.|+.+ +.++.+|+|+||+|++||+++|+||||||||||+++|+|..... +.+|+|.++|.++..
T Consensus 3 ~~~~~~~~~~~~~~----~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~ 78 (202)
T cd03233 3 TLSWRNISFTTGKG----RSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFA 78 (202)
T ss_pred eEEEEccEEEeccC----CCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccch
Confidence 57899999999532 24668999999999999999999999999999999999964311 568999999998753
Q ss_pred -hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHH
Q 008534 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (562)
Q Consensus 226 -~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 304 (562)
..++.++|++|++.+++.+||+||+.++.... .+ ..+..||||||||+
T Consensus 79 ~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--------------------------~~-----~~~~~LS~Ge~qrl 127 (202)
T cd03233 79 EKYPGEIIYVSEEDVHFPTLTVRETLDFALRCK--------------------------GN-----EFVRGISGGERKRV 127 (202)
T ss_pred hhhcceEEEEecccccCCCCcHHHHHhhhhhhc--------------------------cc-----cchhhCCHHHHHHH
Confidence 35678999999999999899999998753210 12 23468999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEec
Q 008534 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (562)
Q Consensus 305 ~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G 378 (562)
+|||||+.+|+||||||||+|||+.++..+.+.|++++++ +.|+|+++|+...++.+.||++++|++|++++.|
T Consensus 128 ~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 128 SIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred HHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 9999999999999999999999999999999999999765 6777777666445677899999999999998765
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-43 Score=386.92 Aligned_cols=219 Identities=23% Similarity=0.399 Sum_probs=186.9
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
+|+++||+++| +++++|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++..
T Consensus 4 ~i~~~~l~~~~--------~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~~~~ 73 (501)
T PRK10762 4 LLQLKGIDKAF--------PGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYT--RDAGSILYLGKEVTFNGP 73 (501)
T ss_pred eEEEeeeEEEe--------CCeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECCCCCH
Confidence 69999999998 24579999999999999999999999999999999999653 558999999998742
Q ss_pred -h-ccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCC-CCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHH
Q 008534 226 -S-LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLP-NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (562)
Q Consensus 226 -~-~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrq 302 (562)
. .++.++||+|++.+++.+||+||+.++...... .........+++.++++.+||.+..+.. +.+|||||||
T Consensus 74 ~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~q 148 (501)
T PRK10762 74 KSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKL-----VGELSIGEQQ 148 (501)
T ss_pred HHHHhCCEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCc-----hhhCCHHHHH
Confidence 1 246799999999999999999999986432110 1122333455688899999998766654 4689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHH
Q 008534 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (562)
Q Consensus 303 Rv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~e 382 (562)
||+|||||+.+|+||||||||+|||+.++..+++.|+++++.|+|||++||++. .+..+||+|++|++|++++.|++++
T Consensus 149 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~-~~~~~~d~i~~l~~G~i~~~~~~~~ 227 (501)
T PRK10762 149 MVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLK-EIFEICDDVTVFRDGQFIAEREVAD 227 (501)
T ss_pred HHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEeCCEEEEecCcCc
Confidence 999999999999999999999999999999999999999877899999999975 4778999999999999999998765
Q ss_pred H
Q 008534 383 A 383 (562)
Q Consensus 383 l 383 (562)
+
T Consensus 228 ~ 228 (501)
T PRK10762 228 L 228 (501)
T ss_pred C
Confidence 4
|
|
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-42 Score=355.61 Aligned_cols=221 Identities=24% Similarity=0.387 Sum_probs=185.4
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC----CCccEEEECCEeCC
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP----TVGGSITYNDHPYS 224 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~----~~~G~I~i~G~~~~ 224 (562)
.|+++||+++| +++++|+|+||+|++||+++|+||||||||||+++|+|.+. | +.+|+|.++|.++.
T Consensus 21 ~l~i~nl~~~~--------~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~-p~~~~~~~G~i~~~g~~i~ 91 (276)
T PRK14271 21 AMAAVNLTLGF--------AGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMND-KVSGYRYSGDVLLGGRSIF 91 (276)
T ss_pred EEEEeeEEEEE--------CCEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCC-cCCCCCCceEEEECCEEcc
Confidence 68999999998 24579999999999999999999999999999999999653 3 35899999999874
Q ss_pred h-----hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChh
Q 008534 225 K-----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (562)
Q Consensus 225 ~-----~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGG 299 (562)
. .+++.++||+|++.+|+ +||+||+.++..... ..+..+....+.++++.+++.+..++.. +..+..||||
T Consensus 92 ~~~~~~~~~~~i~~v~q~~~l~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~l-~~~~~~LSgG 167 (276)
T PRK14271 92 NYRDVLEFRRRVGMLFQRPNPFP-MSIMDNVLAGVRAHK--LVPRKEFRGVAQARLTEVGLWDAVKDRL-SDSPFRLSGG 167 (276)
T ss_pred ccchhHHHhhheEEeccCCccCC-ccHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCCCchhhhHh-hCCcccCCHH
Confidence 2 34678999999999998 799999998643211 1233344455678889999865332221 2345789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecC
Q 008534 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (562)
Q Consensus 300 qrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (562)
||||++|||||+.+|+||||||||+|||+.++..+.+.|+++++ ++|||++||++. .+.++||++++|++|++++.|+
T Consensus 168 q~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~-~~~~~~dri~~l~~G~i~~~g~ 245 (276)
T PRK14271 168 QQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD-RLTVIIVTHNLA-QAARISDRAALFFDGRLVEEGP 245 (276)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999976 589999999975 4678899999999999999999
Q ss_pred hHHHH
Q 008534 380 ASEAM 384 (562)
Q Consensus 380 ~~el~ 384 (562)
++++.
T Consensus 246 ~~~~~ 250 (276)
T PRK14271 246 TEQLF 250 (276)
T ss_pred HHHHH
Confidence 98874
|
|
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-43 Score=343.39 Aligned_cols=203 Identities=30% Similarity=0.512 Sum_probs=172.5
Q ss_pred EEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh-----
Q 008534 151 KFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----- 225 (562)
Q Consensus 151 ~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~----- 225 (562)
.+ ||+++| +++.+ ||||+|++ |+++|+||||||||||+++|+|.+. +.+|+|.++|.++..
T Consensus 3 ~~-~l~~~~--------~~~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~ 68 (214)
T cd03297 3 CV-DIEKRL--------PDFTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEK--PDGGTIVLNGTVLFDSRKKI 68 (214)
T ss_pred ee-eeeEec--------CCeee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEecccccchh
Confidence 44 888888 23334 99999999 9999999999999999999999653 568999999988641
Q ss_pred ---hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHH
Q 008534 226 ---SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (562)
Q Consensus 226 ---~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrq 302 (562)
..++.++||+|++.+|+.+|++||+.+..... .....++++.++++.+++.+..++ .+..|||||||
T Consensus 69 ~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~q 138 (214)
T cd03297 69 NLPPQQRKIGLVFQQYALFPHLNVRENLAFGLKRK-----RNREDRISVDELLDLLGLDHLLNR-----YPAQLSGGEKQ 138 (214)
T ss_pred hhhhHhhcEEEEecCCccCCCCCHHHHHHHHHhhC-----CHHHHHHHHHHHHHHcCCHhHhhc-----CcccCCHHHHH
Confidence 24567999999999998899999998864321 223345568889999999765554 35689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEec
Q 008534 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (562)
Q Consensus 303 Rv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G 378 (562)
|++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. .+...||++++|++|++++.|
T Consensus 139 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 139 RVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLS-EAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHH-HHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999999999999999999999765 899999999975 466789999999999998875
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-42 Score=353.82 Aligned_cols=223 Identities=22% Similarity=0.414 Sum_probs=181.1
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC-C--CCccEEEECCEeCC
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-P--TVGGSITYNDHPYS 224 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~-~--~~~G~I~i~G~~~~ 224 (562)
..|+++||++.| +++.+|+|+||+|++||+++|+|+||||||||+++|+|.+.. + +.+|+|.++|.++.
T Consensus 23 ~~l~~~~l~~~~--------~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~ 94 (271)
T PRK14238 23 VVFDTQNLNLWY--------GEDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIF 94 (271)
T ss_pred eEEEEeeeEEEE--------CCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcc
Confidence 379999999998 235699999999999999999999999999999999996531 2 46899999999873
Q ss_pred h------hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCCh
Q 008534 225 K------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSG 298 (562)
Q Consensus 225 ~------~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSG 298 (562)
. .+++.++|++|++.+|+ .||+||+.++..... .......+..+.+.++.+++.+...... +..+..|||
T Consensus 95 ~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~l~~~~-~~~~~~LSg 170 (271)
T PRK14238 95 DKSYSVEELRTNVGMVFQKPNPFP-KSIYDNVTYGPKIHG--IKDKKTLDEIVEKSLRGAAIWDELKDRL-HDNAYGLSG 170 (271)
T ss_pred cccccHHHHhhhEEEEecCCcccc-ccHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCcchHHHHH-hcCcccCCH
Confidence 1 34678999999999987 599999998754321 1112223345667777765432111111 234678999
Q ss_pred hHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEec
Q 008534 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (562)
Q Consensus 299 GqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G 378 (562)
|||||++|||||+.+|+||||||||+|||+.++..+.+.|+++++ ++|||++||++. .+..+||++++|++|++++.|
T Consensus 171 Ge~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~i~~~~d~i~~l~~G~i~~~g 248 (271)
T PRK14238 171 GQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKK-DYSIIIVTHNMQ-QAARISDKTAFFLNGYVNEYD 248 (271)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc-CCEEEEEEcCHH-HHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999999976 799999999976 467889999999999999999
Q ss_pred ChHHHH
Q 008534 379 KASEAM 384 (562)
Q Consensus 379 ~~~el~ 384 (562)
+++++.
T Consensus 249 ~~~~~~ 254 (271)
T PRK14238 249 DTDKIF 254 (271)
T ss_pred CHHHHH
Confidence 988763
|
|
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-42 Score=351.33 Aligned_cols=222 Identities=22% Similarity=0.394 Sum_probs=184.5
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC----CccEEEECCEeCC
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPT----VGGSITYNDHPYS 224 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~----~~G~I~i~G~~~~ 224 (562)
.|+++||++.|. .+.+|+|+||+|++||+++|+||||||||||+++|+|... +. .+|+|.++|+++.
T Consensus 7 ~l~~~nl~~~~~--------~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~-~~g~i~~~G~i~~~g~~i~ 77 (261)
T PRK14258 7 AIKVNNLSFYYD--------TQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNE-LESEVRVEGRVEFFNQNIY 77 (261)
T ss_pred eEEEeeEEEEeC--------CeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccC-CCCCccccceEEECCEEhh
Confidence 699999999982 3469999999999999999999999999999999999653 32 3799999998863
Q ss_pred ------hhccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCCh
Q 008534 225 ------KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSG 298 (562)
Q Consensus 225 ------~~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSG 298 (562)
..+++.++|++|++.+|+ +|++||+.+...... ..+..+..+++.++++.+++.+..+.. .+..+..|||
T Consensus 78 ~~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~~~~LSg 153 (261)
T PRK14258 78 ERRVNLNRLRRQVSMVHPKPNLFP-MSVYDNVAYGVKIVG--WRPKLEIDDIVESALKDADLWDEIKHK-IHKSALDLSG 153 (261)
T ss_pred ccccchHHhhccEEEEecCCccCc-ccHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCcchhhhH-hcCCcccCCH
Confidence 134667999999999998 899999988653221 012333345678889999885432211 1345678999
Q ss_pred hHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCcEEEEEecCCChHHHhcCCEEEEEcC-----C
Q 008534 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGK-----G 372 (562)
Q Consensus 299 GqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~Tvii~tH~~~~~i~~~~D~i~vL~~-----G 372 (562)
|||||++|||+|+.+|+||||||||+|||+.++..+.+.|+++++ .|+|||++||++. .+.++||+|++|++ |
T Consensus 154 Gq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~-~i~~~~d~i~~l~~~~~~~G 232 (261)
T PRK14258 154 GQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLH-QVSRLSDFTAFFKGNENRIG 232 (261)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhcCEEEEEccCCCcCc
Confidence 999999999999999999999999999999999999999999865 4899999999975 47789999999999 9
Q ss_pred eEEEecChHHHH
Q 008534 373 SLLYFGKASEAM 384 (562)
Q Consensus 373 ~iv~~G~~~el~ 384 (562)
++++.|+++++.
T Consensus 233 ~i~~~~~~~~~~ 244 (261)
T PRK14258 233 QLVEFGLTKKIF 244 (261)
T ss_pred eEEEeCCHHHHH
Confidence 999999999874
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-42 Score=348.35 Aligned_cols=222 Identities=25% Similarity=0.395 Sum_probs=180.9
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC-CC--CccEEEECCEeCCh
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-PT--VGGSITYNDHPYSK 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~-~~--~~G~I~i~G~~~~~ 225 (562)
+|+++||+++| +.+.+|+|+||+|++||+++|+||||||||||+++|+|.... |. .+|+|.++|.++..
T Consensus 5 ~l~~~~l~~~~--------~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~ 76 (252)
T PRK14255 5 IITSSDVHLFY--------GKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYA 76 (252)
T ss_pred eEEEEeEEEEE--------CCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEccc
Confidence 68999999998 235799999999999999999999999999999999996421 21 48999999998731
Q ss_pred ------hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChh
Q 008534 226 ------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (562)
Q Consensus 226 ------~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGG 299 (562)
.+++.++||+|++.+|+ .||+||+.+....+.. ......++++.+.++.+++....... -+..+.+||||
T Consensus 77 ~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~i~~~-~~~~~~~LS~G 152 (252)
T PRK14255 77 PNEDVVQLRKQVGMVFQQPNPFP-FSIYENVIYGLRLAGV--KDKAVLDEAVETSLKQAAIWDEVKDH-LHESALSLSGG 152 (252)
T ss_pred ccccHHHhcCeEEEEECCCccCC-CcHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHcCCccchhhH-HhcCcccCCHH
Confidence 34567999999999998 6999999987543211 11222234566777777764221111 12345789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecC
Q 008534 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (562)
Q Consensus 300 qrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (562)
||||++|||||+.+|+||||||||+|||+.++..+.+.|+++.+ +.|||++||++. .+.+.||+|++|++|++++.|+
T Consensus 153 q~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~-~~~~~~d~i~~l~~G~i~~~~~ 230 (252)
T PRK14255 153 QQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD-QYTIILVTHSMH-QASRISDKTAFFLTGNLIEFAD 230 (252)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEECCHH-HHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999976 589999999975 4678899999999999999999
Q ss_pred hHHHH
Q 008534 380 ASEAM 384 (562)
Q Consensus 380 ~~el~ 384 (562)
+.++.
T Consensus 231 ~~~~~ 235 (252)
T PRK14255 231 TKQMF 235 (252)
T ss_pred HHHHh
Confidence 88764
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-44 Score=439.45 Aligned_cols=215 Identities=23% Similarity=0.345 Sum_probs=182.2
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh--
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~-- 225 (562)
..|+|+||+|+|+ ...+++|+||||+|+|||.+||+|+||||||||+++|.| +++| .+|+|.+||.|+.+
T Consensus 1283 g~I~f~nVsf~Y~------~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~r-l~~~-~~G~I~IdG~dI~~i~ 1354 (1522)
T TIGR00957 1283 GRVEFRNYCLRYR------EDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFR-INES-AEGEIIIDGLNIAKIG 1354 (1522)
T ss_pred CcEEEEEEEEEeC------CCCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhc-CccC-CCCeEEECCEEccccC
Confidence 4699999999993 123479999999999999999999999999999999996 5654 58999999999863
Q ss_pred --hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcC-------CCccccccccCcccCCC
Q 008534 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG-------LERCQDTMIGGSFVRGV 296 (562)
Q Consensus 226 --~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~t~vg~~~~~~L 296 (562)
.+|++|+||||||.+|+. ||+|||.... ..++++ +.++++..+ +++.+||.+|.. ...|
T Consensus 1355 ~~~LR~~i~iVpQdp~LF~g-TIr~NLdp~~------~~sdee----i~~al~~a~l~~~I~~lp~GLdt~v~e~-G~~L 1422 (1522)
T TIGR00957 1355 LHDLRFKITIIPQDPVLFSG-SLRMNLDPFS------QYSDEE----VWWALELAHLKTFVSALPDKLDHECAEG-GENL 1422 (1522)
T ss_pred HHHHHhcCeEECCCCcccCc-cHHHHcCccc------CCCHHH----HHHHHHHcCcHHHHhhCccCCCceecCC-CCcC
Confidence 679999999999999985 9999997321 123322 333444333 456789998764 4569
Q ss_pred ChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEE
Q 008534 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (562)
Q Consensus 297 SGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~ 376 (562)
|||||||++|||||+++|+|||||||||+||+++...|.+.|++.. +++|||+|+|+++. ...||+|+||++|+|++
T Consensus 1423 SgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~-~~~TvI~IAHRl~t--i~~~DrIlVld~G~IvE 1499 (1522)
T TIGR00957 1423 SVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQF-EDCTVLTIAHRLNT--IMDYTRVIVLDKGEVAE 1499 (1522)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH--HHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999865 48999999999875 46799999999999999
Q ss_pred ecChHHHHH
Q 008534 377 FGKASEAMA 385 (562)
Q Consensus 377 ~G~~~el~~ 385 (562)
.|+|+++++
T Consensus 1500 ~G~~~eLl~ 1508 (1522)
T TIGR00957 1500 FGAPSNLLQ 1508 (1522)
T ss_pred ECCHHHHHh
Confidence 999999975
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-43 Score=386.54 Aligned_cols=219 Identities=25% Similarity=0.390 Sum_probs=186.6
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
+|+++|++++| +++.+|+||||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++..
T Consensus 5 ~l~~~~l~~~~--------~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~i~~~~~ 74 (510)
T PRK09700 5 YISMAGIGKSF--------GPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHE--PTKGTITINNINYNKLDH 74 (510)
T ss_pred eEEEeeeEEEc--------CCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcC--CCccEEEECCEECCCCCH
Confidence 69999999998 24579999999999999999999999999999999999653 568999999998742
Q ss_pred --hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCC-CCC---ccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChh
Q 008534 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRL-PNT---LTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (562)
Q Consensus 226 --~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~-~~~---~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGG 299 (562)
..++.|+||+|++.+++.+||+||+.++..... ... ....+..+++.++++.+||.+..++. +.+||||
T Consensus 75 ~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgG 149 (510)
T PRK09700 75 KLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEK-----VANLSIS 149 (510)
T ss_pred HHHHHCCeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccc-----hhhCCHH
Confidence 124579999999999999999999987542100 001 12334456788999999998766654 4689999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecC
Q 008534 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (562)
Q Consensus 300 qrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (562)
|||||+|||||+.+|+||||||||+|||+.++..+++.|++++++|+|||++||++. .+..+||+|++|++|++++.|+
T Consensus 150 ~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~-~~~~~~d~v~~l~~G~i~~~g~ 228 (510)
T PRK09700 150 HKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLA-EIRRICDRYTVMKDGSSVCSGM 228 (510)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEeeecc
Confidence 999999999999999999999999999999999999999999877999999999975 4678899999999999999999
Q ss_pred hHHH
Q 008534 380 ASEA 383 (562)
Q Consensus 380 ~~el 383 (562)
++++
T Consensus 229 ~~~~ 232 (510)
T PRK09700 229 VSDV 232 (510)
T ss_pred hhhC
Confidence 8764
|
|
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-42 Score=350.59 Aligned_cols=219 Identities=20% Similarity=0.338 Sum_probs=180.3
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC---CCccEEEECCEeCC
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP---TVGGSITYNDHPYS 224 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~---~~~G~I~i~G~~~~ 224 (562)
..|+++||+++| ++++|+|+||+|++||+++|+||||||||||+++|+|... | +++|+|.++|+++.
T Consensus 3 ~~l~~~~l~~~~---------~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-~~~~~~~G~i~~~g~~i~ 72 (254)
T PRK10418 3 QQIELRNIALQA---------AQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILP-AGVRQTAGRVLLDGKPVA 72 (254)
T ss_pred cEEEEeCeEEEe---------ccceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCCCcCCEEEECCeecc
Confidence 469999999987 2469999999999999999999999999999999999653 3 16899999999875
Q ss_pred h-h-ccCcEEEEccCCC--CCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhH
Q 008534 225 K-S-LKSKIGFVTQDDV--LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGE 300 (562)
Q Consensus 225 ~-~-~~~~igyV~Q~~~--l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGq 300 (562)
. . .++.|+||+|++. +.+.+|+.+|+.+.+.... ... .++++.++++.++|.+.. + +-+..+..|||||
T Consensus 73 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~~l~~~~l~~~~-~-~~~~~~~~LS~Gq 145 (254)
T PRK10418 73 PCALRGRKIATIMQNPRSAFNPLHTMHTHARETCLALG---KPA--DDATLTAALEAVGLENAA-R-VLKLYPFEMSGGM 145 (254)
T ss_pred ccccccceEEEEecCCccccCccccHHHHHHHHHHHcC---CCh--HHHHHHHHHHHcCCCChh-h-hhhcCCcccCHHH
Confidence 3 2 2357999999974 4556799999876543211 111 235678899999997521 0 1123457899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecC
Q 008534 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (562)
Q Consensus 301 rqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (562)
||||+|||||+.+|+||||||||+|||+.++..+.+.|++++++ |+|||++||++.. +...||++++|++|++++.|+
T Consensus 146 ~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~-~~~~~d~v~~l~~G~i~~~~~ 224 (254)
T PRK10418 146 LQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGV-VARLADDVAVMSHGRIVEQGD 224 (254)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHH-HHHhCCEEEEEECCEEEEecC
Confidence 99999999999999999999999999999999999999999764 8999999999754 667899999999999999999
Q ss_pred hHHHH
Q 008534 380 ASEAM 384 (562)
Q Consensus 380 ~~el~ 384 (562)
++++.
T Consensus 225 ~~~~~ 229 (254)
T PRK10418 225 VETLF 229 (254)
T ss_pred HHHHh
Confidence 88864
|
|
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-42 Score=350.82 Aligned_cols=222 Identities=22% Similarity=0.422 Sum_probs=183.1
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC-C--CccEEEECCEeCCh
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP-T--VGGSITYNDHPYSK 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~-~--~~G~I~i~G~~~~~ 225 (562)
.|+++||++.| +++.+|+|+||+|++||+++|+|+||||||||+++|+|.+... + .+|+|.++|+++..
T Consensus 7 ~l~~~~l~~~~--------~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~ 78 (259)
T PRK14260 7 AIKVKDLSFYY--------NTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYD 78 (259)
T ss_pred eEEEEEEEEEE--------CCeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccc
Confidence 68999999998 2356999999999999999999999999999999999965321 2 48999999998742
Q ss_pred ------hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChh
Q 008534 226 ------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (562)
Q Consensus 226 ------~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGG 299 (562)
.+++.|+||+|++.+|+ +||+||+.++...+. ...+....+++.++++.+++.+.... ..+..+..||||
T Consensus 79 ~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~-~~~~~~~~LS~G 154 (259)
T PRK14260 79 PRININRLRRQIGMVFQRPNPFP-MSIYENVAYGVRISA--KLPQADLDEIVESALKGAALWQEVKD-KLNKSALGLSGG 154 (259)
T ss_pred cccchHhhhhheEEEecccccCC-ccHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhh-HhcCCcccCCHH
Confidence 34567999999999997 899999988754321 11233344567788888887432111 113356789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEc-----CCeE
Q 008534 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG-----KGSL 374 (562)
Q Consensus 300 qrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~-----~G~i 374 (562)
|||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++. .+.+.||++++|+ +|++
T Consensus 155 ~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~i~~~~d~i~~l~~~~~~~G~i 232 (259)
T PRK14260 155 QQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS-ELTIAIVTHNMQ-QATRVSDFTAFFSTDESRIGQM 232 (259)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCeEEEEeccCCCCceE
Confidence 99999999999999999999999999999999999999999875 689999999976 4778999999998 5999
Q ss_pred EEecChHHHH
Q 008534 375 LYFGKASEAM 384 (562)
Q Consensus 375 v~~G~~~el~ 384 (562)
++.|+++++.
T Consensus 233 ~~~~~~~~~~ 242 (259)
T PRK14260 233 VEFGVTTQIF 242 (259)
T ss_pred EEeCCHHHHh
Confidence 9999999874
|
|
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-42 Score=355.76 Aligned_cols=223 Identities=22% Similarity=0.363 Sum_probs=182.4
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC-CC--CCccEEEECCEeCC
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLM-EP--TVGGSITYNDHPYS 224 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~-~~--~~~G~I~i~G~~~~ 224 (562)
..|+++||+++| .++.+|+|+||+|++||+++|+||||||||||+++|+|... .| +.+|+|.++|.++.
T Consensus 38 ~~l~~~~l~~~~--------~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~ 109 (286)
T PRK14275 38 PHVVAKNFSIYY--------GEFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIY 109 (286)
T ss_pred eEEEEeeeEEEE--------CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhh
Confidence 369999999998 23469999999999999999999999999999999999642 13 36899999998864
Q ss_pred h------hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCCh
Q 008534 225 K------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSG 298 (562)
Q Consensus 225 ~------~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSG 298 (562)
. .+++.++||+|++.+|+. ||.||+.++...... ......++++.++++.+++.+..... .+..+..|||
T Consensus 110 ~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~-~~~~~~~LSg 185 (286)
T PRK14275 110 GKFTDEVLLRKKIGMVFQKPNPFPK-SIFDNIAYGPRLHGI--NDKKQLEEIVEKSLRKAALWDEVSDR-LDKNALGLSG 185 (286)
T ss_pred hcccchHHhhhcEEEECCCCCCCcc-CHHHHHHhHHHhcCC--CcHHHHHHHHHHHHHHhCCccchhhH-hhCChhhCCH
Confidence 2 246789999999999975 999999987543210 11223345677788888874211111 1234578999
Q ss_pred hHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEec
Q 008534 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (562)
Q Consensus 299 GqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G 378 (562)
||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++. .+.++||++++|++|++++.|
T Consensus 186 Gq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tvIivsH~~~-~~~~~~d~i~~L~~G~i~~~g 263 (286)
T PRK14275 186 GQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG-SYTIMIVTHNMQ-QASRVSDYTMFFYEGVLVEHA 263 (286)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999999875 689999999976 467789999999999999999
Q ss_pred ChHHHH
Q 008534 379 KASEAM 384 (562)
Q Consensus 379 ~~~el~ 384 (562)
+++++.
T Consensus 264 ~~~~~~ 269 (286)
T PRK14275 264 PTAQLF 269 (286)
T ss_pred CHHHHH
Confidence 998864
|
|
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-43 Score=347.93 Aligned_cols=199 Identities=34% Similarity=0.492 Sum_probs=170.2
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCC---hhccCcEEEEc-cCCCCCCCC
Q 008534 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---KSLKSKIGFVT-QDDVLFPHL 244 (562)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~---~~~~~~igyV~-Q~~~l~~~l 244 (562)
.+++|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++. ..+++.++|++ |++.+++.+
T Consensus 33 ~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 110 (236)
T cd03267 33 EVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQ--PTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDL 110 (236)
T ss_pred CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCEEccccchhhcccEEEEcCCccccCCCC
Confidence 4679999999999999999999999999999999999543 56899999998753 23466899998 557788889
Q ss_pred CHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCC
Q 008534 245 TVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTS 324 (562)
Q Consensus 245 TV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTs 324 (562)
||+||+.+..... .....+..+++.++++.++|.+..++. +..||||||||++|||||+.+|++|||||||+
T Consensus 111 tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~G~~qrl~la~al~~~p~llllDEPt~ 182 (236)
T cd03267 111 PVIDSFYLLAAIY---DLPPARFKKRLDELSELLDLEELLDTP-----VRQLSLGQRMRAEIAAALLHEPEILFLDEPTI 182 (236)
T ss_pred cHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhcCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCC
Confidence 9999998865432 122334455677889999998777765 46899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEec
Q 008534 325 GLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (562)
Q Consensus 325 gLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G 378 (562)
|||+.++..+.+.|++++++ ++|||++||++. .+..+||++++|++|++++.|
T Consensus 183 ~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 183 GLDVVAQENIRNFLKEYNRERGTTVLLTSHYMK-DIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHH-HHHHhCCEEEEEeCCEEEecC
Confidence 99999999999999999764 799999999975 467889999999999998765
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-42 Score=383.80 Aligned_cols=213 Identities=23% Similarity=0.421 Sum_probs=185.5
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh--
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~-- 225 (562)
..|+++||+++| +++.+|+|+||+|++|++++|+||||||||||+++|+|.+. +.+|+|.++|.++..
T Consensus 10 ~~l~~~~l~~~~--------~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~ 79 (510)
T PRK15439 10 PLLCARSISKQY--------SGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVP--PDSGTLEIGGNPCARLT 79 (510)
T ss_pred ceEEEEeEEEEe--------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECCCCC
Confidence 369999999998 24579999999999999999999999999999999999653 568999999998742
Q ss_pred --h-ccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHH
Q 008534 226 --S-LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (562)
Q Consensus 226 --~-~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrq 302 (562)
. .++.+|||+|++.+++.+||+||+.++... ....++++.++++.++|.+..+.. +.+|||||||
T Consensus 80 ~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~-------~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~q 147 (510)
T PRK15439 80 PAKAHQLGIYLVPQEPLLFPNLSVKENILFGLPK-------RQASMQKMKQLLAALGCQLDLDSS-----AGSLEVADRQ 147 (510)
T ss_pred HHHHHhCCEEEEeccCccCCCCcHHHHhhccccc-------chHHHHHHHHHHHHcCCCccccCC-----hhhCCHHHHH
Confidence 1 234699999999999999999999885311 123345678899999998766654 4689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHH
Q 008534 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (562)
Q Consensus 303 Rv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~e 382 (562)
||+|||||+.+|+||||||||+|||+.++..+.+.|++++++|+|||++||++. .+..+||+|++|++|++++.|++++
T Consensus 148 rv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~-~~~~~~d~i~~l~~G~i~~~g~~~~ 226 (510)
T PRK15439 148 IVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLP-EIRQLADRISVMRDGTIALSGKTAD 226 (510)
T ss_pred HHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEecChHH
Confidence 999999999999999999999999999999999999999878999999999975 4678999999999999999999876
Q ss_pred H
Q 008534 383 A 383 (562)
Q Consensus 383 l 383 (562)
+
T Consensus 227 ~ 227 (510)
T PRK15439 227 L 227 (510)
T ss_pred c
Confidence 5
|
|
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-42 Score=346.61 Aligned_cols=221 Identities=25% Similarity=0.344 Sum_probs=180.8
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
.|+++||++.| .++.+|+||||+|++||+++|+||||||||||+++|+|....++.+|+|.++|.++..
T Consensus 7 ~l~~~~l~~~~--------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~ 78 (252)
T CHL00131 7 ILEIKNLHASV--------NENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEP 78 (252)
T ss_pred eEEEEeEEEEe--------CCEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCCh
Confidence 69999999998 2356999999999999999999999999999999999963223568999999998743
Q ss_pred -hccC-cEEEEccCCCCCCCCCHHHHHHHHHhhCCC----CCccHHHHHHHHHHHHHHcCCCc-cccccccCcccC-CCC
Q 008534 226 -SLKS-KIGFVTQDDVLFPHLTVKETLTYAALLRLP----NTLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVR-GVS 297 (562)
Q Consensus 226 -~~~~-~igyV~Q~~~l~~~lTV~enl~~~~~~~~~----~~~~~~~~~~~v~~~l~~lgL~~-~~~t~vg~~~~~-~LS 297 (562)
..++ .++|++|++.+++.+|+.+|+.+....... ......+..+++.++++.+++.+ ..++. +. .||
T Consensus 79 ~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~~LS 153 (252)
T CHL00131 79 EERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRN-----VNEGFS 153 (252)
T ss_pred hhhheeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccc-----cccCCC
Confidence 1222 488999999999999999999875432100 01112233456778899999963 44443 33 599
Q ss_pred hhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhc-CCEEEEEcCCeEEE
Q 008534 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHK-FDKLILLGKGSLLY 376 (562)
Q Consensus 298 GGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~-~D~i~vL~~G~iv~ 376 (562)
|||||||+|||||+.+|+||||||||+|||+.++..+.+.|++++++|+|||++||++.. +... ||++++|++|++++
T Consensus 154 gG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~-~~~~~~d~i~~l~~G~i~~ 232 (252)
T CHL00131 154 GGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRL-LDYIKPDYVHVMQNGKIIK 232 (252)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHH-HHhhhCCEEEEEeCCEEEE
Confidence 999999999999999999999999999999999999999999998778999999999754 4455 89999999999999
Q ss_pred ecChHHH
Q 008534 377 FGKASEA 383 (562)
Q Consensus 377 ~G~~~el 383 (562)
.|+++.+
T Consensus 233 ~~~~~~~ 239 (252)
T CHL00131 233 TGDAELA 239 (252)
T ss_pred ecChhhh
Confidence 9999843
|
|
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-42 Score=347.41 Aligned_cols=222 Identities=22% Similarity=0.385 Sum_probs=184.3
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC-C--CCccEEEECCEeCCh
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-P--TVGGSITYNDHPYSK 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~-~--~~~G~I~i~G~~~~~ 225 (562)
.|+++||++.| +++++|+|+||+|++||+++|+||||||||||+++|+|.... | +.+|+|.+||.++..
T Consensus 3 ~l~~~~v~~~~--------~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~ 74 (250)
T PRK14266 3 RIEVENLNTYF--------DDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYD 74 (250)
T ss_pred EEEEEeEEEEe--------CCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEccc
Confidence 58899999988 245799999999999999999999999999999999995421 2 368999999998742
Q ss_pred ------hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChh
Q 008534 226 ------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (562)
Q Consensus 226 ------~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGG 299 (562)
..++.++|++|++.+|+. |+.||+.++..... .......++++.++++.+++.+...... +..+..||||
T Consensus 75 ~~~~~~~~~~~i~~~~q~~~~~~~-t~~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~~LS~G 150 (250)
T PRK14266 75 PAVDVVELRKKVGMVFQKPNPFPK-SIFDNVAYGLRIHG--EDDEDFIEERVEESLKAAALWDEVKDKL-DKSALGLSGG 150 (250)
T ss_pred ccccHHHHhhheEEEecCCccCcc-hHHHHHHhHHhhcC--CCCHHHHHHHHHHHHHHcCCchhHHHHH-hCCcccCCHH
Confidence 346789999999999985 99999998643221 1123334567788899988854322111 3456789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecC
Q 008534 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (562)
Q Consensus 300 qrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (562)
||||++|||||+.+|+||||||||+|||+.++..+.+.|+++++ +.|||++||++. .+...||++++|++|++++.|+
T Consensus 151 q~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiii~sh~~~-~~~~~~~~i~~l~~G~i~~~g~ 228 (250)
T PRK14266 151 QQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKE-DYTIVIVTHNMQ-QATRVSKYTSFFLNGEIIESGL 228 (250)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEECCHH-HHHhhcCEEEEEECCeEEEeCC
Confidence 99999999999999999999999999999999999999999964 889999999976 4778899999999999999999
Q ss_pred hHHHH
Q 008534 380 ASEAM 384 (562)
Q Consensus 380 ~~el~ 384 (562)
++++.
T Consensus 229 ~~~~~ 233 (250)
T PRK14266 229 TDQIF 233 (250)
T ss_pred HHHHH
Confidence 98864
|
|
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-43 Score=348.20 Aligned_cols=215 Identities=32% Similarity=0.511 Sum_probs=173.9
Q ss_pred EEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh----
Q 008534 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (562)
Q Consensus 150 l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~---- 225 (562)
|+++|+++.|. ...+++|+|+||++++|++++|+||||||||||+++|+|.+. +.+|+|.++|.++..
T Consensus 1 i~~~~l~~~~~------~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~ 72 (234)
T cd03251 1 VEFKNVTFRYP------GDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYD--VDSGRILIDGHDVRDYTLA 72 (234)
T ss_pred CEEEEEEEEeC------CCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcccc--CCCCEEEECCEEhhhCCHH
Confidence 46899999882 112369999999999999999999999999999999999653 568999999988642
Q ss_pred hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHH-----HHHHHHHHHc--CCCccccccccCcccCCCCh
Q 008534 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKE-----KRAIDVINEL--GLERCQDTMIGGSFVRGVSG 298 (562)
Q Consensus 226 ~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~-----~~v~~~l~~l--gL~~~~~t~vg~~~~~~LSG 298 (562)
.+++.++|++|++.+++ .||+||+.+.... ....... ..+.++++.+ ++....+ ..+..|||
T Consensus 73 ~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-----~~~~~LS~ 141 (234)
T cd03251 73 SLRRQIGLVSQDVFLFN-DTVAENIAYGRPG-----ATREEVEEAARAANAHEFIMELPEGYDTVIG-----ERGVKLSG 141 (234)
T ss_pred HHHhhEEEeCCCCeecc-ccHHHHhhccCCC-----CCHHHHHHHHHHcCcHHHHHhcccCcceeec-----cCCCcCCH
Confidence 34677999999999987 6999999875321 1111111 1234555554 4443333 34678999
Q ss_pred hHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEec
Q 008534 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (562)
Q Consensus 299 GqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G 378 (562)
|||||++|||||+.+|++|||||||+|||+.++..+.+.|+++.+ ++|||++||++.. +. .||++++|++|++++.|
T Consensus 142 G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~-~~-~~d~v~~l~~G~i~~~~ 218 (234)
T cd03251 142 GQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLMK-NRTTFVIAHRLST-IE-NADRIVVLEDGKIVERG 218 (234)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEecCHHH-Hh-hCCEEEEecCCeEeeeC
Confidence 999999999999999999999999999999999999999999864 8999999999864 54 49999999999999999
Q ss_pred ChHHHHHH
Q 008534 379 KASEAMAY 386 (562)
Q Consensus 379 ~~~el~~~ 386 (562)
+++++...
T Consensus 219 ~~~~~~~~ 226 (234)
T cd03251 219 THEELLAQ 226 (234)
T ss_pred CHHHHHHc
Confidence 98887543
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-42 Score=351.03 Aligned_cols=222 Identities=22% Similarity=0.353 Sum_probs=181.2
Q ss_pred ceeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC-C--CCccEEEECCEeC
Q 008534 147 PIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-P--TVGGSITYNDHPY 223 (562)
Q Consensus 147 ~~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~-~--~~~G~I~i~G~~~ 223 (562)
+..|+++||++.| +++.+|+|+||+|++||+++|+||||||||||+++|+|.... + +.+|+|.++|+++
T Consensus 18 ~~~l~~~nl~~~~--------~~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l 89 (274)
T PRK14265 18 HSVFEVEGVKVFY--------GGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNI 89 (274)
T ss_pred CceEEEeeEEEEe--------CCeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEec
Confidence 3479999999998 235799999999999999999999999999999999996532 1 2589999999987
Q ss_pred Ch------hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCC
Q 008534 224 SK------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVS 297 (562)
Q Consensus 224 ~~------~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LS 297 (562)
.. .+++.|+|++|++.+|+. ||.||+.++...+. ... ..++.+.+.++.+++....... -+..+..||
T Consensus 90 ~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~~nl~~~~~~~~---~~~-~~~~~~~~~l~~~~l~~~l~~~-~~~~~~~LS 163 (274)
T PRK14265 90 YDSQINSVKLRRQVGMVFQRPNPFPK-SIYENIAFAPRANG---YKG-NLDELVEDSLRRAAIWEEVKDK-LKEKGTALS 163 (274)
T ss_pred ccccchhHHHhhcEEEEccCCccccc-cHHHHHHhHHHhcC---chH-HHHHHHHHHHHHcccchhhHHH-hcCCcccCC
Confidence 31 346789999999998874 99999998653221 111 2234456677777764221111 123457899
Q ss_pred hhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEc-------
Q 008534 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG------- 370 (562)
Q Consensus 298 GGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~------- 370 (562)
|||||||+|||||+.+|+||||||||+|||+.++..+.+.|+++++ ++|||++||++. .+.++||++++|+
T Consensus 164 gGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~~~~~~~ 241 (274)
T PRK14265 164 GGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE-QYTIIMVTHNMQ-QASRVADWTAFFNTEIDEYG 241 (274)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEeccccccc
Confidence 9999999999999999999999999999999999999999999975 789999999975 4778999999997
Q ss_pred --CCeEEEecChHHHH
Q 008534 371 --KGSLLYFGKASEAM 384 (562)
Q Consensus 371 --~G~iv~~G~~~el~ 384 (562)
+|++++.|+++++.
T Consensus 242 ~~~G~~~~~g~~~~~~ 257 (274)
T PRK14265 242 KRRGKLVEFSPTEQMF 257 (274)
T ss_pred ccCceEEEeCCHHHHH
Confidence 89999999998874
|
|
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-42 Score=339.10 Aligned_cols=198 Identities=28% Similarity=0.504 Sum_probs=168.9
Q ss_pred EEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCC---h---
Q 008534 152 FTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---K--- 225 (562)
Q Consensus 152 ~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~---~--- 225 (562)
++||++.| +++++|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++. .
T Consensus 1 i~~l~~~~--------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~ 70 (206)
T TIGR03608 1 LKNISKKF--------GDKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEK--FDSGQVYLNGKETPPLNSKKA 70 (206)
T ss_pred CcceEEEE--------CCEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEccccchhhH
Confidence 46888887 24579999999999999999999999999999999999643 56899999999853 1
Q ss_pred --hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHH
Q 008534 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (562)
Q Consensus 226 --~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqR 303 (562)
..++.++|++|++.+|+.+|++||+.+..... ........+++.++++.+||.+..++. +.+||||||||
T Consensus 71 ~~~~~~~i~~~~q~~~~~~~~t~~e~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~lS~G~~qr 142 (206)
T TIGR03608 71 SKFRREKLGYLFQNFALIENETVEENLDLGLKYK---KLSKKEKREKKKEALEKVGLNLKLKQK-----IYELSGGEQQR 142 (206)
T ss_pred HHHHHhCeeEEecchhhccCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCchhhhcCC-----hhhCCHHHHHH
Confidence 23567999999999999899999999865432 123344556788999999997766654 46899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEE
Q 008534 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL 369 (562)
Q Consensus 304 v~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL 369 (562)
++|||||+.+|++|||||||+|||+.++..+.+.|+++.++|.|||++||++. ....||++++|
T Consensus 143 ~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~--~~~~~d~i~~l 206 (206)
T TIGR03608 143 VALARAILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPE--VAKQADRVIEL 206 (206)
T ss_pred HHHHHHHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--HHhhcCEEEeC
Confidence 99999999999999999999999999999999999999877899999999975 34689999875
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-42 Score=341.44 Aligned_cols=210 Identities=30% Similarity=0.510 Sum_probs=178.6
Q ss_pred EEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh----
Q 008534 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (562)
Q Consensus 150 l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~---- 225 (562)
++++||++.|.. ..+.+.+|+|+||++++|++++|+||||||||||+++|+|.+ ++.+|+|.++|.++..
T Consensus 2 l~~~~l~~~~~~----~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~--~~~~G~i~~~g~~~~~~~~~ 75 (220)
T TIGR02982 2 ISIRNLNHYYGH----GSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLR--SVQEGSLKVLGQELYGASEK 75 (220)
T ss_pred EEEEEEEEEccC----CCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC--CCCCeEEEECCEEhHhcCHh
Confidence 789999998821 111367999999999999999999999999999999999954 3568999999998742
Q ss_pred ---hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHH
Q 008534 226 ---SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (562)
Q Consensus 226 ---~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrq 302 (562)
..++.++|++|++.+|+.+|+.||+.++..... .....+..+++.++++.+||.+..++. ++.|||||||
T Consensus 76 ~~~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~lS~G~~q 148 (220)
T TIGR02982 76 ELVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQP--NLSYQEARERARAMLEAVGLGDHLDYY-----PHNLSGGQKQ 148 (220)
T ss_pred HHHHHHhheEEEcCChhhcCCCCHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCChhhhhcC-----hhhCCHHHHH
Confidence 245789999999999998999999998754321 123444556788999999998766654 4689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCcEEEEEecCCChHHHhcCCEEEEEcCCeE
Q 008534 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374 (562)
Q Consensus 303 Rv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~i 374 (562)
|++|||+|+.+|++|||||||+|||+.++..+.+.|+++.+ .++|||++||++. +.++||+|++|++|++
T Consensus 149 rv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~--~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 149 RVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNR--ILDVADRIVHMEDGKL 219 (220)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH--HHhhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999976 4899999999975 4579999999999986
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-42 Score=351.75 Aligned_cols=226 Identities=25% Similarity=0.459 Sum_probs=184.9
Q ss_pred eEEEEeEEEEEeecccC-CccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh--
Q 008534 149 YLKFTDVTYKVILKGMT-SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~-~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~-- 225 (562)
+|+++||++.|...+.. ...++.+|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.++..
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~sG~i~~~g~~~~~~~ 80 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLES--PSQGNVSWRGEPLAKLN 80 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEeccccC
Confidence 58999999998310000 0013679999999999999999999999999999999999543 568999999998642
Q ss_pred -----hccCcEEEEccCC--CCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCC-ccccccccCcccCCCC
Q 008534 226 -----SLKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVS 297 (562)
Q Consensus 226 -----~~~~~igyV~Q~~--~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~~LS 297 (562)
.+++.++|++|++ .+++..|+.||+.+...... .........++.++++.+|+. ...++ .+..||
T Consensus 81 ~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~~LS 153 (268)
T PRK10419 81 RAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLL--SLDKAERLARASEMLRAVDLDDSVLDK-----RPPQLS 153 (268)
T ss_pred hhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhc--cCCHHHHHHHHHHHHHHcCCChhHhhC-----CCccCC
Confidence 2467899999997 46677899999976542110 123444556788999999996 34444 356899
Q ss_pred hhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEE
Q 008534 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (562)
Q Consensus 298 GGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~ 376 (562)
||||||++|||||+.+|+||||||||+|||+.++..+.+.|++++++ |.|||++||++. .+..+||++++|++|++++
T Consensus 154 ~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~-~i~~~~d~i~~l~~G~i~~ 232 (268)
T PRK10419 154 GGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLR-LVERFCQRVMVMDNGQIVE 232 (268)
T ss_pred hHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHH-HHHHhCCEEEEEECCEEee
Confidence 99999999999999999999999999999999999999999999764 899999999975 4667899999999999999
Q ss_pred ecChHHHH
Q 008534 377 FGKASEAM 384 (562)
Q Consensus 377 ~G~~~el~ 384 (562)
.|+++++.
T Consensus 233 ~g~~~~~~ 240 (268)
T PRK10419 233 TQPVGDKL 240 (268)
T ss_pred eCChhhcc
Confidence 99998864
|
|
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-42 Score=335.08 Aligned_cols=191 Identities=52% Similarity=0.897 Sum_probs=164.5
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh-hc
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-SL 227 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~-~~ 227 (562)
.|+++||+++|... .....+++|+|+||+|++||+++|+||||||||||+++|+|.+..++.+|+|.++|+++.. ..
T Consensus 3 ~l~~~~ls~~~~~~--~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~ 80 (194)
T cd03213 3 TLSFRNLTVTVKSS--PSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSF 80 (194)
T ss_pred EEEEEeeEEEEecC--CCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhh
Confidence 58999999998310 0011357999999999999999999999999999999999965112568999999998864 45
Q ss_pred cCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHH
Q 008534 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (562)
Q Consensus 228 ~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA 307 (562)
++.++|++|++.+|+.+|++||+.+.... ..||||||||++||
T Consensus 81 ~~~i~~~~q~~~~~~~~t~~~~i~~~~~~-------------------------------------~~LS~G~~qrv~la 123 (194)
T cd03213 81 RKIIGYVPQDDILHPTLTVRETLMFAAKL-------------------------------------RGLSGGERKRVSIA 123 (194)
T ss_pred hheEEEccCcccCCCCCcHHHHHHHHHHh-------------------------------------ccCCHHHHHHHHHH
Confidence 67899999999999989999999864210 05999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEec
Q 008534 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (562)
Q Consensus 308 raLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G 378 (562)
|||+.+|++|||||||+|||+.++..+.+.|+++.++|+|+|++||++..++.+.||++++|++|++++.|
T Consensus 124 ral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~~ 194 (194)
T cd03213 124 LELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194 (194)
T ss_pred HHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEecC
Confidence 99999999999999999999999999999999998779999999999865567889999999999998765
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-42 Score=348.65 Aligned_cols=221 Identities=20% Similarity=0.327 Sum_probs=184.5
Q ss_pred ceeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC----CCccEEEECCEe
Q 008534 147 PIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP----TVGGSITYNDHP 222 (562)
Q Consensus 147 ~~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~----~~~G~I~i~G~~ 222 (562)
++.+.++++++.| +++.+|+|+||+|++||+++|+||||||||||+++|+|.+. | +.+|+|+++|.+
T Consensus 6 ~~~~~~~~~~~~~--------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-p~~~~~~~G~i~~~g~~ 76 (261)
T PRK14263 6 PIVMDCKLDKIFY--------GNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMND-LVKGFRFEGHVHFLGQD 76 (261)
T ss_pred CceEEEEeEEEEe--------CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccc-cccCCCCceEEEECCEe
Confidence 4468999999987 24579999999999999999999999999999999999653 2 258999999998
Q ss_pred CCh------hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCC
Q 008534 223 YSK------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGV 296 (562)
Q Consensus 223 ~~~------~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~L 296 (562)
+.. .+++.++|++|++.+| .+|++||+.++...+. . ......++.++++.++|.+...... +..++.|
T Consensus 77 i~~~~~~~~~~~~~i~~v~q~~~~~-~~tv~enl~~~~~~~~---~-~~~~~~~~~~~l~~~~l~~~i~~~~-~~~~~~L 150 (261)
T PRK14263 77 VYGKGVDPVVVRRYIGMVFQQPNPF-SMSIFDNVAFGLRLNR---Y-KGDLGDRVKHALQGAALWDEVKDKL-KVSGLSL 150 (261)
T ss_pred ccccccchHhhhhceEEEecCCccc-cccHHHHHHHHHhhcC---c-hHHHHHHHHHHHHHcCCchhhhhhh-hCCcccC
Confidence 742 3466799999999988 4899999998764321 1 2233456888899999864332222 2346789
Q ss_pred ChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEc------
Q 008534 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG------ 370 (562)
Q Consensus 297 SGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~------ 370 (562)
|||||||++|||||+.+|+||||||||+|||+.++..+.+.|+++.+ ++|||++||++. .+.++||+|++|+
T Consensus 151 S~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~-~~tii~isH~~~-~i~~~~d~v~~l~~~~~~~ 228 (261)
T PRK14263 151 SGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKK-DYTIALVTHNMQ-QAIRVADTTAFFSVDISQG 228 (261)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEecccccc
Confidence 99999999999999999999999999999999999999999999964 789999999976 4678999999995
Q ss_pred --CCeEEEecChHHHH
Q 008534 371 --KGSLLYFGKASEAM 384 (562)
Q Consensus 371 --~G~iv~~G~~~el~ 384 (562)
+|++++.|+++++.
T Consensus 229 ~~~G~i~~~g~~~~~~ 244 (261)
T PRK14263 229 TRTGYLVEMGPTAQIF 244 (261)
T ss_pred cCCceEEEeCCHHHHH
Confidence 89999999998864
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-42 Score=375.18 Aligned_cols=228 Identities=26% Similarity=0.422 Sum_probs=193.9
Q ss_pred eeEEEEeEEEEEeeccc---CCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCC
Q 008534 148 IYLKFTDVTYKVILKGM---TSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS 224 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~---~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~ 224 (562)
+.++++||++.|..++. ...+...+++||||++.+||++||||+||||||||.|+|+|++. +.+|.|.++|.+..
T Consensus 279 ~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~--P~~G~i~~~g~~~~ 356 (539)
T COG1123 279 PLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLP--PSSGSIIFDGQDLD 356 (539)
T ss_pred ceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEEeCcccc
Confidence 46899999999964320 01234579999999999999999999999999999999999543 46899999998731
Q ss_pred ------hhccCcEEEEccCC--CCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCC
Q 008534 225 ------KSLKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGV 296 (562)
Q Consensus 225 ------~~~~~~igyV~Q~~--~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~L 296 (562)
...++++-+||||| .|.|.+||+++|......... ....+.++++.++++..||+.. +.++++++|
T Consensus 357 ~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~--~~~~~~~~rv~~ll~~VgL~~~----~l~ryP~el 430 (539)
T COG1123 357 LTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGG--GSGAERRARVAELLELVGLPPE----FLDRYPHEL 430 (539)
T ss_pred cccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcc--cchHHHHHHHHHHHHHcCCCHH----HHhcCchhc
Confidence 23567889999997 589999999999987654432 2256667789999999999842 445688999
Q ss_pred ChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEE
Q 008534 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLL 375 (562)
Q Consensus 297 SGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv 375 (562)
|||||||++|||||+.+|++|++|||||+||+..+..|++.|+++.++ |.|.|+||||+. .+..+||||+||++|+||
T Consensus 431 SGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~-vV~~i~drv~vm~~G~iV 509 (539)
T COG1123 431 SGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLA-VVRYIADRVAVMYDGRIV 509 (539)
T ss_pred CcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHH-HHHhhCceEEEEECCeEE
Confidence 999999999999999999999999999999999999999999999765 999999999976 477899999999999999
Q ss_pred EecChHHHH
Q 008534 376 YFGKASEAM 384 (562)
Q Consensus 376 ~~G~~~el~ 384 (562)
+.|+.+++.
T Consensus 510 E~G~~~~v~ 518 (539)
T COG1123 510 EEGPTEKVF 518 (539)
T ss_pred EeCCHHHHh
Confidence 999888774
|
|
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-42 Score=352.65 Aligned_cols=221 Identities=24% Similarity=0.408 Sum_probs=181.9
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC---CCCccEEEECCEeCC
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME---PTVGGSITYNDHPYS 224 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~---~~~~G~I~i~G~~~~ 224 (562)
..|+++||+++| .++.+|+|+||+|++||+++|+||||||||||+++|+|.+.. .+.+|+|.++|.++.
T Consensus 38 ~~l~i~~l~~~~--------~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~ 109 (285)
T PRK14254 38 TVIEARDLNVFY--------GDEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVY 109 (285)
T ss_pred ceEEEEEEEEEE--------CCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEcc
Confidence 369999999998 235799999999999999999999999999999999996531 146899999999863
Q ss_pred h------hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCCh
Q 008534 225 K------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSG 298 (562)
Q Consensus 225 ~------~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSG 298 (562)
. .+++.++||+|++.+|+. ||+||+.+...... ... ....++.++++.++|.+..... -+..+.+|||
T Consensus 110 ~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~---~~~-~~~~~~~~~l~~~~l~~~i~~~-~~~~~~~LSg 183 (285)
T PRK14254 110 DADVDPVALRRRIGMVFQKPNPFPK-SIYDNVAYGLKIQG---YDG-DIDERVEESLRRAALWDEVKDQ-LDSSGLDLSG 183 (285)
T ss_pred ccccchHhhhccEEEEecCCccCcC-CHHHHHHHHHHHcC---CcH-HHHHHHHHHHHHcCCCchhHHH-HhCCcccCCH
Confidence 1 346789999999998885 99999998754321 122 3345678899999885321111 1234578999
Q ss_pred hHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEE-EEcCCeEEEe
Q 008534 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLI-LLGKGSLLYF 377 (562)
Q Consensus 299 GqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~-vL~~G~iv~~ 377 (562)
||||||+|||||+.+|+||||||||+|||+.++..+.+.|+++++ +.|||++||++. .+..+||+++ +|++|++++.
T Consensus 184 Ge~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~-~~tiii~tH~~~-~i~~~~dri~v~l~~G~i~~~ 261 (285)
T PRK14254 184 GQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAE-EYTVVIVTHNMQ-QAARISDKTAVFLTGGELVEF 261 (285)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHhhcCEEEEEeeCCEEEEe
Confidence 999999999999999999999999999999999999999999976 489999999975 4677899975 6799999999
Q ss_pred cChHHHH
Q 008534 378 GKASEAM 384 (562)
Q Consensus 378 G~~~el~ 384 (562)
|+++++.
T Consensus 262 g~~~~~~ 268 (285)
T PRK14254 262 DDTDKIF 268 (285)
T ss_pred CCHHHHH
Confidence 9988763
|
|
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-42 Score=345.75 Aligned_cols=201 Identities=31% Similarity=0.468 Sum_probs=170.3
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHHHHHH
Q 008534 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTY 252 (562)
Q Consensus 173 L~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~~~igyV~Q~~~l~~~lTV~enl~~ 252 (562)
|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++... ....+||+|++.+|+.+||+||+.+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~-~~~~~~v~q~~~l~~~~tv~e~l~~ 77 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQ--PTSGGVILEGKQITEP-GPDRMVVFQNYSLLPWLTVRENIAL 77 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCCC-ChhheEEecCcccCCCCCHHHHHHH
Confidence 589999999999999999999999999999999653 5689999999987532 2235899999999998999999998
Q ss_pred HHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 008534 253 AALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTAL 332 (562)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~ 332 (562)
+.....+ ...+.+..+++.++++.++|.+..++. +.+|||||||||+|||||+.+|++|||||||+|||+.++.
T Consensus 78 ~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~ 151 (230)
T TIGR01184 78 AVDRVLP-DLSKSERRAIVEEHIALVGLTEAADKR-----PGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRG 151 (230)
T ss_pred HHHhccc-CCCHHHHHHHHHHHHHHcCCHHHHcCC-----hhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHH
Confidence 6421111 223344456688899999998766654 4689999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHH
Q 008534 333 RIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (562)
Q Consensus 333 ~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el 383 (562)
.+.+.|++++++ |+|||++||++. .+.+.||+|++|++|++++.|+..++
T Consensus 152 ~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~~ 202 (230)
T TIGR01184 152 NLQEELMQIWEEHRVTVLMVTHDVD-EALLLSDRVVMLTNGPAANIGQILEV 202 (230)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEeCCcEecccCceec
Confidence 999999999764 899999999976 46788999999999999999866543
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-43 Score=348.24 Aligned_cols=218 Identities=31% Similarity=0.509 Sum_probs=171.8
Q ss_pred EEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh----
Q 008534 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (562)
Q Consensus 150 l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~---- 225 (562)
++++|+++.|. ...++++|+|+||++++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++..
T Consensus 1 l~i~~l~~~~~-----~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~ 73 (238)
T cd03249 1 IEFKNVSFRYP-----SRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYD--PTSGEILLDGVDIRDLNLR 73 (238)
T ss_pred CeEEEEEEecC-----CCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCC--CCCCEEEECCEehhhcCHH
Confidence 46899999872 1123579999999999999999999999999999999999643 568999999988642
Q ss_pred hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHH-----HHHHHHHHcCCCccccccccCcccCCCChhH
Q 008534 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEK-----RAIDVINELGLERCQDTMIGGSFVRGVSGGE 300 (562)
Q Consensus 226 ~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~-----~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGq 300 (562)
..++.++|++|++.+++ .||+||+.++.... ....... .+.++++.+ +...++.. +..+..|||||
T Consensus 74 ~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l--~~~~~~~~-~~~~~~LS~G~ 144 (238)
T cd03249 74 WLRSQIGLVSQEPVLFD-GTIAENIRYGKPDA-----TDEEVEEAAKKANIHDFIMSL--PDGYDTLV-GERGSQLSGGQ 144 (238)
T ss_pred HHHhhEEEECCchhhhh-hhHHHHhhccCCCC-----CHHHHHHHHHHcChHHHHHhh--ccccceee-ccCCccCCHHH
Confidence 23567999999998887 69999998753211 1111111 122223322 11122222 23457899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecCh
Q 008534 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 380 (562)
Q Consensus 301 rqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~ 380 (562)
||||+|||||+.+|++|||||||+|||+.++..+.+.|+++. +|+|||++||++.. + ..||++++|++|++++.|+.
T Consensus 145 ~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~g~~vi~~sh~~~~-~-~~~d~v~~l~~G~i~~~~~~ 221 (238)
T cd03249 145 KQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAM-KGRTTIVIAHRLST-I-RNADLIAVLQNGQVVEQGTH 221 (238)
T ss_pred HHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHH-H-hhCCEEEEEECCEEEEeCCH
Confidence 999999999999999999999999999999999999999987 68999999999764 4 47999999999999999998
Q ss_pred HHHHHH
Q 008534 381 SEAMAY 386 (562)
Q Consensus 381 ~el~~~ 386 (562)
+++..+
T Consensus 222 ~~~~~~ 227 (238)
T cd03249 222 DELMAQ 227 (238)
T ss_pred HHHhhc
Confidence 887654
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-44 Score=440.91 Aligned_cols=215 Identities=23% Similarity=0.389 Sum_probs=182.3
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCC---
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS--- 224 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~--- 224 (562)
..|+|+||+|+|+ ...+++|+||||+|++||.+||+|+||||||||+++|.| +++| .+|+|++||.++.
T Consensus 1307 G~I~f~nVsf~Y~------~~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlr-l~~p-~~G~I~IDG~di~~i~ 1378 (1560)
T PTZ00243 1307 GSLVFEGVQMRYR------EGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMR-MVEV-CGGEIRVNGREIGAYG 1378 (1560)
T ss_pred CeEEEEEEEEEeC------CCCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhC-CCCC-CCcEEEECCEEcccCC
Confidence 4699999999993 123569999999999999999999999999999999997 5544 5899999999986
Q ss_pred -hhccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcC-------CCccccccccCcccCCC
Q 008534 225 -KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG-------LERCQDTMIGGSFVRGV 296 (562)
Q Consensus 225 -~~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~t~vg~~~~~~L 296 (562)
+.+|++|+||||++.+|+. ||+|||.... ..+++ .+.++++..+ +++.+||.+|.. ...|
T Consensus 1379 l~~LR~~I~iVpQdp~LF~g-TIreNIdp~~------~~sde----eI~~Al~~a~l~~~I~~lp~Gldt~vge~-G~nL 1446 (1560)
T PTZ00243 1379 LRELRRQFSMIPQDPVLFDG-TVRQNVDPFL------EASSA----EVWAALELVGLRERVASESEGIDSRVLEG-GSNY 1446 (1560)
T ss_pred HHHHHhcceEECCCCccccc-cHHHHhCccc------CCCHH----HHHHHHHHCCChHHHhhCcccccccccCC-cCcC
Confidence 3688999999999999975 9999996421 22332 3444444444 356789998864 4569
Q ss_pred ChhHHHHHHHHHHHhhC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEE
Q 008534 297 SGGERKRVCIGNEIIIN-PSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLL 375 (562)
Q Consensus 297 SGGqrqRv~IAraLl~~-P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv 375 (562)
|||||||++|||||+++ |+|||||||||+||+.+...|.+.|++.. +++|||+|+|+++. ...||+|++|++|+|+
T Consensus 1447 SgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~-~~~TvI~IAHRl~t--i~~~DrIlVLd~G~Vv 1523 (1560)
T PTZ00243 1447 SVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAF-SAYTVITIAHRLHT--VAQYDKIIVMDHGAVA 1523 (1560)
T ss_pred CHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHC-CCCEEEEEeccHHH--HHhCCEEEEEECCEEE
Confidence 99999999999999996 89999999999999999999999999864 47999999999864 5779999999999999
Q ss_pred EecChHHHHH
Q 008534 376 YFGKASEAMA 385 (562)
Q Consensus 376 ~~G~~~el~~ 385 (562)
+.|+|+++++
T Consensus 1524 E~Gt~~eLl~ 1533 (1560)
T PTZ00243 1524 EMGSPRELVM 1533 (1560)
T ss_pred EECCHHHHHh
Confidence 9999999874
|
|
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-42 Score=349.72 Aligned_cols=220 Identities=21% Similarity=0.378 Sum_probs=180.8
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC-C--CCccEEEECCEeCC-
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-P--TVGGSITYNDHPYS- 224 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~-~--~~~G~I~i~G~~~~- 224 (562)
.|+++||+++| +.+++|+|+||+|++||+++|+||||||||||+++|+|.... | +.+|+|.++|+++.
T Consensus 10 ~l~i~~v~~~~--------~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~ 81 (264)
T PRK14243 10 VLRTENLNVYY--------GSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYA 81 (264)
T ss_pred EEEEeeeEEEE--------CCEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccc
Confidence 69999999998 235799999999999999999999999999999999995431 2 35899999998863
Q ss_pred -----hhccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChh
Q 008534 225 -----KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (562)
Q Consensus 225 -----~~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGG 299 (562)
..+++.|+||+|++.+|+ .||.||+.++.... ... ....+++.++++.+++.+..+.. -+..+.+||||
T Consensus 82 ~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~---~~~-~~~~~~~~~~l~~~~l~~~l~~~-~~~~~~~LSgG 155 (264)
T PRK14243 82 PDVDPVEVRRRIGMVFQKPNPFP-KSIYDNIAYGARIN---GYK-GDMDELVERSLRQAALWDEVKDK-LKQSGLSLSGG 155 (264)
T ss_pred cccChHHHhhhEEEEccCCcccc-ccHHHHHHhhhhhc---Ccc-hHHHHHHHHHHHHhCchhhHHHH-hcCCcccCCHH
Confidence 234677999999999888 59999999875332 111 12334566677777774321111 12346789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEc---------
Q 008534 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG--------- 370 (562)
Q Consensus 300 qrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~--------- 370 (562)
||||++|||||+.+|+||||||||+|||+.++..+.+.|+++++ ++|||++||++. .+.++||+|++|+
T Consensus 156 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tvi~vtH~~~-~~~~~~d~v~~l~~~~~~~~~~ 233 (264)
T PRK14243 156 QQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKE-QYTIIIVTHNMQ-QAARVSDMTAFFNVELTEGGGR 233 (264)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhCCEEEEEeccccccccc
Confidence 99999999999999999999999999999999999999999976 589999999975 4788999999998
Q ss_pred CCeEEEecChHHHH
Q 008534 371 KGSLLYFGKASEAM 384 (562)
Q Consensus 371 ~G~iv~~G~~~el~ 384 (562)
+|++++.|+++++.
T Consensus 234 ~g~i~~~~~~~~~~ 247 (264)
T PRK14243 234 YGYLVEFDRTEKIF 247 (264)
T ss_pred CceEEEeCCHHHHH
Confidence 79999999998874
|
|
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-42 Score=346.30 Aligned_cols=218 Identities=25% Similarity=0.413 Sum_probs=179.4
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEe-----C
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP-----Y 223 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~-----~ 223 (562)
.|+++||++.| +++.+|+|+||+|++|++++|+||||||||||+++|+|... +.+|+|.++|.+ +
T Consensus 3 ~l~~~~l~~~~--------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~ 72 (253)
T TIGR02323 3 LLQVSGLSKSY--------GGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLA--PDHGTATYIMRSGAELEL 72 (253)
T ss_pred eEEEeeeEEEe--------CCceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEEeccccccccc
Confidence 58999999998 23569999999999999999999999999999999999543 568999999976 4
Q ss_pred Ch--------hccCcEEEEccCCC--CCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCc-cccccccCcc
Q 008534 224 SK--------SLKSKIGFVTQDDV--LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-CQDTMIGGSF 292 (562)
Q Consensus 224 ~~--------~~~~~igyV~Q~~~--l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~t~vg~~~ 292 (562)
.. ..++.|+|++|++. +++.+|+.+|+.+...... ..........+.++++.+++.+ ..++ .
T Consensus 73 ~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~l~~l~l~~~~~~~-----~ 145 (253)
T TIGR02323 73 YQLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIG--ARHYGNIRAAAHDWLEEVEIDPTRIDD-----L 145 (253)
T ss_pred ccCCHHHHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhc--ccchHHHHHHHHHHHHHcCCChhhhhc-----C
Confidence 31 12356999999974 4556799999976432111 0011233467788999999963 4444 3
Q ss_pred cCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcC
Q 008534 293 VRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGK 371 (562)
Q Consensus 293 ~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~ 371 (562)
+..|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++.++ |.|||++||++. .+...||++++|++
T Consensus 146 ~~~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~-~~~~~~d~~~~l~~ 224 (253)
T TIGR02323 146 PRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLG-VARLLAQRLLVMQQ 224 (253)
T ss_pred chhcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEEC
Confidence 5789999999999999999999999999999999999999999999998754 899999999975 46678999999999
Q ss_pred CeEEEecChHHHH
Q 008534 372 GSLLYFGKASEAM 384 (562)
Q Consensus 372 G~iv~~G~~~el~ 384 (562)
|++++.|+++++.
T Consensus 225 G~i~~~~~~~~~~ 237 (253)
T TIGR02323 225 GRVVESGLTDQVL 237 (253)
T ss_pred CEEEEECCHHHHh
Confidence 9999999988764
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-44 Score=372.04 Aligned_cols=224 Identities=33% Similarity=0.518 Sum_probs=193.0
Q ss_pred ceeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCC--
Q 008534 147 PIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS-- 224 (562)
Q Consensus 147 ~~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~-- 224 (562)
+..+.|.||+|.|. +.+++|+|+||++++|+.+|++||||+||||++++|- |++++. +|.|.+||+++.
T Consensus 260 ~g~v~F~~V~F~y~-------~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllf-RFyD~~-sG~I~id~qdir~v 330 (497)
T COG5265 260 LGAVAFINVSFAYD-------PRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLF-RFYDVN-SGSITIDGQDIRDV 330 (497)
T ss_pred cceEEEEEEEeecc-------ccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHH-HHhCCc-CceEEEcchhHHHh
Confidence 44699999999983 4678999999999999999999999999999999999 678765 899999999985
Q ss_pred --hhccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHH
Q 008534 225 --KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (562)
Q Consensus 225 --~~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrq 302 (562)
..+|+-||.||||..||.+ |+..|+.|+........+....+.+.++++++. +++++++.||.++.+ |||||||
T Consensus 331 tq~slR~aIg~VPQDtvLFND-ti~yni~ygr~~at~eev~aaa~~aqi~~fi~~--lP~gy~t~Vgerglk-lSggekq 406 (497)
T COG5265 331 TQQSLRRAIGIVPQDTVLFND-TIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQS--LPEGYDTGVGERGLK-LSGGEKQ 406 (497)
T ss_pred HHHHHHHHhCcCcccceehhh-hHHHHHhccCccccHHHHHHHHHHhhhhHHHHh--Cchhhhcccchheee-ccCchHH
Confidence 3578999999999999975 999999998432211112223334445566664 599999999987665 9999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHH
Q 008534 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (562)
Q Consensus 303 Rv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~e 382 (562)
||+|||+++++|+||+|||.||+||..++++|...|+++. .|+|.+++.|++++ + -.+|.|+||++|+|++.|+|++
T Consensus 407 rvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~-~~rttlviahrlst-i-~~adeiivl~~g~i~erg~h~~ 483 (497)
T COG5265 407 RVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVS-AGRTTLVIAHRLST-I-IDADEIIVLDNGRIVERGTHEE 483 (497)
T ss_pred HHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHh-CCCeEEEEeehhhh-c-cCCceEEEeeCCEEEecCcHHH
Confidence 9999999999999999999999999999999999999987 58999999999986 3 4699999999999999999999
Q ss_pred HHHH
Q 008534 383 AMAY 386 (562)
Q Consensus 383 l~~~ 386 (562)
++..
T Consensus 484 ll~~ 487 (497)
T COG5265 484 LLAA 487 (497)
T ss_pred HHHc
Confidence 9863
|
|
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-42 Score=354.13 Aligned_cols=213 Identities=22% Similarity=0.382 Sum_probs=177.6
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
.|+++||++.|. .....+|+||||+|++||+++|+||||||||||+++|+|.+. .+|+|++||.++..
T Consensus 2 ~i~~~nls~~~~------~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~---~~G~I~i~g~~i~~~~~ 72 (275)
T cd03289 2 QMTVKDLTAKYT------EGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN---TEGDIQIDGVSWNSVPL 72 (275)
T ss_pred eEEEEEEEEEeC------CCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC---CCcEEEECCEEhhhCCH
Confidence 488999999983 124569999999999999999999999999999999998652 47999999998742
Q ss_pred -hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccc-------cccCcccCCCC
Q 008534 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDT-------MIGGSFVRGVS 297 (562)
Q Consensus 226 -~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t-------~vg~~~~~~LS 297 (562)
.+++.|+||||++.+|+. ||++|+.+.. .... +++.+.++.+||.+..+. .+++ ....||
T Consensus 73 ~~lr~~i~~v~q~~~lf~~-tv~~nl~~~~------~~~~----~~~~~~l~~~gL~~~~~~~p~~l~~~~~~-~g~~LS 140 (275)
T cd03289 73 QKWRKAFGVIPQKVFIFSG-TFRKNLDPYG------KWSD----EEIWKVAEEVGLKSVIEQFPGQLDFVLVD-GGCVLS 140 (275)
T ss_pred HHHhhhEEEECCCcccchh-hHHHHhhhcc------CCCH----HHHHHHHHHcCCHHHHHhCcccccceecC-CCCCCC
Confidence 467789999999999985 9999996421 1112 245667777787654443 3332 345699
Q ss_pred hhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEe
Q 008534 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (562)
Q Consensus 298 GGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~ 377 (562)
||||||++|||||+.+|+||||||||++||+.+...+.+.|+++. .++|||+++|++.. + ..||+|++|++|++++.
T Consensus 141 ~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~-~~~tii~isH~~~~-i-~~~dri~vl~~G~i~~~ 217 (275)
T cd03289 141 HGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAF-ADCTVILSEHRIEA-M-LECQRFLVIEENKVRQY 217 (275)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhc-CCCEEEEEECCHHH-H-HhCCEEEEecCCeEeec
Confidence 999999999999999999999999999999999999999999875 48999999999853 4 45999999999999999
Q ss_pred cChHHHHH
Q 008534 378 GKASEAMA 385 (562)
Q Consensus 378 G~~~el~~ 385 (562)
|++++++.
T Consensus 218 g~~~~l~~ 225 (275)
T cd03289 218 DSIQKLLN 225 (275)
T ss_pred CCHHHHhh
Confidence 99999864
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PRK09580 sufC cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-42 Score=343.13 Aligned_cols=227 Identities=27% Similarity=0.344 Sum_probs=179.5
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
+|+++||++.| +++++|+|+||+|++|++++|+||||||||||+++|+|....++.+|+|.++|.++..
T Consensus 1 ~i~~~nl~~~~--------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~ 72 (248)
T PRK09580 1 MLSIKDLHVSV--------EDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSP 72 (248)
T ss_pred CeEEEEEEEEe--------CCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCH
Confidence 37899999998 2457999999999999999999999999999999999964213568999999987642
Q ss_pred -h-ccCcEEEEccCCCCCCCCCHHHHHHHHHh-hCC--C-CCccHHHHHHHHHHHHHHcCCCc-cccccccCcccCCCCh
Q 008534 226 -S-LKSKIGFVTQDDVLFPHLTVKETLTYAAL-LRL--P-NTLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVRGVSG 298 (562)
Q Consensus 226 -~-~~~~igyV~Q~~~l~~~lTV~enl~~~~~-~~~--~-~~~~~~~~~~~v~~~l~~lgL~~-~~~t~vg~~~~~~LSG 298 (562)
. .++.++|++|++.+++.+|+.+++.+... ... . .........+.+.++++.+++++ ..++.+ .+.|||
T Consensus 73 ~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~----~~~LS~ 148 (248)
T PRK09580 73 EDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSV----NVGFSG 148 (248)
T ss_pred HHHhhcceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCC----CCCCCH
Confidence 1 23569999999999888888777654321 100 0 00112223456778889999963 333322 137999
Q ss_pred hHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhc-CCEEEEEcCCeEEEe
Q 008534 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHK-FDKLILLGKGSLLYF 377 (562)
Q Consensus 299 GqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~-~D~i~vL~~G~iv~~ 377 (562)
||||||+|||||+.+|+||||||||+|||+.++..+.+.|+++++.|+|||++||++.. +... ||+|++|++|++++.
T Consensus 149 G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~-~~~~~~d~i~~l~~g~i~~~ 227 (248)
T PRK09580 149 GEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRI-LDYIKPDYVHVLYQGRIVKS 227 (248)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-HHhhhCCEEEEEECCeEEEe
Confidence 99999999999999999999999999999999999999999998778999999999753 5455 899999999999999
Q ss_pred cChHHHHHHHHh
Q 008534 378 GKASEAMAYFSS 389 (562)
Q Consensus 378 G~~~el~~~f~~ 389 (562)
|+++.+ +.+..
T Consensus 228 g~~~~~-~~~~~ 238 (248)
T PRK09580 228 GDFTLV-KQLEE 238 (248)
T ss_pred CCHHHH-HHHHh
Confidence 998854 44443
|
|
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-42 Score=342.59 Aligned_cols=210 Identities=24% Similarity=0.410 Sum_probs=175.8
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
.|+++||++.| +++++|+|+||+|++||+++|+||||||||||+++|+|.. ++.+|+|.++|.++..
T Consensus 7 ~i~~~~l~~~~--------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~--~~~~G~i~~~g~~~~~~~~ 76 (225)
T PRK10247 7 LLQLQNVGYLA--------GDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLI--SPTSGTLLFEGEDISTLKP 76 (225)
T ss_pred eEEEeccEEee--------CCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhccc--CCCCCeEEECCEEcCcCCH
Confidence 69999999988 2457999999999999999999999999999999999954 3568999999988642
Q ss_pred -hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCC-ccccccccCcccCCCChhHHHH
Q 008534 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVSGGERKR 303 (562)
Q Consensus 226 -~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~~LSGGqrqR 303 (562)
.+++.++|++|++.+|+ .||+||+.+....+.. . ..+.++.++++.+++. ...++ .+..||||||||
T Consensus 77 ~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~~---~--~~~~~~~~~l~~~~l~~~~~~~-----~~~~LS~G~~qr 145 (225)
T PRK10247 77 EIYRQQVSYCAQTPTLFG-DTVYDNLIFPWQIRNQ---Q--PDPAIFLDDLERFALPDTILTK-----NIAELSGGEKQR 145 (225)
T ss_pred HHHHhccEEEeccccccc-ccHHHHHHhHHhhcCC---C--hHHHHHHHHHHHcCCChHHhcC-----CcccCCHHHHHH
Confidence 34678999999999997 5999999886433211 1 1234567889999995 34444 457899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEc-CCeEEEecChH
Q 008534 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLG-KGSLLYFGKAS 381 (562)
Q Consensus 304 v~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~-~G~iv~~G~~~ 381 (562)
|+|||||+.+|++|||||||+|||+.++..+.+.|+++.++ |.|||++||++.. + ..||++++|+ ++..+.+|+++
T Consensus 146 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~-~-~~~d~i~~l~~~~~~~~~~~~~ 223 (225)
T PRK10247 146 ISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDE-I-NHADKVITLQPHAGEMQEARYE 223 (225)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHH-H-HhCCEEEEEecccchHhhhhhc
Confidence 99999999999999999999999999999999999998764 8999999999764 4 5699999995 56777878764
|
|
| >COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-43 Score=329.63 Aligned_cols=218 Identities=29% Similarity=0.504 Sum_probs=191.7
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCC----
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---- 224 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~---- 224 (562)
.|+++|+.++| +...+|++||++.+.|+++.|+|.|||||||+|+||. .+.. |..|.|.+||+.+.
T Consensus 6 ~l~v~dlHK~~--------G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN-~LE~-P~~G~I~v~geei~~k~~ 75 (256)
T COG4598 6 ALEVEDLHKRY--------GEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCIN-FLEK-PSAGSIRVNGEEIRLKRD 75 (256)
T ss_pred ceehhHHHhhc--------ccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHH-hhcC-CCCceEEECCeEEEeeeC
Confidence 58889999888 4678999999999999999999999999999999998 4544 56899999998762
Q ss_pred -------------hhccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCc
Q 008534 225 -------------KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGS 291 (562)
Q Consensus 225 -------------~~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~ 291 (562)
..+|.+.|+|||+.+|+++|||.||+.-+..--+ +.++.+..++++.+|..+|+.+..+.
T Consensus 76 ~~G~l~~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVL--g~~k~ea~e~Ae~~L~kVGi~ek~~~----- 148 (256)
T COG4598 76 KDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVL--GVSKAEAIERAEKYLAKVGIAEKADA----- 148 (256)
T ss_pred CCCCeeeCCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhh--cCCHHHHHHHHHHHHHHhCchhhhhc-----
Confidence 1246779999999999999999999986532111 35677778889999999999887764
Q ss_pred ccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcC
Q 008534 292 FVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK 371 (562)
Q Consensus 292 ~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~ 371 (562)
++..|||||+||++|||||+.+|+++++|||||+|||+-.-++++.+++|+++|+|.+++||.+.. .-+...+|++|++
T Consensus 149 YP~~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~F-AR~Vss~v~fLh~ 227 (256)
T COG4598 149 YPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGF-ARDVSSHVIFLHQ 227 (256)
T ss_pred CccccCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhH-HHhhhhheEEeec
Confidence 567899999999999999999999999999999999999999999999999999999999999765 4567899999999
Q ss_pred CeEEEecChHHHH
Q 008534 372 GSLLYFGKASEAM 384 (562)
Q Consensus 372 G~iv~~G~~~el~ 384 (562)
|.|-+.|+|+++.
T Consensus 228 G~iEE~G~P~qvf 240 (256)
T COG4598 228 GKIEEEGPPEQVF 240 (256)
T ss_pred ceecccCChHHHh
Confidence 9999999999874
|
|
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-42 Score=344.24 Aligned_cols=214 Identities=33% Similarity=0.516 Sum_probs=172.1
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
.|+++|++++|. ..+.+|+|+||+|++|++++|+||||||||||+++|+|.+. +.+|+|.++|.++..
T Consensus 2 ~l~~~~l~~~~~-------~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~ 72 (229)
T cd03254 2 EIEFENVNFSYD-------EKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYD--PQKGQILIDGIDIRDISR 72 (229)
T ss_pred eEEEEEEEEecC-------CCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCCEEEECCEeHHHcCH
Confidence 478999999882 13469999999999999999999999999999999999653 568999999988642
Q ss_pred -hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccc-------cccccCcccCCCC
Q 008534 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQ-------DTMIGGSFVRGVS 297 (562)
Q Consensus 226 -~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-------~t~vg~~~~~~LS 297 (562)
.+++.++|++|++.+|+. ||+||+.+.... ... .++.+.++.+++.+.. ++.. +..+..||
T Consensus 73 ~~~~~~i~~~~q~~~~~~~-tv~~~~~~~~~~-----~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~LS 141 (229)
T cd03254 73 KSLRSMIGVVLQDTFLFSG-TIMENIRLGRPN-----ATD----EEVIEAAKEAGAHDFIMKLPNGYDTVL-GENGGNLS 141 (229)
T ss_pred HHHhhhEEEecCCchhhhh-HHHHHHhccCCC-----CCH----HHHHHHHHHhChHHHHHhCcccccCHh-hcCCCcCC
Confidence 346779999999998875 999999875321 111 1222333333332211 2221 23467899
Q ss_pred hhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEe
Q 008534 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (562)
Q Consensus 298 GGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~ 377 (562)
|||||||+|||||+.+|++|||||||+|||+.++..+++.|+++. +|+|||++||++.. + ..||++++|++|++++.
T Consensus 142 ~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~-~-~~~d~i~~l~~g~~~~~ 218 (229)
T cd03254 142 QGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLM-KGRTSIIIAHRLST-I-KNADKILVLDDGKIIEE 218 (229)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHHH-H-hhCCEEEEEeCCeEEEe
Confidence 999999999999999999999999999999999999999999986 48999999999764 4 46999999999999999
Q ss_pred cChHHHHH
Q 008534 378 GKASEAMA 385 (562)
Q Consensus 378 G~~~el~~ 385 (562)
|+.+++..
T Consensus 219 ~~~~~~~~ 226 (229)
T cd03254 219 GTHDELLA 226 (229)
T ss_pred CCHHHHHh
Confidence 98877654
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-42 Score=371.88 Aligned_cols=228 Identities=27% Similarity=0.447 Sum_probs=196.2
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC--CccEEEECCEeCCh-
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPT--VGGSITYNDHPYSK- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~--~~G~I~i~G~~~~~- 225 (562)
.|+++|++..|... +....+++||||+|.+||++||+|.|||||||+.++|.|.+..+. .+|+|.++|.++..
T Consensus 5 lL~V~nL~v~~~~~----~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l 80 (539)
T COG1123 5 LLEVENLTVEFATD----GGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGL 80 (539)
T ss_pred eEEEeceEEEEecC----CcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcC
Confidence 69999999998432 233579999999999999999999999999999999999765431 47999999987631
Q ss_pred ------h-ccCcEEEEccCCC--CCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCC
Q 008534 226 ------S-LKSKIGFVTQDDV--LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGV 296 (562)
Q Consensus 226 ------~-~~~~igyV~Q~~~--l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~L 296 (562)
. ..+.|+||||+|. |-|-+||.+-|.-....+.. .+.++..+++.++++.+||++.... +.++++|
T Consensus 81 ~~~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~--~~~~ea~~~a~elL~~Vgl~~~~~~---~~yPheL 155 (539)
T COG1123 81 SEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGK--GSRAEARKRAVELLEQVGLPDPERR---DRYPHQL 155 (539)
T ss_pred CHHHHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhcc--ccHHHHHHHHHHHHHHcCCCChhhh---ccCCccc
Confidence 1 2367999999974 66778999999876665532 3477788889999999999876554 5689999
Q ss_pred ChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCcEEEEEecCCChHHHhcCCEEEEEcCCeEE
Q 008534 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLL 375 (562)
Q Consensus 297 SGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv 375 (562)
||||||||.||+||+.+|++||+||||++||+.++.+|++.|+++.+ .|.++|+||||+. .+.++||||+||++|+++
T Consensus 156 SGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~-Vva~~aDrv~Vm~~G~iV 234 (539)
T COG1123 156 SGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLG-VVAELADRVVVMYKGEIV 234 (539)
T ss_pred CchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHH-HHHHhcCeEEEEECCEEE
Confidence 99999999999999999999999999999999999999999999975 5999999999976 578899999999999999
Q ss_pred EecChHHHHHH
Q 008534 376 YFGKASEAMAY 386 (562)
Q Consensus 376 ~~G~~~el~~~ 386 (562)
+.|++++++.-
T Consensus 235 E~G~~~~i~~~ 245 (539)
T COG1123 235 ETGPTEEILSN 245 (539)
T ss_pred EecCHHHHHhc
Confidence 99999998753
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-42 Score=378.66 Aligned_cols=219 Identities=26% Similarity=0.401 Sum_probs=184.2
Q ss_pred EEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC-CCccEEEECCEeCCh---
Q 008534 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP-TVGGSITYNDHPYSK--- 225 (562)
Q Consensus 150 l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~-~~~G~I~i~G~~~~~--- 225 (562)
|+++||+++| +++++|+||||+|++||+++|+||||||||||+++|+|.+. | +.+|+|.++|+++..
T Consensus 2 l~i~~l~~~~--------~~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~-~~~~~G~i~~~g~~~~~~~~ 72 (500)
T TIGR02633 2 LEMKGIVKTF--------GGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYP-HGTWDGEIYWSGSPLKASNI 72 (500)
T ss_pred EEEEeEEEEe--------CCeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC-CCCCCeEEEECCEECCCCCH
Confidence 7899999998 24579999999999999999999999999999999999653 3 258999999998752
Q ss_pred --hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCC-CccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHH
Q 008534 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPN-TLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (562)
Q Consensus 226 --~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrq 302 (562)
..++.|+||+|++.+++.+||+||+.++....... ........+++.++++.++|.+..+. ..+.+|||||||
T Consensus 73 ~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~----~~~~~LSgG~~q 148 (500)
T TIGR02633 73 RDTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVT----RPVGDYGGGQQQ 148 (500)
T ss_pred HHHHhCCEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCccc----CchhhCCHHHHH
Confidence 13467999999999999999999999864321110 12233445678899999999764421 234689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHH
Q 008534 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (562)
Q Consensus 303 Rv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~e 382 (562)
||+|||||+.+|+||||||||+|||+.++..+.+.|++++++|+|||++||++. .+..+||+|++|++|++++.|++++
T Consensus 149 rv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~-~~~~~~d~i~~l~~G~i~~~~~~~~ 227 (500)
T TIGR02633 149 LVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLN-EVKAVCDTICVIRDGQHVATKDMST 227 (500)
T ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHH-HHHHhCCEEEEEeCCeEeeecCccc
Confidence 999999999999999999999999999999999999999878999999999975 4678899999999999999998754
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-42 Score=331.66 Aligned_cols=218 Identities=28% Similarity=0.516 Sum_probs=184.9
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
+|+.+|++|+. .++.+|++||++++|||++||+||||||||||||.|+|.+. +.+|++.+||.++..
T Consensus 1 mi~a~nls~~~--------~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~--p~~G~v~~~g~~l~~~~~ 70 (259)
T COG4559 1 MIRAENLSYSL--------AGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELS--PDSGEVTLNGVPLNSWPP 70 (259)
T ss_pred CeeeeeeEEEe--------ecceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccC--CCCCeEeeCCcChhhCCH
Confidence 47899999987 46789999999999999999999999999999999999664 568999999999853
Q ss_pred -hccCcEEEEccCCCC-CCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHH
Q 008534 226 -SLKSKIGFVTQDDVL-FPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (562)
Q Consensus 226 -~~~~~igyV~Q~~~l-~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqR 303 (562)
++.++-+.+||+..+ || .||+|.+.++..-... .-...+..+.+..+|...++.+..... ...||||||||
T Consensus 71 ~~lA~~raVlpQ~s~laFp-Ftv~eVV~mGr~p~~~-g~~~~e~~~i~~~ala~~d~~~la~R~-----y~~LSGGEqQR 143 (259)
T COG4559 71 EELARHRAVLPQNSSLAFP-FTVQEVVQMGRIPHRS-GREPEEDERIAAQALAATDLSGLAGRD-----YRTLSGGEQQR 143 (259)
T ss_pred HHHHHHhhhcccCcccccc-eEHHHHHHhccccccc-CCCchhhHHHHHHHHHHcChhhhhccc-----hhhcCchHHHH
Confidence 345667899999766 66 6999999998643211 112234555677888888887766543 46899999999
Q ss_pred HHHHHHHhh------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEe
Q 008534 304 VCIGNEIII------NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (562)
Q Consensus 304 v~IAraLl~------~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~ 377 (562)
|.+||.|+. ++++||||||||+||...+..+++..++++++|..|++|-||++- ...+||||++|++||++..
T Consensus 144 VqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNL-AA~YaDrivll~~Grv~a~ 222 (259)
T COG4559 144 VQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNL-AAQYADRIVLLHQGRVIAS 222 (259)
T ss_pred HHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchH-HHHhhheeeeeeCCeEeec
Confidence 999999985 446999999999999999999999999999999999999999875 5689999999999999999
Q ss_pred cChHHHH
Q 008534 378 GKASEAM 384 (562)
Q Consensus 378 G~~~el~ 384 (562)
|++++++
T Consensus 223 g~p~~vl 229 (259)
T COG4559 223 GSPQDVL 229 (259)
T ss_pred CCHHHhc
Confidence 9999875
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-42 Score=377.79 Aligned_cols=216 Identities=25% Similarity=0.398 Sum_probs=183.5
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
+|+++||++.| +++.+|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++..
T Consensus 4 ~l~~~~l~~~~--------~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~i~~~~~ 73 (501)
T PRK11288 4 YLSFDGIGKTF--------PGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQ--PDAGSILIDGQEMRFAST 73 (501)
T ss_pred eEEEeeeEEEE--------CCEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEECCCCCH
Confidence 69999999998 24569999999999999999999999999999999999543 568999999998742
Q ss_pred --hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHH
Q 008534 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (562)
Q Consensus 226 --~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqR 303 (562)
.+++.|+||+|++.+++.+||+||+.++............+..+++.++++.++|.+..+.. +.+||||||||
T Consensus 74 ~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgGq~qr 148 (501)
T PRK11288 74 TAALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTP-----LKYLSIGQRQM 148 (501)
T ss_pred HHHHhCCEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCc-----hhhCCHHHHHH
Confidence 24678999999999999999999999864211101122334456788999999997655543 56899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecCh
Q 008534 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 380 (562)
Q Consensus 304 v~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~ 380 (562)
|+|||||+.+|+||||||||+|||+.++..+.+.|++++++|+|||++||++. .+..+||+|++|++|+++..++.
T Consensus 149 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~-~~~~~~d~i~~l~~G~i~~~~~~ 224 (501)
T PRK11288 149 VEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRME-EIFALCDAITVFKDGRYVATFDD 224 (501)
T ss_pred HHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEeecCc
Confidence 99999999999999999999999999999999999999877999999999976 46788999999999999887653
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-42 Score=386.18 Aligned_cols=227 Identities=24% Similarity=0.389 Sum_probs=188.4
Q ss_pred eeEEEEeEEEEEeecc-c-C-CccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCC
Q 008534 148 IYLKFTDVTYKVILKG-M-T-SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS 224 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~-~-~-~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~ 224 (562)
..|+++||++.|...+ . . ....+.+|+||||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++.
T Consensus 312 ~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~--p~~G~I~~~g~~i~ 389 (623)
T PRK10261 312 PILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVE--SQGGEIIFNGQRID 389 (623)
T ss_pred ceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCCcEEEECCEECC
Confidence 3699999999983110 0 0 0012469999999999999999999999999999999999653 56899999999874
Q ss_pred h-------hccCcEEEEccCC--CCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCC-ccccccccCcccC
Q 008534 225 K-------SLKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVR 294 (562)
Q Consensus 225 ~-------~~~~~igyV~Q~~--~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~ 294 (562)
. .+++.|+||+|++ .+++.+||.||+.+...... .....+..+++.++++.+||+ +..++ +++
T Consensus 390 ~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~L~~~gL~~~~~~~-----~~~ 462 (623)
T PRK10261 390 TLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHG--LLPGKAAAARVAWLLERVGLLPEHAWR-----YPH 462 (623)
T ss_pred cCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCCHHHhhC-----Ccc
Confidence 2 2456899999997 58889999999998654321 112334456788999999996 44454 467
Q ss_pred CCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCe
Q 008534 295 GVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGS 373 (562)
Q Consensus 295 ~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~ 373 (562)
+|||||||||+|||||+.+|+||||||||+|||+.++..+++.|++++++ |.|||++||++. .+..+||+|++|++|+
T Consensus 463 ~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~-~v~~~~dri~vl~~G~ 541 (623)
T PRK10261 463 EFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMA-VVERISHRVAVMYLGQ 541 (623)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCE
Confidence 99999999999999999999999999999999999999999999999765 899999999976 4678999999999999
Q ss_pred EEEecChHHHH
Q 008534 374 LLYFGKASEAM 384 (562)
Q Consensus 374 iv~~G~~~el~ 384 (562)
+++.|+++++.
T Consensus 542 iv~~g~~~~i~ 552 (623)
T PRK10261 542 IVEIGPRRAVF 552 (623)
T ss_pred EEEecCHHHHh
Confidence 99999999874
|
|
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=352.72 Aligned_cols=225 Identities=24% Similarity=0.423 Sum_probs=183.6
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC---CCCccEEEECCEeCC
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME---PTVGGSITYNDHPYS 224 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~---~~~~G~I~i~G~~~~ 224 (562)
..|+++||++.| .++.+|+++||+|++||+++|+||||||||||+++|+|.+.. ++.+|+|.++|.++.
T Consensus 44 ~~l~i~nl~~~~--------~~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~ 115 (305)
T PRK14264 44 AKLSVEDLDVYY--------GDDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIY 115 (305)
T ss_pred ceEEEEEEEEEe--------CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcc
Confidence 369999999998 245799999999999999999999999999999999996532 146899999999874
Q ss_pred h------hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCC---------CCcc-HHHHHHHHHHHHHHcCCCccccccc
Q 008534 225 K------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLP---------NTLT-KQQKEKRAIDVINELGLERCQDTMI 288 (562)
Q Consensus 225 ~------~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~---------~~~~-~~~~~~~v~~~l~~lgL~~~~~t~v 288 (562)
. .+++.|+||+|++.+|+ .||+||+.++...... .... .....+.+.++++.+++.+......
T Consensus 116 ~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 194 (305)
T PRK14264 116 QDGVNLVELRKRVGMVFQSPNPFP-KSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRL 194 (305)
T ss_pred cccccHHHHhhceEEEccCCcccc-ccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHh
Confidence 2 34568999999999987 5999999987532100 0011 1223456788899888854332222
Q ss_pred cCcccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEE-E
Q 008534 289 GGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKL-I 367 (562)
Q Consensus 289 g~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i-~ 367 (562)
+..+.+|||||||||+|||||+.+|+||||||||+|||+.++..+.+.|+++++ ++|||++||++.. +..+||++ +
T Consensus 195 -~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~~-i~~~~d~i~~ 271 (305)
T PRK14264 195 -DDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAE-EYTVVVVTHNMQQ-AARISDQTAV 271 (305)
T ss_pred -cCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHHH-HHHhcCEEEE
Confidence 345678999999999999999999999999999999999999999999999976 5899999999764 67889997 5
Q ss_pred EEcCCeEEEecChHHHH
Q 008534 368 LLGKGSLLYFGKASEAM 384 (562)
Q Consensus 368 vL~~G~iv~~G~~~el~ 384 (562)
+|++|++++.|+++++.
T Consensus 272 ~l~~G~i~~~g~~~~~~ 288 (305)
T PRK14264 272 FLTGGELVEYDDTDKIF 288 (305)
T ss_pred EecCCEEEEeCCHHHHH
Confidence 78999999999988764
|
|
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-42 Score=340.22 Aligned_cols=209 Identities=30% Similarity=0.547 Sum_probs=171.5
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
.|+++|+++.|. ...+.+|+|+||+|++|++++|+||||||||||+++|+|.. ++.+|+|.++|.++..
T Consensus 2 ~l~~~~l~~~~~------~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~--~~~~G~i~~~g~~~~~~~~ 73 (220)
T cd03245 2 RIEFRNVSFSYP------NQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLY--KPTSGSVLLDGTDIRQLDP 73 (220)
T ss_pred eEEEEEEEEEcC------CCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCc--CCCCCeEEECCEEhHHCCH
Confidence 478999999872 11356999999999999999999999999999999999964 3568999999998642
Q ss_pred -hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCcccccccc------CcccCCCCh
Q 008534 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIG------GSFVRGVSG 298 (562)
Q Consensus 226 -~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg------~~~~~~LSG 298 (562)
..++.++|++|++.+++ .||.||+.+.... .. ...+.++++.+++.+..+..+. ...+..|||
T Consensus 74 ~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~-----~~----~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSg 143 (220)
T cd03245 74 ADLRRNIGYVPQDVTLFY-GTLRDNITLGAPL-----AD----DERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSG 143 (220)
T ss_pred HHHHhhEEEeCCCCcccc-chHHHHhhcCCCC-----CC----HHHHHHHHHHcCcHHHHHhccccccceecCCCccCCH
Confidence 24567999999999887 6999999874211 11 2235567777777665444321 123468999
Q ss_pred hHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEec
Q 008534 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (562)
Q Consensus 299 GqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G 378 (562)
|||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++.. + +.||++++|++|++++.|
T Consensus 144 G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~~-~-~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 144 GQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLG-DKTLIIITHRPSL-L-DLVDRIIVMDSGRIVADG 220 (220)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHHH-H-HhCCEEEEEeCCeEeecC
Confidence 999999999999999999999999999999999999999999876 4899999999763 4 799999999999998764
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-42 Score=325.75 Aligned_cols=215 Identities=29% Similarity=0.496 Sum_probs=188.4
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhcc
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~ 228 (562)
.+...+++.+|+. ..+.+|+|||++|.+||.++++||||||||||||+++|... |..|+|.+||+++... -
T Consensus 3 ~l~~~~~sl~y~g------~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~--P~~G~i~l~~r~i~gP-g 73 (259)
T COG4525 3 MLNVSHLSLSYEG------KPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVT--PSRGSIQLNGRRIEGP-G 73 (259)
T ss_pred eeehhheEEecCC------cchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcC--cccceEEECCEeccCC-C
Confidence 4677888888831 23569999999999999999999999999999999999653 5689999999998632 1
Q ss_pred CcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHH
Q 008534 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGN 308 (562)
Q Consensus 229 ~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAr 308 (562)
..-|.|||++.|+|.++|.||+.|+..++ ++.+.++.+++.+++..+||.+..+. ++.+|||||||||.|||
T Consensus 74 aergvVFQ~~~LlPWl~~~dNvafgL~l~---Gi~k~~R~~~a~q~l~~VgL~~~~~~-----~i~qLSGGmrQRvGiAR 145 (259)
T COG4525 74 AERGVVFQNEALLPWLNVIDNVAFGLQLR---GIEKAQRREIAHQMLALVGLEGAEHK-----YIWQLSGGMRQRVGIAR 145 (259)
T ss_pred ccceeEeccCccchhhHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHhCccccccc-----ceEeecchHHHHHHHHH
Confidence 23589999999999999999999999876 57788999999999999999876654 46799999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCcEEEEEecCCChHHHhcCCEEEEEcC--CeEEEecChH
Q 008534 309 EIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGK--GSLLYFGKAS 381 (562)
Q Consensus 309 aLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~Tvii~tH~~~~~i~~~~D~i~vL~~--G~iv~~G~~~ 381 (562)
||..+|++|+||||+++||.-+++.+.+.|-++.+ .|+.+++|||+..+. .-++++++||+. |||+..=+++
T Consensus 146 ALa~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEA-lflatrLvvlsp~pgRvv~~~~~d 220 (259)
T COG4525 146 ALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEA-LFLATRLVVLSPGPGRVVERLPLD 220 (259)
T ss_pred HhhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHH-HhhhheeEEecCCCceeeEecCCC
Confidence 99999999999999999999999999999999875 499999999998764 457999999985 7999887665
|
|
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-42 Score=348.76 Aligned_cols=219 Identities=23% Similarity=0.388 Sum_probs=179.4
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhcc
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~ 228 (562)
.|+++||+++|. .++.+|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++....+
T Consensus 6 ~l~~~~l~~~~~-------~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~ 76 (272)
T PRK15056 6 GIVVNDVTVTWR-------NGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVR--LASGKISILGQPTRQALQ 76 (272)
T ss_pred eEEEEeEEEEec-------CCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEhHHhhc
Confidence 589999999982 23579999999999999999999999999999999999643 568999999998754333
Q ss_pred -CcEEEEccCCCCC--CCCCHHHHHHHHHhhCCC-CCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHH
Q 008534 229 -SKIGFVTQDDVLF--PHLTVKETLTYAALLRLP-NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (562)
Q Consensus 229 -~~igyV~Q~~~l~--~~lTV~enl~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 304 (562)
+.++|++|++.+. ...++++|+.++...... ........+.++.++++.+||.+..++. +..||||||||+
T Consensus 77 ~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgG~~qrv 151 (272)
T PRK15056 77 KNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQ-----IGELSGGQKKRV 151 (272)
T ss_pred cceEEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCC-----cccCCHHHHHHH
Confidence 4699999997652 234789998764211000 0011123345677889999998766654 468999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHH
Q 008534 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (562)
Q Consensus 305 ~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el 383 (562)
+|||||+.+|+||||||||+|||+.++..+.+.|++++++|+|||++||++. .+.+.||+++++ +|++++.|+++++
T Consensus 152 ~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~-~~~~~~d~v~~~-~G~i~~~g~~~~~ 228 (272)
T PRK15056 152 FLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLG-SVTEFCDYTVMV-KGTVLASGPTETT 228 (272)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEE-CCEEEeecCHHhc
Confidence 9999999999999999999999999999999999999877999999999975 467899999888 8999999998876
|
|
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-42 Score=340.56 Aligned_cols=206 Identities=23% Similarity=0.377 Sum_probs=171.0
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC---CCccEEEECCEeCChh-c-cCcEEEEccCCC--CCCCC
Q 008534 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP---TVGGSITYNDHPYSKS-L-KSKIGFVTQDDV--LFPHL 244 (562)
Q Consensus 172 iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~---~~~G~I~i~G~~~~~~-~-~~~igyV~Q~~~--l~~~l 244 (562)
+|+|+||+|++|++++|+||||||||||+++|+|... | +.+|+|.++|+++... . ++.++||+|++. +++.+
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~ 79 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLP-PGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLF 79 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-CccCccccEEEECCEechhhhhhhheeEEEecCchhhcCccc
Confidence 5899999999999999999999999999999999653 3 1689999999987532 2 357999999984 55678
Q ss_pred CHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCC
Q 008534 245 TVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTS 324 (562)
Q Consensus 245 TV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTs 324 (562)
|+.||+.+...... .......+++.++++.+++.+.. ...+..+..|||||||||+|||||+.+|+||||||||+
T Consensus 80 t~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~ 154 (230)
T TIGR02770 80 TMGNHAIETLRSLG---KLSKQARALILEALEAVGLPDPE--EVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTT 154 (230)
T ss_pred CHHHHHHHHHHHcC---ccHHHHHHHHHHHHHHcCCCchH--HHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 99999987643221 11233455688999999997320 01123457899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHH
Q 008534 325 GLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (562)
Q Consensus 325 gLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~ 384 (562)
|||+.++..+.+.|++++++ |+|||++||++. ++..+||++++|++|++++.|+++++.
T Consensus 155 ~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 214 (230)
T TIGR02770 155 DLDVVNQARVLKLLRELRQLFGTGILLITHDLG-VVARIADEVAVMDDGRIVERGTVKEIF 214 (230)
T ss_pred ccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999764 899999999976 477889999999999999999998874
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-42 Score=377.85 Aligned_cols=216 Identities=20% Similarity=0.312 Sum_probs=182.3
Q ss_pred EEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh-----h
Q 008534 152 FTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-----S 226 (562)
Q Consensus 152 ~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~-----~ 226 (562)
++||+++| +++++|+||||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|+++.. .
T Consensus 1 ~~nl~~~~--------~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~ 70 (491)
T PRK10982 1 MSNISKSF--------PGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQ--KDSGSILFQGKEIDFKSSKEA 70 (491)
T ss_pred CCceEEEe--------CCEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC--CCceEEEECCEECCCCCHHHH
Confidence 36888887 24579999999999999999999999999999999999653 468999999998742 2
Q ss_pred ccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHH
Q 008534 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (562)
Q Consensus 227 ~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~I 306 (562)
+++.++||+|++.+++.+||+||+.++............+..+++.++++.+++.+..++. +.+|||||||||+|
T Consensus 71 ~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgGq~qrv~l 145 (491)
T PRK10982 71 LENGISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAK-----VATLSVSQMQMIEI 145 (491)
T ss_pred HhCCEEEEecccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCc-----hhhCCHHHHHHHHH
Confidence 3567999999999999999999998764211010012333445788899999998666654 46899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHH
Q 008534 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (562)
Q Consensus 307 AraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el 383 (562)
||||+.+|+||||||||+|||+.++..+.+.|+++++.|+|||++||++. .+..+||+|++|++|++++.|+++++
T Consensus 146 A~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 221 (491)
T PRK10982 146 AKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKME-EIFQLCDEITILRDGQWIATQPLAGL 221 (491)
T ss_pred HHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEeecChhhC
Confidence 99999999999999999999999999999999999878999999999975 46788999999999999999987664
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-42 Score=377.96 Aligned_cols=221 Identities=29% Similarity=0.449 Sum_probs=184.9
Q ss_pred EEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEEC----------
Q 008534 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYN---------- 219 (562)
Q Consensus 150 l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~---------- 219 (562)
|+++|++++| +++.+|+|+||+|++|++++|+||||||||||+++|+|.+..++.+|+|.++
T Consensus 1 l~~~~l~~~~--------~~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~ 72 (520)
T TIGR03269 1 IEVKNLTKKF--------DGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYV 72 (520)
T ss_pred CEEEEEEEEE--------CCeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEecccccccccc
Confidence 4789999998 2457999999999999999999999999999999999964212458999997
Q ss_pred -------------CEeC----------C----hhccCcEEEEccC-CCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHH
Q 008534 220 -------------DHPY----------S----KSLKSKIGFVTQD-DVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRA 271 (562)
Q Consensus 220 -------------G~~~----------~----~~~~~~igyV~Q~-~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v 271 (562)
|.++ . ..+++.++||+|+ +.+|+.+||+||+.++.... .....+..+++
T Consensus 73 ~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~ 149 (520)
T TIGR03269 73 ERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEI---GYEGKEAVGRA 149 (520)
T ss_pred ccccccccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHc---CCCHHHHHHHH
Confidence 3222 0 1235679999998 67888899999999875432 12344455678
Q ss_pred HHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCcEEEE
Q 008534 272 IDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVT 350 (562)
Q Consensus 272 ~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~Tvii 350 (562)
.++++.+||.+..+.. +.+|||||||||+|||||+.+|+||||||||++||+.++..+++.|+++++ .|+|||+
T Consensus 150 ~~~l~~~gl~~~~~~~-----~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvii 224 (520)
T TIGR03269 150 VDLIEMVQLSHRITHI-----ARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVL 224 (520)
T ss_pred HHHHHHcCChhhhhcC-----cccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEE
Confidence 8999999998765543 578999999999999999999999999999999999999999999999965 4899999
Q ss_pred EecCCChHHHhcCCEEEEEcCCeEEEecChHHHHHHH
Q 008534 351 TIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYF 387 (562)
Q Consensus 351 ~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~~~f 387 (562)
+||++.. +.++||+|++|++|++++.|+++++...+
T Consensus 225 vtHd~~~-~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 260 (520)
T TIGR03269 225 TSHWPEV-IEDLSDKAIWLENGEIKEEGTPDEVVAVF 260 (520)
T ss_pred EeCCHHH-HHHhcCEEEEEeCCEEeeecCHHHHHHHH
Confidence 9999764 66789999999999999999998876654
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-41 Score=343.52 Aligned_cols=222 Identities=24% Similarity=0.401 Sum_probs=181.6
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC-C--CCccEEEECCEeCC
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-P--TVGGSITYNDHPYS 224 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~-~--~~~G~I~i~G~~~~ 224 (562)
..|+++|++++| .++++|+|+||+|++||+++|+||||||||||+++|+|.... | +.+|+|.++|.++.
T Consensus 15 ~~l~~~~l~~~~--------~~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~ 86 (265)
T PRK14252 15 QKSEVNKLNFYY--------GGYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVN 86 (265)
T ss_pred ceEEEEEEEEEE--------CCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCcccc
Confidence 469999999998 235799999999999999999999999999999999996532 2 15899999997652
Q ss_pred --------hhccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCcc-HHHHHHHHHHHHHHcCCCccccccccCcccCC
Q 008534 225 --------KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLT-KQQKEKRAIDVINELGLERCQDTMIGGSFVRG 295 (562)
Q Consensus 225 --------~~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~-~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~ 295 (562)
..+++.++|++|++.+|+. ||+||+.++.... ... ....++++.++++.+++.+...... +..+..
T Consensus 87 ~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~---~~~~~~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~~ 161 (265)
T PRK14252 87 ILSPEVDPIEVRMRISMVFQKPNPFPK-SIFENVAYGLRIR---GVKRRSILEERVENALRNAALWDEVKDRL-GDLAFN 161 (265)
T ss_pred ccccccCHHHHhccEEEEccCCcCCcc-hHHHHHHhHHHHc---CCChHHHHHHHHHHHHHHcCCchhhhHHH-hCCccc
Confidence 1346779999999999985 9999999865322 111 2223456777788777743211111 234568
Q ss_pred CChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEE
Q 008534 296 VSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLL 375 (562)
Q Consensus 296 LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv 375 (562)
|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ +.|||++||++. .+.++||++++|++|+++
T Consensus 162 LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~~tiiivth~~~-~~~~~~d~i~~l~~G~i~ 239 (265)
T PRK14252 162 LSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKN-KVTILIVTHNMQ-QAARVSDYTAYMYMGELI 239 (265)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEecCHH-HHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999975 689999999975 467889999999999999
Q ss_pred EecChHHHH
Q 008534 376 YFGKASEAM 384 (562)
Q Consensus 376 ~~G~~~el~ 384 (562)
+.|+++++.
T Consensus 240 ~~g~~~~~~ 248 (265)
T PRK14252 240 EFGATDTIF 248 (265)
T ss_pred EeCCHHHHH
Confidence 999988764
|
|
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-41 Score=343.11 Aligned_cols=221 Identities=25% Similarity=0.439 Sum_probs=180.7
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEEC------CEe
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYN------DHP 222 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~------G~~ 222 (562)
.|+++|++++| +++.+|+||||+|++||+++|+||||||||||+++|+|... +.+|+|.++ |.+
T Consensus 10 ~i~~~~~~~~~--------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~--~~~G~v~~~G~~~~~g~~ 79 (257)
T PRK14246 10 VFNISRLYLYI--------NDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIE--IYDSKIKVDGKVLYFGKD 79 (257)
T ss_pred heeeeeEEEec--------CCceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCcCceeEcCEEEECCcc
Confidence 69999999998 35679999999999999999999999999999999999543 345555554 455
Q ss_pred CC----hhccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCCh
Q 008534 223 YS----KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSG 298 (562)
Q Consensus 223 ~~----~~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSG 298 (562)
+. ..+++.++|++|++.+|+.+||+||+.++..... ...+.+..+++.++++.+++.+...... +..+..|||
T Consensus 80 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~LS~ 156 (257)
T PRK14246 80 IFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHG--IKEKREIKKIVEECLRKVGLWKEVYDRL-NSPASQLSG 156 (257)
T ss_pred cccCCHHHHhcceEEEccCCccCCCCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCCccchhhh-cCCcccCCH
Confidence 42 1346789999999999998999999998753221 1123344566888999999863211111 224578999
Q ss_pred hHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEec
Q 008534 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (562)
Q Consensus 299 GqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G 378 (562)
|||||++|||||+.+|++|||||||+|||+.++..+.+.|.++.+ +.|||++||++. .+...||++++|++|++++.|
T Consensus 157 G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiilvsh~~~-~~~~~~d~v~~l~~g~i~~~g 234 (257)
T PRK14246 157 GQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKN-EIAIVIVSHNPQ-QVARVADYVAFLYNGELVEWG 234 (257)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CcEEEEEECCHH-HHHHhCCEEEEEECCEEEEEC
Confidence 999999999999999999999999999999999999999999865 699999999975 466889999999999999999
Q ss_pred ChHHHH
Q 008534 379 KASEAM 384 (562)
Q Consensus 379 ~~~el~ 384 (562)
+++++.
T Consensus 235 ~~~~~~ 240 (257)
T PRK14246 235 SSNEIF 240 (257)
T ss_pred CHHHHH
Confidence 998865
|
|
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-42 Score=341.09 Aligned_cols=214 Identities=33% Similarity=0.517 Sum_probs=170.7
Q ss_pred EEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh----
Q 008534 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (562)
Q Consensus 150 l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~---- 225 (562)
|+++|++++|. ..+.+|+|+||+|++|++++|+||||||||||+++|+|.. ++.+|+|.++|.++..
T Consensus 1 l~~~~l~~~~~-------~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~--~~~~G~v~~~g~~~~~~~~~ 71 (236)
T cd03253 1 IEFENVTFAYD-------PGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFY--DVSSGSILIDGQDIREVTLD 71 (236)
T ss_pred CEEEEEEEEeC-------CCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccc--CCCCCEEEECCEEhhhCCHH
Confidence 46899999872 1356999999999999999999999999999999999954 3568999999998742
Q ss_pred hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHH-----HHHHHHHHcCCCccccccccCcccCCCChhH
Q 008534 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEK-----RAIDVINELGLERCQDTMIGGSFVRGVSGGE 300 (562)
Q Consensus 226 ~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~-----~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGq 300 (562)
.+++.++|++|++.+|+ .||+||+.++... ........ .+.+.++.+ +...++.+ +..+..|||||
T Consensus 72 ~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~-----~~~~~~~~~~~~~~l~~~~~~l--~~~~~~~~-~~~~~~LS~G~ 142 (236)
T cd03253 72 SLRRAIGVVPQDTVLFN-DTIGYNIRYGRPD-----ATDEEVIEAAKAAQIHDKIMRF--PDGYDTIV-GERGLKLSGGE 142 (236)
T ss_pred HHHhhEEEECCCChhhc-chHHHHHhhcCCC-----CCHHHHHHHHHHcCcHHHHHhc--cccccchh-hcCCCcCCHHH
Confidence 34667999999999986 6999999875321 11111111 122223322 22223322 23357899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecCh
Q 008534 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 380 (562)
Q Consensus 301 rqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~ 380 (562)
||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ |+|||++||++.. + ..||++++|++|++++.|+.
T Consensus 143 ~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sh~~~~-~-~~~d~~~~l~~g~i~~~~~~ 219 (236)
T cd03253 143 KQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSK-GRTTIVIAHRLST-I-VNADKIIVLKDGRIVERGTH 219 (236)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHH-H-HhCCEEEEEECCEEEeeCCH
Confidence 9999999999999999999999999999999999999999976 9999999999764 4 45999999999999999998
Q ss_pred HHHH
Q 008534 381 SEAM 384 (562)
Q Consensus 381 ~el~ 384 (562)
+++.
T Consensus 220 ~~~~ 223 (236)
T cd03253 220 EELL 223 (236)
T ss_pred HHHh
Confidence 7764
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=331.95 Aligned_cols=190 Identities=31% Similarity=0.431 Sum_probs=162.0
Q ss_pred EEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh----
Q 008534 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (562)
Q Consensus 150 l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~---- 225 (562)
|+++|+++.|. ++.+|+|+||++++||+++|+||||||||||+++|+|....++.+|+|.+||.++..
T Consensus 1 l~~~~l~~~~~--------~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~ 72 (200)
T cd03217 1 LEIKDLHVSVG--------GKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPE 72 (200)
T ss_pred CeEEEEEEEeC--------CEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHH
Confidence 46899999882 357999999999999999999999999999999999964123568999999998753
Q ss_pred h-ccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHH
Q 008534 226 S-LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (562)
Q Consensus 226 ~-~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 304 (562)
. .+..++|++|++.+++.+++++++. . ....||||||||+
T Consensus 73 ~~~~~~i~~v~q~~~~~~~~~~~~~l~----------------------------------~-----~~~~LS~G~~qrv 113 (200)
T cd03217 73 ERARLGIFLAFQYPPEIPGVKNADFLR----------------------------------Y-----VNEGFSGGEKKRN 113 (200)
T ss_pred HHhhCcEEEeecChhhccCccHHHHHh----------------------------------h-----ccccCCHHHHHHH
Confidence 1 2345999999999998888887760 0 1136999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHh-cCCEEEEEcCCeEEEecChHHH
Q 008534 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFH-KFDKLILLGKGSLLYFGKASEA 383 (562)
Q Consensus 305 ~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~-~~D~i~vL~~G~iv~~G~~~el 383 (562)
+|||||+.+|++|||||||+|||+.++..+.+.|++++++++|||++||++. .+.. .||++++|++|++++.|+ .++
T Consensus 114 ~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~-~~~~~~~d~i~~l~~G~i~~~~~-~~~ 191 (200)
T cd03217 114 EILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQR-LLDYIKPDRVHVLYDGRIVKSGD-KEL 191 (200)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhhCCEEEEEECCEEEEEcc-HHH
Confidence 9999999999999999999999999999999999999877899999999976 3555 799999999999999994 446
Q ss_pred HHHHH
Q 008534 384 MAYFS 388 (562)
Q Consensus 384 ~~~f~ 388 (562)
..+|.
T Consensus 192 ~~~~~ 196 (200)
T cd03217 192 ALEIE 196 (200)
T ss_pred Hhhhc
Confidence 65553
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. |
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-41 Score=343.15 Aligned_cols=200 Identities=29% Similarity=0.472 Sum_probs=172.3
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh----hccCcEEEEccCCCCCCCCCHH
Q 008534 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHLTVK 247 (562)
Q Consensus 172 iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~----~~~~~igyV~Q~~~l~~~lTV~ 247 (562)
+|+||||+|++|++++|+||||||||||+++|+|.. ++ +|+|.++|+++.. .+++.++|++|++.+++.+||+
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~--~~-~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 87 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLL--PG-SGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVF 87 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCC--CC-CeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHH
Confidence 799999999999999999999999999999999964 34 7999999998742 3456799999998888789999
Q ss_pred HHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhh-------CCCEEEEe
Q 008534 248 ETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIII-------NPSLLFLD 320 (562)
Q Consensus 248 enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~-------~P~iLlLD 320 (562)
||+.+..... ....+..+++.++++.++|.+..++. ++.||||||||++|||||+. +|++||||
T Consensus 88 ~nl~~~~~~~----~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllD 158 (248)
T PRK03695 88 QYLTLHQPDK----TRTEAVASALNEVAEALGLDDKLGRS-----VNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLD 158 (248)
T ss_pred HHHHhcCccC----CCcHHHHHHHHHHHHHcCCHhHhcCC-----cccCCHHHHHHHHHHHHHhccccccCCCCCEEEEc
Confidence 9999863211 12333456788999999997665553 46899999999999999997 67999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHH
Q 008534 321 EPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (562)
Q Consensus 321 EPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~ 384 (562)
|||+|||+.++..+.+.|++++++|+|||++||++. .+..+||++++|++|++++.|+++++.
T Consensus 159 EPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 221 (248)
T PRK03695 159 EPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLN-HTLRHADRVWLLKQGKLLASGRRDEVL 221 (248)
T ss_pred CCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 999999999999999999999877899999999975 477899999999999999999988763
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=384.01 Aligned_cols=225 Identities=22% Similarity=0.360 Sum_probs=186.3
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeC-----
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPY----- 223 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~----- 223 (562)
+|+++||++.|.. .....++|+||||+|++||++||+||||||||||+++|+|.+. +.+|.|.++|..+
T Consensus 12 ~l~v~~l~~~y~~----~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~--p~~G~i~~~g~~~~~~~~ 85 (623)
T PRK10261 12 VLAVENLNIAFMQ----EQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLE--QAGGLVQCDKMLLRRRSR 85 (623)
T ss_pred eEEEeceEEEecC----CCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCC--CCCeEEEECCEEeccccc
Confidence 6999999999831 1123579999999999999999999999999999999999653 4589999998643
Q ss_pred --------Ch----hcc-CcEEEEccCC--CCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccc
Q 008534 224 --------SK----SLK-SKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMI 288 (562)
Q Consensus 224 --------~~----~~~-~~igyV~Q~~--~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~v 288 (562)
.. .++ +.||||+|++ .+++.+||.||+.++..... .....+..+++.++++.+||++..+ .
T Consensus 86 ~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gL~~~~~--~ 161 (623)
T PRK10261 86 QVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQ--GASREEAMVEAKRMLDQVRIPEAQT--I 161 (623)
T ss_pred cccccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCChhh--H
Confidence 11 122 4799999998 68888999999999865321 2334455677889999999964210 1
Q ss_pred cCcccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEE
Q 008534 289 GGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLI 367 (562)
Q Consensus 289 g~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~ 367 (562)
.+.++.+|||||||||+|||||+.+|+||||||||++||+.++.++++.|++++++ |+|||+|||++. .+.++||+|+
T Consensus 162 ~~~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~-~~~~~adri~ 240 (623)
T PRK10261 162 LSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMG-VVAEIADRVL 240 (623)
T ss_pred HhCCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEE
Confidence 13356799999999999999999999999999999999999999999999999765 899999999975 4678999999
Q ss_pred EEcCCeEEEecChHHHH
Q 008534 368 LLGKGSLLYFGKASEAM 384 (562)
Q Consensus 368 vL~~G~iv~~G~~~el~ 384 (562)
+|++|++++.|+++++.
T Consensus 241 vl~~G~i~~~g~~~~~~ 257 (623)
T PRK10261 241 VMYQGEAVETGSVEQIF 257 (623)
T ss_pred EeeCCeecccCCHHHhh
Confidence 99999999999988764
|
|
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-42 Score=319.73 Aligned_cols=212 Identities=32% Similarity=0.509 Sum_probs=182.5
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
.|+++++++.+.. ......||++|++.|++||.+||||||||||||||-+++|. .. +++|+|.+.|+++.+
T Consensus 6 ii~~~~l~ktvg~----~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGL-d~-~ssGeV~l~G~~L~~ldE 79 (228)
T COG4181 6 IIEVHHLSKTVGQ----GEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGL-DD-PSSGEVRLLGQPLHKLDE 79 (228)
T ss_pred eeehhhhhhhhcC----CCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcC-CC-CCCceEEEcCcchhhcCH
Confidence 5888888887621 23456899999999999999999999999999999999994 33 568999999999852
Q ss_pred ----hcc-CcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhH
Q 008534 226 ----SLK-SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGE 300 (562)
Q Consensus 226 ----~~~-~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGq 300 (562)
.+| ++||||||...|.|+||..||+...+.++.. +..+....+.++++.+||.+..+. ++.+|||||
T Consensus 80 d~rA~~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge---~~~~~~~~A~~lL~~vGLg~Rl~H-----yP~qLSGGE 151 (228)
T COG4181 80 DARAALRARHVGFVFQSFHLIPNLTALENVALPLELRGE---SSADSRAGAKALLEAVGLGKRLTH-----YPAQLSGGE 151 (228)
T ss_pred HHHHHhhccceeEEEEeeeccccchhhhhccchhhhcCC---ccccHHHHHHHHHHHhCccccccc-----CccccCchH
Confidence 233 6799999999999999999999998877632 233445567889999999876654 568999999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCcEEEEEecCCChHHHhcCCEEEEEcCCeEEE
Q 008534 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (562)
Q Consensus 301 rqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~ 376 (562)
+|||+||||++..|+|||.||||-+||..+..+|.+.|-.+.+ .|.|.|++|||+. +..-|||++-|.+|+++.
T Consensus 152 QQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~--LA~Rc~R~~r~~~G~l~~ 226 (228)
T COG4181 152 QQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQ--LAARCDRQLRLRSGRLVE 226 (228)
T ss_pred HHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHH--HHHhhhheeeeecceecc
Confidence 9999999999999999999999999999999999999999865 4999999999975 567899999999999975
|
|
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-41 Score=330.72 Aligned_cols=199 Identities=24% Similarity=0.422 Sum_probs=169.6
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCC---h
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---K 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~---~ 225 (562)
+++++|+++.| +.+.+|+||||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++. .
T Consensus 1 ~l~~~~l~~~~--------~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~v~~~g~~~~~~~~ 70 (204)
T PRK13538 1 MLEARNLACER--------DERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLAR--PDAGEVLWQGEPIRRQRD 70 (204)
T ss_pred CeEEEEEEEEE--------CCEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEcccchH
Confidence 37899999998 23569999999999999999999999999999999999643 56899999999874 2
Q ss_pred hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHH
Q 008534 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC 305 (562)
Q Consensus 226 ~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ 305 (562)
.+++.++|++|++.+++.+||.||+.+...... . ...+++.++++.+||.+..++. +..||||||||++
T Consensus 71 ~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~---~---~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~G~~qrl~ 139 (204)
T PRK13538 71 EYHQDLLYLGHQPGIKTELTALENLRFYQRLHG---P---GDDEALWEALAQVGLAGFEDVP-----VRQLSAGQQRRVA 139 (204)
T ss_pred HhhhheEEeCCccccCcCCcHHHHHHHHHHhcC---c---cHHHHHHHHHHHcCCHHHhhCC-----hhhcCHHHHHHHH
Confidence 356789999999999999999999998754321 1 2245678899999998665553 4689999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEE
Q 008534 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL 369 (562)
Q Consensus 306 IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL 369 (562)
|||||+.+|++|||||||+|||+.++..+.+.|++++++|.|||++||++.. +....+|++++
T Consensus 140 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~-i~~~~~~~~~~ 202 (204)
T PRK13538 140 LARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLP-VASDKVRKLRL 202 (204)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhh-hccCCceEEec
Confidence 9999999999999999999999999999999999997778999999999764 55555777776
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=377.52 Aligned_cols=226 Identities=27% Similarity=0.470 Sum_probs=186.3
Q ss_pred eEEEEeEEEEEeeccc---CCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh
Q 008534 149 YLKFTDVTYKVILKGM---TSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~---~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~ 225 (562)
+|+++||++.|...+- ....++.+|+||||+|++||+++|+||||||||||+++|+|.+ + .+|+|+++|+++..
T Consensus 275 ~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~--~-~~G~i~~~g~~i~~ 351 (529)
T PRK15134 275 LLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI--N-SQGEIWFDGQPLHN 351 (529)
T ss_pred cccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcC--C-CCcEEEECCEEccc
Confidence 6999999999831000 0001357999999999999999999999999999999999964 3 58999999988642
Q ss_pred -------hccCcEEEEccCC--CCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCC-ccccccccCcccCC
Q 008534 226 -------SLKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRG 295 (562)
Q Consensus 226 -------~~~~~igyV~Q~~--~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~~ 295 (562)
.+++.++||+|++ .+++.+||+||+.++...+.. .....+.++++.++++.++|. +..+. .+.+
T Consensus 352 ~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~~ 425 (529)
T PRK15134 352 LNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQP-TLSAAQREQQVIAVMEEVGLDPETRHR-----YPAE 425 (529)
T ss_pred cchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccc-cCChHHHHHHHHHHHHHcCCCHHHHhc-----CCcc
Confidence 1356799999997 488889999999987532210 122334456788999999996 34554 4578
Q ss_pred CChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeE
Q 008534 296 VSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374 (562)
Q Consensus 296 LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~i 374 (562)
|||||||||+|||||+.+|+||||||||+|||+.++..+++.|++++++ |+|||++||++.. +..+||+|++|++|++
T Consensus 426 LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~-~~~~~d~i~~l~~G~i 504 (529)
T PRK15134 426 FSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHV-VRALCHQVIVLRQGEV 504 (529)
T ss_pred CCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHH-HHHhcCeEEEEECCEE
Confidence 9999999999999999999999999999999999999999999999865 8999999999754 6788999999999999
Q ss_pred EEecChHHHH
Q 008534 375 LYFGKASEAM 384 (562)
Q Consensus 375 v~~G~~~el~ 384 (562)
++.|+++++.
T Consensus 505 ~~~~~~~~~~ 514 (529)
T PRK15134 505 VEQGDCERVF 514 (529)
T ss_pred EEEcCHHHHh
Confidence 9999998874
|
|
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-41 Score=324.16 Aligned_cols=170 Identities=31% Similarity=0.600 Sum_probs=153.0
Q ss_pred EEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---h
Q 008534 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---S 226 (562)
Q Consensus 150 l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~---~ 226 (562)
++++||+++|. .+++|+|+||++++||+++|+||||||||||+++|+|... +.+|+|.++|.++.. .
T Consensus 1 l~~~~l~~~~~--------~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~ 70 (173)
T cd03230 1 IEVRNLSKRYG--------KKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLK--PDSGEIKVLGKDIKKEPEE 70 (173)
T ss_pred CEEEEEEEEEC--------CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEcccchHh
Confidence 46899999882 3469999999999999999999999999999999999543 568999999998742 4
Q ss_pred ccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHH
Q 008534 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (562)
Q Consensus 227 ~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~I 306 (562)
+++.++|++|++.+|+.+|+.||+. ||||||||++|
T Consensus 71 ~~~~i~~~~q~~~~~~~~tv~~~~~--------------------------------------------LS~G~~qrv~l 106 (173)
T cd03230 71 VKRRIGYLPEEPSLYENLTVRENLK--------------------------------------------LSGGMKQRLAL 106 (173)
T ss_pred hhccEEEEecCCccccCCcHHHHhh--------------------------------------------cCHHHHHHHHH
Confidence 5678999999999998889999873 99999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeE
Q 008534 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374 (562)
Q Consensus 307 AraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~i 374 (562)
||||+.+|++|||||||++||+.++..+.+.|++++++|.|+|++||++. .+...||++++|++|++
T Consensus 107 aral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~-~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 107 AQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILE-EAERLCDRVAILNNGRI 173 (173)
T ss_pred HHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhCCEEEEEeCCCC
Confidence 99999999999999999999999999999999999877899999999975 46678999999999974
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=375.76 Aligned_cols=223 Identities=21% Similarity=0.384 Sum_probs=184.4
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
.|+++||++.|.. .+++.+|+||||+|++||+++|+||||||||||+|+|+|.+ .|+.+|+|.++|+++..
T Consensus 259 ~l~~~~l~~~~~~-----~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~-~~~~~G~i~~~g~~~~~~~~ 332 (506)
T PRK13549 259 ILEVRNLTAWDPV-----NPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAY-PGRWEGEIFIDGKPVKIRNP 332 (506)
T ss_pred eEEEecCcccccc-----ccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCC-CCCCCcEEEECCEECCCCCH
Confidence 6999999998721 12356999999999999999999999999999999999954 33368999999988742
Q ss_pred --hccCcEEEEccCC---CCCCCCCHHHHHHHHHhhCCCC--CccHHHHHHHHHHHHHHcCCC-ccccccccCcccCCCC
Q 008534 226 --SLKSKIGFVTQDD---VLFPHLTVKETLTYAALLRLPN--TLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVS 297 (562)
Q Consensus 226 --~~~~~igyV~Q~~---~l~~~lTV~enl~~~~~~~~~~--~~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~~LS 297 (562)
..++.++||+|++ .+++.+||.||+.++....... ........+++.++++.+++. +..++. +..||
T Consensus 333 ~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LS 407 (506)
T PRK13549 333 QQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELA-----IARLS 407 (506)
T ss_pred HHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccc-----cccCC
Confidence 2356799999995 4788899999998763211100 012333446688999999996 455554 46899
Q ss_pred hhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEe
Q 008534 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (562)
Q Consensus 298 GGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~ 377 (562)
|||||||+|||||+.+|+||||||||+|||+.++..+.+.|++++++|+|||++||++. .+.++||++++|++|+++..
T Consensus 408 gG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~-~~~~~~d~v~~l~~G~i~~~ 486 (506)
T PRK13549 408 GGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELP-EVLGLSDRVLVMHEGKLKGD 486 (506)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEE
Confidence 99999999999999999999999999999999999999999999888999999999975 47789999999999999999
Q ss_pred cChHHH
Q 008534 378 GKASEA 383 (562)
Q Consensus 378 G~~~el 383 (562)
|+++++
T Consensus 487 ~~~~~~ 492 (506)
T PRK13549 487 LINHNL 492 (506)
T ss_pred eccccC
Confidence 987664
|
|
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-41 Score=335.34 Aligned_cols=208 Identities=27% Similarity=0.448 Sum_probs=169.7
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
.|+++|++++|. ...+++|+|+||+|++|++++|+||||||||||+++|+|.. ++.+|+|.++|.++..
T Consensus 2 ~l~~~~l~~~~~------~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~--~~~~G~i~~~g~~~~~~~~ 73 (221)
T cd03244 2 DIEFKNVSLRYR------PNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLV--ELSSGSILIDGVDISKIGL 73 (221)
T ss_pred cEEEEEEEEecC------CCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCC--CCCCCEEEECCEEhHhCCH
Confidence 478999999982 12357999999999999999999999999999999999954 3568999999998742
Q ss_pred -hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccc-------cccccCcccCCCC
Q 008534 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQ-------DTMIGGSFVRGVS 297 (562)
Q Consensus 226 -~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-------~t~vg~~~~~~LS 297 (562)
.+++.++|++|++.+++ .||+||+.+... ... +++.+.++.+++.+.. ++.. +..+..||
T Consensus 74 ~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~------~~~----~~~~~~~~~~~l~~~~~~l~~~l~~~~-~~~~~~LS 141 (221)
T cd03244 74 HDLRSRISIIPQDPVLFS-GTIRSNLDPFGE------YSD----EELWQALERVGLKEFVESLPGGLDTVV-EEGGENLS 141 (221)
T ss_pred HHHhhhEEEECCCCcccc-chHHHHhCcCCC------CCH----HHHHHHHHHhCcHHHHHhccccccccc-ccCCCcCC
Confidence 45678999999999886 599999975321 111 2344455555554332 2222 23567899
Q ss_pred hhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEe
Q 008534 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (562)
Q Consensus 298 GGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~ 377 (562)
||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++.+ +.|||++||++.. + ..||++++|++|++++.
T Consensus 142 ~G~~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~-~-~~~d~i~~l~~g~~~~~ 218 (221)
T cd03244 142 VGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAFK-DCTVLTIAHRLDT-I-IDSDRILVLDKGRVVEF 218 (221)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHHH-H-hhCCEEEEEECCeEEec
Confidence 9999999999999999999999999999999999999999999864 6899999999764 4 45999999999999998
Q ss_pred cC
Q 008534 378 GK 379 (562)
Q Consensus 378 G~ 379 (562)
|+
T Consensus 219 ~~ 220 (221)
T cd03244 219 DS 220 (221)
T ss_pred CC
Confidence 76
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-41 Score=331.99 Aligned_cols=202 Identities=23% Similarity=0.332 Sum_probs=173.0
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh-h
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-S 226 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~-~ 226 (562)
..|+++|++++| .++.+|+++||+|++||+++|+||||||||||+++|+|... +.+|+|.++|+++.. .
T Consensus 10 ~~l~~~~l~~~~--------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~i~~~~ 79 (214)
T PRK13543 10 PLLAAHALAFSR--------NEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLH--VESGQIQIDGKTATRGD 79 (214)
T ss_pred ceEEEeeEEEec--------CCceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCC--CCCeeEEECCEEccchh
Confidence 369999999987 24569999999999999999999999999999999999543 568999999998753 2
Q ss_pred ccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHH
Q 008534 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (562)
Q Consensus 227 ~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~I 306 (562)
.++.++|++|++.+++.+|++||+.+....+. . ..++.+.++++.++|.+..++. +..|||||||||+|
T Consensus 80 ~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~---~---~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~l 148 (214)
T PRK13543 80 RSRFMAYLGHLPGLKADLSTLENLHFLCGLHG---R---RAKQMPGSALAIVGLAGYEDTL-----VRQLSAGQKKRLAL 148 (214)
T ss_pred hhhceEEeecCcccccCCcHHHHHHHHHHhcC---C---cHHHHHHHHHHHcCChhhccCC-----hhhCCHHHHHHHHH
Confidence 34569999999999998999999988654321 1 1234567788999998766654 46899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcC
Q 008534 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK 371 (562)
Q Consensus 307 AraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~ 371 (562)
||+|+.+|++|||||||++||+.++..+.+.|++++++|.|||++||++. .+.++||++++|+.
T Consensus 149 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~~~i~~l~~ 212 (214)
T PRK13543 149 ARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAY-AAPPVRTRMLTLEA 212 (214)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChh-hhhhhcceEEEEee
Confidence 99999999999999999999999999999999999888999999999976 47789999999863
|
|
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-41 Score=329.55 Aligned_cols=195 Identities=27% Similarity=0.446 Sum_probs=168.7
Q ss_pred EEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCC---hh
Q 008534 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---KS 226 (562)
Q Consensus 150 l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~---~~ 226 (562)
|+++||++.| +++.+|+|+||+|++||+++|+|+||||||||+++|+|.. ++.+|+|.++|.++. ..
T Consensus 1 l~i~~l~~~~--------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~--~~~~G~i~~~g~~~~~~~~~ 70 (201)
T cd03231 1 LEADELTCER--------DGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLS--PPLAGRVLLNGGPLDFQRDS 70 (201)
T ss_pred CEEEEEEEEe--------CCceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC--CCCCcEEEECCEecccccHH
Confidence 4689999988 2457999999999999999999999999999999999954 356899999998864 23
Q ss_pred ccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHH
Q 008534 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (562)
Q Consensus 227 ~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~I 306 (562)
+++.++|++|++.+++.+||+||+.+.... ..++++.++++.+++.+..++. +..||||||||++|
T Consensus 71 ~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~---------~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl~l 136 (201)
T cd03231 71 IARGLLYLGHAPGIKTTLSVLENLRFWHAD---------HSDEQVEEALARVGLNGFEDRP-----VAQLSAGQQRRVAL 136 (201)
T ss_pred hhhheEEeccccccCCCcCHHHHHHhhccc---------ccHHHHHHHHHHcCChhhhcCc-----hhhCCHHHHHHHHH
Confidence 567899999999998889999999875311 0234677889999998766554 46899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEE
Q 008534 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL 369 (562)
Q Consensus 307 AraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL 369 (562)
||||+.+|++|||||||+|||+.++..+.+.|+++.++|+|+|++||++.. +...|++++++
T Consensus 137 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~-~~~~~~~~~~~ 198 (201)
T cd03231 137 ARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLG-LSEAGARELDL 198 (201)
T ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchh-hhhccceeEec
Confidence 999999999999999999999999999999999988779999999999764 66789999887
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-41 Score=373.28 Aligned_cols=224 Identities=23% Similarity=0.409 Sum_probs=185.6
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC---CCccEEEECCEeCCh
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP---TVGGSITYNDHPYSK 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~---~~~G~I~i~G~~~~~ 225 (562)
+|+++||++.|.. .+..+++|+||||+|++||+++|+||||||||||+++|+|.+..+ +.+|+|.++|.++..
T Consensus 5 ~l~~~~l~~~~~~----~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~ 80 (529)
T PRK15134 5 LLAIENLSVAFRQ----QQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLH 80 (529)
T ss_pred eEEEeceEEEecC----CCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEeccc
Confidence 6999999999831 011357999999999999999999999999999999999966421 258999999998742
Q ss_pred -------hcc-CcEEEEccCCC--CCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCcc---ccccccCcc
Q 008534 226 -------SLK-SKIGFVTQDDV--LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC---QDTMIGGSF 292 (562)
Q Consensus 226 -------~~~-~~igyV~Q~~~--l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~---~~t~vg~~~ 292 (562)
..+ +.||||+|++. +++.+||++|+.+...... ..+..+..+++.++++.+||.+. .++ .
T Consensus 81 ~~~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~ 153 (529)
T PRK15134 81 ASEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHR--GMRREAARGEILNCLDRVGIRQAAKRLTD-----Y 153 (529)
T ss_pred CCHHHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCChHHHHhh-----C
Confidence 122 57999999975 6677899999986543211 23344556778899999999752 243 4
Q ss_pred cCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcC
Q 008534 293 VRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGK 371 (562)
Q Consensus 293 ~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~ 371 (562)
+.+|||||||||+|||||+.+|++|||||||++||+.++..+++.|++++++ |+|||++||++.. +..+||+|++|++
T Consensus 154 ~~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~-~~~~~dri~~l~~ 232 (529)
T PRK15134 154 PHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSI-VRKLADRVAVMQN 232 (529)
T ss_pred CcccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHH-HHHhcCEEEEEEC
Confidence 5789999999999999999999999999999999999999999999999765 8999999999764 6678999999999
Q ss_pred CeEEEecChHHHH
Q 008534 372 GSLLYFGKASEAM 384 (562)
Q Consensus 372 G~iv~~G~~~el~ 384 (562)
|++++.|+++++.
T Consensus 233 G~i~~~g~~~~~~ 245 (529)
T PRK15134 233 GRCVEQNRAATLF 245 (529)
T ss_pred CEEEEeCCHHHHh
Confidence 9999999988764
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-41 Score=372.75 Aligned_cols=223 Identities=26% Similarity=0.438 Sum_probs=184.4
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEEC-CEe---C
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYN-DHP---Y 223 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~-G~~---~ 223 (562)
.+|+++||+++|... ..+.+.+|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++ |.+ +
T Consensus 278 ~~l~~~~l~~~~~~~---~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~--p~~G~i~~~~g~~~~~~ 352 (520)
T TIGR03269 278 PIIKVRNVSKRYISV---DRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLE--PTSGEVNVRVGDEWVDM 352 (520)
T ss_pred ceEEEeccEEEeccC---CCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEEecCCccccc
Confidence 369999999998310 0123579999999999999999999999999999999999653 568999996 532 2
Q ss_pred C-------hhccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCc-----cccccccCc
Q 008534 224 S-------KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-----CQDTMIGGS 291 (562)
Q Consensus 224 ~-------~~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-----~~~t~vg~~ 291 (562)
. ...++.|+||+|++.+++.+||+||+.+..... ......++++.++++.++|.+ ..++
T Consensus 353 ~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~----~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~----- 423 (520)
T TIGR03269 353 TKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLE----LPDELARMKAVITLKMVGFDEEKAEEILDK----- 423 (520)
T ss_pred cccchhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcC----CCHHHHHHHHHHHHHhCCCCCccchhhhhC-----
Confidence 1 123567999999999999999999998764321 123334456888999999964 2343
Q ss_pred ccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEc
Q 008534 292 FVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLG 370 (562)
Q Consensus 292 ~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~ 370 (562)
++.+|||||||||+|||||+.+|+||||||||+|||+.++..+++.|++++++ |.|||++||++. .+.++||+|++|+
T Consensus 424 ~~~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~d~i~~l~ 502 (520)
T TIGR03269 424 YPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMD-FVLDVCDRAALMR 502 (520)
T ss_pred ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHhCCEEEEEE
Confidence 45789999999999999999999999999999999999999999999999764 899999999976 4778999999999
Q ss_pred CCeEEEecChHHHHH
Q 008534 371 KGSLLYFGKASEAMA 385 (562)
Q Consensus 371 ~G~iv~~G~~~el~~ 385 (562)
+|++++.|+++++.+
T Consensus 503 ~G~i~~~g~~~~~~~ 517 (520)
T TIGR03269 503 DGKIVKIGDPEEIVE 517 (520)
T ss_pred CCEEEEECCHHHHHh
Confidence 999999999988754
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-41 Score=409.58 Aligned_cols=224 Identities=26% Similarity=0.395 Sum_probs=197.2
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh--
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~-- 225 (562)
..|+++||++.|. +..+.+|+||||+|++||+++|+||||||||||+|+|+|.+. +++|+|.++|+++..
T Consensus 1936 ~~L~v~nLsK~Y~------~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~--ptsG~I~i~G~~i~~~~ 2007 (2272)
T TIGR01257 1936 DILRLNELTKVYS------GTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTT--VTSGDATVAGKSILTNI 2007 (2272)
T ss_pred ceEEEEEEEEEEC------CCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCC--CCccEEEECCEECcchH
Confidence 3699999999982 123579999999999999999999999999999999999653 568999999998852
Q ss_pred -hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHH
Q 008534 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (562)
Q Consensus 226 -~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 304 (562)
..++.|||+||++.+++.+||+|||.+.+..+ +.+.++.++.++++++.++|.+..|+. +++|||||||||
T Consensus 2008 ~~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~---g~~~~~~~~~v~~lLe~lgL~~~~dk~-----~~~LSGGqKqRL 2079 (2272)
T TIGR01257 2008 SDVHQNMGYCPQFDAIDDLLTGREHLYLYARLR---GVPAEEIEKVANWSIQSLGLSLYADRL-----AGTYSGGNKRKL 2079 (2272)
T ss_pred HHHhhhEEEEeccccCCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHHHhcCC-----hhhCCHHHHHHH
Confidence 34677999999999999999999999876554 233444556788899999998877765 468999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHH
Q 008534 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (562)
Q Consensus 305 ~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~ 384 (562)
+||+||+.+|+||||||||+|||+.+++.+++.|++++++|+|||++||+++ ++..+||||++|++|++++.|+++++.
T Consensus 2080 slA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~me-e~e~lcDrV~IL~~G~i~~~Gs~q~Lk 2158 (2272)
T TIGR01257 2080 STAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSME-ECEALCTRLAIMVKGAFQCLGTIQHLK 2158 (2272)
T ss_pred HHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 9999999999999999999999999999999999999877999999999975 578899999999999999999999998
Q ss_pred HHHH
Q 008534 385 AYFS 388 (562)
Q Consensus 385 ~~f~ 388 (562)
..|.
T Consensus 2159 ~~~g 2162 (2272)
T TIGR01257 2159 SKFG 2162 (2272)
T ss_pred HHhC
Confidence 8775
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-42 Score=420.33 Aligned_cols=214 Identities=21% Similarity=0.369 Sum_probs=183.2
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCC---
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS--- 224 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~--- 224 (562)
..|+|+||+|+|. ...+++|+||||+|+|||.+||+|+||||||||+++|.|. ++ .+|+|++||.++.
T Consensus 1216 g~I~f~nVs~~Y~------~~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl-~~--~~G~I~IdG~di~~i~ 1286 (1490)
T TIGR01271 1216 GQMDVQGLTAKYT------EAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRL-LS--TEGEIQIDGVSWNSVT 1286 (1490)
T ss_pred CeEEEEEEEEEeC------CCCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhh-cC--CCcEEEECCEEcccCC
Confidence 4699999999993 2346899999999999999999999999999999999975 43 4899999999986
Q ss_pred -hhccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCC-------CccccccccCcccCCC
Q 008534 225 -KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL-------ERCQDTMIGGSFVRGV 296 (562)
Q Consensus 225 -~~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~t~vg~~~~~~L 296 (562)
+.+|++|+||||+|.+|+. ||+|||.... ..+ ++.+.++++..+| ++..||.+++. ...|
T Consensus 1287 ~~~lR~~is~IpQdp~LF~G-TIR~NLdp~~------~~t----deei~~aL~~~~L~~~i~~lp~GLdt~v~e~-G~nL 1354 (1490)
T TIGR01271 1287 LQTWRKAFGVIPQKVFIFSG-TFRKNLDPYE------QWS----DEEIWKVAEEVGLKSVIEQFPDKLDFVLVDG-GYVL 1354 (1490)
T ss_pred HHHHHhceEEEeCCCccCcc-CHHHHhCccc------CCC----HHHHHHHHHHCCCHHHHHhCccccccccccC-CCcC
Confidence 3578999999999999985 9999996421 122 2345556665554 46778888764 4569
Q ss_pred ChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEE
Q 008534 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (562)
Q Consensus 297 SGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~ 376 (562)
|||||||++|||||+++|+|||||||||+||+.+...|.+.|++.. +++|||+|+|+++. ...||+|++|++|+|++
T Consensus 1355 SgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~-~~~TvI~IaHRl~t--i~~~DrIlvL~~G~ivE 1431 (1490)
T TIGR01271 1355 SNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSF-SNCTVILSEHRVEA--LLECQQFLVIEGSSVKQ 1431 (1490)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH--HHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999875 47999999999864 45699999999999999
Q ss_pred ecChHHHHH
Q 008534 377 FGKASEAMA 385 (562)
Q Consensus 377 ~G~~~el~~ 385 (562)
.|+|+++++
T Consensus 1432 ~g~p~~Ll~ 1440 (1490)
T TIGR01271 1432 YDSIQKLLN 1440 (1490)
T ss_pred eCCHHHHHc
Confidence 999999874
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-41 Score=339.43 Aligned_cols=202 Identities=25% Similarity=0.450 Sum_probs=172.1
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhcc
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~ 228 (562)
.|+++||++.| .++.+|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++| +
T Consensus 4 ~l~~~~l~~~~--------~~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~--p~~G~i~~~~-------~ 66 (251)
T PRK09544 4 LVSLENVSVSF--------GQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVA--PDEGVIKRNG-------K 66 (251)
T ss_pred EEEEeceEEEE--------CCceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECC-------c
Confidence 68999999998 24579999999999999999999999999999999999653 5689999987 2
Q ss_pred CcEEEEccCCCCCCC--CCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHH
Q 008534 229 SKIGFVTQDDVLFPH--LTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (562)
Q Consensus 229 ~~igyV~Q~~~l~~~--lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~I 306 (562)
..++|++|++.+++. .|+.+++.+.. ... .+++.++++.++|.+..++. +..|||||||||+|
T Consensus 67 ~~i~~v~q~~~~~~~l~~~~~~~~~~~~------~~~----~~~~~~~l~~~gl~~~~~~~-----~~~LSgGq~qrv~l 131 (251)
T PRK09544 67 LRIGYVPQKLYLDTTLPLTVNRFLRLRP------GTK----KEDILPALKRVQAGHLIDAP-----MQKLSGGETQRVLL 131 (251)
T ss_pred cCEEEeccccccccccChhHHHHHhccc------ccc----HHHHHHHHHHcCChHHHhCC-----hhhCCHHHHHHHHH
Confidence 469999999888765 37888775421 111 23467889999998766654 46899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHH
Q 008534 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (562)
Q Consensus 307 AraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~ 384 (562)
||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. .+...||+|++|++ ++++.|+++++.
T Consensus 132 aral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~-~i~~~~d~i~~l~~-~i~~~g~~~~~~ 208 (251)
T PRK09544 132 ARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLH-LVMAKTDEVLCLNH-HICCSGTPEVVS 208 (251)
T ss_pred HHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEECC-ceEeeCCHHHHh
Confidence 99999999999999999999999999999999999765 899999999976 46788999999964 799999988763
|
|
| >cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-41 Score=332.43 Aligned_cols=202 Identities=26% Similarity=0.357 Sum_probs=167.4
Q ss_pred EEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhccC
Q 008534 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKS 229 (562)
Q Consensus 150 l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~~ 229 (562)
+.++|++++| +++++|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.++..
T Consensus 23 l~~~~~~~~~--------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~---- 88 (224)
T cd03220 23 LGILGRKGEV--------GEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYP--PDSGTVTVRGRVSSL---- 88 (224)
T ss_pred hhhhhhhhhc--------CCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEchh----
Confidence 5566777666 35679999999999999999999999999999999999543 568999999987531
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHH
Q 008534 230 KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNE 309 (562)
Q Consensus 230 ~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAra 309 (562)
..+...+++.+||+||+.++.... ........+++.++++.++|.+..++. +.+||||||||++||||
T Consensus 89 ----~~~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrv~lara 156 (224)
T cd03220 89 ----LGLGGGFNPELTGRENIYLNGRLL---GLSRKEIDEKIDEIIEFSELGDFIDLP-----VKTYSSGMKARLAFAIA 156 (224)
T ss_pred ----hcccccCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCC-----hhhCCHHHHHHHHHHHH
Confidence 111234456789999999875432 122334455678889999998777664 46899999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEec
Q 008534 310 IIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (562)
Q Consensus 310 Ll~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G 378 (562)
|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. ++..+||++++|++|++++.|
T Consensus 157 l~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 157 TALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPS-SIKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999999999999999877899999999975 466789999999999998865
|
Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2. |
| >COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-41 Score=312.33 Aligned_cols=216 Identities=31% Similarity=0.518 Sum_probs=189.1
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeC--C--
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPY--S-- 224 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~--~-- 224 (562)
.|+++|+++.| +...+|.||+++.+.||.+.++||||||||||++.|. .+. -+.+|+..+.|... +
T Consensus 2 sirv~~in~~y--------g~~q~lfdi~l~~~~getlvllgpsgagkssllr~ln-lle-~p~sg~l~ia~~~fd~s~~ 71 (242)
T COG4161 2 SIQLNGINCFY--------GAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLN-LLE-MPRSGTLNIAGNHFDFSKT 71 (242)
T ss_pred ceEEccccccc--------ccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHH-HHh-CCCCCeEEecccccccccC
Confidence 47899999988 3567999999999999999999999999999999998 454 35589999987643 2
Q ss_pred ------hhccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCCh
Q 008534 225 ------KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSG 298 (562)
Q Consensus 225 ------~~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSG 298 (562)
..+|+.+|+|||...++|++||.|||.-+.. +. .++++++...++.++++++.|.+.+|. ++-.|||
T Consensus 72 ~~~k~i~~lr~~vgmvfqqy~lwphltv~enlieap~-kv-~gl~~~qa~~~a~ellkrlrl~~~adr-----~plhlsg 144 (242)
T COG4161 72 PSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPC-RV-LGLSKDQALARAEKLLKRLRLKPYADR-----YPLHLSG 144 (242)
T ss_pred ccHHHHHHHHHhhhhhhhhhccCchhHHHHHHHhhhH-HH-hCCCHHHHHHHHHHHHHHhcccccccc-----Cceeccc
Confidence 1478899999999999999999999976532 21 246778888899999999999988876 4567999
Q ss_pred hHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEec
Q 008534 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (562)
Q Consensus 299 GqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G 378 (562)
||+|||+|||||+.+|++|++||||++|||+-..++++++++++..|.|-+++||.... ..+.+.+|+.|++|+||+.|
T Consensus 145 gqqqrvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~v-a~k~as~vvyme~g~ive~g 223 (242)
T COG4161 145 GQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEV-ARKTASRVVYMENGHIVEQG 223 (242)
T ss_pred chhhhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhH-HHhhhhheEeeecCeeEeec
Confidence 99999999999999999999999999999999999999999999999999999999653 56789999999999999999
Q ss_pred ChHH
Q 008534 379 KASE 382 (562)
Q Consensus 379 ~~~e 382 (562)
+++.
T Consensus 224 ~a~~ 227 (242)
T COG4161 224 DASC 227 (242)
T ss_pred chhh
Confidence 8754
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-41 Score=360.47 Aligned_cols=216 Identities=26% Similarity=0.442 Sum_probs=191.9
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCC---
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS--- 224 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~--- 224 (562)
+.++++||+++| +..++|+||||++.+||++||+|.||||||||+|+|+|. +. +++|+|++||++..
T Consensus 7 ~ll~~~~i~K~F--------ggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv-~~-p~~G~I~~~G~~~~~~s 76 (500)
T COG1129 7 PLLELRGISKSF--------GGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGV-YP-PDSGEILIDGKPVAFSS 76 (500)
T ss_pred ceeeeecceEEc--------CCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCc-cc-CCCceEEECCEEccCCC
Confidence 369999999998 467899999999999999999999999999999999995 43 56899999999875
Q ss_pred --hhccCcEEEEccCCCCCCCCCHHHHHHHHHhhCC-CCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHH
Q 008534 225 --KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRL-PNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGER 301 (562)
Q Consensus 225 --~~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~-~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqr 301 (562)
+....-|+.|+|+..|+|+|||.|||.++..... ..-+.+....+++.++|+.+++....++.+ .+||+|||
T Consensus 77 p~~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v-----~~Lsiaqr 151 (500)
T COG1129 77 PRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLV-----GDLSIAQR 151 (500)
T ss_pred HHHHHhCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhh-----hhCCHHHH
Confidence 2345679999999999999999999998865433 123567778888999999999864466655 58999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecC
Q 008534 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (562)
Q Consensus 302 qRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (562)
|-|.|||||..+++|||||||||+|+......+++.+++++++|.+||+|||++. +++++||||.||.+|+.+..++
T Consensus 152 Q~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~-Ei~~i~DritVlRDG~~v~~~~ 228 (500)
T COG1129 152 QMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLD-EVFEIADRITVLRDGRVVGTRP 228 (500)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHH-HHHHhcCEEEEEeCCEEeeecc
Confidence 9999999999999999999999999999999999999999999999999999975 6999999999999999998887
|
|
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-41 Score=336.64 Aligned_cols=211 Identities=32% Similarity=0.521 Sum_probs=168.9
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh--
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~-- 225 (562)
.+++++|+++.|.. ...+.+|+|+||+|++|++++|+||||||||||+++|+|.+ ++.+|+|.++|.++..
T Consensus 10 ~~l~~~~l~~~~~~-----~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~--~~~~G~i~~~g~~~~~~~ 82 (226)
T cd03248 10 GIVKFQNVTFAYPT-----RPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFY--QPQGGQVLLDGKPISQYE 82 (226)
T ss_pred ceEEEEEEEEEeCC-----CCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCc--CCCCcEEEECCCchHHcC
Confidence 47999999999831 11246999999999999999999999999999999999964 3568999999987642
Q ss_pred --hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHc--CCCccccccccCcccCCCChhHH
Q 008534 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINEL--GLERCQDTMIGGSFVRGVSGGER 301 (562)
Q Consensus 226 --~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~l--gL~~~~~t~vg~~~~~~LSGGqr 301 (562)
..++.++|++|++.+|+ .||+||+.++..........+......+.++++.+ |+.+..+. .+..||||||
T Consensus 83 ~~~~~~~i~~~~q~~~l~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~-----~~~~LSgG~~ 156 (226)
T cd03248 83 HKYLHSKVSLVGQEPVLFA-RSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGE-----KGSQLSGGQK 156 (226)
T ss_pred HHHHHhhEEEEecccHHHh-hhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhc-----CCCcCCHHHH
Confidence 34567999999999887 59999998754211000000111122356778877 66544443 3578999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeE
Q 008534 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374 (562)
Q Consensus 302 qRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~i 374 (562)
|||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++.. + ..||+|++|++|++
T Consensus 157 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~-~-~~~d~i~~l~~g~i 226 (226)
T cd03248 157 QRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPE-RRTVLVIAHRLST-V-ERADQILVLDGGRI 226 (226)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC-CCEEEEEECCHHH-H-HhCCEEEEecCCcC
Confidence 999999999999999999999999999999999999999865 6899999999764 5 45999999999974
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-41 Score=322.86 Aligned_cols=171 Identities=36% Similarity=0.631 Sum_probs=152.9
Q ss_pred EEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh----
Q 008534 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (562)
Q Consensus 150 l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~---- 225 (562)
|+++|++++| .++++|+|+||++++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++..
T Consensus 1 i~~~~l~~~~--------~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~ 70 (178)
T cd03229 1 LELKNVSKRY--------GQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEE--PDSGSILIDGEDLTDLEDE 70 (178)
T ss_pred CEEEEEEEEE--------CCeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEccccchh
Confidence 4689999988 23579999999999999999999999999999999999543 568999999988642
Q ss_pred --hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHH
Q 008534 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (562)
Q Consensus 226 --~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqR 303 (562)
..++.++|++|++.+++.+|++||+.+. ||||||||
T Consensus 71 ~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~------------------------------------------lS~G~~qr 108 (178)
T cd03229 71 LPPLRRRIGMVFQDFALFPHLTVLENIALG------------------------------------------LSGGQQQR 108 (178)
T ss_pred HHHHhhcEEEEecCCccCCCCCHHHheeec------------------------------------------CCHHHHHH
Confidence 3457899999999999889999998642 99999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCe
Q 008534 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGS 373 (562)
Q Consensus 304 v~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~ 373 (562)
++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|+|++||++. .+...||++++|++|+
T Consensus 109 ~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 109 VALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLD-EAARLADRVVVLRDGK 178 (178)
T ss_pred HHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEeCCC
Confidence 99999999999999999999999999999999999999876 899999999975 4666899999999885
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13546 teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-40 Score=335.55 Aligned_cols=219 Identities=22% Similarity=0.303 Sum_probs=182.3
Q ss_pred eeEEEEeEEEEEeecc------------cCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccE
Q 008534 148 IYLKFTDVTYKVILKG------------MTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGS 215 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~------------~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~ 215 (562)
+.++++||++.|.... +.....+++|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~--p~~G~ 80 (264)
T PRK13546 3 VSVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLS--PTVGK 80 (264)
T ss_pred ceEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCceE
Confidence 4689999998886521 001134579999999999999999999999999999999999653 56899
Q ss_pred EEECCEeCChhccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCC
Q 008534 216 ITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRG 295 (562)
Q Consensus 216 I~i~G~~~~~~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~ 295 (562)
|.++|. +++++|++.+++.+|+.||+.+..... ....+.....+.++++.++|.+..+.. +..
T Consensus 81 I~~~g~---------~~~~~~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~ 143 (264)
T PRK13546 81 VDRNGE---------VSVIAISAGLSGQLTGIENIEFKMLCM---GFKRKEIKAMTPKIIEFSELGEFIYQP-----VKK 143 (264)
T ss_pred EEECCE---------EeEEecccCCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCC-----ccc
Confidence 999985 467788887888899999998765332 123344445567788888887766653 468
Q ss_pred CChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEE
Q 008534 296 VSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLL 375 (562)
Q Consensus 296 LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv 375 (562)
|||||||||+|||||+.+|+||||||||+|||+.++..+++.|.++++.|+|||++||++. .+...||+|++|++|+++
T Consensus 144 LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~-~i~~~~d~i~~l~~G~i~ 222 (264)
T PRK13546 144 YSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLG-QVRQFCTKIAWIEGGKLK 222 (264)
T ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHHcCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999999999999877999999999965 467789999999999999
Q ss_pred EecChHHHHHH
Q 008534 376 YFGKASEAMAY 386 (562)
Q Consensus 376 ~~G~~~el~~~ 386 (562)
+.|+++++.+.
T Consensus 223 ~~g~~~~~~~~ 233 (264)
T PRK13546 223 DYGELDDVLPK 233 (264)
T ss_pred EeCCHHHHHHH
Confidence 99999887653
|
|
| >TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-41 Score=324.72 Aligned_cols=194 Identities=25% Similarity=0.393 Sum_probs=164.9
Q ss_pred EEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---h
Q 008534 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---S 226 (562)
Q Consensus 150 l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~---~ 226 (562)
++++|+++.| +.+.+|+|+||+|++||+++|+||||||||||+++|+|.. ++.+|+|.++|.++.. .
T Consensus 1 l~~~~l~~~~--------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~--~~~~G~i~~~g~~~~~~~~~ 70 (198)
T TIGR01189 1 LAARNLACSR--------GERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLL--RPDSGEVRWNGTALAEQRDE 70 (198)
T ss_pred CEEEEEEEEE--------CCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC--CCCccEEEECCEEcccchHH
Confidence 4689999988 2457999999999999999999999999999999999954 3568999999998642 3
Q ss_pred ccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHH
Q 008534 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (562)
Q Consensus 227 ~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~I 306 (562)
+++.++|++|++.+++.+||.||+.+...... . .++++.++++.++|.+..++. +..|||||||||+|
T Consensus 71 ~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~-----~--~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~l 138 (198)
T TIGR01189 71 PHRNILYLGHLPGLKPELSALENLHFWAAIHG-----G--AQRTIEDALAAVGLTGFEDLP-----AAQLSAGQQRRLAL 138 (198)
T ss_pred hhhheEEeccCcccccCCcHHHHHHHHHHHcC-----C--cHHHHHHHHHHcCCHHHhcCC-----hhhcCHHHHHHHHH
Confidence 45679999999999988999999988653321 1 123577889999998766654 46899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEE
Q 008534 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLIL 368 (562)
Q Consensus 307 AraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~v 368 (562)
||||+.+|++|||||||+|||+.++..+.+.|++++++|.|||++||++.. -.|++++.
T Consensus 139 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~---~~~~~~~~ 197 (198)
T TIGR01189 139 ARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLG---LVEARELR 197 (198)
T ss_pred HHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEccccc---ccceEEee
Confidence 999999999999999999999999999999999997779999999999754 35777764
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. |
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-41 Score=321.18 Aligned_cols=175 Identities=33% Similarity=0.605 Sum_probs=153.9
Q ss_pred EEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---h
Q 008534 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---S 226 (562)
Q Consensus 150 l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~---~ 226 (562)
|+++|++++|. ...+++|+|+||+|++||+++|+||||||||||+++|+|.. ++.+|+|.++|.++.. .
T Consensus 1 i~~~~~~~~~~------~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~--~~~~G~i~~~g~~~~~~~~~ 72 (178)
T cd03247 1 LSINNVSFSYP------EQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDL--KPQQGEITLDGVPVSDLEKA 72 (178)
T ss_pred CEEEEEEEEeC------CCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccC--CCCCCEEEECCEEHHHHHHH
Confidence 47899999882 11246999999999999999999999999999999999954 3568999999997642 3
Q ss_pred ccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHH
Q 008534 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (562)
Q Consensus 227 ~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~I 306 (562)
+++.++|++|++.+++ .|++||+ +..||||||||++|
T Consensus 73 ~~~~i~~~~q~~~~~~-~tv~~~i------------------------------------------~~~LS~G~~qrv~l 109 (178)
T cd03247 73 LSSLISVLNQRPYLFD-TTLRNNL------------------------------------------GRRFSGGERQRLAL 109 (178)
T ss_pred HHhhEEEEccCCeeec-ccHHHhh------------------------------------------cccCCHHHHHHHHH
Confidence 4677999999998886 6999987 24799999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEec
Q 008534 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (562)
Q Consensus 307 AraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G 378 (562)
||||+.+|++|||||||+|||+.++..+++.|+++. ++.|||++||++.. + ..||++++|++|++++.|
T Consensus 110 aral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~-~-~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 110 ARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVL-KDKTLIWITHHLTG-I-EHMDKILFLENGKIIMQG 178 (178)
T ss_pred HHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH-H-HhCCEEEEEECCEEEecC
Confidence 999999999999999999999999999999999986 48999999999764 4 569999999999998765
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-41 Score=338.80 Aligned_cols=217 Identities=23% Similarity=0.362 Sum_probs=172.2
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh--
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~-- 225 (562)
..|+++|++++|. ...+.+|+|+||+|++||+++|+|+||||||||+++|+|.+. +.+|+|.++|.++..
T Consensus 18 ~~i~~~~l~~~~~------~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~i~g~~i~~~~ 89 (257)
T cd03288 18 GEIKIHDLCVRYE------NNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVD--IFDGKIVIDGIDISKLP 89 (257)
T ss_pred ceEEEEEEEEEeC------CCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccC--CCCCeEEECCEEhhhCC
Confidence 3699999999982 123579999999999999999999999999999999999643 568999999998743
Q ss_pred --hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHH-----HHHHHHHHHHcCCCccccccccCcccCCCCh
Q 008534 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQK-----EKRAIDVINELGLERCQDTMIGGSFVRGVSG 298 (562)
Q Consensus 226 --~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~-----~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSG 298 (562)
.+++.|+||+|++.+|+ .|++||+.... ....... ...+.+.++.+ +...++.++ ..+..|||
T Consensus 90 ~~~~~~~i~~v~q~~~l~~-~tv~~nl~~~~------~~~~~~~~~~l~~~~l~~~~~~~--~~~l~~~~~-~~~~~LS~ 159 (257)
T cd03288 90 LHTLRSRLSIILQDPILFS-GSIRFNLDPEC------KCTDDRLWEALEIAQLKNMVKSL--PGGLDAVVT-EGGENFSV 159 (257)
T ss_pred HHHHhhhEEEECCCCcccc-cHHHHhcCcCC------CCCHHHHHHHHHHhCcHHHHhhc--ccccCcEec-cCCCcCCH
Confidence 35678999999999887 59999986421 0111110 11123333333 112233332 34578999
Q ss_pred hHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEec
Q 008534 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (562)
Q Consensus 299 GqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G 378 (562)
|||||++|||||+.+|++|||||||+|||+.++..+.+.|+++. ++.|||++||++.. +. .||+|++|++|++++.|
T Consensus 160 G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~-~~~tiii~sh~~~~-~~-~~dri~~l~~G~i~~~g 236 (257)
T cd03288 160 GQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAF-ADRTVVTIAHRVST-IL-DADLVLVLSRGILVECD 236 (257)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhc-CCCEEEEEecChHH-HH-hCCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999999999999999875 48999999999875 44 49999999999999999
Q ss_pred ChHHHHH
Q 008534 379 KASEAMA 385 (562)
Q Consensus 379 ~~~el~~ 385 (562)
+++++.+
T Consensus 237 ~~~~~~~ 243 (257)
T cd03288 237 TPENLLA 243 (257)
T ss_pred CHHHHHh
Confidence 9988754
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >PRK13540 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-41 Score=325.22 Aligned_cols=194 Identities=26% Similarity=0.388 Sum_probs=165.3
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
+|+++||+++| .++++|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|+++|.++..
T Consensus 1 ml~~~~l~~~~--------~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~v~~~g~~~~~~~~ 70 (200)
T PRK13540 1 MLDVIELDFDY--------HDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLN--PEKGEILFERQSIKKDLC 70 (200)
T ss_pred CEEEEEEEEEe--------CCeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeeEEECCCccccCHH
Confidence 37899999998 24579999999999999999999999999999999999543 568999999998752
Q ss_pred hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHH
Q 008534 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC 305 (562)
Q Consensus 226 ~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ 305 (562)
.++++++|++|++.+++.+||+||+.+..... . .+.++.++++.+++.+..+.. +..||||||||++
T Consensus 71 ~~~~~i~~~~q~~~~~~~~tv~~~~~~~~~~~------~--~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~~rv~ 137 (200)
T PRK13540 71 TYQKQLCFVGHRSGINPYLTLRENCLYDIHFS------P--GAVGITELCRLFSLEHLIDYP-----CGLLSSGQKRQVA 137 (200)
T ss_pred HHHhheEEeccccccCcCCCHHHHHHHHHhcC------c--chHHHHHHHHHcCCchhhhCC-----hhhcCHHHHHHHH
Confidence 35678999999999988899999999864211 1 123678899999997655543 4589999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEE
Q 008534 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLI 367 (562)
Q Consensus 306 IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~ 367 (562)
|||||+.+|++|||||||+|||+.++..+.+.|+++++.|.|||++||++.. ...||..+
T Consensus 138 laral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~--~~~~d~~~ 197 (200)
T PRK13540 138 LLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLP--LNKADYEE 197 (200)
T ss_pred HHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchh--ccccchhh
Confidence 9999999999999999999999999999999999987779999999999753 46677654
|
|
| >TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=329.15 Aligned_cols=209 Identities=25% Similarity=0.406 Sum_probs=168.7
Q ss_pred EEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEEC--CE--eCCh
Q 008534 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYN--DH--PYSK 225 (562)
Q Consensus 150 l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~--G~--~~~~ 225 (562)
|+++||++.|..+. ..+..+.+|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++ |. ++..
T Consensus 2 l~~~~l~~~~~~~~-~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~~~g~~~~~~~ 78 (224)
T TIGR02324 2 LEVEDLSKTFTLHQ-QGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYL--PDSGRILVRHEGAWVDLAQ 78 (224)
T ss_pred EEEEeeEEEeeccc-CCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEEEecCCCccchhh
Confidence 78999999983210 00012479999999999999999999999999999999999543 458999998 43 4321
Q ss_pred -------hc-cCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCcc-ccccccCcccCCC
Q 008534 226 -------SL-KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC-QDTMIGGSFVRGV 296 (562)
Q Consensus 226 -------~~-~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~t~vg~~~~~~L 296 (562)
.. ++.++||+|++.+++.+||+||+.+..... ........+++.++++.++|.+. .+. .+.+|
T Consensus 79 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~~L 150 (224)
T TIGR02324 79 ASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLER---GVPREAARARARELLARLNIPERLWHL-----PPATF 150 (224)
T ss_pred cCHHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhhC-----CcccC
Confidence 12 356999999999999999999998864322 12333445577889999999753 233 35789
Q ss_pred ChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEc
Q 008534 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG 370 (562)
Q Consensus 297 SGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~ 370 (562)
|||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+..+||+++.+.
T Consensus 151 S~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~-~~~~~~d~i~~~~ 223 (224)
T TIGR02324 151 SGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEE-VRELVADRVMDVT 223 (224)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcceeEecC
Confidence 999999999999999999999999999999999999999999999877999999999954 4557899998863
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. |
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-41 Score=319.33 Aligned_cols=169 Identities=34% Similarity=0.616 Sum_probs=150.4
Q ss_pred EEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh----
Q 008534 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (562)
Q Consensus 150 l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~---- 225 (562)
++++|++++|. ...+.+++|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.++..
T Consensus 1 i~~~~l~~~~~------~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~ 72 (173)
T cd03246 1 LEVENVSFRYP------GAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLR--PTSGRVRLDGADISQWDPN 72 (173)
T ss_pred CEEEEEEEEcC------CCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccC--CCCCeEEECCEEcccCCHH
Confidence 46899999872 123569999999999999999999999999999999999543 568999999998742
Q ss_pred hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHH
Q 008534 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC 305 (562)
Q Consensus 226 ~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ 305 (562)
.+++.++|++|++.+|+ .||+||+ ||||||||++
T Consensus 73 ~~~~~i~~~~q~~~~~~-~tv~~~l---------------------------------------------LS~G~~qrv~ 106 (173)
T cd03246 73 ELGDHVGYLPQDDELFS-GSIAENI---------------------------------------------LSGGQRQRLG 106 (173)
T ss_pred HHHhheEEECCCCcccc-CcHHHHC---------------------------------------------cCHHHHHHHH
Confidence 34678999999998887 4999987 9999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeE
Q 008534 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374 (562)
Q Consensus 306 IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~i 374 (562)
|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+ ..||++++|++|++
T Consensus 107 la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~-~~~d~v~~l~~G~i 173 (173)
T cd03246 107 LARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPE-TL-ASADRILVLEDGRV 173 (173)
T ss_pred HHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HH-HhCCEEEEEECCCC
Confidence 999999999999999999999999999999999999877999999999975 34 68999999999974
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-41 Score=370.32 Aligned_cols=215 Identities=23% Similarity=0.423 Sum_probs=179.5
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh--
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~-- 225 (562)
..|+++|+++.| . .+|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|+++..
T Consensus 264 ~~l~~~~l~~~~---------~-~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~--p~~G~I~~~g~~~~~~~ 331 (510)
T PRK09700 264 TVFEVRNVTSRD---------R-KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDK--RAGGEIRLNGKDISPRS 331 (510)
T ss_pred cEEEEeCccccC---------C-CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCc--CCCCeEEECCEECCCCC
Confidence 369999999754 1 38999999999999999999999999999999999653 468999999988742
Q ss_pred ---hccCcEEEEccC---CCCCCCCCHHHHHHHHHhhC---CCC--C-ccHHHHHHHHHHHHHHcCCC-ccccccccCcc
Q 008534 226 ---SLKSKIGFVTQD---DVLFPHLTVKETLTYAALLR---LPN--T-LTKQQKEKRAIDVINELGLE-RCQDTMIGGSF 292 (562)
Q Consensus 226 ---~~~~~igyV~Q~---~~l~~~lTV~enl~~~~~~~---~~~--~-~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~ 292 (562)
..++.||||+|+ +.+++.+||+||+.++...+ ... . .......+++.++++.++|. +..++.
T Consensus 332 ~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~----- 406 (510)
T PRK09700 332 PLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQN----- 406 (510)
T ss_pred HHHHHHCCcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCc-----
Confidence 235679999998 46888999999998753211 000 0 11223345678899999996 556654
Q ss_pred cCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCC
Q 008534 293 VRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKG 372 (562)
Q Consensus 293 ~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G 372 (562)
+.+|||||||||+|||||+.+|+||||||||+|||+.++..+++.|++++++|.|||++||++. .+..+||++++|++|
T Consensus 407 ~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~-~~~~~~d~i~~l~~G 485 (510)
T PRK09700 407 ITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELP-EIITVCDRIAVFCEG 485 (510)
T ss_pred cccCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHhhCCEEEEEECC
Confidence 4689999999999999999999999999999999999999999999999877999999999975 477899999999999
Q ss_pred eEEEecCh
Q 008534 373 SLLYFGKA 380 (562)
Q Consensus 373 ~iv~~G~~ 380 (562)
++++.++.
T Consensus 486 ~i~~~~~~ 493 (510)
T PRK09700 486 RLTQILTN 493 (510)
T ss_pred EEEEEecC
Confidence 99988865
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=403.84 Aligned_cols=223 Identities=21% Similarity=0.374 Sum_probs=195.7
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh--
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~-- 225 (562)
..|+++||++.|. ++++.+|+|+||++++||+++|+||||||||||+++|+|.+. +++|+|.++|.++..
T Consensus 927 ~~L~I~nLsK~y~------~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~--PtsG~I~i~G~dI~~~~ 998 (2272)
T TIGR01257 927 PGVCVKNLVKIFE------PSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLP--PTSGTVLVGGKDIETNL 998 (2272)
T ss_pred ceEEEEeEEEEec------CCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCC--CCceEEEECCEECcchH
Confidence 4799999999982 124679999999999999999999999999999999999653 568999999998853
Q ss_pred -hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHH
Q 008534 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (562)
Q Consensus 226 -~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 304 (562)
..|+.+|||+|++.+++.+||+|||.|.+..+ .....+.+++++++++.+||.+..++. +++|||||||||
T Consensus 999 ~~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lk---g~~~~~~~~~v~~lL~~vgL~~~~~~~-----~~~LSGGqKQRL 1070 (2272)
T TIGR01257 999 DAVRQSLGMCPQHNILFHHLTVAEHILFYAQLK---GRSWEEAQLEMEAMLEDTGLHHKRNEE-----AQDLSGGMQRKL 1070 (2272)
T ss_pred HHHhhcEEEEecCCcCCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhcCC-----hhhCCHHHHHHH
Confidence 35678999999999999999999999987654 223444556788999999998777664 468999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHH
Q 008534 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (562)
Q Consensus 305 ~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~ 384 (562)
+|||||+.+|+||||||||+|||+.++..+++.|++++ +|+|||++||++. ++..+||||++|++|+++..|+++++.
T Consensus 1071 sLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~-~g~TIIltTHdmd-ea~~laDrI~iL~~GkL~~~Gs~~~Lk 1148 (2272)
T TIGR01257 1071 SVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR-SGRTIIMSTHHMD-EADLLGDRIAIISQGRLYCSGTPLFLK 1148 (2272)
T ss_pred HHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 99999999999999999999999999999999999995 5999999999975 467899999999999999999999998
Q ss_pred HHHH
Q 008534 385 AYFS 388 (562)
Q Consensus 385 ~~f~ 388 (562)
+.|.
T Consensus 1149 ~~~g 1152 (2272)
T TIGR01257 1149 NCFG 1152 (2272)
T ss_pred HhcC
Confidence 7664
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-41 Score=320.70 Aligned_cols=171 Identities=27% Similarity=0.518 Sum_probs=152.9
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
.|+++|++++| +|+|+||+|++|++++|+||||||||||+++|+|.+. +.+|+|.++|.++..
T Consensus 4 ~l~~~~l~~~~------------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~ 69 (182)
T cd03215 4 VLEVRGLSVKG------------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRP--PASGEITLDGKPVTRRSP 69 (182)
T ss_pred EEEEeccEEEe------------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCccCH
Confidence 58999999864 8999999999999999999999999999999999543 568999999998752
Q ss_pred --hccCcEEEEccCC---CCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhH
Q 008534 226 --SLKSKIGFVTQDD---VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGE 300 (562)
Q Consensus 226 --~~~~~igyV~Q~~---~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGq 300 (562)
..++.++|++|++ .+++.+|++||+.+... |||||
T Consensus 70 ~~~~~~~i~~~~q~~~~~~~~~~~t~~e~l~~~~~----------------------------------------LS~G~ 109 (182)
T cd03215 70 RDAIRAGIAYVPEDRKREGLVLDLSVAENIALSSL----------------------------------------LSGGN 109 (182)
T ss_pred HHHHhCCeEEecCCcccCcccCCCcHHHHHHHHhh----------------------------------------cCHHH
Confidence 2466899999995 57888999999986420 99999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeE
Q 008534 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374 (562)
Q Consensus 301 rqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~i 374 (562)
|||++|||||+.+|++|||||||+|||+.++..+.+.|+++.++|+|+|++||++. .+.++||++++|++|++
T Consensus 110 ~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 110 QQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELD-ELLGLCDRILVMYEGRI 182 (182)
T ss_pred HHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEecCCcC
Confidence 99999999999999999999999999999999999999999777899999999975 47788999999999974
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=325.16 Aligned_cols=198 Identities=21% Similarity=0.399 Sum_probs=163.9
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
.|+++|++++|. ...+.+|+|+||+|++|++++|+||||||||||+++|+|... +.+|+|.++|.++..
T Consensus 6 ~l~~~~l~~~~~------~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~ 77 (207)
T cd03369 6 EIEVENLSVRYA------PDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLE--AEEGKIEIDGIDISTIPL 77 (207)
T ss_pred eEEEEEEEEEeC------CCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccC--CCCCeEEECCEEhHHCCH
Confidence 589999999982 112469999999999999999999999999999999999543 568999999998642
Q ss_pred -hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHH
Q 008534 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (562)
Q Consensus 226 -~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 304 (562)
..++.|+||+|++.+|+ .||+||+.+.. .... +.+.+.++ + + ..+..|||||+||+
T Consensus 78 ~~~~~~i~~v~q~~~~~~-~tv~~~l~~~~------~~~~----~~~~~~l~---~----~-----~~~~~LS~G~~qrv 134 (207)
T cd03369 78 EDLRSSLTIIPQDPTLFS-GTIRSNLDPFD------EYSD----EEIYGALR---V----S-----EGGLNLSQGQRQLL 134 (207)
T ss_pred HHHHhhEEEEecCCcccC-ccHHHHhcccC------CCCH----HHHHHHhh---c----c-----CCCCcCCHHHHHHH
Confidence 34678999999998887 59999997531 1111 12333333 2 1 23578999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecCh
Q 008534 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 380 (562)
Q Consensus 305 ~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~ 380 (562)
+|||||+.+|++|||||||+|||+.++..+.+.|+++. +|+|+|++||++.. +. .||++++|++|++++.|++
T Consensus 135 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~th~~~~-~~-~~d~v~~l~~g~i~~~g~~ 207 (207)
T cd03369 135 CLARALLKRPRVLVLDEATASIDYATDALIQKTIREEF-TNSTILTIAHRLRT-II-DYDKILVMDAGEVKEYDHP 207 (207)
T ss_pred HHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHH-Hh-hCCEEEEEECCEEEecCCC
Confidence 99999999999999999999999999999999999985 48999999999764 44 4999999999999988863
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-41 Score=368.57 Aligned_cols=221 Identities=21% Similarity=0.369 Sum_probs=182.4
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
.|+++|+++.|. .++++.+|+|+||+|++||+++|+||||||||||+++|+|.+ .|+.+|+|.++|+++..
T Consensus 257 ~l~~~~l~~~~~-----~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~-~p~~~G~i~~~g~~~~~~~~ 330 (500)
T TIGR02633 257 ILEARNLTCWDV-----INPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAY-PGKFEGNVFINGKPVDIRNP 330 (500)
T ss_pred eEEEeCCccccc-----ccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCC-CCCCCeEEEECCEECCCCCH
Confidence 699999998762 111346999999999999999999999999999999999965 33358999999998742
Q ss_pred --hccCcEEEEccCC---CCCCCCCHHHHHHHHHhhCCC--CCccHHHHHHHHHHHHHHcCCCc-cccccccCcccCCCC
Q 008534 226 --SLKSKIGFVTQDD---VLFPHLTVKETLTYAALLRLP--NTLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVRGVS 297 (562)
Q Consensus 226 --~~~~~igyV~Q~~---~l~~~lTV~enl~~~~~~~~~--~~~~~~~~~~~v~~~l~~lgL~~-~~~t~vg~~~~~~LS 297 (562)
.+++++|||+|++ .+++.+||+||+.++...... ........++++.++++.++|.+ ..++. +..||
T Consensus 331 ~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LS 405 (500)
T TIGR02633 331 AQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLP-----IGRLS 405 (500)
T ss_pred HHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCc-----cccCC
Confidence 2457799999996 588899999999876321110 01123334566889999999963 44554 46899
Q ss_pred hhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEe
Q 008534 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (562)
Q Consensus 298 GGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~ 377 (562)
|||||||+|||||+.+|+||||||||+|||+.++..+++.|++++++|.|||++||++. .+.++||++++|++|+++..
T Consensus 406 gGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~-~~~~~~d~v~~l~~G~i~~~ 484 (500)
T TIGR02633 406 GGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELA-EVLGLSDRVLVIGEGKLKGD 484 (500)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEE
Confidence 99999999999999999999999999999999999999999999888999999999975 47789999999999999988
Q ss_pred cChH
Q 008534 378 GKAS 381 (562)
Q Consensus 378 G~~~ 381 (562)
++.+
T Consensus 485 ~~~~ 488 (500)
T TIGR02633 485 FVNH 488 (500)
T ss_pred Eccc
Confidence 7654
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-42 Score=384.11 Aligned_cols=210 Identities=21% Similarity=0.278 Sum_probs=169.9
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh--
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~-- 225 (562)
..|+++||+|+|+.+ ....+++|+|+||++++|++++|+||||||||||+++|+|. ++ +.+|+|.+||.++..
T Consensus 336 ~~i~~~~v~f~y~~~---~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~-~~-p~~G~i~~~g~~i~~~~ 410 (555)
T TIGR01194 336 DSIELKDVHMNPKAP---EGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGL-YI-PQEGEILLDGAAVSADS 410 (555)
T ss_pred ceEEEEEEEEEeCCC---CCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCC-CC-CCCcEEEECCEECCCCC
Confidence 369999999999321 00124699999999999999999999999999999999984 44 458999999999863
Q ss_pred --hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccC-cccCCCChhHHH
Q 008534 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGG-SFVRGVSGGERK 302 (562)
Q Consensus 226 --~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~-~~~~~LSGGqrq 302 (562)
.+++.++||+|++.+|++ |+++|+. + ...++++.++++.+++.+..+....+ .....|||||||
T Consensus 411 ~~~~~~~i~~v~q~~~lf~~-ti~~n~~-------~-----~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~q 477 (555)
T TIGR01194 411 RDDYRDLFSAIFADFHLFDD-LIGPDEG-------E-----HASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQK 477 (555)
T ss_pred HHHHHhhCcEEccChhhhhh-hhhcccc-------c-----chhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHH
Confidence 567889999999999975 8999841 1 11234566788888876544332211 113579999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH-HHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEe
Q 008534 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQ-DIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (562)
Q Consensus 303 Rv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~-~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~ 377 (562)
|++|||||+.+|+||||||||++||+.++..+.+.+. .+...|+|+|++||+++ ..+.||+|++|++|++++.
T Consensus 478 RlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~--~~~~~d~i~~l~~G~i~~~ 551 (555)
T TIGR01194 478 RLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQ--YFELADQIIKLAAGCIVKD 551 (555)
T ss_pred HHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHH--HHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999998764 45556899999999985 3578999999999999864
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-41 Score=367.41 Aligned_cols=209 Identities=22% Similarity=0.343 Sum_probs=177.6
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
+|+++||+++| +++.+|+|+||+|++|++++|+||||||||||+|+|+|.+. +.+|+|.++|.++..
T Consensus 3 ~l~~~~l~~~~--------~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~--p~~G~i~~~~~~~~~~~~ 72 (490)
T PRK10938 3 SLQISQGTFRL--------SDTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELP--LLSGERQSQFSHITRLSF 72 (490)
T ss_pred eEEEEeEEEEc--------CCeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC--CCCceEEECCcccccCCH
Confidence 58999999998 23469999999999999999999999999999999999653 568999999976532
Q ss_pred -hccCcEEEEccCCCC--C-C-----CCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCC
Q 008534 226 -SLKSKIGFVTQDDVL--F-P-----HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGV 296 (562)
Q Consensus 226 -~~~~~igyV~Q~~~l--~-~-----~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~L 296 (562)
..++.++|++|++.+ + + .+||+||+.+. ....+++.++++.+||.+..+.. +.+|
T Consensus 73 ~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~l~~~~l~~~~~~~-----~~~L 136 (490)
T PRK10938 73 EQLQKLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDE-----------VKDPARCEQLAQQFGITALLDRR-----FKYL 136 (490)
T ss_pred HHHHHHhceeccCcchhhcccchhhccccHHHhcccc-----------hhHHHHHHHHHHHcCCHhhhhCC-----cccC
Confidence 234569999998643 1 1 46888887542 11245678899999998766654 4689
Q ss_pred ChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEE
Q 008534 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (562)
Q Consensus 297 SGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~ 376 (562)
||||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+.+.||+|++|++|++++
T Consensus 137 SgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~-~~~~~~d~v~~l~~G~i~~ 215 (490)
T PRK10938 137 STGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFD-EIPDFVQFAGVLADCTLAE 215 (490)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHH-HHHhhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999999999877999999999975 4778999999999999999
Q ss_pred ecChHHHH
Q 008534 377 FGKASEAM 384 (562)
Q Consensus 377 ~G~~~el~ 384 (562)
.|+++++.
T Consensus 216 ~~~~~~~~ 223 (490)
T PRK10938 216 TGEREEIL 223 (490)
T ss_pred eCCHHHHh
Confidence 99988753
|
|
| >PRK13539 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-40 Score=323.98 Aligned_cols=198 Identities=26% Similarity=0.413 Sum_probs=167.3
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh-hc
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-SL 227 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~-~~ 227 (562)
+|+++||++.| +++.+|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|+++|.++.. ..
T Consensus 2 ~l~~~~l~~~~--------~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~ 71 (207)
T PRK13539 2 MLEGEDLACVR--------GGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLP--PAAGTIKLDGGDIDDPDV 71 (207)
T ss_pred EEEEEeEEEEE--------CCeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEeCcchhh
Confidence 58999999998 23569999999999999999999999999999999999543 568999999987642 25
Q ss_pred cCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHH
Q 008534 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (562)
Q Consensus 228 ~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA 307 (562)
++.++|++|++.+++.+||+||+.+...... . ..+++.++++.+||.+..+.. ++.||||||||++||
T Consensus 72 ~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~---~----~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl~la 139 (207)
T PRK13539 72 AEACHYLGHRNAMKPALTVAENLEFWAAFLG---G----EELDIAAALEAVGLAPLAHLP-----FGYLSAGQKRRVALA 139 (207)
T ss_pred HhhcEEecCCCcCCCCCcHHHHHHHHHHhcC---C----cHHHHHHHHHHcCCHHHHcCC-----hhhcCHHHHHHHHHH
Confidence 6779999999888888999999987653321 1 123477899999997655543 468999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcC
Q 008534 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK 371 (562)
Q Consensus 308 raLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~ 371 (562)
|||+.+|++|||||||+|||+.+...+.+.|++++++|+|||++||++.. +. . |+++.+..
T Consensus 140 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~-~~-~-~~~~~~~~ 200 (207)
T PRK13539 140 RLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLG-LP-G-ARELDLGP 200 (207)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchh-hc-c-CcEEeecC
Confidence 99999999999999999999999999999999987779999999999764 43 3 88887744
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-40 Score=339.92 Aligned_cols=230 Identities=26% Similarity=0.483 Sum_probs=200.3
Q ss_pred CceeEEEEeEEEEEeecccCC---ccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEe
Q 008534 146 LPIYLKFTDVTYKVILKGMTS---SEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP 222 (562)
Q Consensus 146 ~~~~l~~~nvs~~y~~~~~~~---~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~ 222 (562)
.++.++.+||...|+.++.-- .....++++||+++++||.++|||.||||||||-.+|.+.+ +.+|+|.|+|.+
T Consensus 273 ~~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~---~s~G~I~F~G~~ 349 (534)
T COG4172 273 APVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLI---PSQGEIRFDGQD 349 (534)
T ss_pred CCceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhc---CcCceEEECCcc
Confidence 356799999999997754211 12346999999999999999999999999999999999644 236999999999
Q ss_pred CCh-------hccCcEEEEccCCC--CCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCccc
Q 008534 223 YSK-------SLKSKIGFVTQDDV--LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFV 293 (562)
Q Consensus 223 ~~~-------~~~~~igyV~Q~~~--l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~ 293 (562)
+.. .+|+++-.|||||+ |-|.|||.+-|.-+.....| ..++.++++++.+.|+++||+... -++++
T Consensus 350 i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~-~ls~~eR~~rv~~aL~EVGLDp~~----r~RYP 424 (534)
T COG4172 350 IDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEP-KLSAAERDQRVIEALEEVGLDPAT----RNRYP 424 (534)
T ss_pred ccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCC-CCCHHHHHHHHHHHHHHcCCChhH----hhcCC
Confidence 852 46889999999985 88999999999998876543 468899999999999999997532 25689
Q ss_pred CCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCcEEEEEecCCChHHHhcCCEEEEEcCC
Q 008534 294 RGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKG 372 (562)
Q Consensus 294 ~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~Tvii~tH~~~~~i~~~~D~i~vL~~G 372 (562)
+++|||||||++|||||+.+|++++||||||+||-.-+.+|+++|++|.+ .|.+-++||||+. .+-.+||+|+||++|
T Consensus 425 hEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~-VvrAl~~~viVm~~G 503 (534)
T COG4172 425 HEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLA-VVRALCHRVIVMRDG 503 (534)
T ss_pred cccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHH-HHHHhhceEEEEeCC
Confidence 99999999999999999999999999999999999999999999999965 5999999999975 477799999999999
Q ss_pred eEEEecChHHHH
Q 008534 373 SLLYFGKASEAM 384 (562)
Q Consensus 373 ~iv~~G~~~el~ 384 (562)
+||++|+.+++.
T Consensus 504 kiVE~G~~~~if 515 (534)
T COG4172 504 KIVEQGPTEAVF 515 (534)
T ss_pred EEeeeCCHHHHh
Confidence 999999999875
|
|
| >TIGR01166 cbiO cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-40 Score=317.61 Aligned_cols=177 Identities=32% Similarity=0.574 Sum_probs=150.9
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh------hccCcEEEEccCC--CC
Q 008534 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK------SLKSKIGFVTQDD--VL 240 (562)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~------~~~~~igyV~Q~~--~l 240 (562)
++.+|+||||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.++.. .+++.++||+|++ .+
T Consensus 4 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 81 (190)
T TIGR01166 4 GPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLR--PQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQL 81 (190)
T ss_pred ccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceeEEECCEEccccccchHHHHhhEEEEecChhhcc
Confidence 4579999999999999999999999999999999999643 568999999998731 3456799999997 35
Q ss_pred CCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEe
Q 008534 241 FPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLD 320 (562)
Q Consensus 241 ~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLD 320 (562)
++ .||+||+.++.... ........+++.++++.++|.+..++. +..||||||||++|||||+.+|++||||
T Consensus 82 ~~-~tv~~nl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~laral~~~p~llllD 152 (190)
T TIGR01166 82 FA-ADVDQDVAFGPLNL---GLSEAEVERRVREALTAVGASGLRERP-----THCLSGGEKKRVAIAGAVAMRPDVLLLD 152 (190)
T ss_pred cc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCchhhhhCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 64 79999999875432 123344455688899999998766654 4689999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCC
Q 008534 321 EPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPS 356 (562)
Q Consensus 321 EPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~ 356 (562)
|||+|||+.++..+.+.|++++++|+|||++||++.
T Consensus 153 EPt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~ 188 (190)
T TIGR01166 153 EPTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVD 188 (190)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeeccc
Confidence 999999999999999999999877999999999974
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. |
| >PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-39 Score=352.10 Aligned_cols=214 Identities=25% Similarity=0.356 Sum_probs=178.3
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhcc
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~ 228 (562)
+++++||+|.|. .+..+++|+||||+|++|++++|+||||||||||+++|+|.+. +.+|+|.++|.+.
T Consensus 21 mL~lknL~~~~~-----~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~--P~sGeI~I~G~~~----- 88 (549)
T PRK13545 21 FDKLKDLFFRSK-----DGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTM--PNKGTVDIKGSAA----- 88 (549)
T ss_pred eeEEEEEEEecC-----CCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCC--CCceEEEECCEee-----
Confidence 688999988872 1123579999999999999999999999999999999999653 5689999999752
Q ss_pred CcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHH
Q 008534 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGN 308 (562)
Q Consensus 229 ~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAr 308 (562)
++.+.+.+++.+||+||+.+..... .....+..+++.++++.++|.+..+.. ++.||||||||++|||
T Consensus 89 ----~i~~~~~l~~~lTV~EnL~l~~~~~---~~~~~e~~e~i~elLe~lgL~~~ld~~-----~~~LSGGQrQRVaLAr 156 (549)
T PRK13545 89 ----LIAISSGLNGQLTGIENIELKGLMM---GLTKEKIKEIIPEIIEFADIGKFIYQP-----VKTYSSGMKSRLGFAI 156 (549)
T ss_pred ----eEEeccccCCCCcHHHHHHhhhhhc---CCCHHHHHHHHHHHHHHcCChhHhhCC-----cccCCHHHHHHHHHHH
Confidence 2223445667789999998754322 123444455677889999998766654 4689999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHHHHH
Q 008534 309 EIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYF 387 (562)
Q Consensus 309 aLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~~~f 387 (562)
||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||++. .+..+||++++|++|++++.|+++++...|
T Consensus 157 AL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~-~i~~l~DrIivL~~GkIv~~G~~~el~~~~ 234 (549)
T PRK13545 157 SVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLS-QVKSFCTKALWLHYGQVKEYGDIKEVVDHY 234 (549)
T ss_pred HHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEECCHHHHHhhH
Confidence 999999999999999999999999999999999877999999999975 467889999999999999999998876544
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-40 Score=362.57 Aligned_cols=214 Identities=23% Similarity=0.416 Sum_probs=178.9
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
.++++|+++ .+|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|+++..
T Consensus 257 ~l~~~~l~~-------------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~--p~~G~I~~~g~~i~~~~~ 321 (501)
T PRK10762 257 RLKVDNLSG-------------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALP--RTSGYVTLDGHEVVTRSP 321 (501)
T ss_pred EEEEeCccc-------------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCC--CCceEEEECCEECCCCCH
Confidence 588888863 26999999999999999999999999999999999653 458999999988742
Q ss_pred --hccCcEEEEccCC---CCCCCCCHHHHHHHHHhhCCC---CCccHHHHHHHHHHHHHHcCCC-ccccccccCcccCCC
Q 008534 226 --SLKSKIGFVTQDD---VLFPHLTVKETLTYAALLRLP---NTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGV 296 (562)
Q Consensus 226 --~~~~~igyV~Q~~---~l~~~lTV~enl~~~~~~~~~---~~~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~~L 296 (562)
..++.||||+|++ .+++.+||.||+.++...... .........+++.++++.++|. +..++. +..|
T Consensus 322 ~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~L 396 (501)
T PRK10762 322 QDGLANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQA-----IGLL 396 (501)
T ss_pred HHHHHCCCEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCc-----hhhC
Confidence 2456799999996 578889999999875321100 0012233445688999999995 455554 4689
Q ss_pred ChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEE
Q 008534 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (562)
Q Consensus 297 SGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~ 376 (562)
||||||||+|||||+.+|+||||||||+|||+.++..+.+.|++++++|.|||++||++. .+..+||+|++|++|++++
T Consensus 397 SgGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~-~~~~~~d~v~~l~~G~i~~ 475 (501)
T PRK10762 397 SGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMP-EVLGMSDRILVMHEGRISG 475 (501)
T ss_pred CHHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHhhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999999999877999999999975 4778999999999999999
Q ss_pred ecChHHH
Q 008534 377 FGKASEA 383 (562)
Q Consensus 377 ~G~~~el 383 (562)
.|+++++
T Consensus 476 ~~~~~~~ 482 (501)
T PRK10762 476 EFTREQA 482 (501)
T ss_pred EeccccC
Confidence 9987664
|
|
| >COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-41 Score=318.98 Aligned_cols=220 Identities=25% Similarity=0.459 Sum_probs=193.8
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCC----
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---- 224 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~---- 224 (562)
+++++||+++| +.+.||+++|+.|++|.+++|+|||||||||||.+++ |+.. .++|+|+++|.++.
T Consensus 1 MI~i~nv~K~y--------~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~s-RL~~-~d~G~i~i~g~~~~~~~s 70 (252)
T COG4604 1 MITIENVSKSY--------GTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMS-RLLK-KDSGEITIDGLELTSTPS 70 (252)
T ss_pred CeeehhhhHhh--------CCEEeeccceeeecCCceeEEECCCCccHHHHHHHHH-Hhcc-ccCceEEEeeeecccCCh
Confidence 47899999998 4778999999999999999999999999999999999 5543 56899999999985
Q ss_pred hhccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHH
Q 008534 225 KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (562)
Q Consensus 225 ~~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 304 (562)
+.+.++++.+-|+..+-..+||+|-+.||.... ..+....+++..+++.++.++|.+..|.. ..+||||||||.
T Consensus 71 ~~LAk~lSILkQ~N~i~~rlTV~dLv~FGRfPY-SqGRlt~eD~~~I~~aieyl~L~~l~dry-----Ld~LSGGQrQRA 144 (252)
T COG4604 71 KELAKKLSILKQENHINSRLTVRDLVGFGRFPY-SQGRLTKEDRRIINEAIEYLHLEDLSDRY-----LDELSGGQRQRA 144 (252)
T ss_pred HHHHHHHHHHHhhchhhheeEHHHHhhcCCCcc-cCCCCchHHHHHHHHHHHHhcccchHHHh-----HHhcccchhhhh
Confidence 356778999999999888999999999985332 12333456677899999999999877764 468999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHH
Q 008534 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (562)
Q Consensus 305 ~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el 383 (562)
-||..|+.+.+.++||||.++||-.....+++.|++++++ |+||+++.||... ...++|+|+-|++|+++..|+++++
T Consensus 145 fIAMVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINf-AS~YsD~IVAlK~G~vv~~G~~~ei 223 (252)
T COG4604 145 FIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINF-ASCYSDHIVALKNGKVVKQGSPDEI 223 (252)
T ss_pred hhheeeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccH-HHhhhhheeeecCCEEEecCCHHHh
Confidence 9999999999999999999999999999999999999876 9999999999875 5578999999999999999999998
Q ss_pred HH
Q 008534 384 MA 385 (562)
Q Consensus 384 ~~ 385 (562)
+.
T Consensus 224 i~ 225 (252)
T COG4604 224 IQ 225 (252)
T ss_pred cC
Confidence 63
|
|
| >TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-40 Score=324.54 Aligned_cols=197 Identities=28% Similarity=0.432 Sum_probs=163.3
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEccCCCCCC--CCCHHHHHHHHHh
Q 008534 178 GSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFP--HLTVKETLTYAAL 255 (562)
Q Consensus 178 ~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~~~igyV~Q~~~l~~--~lTV~enl~~~~~ 255 (562)
|+|++||+++|+||||||||||+++|+|... +.+|+|.+||+++.. .++.++|++|++.+++ .+|+.||+.++..
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~-~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~ 77 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIP--PAKGTVKVAGASPGK-GWRHIGYVPQRHEFAWDFPISVAHTVMSGRT 77 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCccchH-hhCcEEEecccccccCCCCccHHHHHHhccc
Confidence 5789999999999999999999999999543 568999999998643 4567999999987642 4799999987632
Q ss_pred hCCC-CCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 008534 256 LRLP-NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRI 334 (562)
Q Consensus 256 ~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i 334 (562)
.... ..........++.++++.+++.+..++. +.+|||||||||+|||||+.+|++|||||||+|||+.++..+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l 152 (223)
T TIGR03771 78 GHIGWLRRPCVADFAAVRDALRRVGLTELADRP-----VGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELL 152 (223)
T ss_pred cccccccCCcHHHHHHHHHHHHHhCCchhhcCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH
Confidence 1100 0011123345678899999998766554 468999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHH
Q 008534 335 VQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (562)
Q Consensus 335 ~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~ 384 (562)
.+.|++++++|+|+|++||++. .+.+.||+++++ +|++++.|+++++.
T Consensus 153 ~~~l~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l-~G~i~~~~~~~~~~ 200 (223)
T TIGR03771 153 TELFIELAGAGTAILMTTHDLA-QAMATCDRVVLL-NGRVIADGTPQQLQ 200 (223)
T ss_pred HHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEE-CCEEEeecCHHHhc
Confidence 9999999877999999999976 477899999999 89999999988763
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown. |
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-40 Score=362.70 Aligned_cols=215 Identities=20% Similarity=0.372 Sum_probs=179.3
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
.++++|+++. .+|+|+||+|++||+++|+||||||||||+++|+|.+ ++.+|+|.++|+++..
T Consensus 257 ~l~~~~~~~~------------~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~--~p~~G~i~~~g~~~~~~~~ 322 (501)
T PRK11288 257 RLRLDGLKGP------------GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGAT--RRTAGQVYLDGKPIDIRSP 322 (501)
T ss_pred EEEEeccccC------------CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCC--cCCCceEEECCEECCCCCH
Confidence 5888888631 4899999999999999999999999999999999965 3568999999988642
Q ss_pred --hccCcEEEEccCC---CCCCCCCHHHHHHHHHhhCC-CCC--ccHHHHHHHHHHHHHHcCCC-ccccccccCcccCCC
Q 008534 226 --SLKSKIGFVTQDD---VLFPHLTVKETLTYAALLRL-PNT--LTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGV 296 (562)
Q Consensus 226 --~~~~~igyV~Q~~---~l~~~lTV~enl~~~~~~~~-~~~--~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~~L 296 (562)
..++.++|++|++ .+|+.+||.||+.++..... +.. ......++.+.++++.+++. +..++. +..|
T Consensus 323 ~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~L 397 (501)
T PRK11288 323 RDAIRAGIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQL-----IMNL 397 (501)
T ss_pred HHHHhCCCEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCc-----cccC
Confidence 2356799999996 48888999999987532110 001 11223345678899999994 555654 4689
Q ss_pred ChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEE
Q 008534 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (562)
Q Consensus 297 SGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~ 376 (562)
||||||||+|||||+.+|+||||||||+|||+.++..+++.|+++++.|.|||++|||+. .+..+||++++|++|++++
T Consensus 398 SgGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~-~~~~~~d~i~~l~~g~i~~ 476 (501)
T PRK11288 398 SGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLP-EVLGVADRIVVMREGRIAG 476 (501)
T ss_pred CHHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHhhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999999999888999999999975 4778999999999999999
Q ss_pred ecChHHH
Q 008534 377 FGKASEA 383 (562)
Q Consensus 377 ~G~~~el 383 (562)
.|+++++
T Consensus 477 ~~~~~~~ 483 (501)
T PRK11288 477 ELAREQA 483 (501)
T ss_pred EEccccC
Confidence 9988663
|
|
| >cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-40 Score=315.79 Aligned_cols=175 Identities=33% Similarity=0.579 Sum_probs=149.7
Q ss_pred EEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh----h
Q 008534 151 KFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----S 226 (562)
Q Consensus 151 ~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~----~ 226 (562)
+++||+++|. .+.+|+|+||+|++||+++|+||||||||||+++|+|.. ++.+|+|.++|.++.. .
T Consensus 1 ~~~~l~~~~~--------~~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~--~~~~G~v~~~g~~~~~~~~~~ 70 (180)
T cd03214 1 EVENLSVGYG--------GRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLL--KPSSGEILLDGKDLASLSPKE 70 (180)
T ss_pred CeeEEEEEEC--------CeeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCC--CCCCcEEEECCEECCcCCHHH
Confidence 4789999882 356999999999999999999999999999999999954 3568999999998742 2
Q ss_pred ccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHH
Q 008534 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (562)
Q Consensus 227 ~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~I 306 (562)
+++.++|++| +++.+||.+..++ .+..||||||||++|
T Consensus 71 ~~~~i~~~~q-------------------------------------~l~~~gl~~~~~~-----~~~~LS~G~~qrl~l 108 (180)
T cd03214 71 LARKIAYVPQ-------------------------------------ALELLGLAHLADR-----PFNELSGGERQRVLL 108 (180)
T ss_pred HHHHHhHHHH-------------------------------------HHHHcCCHhHhcC-----CcccCCHHHHHHHHH
Confidence 3456888888 4455666554443 346899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEec
Q 008534 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (562)
Q Consensus 307 AraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G 378 (562)
||||+.+|++|||||||+|||+.++..+.+.|++++++ +.|+|++||++. .+.+.||++++|++|++++.|
T Consensus 109 aral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~-~~~~~~d~~~~l~~g~i~~~~ 180 (180)
T cd03214 109 ARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLN-LAARYADRVILLKDGRIVAQG 180 (180)
T ss_pred HHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999999999999999999776 899999999976 466889999999999998754
|
Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. |
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-40 Score=319.26 Aligned_cols=194 Identities=27% Similarity=0.447 Sum_probs=152.6
Q ss_pred EEEEeEEEEEeecccCCcc--ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhc
Q 008534 150 LKFTDVTYKVILKGMTSSE--EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227 (562)
Q Consensus 150 l~~~nvs~~y~~~~~~~~~--~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~ 227 (562)
++++||+++|.. .. .+++|+|+||+|++|++++|+||||||||||+++|+|.. ++.+|+|.++|
T Consensus 1 l~~~~l~~~~~~-----~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~--~~~~G~i~~~g------- 66 (204)
T cd03250 1 ISVEDASFTWDS-----GEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGEL--EKLSGSVSVPG------- 66 (204)
T ss_pred CEEeEEEEecCC-----CCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcC--CCCCCeEEEcC-------
Confidence 478999999821 11 136999999999999999999999999999999999954 35689999998
Q ss_pred cCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCc-------cccccccCcccCCCChhH
Q 008534 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-------CQDTMIGGSFVRGVSGGE 300 (562)
Q Consensus 228 ~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~t~vg~~~~~~LSGGq 300 (562)
+|+|++|++.+|+ .|++||+.+.... ... ...+.++.+++.+ ..++.+. ..+..|||||
T Consensus 67 --~i~~~~q~~~l~~-~t~~enl~~~~~~------~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~lS~G~ 132 (204)
T cd03250 67 --SIAYVSQEPWIQN-GTIRENILFGKPF------DEE----RYEKVIKACALEPDLEILPDGDLTEIG-EKGINLSGGQ 132 (204)
T ss_pred --EEEEEecCchhcc-CcHHHHhccCCCc------CHH----HHHHHHHHcCcHHHHHhccCcccceec-CCCCcCCHHH
Confidence 5999999999985 6999999875321 111 1122222222221 2233322 3457899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCe
Q 008534 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQ-MLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGS 373 (562)
Q Consensus 301 rqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~-~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~ 373 (562)
|||++|||||+.+|+++||||||++||+.++..+.+ .++++.++|+|||++||++.. +.. ||++++|++|+
T Consensus 133 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~-~~~-~d~i~~l~~G~ 204 (204)
T cd03250 133 KQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQL-LPH-ADQIVVLDNGR 204 (204)
T ss_pred HHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHH-Hhh-CCEEEEEeCCC
Confidence 999999999999999999999999999999999998 466666668999999999754 444 99999999985
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=363.00 Aligned_cols=203 Identities=23% Similarity=0.313 Sum_probs=170.3
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
.++++||+|+|+ .++++|+|+||+|++|+.++|+||||||||||+++|+|. ++ +.+|+|.+||.++..
T Consensus 322 ~i~~~~v~f~y~-------~~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~-~~-~~~G~i~~~g~~~~~~~~ 392 (547)
T PRK10522 322 TLELRNVTFAYQ-------DNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGL-YQ-PQSGEILLDGKPVTAEQP 392 (547)
T ss_pred eEEEEEEEEEeC-------CCCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCC-CC-CCCeEEEECCEECCCCCH
Confidence 699999999983 234699999999999999999999999999999999984 44 458999999999863
Q ss_pred -hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCc--ccCCCChhHHH
Q 008534 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGS--FVRGVSGGERK 302 (562)
Q Consensus 226 -~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~--~~~~LSGGqrq 302 (562)
.++++|+||+|++.+|+. |++|| + + . ..++.+.++++.+++.+..+. ++. ....|||||||
T Consensus 393 ~~~~~~i~~v~q~~~lf~~-ti~~n---~-----~-~----~~~~~~~~~~~~~~l~~~~~~--~~~~~~G~~LSgGq~q 456 (547)
T PRK10522 393 EDYRKLFSAVFTDFHLFDQ-LLGPE---G-----K-P----ANPALVEKWLERLKMAHKLEL--EDGRISNLKLSKGQKK 456 (547)
T ss_pred HHHhhheEEEecChhHHHH-hhccc---c-----C-c----hHHHHHHHHHHHcCCchhhhc--cccCCCCCCCCHHHHH
Confidence 568899999999999974 88887 1 0 1 123456788888888754432 221 13579999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEec
Q 008534 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (562)
Q Consensus 303 Rv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G 378 (562)
|++|||||+++|++||||||||+||+.++..+.+.|.+..+ .++|+|++||+++ ....||+|++|++|++++..
T Consensus 457 Rl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~--~~~~~d~i~~l~~G~i~e~~ 531 (547)
T PRK10522 457 RLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDH--YFIHADRLLEMRNGQLSELT 531 (547)
T ss_pred HHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechH--HHHhCCEEEEEECCEEEEec
Confidence 99999999999999999999999999999999999987643 5899999999975 46789999999999998773
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-41 Score=409.69 Aligned_cols=340 Identities=18% Similarity=0.175 Sum_probs=219.5
Q ss_pred HHHHHHHHHHHHhhcCCCccccccccCCCCcchhhhhhhhhhhcCCCcccccccceeeeeecccccccccc-cccchhhh
Q 008534 13 TKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELD-EVSSGAAL 91 (562)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~ 91 (562)
+.++.-.+.++...|.+.+.++||.|+.+....+++.+..........+.....+..... ......+. -+..|+.+
T Consensus 470 ~~~~~~d~r~~~~~E~l~gi~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~fg~~~ 546 (1495)
T PLN03232 470 EGLQWTDKRVGIINEILASMDTVKCYAWEKSFESRIQGIRNEELSWFRKAQLLSAFNSFI---LNSIPVVVTLVSFGVFV 546 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 334455666778888899999999999988777777643322222211111000000000 00000011 12345554
Q ss_pred hhhhhhhhhhhcccccCCC----CccccccC------CCCCCCCCccccccccCCCCCCCCCCCCceeEEEEeEEEEEee
Q 008534 92 SRASSASLGLSFSFTGFTM----PPDEIADS------KPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLKFTDVTYKVIL 161 (562)
Q Consensus 92 ~~~~~~~~g~~~~~~~~~~----~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~nvs~~y~~ 161 (562)
...+..+.|..+++..+.. |...+... ...+..++.+-+...+...............++++|++|.|+.
T Consensus 547 v~~~~lt~g~vf~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~L~~~~~~~~~~~~~~~~~~~I~~~~vsF~y~~ 626 (1495)
T PLN03232 547 LLGGDLTPARAFTSLSLFAVLRSPLNMLPNLLSQVVNANVSLQRIEELLLSEERILAQNPPLQPGAPAISIKNGYFSWDS 626 (1495)
T ss_pred HhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccccCCcCCCCCcEEEEeeEEEcCC
Confidence 5445555565555432111 11100000 0000011111111110000000000011235999999999831
Q ss_pred cccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEccCCCCC
Q 008534 162 KGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLF 241 (562)
Q Consensus 162 ~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~~~igyV~Q~~~l~ 241 (562)
..++++|+|+||+|++||.++|+||||||||||+++|+|.+ +| .+|.+. .+++.|+||+|++.+|
T Consensus 627 -----~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~-~~-~~G~i~--------~~~~~Iayv~Q~p~Lf 691 (1495)
T PLN03232 627 -----KTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGEL-SH-AETSSV--------VIRGSVAYVPQVSWIF 691 (1495)
T ss_pred -----CCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-cc-cCCCEE--------EecCcEEEEcCccccc
Confidence 12467999999999999999999999999999999999854 33 466552 3567899999999999
Q ss_pred CCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHc-------CCCccccccccCcccCCCChhHHHHHHHHHHHhhCC
Q 008534 242 PHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINEL-------GLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINP 314 (562)
Q Consensus 242 ~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~l-------gL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P 314 (562)
+ .||+|||.|+.. .++++ .+++++.. .|+++.+|.+|++. ..|||||||||+|||||+++|
T Consensus 692 ~-gTIreNI~fg~~------~~~e~----~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G-~~LSGGQkQRIaLARAly~~~ 759 (1495)
T PLN03232 692 N-ATVRENILFGSD------FESER----YWRAIDVTALQHDLDLLPGRDLTEIGERG-VNISGGQKQRVSMARAVYSNS 759 (1495)
T ss_pred c-ccHHHHhhcCCc------cCHHH----HHHHHHHhCCHHHHHhCCCCCCceecCCC-cccCHHHHHHHHHHHHHhcCC
Confidence 7 599999999742 12222 22233222 45778899999764 469999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHH-HHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHHH
Q 008534 315 SLLFLDEPTSGLDSTTALRIVQM-LQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (562)
Q Consensus 315 ~iLlLDEPTsgLD~~~~~~i~~~-L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~~ 385 (562)
+|||||||||+||+.++..+++. ++.+. +++|+|++||+++. ...||+|++|++|++++.|+++++++
T Consensus 760 ~IlLLDEptSaLD~~t~~~I~~~~l~~~l-~~kT~IlvTH~~~~--l~~aD~Ii~L~~G~i~~~Gt~~eL~~ 828 (1495)
T PLN03232 760 DIYIFDDPLSALDAHVAHQVFDSCMKDEL-KGKTRVLVTNQLHF--LPLMDRIILVSEGMIKEEGTFAELSK 828 (1495)
T ss_pred CEEEEcCCccccCHHHHHHHHHHHhhhhh-cCCEEEEEECChhh--HHhCCEEEEEeCCEEEEecCHHHHHh
Confidence 99999999999999999988765 44433 58999999999864 57899999999999999999999864
|
|
| >TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-39 Score=338.82 Aligned_cols=187 Identities=31% Similarity=0.524 Sum_probs=162.3
Q ss_pred EECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh--hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHH
Q 008534 188 LMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQ 265 (562)
Q Consensus 188 lvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~ 265 (562)
|+||||||||||+++|+|... +.+|+|.++|+++.. ..++.|+||+|++.+|+++||+||+.|+...+ .....
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~--p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~---~~~~~ 75 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQ--PDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMR---KVPRA 75 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCC--CCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhc---CCCHH
Confidence 689999999999999999543 568999999998753 24567999999999999999999999986432 22344
Q ss_pred HHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-
Q 008534 266 QKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA- 344 (562)
Q Consensus 266 ~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~- 344 (562)
+..+++.++++.++|.+..++. +.+|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++.++
T Consensus 76 ~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~ 150 (325)
T TIGR01187 76 EIKPRVLEALRLVQLEEFADRK-----PHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQL 150 (325)
T ss_pred HHHHHHHHHHHHcCCcchhcCC-----hhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhc
Confidence 4556788999999998766654 5789999999999999999999999999999999999999999999999765
Q ss_pred CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHHH
Q 008534 345 GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (562)
Q Consensus 345 g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~~ 385 (562)
|+|||++||++. ++..+||+|++|++|++++.|+++++..
T Consensus 151 g~tiiivTHd~~-e~~~~~d~i~vl~~G~i~~~g~~~~~~~ 190 (325)
T TIGR01187 151 GITFVFVTHDQE-EAMTMSDRIAIMRKGKIAQIGTPEEIYE 190 (325)
T ss_pred CCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 899999999975 4778999999999999999999998753
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included). |
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-39 Score=318.72 Aligned_cols=200 Identities=26% Similarity=0.426 Sum_probs=157.9
Q ss_pred EEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh-----
Q 008534 151 KFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----- 225 (562)
Q Consensus 151 ~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~----- 225 (562)
.+.|+.|.|. ..+++|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.++..
T Consensus 2 ~~~~~~~~~~-------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~ 72 (218)
T cd03290 2 QVTNGYFSWG-------SGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQ--TLEGKVHWSNKNESEPSFEA 72 (218)
T ss_pred eeeeeEEecC-------CCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCC--CCCCeEEECCcccccccccc
Confidence 4678888872 23579999999999999999999999999999999999653 458999999987632
Q ss_pred ---hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccc-------cccccCcccCC
Q 008534 226 ---SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQ-------DTMIGGSFVRG 295 (562)
Q Consensus 226 ---~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-------~t~vg~~~~~~ 295 (562)
..++.++|++|++.+|+ .|++||+.+... .... ...++++.++|.+.. ++.. +..+..
T Consensus 73 ~~~~~~~~i~~~~q~~~~~~-~t~~~nl~~~~~------~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~ 140 (218)
T cd03290 73 TRSRNRYSVAYAAQKPWLLN-ATVEENITFGSP------FNKQ----RYKAVTDACSLQPDIDLLPFGDQTEI-GERGIN 140 (218)
T ss_pred cchhhcceEEEEcCCCcccc-ccHHHHHhhcCc------CCHH----HHHHHHHHhCcHHHHHhCcCccccCc-ccCCCc
Confidence 23467999999998885 799999987531 1111 123344445543322 2222 234678
Q ss_pred CChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH--HHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCe
Q 008534 296 VSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQ--MLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGS 373 (562)
Q Consensus 296 LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~--~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~ 373 (562)
|||||||||+|||||+.+|++|||||||+|||+.++..+++ .++.+.+.|.|+|++||++.. + ..||++++|++|+
T Consensus 141 LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~-~-~~~d~i~~l~~G~ 218 (218)
T cd03290 141 LSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQY-L-PHADWIIAMKDGS 218 (218)
T ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHH-H-hhCCEEEEecCCC
Confidence 99999999999999999999999999999999999999998 666666668999999999864 4 5799999999884
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-39 Score=358.95 Aligned_cols=214 Identities=22% Similarity=0.310 Sum_probs=176.7
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
.|+++|+++ .+|+||||+|++|++++|+||||||||||+++|+|.+. +.+|+|.++|.++..
T Consensus 268 ~l~~~~l~~-------------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~i~~~~~ 332 (510)
T PRK15439 268 VLTVEDLTG-------------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRP--ARGGRIMLNGKEINALST 332 (510)
T ss_pred eEEEeCCCC-------------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC--CCCcEEEECCEECCCCCH
Confidence 688888872 15999999999999999999999999999999999643 558999999998742
Q ss_pred --hccCcEEEEccCC---CCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCC-ccccccccCcccCCCChh
Q 008534 226 --SLKSKIGFVTQDD---VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVSGG 299 (562)
Q Consensus 226 --~~~~~igyV~Q~~---~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~~LSGG 299 (562)
..++.|+||+|++ .+|+.+|+.||+.................++.+.++++.++|. +..++. +..||||
T Consensus 333 ~~~~~~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LSgG 407 (510)
T PRK15439 333 AQRLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQA-----ARTLSGG 407 (510)
T ss_pred HHHHhCCcEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCc-----cccCCcH
Confidence 1346799999985 4888899999996431110010011222345678899999996 556654 4689999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecC
Q 008534 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (562)
Q Consensus 300 qrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (562)
|||||+|||||+.+|+||||||||+|||+.++..+.+.|++++++|.|||++||++. .+.++||++++|++|++++.|+
T Consensus 408 ~kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~-~i~~~~d~i~~l~~G~i~~~~~ 486 (510)
T PRK15439 408 NQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLE-EIEQMADRVLVMHQGEISGALT 486 (510)
T ss_pred HHHHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEEEc
Confidence 999999999999999999999999999999999999999999878999999999975 4778999999999999999998
Q ss_pred hHHH
Q 008534 380 ASEA 383 (562)
Q Consensus 380 ~~el 383 (562)
++++
T Consensus 487 ~~~~ 490 (510)
T PRK15439 487 GAAI 490 (510)
T ss_pred cccC
Confidence 7654
|
|
| >COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-40 Score=327.45 Aligned_cols=195 Identities=30% Similarity=0.497 Sum_probs=171.5
Q ss_pred eceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh--------hccCcEEEEccCCCCCCCCC
Q 008534 174 NGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--------SLKSKIGFVTQDDVLFPHLT 245 (562)
Q Consensus 174 ~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--------~~~~~igyV~Q~~~l~~~lT 245 (562)
=+++|..+.-.++||-|+||||||||+|+|+|... +++|.|.+||..+.+ ..+++|||||||..|||++|
T Consensus 15 l~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~r--PdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~t 92 (352)
T COG4148 15 LDANFTLPARGITALFGPSGSGKTSLINMIAGLTR--PDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYT 92 (352)
T ss_pred EEEeccCCCCceEEEecCCCCChhhHHHHHhccCC--ccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceE
Confidence 36788887757999999999999999999999654 568999999986531 24788999999999999999
Q ss_pred HHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 008534 246 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSG 325 (562)
Q Consensus 246 V~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsg 325 (562)
|+.||.|+.... .....+++++.+|+.+..+. ++..|||||||||+|+|||++.|++|+||||.++
T Consensus 93 VrgNL~YG~~~~---------~~~~fd~iv~lLGI~hLL~R-----~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaS 158 (352)
T COG4148 93 VRGNLRYGMWKS---------MRAQFDQLVALLGIEHLLDR-----YPGTLSGGEKQRVAIGRALLTAPELLLMDEPLAS 158 (352)
T ss_pred Eecchhhhhccc---------chHhHHHHHHHhCcHHHHhh-----CCCccCcchhhHHHHHHHHhcCCCeeeecCchhh
Confidence 999999986321 23456778899999988776 4678999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHHH
Q 008534 326 LDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (562)
Q Consensus 326 LD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~~ 385 (562)
||-....+++-.|.++.++ +..|+++||-+. ++.++||+|++|++|++.++|+.+++..
T Consensus 159 LD~~RK~EilpylERL~~e~~IPIlYVSHS~~-Ev~RLAd~vV~le~GkV~A~g~~e~v~~ 218 (352)
T COG4148 159 LDLPRKREILPYLERLRDEINIPILYVSHSLD-EVLRLADRVVVLENGKVKASGPLEEVWG 218 (352)
T ss_pred cccchhhHHHHHHHHHHHhcCCCEEEEecCHH-HHHhhhheEEEecCCeEEecCcHHHHhc
Confidence 9999999999999999876 789999999965 6889999999999999999999998753
|
|
| >cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-39 Score=308.35 Aligned_cols=167 Identities=37% Similarity=0.647 Sum_probs=147.1
Q ss_pred EEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh----
Q 008534 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (562)
Q Consensus 150 l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~---- 225 (562)
|+++|+++.|. .....+|+|+||+|++|++++|+||||||||||+++|+|.+. +.+|+|.++|.++..
T Consensus 1 l~~~~l~~~~~------~~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~ 72 (171)
T cd03228 1 IEFKNVSFSYP------GRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYD--PTSGEILIDGVDLRDLDLE 72 (171)
T ss_pred CEEEEEEEEcC------CCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCCCEEEECCEEhhhcCHH
Confidence 46899999882 112369999999999999999999999999999999999643 568999999998742
Q ss_pred hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHH
Q 008534 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC 305 (562)
Q Consensus 226 ~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ 305 (562)
.+++.++|++|++.+|+ .|++||+ |||||||||+
T Consensus 73 ~~~~~i~~~~~~~~~~~-~t~~e~l---------------------------------------------LS~G~~~rl~ 106 (171)
T cd03228 73 SLRKNIAYVPQDPFLFS-GTIRENI---------------------------------------------LSGGQRQRIA 106 (171)
T ss_pred HHHhhEEEEcCCchhcc-chHHHHh---------------------------------------------hCHHHHHHHH
Confidence 34667999999998886 5999887 9999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCe
Q 008534 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGS 373 (562)
Q Consensus 306 IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~ 373 (562)
|||||+.+|++|||||||+|||+.++..+.+.|+++.+ ++|||++||++.. +.. ||++++|++|+
T Consensus 107 la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~-~~~-~d~~~~l~~g~ 171 (171)
T cd03228 107 IARALLRDPPILILDEATSALDPETEALILEALRALAK-GKTVIVIAHRLST-IRD-ADRIIVLDDGR 171 (171)
T ss_pred HHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcC-CCEEEEEecCHHH-HHh-CCEEEEEcCCC
Confidence 99999999999999999999999999999999999864 7999999999764 555 99999999985
|
They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-39 Score=341.16 Aligned_cols=215 Identities=27% Similarity=0.392 Sum_probs=190.6
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCC----
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---- 224 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~---- 224 (562)
.++++++++.| +...+++||||+|++||+.||+|.||||||||+++|.|. +. |++|+|.+||+++.
T Consensus 4 ~l~~~~itK~f--------~~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~-~~-P~~GeI~v~G~~v~~~sP 73 (501)
T COG3845 4 ALEMRGITKRF--------PGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGL-YQ-PDSGEIRVDGKEVRIKSP 73 (501)
T ss_pred eEEEeccEEEc--------CCEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCc-cc-CCcceEEECCEEeccCCH
Confidence 68999999998 367899999999999999999999999999999999995 44 45899999999874
Q ss_pred -hhccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHH
Q 008534 225 -KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (562)
Q Consensus 225 -~~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqR 303 (562)
+..+..||+|+|++.|+|++||.|||.++...............+++.++.+.+||+-..|..+ ..||-|||||
T Consensus 74 ~dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V-----~dLsVG~qQR 148 (501)
T COG3845 74 RDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKV-----ADLSVGEQQR 148 (501)
T ss_pred HHHHHcCCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCcccee-----ecCCcchhHH
Confidence 2456789999999999999999999999864322223456677788999999999986666654 5899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecC
Q 008534 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (562)
Q Consensus 304 v~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (562)
|.|-++|+++|++|||||||+-|-|....++++.|++++++|+|||+|||.+. ++.+.|||+-||..|+++..-+
T Consensus 149 VEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~-Ev~~iaDrvTVLR~Gkvvgt~~ 223 (501)
T COG3845 149 VEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLK-EVMAIADRVTVLRRGKVVGTVD 223 (501)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH-HHHHhhCeeEEEeCCeEEeeec
Confidence 99999999999999999999999999999999999999999999999999976 5889999999999999876655
|
|
| >PRK13541 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-39 Score=311.71 Aligned_cols=192 Identities=21% Similarity=0.314 Sum_probs=159.5
Q ss_pred EEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhccC
Q 008534 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKS 229 (562)
Q Consensus 150 l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~~ 229 (562)
|+++|++++|. ++.+++ +||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.++....++
T Consensus 2 l~~~~l~~~~~--------~~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i~~~~~~ 70 (195)
T PRK13541 2 LSLHQLQFNIE--------QKNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQ--PSSGNIYYKNCNINNIAKP 70 (195)
T ss_pred eEEEEeeEEEC--------CcEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCcccChhhhh
Confidence 78999999981 344555 999999999999999999999999999999543 5689999999987543345
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHH
Q 008534 230 KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNE 309 (562)
Q Consensus 230 ~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAra 309 (562)
.++|++|++.+++.+||+||+.+..... . ..+++.++++.+++.+..++. ++.||||||||++||||
T Consensus 71 ~~~~~~~~~~~~~~~tv~~~l~~~~~~~---~-----~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~~rl~la~a 137 (195)
T PRK13541 71 YCTYIGHNLGLKLEMTVFENLKFWSEIY---N-----SAETLYAAIHYFKLHDLLDEK-----CYSLSSGMQKIVAIARL 137 (195)
T ss_pred hEEeccCCcCCCccCCHHHHHHHHHHhc---c-----cHHHHHHHHHHcCCHhhhccC-----hhhCCHHHHHHHHHHHH
Confidence 6999999987777899999998864321 1 133567788889987665543 46899999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEE
Q 008534 310 IIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLI 367 (562)
Q Consensus 310 Ll~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~ 367 (562)
|+.+|++|||||||+|||+.++..+.+.|++..+.|+|+|++||++.. ...+|-|.
T Consensus 138 l~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~--i~~~~~~~ 193 (195)
T PRK13541 138 IACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESS--IKSAQILQ 193 (195)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCccc--cchhheec
Confidence 999999999999999999999999999998776678999999999764 35566553
|
|
| >cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-39 Score=303.68 Aligned_cols=157 Identities=31% Similarity=0.479 Sum_probs=141.2
Q ss_pred EEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh----
Q 008534 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (562)
Q Consensus 150 l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~---- 225 (562)
|+++||++.|. ++++|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.++..
T Consensus 1 l~~~~l~~~~~--------~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~v~~~g~~~~~~~~~ 70 (163)
T cd03216 1 LELRGITKRFG--------GVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYK--PDSGEILVDGKEVSFASPR 70 (163)
T ss_pred CEEEEEEEEEC--------CeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEECCcCCHH
Confidence 46899999982 3479999999999999999999999999999999999643 568999999998752
Q ss_pred -hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHH
Q 008534 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (562)
Q Consensus 226 -~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 304 (562)
..++.++|++| ||||||||+
T Consensus 71 ~~~~~~i~~~~q-----------------------------------------------------------LS~G~~qrl 91 (163)
T cd03216 71 DARRAGIAMVYQ-----------------------------------------------------------LSVGERQMV 91 (163)
T ss_pred HHHhcCeEEEEe-----------------------------------------------------------cCHHHHHHH
Confidence 23567899888 999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEE
Q 008534 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (562)
Q Consensus 305 ~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~ 376 (562)
+|||||+.+|++|||||||+|||+.++..+.+.|++++++|.|||++||++. .+.+.||++++|++|++++
T Consensus 92 ~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 92 EIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLD-EVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred HHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEe
Confidence 9999999999999999999999999999999999999877999999999975 4667899999999999975
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=326.83 Aligned_cols=204 Identities=29% Similarity=0.440 Sum_probs=163.0
Q ss_pred CceeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh
Q 008534 146 LPIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK 225 (562)
Q Consensus 146 ~~~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~ 225 (562)
.+..|+++|+++. .+++|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|
T Consensus 36 ~~~~l~i~nls~~----------~~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~--p~~G~I~i~g----- 98 (282)
T cd03291 36 DDNNLFFSNLCLV----------GAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELE--PSEGKIKHSG----- 98 (282)
T ss_pred CCCeEEEEEEEEe----------cccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECC-----
Confidence 3456999999984 2469999999999999999999999999999999999653 5689999998
Q ss_pred hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCC-------ccccccccCcccCCCCh
Q 008534 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-------RCQDTMIGGSFVRGVSG 298 (562)
Q Consensus 226 ~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~t~vg~~~~~~LSG 298 (562)
.|+|++|++.+++. ||+||+.++... ... ++.+.++.+++. ...++.++ ..+..|||
T Consensus 99 ----~i~yv~q~~~l~~~-tv~enl~~~~~~------~~~----~~~~~l~~~~l~~~l~~~~~~~~~~~~-~~~~~LSg 162 (282)
T cd03291 99 ----RISFSSQFSWIMPG-TIKENIIFGVSY------DEY----RYKSVVKACQLEEDITKFPEKDNTVLG-EGGITLSG 162 (282)
T ss_pred ----EEEEEeCccccccc-CHHHHhhccccc------CHH----HHHHHHHHhCCHHHHHhccccccceec-CCCCcCCH
Confidence 39999999998875 999999875311 110 112223333332 22233332 23568999
Q ss_pred hHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHH-HHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEe
Q 008534 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQML-QDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (562)
Q Consensus 299 GqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L-~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~ 377 (562)
|||||++|||+|+.+|++|||||||+|||+.++..+++.+ +.+. .+.|||++||++.. + ..||++++|++|++++.
T Consensus 163 Gq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~-~~~tIiiisH~~~~-~-~~~d~i~~l~~G~i~~~ 239 (282)
T cd03291 163 GQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLM-ANKTRILVTSKMEH-L-KKADKILILHEGSSYFY 239 (282)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhh-CCCEEEEEeCChHH-H-HhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999865 5554 47899999999764 4 57999999999999999
Q ss_pred cChHHHHH
Q 008534 378 GKASEAMA 385 (562)
Q Consensus 378 G~~~el~~ 385 (562)
|+++++..
T Consensus 240 g~~~~~~~ 247 (282)
T cd03291 240 GTFSELQS 247 (282)
T ss_pred CCHHHHHh
Confidence 99988753
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PRK10535 macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=360.70 Aligned_cols=220 Identities=27% Similarity=0.468 Sum_probs=188.8
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
+|+++|+++.|.. ..+.+.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.+||+++..
T Consensus 4 ~l~~~nl~~~y~~----~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~i~~~~~ 77 (648)
T PRK10535 4 LLELKDIRRSYPS----GEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDK--PTSGTYRVAGQDVATLDA 77 (648)
T ss_pred EEEEeeEEEEeCC----CCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEcCcCCH
Confidence 6999999999831 1123579999999999999999999999999999999999643 568999999998752
Q ss_pred -h----ccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhH
Q 008534 226 -S----LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGE 300 (562)
Q Consensus 226 -~----~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGq 300 (562)
. .++.++|++|++.+|+++|+.||+.+..... .....+.++++.++++.+||.+..++. +..|||||
T Consensus 78 ~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~lgl~~~~~~~-----~~~LS~Gq 149 (648)
T PRK10535 78 DALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYA---GLERKQRLLRAQELLQRLGLEDRVEYQ-----PSQLSGGQ 149 (648)
T ss_pred HHHHHHHhccEEEEeCCcccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhhhcCC-----cccCCHHH
Confidence 1 1467999999999999999999999865332 223445566788999999998766654 46899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecCh
Q 008534 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 380 (562)
Q Consensus 301 rqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~ 380 (562)
+||++|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|+|++||++.. ...||++++|++|++++.|++
T Consensus 150 ~qrv~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~~--~~~~d~i~~l~~G~i~~~g~~ 227 (648)
T PRK10535 150 QQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQV--AAQAERVIEIRDGEIVRNPPA 227 (648)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHHH--HHhCCEEEEEECCEEEeecCc
Confidence 999999999999999999999999999999999999999998779999999999753 467999999999999999999
Q ss_pred HHHH
Q 008534 381 SEAM 384 (562)
Q Consensus 381 ~el~ 384 (562)
++..
T Consensus 228 ~~~~ 231 (648)
T PRK10535 228 QEKV 231 (648)
T ss_pred cccc
Confidence 8764
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-39 Score=355.01 Aligned_cols=211 Identities=27% Similarity=0.445 Sum_probs=173.4
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhcc
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~ 228 (562)
+|+++||+++| +++++|+|+||+|++||+++|+|||||||||||++|+|.+. +.+|+|.++|.
T Consensus 1 ml~i~~ls~~~--------~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~--p~~G~i~~~~~------- 63 (530)
T PRK15064 1 MLSTANITMQF--------GAKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLE--PSAGNVSLDPN------- 63 (530)
T ss_pred CEEEEEEEEEe--------CCcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEecCC-------
Confidence 37899999998 24579999999999999999999999999999999999653 45899999873
Q ss_pred CcEEEEccCCCCCCCCCHHHHHHHHHh-h-----------CCCCC-----------------ccHHHHHHHHHHHHHHcC
Q 008534 229 SKIGFVTQDDVLFPHLTVKETLTYAAL-L-----------RLPNT-----------------LTKQQKEKRAIDVINELG 279 (562)
Q Consensus 229 ~~igyV~Q~~~l~~~lTV~enl~~~~~-~-----------~~~~~-----------------~~~~~~~~~v~~~l~~lg 279 (562)
..||||+|++.+++.+||+||+.++.. . ..+.. ....+.+.++.++++.+|
T Consensus 64 ~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g 143 (530)
T PRK15064 64 ERLGKLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVG 143 (530)
T ss_pred CEEEEEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCC
Confidence 359999999999999999999987531 0 00000 000122356788999999
Q ss_pred CCccccccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHH
Q 008534 280 LERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRL 359 (562)
Q Consensus 280 L~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i 359 (562)
|.+..+. ..+..|||||||||+|||||+.+|+||||||||++||+.++..+.+.|++ .|.|||+|||++. .+
T Consensus 144 l~~~~~~----~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~~~tiiivsHd~~-~~ 215 (530)
T PRK15064 144 IPEEQHY----GLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE---RNSTMIIISHDRH-FL 215 (530)
T ss_pred CChhHhc----CchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh---CCCeEEEEeCCHH-HH
Confidence 9753321 23468999999999999999999999999999999999999999999863 5899999999975 47
Q ss_pred HhcCCEEEEEcCCeE-EEecChHHHH
Q 008534 360 FHKFDKLILLGKGSL-LYFGKASEAM 384 (562)
Q Consensus 360 ~~~~D~i~vL~~G~i-v~~G~~~el~ 384 (562)
.+.||+|++|++|++ ++.|++++.+
T Consensus 216 ~~~~d~i~~l~~g~i~~~~g~~~~~~ 241 (530)
T PRK15064 216 NSVCTHMADLDYGELRVYPGNYDEYM 241 (530)
T ss_pred HhhcceEEEEeCCEEEEecCCHHHHH
Confidence 789999999999999 5899887664
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-40 Score=404.72 Aligned_cols=206 Identities=24% Similarity=0.383 Sum_probs=171.3
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCc-cEEEECCEeCChhc
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVG-GSITYNDHPYSKSL 227 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~-G~I~i~G~~~~~~~ 227 (562)
.++++|++|.|+. ..++++|+|+||+|++|++++|+||||||||||+++|.|.+. +.+ |+|.+
T Consensus 614 ~I~~~nvsf~y~~-----~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~--~~~GG~I~l--------- 677 (1622)
T PLN03130 614 AISIKNGYFSWDS-----KAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELP--PRSDASVVI--------- 677 (1622)
T ss_pred ceEEEeeEEEccC-----CCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhc--cCCCceEEE---------
Confidence 5999999999831 124679999999999999999999999999999999999543 457 89974
Q ss_pred cCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHc-------CCCccccccccCcccCCCChhH
Q 008534 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINEL-------GLERCQDTMIGGSFVRGVSGGE 300 (562)
Q Consensus 228 ~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~l-------gL~~~~~t~vg~~~~~~LSGGq 300 (562)
+.+|+||+|+|.+|+ .||+|||.|+.. .+++ +.+++++.. .|+++.+|.+|++. ..|||||
T Consensus 678 ~~~Iayv~Q~p~Lfn-gTIreNI~fg~~------~d~e----~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G-~~LSGGQ 745 (1622)
T PLN03130 678 RGTVAYVPQVSWIFN-ATVRDNILFGSP------FDPE----RYERAIDVTALQHDLDLLPGGDLTEIGERG-VNISGGQ 745 (1622)
T ss_pred cCeEEEEcCccccCC-CCHHHHHhCCCc------ccHH----HHHHHHHHhCcHHHHHhCCCcccccccCCC-CCCCHHH
Confidence 457999999999997 599999999742 1222 233333322 35778899998764 5699999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecC
Q 008534 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQ-MLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (562)
Q Consensus 301 rqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~-~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (562)
||||+|||||+++|+|||||||||+||+.++..+++ .++.+. +++|+|++||++. ....||+|++|++|++++.|+
T Consensus 746 KQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l-~~kTvIlVTH~l~--~l~~aD~Ii~L~~G~i~e~Gt 822 (1622)
T PLN03130 746 KQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDEL-RGKTRVLVTNQLH--FLSQVDRIILVHEGMIKEEGT 822 (1622)
T ss_pred HHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHh-cCCEEEEEECCHh--HHHhCCEEEEEeCCEEEEeCC
Confidence 999999999999999999999999999999998865 555554 5899999999985 467899999999999999999
Q ss_pred hHHHHH
Q 008534 380 ASEAMA 385 (562)
Q Consensus 380 ~~el~~ 385 (562)
++++++
T Consensus 823 ~~eL~~ 828 (1622)
T PLN03130 823 YEELSN 828 (1622)
T ss_pred HHHHHh
Confidence 999864
|
|
| >cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=302.48 Aligned_cols=164 Identities=29% Similarity=0.524 Sum_probs=143.6
Q ss_pred EEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhccC
Q 008534 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKS 229 (562)
Q Consensus 150 l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~~ 229 (562)
|+++|++++|. ..+++|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|. +
T Consensus 1 i~~~~~~~~~~-------~~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~~~-------~ 64 (166)
T cd03223 1 IELENLSLATP-------DGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWP--WGSGRIGMPEG-------E 64 (166)
T ss_pred CEEEEEEEEcC-------CCCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCC-------c
Confidence 46899999872 13569999999999999999999999999999999999543 56899999873 5
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHH
Q 008534 230 KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNE 309 (562)
Q Consensus 230 ~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAra 309 (562)
.++|++|++.++ .+||+||+.+. .+..||||||||++||||
T Consensus 65 ~i~~~~q~~~~~-~~tv~~nl~~~--------------------------------------~~~~LS~G~~~rv~lara 105 (166)
T cd03223 65 DLLFLPQRPYLP-LGTLREQLIYP--------------------------------------WDDVLSGGEQQRLAFARL 105 (166)
T ss_pred eEEEECCCCccc-cccHHHHhhcc--------------------------------------CCCCCCHHHHHHHHHHHH
Confidence 799999998876 47999998752 125799999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCe
Q 008534 310 IIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGS 373 (562)
Q Consensus 310 Ll~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~ 373 (562)
|+.+|++|||||||++||+.++..+.+.|+++ ++|+|++||++. ....||++++|++|-
T Consensus 106 l~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsh~~~--~~~~~d~i~~l~~~~ 164 (166)
T cd03223 106 LLHKPKFVFLDEATSALDEESEDRLYQLLKEL---GITVISVGHRPS--LWKFHDRVLDLDGEG 164 (166)
T ss_pred HHcCCCEEEEECCccccCHHHHHHHHHHHHHh---CCEEEEEeCChh--HHhhCCEEEEEcCCC
Confidence 99999999999999999999999999999876 589999999975 347899999998763
|
The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt |
| >COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-40 Score=305.73 Aligned_cols=194 Identities=28% Similarity=0.490 Sum_probs=169.2
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCC----hhccCcEEEEccCCCCCCC
Q 008534 168 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS----KSLKSKIGFVTQDDVLFPH 243 (562)
Q Consensus 168 ~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~----~~~~~~igyV~Q~~~l~~~ 243 (562)
.+.++|+|+||++.+||.++|.||||||||||+|+++. +. ++++|.+++.|++++ +.+|.+|+||.|.|.||++
T Consensus 14 ~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~-Li-sp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~ 91 (223)
T COG4619 14 GDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVAS-LI-SPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGD 91 (223)
T ss_pred CCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHh-cc-CCCCceEEEcCccccccChHHHHHHHHHHHcCcccccc
Confidence 46789999999999999999999999999999999996 44 356899999999986 3689999999999999986
Q ss_pred CCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEeCCC
Q 008534 244 LTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPT 323 (562)
Q Consensus 244 lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPT 323 (562)
||++|+.|....+-.+ .+.+++.++++++++++.. .++.+..||||||||++|+|.|..-|+||+|||||
T Consensus 92 -tVeDNlifP~~~r~rr-----~dr~aa~~llar~~l~~~~----L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~T 161 (223)
T COG4619 92 -TVEDNLIFPWQIRNRR-----PDRAAALDLLARFALPDSI----LTKNITELSGGEKQRIALIRNLQFMPKILLLDEIT 161 (223)
T ss_pred -chhhccccchHHhccC-----CChHHHHHHHHHcCCchhh----hcchhhhccchHHHHHHHHHHhhcCCceEEecCch
Confidence 9999999987665221 1345677899999997643 23456789999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHH-HCCcEEEEEecCCChHHHhcCCEEEEEcCCeE
Q 008534 324 SGLDSTTALRIVQMLQDIA-EAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374 (562)
Q Consensus 324 sgLD~~~~~~i~~~L~~l~-~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~i 374 (562)
|+||+.+++.|-++|.++. .+...++.|||++.. ..+.||+++-+..|++
T Consensus 162 sALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dq-a~rha~k~itl~~G~~ 212 (223)
T COG4619 162 SALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQ-AIRHADKVITLQPGHA 212 (223)
T ss_pred hhcChhhHHHHHHHHHHHhhhhceEEEEEecChHH-HhhhhheEEEeccCcc
Confidence 9999999999999999996 568999999999764 5689999999999876
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=354.49 Aligned_cols=210 Identities=28% Similarity=0.384 Sum_probs=172.4
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhc
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~ 227 (562)
++|+++||++.|. .++++|+||||+|++|++++|+|||||||||||++|+|.+. +.+|+|.+++.
T Consensus 5 ~~l~i~~l~~~y~-------~~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~--p~~G~i~~~~~------ 69 (556)
T PRK11819 5 YIYTMNRVSKVVP-------PKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDK--EFEGEARPAPG------ 69 (556)
T ss_pred EEEEEeeEEEEeC-------CCCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEecCC------
Confidence 3799999999981 14679999999999999999999999999999999999653 56899999752
Q ss_pred cCcEEEEccCCCCCCCCCHHHHHHHHHhh---------------CCCC-CccH-----------------HHHHHHHHHH
Q 008534 228 KSKIGFVTQDDVLFPHLTVKETLTYAALL---------------RLPN-TLTK-----------------QQKEKRAIDV 274 (562)
Q Consensus 228 ~~~igyV~Q~~~l~~~lTV~enl~~~~~~---------------~~~~-~~~~-----------------~~~~~~v~~~ 274 (562)
..||||+|++.+++.+||.||+.++... ..+. .... .+...++.++
T Consensus 70 -~~i~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (556)
T PRK11819 70 -IKVGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIA 148 (556)
T ss_pred -CEEEEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHH
Confidence 4699999999999999999999875310 0000 0000 0113467788
Q ss_pred HHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecC
Q 008534 275 INELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQ 354 (562)
Q Consensus 275 l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~ 354 (562)
++.+||+. .+. .+.+|||||||||+|||||+.+|++|||||||++||+.+...+.+.|+++. .|||++||+
T Consensus 149 l~~~gl~~-~~~-----~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~---~tviiisHd 219 (556)
T PRK11819 149 MDALRCPP-WDA-----KVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYP---GTVVAVTHD 219 (556)
T ss_pred HHhCCCCc-ccC-----chhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCC---CeEEEEeCC
Confidence 89999953 444 356899999999999999999999999999999999999999999999863 599999999
Q ss_pred CChHHHhcCCEEEEEcCCeEE-EecChHHH
Q 008534 355 PSSRLFHKFDKLILLGKGSLL-YFGKASEA 383 (562)
Q Consensus 355 ~~~~i~~~~D~i~vL~~G~iv-~~G~~~el 383 (562)
+. .+...||+|++|++|+++ +.|+.++.
T Consensus 220 ~~-~~~~~~d~i~~l~~g~i~~~~g~~~~~ 248 (556)
T PRK11819 220 RY-FLDNVAGWILELDRGRGIPWEGNYSSW 248 (556)
T ss_pred HH-HHHhhcCeEEEEeCCEEEEecCCHHHH
Confidence 75 467889999999999986 88887754
|
|
| >COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-38 Score=303.22 Aligned_cols=231 Identities=29% Similarity=0.401 Sum_probs=197.7
Q ss_pred eEEEEeEEEEEeecccCCccc-cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh--
Q 008534 149 YLKFTDVTYKVILKGMTSSEE-KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~-~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~-- 225 (562)
+|+++|++++. .+ +.||++||++|++||+.+||||||||||||.++|+|+-....++|+|+++|+++..
T Consensus 3 ~L~I~dLhv~v--------~~~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~ 74 (251)
T COG0396 3 MLEIKDLHVEV--------EGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELS 74 (251)
T ss_pred eeEEeeeEEEe--------cCchhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCC
Confidence 68999999987 24 58999999999999999999999999999999999964222468999999999852
Q ss_pred ---hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCc-cccccccCcccCCCChhHH
Q 008534 226 ---SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVRGVSGGER 301 (562)
Q Consensus 226 ---~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~t~vg~~~~~~LSGGqr 301 (562)
..|.-|...+|.|.=+|..++.+.|..+...+....-...+....+.+.++.+++++ ..++.+. .++|||||
T Consensus 75 ~~ERAr~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN----~GFSGGEk 150 (251)
T COG0396 75 PDERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVN----EGFSGGEK 150 (251)
T ss_pred HhHHHhcCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccC----CCcCcchH
Confidence 456778999999999999999999998875532211012355667888999999986 4555443 57999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcC--CEEEEEcCCeEEEecC
Q 008534 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKF--DKLILLGKGSLLYFGK 379 (562)
Q Consensus 302 qRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~--D~i~vL~~G~iv~~G~ 379 (562)
||..|+..++.+|++.|||||-||||..+-..|-+.+..+...|.++++|||.. .+..+. |+|.||.+|+|+..|.
T Consensus 151 KR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~--rll~~i~pD~vhvl~~GrIv~sG~ 228 (251)
T COG0396 151 KRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQ--RLLDYIKPDKVHVLYDGRIVKSGD 228 (251)
T ss_pred HHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHH--HHHhhcCCCEEEEEECCEEEecCC
Confidence 999999999999999999999999999999999999999998999999999984 466665 9999999999999999
Q ss_pred hHHHHHHHHhcCCCC
Q 008534 380 ASEAMAYFSSIGCSP 394 (562)
Q Consensus 380 ~~el~~~f~~~g~~~ 394 (562)
+ ++..+++.-||.|
T Consensus 229 ~-el~~~le~~gy~~ 242 (251)
T COG0396 229 P-ELAEELEEKGYDW 242 (251)
T ss_pred H-HHHHHHHHhchHH
Confidence 9 9999999988854
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-38 Score=348.51 Aligned_cols=216 Identities=19% Similarity=0.367 Sum_probs=175.4
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh--
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~-- 225 (562)
..|+++|+++.+ +.+|+||||+|++||+++|+||||||||||+++|+|... +.+|+|.++|+++..
T Consensus 249 ~~i~~~~l~~~~----------~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~ 316 (491)
T PRK10982 249 VILEVRNLTSLR----------QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIRE--KSAGTITLHGKKINNHN 316 (491)
T ss_pred cEEEEeCccccc----------CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCc--CCccEEEECCEECCCCC
Confidence 369999998852 259999999999999999999999999999999999553 568999999988742
Q ss_pred ---hccCcEEEEccCC---CCCCCCCHHHHHHHHHh--hCCCCC-ccHHHHHHHHHHHHHHcCCC-ccccccccCcccCC
Q 008534 226 ---SLKSKIGFVTQDD---VLFPHLTVKETLTYAAL--LRLPNT-LTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRG 295 (562)
Q Consensus 226 ---~~~~~igyV~Q~~---~l~~~lTV~enl~~~~~--~~~~~~-~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~~ 295 (562)
..++.++|++|++ .+|+.+|+.+|+.+... ...... ......++.+.++++.+++. +..++ .+.+
T Consensus 317 ~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~~ 391 (491)
T PRK10982 317 ANEAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRT-----QIGS 391 (491)
T ss_pred HHHHHHCCCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCccc-----cccc
Confidence 2356699999985 47888898887433210 000001 12233445678889999985 33454 4578
Q ss_pred CChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEE
Q 008534 296 VSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLL 375 (562)
Q Consensus 296 LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv 375 (562)
|||||||||+|||+|+.+|+||||||||+|||+.++..+++.|+++.+.|.|||++||++. .+..+||++++|++|+++
T Consensus 392 LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~-~~~~~~d~v~~l~~g~i~ 470 (491)
T PRK10982 392 LSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMP-ELLGITDRILVMSNGLVA 470 (491)
T ss_pred CCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChH-HHHhhCCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999999999999888999999999975 477899999999999999
Q ss_pred EecChH
Q 008534 376 YFGKAS 381 (562)
Q Consensus 376 ~~G~~~ 381 (562)
..++.+
T Consensus 471 ~~~~~~ 476 (491)
T PRK10982 471 GIVDTK 476 (491)
T ss_pred EEEccc
Confidence 877553
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-38 Score=347.71 Aligned_cols=215 Identities=21% Similarity=0.374 Sum_probs=171.9
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh--
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~-- 225 (562)
..|+++|+++.| +++.+|+|+||+|++||+++|+||||||||||+++|+|.. .++.+|+|.++|+++..
T Consensus 259 ~~l~~~~l~~~~--------~~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~-~~~~~G~i~~~g~~~~~~~ 329 (490)
T PRK10938 259 PRIVLNNGVVSY--------NDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDH-PQGYSNDLTLFGRRRGSGE 329 (490)
T ss_pred ceEEEeceEEEE--------CCeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCC-CcccCCeEEEecccCCCCC
Confidence 369999999998 2356999999999999999999999999999999999953 22258999999986521
Q ss_pred ---hccCcEEEEccCCCCCC--CCCHHHHHHHHHhh--CCCCCccHHHHHHHHHHHHHHcCCCc-cccccccCcccCCCC
Q 008534 226 ---SLKSKIGFVTQDDVLFP--HLTVKETLTYAALL--RLPNTLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVRGVS 297 (562)
Q Consensus 226 ---~~~~~igyV~Q~~~l~~--~lTV~enl~~~~~~--~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~t~vg~~~~~~LS 297 (562)
..++.|+||+|++.++. ..++++++.++... ....... ...++++.++++.++|.+ ..++. +.+||
T Consensus 330 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LS 403 (490)
T PRK10938 330 TIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVS-DRQQKLAQQWLDILGIDKRTADAP-----FHSLS 403 (490)
T ss_pred CHHHHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCC-HHHHHHHHHHHHHcCCchhhccCc-----hhhCC
Confidence 23567999999976543 24777776544211 0001111 223456888999999986 55554 46899
Q ss_pred hhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCC-cEEEEEecCCChHHHh-cCCEEEEEcCCeEE
Q 008534 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAG-KTVVTTIHQPSSRLFH-KFDKLILLGKGSLL 375 (562)
Q Consensus 298 GGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g-~Tvii~tH~~~~~i~~-~~D~i~vL~~G~iv 375 (562)
|||||||+|||||+.+|+||||||||+|||+.++..+.+.|+++++++ .|||++||++.. +.+ +||++++|++|+++
T Consensus 404 gGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~-~~~~~~d~v~~l~~G~i~ 482 (490)
T PRK10938 404 WGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAED-APACITHRLEFVPDGDIY 482 (490)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhh-hhhhhheeEEEecCCceE
Confidence 999999999999999999999999999999999999999999998765 479999999764 555 58999999999988
Q ss_pred Eec
Q 008534 376 YFG 378 (562)
Q Consensus 376 ~~G 378 (562)
+.-
T Consensus 483 ~~~ 485 (490)
T PRK10938 483 RYV 485 (490)
T ss_pred Eee
Confidence 754
|
|
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-40 Score=370.35 Aligned_cols=340 Identities=16% Similarity=0.161 Sum_probs=218.8
Q ss_pred hHHHHHHHHHHHHHHHHhhcCCCccccccccCCCCcchhhhhhhhhhhcCCCcccccccceeeeeeccccc-cccccc-c
Q 008534 8 TSLARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQL-KLELDE-V 85 (562)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~ 85 (562)
.++.++.++..++..+..+|.....++|++|+++..+.+++.+..........+.......+......... -..+.. +
T Consensus 264 ~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 343 (659)
T TIGR00954 264 GKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVEHLNLIIKFRFSYGFLDNIVAKYTWSAVGLV 343 (659)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 56778889999999999999999999999999999999999887766654433211111111000000000 001111 1
Q ss_pred cchhhhhh-h----hhhhhhhhcc-cccC-------CCC------------ccccccCCCCCCCCCcccccccc----CC
Q 008534 86 SSGAALSR-A----SSASLGLSFS-FTGF-------TMP------------PDEIADSKPFSDDDIPEDIEAGT----RE 136 (562)
Q Consensus 86 ~~g~~~~~-~----~~~~~g~~~~-~~~~-------~~~------------~~~~~~~~~~~~~~~~~~~~~~~----~~ 136 (562)
..|+.... . +..+.|.+.+ |..+ ..| .......+.+...+...++.... ..
T Consensus 344 ~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~i~~~~~~~~Ri~~ll~~~~~~~~~~~~~~~~ 423 (659)
T TIGR00954 344 AVSIPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRDMTRLAGFTARVDTLLQVLDDVKSGNFKRPRV 423 (659)
T ss_pred HHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccc
Confidence 12221111 1 2333333222 1111 001 11111112222221111111000 00
Q ss_pred CC-----------C----CCCCCCCceeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHH
Q 008534 137 RP-----------K----FQTEPTLPIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLN 201 (562)
Q Consensus 137 ~~-----------~----~~~~~~~~~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~ 201 (562)
.. . ..........|+++||++.|+ .++++|+|+||+|++||+++|+||||||||||++
T Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~-------~~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~ 496 (659)
T TIGR00954 424 EEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTP-------NGDVLIESLSFEVPSGNHLLICGPNGCGKSSLFR 496 (659)
T ss_pred ccccccccccccccccccccccccCCCeEEEEeeEEECC-------CCCeeeecceEEECCCCEEEEECCCCCCHHHHHH
Confidence 00 0 000011123699999999872 1347999999999999999999999999999999
Q ss_pred HHHcCCCCCCCccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCC
Q 008534 202 LLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE 281 (562)
Q Consensus 202 ~L~G~l~~~~~~G~I~i~G~~~~~~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~ 281 (562)
+|+|. + ++.+|+|.+++ +++++||+|++.+++. |++||+.++....... .....++++.++++.+++.
T Consensus 497 lL~Gl-~-~~~~G~i~~~~-------~~~i~~v~Q~~~l~~~-tv~eni~~~~~~~~~~--~~~~~~~~i~~~l~~~~l~ 564 (659)
T TIGR00954 497 ILGEL-W-PVYGGRLTKPA-------KGKLFYVPQRPYMTLG-TLRDQIIYPDSSEDMK--RRGLSDKDLEQILDNVQLT 564 (659)
T ss_pred HHhCC-C-CCCCCeEeecC-------CCcEEEECCCCCCCCc-CHHHHHhcCCChhhhh--ccCCCHHHHHHHHHHcCCH
Confidence 99995 4 35589998864 4679999999999986 9999999864211000 0001134567788888887
Q ss_pred cccccccc----CcccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCCh
Q 008534 282 RCQDTMIG----GSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSS 357 (562)
Q Consensus 282 ~~~~t~vg----~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~ 357 (562)
+..++..| ......||||||||++|||||+++|++|||||||++||+.++..+.+.+++ .|+|+|+++|+++.
T Consensus 565 ~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~---~~~tvI~isH~~~~ 641 (659)
T TIGR00954 565 HILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCRE---FGITLFSVSHRKSL 641 (659)
T ss_pred HHHhhcCCcccccccccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHH---cCCEEEEEeCchHH
Confidence 64433211 113468999999999999999999999999999999999999999998876 38999999999864
Q ss_pred HHHhcCCEEEEEcC
Q 008534 358 RLFHKFDKLILLGK 371 (562)
Q Consensus 358 ~i~~~~D~i~vL~~ 371 (562)
.+.||++++|++
T Consensus 642 --~~~~d~il~l~~ 653 (659)
T TIGR00954 642 --WKYHEYLLYMDG 653 (659)
T ss_pred --HHhCCEEEEEeC
Confidence 578999999963
|
|
| >PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-38 Score=310.61 Aligned_cols=195 Identities=21% Similarity=0.218 Sum_probs=158.9
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEE-ECCEeCChhccCcEEEEccCCCCCCCCCHHHH
Q 008534 171 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSIT-YNDHPYSKSLKSKIGFVTQDDVLFPHLTVKET 249 (562)
Q Consensus 171 ~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~-i~G~~~~~~~~~~igyV~Q~~~l~~~lTV~en 249 (562)
.+|+||||+|++|++++|+||||||||||+++|+|... +.+|+|. ++|..+ .+.+++.+++.+|++||
T Consensus 1 ~vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~--~~sG~i~~~~~~~~---------~~~~~~~l~~~ltv~en 69 (213)
T PRK15177 1 VVLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDA--PDEGDFIGLRGDAL---------PLGANSFILPGLTGEEN 69 (213)
T ss_pred CeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcc--CCCCCEEEecCcee---------ccccccccCCcCcHHHH
Confidence 37999999999999999999999999999999999543 5689997 777543 13356778899999999
Q ss_pred HHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 008534 250 LTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDST 329 (562)
Q Consensus 250 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~ 329 (562)
+.+...... ....+.. ..+.+.++|++..++. ++.||||||||++|||||+.+|+++||||||++||+.
T Consensus 70 l~~~~~~~~---~~~~~~~---~~~~~~~~l~~~~~~~-----~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~ 138 (213)
T PRK15177 70 ARMMASLYG---LDGDEFS---HFCYQLTQLEQCYTDR-----VSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNA 138 (213)
T ss_pred HHHHHHHcC---CCHHHHH---HHHHHHhChhHHhhch-----HhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHH
Confidence 998765321 2222221 2333456777666654 4689999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHHHHHHh
Q 008534 330 TALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSS 389 (562)
Q Consensus 330 ~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~~~f~~ 389 (562)
++..+.+.|.+..+ ++|+|++||++. .+..+||++++|++|++++.|+.+++..+++.
T Consensus 139 ~~~~~~~~l~~~~~-~~~ii~vsH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~ 196 (213)
T PRK15177 139 TQLRMQAALACQLQ-QKGLIVLTHNPR-LIKEHCHAFGVLLHGKITMCEDLAQATALFEQ 196 (213)
T ss_pred HHHHHHHHHHHHhh-CCcEEEEECCHH-HHHHhcCeeEEEECCeEEEeCCHHHHHHHHHH
Confidence 99999998866543 578999999976 46678999999999999999999999877654
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-38 Score=349.59 Aligned_cols=204 Identities=23% Similarity=0.366 Sum_probs=171.5
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhc
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~ 227 (562)
..|+++||++.| +++.+|+|+||+|++|++++|+||||||||||+++|+|.+. +.+|+|.++|.
T Consensus 318 ~~l~~~~l~~~~--------~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~--p~~G~i~~~~~------ 381 (530)
T PRK15064 318 NALEVENLTKGF--------DNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELE--PDSGTVKWSEN------ 381 (530)
T ss_pred ceEEEEeeEEee--------CCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCc------
Confidence 369999999998 24569999999999999999999999999999999999543 55899999873
Q ss_pred cCcEEEEccCCC--CCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCC-ccccccccCcccCCCChhHHHHH
Q 008534 228 KSKIGFVTQDDV--LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVSGGERKRV 304 (562)
Q Consensus 228 ~~~igyV~Q~~~--l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~~LSGGqrqRv 304 (562)
+.+|||+|++. +++.+||+||+.+.. .. . ..++++.++++.+++. +..+. .+.+|||||||||
T Consensus 382 -~~i~~~~q~~~~~~~~~~t~~~~~~~~~---~~-~----~~~~~~~~~l~~~~l~~~~~~~-----~~~~LSgGq~qrv 447 (530)
T PRK15064 382 -ANIGYYAQDHAYDFENDLTLFDWMSQWR---QE-G----DDEQAVRGTLGRLLFSQDDIKK-----SVKVLSGGEKGRM 447 (530)
T ss_pred -eEEEEEcccccccCCCCCcHHHHHHHhc---cC-C----ccHHHHHHHHHHcCCChhHhcC-----cccccCHHHHHHH
Confidence 46999999964 566789999987521 11 0 1234577889999984 44454 4578999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEE-EecChHHH
Q 008534 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLL-YFGKASEA 383 (562)
Q Consensus 305 ~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv-~~G~~~el 383 (562)
+|||+|+.+|+||||||||+|||+.++..+.+.|+++ +.|||++||++. .+..+||+|++|++|+++ +.|+++++
T Consensus 448 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~-~~~~~~d~i~~l~~g~i~~~~g~~~~~ 523 (530)
T PRK15064 448 LFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY---EGTLIFVSHDRE-FVSSLATRIIEITPDGVVDFSGTYEEY 523 (530)
T ss_pred HHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC---CCEEEEEeCCHH-HHHHhCCEEEEEECCeEEEcCCCHHHH
Confidence 9999999999999999999999999999999999876 359999999975 467789999999999998 88988776
Q ss_pred HH
Q 008534 384 MA 385 (562)
Q Consensus 384 ~~ 385 (562)
++
T Consensus 524 ~~ 525 (530)
T PRK15064 524 LR 525 (530)
T ss_pred HH
Confidence 43
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-38 Score=350.49 Aligned_cols=210 Identities=27% Similarity=0.371 Sum_probs=170.2
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhcc
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~ 228 (562)
+++++||+++|. .++++|+|+||+|++|++++|+|||||||||||++|+|... +.+|+|.+++ +
T Consensus 4 ~i~~~nls~~~~-------~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~--p~~G~i~~~~-------~ 67 (552)
T TIGR03719 4 IYTMNRVSKVVP-------PKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDK--EFNGEARPAP-------G 67 (552)
T ss_pred EEEEeeEEEecC-------CCCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEecC-------C
Confidence 699999999981 13579999999999999999999999999999999999643 4689999975 2
Q ss_pred CcEEEEccCCCCCCCCCHHHHHHHHHhh-CC-----------CCCccHH---------------------HHHHHHHHHH
Q 008534 229 SKIGFVTQDDVLFPHLTVKETLTYAALL-RL-----------PNTLTKQ---------------------QKEKRAIDVI 275 (562)
Q Consensus 229 ~~igyV~Q~~~l~~~lTV~enl~~~~~~-~~-----------~~~~~~~---------------------~~~~~v~~~l 275 (562)
..||||+|++.+++.+||+||+.++... +. ......+ ....++.+++
T Consensus 68 ~~i~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 147 (552)
T TIGR03719 68 IKVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAM 147 (552)
T ss_pred CEEEEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHH
Confidence 4699999999999999999999875321 00 0000000 0123456677
Q ss_pred HHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCC
Q 008534 276 NELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQP 355 (562)
Q Consensus 276 ~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~ 355 (562)
+.+|++. .++ .+..|||||||||+|||||+.+|++|||||||++||+.++..+.+.|+++ +.|||+|||++
T Consensus 148 ~~~~l~~-~~~-----~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~---~~tvIiisHd~ 218 (552)
T TIGR03719 148 DALRCPP-WDA-----DVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY---PGTVVAVTHDR 218 (552)
T ss_pred hhCCCCc-ccC-----chhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC---CCeEEEEeCCH
Confidence 7788853 343 35689999999999999999999999999999999999999999999875 35999999997
Q ss_pred ChHHHhcCCEEEEEcCCeEE-EecChHHHH
Q 008534 356 SSRLFHKFDKLILLGKGSLL-YFGKASEAM 384 (562)
Q Consensus 356 ~~~i~~~~D~i~vL~~G~iv-~~G~~~el~ 384 (562)
. .+...||+|++|++|+++ +.|+.++..
T Consensus 219 ~-~~~~~~d~v~~l~~g~i~~~~g~~~~~~ 247 (552)
T TIGR03719 219 Y-FLDNVAGWILELDRGRGIPWEGNYSSWL 247 (552)
T ss_pred H-HHHhhcCeEEEEECCEEEEecCCHHHHH
Confidence 5 467789999999999976 789887643
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-38 Score=311.17 Aligned_cols=216 Identities=28% Similarity=0.481 Sum_probs=182.3
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCC---
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS--- 224 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~--- 224 (562)
..|+++||++.| .+++||+|+|++|+|||-.+|+|||||||||||++++|.. ++.+|.+.+.|++..
T Consensus 30 ~li~l~~v~v~r--------~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~--~pssg~~~~~G~~~G~~~ 99 (257)
T COG1119 30 PLIELKNVSVRR--------NGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEH--PPSSGDVTLLGRRFGKGE 99 (257)
T ss_pred ceEEecceEEEE--------CCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhccc--CCCCCceeeeeeeccCCc
Confidence 469999999998 4789999999999999999999999999999999999943 455899999999864
Q ss_pred --hhccCcEEEEccC--CCCCCCCCHHHHHHHHHh--hCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCCh
Q 008534 225 --KSLKSKIGFVTQD--DVLFPHLTVKETLTYAAL--LRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSG 298 (562)
Q Consensus 225 --~~~~~~igyV~Q~--~~l~~~lTV~enl~~~~~--~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSG 298 (562)
.++|++||||.-. ..+.+..+|+|-+.-+.. .........++..+++..+++.+|+.+..|..+ ..||-
T Consensus 100 ~~~elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~-----~~LS~ 174 (257)
T COG1119 100 TIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPF-----GSLSQ 174 (257)
T ss_pred chHHHHHHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCch-----hhcCH
Confidence 3578999999743 334556788888764322 111111234556678889999999998887754 58999
Q ss_pred hHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC--CcEEEEEecCCChHHHhcCCEEEEEcCCeEEE
Q 008534 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA--GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (562)
Q Consensus 299 GqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~--g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~ 376 (562)
||||||-|||||+.+|++|||||||+|||...+..+++.|.+++.. +.++|+|||+.. ++...++++++|++|++++
T Consensus 175 Ge~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~e-Ei~~~~th~lll~~g~v~~ 253 (257)
T COG1119 175 GEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAE-EIPPCFTHRLLLKEGEVVA 253 (257)
T ss_pred hHHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchh-hcccccceEEEeeCCceee
Confidence 9999999999999999999999999999999999999999999865 789999999965 5778899999999999999
Q ss_pred ecC
Q 008534 377 FGK 379 (562)
Q Consensus 377 ~G~ 379 (562)
+|.
T Consensus 254 ~g~ 256 (257)
T COG1119 254 QGK 256 (257)
T ss_pred ccc
Confidence 884
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-37 Score=321.25 Aligned_cols=227 Identities=25% Similarity=0.454 Sum_probs=195.2
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC---CccEEEECCEeCC-
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPT---VGGSITYNDHPYS- 224 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~---~~G~I~i~G~~~~- 224 (562)
.|+++|++..|.. ..+...++++|||.|++||.+||||.||||||-..+.|+|.+..+. -+|+|.|+|.++-
T Consensus 6 lL~v~nLsV~f~~----~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~ 81 (534)
T COG4172 6 LLSIRNLSVAFHQ----EGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLA 81 (534)
T ss_pred ceeeeccEEEEec----CCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhc
Confidence 6899999998843 2356789999999999999999999999999999999998776532 4799999999873
Q ss_pred ---hh---cc-CcEEEEccCCC--CCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCC
Q 008534 225 ---KS---LK-SKIGFVTQDDV--LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRG 295 (562)
Q Consensus 225 ---~~---~~-~~igyV~Q~~~--l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~ 295 (562)
+. +| .+|+++||+|. |-|-.|+..-|.-...+. .++++++.++++.++++.+|+++....+ +.++++
T Consensus 82 ~se~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~H--rg~~~~~Ar~r~lelL~~VgI~~p~~rl--~~yPHe 157 (534)
T COG4172 82 ASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLH--RGLSRAAARARALELLELVGIPEPEKRL--DAYPHE 157 (534)
T ss_pred CCHHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHH--hcccHHHHHHHHHHHHHHcCCCchhhhh--hhCCcc
Confidence 12 23 46999999984 677678888877665543 3567888889999999999998765442 578999
Q ss_pred CChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeE
Q 008534 296 VSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374 (562)
Q Consensus 296 LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~i 374 (562)
|||||||||.||.||+.+|++||.||||++||...+.+|++.|++|.++ |..+++||||+.- +-+++|||+||.+|++
T Consensus 158 LSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~i-Vr~~ADrV~VM~~G~i 236 (534)
T COG4172 158 LSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGI-VRKFADRVYVMQHGEI 236 (534)
T ss_pred cCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHH-HHHhhhhEEEEeccEE
Confidence 9999999999999999999999999999999999999999999999754 9999999999864 6788999999999999
Q ss_pred EEecChHHHH
Q 008534 375 LYFGKASEAM 384 (562)
Q Consensus 375 v~~G~~~el~ 384 (562)
++.|+.+++.
T Consensus 237 vE~~~t~~lF 246 (534)
T COG4172 237 VETGTTETLF 246 (534)
T ss_pred eecCcHHHHh
Confidence 9999988875
|
|
| >cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=312.98 Aligned_cols=190 Identities=25% Similarity=0.305 Sum_probs=154.7
Q ss_pred ceeeceEEEEe-----CCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEccCCCCCCCCC
Q 008534 171 DILNGITGSVN-----PGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLT 245 (562)
Q Consensus 171 ~iL~~vs~~i~-----~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~~~igyV~Q~~~l~~~lT 245 (562)
..++|++++++ +||+++|+||||||||||+++|+|.+. +.+|+|.++|. .|+|++|++..++.+|
T Consensus 8 ~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~--p~~G~i~~~g~--------~i~~~~q~~~~~~~~t 77 (246)
T cd03237 8 KTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLK--PDEGDIEIELD--------TVSYKPQYIKADYEGT 77 (246)
T ss_pred cccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCc--CCCCeEEECCc--------eEEEecccccCCCCCC
Confidence 36777777776 799999999999999999999999543 56899999985 5999999988766789
Q ss_pred HHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 008534 246 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSG 325 (562)
Q Consensus 246 V~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsg 325 (562)
|+||+.+...... . ....+.++++.++|.+..++. +..|||||||||+|||||+.+|++|||||||++
T Consensus 78 v~e~l~~~~~~~~----~---~~~~~~~~l~~l~l~~~~~~~-----~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~ 145 (246)
T cd03237 78 VRDLLSSITKDFY----T---HPYFKTEIAKPLQIEQILDRE-----VPELSGGELQRVAIAACLSKDADIYLLDEPSAY 145 (246)
T ss_pred HHHHHHHHhhhcc----c---cHHHHHHHHHHcCCHHHhhCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 9999976532110 0 112356788899998766654 468999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEE--EecChHHH
Q 008534 326 LDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLL--YFGKASEA 383 (562)
Q Consensus 326 LD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv--~~G~~~el 383 (562)
||+.++..+.+.|++++++ |+|||++||++. .+..+||+|++|+++..+ ..+++.++
T Consensus 146 LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~-~~~~~~d~i~~l~~~~~~~~~~~~~~~~ 205 (246)
T cd03237 146 LDVEQRLMASKVIRRFAENNEKTAFVVEHDII-MIDYLADRLIVFEGEPSVNGVANPPQSL 205 (246)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEcCCCeeEEEeCCchHH
Confidence 9999999999999999754 899999999975 466789999999764333 44455554
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=310.14 Aligned_cols=193 Identities=26% Similarity=0.448 Sum_probs=164.4
Q ss_pred eEEEEeEEEEEeeccc-CCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhc
Q 008534 149 YLKFTDVTYKVILKGM-TSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~-~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~ 227 (562)
.++++|+++.|..+.. .......+++||||+|++||+++|||+||||||||-|+|.|+ .+ +++|+|+++|+++....
T Consensus 4 ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L-~~-pt~G~i~f~g~~i~~~~ 81 (268)
T COG4608 4 LLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGL-EE-PTSGEILFEGKDITKLS 81 (268)
T ss_pred eEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcC-cC-CCCceEEEcCcchhhcc
Confidence 6899999999865321 111124799999999999999999999999999999999974 44 45899999999864321
Q ss_pred cCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHH
Q 008534 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (562)
Q Consensus 228 ~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA 307 (562)
+++..+++.++|+.+||+.. ..++++++||||||||++||
T Consensus 82 ------------------------------------~~~~~~~v~elL~~Vgl~~~----~~~ryPhelSGGQrQRi~IA 121 (268)
T COG4608 82 ------------------------------------KEERRERVLELLEKVGLPEE----FLYRYPHELSGGQRQRIGIA 121 (268)
T ss_pred ------------------------------------hhHHHHHHHHHHHHhCCCHH----HhhcCCcccCchhhhhHHHH
Confidence 23455678999999998642 22457899999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHH
Q 008534 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (562)
Q Consensus 308 raLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~ 384 (562)
|||+.+|+++++|||||+||...+.+++++|+++.++ |.|.++|+||++. +..+||||.||..|+||+.|+.+++.
T Consensus 122 RALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~v-v~~isdri~VMy~G~iVE~g~~~~~~ 198 (268)
T COG4608 122 RALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSV-VRYISDRIAVMYLGKIVEIGPTEEVF 198 (268)
T ss_pred HHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHh-hhhhcccEEEEecCceeEecCHHHHh
Confidence 9999999999999999999999999999999999765 9999999999764 77899999999999999999999885
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-37 Score=343.12 Aligned_cols=205 Identities=22% Similarity=0.370 Sum_probs=168.3
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhc
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~ 227 (562)
..|+++||++.| +++.+|+||||+|++||+++|+||||||||||+++|+|.+. +.+|+|.+++.
T Consensus 323 ~~l~~~~l~~~~--------~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~--p~~G~i~~~~~------ 386 (556)
T PRK11819 323 KVIEAENLSKSF--------GDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQ--PDSGTIKIGET------ 386 (556)
T ss_pred eEEEEEeEEEEE--------CCeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCc------
Confidence 479999999998 24579999999999999999999999999999999999653 56899999542
Q ss_pred cCcEEEEccCC-CCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCc-cccccccCcccCCCChhHHHHHH
Q 008534 228 KSKIGFVTQDD-VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVRGVSGGERKRVC 305 (562)
Q Consensus 228 ~~~igyV~Q~~-~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~t~vg~~~~~~LSGGqrqRv~ 305 (562)
..||||+|++ .+++.+||+||+.++..... .... +..+.++++.+++.+ ..+. .+.+|||||||||+
T Consensus 387 -~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~---~~~~--~~~~~~~l~~~~l~~~~~~~-----~~~~LSgG~~qrv~ 455 (556)
T PRK11819 387 -VKLAYVDQSRDALDPNKTVWEEISGGLDIIK---VGNR--EIPSRAYVGRFNFKGGDQQK-----KVGVLSGGERNRLH 455 (556)
T ss_pred -eEEEEEeCchhhcCCCCCHHHHHHhhccccc---cccc--HHHHHHHHHhCCCChhHhcC-----chhhCCHHHHHHHH
Confidence 1599999996 78888999999998643211 1111 123456889999963 3454 35689999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcC-CeEE-EecChHHH
Q 008534 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK-GSLL-YFGKASEA 383 (562)
Q Consensus 306 IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~-G~iv-~~G~~~el 383 (562)
|||||+.+|+||||||||+|||+.++..+.+.|+++. | |||++||++. .+..+||+|++|++ |+++ +.|+.++.
T Consensus 456 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~-tvi~vtHd~~-~~~~~~d~i~~l~~~g~~~~~~g~~~~~ 531 (556)
T PRK11819 456 LAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEFP--G-CAVVISHDRW-FLDRIATHILAFEGDSQVEWFEGNFQEY 531 (556)
T ss_pred HHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCC--C-eEEEEECCHH-HHHHhCCEEEEEECCCeEEEecCCHHHH
Confidence 9999999999999999999999999999999999873 4 8999999975 47788999999986 7876 56766554
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-37 Score=340.61 Aligned_cols=205 Identities=25% Similarity=0.390 Sum_probs=167.9
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhc
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~ 227 (562)
..|+++||++.| +++.+|+||||+|++|++++|+||||||||||+++|+|.+. +.+|+|.+++.
T Consensus 321 ~~l~~~~l~~~~--------~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~--p~~G~i~~~~~------ 384 (552)
T TIGR03719 321 KVIEAENLSKGF--------GDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQ--PDSGTIKIGET------ 384 (552)
T ss_pred eEEEEeeEEEEE--------CCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCeEEEECCc------
Confidence 369999999998 24579999999999999999999999999999999999653 56899999542
Q ss_pred cCcEEEEccCC-CCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCc-cccccccCcccCCCChhHHHHHH
Q 008534 228 KSKIGFVTQDD-VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVRGVSGGERKRVC 305 (562)
Q Consensus 228 ~~~igyV~Q~~-~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~t~vg~~~~~~LSGGqrqRv~ 305 (562)
..||||+|++ .+++.+||.||+.++.... ..... +.++.++++.+++.+ ..+.. +..|||||||||+
T Consensus 385 -~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~--~~~~~~~l~~~~l~~~~~~~~-----~~~LSgGe~qrv~ 453 (552)
T TIGR03719 385 -VKLAYVDQSRDALDPNKTVWEEISGGLDII---QLGKR--EVPSRAYVGRFNFKGSDQQKK-----VGQLSGGERNRVH 453 (552)
T ss_pred -eEEEEEeCCccccCCCCcHHHHHHhhcccc---ccCcc--hHHHHHHHHhCCCChhHhcCc-----hhhCCHHHHHHHH
Confidence 1599999996 4788899999999864321 11111 223557889999963 34543 4689999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcC-CeEE-EecChHHH
Q 008534 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK-GSLL-YFGKASEA 383 (562)
Q Consensus 306 IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~-G~iv-~~G~~~el 383 (562)
|||+|+.+|+||||||||+|||+.++..+.+.|+++. + |||++||++. .+..+||+|++|++ |+++ +.|+.++.
T Consensus 454 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~-~viivsHd~~-~~~~~~d~i~~l~~~~~~~~~~g~~~~~ 529 (552)
T TIGR03719 454 LAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFA--G-CAVVISHDRW-FLDRIATHILAFEGDSHVEWFEGNYSEY 529 (552)
T ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC--C-eEEEEeCCHH-HHHHhCCEEEEEECCCeEEEeCCCHHHH
Confidence 9999999999999999999999999999999999873 4 8999999975 46788999999986 5876 56766543
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-37 Score=291.58 Aligned_cols=220 Identities=27% Similarity=0.441 Sum_probs=189.4
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECC-EeCCh-
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYND-HPYSK- 225 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G-~~~~~- 225 (562)
..|+++||+.++ ++..+|+++||++.+||+-+|+|||||||||++++|+|.. ++..|+++++| .++++
T Consensus 4 ~iL~~~~vsVsF--------~GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKt--rp~~G~v~f~g~~dl~~~ 73 (249)
T COG4674 4 IILYLDGVSVSF--------GGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKT--RPQEGEVLFDGDTDLTKL 73 (249)
T ss_pred ceEEEeceEEEE--------cceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccC--CCCcceEEEcCchhhccC
Confidence 468999999998 4678999999999999999999999999999999999953 46689999999 77753
Q ss_pred ----hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCC-----CccHHHHHHHHHHHHHHcCCCccccccccCcccCCC
Q 008534 226 ----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPN-----TLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGV 296 (562)
Q Consensus 226 ----~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~-----~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~L 296 (562)
..|..||--||.|..|+.+||+|||.++.....+- .....+.+.+++++|...||.+..+..- ..|
T Consensus 74 ~e~~IAr~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A-----~~L 148 (249)
T COG4674 74 PEHRIARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLA-----ALL 148 (249)
T ss_pred CHHHHHHhccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhh-----hhh
Confidence 24667999999999999999999999986432110 0113345568999999999998887653 479
Q ss_pred ChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEE
Q 008534 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (562)
Q Consensus 297 SGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~ 376 (562)
|-||||++.|++-|+.+|++|+||||++|+--....+.-++|+.++. +++|+++.||+.. +..++|+|-||++|.+..
T Consensus 149 SHGqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~-~hsilVVEHDM~F-vr~~A~~VTVlh~G~VL~ 226 (249)
T COG4674 149 SHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAG-KHSILVVEHDMGF-VREIADKVTVLHEGSVLA 226 (249)
T ss_pred ccchhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhc-CceEEEEeccHHH-HHHhhheeEEEeccceee
Confidence 99999999999999999999999999999988888999999999985 6899999999764 778999999999999999
Q ss_pred ecChHHHH
Q 008534 377 FGKASEAM 384 (562)
Q Consensus 377 ~G~~~el~ 384 (562)
.|+.+++.
T Consensus 227 EGsld~v~ 234 (249)
T COG4674 227 EGSLDEVQ 234 (249)
T ss_pred cccHHHhh
Confidence 99998874
|
|
| >COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-37 Score=305.52 Aligned_cols=208 Identities=27% Similarity=0.422 Sum_probs=180.1
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---hccCcEEEEc-cCCCCCCCCC
Q 008534 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---SLKSKIGFVT-QDDVLFPHLT 245 (562)
Q Consensus 170 ~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~---~~~~~igyV~-Q~~~l~~~lT 245 (562)
..+++||||+|++|++++++|||||||||+||+|+|.+. |++|.|.++|.+.-+ .+-+++++|+ |-..+...+.
T Consensus 37 ~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~--p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp 114 (325)
T COG4586 37 IEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLL--PTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLP 114 (325)
T ss_pred hhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccc--cCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeech
Confidence 469999999999999999999999999999999999765 568999999986532 3446688776 4456666677
Q ss_pred HHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 008534 246 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSG 325 (562)
Q Consensus 246 V~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsg 325 (562)
+.|.+......+ .++.....++...+.+.++|+...+.. ++.||-|||.|+.||.+|+++|+||||||||-|
T Consensus 115 ~~ds~~v~~~Iy---~Ipd~~F~~r~~~l~eiLdl~~~lk~~-----vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvg 186 (325)
T COG4586 115 ALDSLEVLKLIY---EIPDDEFAERLDFLTEILDLEGFLKWP-----VRKLSLGQRMRAELAAALLHPPKVLFLDEPTVG 186 (325)
T ss_pred hhhhHHHHHHHH---hCCHHHHHHHHHHHHHHhcchhhhhhh-----hhhccchHHHHHHHHHHhcCCCcEEEecCCccC
Confidence 888887654443 466778888999999999998776654 588999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHH-CCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHHHHHH
Q 008534 326 LDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFS 388 (562)
Q Consensus 326 LD~~~~~~i~~~L~~l~~-~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~~~f~ 388 (562)
||..++..|.+.|++..+ .+.||+++||+++. +..+||||++|+.|+++|.|+.+++.+.|.
T Consensus 187 LDV~aq~~ir~Flke~n~~~~aTVllTTH~~~d-i~~lc~rv~~I~~Gqlv~dg~l~~l~~~f~ 249 (325)
T COG4586 187 LDVNAQANIREFLKEYNEERQATVLLTTHIFDD-IATLCDRVLLIDQGQLVFDGTLAQLQEQFG 249 (325)
T ss_pred cchhHHHHHHHHHHHHHHhhCceEEEEecchhh-HHHhhhheEEeeCCcEeecccHHHHHHHhC
Confidence 999999999999999965 48999999999875 889999999999999999999999987764
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=339.69 Aligned_cols=197 Identities=29% Similarity=0.366 Sum_probs=168.3
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhc
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~ 227 (562)
..++++|+++.|. + ..|+++||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++
T Consensus 339 ~~l~~~~ls~~~~--------~-~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~--p~~G~I~~~-------- 399 (590)
T PRK13409 339 TLVEYPDLTKKLG--------D-FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLK--PDEGEVDPE-------- 399 (590)
T ss_pred eEEEEcceEEEEC--------C-EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEEe--------
Confidence 4699999999881 2 35999999999999999999999999999999999653 568999986
Q ss_pred cCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHH
Q 008534 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (562)
Q Consensus 228 ~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA 307 (562)
..|+|++|++.+++.+||+||+.++... ... ...+.++++.++|.+..++. +.+|||||||||+||
T Consensus 400 -~~i~y~~Q~~~~~~~~tv~e~l~~~~~~-----~~~---~~~~~~~L~~l~l~~~~~~~-----~~~LSGGe~QRvaiA 465 (590)
T PRK13409 400 -LKISYKPQYIKPDYDGTVEDLLRSITDD-----LGS---SYYKSEIIKPLQLERLLDKN-----VKDLSGGELQRVAIA 465 (590)
T ss_pred -eeEEEecccccCCCCCcHHHHHHHHhhh-----cCh---HHHHHHHHHHCCCHHHHhCC-----cccCCHHHHHHHHHH
Confidence 1599999998888889999999875321 111 12467889999998766654 568999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecC
Q 008534 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (562)
Q Consensus 308 raLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (562)
|||+.+|+||||||||+|||+.++..+.+.|++++++ |+|||++|||+. .+..+||+|++|+ |++...|.
T Consensus 466 raL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~-~~~~~aDrvivl~-~~~~~~g~ 536 (590)
T PRK13409 466 ACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIY-MIDYISDRLMVFE-GEPGKHGH 536 (590)
T ss_pred HHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEc-Ccceeeee
Confidence 9999999999999999999999999999999999764 899999999975 4677899999996 58887776
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=365.65 Aligned_cols=334 Identities=22% Similarity=0.297 Sum_probs=226.5
Q ss_pred hcCCCccccccccCCCCcchhhhhhhhhhhcCCCcccccccceeeeeeccccccccccccc--chhhhh---h----hhh
Q 008534 26 FKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVS--SGAALS---R----ASS 96 (562)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~---~----~~~ 96 (562)
.|++....|||||+.+..-.+++..++..-.+.-+. .... .|-+...++++... ..+++. . .++
T Consensus 1001 ~Etl~GlsTIRAf~~~~rf~~~~~~~~D~~~~~~f~-~~~a------~RWla~Rle~ig~~~v~~~al~~vl~~~~~~~~ 1073 (1381)
T KOG0054|consen 1001 SETLQGLSTIRAFGKEERFIQENDELIDENSRAFFL-SISA------NRWLAVRLELLGNLVVLIAALFAVLLPSGLISP 1073 (1381)
T ss_pred HHHhcCcceeeeccccHHHHHHHHHHhhhhHHHHHH-HHHH------HHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCc
Confidence 456677789999999999999998888665443221 0111 12223344544211 111111 0 111
Q ss_pred hhhhhhcccccCCC--------Ccc-----ccccCCCCCCCCCccccccccCCCCC--CCCCCCCceeEEEEeEEEEEee
Q 008534 97 ASLGLSFSFTGFTM--------PPD-----EIADSKPFSDDDIPEDIEAGTRERPK--FQTEPTLPIYLKFTDVTYKVIL 161 (562)
Q Consensus 97 ~~~g~~~~~~~~~~--------~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~nvs~~y~~ 161 (562)
-..|...+++.--. ... .++-.|...+.+++++ ++.+.+. +...-+..+.|+|+|++.+|.
T Consensus 1074 g~vGLslsyal~lt~~l~~~vR~~~elEn~m~SVERv~eY~~~~~E---~p~~~~~~~pp~~WP~~G~I~f~~~~~RYr- 1149 (1381)
T KOG0054|consen 1074 GLVGLSLSYALQLTGLLQWLVRQSSELENNMVSVERVLEYTDIPSE---APLEIEESRPPPSWPSKGEIEFEDLSLRYR- 1149 (1381)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHhcCCCC---CCCCCcCCCCCCCCCCCCeEEEEEeEEEeC-
Confidence 23334333332100 011 1111233334333332 1111111 111112235799999999993
Q ss_pred cccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh----hccCcEEEEccC
Q 008534 162 KGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQD 237 (562)
Q Consensus 162 ~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~----~~~~~igyV~Q~ 237 (562)
.+...|||||||+|+|||.+||||..|||||||+++|- |+.++ .+|+|.|||.++.+ .+|++++.+|||
T Consensus 1150 -----p~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLF-Rl~e~-~~G~I~IDgvdI~~igL~dLRsrlsIIPQd 1222 (1381)
T KOG0054|consen 1150 -----PNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALF-RLVEP-AEGEILIDGVDISKIGLHDLRSRLSIIPQD 1222 (1381)
T ss_pred -----CCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHH-HhcCc-cCCeEEEcCeecccccHHHHHhcCeeeCCC
Confidence 23568999999999999999999999999999999999 56554 58999999999974 689999999999
Q ss_pred CCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCEE
Q 008534 238 DVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLL 317 (562)
Q Consensus 238 ~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iL 317 (562)
|.+|.+ |||.||.-.... ..+.+.++-.+....+.++ .++...|+.|.+. ..++|-||||-++|||||+++++||
T Consensus 1223 PvLFsG-TvR~NLDPf~e~-sD~~IW~ALe~~~Lk~~v~--~~p~~Ld~~v~eg-G~N~SvGQRQLlCLARALLr~skIL 1297 (1381)
T KOG0054|consen 1223 PVLFSG-TVRFNLDPFDEY-SDDEIWEALERCQLKDVVS--SLPGGLDSEVSEG-GENFSVGQRQLLCLARALLRKSKIL 1297 (1381)
T ss_pred CceecC-ccccccCccccc-CHHHHHHHHHHhChHHHHh--hCCcCCCceecCC-CccCChHHHHHHHHHHHHhccCCEE
Confidence 999985 999999732110 0011111112222333333 3345567776543 4679999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHHH
Q 008534 318 FLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (562)
Q Consensus 318 lLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~~ 385 (562)
+|||+|+++|+.+-..|.+.|++-- +++|||.|.|++.+ + -.+|||+||++|+++++|+|.++++
T Consensus 1298 vLDEATAsVD~~TD~lIQ~tIR~~F-~dcTVltIAHRl~T-V-md~DrVlVld~G~v~EfdsP~~Ll~ 1362 (1381)
T KOG0054|consen 1298 VLDEATASVDPETDALIQKTIREEF-KDCTVLTIAHRLNT-V-MDSDRVLVLDAGRVVEFDSPAELLS 1362 (1381)
T ss_pred EEecccccCChHHHHHHHHHHHHHh-cCCeEEEEeeccch-h-hhcCeEEEeeCCeEeecCChHHHHh
Confidence 9999999999999999999999854 37999999999987 4 3599999999999999999999974
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-36 Score=342.11 Aligned_cols=203 Identities=29% Similarity=0.439 Sum_probs=169.1
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhc
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~ 227 (562)
..|+++||++.| +++.+|+|+||+|++|++++|+|||||||||||++|+|.+. +++|+|.+++.
T Consensus 311 ~~l~~~~l~~~y--------~~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~--p~~G~i~~~~~------ 374 (638)
T PRK10636 311 PLLKMEKVSAGY--------GDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELA--PVSGEIGLAKG------ 374 (638)
T ss_pred ceEEEEeeEEEe--------CCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEEECCC------
Confidence 369999999998 24579999999999999999999999999999999999653 56899999742
Q ss_pred cCcEEEEccCC--CCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCc-cccccccCcccCCCChhHHHHH
Q 008534 228 KSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVRGVSGGERKRV 304 (562)
Q Consensus 228 ~~~igyV~Q~~--~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~t~vg~~~~~~LSGGqrqRv 304 (562)
..|||++|+. .+.+..|+.+++... . ......++.++++.+++.. ..++. +..|||||||||
T Consensus 375 -~~igy~~Q~~~~~l~~~~~~~~~~~~~---~------~~~~~~~~~~~L~~~~l~~~~~~~~-----~~~LSgGekqRl 439 (638)
T PRK10636 375 -IKLGYFAQHQLEFLRADESPLQHLARL---A------PQELEQKLRDYLGGFGFQGDKVTEE-----TRRFSGGEKARL 439 (638)
T ss_pred -EEEEEecCcchhhCCccchHHHHHHHh---C------chhhHHHHHHHHHHcCCChhHhcCc-----hhhCCHHHHHHH
Confidence 2599999974 355667888876421 0 1122456788999999963 45544 468999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEE-EecChHHH
Q 008534 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLL-YFGKASEA 383 (562)
Q Consensus 305 ~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv-~~G~~~el 383 (562)
+|||+|+.+|+||||||||+|||+.+...+.+.|+++ .| |||+||||+. .+..+||+|++|++|+++ +.|+.++.
T Consensus 440 ~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~g-tvi~vSHd~~-~~~~~~d~i~~l~~G~i~~~~g~~~~~ 515 (638)
T PRK10636 440 VLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF--EG-ALVVVSHDRH-LLRSTTDDLYLVHDGKVEPFDGDLEDY 515 (638)
T ss_pred HHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CC-eEEEEeCCHH-HHHHhCCEEEEEECCEEEEcCCCHHHH
Confidence 9999999999999999999999999999999999987 34 9999999975 477899999999999997 88998876
Q ss_pred HH
Q 008534 384 MA 385 (562)
Q Consensus 384 ~~ 385 (562)
.+
T Consensus 516 ~~ 517 (638)
T PRK10636 516 QQ 517 (638)
T ss_pred HH
Confidence 43
|
|
| >cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=307.65 Aligned_cols=199 Identities=26% Similarity=0.368 Sum_probs=162.7
Q ss_pred eEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEE-----------ECCEe
Q 008534 154 DVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSIT-----------YNDHP 222 (562)
Q Consensus 154 nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~-----------i~G~~ 222 (562)
||+++|. ..+.+|+|+| .+++||+++|+||||||||||+++|+|.+. +++|+|. ++|.+
T Consensus 5 ~~~~~y~-------~~~~~l~~i~-~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~--p~~G~I~~~~~~~~~~~~~~g~~ 74 (255)
T cd03236 5 EPVHRYG-------PNSFKLHRLP-VPREGQVLGLVGPNGIGKSTALKILAGKLK--PNLGKFDDPPDWDEILDEFRGSE 74 (255)
T ss_pred Ccceeec-------CcchhhhcCC-CCCCCCEEEEECCCCCCHHHHHHHHhCCcC--CCCceEeeccccchhhhhccCch
Confidence 5777772 1236999999 599999999999999999999999999643 5589996 88887
Q ss_pred CCh---hcc---CcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCC
Q 008534 223 YSK---SLK---SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGV 296 (562)
Q Consensus 223 ~~~---~~~---~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~L 296 (562)
+.. ..+ ..++|++|+..+++. ++.+++.+.. .....+..+.++++.+||.+..+.. +..|
T Consensus 75 ~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~i~~~l--------~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~L 140 (255)
T cd03236 75 LQNYFTKLLEGDVKVIVKPQYVDLIPK-AVKGKVGELL--------KKKDERGKLDELVDQLELRHVLDRN-----IDQL 140 (255)
T ss_pred hhhhhHHhhhcccceeeecchhccCch-HHHHHHHHHh--------chhHHHHHHHHHHHHcCCchhhcCC-----hhhC
Confidence 642 111 247999999888884 8888887642 1122345678899999998765543 4689
Q ss_pred ChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEE
Q 008534 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (562)
Q Consensus 297 SGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~ 376 (562)
|||||||++|||+|+.+|+++||||||++||+.++..+.+.|++++++++|||++||++. .+..+||+|++| +|++++
T Consensus 141 S~G~~qrv~laral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~-~~~~~ad~i~~l-~~~~~~ 218 (255)
T cd03236 141 SGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLA-VLDYLSDYIHCL-YGEPGA 218 (255)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEE-CCCCCc
Confidence 999999999999999999999999999999999999999999999877899999999975 466689999999 566766
Q ss_pred ec
Q 008534 377 FG 378 (562)
Q Consensus 377 ~G 378 (562)
.|
T Consensus 219 ~~ 220 (255)
T cd03236 219 YG 220 (255)
T ss_pred ce
Confidence 54
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-36 Score=289.46 Aligned_cols=204 Identities=28% Similarity=0.417 Sum_probs=167.9
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChh---cc-CcEEEEccCCC--CC
Q 008534 168 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS---LK-SKIGFVTQDDV--LF 241 (562)
Q Consensus 168 ~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~---~~-~~igyV~Q~~~--l~ 241 (562)
.++++|+++|++|..|+++.|+|.||||||||+++|+|.+. +++|+|.+||.++++. .| ..++-|+|||. .+
T Consensus 17 ~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~--~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~ 94 (263)
T COG1101 17 LEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLK--PTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTA 94 (263)
T ss_pred hHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccc--cCCceEEECceecccCCHHHHhhHHHHHhcchhhCCc
Confidence 46789999999999999999999999999999999999764 5699999999999742 12 34788999985 69
Q ss_pred CCCCHHHHHHHHHhhCCCCCccHH---HHHHHHHHHHHHc--CCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCE
Q 008534 242 PHLTVKETLTYAALLRLPNTLTKQ---QKEKRAIDVINEL--GLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSL 316 (562)
Q Consensus 242 ~~lTV~enl~~~~~~~~~~~~~~~---~~~~~v~~~l~~l--gL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~i 316 (562)
+.|||.||+.++......++++.. .+.+...+-++.+ ||++..++.+| -|||||||-|+++.|-++.|+|
T Consensus 95 ~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~ig-----lLSGGQRQalsL~MAtl~~pki 169 (263)
T COG1101 95 PELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIG-----LLSGGQRQALSLLMATLHPPKI 169 (263)
T ss_pred ccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhh-----hccchHHHHHHHHHHhcCCCcE
Confidence 999999999988653222223322 2223333444444 66777777664 6999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecC
Q 008534 317 LFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (562)
Q Consensus 317 LlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (562)
|+|||-|++|||.++..|++.-.++.++ +.|.+||||.+.. ...+-+|.++|++|+||.+=+
T Consensus 170 LLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~-Al~yG~RlImLh~G~IvlDv~ 232 (263)
T COG1101 170 LLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMED-ALDYGNRLIMLHSGKIVLDVT 232 (263)
T ss_pred EEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHH-HHhhCCeEEEEeCCeEEEEcc
Confidence 9999999999999999999999998654 7899999999765 678999999999999998643
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-36 Score=337.31 Aligned_cols=205 Identities=26% Similarity=0.437 Sum_probs=168.2
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhc
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~ 227 (562)
..|+++||++.| +++++|+||||+|++|++++|+|||||||||||++|+|.+. +.+|+|.+ |.++
T Consensus 318 ~~l~~~~l~~~~--------~~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~--p~~G~i~~-~~~~---- 382 (635)
T PRK11147 318 IVFEMENVNYQI--------DGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQ--ADSGRIHC-GTKL---- 382 (635)
T ss_pred ceEEEeeeEEEE--------CCeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCcEEEE-CCCc----
Confidence 369999999998 24579999999999999999999999999999999999653 56899998 4332
Q ss_pred cCcEEEEccCC-CCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCC-ccccccccCcccCCCChhHHHHHH
Q 008534 228 KSKIGFVTQDD-VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVSGGERKRVC 305 (562)
Q Consensus 228 ~~~igyV~Q~~-~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~~LSGGqrqRv~ 305 (562)
.|||++|++ .+++.+||.||+.++.... ... .....+.+++..+++. +..++. +..|||||||||+
T Consensus 383 --~i~y~~q~~~~l~~~~tv~e~l~~~~~~~---~~~--~~~~~~~~~l~~~~l~~~~~~~~-----~~~LSgGekqRl~ 450 (635)
T PRK11147 383 --EVAYFDQHRAELDPEKTVMDNLAEGKQEV---MVN--GRPRHVLGYLQDFLFHPKRAMTP-----VKALSGGERNRLL 450 (635)
T ss_pred --EEEEEeCcccccCCCCCHHHHHHhhcccc---ccc--chHHHHHHHHHhcCCCHHHHhCh-----hhhCCHHHHHHHH
Confidence 599999985 5888999999998753211 011 1134577889999985 344544 4689999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEc-CCeEEE-ecChHHH
Q 008534 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG-KGSLLY-FGKASEA 383 (562)
Q Consensus 306 IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~-~G~iv~-~G~~~el 383 (562)
|||+|+.+|+||||||||+|||+.+...+.+.|+++ +.|||+|||+.. .+..+||+|++|+ +|+++. .|+.++-
T Consensus 451 la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vSHd~~-~~~~~~d~i~~l~~~g~i~~~~g~y~~y 526 (635)
T PRK11147 451 LARLFLKPSNLLILDEPTNDLDVETLELLEELLDSY---QGTVLLVSHDRQ-FVDNTVTECWIFEGNGKIGRYVGGYHDA 526 (635)
T ss_pred HHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC---CCeEEEEECCHH-HHHHhcCEEEEEeCCCeEEEccCCHHHH
Confidence 999999999999999999999999999999999876 459999999965 4678899999997 799854 5666554
|
|
| >cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-36 Score=276.48 Aligned_cols=144 Identities=33% Similarity=0.552 Sum_probs=130.1
Q ss_pred EEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhccC
Q 008534 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKS 229 (562)
Q Consensus 150 l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~~ 229 (562)
++++|+++.|. +.++|+++||++++||+++|+||||||||||+++|+|... +.+|+|.++|. +
T Consensus 1 l~~~~l~~~~~--------~~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~--~~~G~i~~~~~-------~ 63 (144)
T cd03221 1 IELENLSKTYG--------GKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELE--PDEGIVTWGST-------V 63 (144)
T ss_pred CEEEEEEEEEC--------CceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCC--CCceEEEECCe-------E
Confidence 46899999882 3469999999999999999999999999999999999543 56899999985 4
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHH
Q 008534 230 KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNE 309 (562)
Q Consensus 230 ~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAra 309 (562)
.++|++| ||+||+||++||||
T Consensus 64 ~i~~~~~-----------------------------------------------------------lS~G~~~rv~lara 84 (144)
T cd03221 64 KIGYFEQ-----------------------------------------------------------LSGGEKMRLALAKL 84 (144)
T ss_pred EEEEEcc-----------------------------------------------------------CCHHHHHHHHHHHH
Confidence 6899998 99999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCe
Q 008534 310 IIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGS 373 (562)
Q Consensus 310 Ll~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~ 373 (562)
|+.+|+++||||||+|||+.++..+.+.|+++ ++|+|++||++. .+...||++++|++|+
T Consensus 85 l~~~p~illlDEP~~~LD~~~~~~l~~~l~~~---~~til~~th~~~-~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 85 LLENPNLLLLDEPTNHLDLESIEALEEALKEY---PGTVILVSHDRY-FLDQVATKIIELEDGK 144 (144)
T ss_pred HhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc---CCEEEEEECCHH-HHHHhCCEEEEEeCCC
Confidence 99999999999999999999999999999886 479999999975 4667899999999985
|
EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. |
| >COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-35 Score=286.80 Aligned_cols=222 Identities=23% Similarity=0.319 Sum_probs=189.1
Q ss_pred eEEEEeEEEEEeecc----------------cCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCC
Q 008534 149 YLKFTDVTYKVILKG----------------MTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTV 212 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~----------------~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~ 212 (562)
.|+++||++.|.... ........+|+||||++++||.++|+|+||||||||||+|+|.+ . |+
T Consensus 3 ~I~~~~V~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~-~-Pt 80 (249)
T COG1134 3 VIKVSNVSKKFRIYHEKSYSLKKRLKGLAKGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIY-K-PT 80 (249)
T ss_pred EEEeeceeEEEecchhhhhhHHHHHHHHhcCCCCcceEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCcc-C-CC
Confidence 578889988876431 01123457999999999999999999999999999999999954 3 56
Q ss_pred ccEEEECCEeCChhccCcEEEEcc-CCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCc
Q 008534 213 GGSITYNDHPYSKSLKSKIGFVTQ-DDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGS 291 (562)
Q Consensus 213 ~G~I~i~G~~~~~~~~~~igyV~Q-~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~ 291 (562)
+|+|.++|+-. ++.. .--+-|.+|.+||+.+-..+. ++++++.+++++++++--+|.+..|.+
T Consensus 81 ~G~v~v~G~v~---------~li~lg~Gf~pelTGreNi~l~~~~~---G~~~~ei~~~~~eIieFaELG~fi~~P---- 144 (249)
T COG1134 81 SGKVKVTGKVA---------PLIELGAGFDPELTGRENIYLRGLIL---GLTRKEIDEKVDEIIEFAELGDFIDQP---- 144 (249)
T ss_pred CceEEEcceEe---------hhhhcccCCCcccchHHHHHHHHHHh---CccHHHHHHHHHHHHHHHHHHHHhhCc----
Confidence 89999999742 1111 112345799999999876543 467888999999999988999888875
Q ss_pred ccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcC
Q 008534 292 FVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK 371 (562)
Q Consensus 292 ~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~ 371 (562)
++.+|-||+-|+++|.|...+|+|||+||..+-.|+.-+++-.+.++++.++++|||++||++. .+.++||++++|++
T Consensus 145 -vktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~~~~tiv~VSHd~~-~I~~~Cd~~i~l~~ 222 (249)
T COG1134 145 -VKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIVLVSHDLG-AIKQYCDRAIWLEH 222 (249)
T ss_pred -hhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHHcCCEEEEEECCHH-HHHHhcCeeEEEeC
Confidence 4799999999999999999999999999999999999999999999999878899999999976 58899999999999
Q ss_pred CeEEEecChHHHHHHHHhc
Q 008534 372 GSLLYFGKASEAMAYFSSI 390 (562)
Q Consensus 372 G~iv~~G~~~el~~~f~~~ 390 (562)
|++++.|.+++++++|...
T Consensus 223 G~i~~~G~~~~vi~~Y~~~ 241 (249)
T COG1134 223 GQIRMEGSPEEVIPAYEED 241 (249)
T ss_pred CEEEEcCCHHHHHHHHHHh
Confidence 9999999999999998764
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=362.25 Aligned_cols=209 Identities=22% Similarity=0.400 Sum_probs=171.5
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhcc
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~ 228 (562)
.++++|++|.|. ...+++|+|+||+|++|++++|+||||||||||+++|+|.+. +.+|+|.++|
T Consensus 636 ~i~~~~~~~~~~------~~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~--~~~G~i~~~g-------- 699 (1522)
T TIGR00957 636 SITVHNATFTWA------RDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD--KVEGHVHMKG-------- 699 (1522)
T ss_pred cEEEEEeEEEcC------CCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc--cCCcEEEECC--------
Confidence 699999999982 123579999999999999999999999999999999999543 4689999987
Q ss_pred CcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHH---HHHHcC-CCccccccccCcccCCCChhHHHHH
Q 008534 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAID---VINELG-LERCQDTMIGGSFVRGVSGGERKRV 304 (562)
Q Consensus 229 ~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~---~l~~lg-L~~~~~t~vg~~~~~~LSGGqrqRv 304 (562)
.|+||+|++.+|+ .||+|||.|+.. ..++..+ ++.+ +.+.++ +++..+|.+|.. +.+|||||||||
T Consensus 700 -~i~yv~Q~~~l~~-~Ti~eNI~~g~~------~~~~~~~-~~~~~~~l~~~l~~~~~g~~t~ig~~-g~~LSGGQkqRi 769 (1522)
T TIGR00957 700 -SVAYVPQQAWIQN-DSLRENILFGKA------LNEKYYQ-QVLEACALLPDLEILPSGDRTEIGEK-GVNLSGGQKQRV 769 (1522)
T ss_pred -EEEEEcCCccccC-CcHHHHhhcCCc------cCHHHHH-HHHHHhCCHHHHHhcCCCCCceecCC-CCCCCHHHHHHH
Confidence 4999999999986 699999998632 1122211 1111 122232 355667888765 567999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH--HHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHH
Q 008534 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI--AEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (562)
Q Consensus 305 ~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l--~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~e 382 (562)
+|||||+.+|+|+|||||||+||+.++..+.+.+.+. ..+++|+|++||++.. ...||+|++|++|++++.|++++
T Consensus 770 aLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~--l~~~D~ii~l~~G~i~~~g~~~~ 847 (1522)
T TIGR00957 770 SLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISY--LPQVDVIIVMSGGKISEMGSYQE 847 (1522)
T ss_pred HHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhh--hhhCCEEEEecCCeEEeeCCHHH
Confidence 9999999999999999999999999999999999753 2347999999999864 45699999999999999999999
Q ss_pred HHH
Q 008534 383 AMA 385 (562)
Q Consensus 383 l~~ 385 (562)
+.+
T Consensus 848 l~~ 850 (1522)
T TIGR00957 848 LLQ 850 (1522)
T ss_pred HHh
Confidence 864
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=334.77 Aligned_cols=208 Identities=27% Similarity=0.435 Sum_probs=162.9
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhcc
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~ 228 (562)
+|+++||+++| +++.+|+||||+|++|+++||+||||||||||||+|+|.+. +++|+|.++|..
T Consensus 1 ~i~i~nls~~~--------g~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~--pd~G~I~~~~~~------ 64 (638)
T PRK10636 1 MIVFSSLQIRR--------GVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEIS--ADGGSYTFPGNW------ 64 (638)
T ss_pred CEEEEEEEEEe--------CCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEecCCC------
Confidence 37899999998 35679999999999999999999999999999999999543 568999998742
Q ss_pred CcEEEEccCCCCCCCCCHHHHHHHHHhh--CC----------C------------CCccHHHHHHHHHHHHHHcCCC-cc
Q 008534 229 SKIGFVTQDDVLFPHLTVKETLTYAALL--RL----------P------------NTLTKQQKEKRAIDVINELGLE-RC 283 (562)
Q Consensus 229 ~~igyV~Q~~~l~~~lTV~enl~~~~~~--~~----------~------------~~~~~~~~~~~v~~~l~~lgL~-~~ 283 (562)
.|+|++|++..+. .|+.+++.-.... .. . ........+.++.++++.+|+. +.
T Consensus 65 -~i~~~~q~~~~~~-~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~ 142 (638)
T PRK10636 65 -QLAWVNQETPALP-QPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQ 142 (638)
T ss_pred -EEEEEecCCCCCC-CCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchh
Confidence 3899998754443 4665554311000 00 0 0000012245678899999996 34
Q ss_pred ccccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcC
Q 008534 284 QDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKF 363 (562)
Q Consensus 284 ~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~ 363 (562)
.+.. +..|||||||||+||++|+.+|+||||||||++||+.+...+.+.|+++ +.|||+|||+.. .+...|
T Consensus 143 ~~~~-----~~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~---~~tviivsHd~~-~l~~~~ 213 (638)
T PRK10636 143 LERP-----VSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY---QGTLILISHDRD-FLDPIV 213 (638)
T ss_pred hcCc-----hhhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC---CCeEEEEeCCHH-HHHHhc
Confidence 5554 4689999999999999999999999999999999999999999998875 569999999965 467899
Q ss_pred CEEEEEcCCeEE-EecChHHH
Q 008534 364 DKLILLGKGSLL-YFGKASEA 383 (562)
Q Consensus 364 D~i~vL~~G~iv-~~G~~~el 383 (562)
|+|++|++|+++ +.|+.+..
T Consensus 214 d~i~~L~~G~i~~~~g~~~~~ 234 (638)
T PRK10636 214 DKIIHIEQQSLFEYTGNYSSF 234 (638)
T ss_pred CEEEEEeCCEEEEecCCHHHH
Confidence 999999999996 67876544
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-35 Score=334.57 Aligned_cols=207 Identities=21% Similarity=0.368 Sum_probs=165.9
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhc
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~ 227 (562)
..|+++||++.|. ..+.+|+|+||+|++|++++|+|||||||||||++|+|.+. +.+|+|.+++.
T Consensus 507 ~~L~~~~ls~~y~-------~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~--p~~G~I~~~~~------ 571 (718)
T PLN03073 507 PIISFSDASFGYP-------GGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQ--PSSGTVFRSAK------ 571 (718)
T ss_pred ceEEEEeeEEEeC-------CCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCceEEECCc------
Confidence 4799999999982 13469999999999999999999999999999999999653 56899998752
Q ss_pred cCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCc-cccccccCcccCCCChhHHHHHHH
Q 008534 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVRGVSGGERKRVCI 306 (562)
Q Consensus 228 ~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~t~vg~~~~~~LSGGqrqRv~I 306 (562)
..|||++|++. +.+++.+|..+......+ ... ++++.++++.+++.+ ..+. .+..|||||||||+|
T Consensus 572 -~~igyv~Q~~~--~~l~~~~~~~~~~~~~~~-~~~----~~~i~~~L~~~gl~~~~~~~-----~~~~LSgGqkqRvaL 638 (718)
T PLN03073 572 -VRMAVFSQHHV--DGLDLSSNPLLYMMRCFP-GVP----EQKLRAHLGSFGVTGNLALQ-----PMYTLSGGQKSRVAF 638 (718)
T ss_pred -eeEEEEecccc--ccCCcchhHHHHHHHhcC-CCC----HHHHHHHHHHCCCChHHhcC-----CccccCHHHHHHHHH
Confidence 36999999863 345676665432211111 111 345778899999973 3443 357899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEE-EecChHHHHH
Q 008534 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLL-YFGKASEAMA 385 (562)
Q Consensus 307 AraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv-~~G~~~el~~ 385 (562)
||+|+.+|++|||||||+|||+.+...+++.|++. .| |||++||++. .+..+||++++|++|+++ +.|+.++..+
T Consensus 639 AraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~--~g-tvIivSHd~~-~i~~~~drv~~l~~G~i~~~~g~~~~~~~ 714 (718)
T PLN03073 639 AKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLF--QG-GVLMVSHDEH-LISGSVDELWVVSEGKVTPFHGTFHDYKK 714 (718)
T ss_pred HHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CC-EEEEEECCHH-HHHHhCCEEEEEECCEEEEeCCCHHHHHH
Confidence 99999999999999999999999999999888765 34 9999999975 467789999999999998 7888876544
Q ss_pred H
Q 008534 386 Y 386 (562)
Q Consensus 386 ~ 386 (562)
+
T Consensus 715 ~ 715 (718)
T PLN03073 715 T 715 (718)
T ss_pred H
Confidence 3
|
|
| >COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-35 Score=270.79 Aligned_cols=192 Identities=30% Similarity=0.488 Sum_probs=166.1
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC-CCccEEEECCEeCCh--
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP-TVGGSITYNDHPYSK-- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~-~~~G~I~i~G~~~~~-- 225 (562)
++.++||+.+. ++.-.|-|||++|.+||++-||||||||||||+..+.|.+... ..+|++++|++.+..
T Consensus 2 ~l~l~nvsl~l--------~g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lP 73 (213)
T COG4136 2 MLCLKNVSLRL--------PGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLP 73 (213)
T ss_pred ceeeeeeeecC--------CCceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccc
Confidence 47789998754 3667999999999999999999999999999999999976432 468999999998863
Q ss_pred hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHH
Q 008534 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC 305 (562)
Q Consensus 226 ~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ 305 (562)
..+++||++|||+.+||+++|.+||.|+. |..+..+.++..+...+++.||....+. .+.+||||||-||+
T Consensus 74 a~qRq~GiLFQD~lLFphlsVg~Nl~fAl----p~~~KG~aRr~~a~aAL~~~gL~g~f~~-----dP~tlSGGQrARva 144 (213)
T COG4136 74 AAQRQIGILFQDALLFPHLSVGQNLLFAL----PATLKGNARRNAANAALERSGLDGAFHQ-----DPATLSGGQRARVA 144 (213)
T ss_pred hhhhheeeeecccccccccccccceEEec----CcccccHHHHhhHHHHHHHhccchhhhc-----ChhhcCcchHHHHH
Confidence 45789999999999999999999999974 4455566777788999999999877665 35789999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH-HHCCcEEEEEecCCCh
Q 008534 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI-AEAGKTVVTTIHQPSS 357 (562)
Q Consensus 306 IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l-~~~g~Tvii~tH~~~~ 357 (562)
+-|+|+..|+.++||||+|.||..-+.++.+..-.- ...|..+|++|||..+
T Consensus 145 L~R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~D 197 (213)
T COG4136 145 LLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQD 197 (213)
T ss_pred HHHHHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEeccccc
Confidence 999999999999999999999999999998887654 3459999999999654
|
|
| >cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-35 Score=280.87 Aligned_cols=158 Identities=27% Similarity=0.393 Sum_probs=132.3
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEccCCCCCCCCCHH
Q 008534 168 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVK 247 (562)
Q Consensus 168 ~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~~~igyV~Q~~~l~~~lTV~ 247 (562)
..+++|+|+||+|++|++++|+|||||||||||++|.+ .+|+|.++|.. ....++.++|++|
T Consensus 6 ~~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~------~~G~v~~~~~~-~~~~~~~~~~~~q----------- 67 (176)
T cd03238 6 ANVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY------ASGKARLISFL-PKFSRNKLIFIDQ----------- 67 (176)
T ss_pred eeeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh------cCCcEEECCcc-cccccccEEEEhH-----------
Confidence 35679999999999999999999999999999999963 27999998873 2222445888887
Q ss_pred HHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCcc-ccccccCcccCCCChhHHHHHHHHHHHhhC--CCEEEEeCCCC
Q 008534 248 ETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC-QDTMIGGSFVRGVSGGERKRVCIGNEIIIN--PSLLFLDEPTS 324 (562)
Q Consensus 248 enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~t~vg~~~~~~LSGGqrqRv~IAraLl~~--P~iLlLDEPTs 324 (562)
.++++.++|... .+. .++.||||||||++|||||+.+ |++|||||||+
T Consensus 68 ------------------------~~~l~~~~L~~~~~~~-----~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~ 118 (176)
T cd03238 68 ------------------------LQFLIDVGLGYLTLGQ-----KLSTLSGGELQRVKLASELFSEPPGTLFILDEPST 118 (176)
T ss_pred ------------------------HHHHHHcCCCccccCC-----CcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcc
Confidence 135666777642 343 4578999999999999999999 99999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeE
Q 008534 325 GLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374 (562)
Q Consensus 325 gLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~i 374 (562)
+||+.++..+.+.|+++.+.|+|||++||++.. + ..||++++|++|..
T Consensus 119 ~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~-~-~~~d~i~~l~~g~~ 166 (176)
T cd03238 119 GLHQQDINQLLEVIKGLIDLGNTVILIEHNLDV-L-SSADWIIDFGPGSG 166 (176)
T ss_pred cCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-H-HhCCEEEEECCCCC
Confidence 999999999999999997779999999999754 4 67999999966543
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-35 Score=280.48 Aligned_cols=153 Identities=27% Similarity=0.422 Sum_probs=132.6
Q ss_pred EeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEE
Q 008534 153 TDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIG 232 (562)
Q Consensus 153 ~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~~~ig 232 (562)
.||+++| +++.+++++ ++|++||+++|+||||||||||+++|+|.+. +.+|+|.++|.+ ++
T Consensus 4 ~~l~~~~--------~~~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~--------i~ 64 (177)
T cd03222 4 PDCVKRY--------GVFFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLI--PNGDNDEWDGIT--------PV 64 (177)
T ss_pred CCeEEEE--------CCEEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCC--CCCcEEEECCEE--------EE
Confidence 5788887 346789985 9999999999999999999999999999653 568999999863 78
Q ss_pred EEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhh
Q 008534 233 FVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIII 312 (562)
Q Consensus 233 yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~ 312 (562)
|++|++. ||||||||++|||+|+.
T Consensus 65 ~~~q~~~--------------------------------------------------------LSgGq~qrv~laral~~ 88 (177)
T cd03222 65 YKPQYID--------------------------------------------------------LSGGELQRVAIAAALLR 88 (177)
T ss_pred EEcccCC--------------------------------------------------------CCHHHHHHHHHHHHHhc
Confidence 8888532 99999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCC-cEEEEEecCCChHHHhcCCEEEEEcCCeEEEe--cChH
Q 008534 313 NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAG-KTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF--GKAS 381 (562)
Q Consensus 313 ~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g-~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~--G~~~ 381 (562)
+|+++||||||++||+.++..+.+.|+++++++ .|||++||++. .+..+||++++|+++-.++. |.|.
T Consensus 89 ~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~~~~~~~~~~~~~ 159 (177)
T cd03222 89 NATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLA-VLDYLSDRIHVFEGEPGVYGIASQPK 159 (177)
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHH-HHHHhCCEEEEEcCCCccceeccCCc
Confidence 999999999999999999999999999997665 89999999975 46678999999998766544 5443
|
RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-35 Score=354.34 Aligned_cols=197 Identities=27% Similarity=0.438 Sum_probs=159.0
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHHH
Q 008534 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKET 249 (562)
Q Consensus 170 ~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~~~igyV~Q~~~l~~~lTV~en 249 (562)
+++|+|+||+|++|++++|+|||||||||||++|+|... +.+|+|.++| .|+||+|++.+|+. ||+||
T Consensus 439 ~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~--~~~G~i~~~g---------~iayv~Q~~~l~~~-Ti~eN 506 (1490)
T TIGR01271 439 TPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELE--PSEGKIKHSG---------RISFSPQTSWIMPG-TIKDN 506 (1490)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECC---------EEEEEeCCCccCCc-cHHHH
Confidence 469999999999999999999999999999999999653 5689999998 39999999999985 99999
Q ss_pred HHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 008534 250 LTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDST 329 (562)
Q Consensus 250 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~ 329 (562)
|.|+.... ........+...+.+.++.+ ++..+|.+|.. +..|||||||||+|||||+.+|+|+||||||++||+.
T Consensus 507 I~~g~~~~-~~~~~~~~~~~~L~~~l~~l--~~g~~t~vg~~-g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~ 582 (1490)
T TIGR01271 507 IIFGLSYD-EYRYTSVIKACQLEEDIALF--PEKDKTVLGEG-GITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVV 582 (1490)
T ss_pred HHhccccc-hHHHHHHHHHHhHHHHHHhc--cccccccccCc-CCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHH
Confidence 99874211 00000000111122233333 44556777765 5679999999999999999999999999999999999
Q ss_pred HHHHHHHH-HHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHHH
Q 008534 330 TALRIVQM-LQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (562)
Q Consensus 330 ~~~~i~~~-L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~~ 385 (562)
++..+++. +..+. +|+|+|++||++.. ...||+|++|++|++++.|+++++..
T Consensus 583 ~~~~i~~~~l~~~~-~~~tvilvtH~~~~--~~~ad~ii~l~~g~i~~~g~~~~l~~ 636 (1490)
T TIGR01271 583 TEKEIFESCLCKLM-SNKTRILVTSKLEH--LKKADKILLLHEGVCYFYGTFSELQA 636 (1490)
T ss_pred HHHHHHHHHHHHHh-cCCeEEEEeCChHH--HHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999984 66665 48999999999864 35699999999999999999998863
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-35 Score=328.71 Aligned_cols=207 Identities=24% Similarity=0.382 Sum_probs=161.0
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhcc
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~ 228 (562)
+|+++||+++| +++.+|+||||+|++|++++|+|||||||||||++|+|... +++|+|.++|..
T Consensus 3 ~l~i~~ls~~~--------~~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~--p~~G~I~~~~~~------ 66 (635)
T PRK11147 3 LISIHGAWLSF--------SDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVL--LDDGRIIYEQDL------ 66 (635)
T ss_pred EEEEeeEEEEe--------CCceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCeEEEeCCCC------
Confidence 58999999998 24679999999999999999999999999999999999543 568999998732
Q ss_pred CcEEEEccCCCCCCCCCHHHHHHHHHh-----------h--CCCC------------------CccHHHHHHHHHHHHHH
Q 008534 229 SKIGFVTQDDVLFPHLTVKETLTYAAL-----------L--RLPN------------------TLTKQQKEKRAIDVINE 277 (562)
Q Consensus 229 ~~igyV~Q~~~l~~~lTV~enl~~~~~-----------~--~~~~------------------~~~~~~~~~~v~~~l~~ 277 (562)
.++|++|++......+|.+++..+.. + .... .........++.++++.
T Consensus 67 -~~~~l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 145 (635)
T PRK11147 67 -IVARLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQ 145 (635)
T ss_pred -EEEEeccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHh
Confidence 26788876543333466665421100 0 0000 00001124567888999
Q ss_pred cCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCCh
Q 008534 278 LGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSS 357 (562)
Q Consensus 278 lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~ 357 (562)
+|+.. +. .+..|||||||||+|||+|+.+|+||||||||++||+.+...+.+.|+++ +.|||+|||++.
T Consensus 146 lgl~~--~~-----~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~---~~tvlivsHd~~- 214 (635)
T PRK11147 146 LGLDP--DA-----ALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTF---QGSIIFISHDRS- 214 (635)
T ss_pred CCCCC--CC-----chhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhC---CCEEEEEeCCHH-
Confidence 99862 33 45789999999999999999999999999999999999999999999887 359999999975
Q ss_pred HHHhcCCEEEEEcCCeEE-EecChHHH
Q 008534 358 RLFHKFDKLILLGKGSLL-YFGKASEA 383 (562)
Q Consensus 358 ~i~~~~D~i~vL~~G~iv-~~G~~~el 383 (562)
.+...||+|++|++|+++ +.|+.++.
T Consensus 215 ~l~~~~d~i~~L~~G~i~~~~g~~~~~ 241 (635)
T PRK11147 215 FIRNMATRIVDLDRGKLVSYPGNYDQY 241 (635)
T ss_pred HHHHhcCeEEEEECCEEEEecCCHHHH
Confidence 467889999999999997 56877653
|
|
| >COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-34 Score=271.88 Aligned_cols=226 Identities=22% Similarity=0.460 Sum_probs=187.7
Q ss_pred eEEEEeEEEEEeec-ccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh--
Q 008534 149 YLKFTDVTYKVILK-GMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~-~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~-- 225 (562)
.|+++|+++.+... +...+....+++.|||+++.|+.+||+|.||||||||.|+|+|.+. |++|+|++||+++.-
T Consensus 4 LLeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~--PTsG~il~n~~~L~~~D 81 (267)
T COG4167 4 LLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE--PTSGEILINDHPLHFGD 81 (267)
T ss_pred hhhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccC--CCCceEEECCccccccc
Confidence 47788888766321 1112234569999999999999999999999999999999999653 569999999998742
Q ss_pred -hcc-CcEEEEccCCC--CCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCC-ccccccccCcccCCCChhH
Q 008534 226 -SLK-SKIGFVTQDDV--LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVSGGE 300 (562)
Q Consensus 226 -~~~-~~igyV~Q~~~--l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~~LSGGq 300 (562)
..| ++|-++||||+ +-|.+.+..-|.....+ ......+.+.+++.+-++.+||- +.++- +++-||-||
T Consensus 82 y~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l--~T~~~~~~R~~~i~~TL~~VGL~Pdhan~-----~~~~la~~Q 154 (267)
T COG4167 82 YSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRL--NTDLEPEQRRKQIFETLRMVGLLPDHANY-----YPHMLAPGQ 154 (267)
T ss_pred hHhhhhheeeeecCCccccChhhhhhhHhcchhhh--cccCChHHHHHHHHHHHHHhccCcccccc-----chhhcCchh
Confidence 233 57999999985 66777777777665543 34566788888999999999984 44443 567899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecC
Q 008534 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (562)
Q Consensus 301 rqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (562)
||||++||||+.+|+|+|.||..++||...+.++++.+.++.++ |.+-|.++.++. .+..++|+|+||++|++|+.|+
T Consensus 155 KQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG-~iKHi~D~viVM~EG~vvE~G~ 233 (267)
T COG4167 155 KQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIG-MIKHISDQVLVMHEGEVVERGS 233 (267)
T ss_pred HHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhh-HhhhhcccEEEEecCceeecCC
Confidence 99999999999999999999999999999999999999999754 999999999876 4778999999999999999999
Q ss_pred hHHHH
Q 008534 380 ASEAM 384 (562)
Q Consensus 380 ~~el~ 384 (562)
+.+++
T Consensus 234 t~~v~ 238 (267)
T COG4167 234 TADVL 238 (267)
T ss_pred hhhhh
Confidence 98875
|
|
| >KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-35 Score=339.17 Aligned_cols=223 Identities=24% Similarity=0.435 Sum_probs=200.0
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh--
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~-- 225 (562)
..+..+|+++.|.. ..+ +++++|+.|++||+.+++|||||||||++++|.|.. ++++|+++++|.++..
T Consensus 563 ~~~~~~~L~k~y~~------~~~-Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~--~~t~G~a~i~g~~i~~~~ 633 (885)
T KOG0059|consen 563 SALVLNNLSKVYGG------KDG-AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGET--KPTSGEALIKGHDITVST 633 (885)
T ss_pred ceEEEcceeeeecc------hhh-hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCc--cCCcceEEEecCcccccc
Confidence 35889999998831 112 999999999999999999999999999999999954 3668999999998863
Q ss_pred ---hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHH
Q 008534 226 ---SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (562)
Q Consensus 226 ---~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrq 302 (562)
..++.+||+||++.+++.+|.+|++.+.++++ ++++.+..+.++.+++.++|.+..++.+ +.+|||+|+
T Consensus 634 ~~~~~~~~iGyCPQ~d~l~~~lT~rEhL~~~arlr---G~~~~di~~~v~~ll~~~~L~~~~~~~~-----~~ySgG~kR 705 (885)
T KOG0059|consen 634 DFQQVRKQLGYCPQFDALWEELTGREHLEFYARLR---GLPRSDIGSAIEKLLRLVGLGPYANKQV-----RTYSGGNKR 705 (885)
T ss_pred chhhhhhhcccCCchhhhhhhccHHHHHHHHHHHc---CCChhHHHHHHHHHHHHcCChhhhccch-----hhCCCcchh
Confidence 26788999999999999999999999999887 4566667777999999999999988865 589999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHH
Q 008534 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (562)
Q Consensus 303 Rv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~e 382 (562)
|+++|.||+.+|++++|||||+|+||.+++.++++++++.++|+.||++||-++ +...+|||+.+|.+|++...|++++
T Consensus 706 kLs~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMe-E~EaLCtR~aImv~G~l~ciGs~q~ 784 (885)
T KOG0059|consen 706 RLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSME-EAEALCTRTAIMVIGQLRCIGSPQE 784 (885)
T ss_pred hHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHHhhhhheeecCeeEEecChHH
Confidence 999999999999999999999999999999999999999988889999999965 5888999999999999999999999
Q ss_pred HHHHHH
Q 008534 383 AMAYFS 388 (562)
Q Consensus 383 l~~~f~ 388 (562)
+..+|.
T Consensus 785 LKsrfG 790 (885)
T KOG0059|consen 785 LKSRYG 790 (885)
T ss_pred HHhhcC
Confidence 987775
|
|
| >cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-34 Score=269.13 Aligned_cols=152 Identities=37% Similarity=0.721 Sum_probs=135.6
Q ss_pred EEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh----hc
Q 008534 152 FTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SL 227 (562)
Q Consensus 152 ~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~----~~ 227 (562)
++|+++.|. .+.+|+++|++|++|++++|+||||||||||+++|+|.+. +.+|+|+++|.++.. ..
T Consensus 2 ~~~~~~~~~--------~~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~--~~~G~i~~~~~~~~~~~~~~~ 71 (157)
T cd00267 2 IENLSFRYG--------GRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLK--PTSGEILIDGKDIAKLPLEEL 71 (157)
T ss_pred eEEEEEEeC--------CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCccEEEECCEEcccCCHHHH
Confidence 688999872 3479999999999999999999999999999999999653 468999999987643 34
Q ss_pred cCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHH
Q 008534 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (562)
Q Consensus 228 ~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA 307 (562)
++.++|++| |||||+||++||
T Consensus 72 ~~~i~~~~q-----------------------------------------------------------lS~G~~~r~~l~ 92 (157)
T cd00267 72 RRRIGYVPQ-----------------------------------------------------------LSGGQRQRVALA 92 (157)
T ss_pred HhceEEEee-----------------------------------------------------------CCHHHHHHHHHH
Confidence 567899988 999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCe
Q 008534 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGS 373 (562)
Q Consensus 308 raLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~ 373 (562)
|+|+.+|++++|||||+|||+.++..+.+.|+++.+.++|+|++||++.. +...||++++|++|+
T Consensus 93 ~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~-~~~~~d~i~~l~~g~ 157 (157)
T cd00267 93 RALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPEL-AELAADRVIVLKDGK 157 (157)
T ss_pred HHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH-HHHhCCEEEEEeCcC
Confidence 99999999999999999999999999999999987767999999999754 667789999999875
|
The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-34 Score=333.46 Aligned_cols=208 Identities=24% Similarity=0.398 Sum_probs=174.4
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhc
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~ 227 (562)
..++++|.+++|.. ....+.|+||||+|++|+++||+||-|||||+||.+|.|.+. ..+|.|.++|.
T Consensus 517 ~~i~i~~~sfsW~~-----~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~--~~sG~v~v~gs------ 583 (1381)
T KOG0054|consen 517 NAIEIKNGSFSWDS-----ESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMP--KLSGSVAVNGS------ 583 (1381)
T ss_pred ceEEEeeeeEecCC-----CCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcc--cccceEEEcCe------
Confidence 36999999999842 234459999999999999999999999999999999999764 56899999986
Q ss_pred cCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcC-------CCccccccccCcccCCCChhH
Q 008534 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG-------LERCQDTMIGGSFVRGVSGGE 300 (562)
Q Consensus 228 ~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~t~vg~~~~~~LSGGq 300 (562)
++||+|.|.+++ .||+|||.|+... .+ ++.+++++... |+.+-.|.||++++ +|||||
T Consensus 584 ---iaYv~Q~pWI~n-gTvreNILFG~~~------d~----~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGi-nLSGGQ 648 (1381)
T KOG0054|consen 584 ---VAYVPQQPWIQN-GTVRENILFGSPY------DE----ERYDKVIKACALKKDLEILPFGDLTEIGERGI-NLSGGQ 648 (1381)
T ss_pred ---EEEeccccHhhC-CcHHHhhhcCccc------cH----HHHHHHHHHccCHhHHhhcCCCCcceecCCcc-CCcHhH
Confidence 999999999997 5999999998532 12 23333333332 35566788887765 599999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecCh
Q 008534 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 380 (562)
Q Consensus 301 rqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~ 380 (562)
||||+||||+.++++|++||.|.|++|......|.+..-...-+++|+|++||+.. ....||.|++|++|+|++.|++
T Consensus 649 KqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~--~L~~ad~Iivl~~G~I~~~Gty 726 (1381)
T KOG0054|consen 649 KQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQ--FLPHADQIIVLKDGKIVESGTY 726 (1381)
T ss_pred HHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchh--hhhhCCEEEEecCCeEecccCH
Confidence 99999999999999999999999999999999988665544445899999999865 4688999999999999999999
Q ss_pred HHHHH
Q 008534 381 SEAMA 385 (562)
Q Consensus 381 ~el~~ 385 (562)
+|+++
T Consensus 727 ~el~~ 731 (1381)
T KOG0054|consen 727 EELLK 731 (1381)
T ss_pred HHHHh
Confidence 99983
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-34 Score=317.85 Aligned_cols=188 Identities=28% Similarity=0.386 Sum_probs=154.3
Q ss_pred EEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEE-----------ECCEeC
Q 008534 155 VTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSIT-----------YNDHPY 223 (562)
Q Consensus 155 vs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~-----------i~G~~~ 223 (562)
++++|. ....+|++++ .+++|++++|+||||||||||+|+|+|.+. +.+|+|. ++|.++
T Consensus 79 ~~~~yg-------~~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~--p~~G~i~~~~~~~~~~~~~~G~~l 148 (590)
T PRK13409 79 PVHRYG-------VNGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELI--PNLGDYEEEPSWDEVLKRFRGTEL 148 (590)
T ss_pred ceEEec-------CCceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCcc--CCCccccCCCcHHHHHHHhCChHH
Confidence 666761 2246999999 999999999999999999999999999653 4589997 999887
Q ss_pred Chh------ccCcEEEEccC----CCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCccc
Q 008534 224 SKS------LKSKIGFVTQD----DVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFV 293 (562)
Q Consensus 224 ~~~------~~~~igyV~Q~----~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~ 293 (562)
... .+.++++++|. +.+|. .||+|++.+. +...++.++++.++|.+..++. +
T Consensus 149 ~~~~~~~~~~~~~~~~~~q~~~~~p~~~~-~tv~e~l~~~------------~~~~~~~~~l~~l~l~~~~~~~-----~ 210 (590)
T PRK13409 149 QNYFKKLYNGEIKVVHKPQYVDLIPKVFK-GKVRELLKKV------------DERGKLDEVVERLGLENILDRD-----I 210 (590)
T ss_pred HHHHHHHhccCcceeecccchhhhhhhhc-chHHHHHHhh------------hHHHHHHHHHHHcCCchhhcCC-----h
Confidence 431 12335655554 44443 3999998741 1234678899999998776665 4
Q ss_pred CCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCC
Q 008534 294 RGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKG 372 (562)
Q Consensus 294 ~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G 372 (562)
.+|||||||||+||+||+.+|++|||||||++||+.++..+.+.|+++++ |+|||+++|++. .+..+||+|++|+++
T Consensus 211 ~~LSgGe~qrv~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~-g~tvIivsHd~~-~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 211 SELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAE-GKYVLVVEHDLA-VLDYLADNVHIAYGE 287 (590)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCEEEEEeCCHH-HHHHhCCEEEEEeCC
Confidence 68999999999999999999999999999999999999999999999988 999999999976 477889999999873
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-33 Score=341.85 Aligned_cols=199 Identities=27% Similarity=0.374 Sum_probs=155.3
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHH
Q 008534 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKE 248 (562)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~~~igyV~Q~~~l~~~lTV~e 248 (562)
++++|+||||+|++|++++|+|||||||||||++|+|.+. +.+|+|.++ +.|+||+|++.+|+ .||+|
T Consensus 672 ~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~--~~~G~i~~~---------~~i~yv~Q~~~l~~-~Tv~e 739 (1560)
T PTZ00243 672 PKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFE--ISEGRVWAE---------RSIAYVPQQAWIMN-ATVRG 739 (1560)
T ss_pred CceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEEC---------CeEEEEeCCCccCC-CcHHH
Confidence 4569999999999999999999999999999999999653 458999863 46999999999985 69999
Q ss_pred HHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 008534 249 TLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDS 328 (562)
Q Consensus 249 nl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~ 328 (562)
||.|+.... .....+..+...+++.++.+ ++..++.+|. .+..|||||||||+|||||+.+|+||||||||++||+
T Consensus 740 nI~~~~~~~-~~~~~~~~~~~~l~~~l~~l--~~g~~t~i~~-~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~ 815 (1560)
T PTZ00243 740 NILFFDEED-AARLADAVRVSQLEADLAQL--GGGLETEIGE-KGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDA 815 (1560)
T ss_pred HHHcCChhh-HHHHHHHHHHhhhHHHHHHh--hccchHHhcC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCH
Confidence 999853110 00000001111233344444 3344566654 3578999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHHH
Q 008534 329 TTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (562)
Q Consensus 329 ~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~~ 385 (562)
.++..+++.+.....+|+|+|++||++.. ...||+|++|++|++++.|+++++++
T Consensus 816 ~~~~~i~~~~~~~~~~~~TvIlvTH~~~~--~~~ad~ii~l~~G~i~~~G~~~~l~~ 870 (1560)
T PTZ00243 816 HVGERVVEECFLGALAGKTRVLATHQVHV--VPRADYVVALGDGRVEFSGSSADFMR 870 (1560)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEEeCCHHH--HHhCCEEEEEECCEEEEecCHHHHHh
Confidence 99999887543222358999999999754 46799999999999999999998753
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-33 Score=304.70 Aligned_cols=207 Identities=29% Similarity=0.451 Sum_probs=168.1
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhcc
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~ 228 (562)
+|+++|+++.| +.+++|+|+|+++.+|+.+||||+||||||||||+|+|... +.+|+|...+-
T Consensus 3 ~i~~~~ls~~~--------g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~--~~~G~i~~~~~------- 65 (530)
T COG0488 3 MITLENLSLAY--------GDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELE--PDSGEVTRPKG------- 65 (530)
T ss_pred eEEEeeeEEee--------CCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCc--CCCCeEeecCC-------
Confidence 68999999998 47889999999999999999999999999999999999653 56899987542
Q ss_pred CcEEEEccCCCCCCCCCHHHHHHHHHhhCC--CCCccH-------------------------HHHHHHHHHHHHHcCCC
Q 008534 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRL--PNTLTK-------------------------QQKEKRAIDVINELGLE 281 (562)
Q Consensus 229 ~~igyV~Q~~~l~~~lTV~enl~~~~~~~~--~~~~~~-------------------------~~~~~~v~~~l~~lgL~ 281 (562)
-+|+|++|++.+.+..||.+.+.-+..... ...... -..+.++..++..+|++
T Consensus 66 ~~v~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~ 145 (530)
T COG0488 66 LRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFP 145 (530)
T ss_pred ceEEEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCC
Confidence 259999999999988899998876532100 000000 01135667788888887
Q ss_pred ccccccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHh
Q 008534 282 RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFH 361 (562)
Q Consensus 282 ~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~ 361 (562)
+. ++. +.+||||||.||+||+||+.+|+||||||||++||..+..-+-+.|++. .| |+|+|||| ..-+-.
T Consensus 146 ~~-~~~-----~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~--~g-tviiVSHD-R~FLd~ 215 (530)
T COG0488 146 DE-DRP-----VSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY--PG-TVIVVSHD-RYFLDN 215 (530)
T ss_pred cc-cCc-----hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC--CC-cEEEEeCC-HHHHHH
Confidence 65 554 4689999999999999999999999999999999999999998888854 46 99999999 555778
Q ss_pred cCCEEEEEcCCeE-EEecChHH
Q 008534 362 KFDKLILLGKGSL-LYFGKASE 382 (562)
Q Consensus 362 ~~D~i~vL~~G~i-v~~G~~~e 382 (562)
.|++|+-++.|++ .|.|..+.
T Consensus 216 V~t~I~~ld~g~l~~y~Gny~~ 237 (530)
T COG0488 216 VATHILELDRGKLTPYKGNYSS 237 (530)
T ss_pred HhhheEEecCCceeEecCCHHH
Confidence 9999999999976 56666544
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-33 Score=318.53 Aligned_cols=218 Identities=22% Similarity=0.286 Sum_probs=156.7
Q ss_pred ceeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC-CCCccEEEECCEe---
Q 008534 147 PIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-PTVGGSITYNDHP--- 222 (562)
Q Consensus 147 ~~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~-~~~~G~I~i~G~~--- 222 (562)
...|+++||+++| +++.+|+|+||+|++|+++||+|||||||||||++|+|+... .+.+|+|.+.++.
T Consensus 175 ~~~I~i~nls~~y--------~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g 246 (718)
T PLN03073 175 IKDIHMENFSISV--------GGRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVG 246 (718)
T ss_pred ceeEEEceEEEEe--------CCCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCC
Confidence 3479999999998 245699999999999999999999999999999999985421 2346888754432
Q ss_pred --CCh-------------hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCC---------------ccHHHHHHHHH
Q 008534 223 --YSK-------------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNT---------------LTKQQKEKRAI 272 (562)
Q Consensus 223 --~~~-------------~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~---------------~~~~~~~~~v~ 272 (562)
.+. .+++.++|++|++.+... ++.++.........+.. ......++++.
T Consensus 247 ~~~t~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~ 325 (718)
T PLN03073 247 DDTTALQCVLNTDIERTQLLEEEAQLVAQQRELEFE-TETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAA 325 (718)
T ss_pred CCCCHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhc-ccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHH
Confidence 110 012336677776543221 22222111000000000 00012344566
Q ss_pred HHHHHcCCC-ccccccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEE
Q 008534 273 DVINELGLE-RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTT 351 (562)
Q Consensus 273 ~~l~~lgL~-~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~ 351 (562)
+++..+|+. +..++ .+.+|||||||||+||++|+.+|+||||||||++||+.+...+.+.|+++ +.|||++
T Consensus 326 ~~L~~lgl~~~~~~~-----~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~---~~tviiv 397 (718)
T PLN03073 326 SILAGLSFTPEMQVK-----ATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW---PKTFIVV 397 (718)
T ss_pred HHHHHCCCChHHHhC-----chhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc---CCEEEEE
Confidence 778888885 23343 34689999999999999999999999999999999999999999999876 6799999
Q ss_pred ecCCChHHHhcCCEEEEEcCCeEE-EecChHH
Q 008534 352 IHQPSSRLFHKFDKLILLGKGSLL-YFGKASE 382 (562)
Q Consensus 352 tH~~~~~i~~~~D~i~vL~~G~iv-~~G~~~e 382 (562)
||+.. .+...||+|++|++|+++ +.|+.++
T Consensus 398 sHd~~-~l~~~~d~i~~l~~g~i~~~~g~~~~ 428 (718)
T PLN03073 398 SHARE-FLNTVVTDILHLHGQKLVTYKGDYDT 428 (718)
T ss_pred ECCHH-HHHHhCCEEEEEECCEEEEeCCCHHH
Confidence 99965 467789999999999996 6777654
|
|
| >COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-33 Score=259.03 Aligned_cols=214 Identities=29% Similarity=0.484 Sum_probs=169.1
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCE---eCC-
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDH---PYS- 224 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~---~~~- 224 (562)
.+++.++|+.| +.....+||||.+.|||+++|+|.|||||||||+||++++. ++.|+|.|.-. +..
T Consensus 6 LL~V~~lsk~Y--------g~~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~--p~~G~v~Y~~r~~~~~dl 75 (258)
T COG4107 6 LLSVSGLSKLY--------GPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLT--PDAGTVTYRMRDGQPRDL 75 (258)
T ss_pred ceeehhhhhhh--------CCCcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccC--CCCCeEEEEcCCCCchhH
Confidence 58899999988 34457899999999999999999999999999999999875 56899998643 221
Q ss_pred ----h-----hccCcEEEEccCCC--CCCCCC----HHHHHH-HHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccc
Q 008534 225 ----K-----SLKSKIGFVTQDDV--LFPHLT----VKETLT-YAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMI 288 (562)
Q Consensus 225 ----~-----~~~~~igyV~Q~~~--l~~~lT----V~enl~-~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~v 288 (562)
+ -+|...|||.|+|. +-...+ |-|-+. .+.+ ......+.+.++++++.++... +
T Consensus 76 ~~msEaeRR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~R-------HYG~iR~~a~~WL~~VEI~~~R---i 145 (258)
T COG4107 76 YTMSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGAR-------HYGNIRAEAQDWLEEVEIDLDR---I 145 (258)
T ss_pred hhhchHHHHHHhhhccceeecCccccceeeeccCCccchhHHhhhhh-------hhhhHHHHHHHHHHhcccCccc---c
Confidence 1 13456899999974 322223 333332 1111 1223455677899988776421 2
Q ss_pred cCcccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEE
Q 008534 289 GGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLI 367 (562)
Q Consensus 289 g~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~ 367 (562)
+..++.+||||+||+.|||.|++.|+++|+||||-|||...+..+++.++.+..+ |..++++|||+.- +--++||.+
T Consensus 146 -DD~PrtFSGGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~V-arLla~rlm 223 (258)
T COG4107 146 -DDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAV-ARLLADRLM 223 (258)
T ss_pred -cCcccccchHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHH-HHHhhhcce
Confidence 3457899999999999999999999999999999999999999999999999765 9999999999753 445799999
Q ss_pred EEcCCeEEEecChHHHH
Q 008534 368 LLGKGSLLYFGKASEAM 384 (562)
Q Consensus 368 vL~~G~iv~~G~~~el~ 384 (562)
+|++|++++.|-.+.++
T Consensus 224 vmk~g~vve~GLTDrvL 240 (258)
T COG4107 224 VMKQGQVVESGLTDRVL 240 (258)
T ss_pred eecCCCEeccccccccc
Confidence 99999999999887765
|
|
| >COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-32 Score=258.04 Aligned_cols=187 Identities=25% Similarity=0.431 Sum_probs=159.9
Q ss_pred EEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---h
Q 008534 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---S 226 (562)
Q Consensus 150 l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~---~ 226 (562)
++.+|+++. +.++.++.++||++.+||++-|.|||||||||||++|+|.+. +.+|+|.++|.++.. .
T Consensus 3 L~a~~L~~~--------R~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~--p~~G~v~~~~~~i~~~~~~ 72 (209)
T COG4133 3 LEAENLSCE--------RGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLR--PDAGEVYWQGEPIQNVRES 72 (209)
T ss_pred chhhhhhhc--------cCcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccC--CCCCeEEecCCCCccchhh
Confidence 566777664 246789999999999999999999999999999999999654 568999999998863 2
Q ss_pred ccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHH
Q 008534 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (562)
Q Consensus 227 ~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~I 306 (562)
+++.+-|+--.+-+=+.+||.|||.|....... .....+.+.++.+||....|.++ ..||-||||||+|
T Consensus 73 ~~~~l~yLGH~~giK~eLTa~ENL~F~~~~~~~------~~~~~i~~Al~~vgL~g~~dlp~-----~~LSAGQqRRvAl 141 (209)
T COG4133 73 YHQALLYLGHQPGIKTELTALENLHFWQRFHGS------GNAATIWEALAQVGLAGLEDLPV-----GQLSAGQQRRVAL 141 (209)
T ss_pred HHHHHHHhhccccccchhhHHHHHHHHHHHhCC------CchhhHHHHHHHcCcccccccch-----hhcchhHHHHHHH
Confidence 445677887788888899999999998765321 12346788999999998888765 5899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCCh
Q 008534 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSS 357 (562)
Q Consensus 307 AraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~ 357 (562)
||-+++.+++.||||||++||......+-..+..-+.+|-.||.+|||+..
T Consensus 142 ArL~ls~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l~ 192 (209)
T COG4133 142 ARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQPLP 192 (209)
T ss_pred HHHHcCCCCceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCccC
Confidence 999999999999999999999999999999998877788899999999864
|
|
| >cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.5e-31 Score=264.29 Aligned_cols=190 Identities=23% Similarity=0.376 Sum_probs=135.0
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHH-HHHHcCCCCCCCccEEEEC------------CEeCCh--hcc-CcEE
Q 008534 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLL-NLLSGRLMEPTVGGSITYN------------DHPYSK--SLK-SKIG 232 (562)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl-~~L~G~l~~~~~~G~I~i~------------G~~~~~--~~~-~~ig 232 (562)
+..+|+||||+|++||+++|+||||||||||+ ..|.. .|++.+. .....+ ..+ ...+
T Consensus 7 ~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~~-------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (226)
T cd03270 7 REHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYA-------EGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSPA 79 (226)
T ss_pred hhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHHH-------HHHHHHhhcccchhhhhhcccCccccccccCCCce
Confidence 56799999999999999999999999999996 44431 1221110 000000 111 2244
Q ss_pred EEccCCC--CCCCCCHH---HHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCc-cccccccCcccCCCChhHHHHHHH
Q 008534 233 FVTQDDV--LFPHLTVK---ETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVRGVSGGERKRVCI 306 (562)
Q Consensus 233 yV~Q~~~--l~~~lTV~---enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~t~vg~~~~~~LSGGqrqRv~I 306 (562)
+..|++. +.+..+|. +...+...+. .......+ .+.++.++|.+ ..+. ++.+|||||||||+|
T Consensus 80 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~~~-~~~l~~~~l~~~~~~~-----~~~~LSgG~~qrv~l 148 (226)
T cd03270 80 IAIDQKTTSRNPRSTVGTVTEIYDYLRLLF-----ARVGIRER-LGFLVDVGLGYLTLSR-----SAPTLSGGEAQRIRL 148 (226)
T ss_pred EEecCCCCCCCCCccHHHHHHHHHHHHHHh-----hhhhHHHH-HHHHHHCCCCcccccC-----ccCcCCHHHHHHHHH
Confidence 4444432 23444544 2222211111 11112222 46789999975 2443 457899999999999
Q ss_pred HHHHhhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEE------cCCeEEEec
Q 008534 307 GNEIIINP--SLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL------GKGSLLYFG 378 (562)
Q Consensus 307 AraLl~~P--~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL------~~G~iv~~G 378 (562)
||||+.+| ++|||||||+|||+.++..+.+.|+++++.|.|||++||++.. + ..||+|++| ++|+|+++|
T Consensus 149 aral~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~~-~-~~~d~i~~l~~~~~~~~G~iv~~g 226 (226)
T cd03270 149 ATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDEDT-I-RAADHVIDIGPGAGVHGGEIVAQG 226 (226)
T ss_pred HHHHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHHH-H-HhCCEEEEeCCCccccCCEEEecC
Confidence 99999998 5999999999999999999999999998779999999999753 4 689999999 999999987
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.7e-32 Score=250.39 Aligned_cols=213 Identities=27% Similarity=0.422 Sum_probs=173.1
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEe--CC-
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP--YS- 224 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~--~~- 224 (562)
..|..+||++++.-.. ..+-.-++|+||||+++.||++++=|||||||||||++|.|.+. +++|+|++.-.. +.
T Consensus 3 ~~l~v~~~~KtFtlH~-q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~--~d~G~I~v~H~g~~vdl 79 (235)
T COG4778 3 TPLNVSNVSKTFTLHQ-QGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYL--PDEGQILVRHEGEWVDL 79 (235)
T ss_pred ceeeeecchhheEeee-cCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccC--CCCceEEEEeCcchhhh
Confidence 3588899988775321 11224579999999999999999999999999999999998543 468999985432 21
Q ss_pred -----h---hc-cCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCC
Q 008534 225 -----K---SL-KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRG 295 (562)
Q Consensus 225 -----~---~~-~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~ 295 (562)
. .. ++-||||.|.-...|..+..|.+.-....+ ++..+....++.+++.++++++....+ .+.+
T Consensus 80 ~~a~pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~---gv~~~~a~~~a~~Ll~rLnlperLW~L----aPaT 152 (235)
T COG4778 80 VTAEPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLAR---GVPREVARAKAADLLTRLNLPERLWSL----APAT 152 (235)
T ss_pred hccChHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCCHHHhcC----CCcc
Confidence 1 12 456999999988888888888777655333 566777788899999999998765543 4678
Q ss_pred CChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcC
Q 008534 296 VSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK 371 (562)
Q Consensus 296 LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~ 371 (562)
+||||+|||.|||.++.+-+||+|||||++||..++.-++++|++-+..|..+|=|-|| .+.-...|||++-+..
T Consensus 153 FSGGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHD-eevre~vadR~~~~~~ 227 (235)
T COG4778 153 FSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHD-EEVREAVADRLLDVSA 227 (235)
T ss_pred cCCchheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeecc-HHHHHHHhhheeeccc
Confidence 99999999999999999999999999999999999999999999988889999999999 4444568999998753
|
|
| >PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-31 Score=243.02 Aligned_cols=133 Identities=44% Similarity=0.768 Sum_probs=116.9
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh----hccCcEEEEccCCCCCCCCCHHH
Q 008534 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHLTVKE 248 (562)
Q Consensus 173 L~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~----~~~~~igyV~Q~~~l~~~lTV~e 248 (562)
|+|||++|++|++++|+||||||||||+++|+|... +.+|.|.++|.++.. ..++.++|++|++.+++.+||+|
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~--~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~ 78 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLP--PDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVRE 78 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSH--ESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHH
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeeccccc--cccccccccccccccccccccccccccccccccccccccccc
Confidence 799999999999999999999999999999999543 468999999999864 35788999999999999999999
Q ss_pred HHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCC
Q 008534 249 TLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTS 324 (562)
Q Consensus 249 nl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTs 324 (562)
| ....++.++++.+++.+..++.++.. ...|||||||||+|||||+.+|++|||||||+
T Consensus 79 ~----------------~~~~~~~~~l~~l~~~~~~~~~~~~~-~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 79 N----------------ESDERIEEVLKKLGLEDLLDRKIGQR-ASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp H----------------HHHHHHHHHHHHTTHGGGTGSBGTSC-GGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred c----------------cccccccccccccccccccccccccc-cchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 9 12345778899999888777776543 47899999999999999999999999999996
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D .... |
| >cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-30 Score=264.10 Aligned_cols=195 Identities=27% Similarity=0.410 Sum_probs=153.1
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHH-----cCCCC----C----------CCccEEEECCEeCChhccC-
Q 008534 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLS-----GRLME----P----------TVGGSITYNDHPYSKSLKS- 229 (562)
Q Consensus 170 ~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~-----G~l~~----~----------~~~G~I~i~G~~~~~~~~~- 229 (562)
..-|+|||++|+.|.+++|.|+||||||||++.+. ..+.. + ...--|.+|..|+.+..|.
T Consensus 8 ~~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~ 87 (261)
T cd03271 8 ENNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSN 87 (261)
T ss_pred hhcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCc
Confidence 35799999999999999999999999999998652 11110 0 0112477787776421111
Q ss_pred -----------------------------cEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCC
Q 008534 230 -----------------------------KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL 280 (562)
Q Consensus 230 -----------------------------~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL 280 (562)
.+.|..++...+..+||.|++.|..... ...++.++++.+||
T Consensus 88 ~~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~---------~~~~~~~~L~~vgL 158 (261)
T cd03271 88 PATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIP---------KIARKLQTLCDVGL 158 (261)
T ss_pred HHHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhh---------hHHHHHHHHHHcCC
Confidence 1456666666667899999999875331 12356778999999
Q ss_pred Cc-cccccccCcccCCCChhHHHHHHHHHHHhhC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCC
Q 008534 281 ER-CQDTMIGGSFVRGVSGGERKRVCIGNEIIIN---PSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPS 356 (562)
Q Consensus 281 ~~-~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~---P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~ 356 (562)
.+ ..+. .+..||||||||++|||+|+.+ |+++||||||+|||+.....+++.|+++.+.|.|||+++|++.
T Consensus 159 ~~l~l~~-----~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~ 233 (261)
T cd03271 159 GYIKLGQ-----PATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLD 233 (261)
T ss_pred chhhhcC-----ccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 76 2343 3578999999999999999996 7999999999999999999999999999888999999999975
Q ss_pred hHHHhcCCEEEEE------cCCeEEEecCh
Q 008534 357 SRLFHKFDKLILL------GKGSLLYFGKA 380 (562)
Q Consensus 357 ~~i~~~~D~i~vL------~~G~iv~~G~~ 380 (562)
. ...||++++| ++|++++.|++
T Consensus 234 ~--i~~aD~ii~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 234 V--IKCADWIIDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred H--HHhCCEEEEecCCcCCCCCEEEEeCCC
Confidence 3 4679999999 89999999974
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-29 Score=278.10 Aligned_cols=205 Identities=28% Similarity=0.440 Sum_probs=166.5
Q ss_pred ceeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChh
Q 008534 147 PIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS 226 (562)
Q Consensus 147 ~~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~ 226 (562)
...++++|+++.|. +.+.+++++||.|.+|+.+||+||||+|||||||+|+|.+. +.+|.|.+.-.
T Consensus 319 ~~vl~~~~~~~~y~-------~~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~--~~~G~v~~g~~----- 384 (530)
T COG0488 319 KLVLEFENVSKGYD-------GGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELG--PLSGTVKVGET----- 384 (530)
T ss_pred CeeEEEeccccccC-------CCceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcc--cCCceEEeCCc-----
Confidence 34799999999982 23689999999999999999999999999999999999553 44899876532
Q ss_pred ccCcEEEEccCC-CCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHH
Q 008534 227 LKSKIGFVTQDD-VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC 305 (562)
Q Consensus 227 ~~~~igyV~Q~~-~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ 305 (562)
-+|||..|+. .+++..|+.|++.-.. +. ..+..+...+..|+++...- ...+..||||||.||.
T Consensus 385 --v~igyf~Q~~~~l~~~~t~~d~l~~~~----~~-----~~e~~~r~~L~~f~F~~~~~----~~~v~~LSGGEk~Rl~ 449 (530)
T COG0488 385 --VKIGYFDQHRDELDPDKTVLEELSEGF----PD-----GDEQEVRAYLGRFGFTGEDQ----EKPVGVLSGGEKARLL 449 (530)
T ss_pred --eEEEEEEehhhhcCccCcHHHHHHhhC----cc-----ccHHHHHHHHHHcCCChHHH----hCchhhcCHhHHHHHH
Confidence 2499999986 5557789999987542 11 11556788999999974321 2345789999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEe-cChHHHH
Q 008534 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF-GKASEAM 384 (562)
Q Consensus 306 IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~-G~~~el~ 384 (562)
+|+.++.+|.+|||||||+.||..+...+.+.|.++ .-|||+||||.. .+-..|++|+++.+ ++..+ |..++..
T Consensus 450 La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f---~Gtvl~VSHDr~-Fl~~va~~i~~~~~-~~~~~~g~y~~y~ 524 (530)
T COG0488 450 LAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF---EGTVLLVSHDRY-FLDRVATRIWLVED-KVEEFEGGYEDYL 524 (530)
T ss_pred HHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC---CCeEEEEeCCHH-HHHhhcceEEEEcC-ceeEcCCCHHHHH
Confidence 999999999999999999999999999999999876 349999999954 57789999999998 66555 7776654
Q ss_pred H
Q 008534 385 A 385 (562)
Q Consensus 385 ~ 385 (562)
+
T Consensus 525 ~ 525 (530)
T COG0488 525 E 525 (530)
T ss_pred H
Confidence 4
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.4e-29 Score=268.10 Aligned_cols=213 Identities=23% Similarity=0.443 Sum_probs=177.7
Q ss_pred ceeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh-
Q 008534 147 PIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK- 225 (562)
Q Consensus 147 ~~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~- 225 (562)
++.++++|++.. ..++||||++++||+++|-|-=|||+|=|+++|.|. .+..+|+|.+||+++..
T Consensus 261 ~~~l~v~~l~~~------------~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~--~~~~~G~i~l~G~~v~~~ 326 (500)
T COG1129 261 EPVLEVRNLSGG------------GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGA--RPASSGEILLDGKPVRIR 326 (500)
T ss_pred CcEEEEecCCCC------------CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCC--CcCCCceEEECCEEccCC
Confidence 346788877642 268999999999999999999999999999999993 34568999999998752
Q ss_pred ----hccCcEEEEccC---CCCCCCCCHHHHHHHHHhhCCC-C-CccHHHHHHHHHHHHHHcCCCc-cccccccCcccCC
Q 008534 226 ----SLKSKIGFVTQD---DVLFPHLTVKETLTYAALLRLP-N-TLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVRG 295 (562)
Q Consensus 226 ----~~~~~igyV~Q~---~~l~~~lTV~enl~~~~~~~~~-~-~~~~~~~~~~v~~~l~~lgL~~-~~~t~vg~~~~~~ 295 (562)
..+..|+|||.| .-++..++|.+|+.++...+.. . -+......+.+.++++.+++.. ..+. .+..
T Consensus 327 sp~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~-----~v~~ 401 (500)
T COG1129 327 SPRDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQ-----PIGT 401 (500)
T ss_pred CHHHHHHcCCEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccc-----hhhc
Confidence 356789999988 4588899999999988322211 1 2455556667888999998852 2223 4568
Q ss_pred CChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEE
Q 008534 296 VSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLL 375 (562)
Q Consensus 296 LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv 375 (562)
||||.+|||.|||.|..+|+||||||||.|.|.-+..+|++.|++++++|++||++|.++. ++..+||||+||++|+++
T Consensus 402 LSGGNQQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElp-Ell~~~DRIlVm~~Gri~ 480 (500)
T COG1129 402 LSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELP-ELLGLSDRILVMREGRIV 480 (500)
T ss_pred CCchhhhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChH-HHHhhCCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999999999999999999999999965 688999999999999998
Q ss_pred EecC
Q 008534 376 YFGK 379 (562)
Q Consensus 376 ~~G~ 379 (562)
..=+
T Consensus 481 ~e~~ 484 (500)
T COG1129 481 GELD 484 (500)
T ss_pred EEec
Confidence 7543
|
|
| >cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.1e-29 Score=245.51 Aligned_cols=165 Identities=18% Similarity=0.274 Sum_probs=129.4
Q ss_pred eceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC-------CCCccEEEECCEeCCh-hccCcEEEEccCCCCCCCCC
Q 008534 174 NGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-------PTVGGSITYNDHPYSK-SLKSKIGFVTQDDVLFPHLT 245 (562)
Q Consensus 174 ~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~-------~~~~G~I~i~G~~~~~-~~~~~igyV~Q~~~l~~~lT 245 (562)
+++++++.+| +++|+||||||||||+++|+|.+.. ....|++.++|.+... ..+++|+||+|++..+
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~---- 88 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGR---- 88 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCc----
Confidence 7889999999 9999999999999999999985421 1123568788876532 2356799999998766
Q ss_pred HHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHh----hCCCEEEEeC
Q 008534 246 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEII----INPSLLFLDE 321 (562)
Q Consensus 246 V~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl----~~P~iLlLDE 321 (562)
|+. . . .+++.++++. .+..++ .+..||||||||++||++|+ .+|+++||||
T Consensus 89 ------~~~--~-----~----~~~~~~~l~~---~~~~~~-----~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDE 143 (197)
T cd03278 89 ------YSI--I-----S----QGDVSEIIEA---PGKKVQ-----RLSLLSGGEKALTALALLFAIFRVRPSPFCVLDE 143 (197)
T ss_pred ------eeE--E-----e----hhhHHHHHhC---CCcccc-----chhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeC
Confidence 110 0 0 2345566665 333333 35789999999999999997 4679999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcC
Q 008534 322 PTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK 371 (562)
Q Consensus 322 PTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~ 371 (562)
||+|||+.....+.+.|+++++ +.|||++||++.. .+.||+++.|..
T Consensus 144 P~~~LD~~~~~~l~~~l~~~~~-~~tiIiitH~~~~--~~~~d~v~~~~~ 190 (197)
T cd03278 144 VDAALDDANVERFARLLKEFSK-ETQFIVITHRKGT--MEAADRLYGVTM 190 (197)
T ss_pred CcccCCHHHHHHHHHHHHHhcc-CCEEEEEECCHHH--HhhcceEEEEEe
Confidence 9999999999999999999865 7899999999753 478999999864
|
Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w |
| >COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.4e-29 Score=233.40 Aligned_cols=207 Identities=29% Similarity=0.479 Sum_probs=172.6
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
.++++||... .-|-.+|+.+..||++-+||||||||||||-.++|.+ +-+|+|.++|.++..
T Consensus 3 l~qln~v~~~------------tRL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~---~~sGsi~~~G~~l~~~~~ 67 (248)
T COG4138 3 LMQLNDVAES------------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT---SGSGSIQFAGQPLEAWSA 67 (248)
T ss_pred eeeecccccc------------ccccccccccccceEEEEECCCCccHHHHHHHHhCCC---CCCceEEECCcchhHHhH
Confidence 4667777653 2377899999999999999999999999999999965 348999999999853
Q ss_pred -hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHH
Q 008534 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (562)
Q Consensus 226 -~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 304 (562)
++.++-+|..|+..-...|.|...+.+. .| .......+.++...++|.+...+. +..|||||.|||
T Consensus 68 ~eLArhRAYLsQqq~p~f~mpV~~YL~L~----qP----~~~~a~~i~~i~~~L~l~DKL~Rs-----~~qLSGGEWQRV 134 (248)
T COG4138 68 TELARHRAYLSQQQTPPFAMPVWHYLTLH----QP----DKTRTELLNDVAGALALDDKLGRS-----TNQLSGGEWQRV 134 (248)
T ss_pred hHHHHHHHHHhhccCCcchhhhhhhhhhc----Cc----hHHHHHHHHHHHhhhcccchhhhh-----hhhcCcccceee
Confidence 4566678998875543358999988864 22 345556678888889998765543 478999999999
Q ss_pred HHHHHHhh-----CC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEe
Q 008534 305 CIGNEIII-----NP--SLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (562)
Q Consensus 305 ~IAraLl~-----~P--~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~ 377 (562)
-+|...+. || ++|+||||.++||...+..+-..|.+++..|.+|||+.||++- ..+.+|++.+|+.|+++..
T Consensus 135 RLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDLNh-TLrhA~~~wLL~rG~l~~~ 213 (248)
T COG4138 135 RLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLNH-TLRHAHRAWLLKRGKLLAS 213 (248)
T ss_pred EEeEEEEEecCCCCccceeEEecCCCcchhHHHHHHHHHHHHHHHhCCcEEEEeccchhh-HHHHHHHHHHHhcCeEEee
Confidence 99988764 44 7999999999999999999999999999999999999999875 5688999999999999999
Q ss_pred cChHHHH
Q 008534 378 GKASEAM 384 (562)
Q Consensus 378 G~~~el~ 384 (562)
|..+|++
T Consensus 214 G~~~eVl 220 (248)
T COG4138 214 GRREEVL 220 (248)
T ss_pred cchhhhc
Confidence 9999875
|
|
| >cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.1e-29 Score=247.09 Aligned_cols=188 Identities=14% Similarity=0.188 Sum_probs=138.3
Q ss_pred EEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhccC
Q 008534 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKS 229 (562)
Q Consensus 150 l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~~ 229 (562)
|+++|+. .| .++.+|+++++ ++++|+||||||||||+++|.- . +|.+.....++
T Consensus 6 l~l~nfk-~~--------~~~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~~-~-----------~G~~~~~~~~~ 59 (212)
T cd03274 6 LVLENFK-SY--------AGEQVIGPFHK-----SFSAIVGPNGSGKSNVIDSMLF-V-----------FGFRASKMRQK 59 (212)
T ss_pred EEEECcc-cC--------CCCeeeccCCC-----CeEEEECCCCCCHHHHHHHHHH-H-----------hccCHHHhhhh
Confidence 5666664 33 35679999987 8999999999999999999982 2 22222111235
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHHhhCCC-----CCccHHHHHH--HHHHHHHHcCCCccccccccCcccCCCChhHHH
Q 008534 230 KIGFVTQDDVLFPHLTVKETLTYAALLRLP-----NTLTKQQKEK--RAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (562)
Q Consensus 230 ~igyV~Q~~~l~~~lTV~enl~~~~~~~~~-----~~~~~~~~~~--~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrq 302 (562)
++++++|+..+++.+|+++++.+....... .+........ ...++++.++|++..++. +..||+||||
T Consensus 60 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~-----~~~lS~G~~~ 134 (212)
T cd03274 60 KLSDLIHNSAGHPNLDSCSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKN-----ISNLSGGEKT 134 (212)
T ss_pred hHHHHhcCCCCCCCCceEEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccc-----hhhcCHHHHH
Confidence 689999999889989999987765432100 0111100000 013455667777766664 3589999999
Q ss_pred HHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcC
Q 008534 303 RVCIGNEIII----NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK 371 (562)
Q Consensus 303 Rv~IAraLl~----~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~ 371 (562)
|++||+|++. +|++++|||||+|||+.++..+.+.|+++++ +.|+|++||++ ++.+.||+|++|..
T Consensus 135 r~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~~-~~~~iivs~~~--~~~~~~d~v~~~~~ 204 (212)
T cd03274 135 LSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERTK-NAQFIVISLRN--NMFELADRLVGIYK 204 (212)
T ss_pred HHHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHcC-CCEEEEEECcH--HHHHhCCEEEEEEe
Confidence 9999999974 4799999999999999999999999999864 67899999985 46789999999974
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.6e-27 Score=238.51 Aligned_cols=185 Identities=16% Similarity=0.316 Sum_probs=130.4
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC---------------CCCCCcc--------EEEECCEe---
Q 008534 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRL---------------MEPTVGG--------SITYNDHP--- 222 (562)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l---------------~~~~~~G--------~I~i~G~~--- 222 (562)
++.++++++ |++++|+||||||||||+++|++.+ .. +.+| +|.+++.+
T Consensus 14 ~~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~-~~~~~~~~~~~v~i~~~~~~~~~ 87 (243)
T cd03272 14 DQTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLH-EGSGPSVMSAYVEIIFDNSDNRF 87 (243)
T ss_pred cCcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEe-CCCCCCCceEEEEEEEEcCCCcc
Confidence 556888887 7899999999999999999998321 11 1134 55665532
Q ss_pred -CC---hhccCcEEEEccCCCCCC-CCCHHHHHHHHHhhCCCCCccH-HHHHHHHHHHHHHcCCCccccccccCcccCCC
Q 008534 223 -YS---KSLKSKIGFVTQDDVLFP-HLTVKETLTYAALLRLPNTLTK-QQKEKRAIDVINELGLERCQDTMIGGSFVRGV 296 (562)
Q Consensus 223 -~~---~~~~~~igyV~Q~~~l~~-~lTV~enl~~~~~~~~~~~~~~-~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~L 296 (562)
+. ...++.++|++|+..+++ ..|..|...+............ .....++.++ +++.+..+. .+..|
T Consensus 88 ~~~~~~~~i~r~ig~~~~~~~l~~~~~t~~ei~~~l~~~gl~~~~~~~~~~qg~i~~l---~~l~~~~~~-----~~~~l 159 (243)
T cd03272 88 PIDKEEVRLRRTIGLKKDEYFLDKKNVTKNDVMNLLESAGFSRSNPYYIVPQGKINSL---TNMKQDEQQ-----EMQQL 159 (243)
T ss_pred CCCCCEEEEEEEEECCCCEEEECCeEcCHHHHHHHHHHcCCCCCCCcEEEEcCchHHh---hhccccccc-----ccccc
Confidence 11 124567999999888876 4577776665544322211000 0001122222 334333333 35689
Q ss_pred ChhHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEc
Q 008534 297 SGGERKRVCIGNEIII----NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG 370 (562)
Q Consensus 297 SGGqrqRv~IAraLl~----~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~ 370 (562)
|||||||++|||+|+. +|++|||||||+|||+.++..+++.|+++.+ +.|||+++|++ ++.+.||++++|.
T Consensus 160 S~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~-~~~ii~~~h~~--~~~~~~d~i~~l~ 234 (243)
T cd03272 160 SGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSD-GAQFITTTFRP--ELLEVADKFYGVK 234 (243)
T ss_pred CHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEecCH--HHHhhCCEEEEEE
Confidence 9999999999999974 5899999999999999999999999999865 78888888884 3678999999985
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.9e-27 Score=231.31 Aligned_cols=192 Identities=18% Similarity=0.177 Sum_probs=132.0
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEe-CCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCE-e-CC-
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVN-PGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDH-P-YS- 224 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~-~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~-~-~~- 224 (562)
.|+++|+. .| .+. ++|+|... +|++++|+||||||||||+++|++.++.+. .+....+.. . +.
T Consensus 5 ~i~l~nf~-~y--------~~~---~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~-~~~~~~~~~~~~~~~ 71 (213)
T cd03279 5 KLELKNFG-PF--------REE---QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKT-PRYGRQENLRSVFAP 71 (213)
T ss_pred EEEEECCc-Cc--------CCc---eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCc-cccccchhHHHHhcC
Confidence 47778776 44 122 66677644 589999999999999999999997555333 233333210 0 11
Q ss_pred hhccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHH
Q 008534 225 KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (562)
Q Consensus 225 ~~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 304 (562)
......|++++|++.... ++..+. .++.+...+.+ .+...++.+..+ ..+..||||||||+
T Consensus 72 ~~~~~~v~~~f~~~~~~~--~~~r~~----------gl~~~~~~~~~--~l~~g~l~~~l~-----~~~~~lS~G~~~r~ 132 (213)
T cd03279 72 GEDTAEVSFTFQLGGKKY--RVERSR----------GLDYDQFTRIV--LLPQGEFDRFLA-----RPVSTLSGGETFLA 132 (213)
T ss_pred CCccEEEEEEEEECCeEE--EEEEec----------CCCHHHHHHhh--hhhhcchHHHhc-----CCccccCHHHHHHH
Confidence 123456999999874311 111111 12222211111 122223333333 34578999999999
Q ss_pred HHHHHHhh----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCe
Q 008534 305 CIGNEIII----------NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGS 373 (562)
Q Consensus 305 ~IAraLl~----------~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~ 373 (562)
+|||||+. +|++|||||||++||+.+...+.+.|+++++++.|||++||++. .+...||+++++++|-
T Consensus 133 ~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~-~~~~~~~~i~~~~~~~ 210 (213)
T cd03279 133 SLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHVEE-LKERIPQRLEVIKTPG 210 (213)
T ss_pred HHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchH-HHHhhCcEEEEEecCC
Confidence 99999985 57899999999999999999999999999877899999999975 4677899999999874
|
They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini. |
| >cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.94 E-value=1e-27 Score=241.86 Aligned_cols=183 Identities=17% Similarity=0.234 Sum_probs=135.8
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCE-eCCh------hccCcEEEEccCC---------CCCCCCCH
Q 008534 183 GEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDH-PYSK------SLKSKIGFVTQDD---------VLFPHLTV 246 (562)
Q Consensus 183 Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~-~~~~------~~~~~igyV~Q~~---------~l~~~lTV 246 (562)
..+++|+||||||||||+++|++.+. +...|++.+.|. ++-. ..+..|++++|++ .+.|.+||
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~-~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV 103 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLG-ITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITV 103 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc-ccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEE
Confidence 34999999999999999999998653 233567887776 3211 1234799999985 34567899
Q ss_pred HHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccc---------------cccCcccCCCChhHHHHHHHHHHHh
Q 008534 247 KETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDT---------------MIGGSFVRGVSGGERKRVCIGNEII 311 (562)
Q Consensus 247 ~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t---------------~vg~~~~~~LSGGqrqRv~IAraLl 311 (562)
.+++.++...+.... .+....+++.++++.+++...... ...+..+..||||||||++||++|+
T Consensus 104 ~r~I~~~~~~~~~in-~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~ 182 (251)
T cd03273 104 TRQIVLGGTNKYLIN-GHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLILA 182 (251)
T ss_pred EEEEEcCCceEEEEC-CEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHHH
Confidence 998876532111000 112234678889999998611000 0112356789999999999999998
Q ss_pred ----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEc
Q 008534 312 ----INPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG 370 (562)
Q Consensus 312 ----~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~ 370 (562)
.+|++++|||||++||+.....+.+.|+++. +|.|+|++||++ ++.+.||+++-+.
T Consensus 183 ~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~-~g~~ii~iSH~~--~~~~~~d~v~~~~ 242 (251)
T cd03273 183 LLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHF-KGSQFIVVSLKE--GMFNNANVLFRTR 242 (251)
T ss_pred HhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHc-CCCEEEEEECCH--HHHHhCCEEEEEE
Confidence 5789999999999999999999999999986 488999999994 4678899998775
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.2e-26 Score=273.95 Aligned_cols=138 Identities=25% Similarity=0.368 Sum_probs=111.6
Q ss_pred CCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCcc-ccccccCcccCCCChhHHHHHHHHHHHh---hCCC
Q 008534 240 LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC-QDTMIGGSFVRGVSGGERKRVCIGNEII---INPS 315 (562)
Q Consensus 240 l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~t~vg~~~~~~LSGGqrqRv~IAraLl---~~P~ 315 (562)
.+...||.|+|.++..-.........+..+++ ++++.+||.+. .+. .+.+|||||||||+||++|+ .+|+
T Consensus 759 ~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~~l~l~q-----~~~tLSGGE~QRV~LAraL~~~~~~P~ 832 (1809)
T PRK00635 759 RYKGKNIADILEMTAYEAEKFFLDEPSIHEKI-HALCSLGLDYLPLGR-----PLSSLSGGEIQRLKLAYELLAPSKKPT 832 (1809)
T ss_pred ccCCCCHHHHHHcCHHHHHHcccChHHHHHHH-HHHHHcCCcchhhcC-----ccccCCHHHHHHHHHHHHHhhcCCCCC
Confidence 56678999999887542111111223344455 57888999764 444 34689999999999999998 5999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEc------CCeEEEecChHHHHH
Q 008534 316 LLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG------KGSLLYFGKASEAMA 385 (562)
Q Consensus 316 iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~------~G~iv~~G~~~el~~ 385 (562)
+|||||||+|||+.+...+++.|+++++.|.|||+++|++.. + ..||+|++|. +|++++.|+++++..
T Consensus 833 LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~-i-~~aDrVi~L~p~gg~~~G~iv~~Gtpeel~~ 906 (1809)
T PRK00635 833 LYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHV-V-KVADYVLELGPEGGNLGGYLLASCSPEELIH 906 (1809)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-H-HhCCEEEEEccCCCCCCCEEEEeCCHHHHHh
Confidence 999999999999999999999999998889999999999763 4 8999999996 799999999998753
|
|
| >cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-26 Score=227.65 Aligned_cols=165 Identities=17% Similarity=0.266 Sum_probs=124.3
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHH----cCCCCCCCccEEEECCEeCC-hhccCcEEEEccCC-----CCCCCC
Q 008534 175 GITGSVNPGEVLALMGPSGSGKTTLLNLLS----GRLMEPTVGGSITYNDHPYS-KSLKSKIGFVTQDD-----VLFPHL 244 (562)
Q Consensus 175 ~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~----G~l~~~~~~G~I~i~G~~~~-~~~~~~igyV~Q~~-----~l~~~l 244 (562)
..++++.+| +++|+||||||||||+++|. |... +.+|.+..+...+. ...+..|++++|++ .....+
T Consensus 15 ~~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~--~~~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~ 91 (204)
T cd03240 15 RSEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELP--PNSKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSL 91 (204)
T ss_pred ceEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCC--cccccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEh
Confidence 344667788 99999999999999999995 7543 33455542222222 23356799999998 445556
Q ss_pred CHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHH------HHHHHHHhhCCCEEE
Q 008534 245 TVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR------VCIGNEIIINPSLLF 318 (562)
Q Consensus 245 TV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqR------v~IAraLl~~P~iLl 318 (562)
|+.||+.+.. .. .+.+.+ + ..++.||+||+|| ++|||+|+.+|++++
T Consensus 92 ~~~~~~~~~~---------~~----~~~~~~---------~-----~~~~~LS~G~~~~~~la~rlala~al~~~p~ill 144 (204)
T cd03240 92 AILENVIFCH---------QG----ESNWPL---------L-----DMRGRCSGGEKVLASLIIRLALAETFGSNCGILA 144 (204)
T ss_pred hHhhceeeec---------hH----HHHHHH---------h-----cCccccCccHHHHHHHHHHHHHHHHhccCCCEEE
Confidence 8888886531 11 122222 2 2346899999996 789999999999999
Q ss_pred EeCCCCCCCHHHHH-HHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcC
Q 008534 319 LDEPTSGLDSTTAL-RIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGK 371 (562)
Q Consensus 319 LDEPTsgLD~~~~~-~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~ 371 (562)
|||||++||+..+. .+.+.|+++.++ |.|||++||++. ....||++++|.+
T Consensus 145 lDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~--~~~~~d~i~~l~~ 197 (204)
T cd03240 145 LDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEE--LVDAADHIYRVEK 197 (204)
T ss_pred EcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHH--HHhhCCEEEEEee
Confidence 99999999999999 999999999766 889999999965 3567999999964
|
The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence. |
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.1e-27 Score=242.33 Aligned_cols=204 Identities=25% Similarity=0.313 Sum_probs=162.4
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
.|+++||.|.|.. ...-+..||++|+.||++-|+|.||||||||+++|.|. +. |.+|+|++||+|++.
T Consensus 322 ~lelrnvrfay~~-------~~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL-~~-PqsG~I~ldg~pV~~e~l 392 (546)
T COG4615 322 TLELRNVRFAYQD-------NAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGL-YQ-PQSGEILLDGKPVSAEQL 392 (546)
T ss_pred ceeeeeeeeccCc-------ccceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcc-cC-CCCCceeECCccCCCCCH
Confidence 6999999999832 22568999999999999999999999999999999995 44 458999999999963
Q ss_pred -hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHH
Q 008534 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (562)
Q Consensus 226 -~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 304 (562)
++|+-++-||-|..+|+.+-- ++.. .....++..++.+.|.+...-.=|+-..-.||.|||||+
T Consensus 393 edYR~LfSavFsDyhLF~~ll~------------~e~~---as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRl 457 (546)
T COG4615 393 EDYRKLFSAVFSDYHLFDQLLG------------PEGK---ASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRL 457 (546)
T ss_pred HHHHHHHHHHhhhHhhhHhhhC------------CccC---CChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHH
Confidence 578888889999999975211 1111 112345566777666543222112222346999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH-HHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEec
Q 008534 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI-AEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (562)
Q Consensus 305 ~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l-~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G 378 (562)
++-.||+-+-+|+++||=-+--||.-++.+.+.+--+ ++.|+||+.||||-. -|..+||++.+.+|++++.-
T Consensus 458 All~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~--YF~~ADrll~~~~G~~~e~t 530 (546)
T COG4615 458 ALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDH--YFIHADRLLEMRNGQLSELT 530 (546)
T ss_pred HHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCch--hhhhHHHHHHHhcCceeecc
Confidence 9999999999999999999999999999998877654 567999999999943 58899999999999998864
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.4e-25 Score=236.02 Aligned_cols=222 Identities=22% Similarity=0.372 Sum_probs=185.4
Q ss_pred ceeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeC-C-
Q 008534 147 PIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPY-S- 224 (562)
Q Consensus 147 ~~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~-~- 224 (562)
.+.|+++|++..- ..+.+.+++|||+|+.||+++|.|-.|-|-+-|+.+|+|.. . +.+|+|.++|+++ .
T Consensus 255 ~~vL~V~~L~v~~-------~~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr-~-~~~G~I~l~G~~v~~~ 325 (501)
T COG3845 255 EVVLEVEDLSVKD-------RRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLR-K-PASGRILLNGKDVLGR 325 (501)
T ss_pred CeEEEEeeeEeec-------CCCCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCC-c-cCCceEEECCEecccc
Confidence 4579999999752 22357899999999999999999999999999999999954 3 3359999999996 2
Q ss_pred --h--hccCcEEEEccCC---CCCCCCCHHHHHHHHHhhCCC----CCccHHHHHHHHHHHHHHcCCCccccccccCccc
Q 008534 225 --K--SLKSKIGFVTQDD---VLFPHLTVKETLTYAALLRLP----NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFV 293 (562)
Q Consensus 225 --~--~~~~~igyV~Q~~---~l~~~lTV~enl~~~~~~~~~----~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~ 293 (562)
. ..+..++|||+|. -+.+.+|+.||+.+....+.| .-+......+.+.++++.++....-. ....
T Consensus 326 ~~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~----~~~a 401 (501)
T COG3845 326 LSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSP----DAPA 401 (501)
T ss_pred CCHHHHHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCC----Ccch
Confidence 1 2345699999986 467789999999987643211 12455667778899999998863211 1235
Q ss_pred CCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCe
Q 008534 294 RGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGS 373 (562)
Q Consensus 294 ~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~ 373 (562)
+.||||++||+-+||+|.++|++|++.+||.|||..+...|.+.|.++++.|+.|++++-+++ +++.+||||.||.+|+
T Consensus 402 ~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLD-Eil~lsDrIaVi~~Gr 480 (501)
T COG3845 402 RSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLD-EILELSDRIAVIYEGR 480 (501)
T ss_pred hhcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHH-HHHHhhheeeeeeCCc
Confidence 789999999999999999999999999999999999999999999999999999999999976 5899999999999999
Q ss_pred EEEecChHH
Q 008534 374 LLYFGKASE 382 (562)
Q Consensus 374 iv~~G~~~e 382 (562)
++...++++
T Consensus 481 i~~~~~~~~ 489 (501)
T COG3845 481 IVGIVPPEE 489 (501)
T ss_pred eeccccccc
Confidence 999887765
|
|
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.7e-26 Score=249.12 Aligned_cols=196 Identities=28% Similarity=0.456 Sum_probs=155.3
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhc
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~ 227 (562)
..|+++||+..- ......|++.++.|++|+.+.|.||||||||||+|+|+|. . |--+|+|.+- .
T Consensus 391 ~~i~~~nl~l~~-------p~~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGL-W-P~g~G~I~~P-------~ 454 (604)
T COG4178 391 HGITLENLSLRT-------PDGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGL-W-PWGSGRISMP-------A 454 (604)
T ss_pred ceeEEeeeeEEC-------CCCCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhcc-C-ccCCCceecC-------C
Confidence 479999999864 1345899999999999999999999999999999999995 4 2235776543 1
Q ss_pred cCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCcccccccc-CcccCCCChhHHHHHHH
Q 008534 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIG-GSFVRGVSGGERKRVCI 306 (562)
Q Consensus 228 ~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg-~~~~~~LSGGqrqRv~I 306 (562)
-..+-|+||.|.+... |.+|-|.|+.... . -.++.+.++|.++||++..+..-. ++.-+.||+||||||++
T Consensus 455 ~~~~lflpQ~PY~p~G-tLre~l~YP~~~~---~----~~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlaf 526 (604)
T COG4178 455 DSALLFLPQRPYLPQG-TLREALCYPNAAP---D----FSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAF 526 (604)
T ss_pred CCceEEecCCCCCCCc-cHHHHHhCCCCCC---C----CChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHH
Confidence 2348899999998765 9999999864211 1 234457788888999876655322 12345699999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEc
Q 008534 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG 370 (562)
Q Consensus 307 AraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~ 370 (562)
||.|+++|++++|||.|++||+.++..+++.|++-. .+.|||-|.|++. +..+.++.+-+.
T Consensus 527 ARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~l-p~~tvISV~Hr~t--l~~~h~~~l~l~ 587 (604)
T COG4178 527 ARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEEL-PDATVISVGHRPT--LWNFHSRQLELL 587 (604)
T ss_pred HHHHHcCCCEEEEecchhccChHHHHHHHHHHHhhC-CCCEEEEeccchh--hHHHHhhheeec
Confidence 999999999999999999999999999999998743 3799999999965 456666655543
|
|
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.4e-25 Score=255.38 Aligned_cols=126 Identities=29% Similarity=0.453 Sum_probs=105.9
Q ss_pred CCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCc-cccccccCcccCCCChhHHHHHHHHHHHhhCC---CEEEE
Q 008534 244 LTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVRGVSGGERKRVCIGNEIIINP---SLLFL 319 (562)
Q Consensus 244 lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P---~iLlL 319 (562)
|||.|++.|..... + ..+..+.++.+||.. ..+. .+..||||||||+.||++|+.+| +++||
T Consensus 792 ltv~E~l~~f~~~~------~---i~~~l~~L~~vgL~~l~l~~-----~~~tLSgGEkQRl~LAraL~~~p~~~~llIL 857 (943)
T PRK00349 792 MTVEEALEFFEAIP------K---IARKLQTLVDVGLGYIKLGQ-----PATTLSGGEAQRVKLAKELSKRSTGKTLYIL 857 (943)
T ss_pred CcHHHHHHHHHhch------h---hhHHHHHHHHCCCCcccccC-----CcccCCHHHHHHHHHHHHHhcCCCCCeEEEE
Confidence 78889888864321 1 123457889999975 2333 35689999999999999999999 99999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEE------cCCeEEEecChHHHHH
Q 008534 320 DEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL------GKGSLLYFGKASEAMA 385 (562)
Q Consensus 320 DEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL------~~G~iv~~G~~~el~~ 385 (562)
||||+|||+.....+++.|+++.+.|.|||+++|++.. ...||+|++| ++|++++.|+++++..
T Consensus 858 DEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~~--i~~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~~ 927 (943)
T PRK00349 858 DEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLDV--IKTADWIIDLGPEGGDGGGEIVATGTPEEVAK 927 (943)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHH--HHhCCEEEEecCCcCCCCCEEEEeCCHHHHHh
Confidence 99999999999999999999998789999999999753 4679999999 7999999999998753
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=4e-25 Score=235.44 Aligned_cols=215 Identities=24% Similarity=0.351 Sum_probs=144.8
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhc
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~ 227 (562)
..+.++|+++.| .++.+++|++|++.+|+.++|+|||||||||+|++|.|+..+.+..=.++.-...+....
T Consensus 74 ~dvk~~sls~s~--------~g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~e~~ps~ 145 (614)
T KOG0927|consen 74 RDVKIESLSLSF--------HGVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSREIEPSE 145 (614)
T ss_pred ccceeeeeeecc--------CCceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcccCCCch
Confidence 368999999987 467899999999999999999999999999999999998753232222222222221100
Q ss_pred cCcEEEEccCCCCCCCCCHHHHHHHHHh-hCC----------------CCCccHHHHHHHHHHHHHHcCCC-cccccccc
Q 008534 228 KSKIGFVTQDDVLFPHLTVKETLTYAAL-LRL----------------PNTLTKQQKEKRAIDVINELGLE-RCQDTMIG 289 (562)
Q Consensus 228 ~~~igyV~Q~~~l~~~lTV~enl~~~~~-~~~----------------~~~~~~~~~~~~v~~~l~~lgL~-~~~~t~vg 289 (562)
...+-+|.+. .-..+.-+.+... +.. ...+..+..+.++..++..+|.. +..+.
T Consensus 146 ~~av~~v~~~-----~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k--- 217 (614)
T KOG0927|consen 146 KQAVQAVVME-----TDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDK--- 217 (614)
T ss_pred HHHHHHHhhh-----hHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHH---
Confidence 0001111100 0011111111100 000 00112233444566666666653 33333
Q ss_pred CcccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEE
Q 008534 290 GSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL 369 (562)
Q Consensus 290 ~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL 369 (562)
.+.+||||+|.|++|||+|+.+|++|+|||||++||+.+..-+-+.|.+..+ .++|+++|.-+ .+-..|.+|+-|
T Consensus 218 --~~~~~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~--~~lVi~sh~QD-fln~vCT~Ii~l 292 (614)
T KOG0927|consen 218 --KVKDLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDR--IILVIVSHSQD-FLNGVCTNIIHL 292 (614)
T ss_pred --HhhccCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccC--ceEEEEecchh-hhhhHhhhhhee
Confidence 4578999999999999999999999999999999999999888888876532 28999999854 477899999999
Q ss_pred cCCe-EEEecChHHH
Q 008534 370 GKGS-LLYFGKASEA 383 (562)
Q Consensus 370 ~~G~-iv~~G~~~el 383 (562)
++++ +.|.|+.+..
T Consensus 293 ~~kkl~~y~Gnydqy 307 (614)
T KOG0927|consen 293 DNKKLIYYEGNYDQY 307 (614)
T ss_pred cccceeeecCCHHHH
Confidence 9999 6677776654
|
|
| >COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.3e-25 Score=213.02 Aligned_cols=229 Identities=21% Similarity=0.330 Sum_probs=174.7
Q ss_pred EEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--CCccEEEECCEeCC---
Q 008534 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP--TVGGSITYNDHPYS--- 224 (562)
Q Consensus 150 l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~--~~~G~I~i~G~~~~--- 224 (562)
|.++|++..+.. +.+...++++||+++..||+-++||.||||||-..|+|+|...+. .+.-+..+++.++-
T Consensus 4 LDIrnL~IE~~T----sqG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~ 79 (330)
T COG4170 4 LDIRNLTIEFKT----SQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLS 79 (330)
T ss_pred ccccceEEEEec----CCCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCC
Confidence 567788777632 334567999999999999999999999999999999999965432 11233455555542
Q ss_pred -hh----ccCcEEEEccCCC--CCCCCCHHHHHHHHHhhCCCCCc---cHHHHHHHHHHHHHHcCCCccccccccCcccC
Q 008534 225 -KS----LKSKIGFVTQDDV--LFPHLTVKETLTYAALLRLPNTL---TKQQKEKRAIDVINELGLERCQDTMIGGSFVR 294 (562)
Q Consensus 225 -~~----~~~~igyV~Q~~~--l~~~lTV~enl~~~~~~~~~~~~---~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~ 294 (562)
+. .-+.|+++||+|. |-|.-+|...|.-.......++. .-..++.++.+++..+|+.+..|-+ ..++.
T Consensus 80 Pr~RRk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM--~SYP~ 157 (330)
T COG4170 80 PRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIM--RSYPY 157 (330)
T ss_pred hHHhhhhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHH--HhCcc
Confidence 11 2245889999985 44444443333222111111110 0123456788999999999877643 56788
Q ss_pred CCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCcEEEEEecCCChHHHhcCCEEEEEcCCe
Q 008534 295 GVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGS 373 (562)
Q Consensus 295 ~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~ 373 (562)
+|--||-|+|.||.|++.+|++||.||||+++||.++.+|..+|.++.+ +|.||++++||+.. +-+.||+|-||.-|+
T Consensus 158 ElTeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~~-is~W~d~i~VlYCGQ 236 (330)
T COG4170 158 ELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQM-ISQWADKINVLYCGQ 236 (330)
T ss_pred hhccCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHHH-HHHHhhheEEEEecc
Confidence 9999999999999999999999999999999999999999999999975 48999999999764 778999999999999
Q ss_pred EEEecChHHHHH
Q 008534 374 LLYFGKASEAMA 385 (562)
Q Consensus 374 iv~~G~~~el~~ 385 (562)
-++.++.+++++
T Consensus 237 ~~ESa~~e~l~~ 248 (330)
T COG4170 237 TVESAPSEELVT 248 (330)
T ss_pred cccccchhHHhc
Confidence 999999999874
|
|
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.9e-24 Score=248.82 Aligned_cols=124 Identities=27% Similarity=0.464 Sum_probs=101.2
Q ss_pred CCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCcc-ccccccCcccCCCChhHHHHHHHHHHHhh---CCCEEEE
Q 008534 244 LTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC-QDTMIGGSFVRGVSGGERKRVCIGNEIII---NPSLLFL 319 (562)
Q Consensus 244 lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~t~vg~~~~~~LSGGqrqRv~IAraLl~---~P~iLlL 319 (562)
|||.|.+.|..... . ..+..++++.+||... .+. .+.+|||||+|||.||++|+. +|+++||
T Consensus 790 ~tv~e~~~f~~~~~---~------i~~~l~~L~~~gL~~l~l~~-----~~~tLSgGe~QRl~LA~aL~~~~~~p~llIL 855 (924)
T TIGR00630 790 MTVEEAYEFFEAVP---S------ISRKLQTLCDVGLGYIKLGQ-----PATTLSGGEAQRIKLAKELSKRSTGRTLYIL 855 (924)
T ss_pred CcHHHHHHHHHhcc---c------hhHHHHHHHHcCCCchhhcC-----ccccCCHHHHHHHHHHHHHhhcCCCCCEEEE
Confidence 56677766654321 0 1134567888898642 333 357899999999999999997 5999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEE------cCCeEEEecChHHH
Q 008534 320 DEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL------GKGSLLYFGKASEA 383 (562)
Q Consensus 320 DEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL------~~G~iv~~G~~~el 383 (562)
||||+|||+.....+++.|+++.+.|.|||+++|++.. + ..||+|++| ++|++++.|+++++
T Consensus 856 DEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~~-i-~~aD~ii~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 856 DEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLDV-I-KTADYIIDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-H-HhCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence 99999999999999999999998789999999999753 4 679999999 79999999998875
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.2e-25 Score=235.33 Aligned_cols=202 Identities=22% Similarity=0.330 Sum_probs=156.6
Q ss_pred ceeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChh
Q 008534 147 PIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS 226 (562)
Q Consensus 147 ~~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~ 226 (562)
++.+.+.||+|.|. ++..++++++|-|..++.+|+|||||+|||||||++.|.+. +..|.|.-.-
T Consensus 387 ~pvi~~~nv~F~y~-------~~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~--p~~G~vs~~~------ 451 (614)
T KOG0927|consen 387 PPVIMVQNVSFGYS-------DNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQ--PTIGMVSRHS------ 451 (614)
T ss_pred CCeEEEeccccCCC-------CcchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccc--cccccccccc------
Confidence 45799999999983 12379999999999999999999999999999999999664 4468764322
Q ss_pred ccCcEEEEccCC--CCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHH
Q 008534 227 LKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (562)
Q Consensus 227 ~~~~igyV~Q~~--~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 304 (562)
..++++..|+. .+--+.++-|++.-.. ++....+.+..++.++||....... ..++||+|||.||
T Consensus 452 -H~~~~~y~Qh~~e~ldl~~s~le~~~~~~--------~~~~~~e~~r~ilgrfgLtgd~q~~----p~~~LS~Gqr~rV 518 (614)
T KOG0927|consen 452 -HNKLPRYNQHLAEQLDLDKSSLEFMMPKF--------PDEKELEEMRSILGRFGLTGDAQVV----PMSQLSDGQRRRV 518 (614)
T ss_pred -cccchhhhhhhHhhcCcchhHHHHHHHhc--------cccchHHHHHHHHHHhCCCcccccc----chhhcccccchhH
Confidence 23355555542 3333567777765321 1123445677899999998544432 4579999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeE-EEecCh
Q 008534 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL-LYFGKA 380 (562)
Q Consensus 305 ~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~i-v~~G~~ 380 (562)
.+|+.++..|.||+|||||+|||..+...+-+.|.++ .-+||++|||.. .+-+.+++|.+..+|.+ .+.|..
T Consensus 519 lFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~---~Ggvv~vSHDfr-lI~qVaeEi~~c~~~~~~~~~G~i 591 (614)
T KOG0927|consen 519 LFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEF---PGGVVLVSHDFR-LISQVAEEIWVCENGTVTKWDGDI 591 (614)
T ss_pred HHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhcc---CCceeeeechhh-HHHHHHHHhHhhccCceeecCccH
Confidence 9999999999999999999999999998888888775 348999999965 47788999999998865 555654
|
|
| >cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.1e-23 Score=203.43 Aligned_cols=168 Identities=20% Similarity=0.211 Sum_probs=121.4
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEE--CCEeCCh-----hccCcEEEEccCCCCCCCC
Q 008534 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITY--NDHPYSK-----SLKSKIGFVTQDDVLFPHL 244 (562)
Q Consensus 172 iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i--~G~~~~~-----~~~~~igyV~Q~~~l~~~l 244 (562)
-++++++++.+| +++|+||||||||||+.+|...+ .|.... .|..+.. .....|.+++|+..+++
T Consensus 11 ~~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l-----~~~~~~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~-- 82 (198)
T cd03276 11 CHRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGL-----GGKASDTNRGSSLKDLIKDGESSAKITVTLKNQGLDA-- 82 (198)
T ss_pred ceeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHh-----cCCcccccccccHHHHhhCCCCeEEEEEEEEcCCccC--
Confidence 346788888888 88999999999999999997422 122111 1221111 11345888888876664
Q ss_pred CHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHH----hhCCCEEEEe
Q 008534 245 TVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEI----IINPSLLFLD 320 (562)
Q Consensus 245 TV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraL----l~~P~iLlLD 320 (562)
| . ... .....+.++++. .+..++ .++.||+|||||++||+|| +.+|+++|||
T Consensus 83 ----~--------~---~~~-~~~~~~~~~l~~---~~~~~~-----~~~~lS~G~k~r~~ia~al~~~~~~~p~illlD 138 (198)
T cd03276 83 ----N--------P---LCV-LSQDMARSFLTS---NKAAVR-----DVKTLSGGERSFSTVCLLLSLWEVMESPFRCLD 138 (198)
T ss_pred ----C--------c---CCH-HHHHHHHHHhcc---ccccCC-----cccccChhHHHHHHHHHHHHHhcccCCCEEEec
Confidence 1 0 011 113456667765 333443 4578999999999999999 5899999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHC---CcEEEEEecCCChHHHhcCCEEEEEcCCe
Q 008534 321 EPTSGLDSTTALRIVQMLQDIAEA---GKTVVTTIHQPSSRLFHKFDKLILLGKGS 373 (562)
Q Consensus 321 EPTsgLD~~~~~~i~~~L~~l~~~---g~Tvii~tH~~~~~i~~~~D~i~vL~~G~ 373 (562)
|||+|||+.....+.+.|+++.+. +.|||+++|++.. +. .+|+|.+|..++
T Consensus 139 EP~~glD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~~~-i~-~~d~v~~~~~~~ 192 (198)
T cd03276 139 EFDVFMDMVNRKISTDLLVKEAKKQPGRQFIFITPQDISG-LA-SSDDVKVFRMKD 192 (198)
T ss_pred CcccccCHHHHHHHHHHHHHHHhcCCCcEEEEEECCcccc-cc-cccceeEEEecC
Confidence 999999999999999999998653 3689999999765 44 459999998754
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.6e-22 Score=217.09 Aligned_cols=204 Identities=21% Similarity=0.346 Sum_probs=156.9
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhc
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~ 227 (562)
..++|++|+..- |..+..+++|+||+|+.|+-+.|.||||||||+|+++|+|. + |..+|.+..-.+.-.
T Consensus 432 n~i~~e~v~l~t------Pt~g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggL-W-p~~~G~l~k~~~~~~--- 500 (659)
T KOG0060|consen 432 NAIEFEEVSLST------PTNGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGL-W-PSTGGKLTKPTDGGP--- 500 (659)
T ss_pred ceEEeeeeeecC------CCCCceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcc-c-ccCCCeEEecccCCC---
Confidence 479999999863 33356788999999999999999999999999999999984 5 345898875433221
Q ss_pred cCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCcccccc------ccCcccCCCChhHH
Q 008534 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTM------IGGSFVRGVSGGER 301 (562)
Q Consensus 228 ~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~------vg~~~~~~LSGGqr 301 (562)
+.+-||||.|.+-.. |.||-+.|....-.+ ..+...++++...|+.++|.+..+.. +--.....||+||+
T Consensus 501 -~~lfflPQrPYmt~G-TLRdQvIYP~~~~~~--~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEq 576 (659)
T KOG0060|consen 501 -KDLFFLPQRPYMTLG-TLRDQVIYPLKAEDM--DSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQ 576 (659)
T ss_pred -CceEEecCCCCcccc-chhheeeccCccccc--cccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHH
Confidence 458899999987654 999999987321111 11222344566677777666544322 11123356999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcC
Q 008534 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK 371 (562)
Q Consensus 302 qRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~ 371 (562)
||++.||-+.++|++-||||.||++|...+..+.+.+++ .|.|.|-|.|+.+ +.++-|.++-|+.
T Consensus 577 QRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~---~giT~iSVgHRkS--L~kfHd~~L~~~g 641 (659)
T KOG0060|consen 577 QRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCRE---MGITFISVGHRKS--LWKFHDYVLRMDG 641 (659)
T ss_pred HHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHH---cCCeEEEeccHHH--HHhhhhEEEEecC
Confidence 999999999999999999999999999999999988875 4899999999975 5666788888875
|
|
| >cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.6e-23 Score=210.92 Aligned_cols=179 Identities=17% Similarity=0.225 Sum_probs=117.7
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEe-C-C---------hhccCcEEEEccCCCC-CCCCCHHH
Q 008534 181 NPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP-Y-S---------KSLKSKIGFVTQDDVL-FPHLTVKE 248 (562)
Q Consensus 181 ~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~-~-~---------~~~~~~igyV~Q~~~l-~~~lTV~e 248 (562)
.++ +++|+||||||||||+++|++.+. +. .|.+..++.. + . ....-.+.|..|++.. +-..++.+
T Consensus 21 ~~~-~~~i~G~NGsGKStll~ai~~~l~-~~-~~~~r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~~ 97 (247)
T cd03275 21 FDR-FTCIIGPNGSGKSNLMDAISFVLG-EK-SSHLRSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTFRRIITG 97 (247)
T ss_pred CCC-eEEEECCCCCCHHHHHHHHHHHhC-CC-cccccccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEEEEEEEC
Confidence 344 999999999999999999998654 22 4555443321 0 0 0111123444444321 10112222
Q ss_pred HHH-HHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccc---------cccC--------cccCCCChhHHHHHHHHHHH
Q 008534 249 TLT-YAALLRLPNTLTKQQKEKRAIDVINELGLERCQDT---------MIGG--------SFVRGVSGGERKRVCIGNEI 310 (562)
Q Consensus 249 nl~-~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t---------~vg~--------~~~~~LSGGqrqRv~IAraL 310 (562)
... |.. . ....+ ...+.++++.+|+...... .+.+ ..+..||||||||++||+++
T Consensus 98 ~~~~~~i--n-gk~~s----~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al 170 (247)
T cd03275 98 GSSSYRI--N-GKVVS----LKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLF 170 (247)
T ss_pred CceEEEE--C-CEEec----HHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHH
Confidence 111 110 0 01111 2345678888888532111 1111 12378999999999999999
Q ss_pred hhC----CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcC
Q 008534 311 IIN----PSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK 371 (562)
Q Consensus 311 l~~----P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~ 371 (562)
+.+ |+++||||||+|||+..+..+.+.|++++++|.|||++||++. +...||++++|..
T Consensus 171 ~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~~--~~~~~d~i~~~~~ 233 (247)
T cd03275 171 AIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKEE--FFSKADALVGVYR 233 (247)
T ss_pred HHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCHH--HHhhCCeEEEEEe
Confidence 875 8999999999999999999999999999877899999999953 5688999999864
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.1e-22 Score=212.90 Aligned_cols=174 Identities=27% Similarity=0.374 Sum_probs=134.7
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHHHHH
Q 008534 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLT 251 (562)
Q Consensus 172 iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~~~igyV~Q~~~l~~~lTV~enl~ 251 (562)
-|.-=.++|..||+++++||||-||||++++|+|.+. |++|. .. .-+|+|=||--.--...||.+.|.
T Consensus 356 ~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ik--Pdeg~----~~------~~~vSyKPQyI~~~~~gtV~~~l~ 423 (591)
T COG1245 356 KLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIK--PDEGS----EE------DLKVSYKPQYISPDYDGTVEDLLR 423 (591)
T ss_pred EEEecCCeeecceEEEEECCCCcchHHHHHHHhcccc--CCCCC----Cc------cceEeecceeecCCCCCcHHHHHH
Confidence 3444455667788999999999999999999999664 44675 11 224888888643323579999887
Q ss_pred HHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 008534 252 YAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTA 331 (562)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~ 331 (562)
-........ .-...++++-|.|++..+..+ .+|||||.|||+||.+|.++++|++||||++.||.+.+
T Consensus 424 ~~~~~~~~~-------s~~~~ei~~pl~l~~i~e~~v-----~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR 491 (591)
T COG1245 424 SAIRSAFGS-------SYFKTEIVKPLNLEDLLERPV-----DELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQR 491 (591)
T ss_pred Hhhhhhccc-------chhHHhhcCccchHHHHhccc-----ccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHH
Confidence 554321111 112346777888888777654 68999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEc
Q 008534 332 LRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLG 370 (562)
Q Consensus 332 ~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~ 370 (562)
..+-+.+++...+ ++|.+++-||... +--++||++|.+
T Consensus 492 ~~vakvIRR~~e~~~kta~vVdHDi~~-~dyvsDr~ivF~ 530 (591)
T COG1245 492 IIVAKVIRRFIENNEKTALVVDHDIYM-IDYVSDRLIVFE 530 (591)
T ss_pred HHHHHHHHHHHhhcCceEEEEecceeh-hhhhhceEEEEe
Confidence 9999999999864 7899999999763 444689998874
|
|
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.3e-23 Score=218.30 Aligned_cols=203 Identities=23% Similarity=0.283 Sum_probs=143.9
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhc
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~ 227 (562)
..|...+++..| +.+.+|++-++++..|..++|+|+||+|||||||+|+. |.| .+.++..+.
T Consensus 79 ~Di~~~~fdLa~--------G~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~--------~~v--~~f~veqE~ 140 (582)
T KOG0062|consen 79 KDIHIDNFDLAY--------GGKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN--------GQV--SGFHVEQEV 140 (582)
T ss_pred cceeeeeeeeee--------cchhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh--------cCc--CccCchhhe
Confidence 367888888887 47889999999999999999999999999999999994 222 233333333
Q ss_pred cCcEEEEccC-CCCCCCCCHHHHHHHHHhhCCCCCccHH-HHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHH
Q 008534 228 KSKIGFVTQD-DVLFPHLTVKETLTYAALLRLPNTLTKQ-QKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC 305 (562)
Q Consensus 228 ~~~igyV~Q~-~~l~~~lTV~enl~~~~~~~~~~~~~~~-~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ 305 (562)
+. .+++-. ..+-.++.+.+-|.--.. +... ..++....+|..+|..+.... .+.++||||-|-|++
T Consensus 141 ~g--~~t~~~~~~l~~D~~~~dfl~~e~~------l~~~~~l~ei~~~~L~glGFt~emq~----~pt~slSGGWrMrla 208 (582)
T KOG0062|consen 141 RG--DDTEALQSVLESDTERLDFLAEEKE------LLAGLTLEEIYDKILAGLGFTPEMQL----QPTKSLSGGWRMRLA 208 (582)
T ss_pred ec--cchHHHhhhhhccHHHHHHHHhhhh------hhccchHHHHHHHHHHhCCCCHHHHh----ccccccCcchhhHHH
Confidence 21 122221 123333333333321111 1111 223333347888888754332 345789999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeE-EEecChHHHH
Q 008534 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL-LYFGKASEAM 384 (562)
Q Consensus 306 IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~i-v~~G~~~el~ 384 (562)
|||||..+|+||||||||+.||..+..-+.+.|..+ +.|+|+|||| +.-+-..|..|+-+++-++ .|.|+.++..
T Consensus 209 LARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~---~~T~liVSHD-r~FLn~V~tdIIH~~~~kL~~YkGN~~~Fv 284 (582)
T KOG0062|consen 209 LARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTW---KITSLIVSHD-RNFLNTVCTDIIHLENLKLDYYKGNYSQFV 284 (582)
T ss_pred HHHHHhcCCCEEeecCCcccchhHHHHHHHHHHhhC---CceEEEEecc-HHHHHHHHHHHHHHhhhhhhhhcCcHHHHH
Confidence 999999999999999999999999999988888875 4799999999 4446678888888887666 5677766543
|
|
| >KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.1e-21 Score=187.34 Aligned_cols=210 Identities=23% Similarity=0.303 Sum_probs=159.2
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh--
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~-- 225 (562)
..|++.++.|+|+. ..+++-|+|+.++.|....++|.||||||||||+|+|.-. .-.|.|.++|.+.-.
T Consensus 12 ~aievsgl~f~y~~-------~dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhm--v~~~~v~VlgrsaFhDt 82 (291)
T KOG2355|consen 12 FAIEVSGLQFKYKV-------SDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHM--VGGGVVQVLGRSAFHDT 82 (291)
T ss_pred ceEEEeccEEeccc-------CCceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCccc--ccCCeEEEcCcCccccc
Confidence 36999999999942 3489999999999999999999999999999999999533 235899999976421
Q ss_pred -------------hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcc
Q 008534 226 -------------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSF 292 (562)
Q Consensus 226 -------------~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~ 292 (562)
+|.+.+++--+-| +-.++++.+.| |+... ... ++-+.+++.+.++-.. .
T Consensus 83 ~l~~Sgdl~YLGgeW~~~~~~agevp-lq~D~sae~mi-fgV~g-----~dp----~Rre~LI~iLDIdl~W-------R 144 (291)
T KOG2355|consen 83 SLESSGDLSYLGGEWSKTVGIAGEVP-LQGDISAEHMI-FGVGG-----DDP----ERREKLIDILDIDLRW-------R 144 (291)
T ss_pred cccccCceeEeccccccccccccccc-ccccccHHHHH-hhccC-----CCh----hHhhhhhhheeccceE-------E
Confidence 2344444433222 23356766544 44311 111 2334566666654221 2
Q ss_pred cCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCcEEEEEecCCChHHHhcCCEEEEEcC
Q 008534 293 VRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGK 371 (562)
Q Consensus 293 ~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~Tvii~tH~~~~~i~~~~D~i~vL~~ 371 (562)
.+.+|-|||+||.|++-|++.-++|+|||-|--||..++..+++.|++-.+ +|.|||..||..+- +..-..+++.|++
T Consensus 145 mHkvSDGqrRRVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFDG-Le~Wpthl~yi~~ 223 (291)
T KOG2355|consen 145 MHKVSDGQRRRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDG-LETWPTHLVYIKS 223 (291)
T ss_pred EeeccccchhhhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccc-hhhcchhEEEecC
Confidence 367999999999999999999999999999999999999999999998875 48999999998764 6678899999999
Q ss_pred CeEEEecChHHHHH
Q 008534 372 GSLLYFGKASEAMA 385 (562)
Q Consensus 372 G~iv~~G~~~el~~ 385 (562)
|+++..-+.+++.+
T Consensus 224 Gkl~~~l~~~~i~e 237 (291)
T KOG2355|consen 224 GKLVDNLKYQKIKE 237 (291)
T ss_pred Ceeeeccccchhhh
Confidence 99998655555433
|
|
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.7e-21 Score=202.44 Aligned_cols=192 Identities=27% Similarity=0.418 Sum_probs=148.9
Q ss_pred ceeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChh
Q 008534 147 PIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS 226 (562)
Q Consensus 147 ~~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~ 226 (562)
|+.|-+.||+|.|+ +.++.+++++|-|.--..+|||||||.||||||++|.|.+. | ..|+.. +.
T Consensus 584 PPvLGlH~VtFgy~-------gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~-P-~~GE~R-------Kn 647 (807)
T KOG0066|consen 584 PPVLGLHDVTFGYP-------GQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLD-P-NDGELR-------KN 647 (807)
T ss_pred CCeeecccccccCC-------CCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCC-C-Ccchhh-------cc
Confidence 56799999999883 36789999999999999999999999999999999999764 3 457543 33
Q ss_pred ccCcEEEEccCC--CCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHH
Q 008534 227 LKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (562)
Q Consensus 227 ~~~~igyV~Q~~--~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 304 (562)
.|-+||+..|+. .|-..-|.-|.|.-... + +. ..+...|-.+||...++|+ .+..||||||-||
T Consensus 648 hrL~iG~FdQh~~E~L~~Eetp~EyLqr~FN--l----py----q~ARK~LG~fGL~sHAHTi----kikdLSGGQKaRV 713 (807)
T KOG0066|consen 648 HRLRIGWFDQHANEALNGEETPVEYLQRKFN--L----PY----QEARKQLGTFGLASHAHTI----KIKDLSGGQKARV 713 (807)
T ss_pred ceeeeechhhhhHHhhccccCHHHHHHHhcC--C----Ch----HHHHHHhhhhhhhhccceE----eeeecCCcchHHH
Confidence 345699998874 34444577776653322 2 22 2345678889999888885 4678999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCC
Q 008534 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKG 372 (562)
Q Consensus 305 ~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G 372 (562)
++|.--+..|+||||||||++||.++...+-+.|+++ .-.|||++||-.- +.+.--.++|+.+-
T Consensus 714 alaeLal~~PDvlILDEPTNNLDIESIDALaEAIney---~GgVi~VsHDeRL-i~eT~C~LwVvE~Q 777 (807)
T KOG0066|consen 714 ALAELALGGPDVLILDEPTNNLDIESIDALAEAINEY---NGGVIMVSHDERL-IVETDCNLWVVENQ 777 (807)
T ss_pred HHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhc---cCcEEEEecccce-eeecCceEEEEccC
Confidence 9999999999999999999999999999998888876 3489999999543 33333455666543
|
|
| >cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.2e-21 Score=189.39 Aligned_cols=81 Identities=19% Similarity=0.224 Sum_probs=68.7
Q ss_pred ccCCCChhHHHHHHHHHHH----hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-C-cEEEEEecCCChHHHhcCC-
Q 008534 292 FVRGVSGGERKRVCIGNEI----IINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-G-KTVVTTIHQPSSRLFHKFD- 364 (562)
Q Consensus 292 ~~~~LSGGqrqRv~IAraL----l~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g-~Tvii~tH~~~~~i~~~~D- 364 (562)
.+.+||||||||+.++++| +.+|+++|+||||+|||+.++..+++.|++++++ | .|+|++||++.. +...||
T Consensus 123 ~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~-~~~~~~~ 201 (213)
T cd03277 123 DPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLLP-GLNYHEK 201 (213)
T ss_pred chhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhcc-CCcccCc
Confidence 4578999999998877654 4799999999999999999999999999999765 5 589999999754 446665
Q ss_pred -EEEEEcCCe
Q 008534 365 -KLILLGKGS 373 (562)
Q Consensus 365 -~i~vL~~G~ 373 (562)
+|++|++|+
T Consensus 202 ~~v~~l~~g~ 211 (213)
T cd03277 202 MTVLCVYNGP 211 (213)
T ss_pred eEEEEEecCc
Confidence 788888886
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.8e-21 Score=202.36 Aligned_cols=201 Identities=23% Similarity=0.325 Sum_probs=154.8
Q ss_pred CceeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh
Q 008534 146 LPIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK 225 (562)
Q Consensus 146 ~~~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~ 225 (562)
.++.+++.+|+|.|. ++ ..+++.++++.++.-..++++|+||+||||+++++.|.+. +..|.+.+.+
T Consensus 359 ~~p~l~i~~V~f~y~-----p~-~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~--~~rgi~~~~~----- 425 (582)
T KOG0062|consen 359 SPPNLRISYVAFEYT-----PS-EYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLT--PTRGIVGRHP----- 425 (582)
T ss_pred CCCeeEEEeeeccCC-----Cc-chhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCC--cccceeeecc-----
Confidence 356799999999873 22 2279999999999999999999999999999999998654 3467765543
Q ss_pred hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHH
Q 008534 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC 305 (562)
Q Consensus 226 ~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ 305 (562)
|.+|+|-+|...=+-.+.|-+-- +....+ | +.++ +.+...+..+||+... ....+.+||||||=||+
T Consensus 426 --r~ri~~f~Qhhvd~l~~~v~~vd-~~~~~~-p-G~~~----ee~r~hl~~~Gl~g~l----a~~si~~LSGGQKsrva 492 (582)
T KOG0062|consen 426 --RLRIKYFAQHHVDFLDKNVNAVD-FMEKSF-P-GKTE----EEIRRHLGSFGLSGEL----ALQSIASLSGGQKSRVA 492 (582)
T ss_pred --cceecchhHhhhhHHHHHhHHHH-HHHHhC-C-CCCH----HHHHHHHHhcCCCchh----hhccccccCCcchhHHH
Confidence 56799999986543344554432 322222 2 2233 3455678889997422 12235789999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEE
Q 008534 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (562)
Q Consensus 306 IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~ 376 (562)
+|.....+|.+|+|||||+.||-.+-..+.+.|+.. +-.||+|||+. ..+-..|+.+++.++|++.-
T Consensus 493 fA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F---~GGVv~VSHd~-~fi~~~c~E~Wvve~g~vt~ 559 (582)
T KOG0062|consen 493 FAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNF---NGGVVLVSHDE-EFISSLCKELWVVEDGKVTP 559 (582)
T ss_pred HHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhc---CCcEEEEECcH-HHHhhcCceeEEEcCCcEEe
Confidence 999999999999999999999999988888888865 34899999995 45777999999999999854
|
|
| >cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes | Back alignment and domain information |
|---|
Probab=99.84 E-value=8e-21 Score=185.35 Aligned_cols=154 Identities=23% Similarity=0.222 Sum_probs=110.0
Q ss_pred eeeceEEEEeCCe-EEEEECCCCCcHHHHHHHHH-cCCCCCCCccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHHH
Q 008534 172 ILNGITGSVNPGE-VLALMGPSGSGKTTLLNLLS-GRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKET 249 (562)
Q Consensus 172 iL~~vs~~i~~Ge-~~alvGpsGsGKSTLl~~L~-G~l~~~~~~G~I~i~G~~~~~~~~~~igyV~Q~~~l~~~lTV~en 249 (562)
-+-++|+++.+|+ +++|+|||||||||||++|+ +.+. ...|. .+...-...++|+.|....+
T Consensus 16 ~~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~--~~~G~------~vp~~~~~~~~~~~~~~~~l-------- 79 (200)
T cd03280 16 KVVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLM--AQSGL------PIPAAEGSSLPVFENIFADI-------- 79 (200)
T ss_pred ceEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHH--HHcCC------CccccccccCcCccEEEEec--------
Confidence 4568999999995 89999999999999999998 1110 00110 00000001234444432111
Q ss_pred HHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 008534 250 LTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDST 329 (562)
Q Consensus 250 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~ 329 (562)
+..+..+. ....+|+||||++.|++++ .+|+++|+||||+|||+.
T Consensus 80 -----------------------------g~~~~l~~-----~~s~fs~g~~~~~~i~~~~-~~p~llllDEp~~glD~~ 124 (200)
T cd03280 80 -----------------------------GDEQSIEQ-----SLSTFSSHMKNIARILQHA-DPDSLVLLDELGSGTDPV 124 (200)
T ss_pred -----------------------------Cchhhhhc-----CcchHHHHHHHHHHHHHhC-CCCcEEEEcCCCCCCCHH
Confidence 11110111 1246999999999999884 899999999999999999
Q ss_pred HHHHHH-HHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEec
Q 008534 330 TALRIV-QMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (562)
Q Consensus 330 ~~~~i~-~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G 378 (562)
....+. ..++.+.+.|.|+|++||+. ++...||++++|++|++++.+
T Consensus 125 ~~~~i~~~~l~~l~~~~~~vi~~tH~~--~l~~~~d~~~~l~~g~l~~~~ 172 (200)
T cd03280 125 EGAALAIAILEELLERGALVIATTHYG--ELKAYAYKREGVENASMEFDP 172 (200)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEECCHH--HHHHHHhcCCCeEEEEEEEec
Confidence 999996 46787777789999999983 467899999999999998874
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a |
| >cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms | Back alignment and domain information |
|---|
Probab=99.83 E-value=7.9e-20 Score=175.49 Aligned_cols=74 Identities=24% Similarity=0.353 Sum_probs=68.3
Q ss_pred CChhHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcC
Q 008534 296 VSGGERKRVCIGNEII----INPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK 371 (562)
Q Consensus 296 LSGGqrqRv~IAraLl----~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~ 371 (562)
||||||||++|||+|+ .+|+++++|||+++||+..+..+.+.|+++++.|.|+|+++|++. ....+|+++.+.+
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~~--~~~~adrvi~i~~ 172 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKE--MFENADKLIGVLF 172 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHH--HHhhCCeEEEEEE
Confidence 9999999999999996 699999999999999999999999999999877899999999964 4578999999975
|
SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression. |
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.2e-20 Score=193.79 Aligned_cols=170 Identities=32% Similarity=0.495 Sum_probs=128.3
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCC-------------h---h-----cc--CcEEEEc
Q 008534 179 SVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS-------------K---S-----LK--SKIGFVT 235 (562)
Q Consensus 179 ~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~-------------~---~-----~~--~~igyV~ 235 (562)
..++|++++|+||||-||||.+|+|+|.+. |. =|+ +++.|-. . . +| .++-||.
T Consensus 96 ~pr~G~V~GilG~NGiGKsTalkILaGel~-PN-LG~--~~~pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~QYVd 171 (591)
T COG1245 96 TPRPGKVVGILGPNGIGKSTALKILAGELK-PN-LGR--YEDPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYVD 171 (591)
T ss_pred CCCCCcEEEEEcCCCccHHHHHHHHhCccc-cC-CCC--CCCCCCHHHHHHHhhhhHHHHHHHHHHcCCcceecchHHHH
Confidence 357999999999999999999999999765 32 232 2332210 0 0 01 1122333
Q ss_pred cCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCC
Q 008534 236 QDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPS 315 (562)
Q Consensus 236 Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~ 315 (562)
--|..+- -+|.|-|.-. ...-..+++++.++|.+..|..+ .+|||||-||++||.+++++++
T Consensus 172 ~iPk~~K-G~v~elLk~~------------de~g~~devve~l~L~nvl~r~v-----~~LSGGELQr~aIaa~l~rdAD 233 (591)
T COG1245 172 LIPKVVK-GKVGELLKKV------------DERGKFDEVVERLGLENVLDRDV-----SELSGGELQRVAIAAALLRDAD 233 (591)
T ss_pred HHHHHhc-chHHHHHHhh------------hhcCcHHHHHHHhcchhhhhhhh-----hhcCchHHHHHHHHHHHhccCC
Confidence 3344443 3777766522 11235778899999998777654 6899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcC
Q 008534 316 LLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK 371 (562)
Q Consensus 316 iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~ 371 (562)
++++|||||-||...+....+.++++++.+++||++.||+.- +--++|-|.++..
T Consensus 234 vY~FDEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDLav-LD~lsD~vhI~YG 288 (591)
T COG1245 234 VYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDLAV-LDYLSDFVHILYG 288 (591)
T ss_pred EEEEcCCcccccHHHHHHHHHHHHHHhccCCeEEEEechHHH-HHHhhheeEEEec
Confidence 999999999999999999999999999889999999999763 4457899999864
|
|
| >cd03283 ABC_MutS-like MutS-like homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.9e-20 Score=180.64 Aligned_cols=148 Identities=17% Similarity=0.185 Sum_probs=107.6
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHH
Q 008534 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKE 248 (562)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~~~igyV~Q~~~l~~~lTV~e 248 (562)
.+.|++|+++.. |++++|+||||||||||+|+|+|... +...|.++.. -.+++|.+.+|+.+|+.|
T Consensus 13 ~~~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~-------l~~~G~~v~a-----~~~~~q~~~l~~~~~~~d 78 (199)
T cd03283 13 EKRVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVI-------LAQAGAPVCA-----SSFELPPVKIFTSIRVSD 78 (199)
T ss_pred CCeecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHH-------HHHcCCEEec-----CccCcccceEEEeccchh
Confidence 346888887775 79999999999999999999998432 1224444422 136778788999999999
Q ss_pred HHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 008534 249 TLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDS 328 (562)
Q Consensus 249 nl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~ 328 (562)
|+.++... ...+ ..++.++++.+++ .+|+++|+||||+|||+
T Consensus 79 ~l~~~~s~------~~~e-~~~~~~iL~~~~~-------------------------------~~p~llllDEp~~glD~ 120 (199)
T cd03283 79 DLRDGISY------FYAE-LRRLKEIVEKAKK-------------------------------GEPVLFLLDEIFKGTNS 120 (199)
T ss_pred ccccccCh------HHHH-HHHHHHHHHhccC-------------------------------CCCeEEEEecccCCCCH
Confidence 99875311 1222 2456777766542 68999999999999999
Q ss_pred HHHHHHH-HHHHHHHHCCcEEEEEecCCChHHHhc--CCEEEEE
Q 008534 329 TTALRIV-QMLQDIAEAGKTVVTTIHQPSSRLFHK--FDKLILL 369 (562)
Q Consensus 329 ~~~~~i~-~~L~~l~~~g~Tvii~tH~~~~~i~~~--~D~i~vL 369 (562)
.....+. ..++.+.+.|.|+|++||++.. +... .++|-.+
T Consensus 121 ~~~~~l~~~ll~~l~~~~~tiiivTH~~~~-~~~~~~~~~v~~~ 163 (199)
T cd03283 121 RERQAASAAVLKFLKNKNTIGIISTHDLEL-ADLLDLDSAVRNY 163 (199)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEcCcHHH-HHhhhcCCCeEEE
Confidence 9988775 4678887778999999999753 3322 3445444
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid |
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.7e-19 Score=213.61 Aligned_cols=199 Identities=24% Similarity=0.377 Sum_probs=143.9
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHH-c----CCCC--CCCccEEEECCEeCCh--------------hccC-
Q 008534 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLS-G----RLME--PTVGGSITYNDHPYSK--------------SLKS- 229 (562)
Q Consensus 172 iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~-G----~l~~--~~~~G~I~i~G~~~~~--------------~~~~- 229 (562)
=|+||+.+|+-|.+++|.|.||||||||++-.. - .+.. ....--|.+|-.|+.+ ..|+
T Consensus 1505 NLk~v~v~iPlg~l~~vTGVSGSGKStLi~~~l~~~l~~~l~~g~~~~~~vi~vdQspIgrt~RS~paTY~g~fd~IR~l 1584 (1809)
T PRK00635 1505 TIQNLNVSAPLHSLVAISGVSGSGKTSLLLEGFYKQACALIEKGPSVFSEIIFLDSHPQISSQRSDISTYFDIAPSLRNF 1584 (1809)
T ss_pred cCCcceeeccCCcEEEEeCCCCCcHHHHHHHHHHHHHHHHhcccccccCcEEEEeCCCCCCCCCCchhhhhhhHHHHHHH
Confidence 489999999999999999999999999997443 1 0100 0123447777666521 0000
Q ss_pred ---------------c---------------EEEEccCCCCCC--------------------------------CCCHH
Q 008534 230 ---------------K---------------IGFVTQDDVLFP--------------------------------HLTVK 247 (562)
Q Consensus 230 ---------------~---------------igyV~Q~~~l~~--------------------------------~lTV~ 247 (562)
. -|++.=+..++| .|||.
T Consensus 1585 FA~~~~ak~rg~~~~~FSfN~~~GrC~~C~G~G~i~i~m~fl~dv~~~C~~C~G~R~~~e~L~v~~~gk~I~dvL~mtv~ 1664 (1809)
T PRK00635 1585 YASLTQAKALNISASMFSTNTKQGQCSDCWGLGYQWIDRAFYALEKRPCPTCSGFRIQPLAQEVVYEGKHFGQLLQTPIE 1664 (1809)
T ss_pred HhcCHHHHHcCCCcccccccCCCCCCCCCccCceEEEecccCCCcccCCCCCCCcCCCHHHHhheeCCCCHHHHhcCCHH
Confidence 0 111111111111 35666
Q ss_pred HHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhC---CCEEEEeCCCC
Q 008534 248 ETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIIN---PSLLFLDEPTS 324 (562)
Q Consensus 248 enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~---P~iLlLDEPTs 324 (562)
|-+.|... ..+-.+.-+.|..+||... .+| +...+|||||.||+-||..|..+ +.+++|||||.
T Consensus 1665 ea~~~F~~---------~~~i~~~L~~L~~vGLgYl---~LG-q~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~ 1731 (1809)
T PRK00635 1665 EVAETFPF---------LKKIQKPLQALIDNGLGYL---PLG-QNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIAT 1731 (1809)
T ss_pred HHHHHhhc---------cHHHHHHHHHHHHcCCCee---eCC-CcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCC
Confidence 66665421 1123345567888898643 123 44568999999999999999876 78999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEc------CCeEEEecChHHHHH
Q 008534 325 GLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG------KGSLLYFGKASEAMA 385 (562)
Q Consensus 325 gLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~------~G~iv~~G~~~el~~ 385 (562)
||++.....+++.|++|.+.|.|||+|.|++. +.+.||.|+-|. .|+||+.|+|+++.+
T Consensus 1732 GLh~~d~~~Ll~~l~~L~~~g~tvivieH~~~--~i~~aD~iidlgp~gG~~GG~iva~Gtp~~i~~ 1796 (1809)
T PRK00635 1732 SLDNQQKSALLVQLRTLVSLGHSVIYIDHDPA--LLKQADYLIEMGPGSGKTGGKILFSGPPKDISA 1796 (1809)
T ss_pred CCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHH--HHHhCCEEEEcCCCcccCCCEEEEEeCHHHHhh
Confidence 99999999999999999999999999999964 567899999984 579999999999864
|
|
| >KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.3e-19 Score=192.57 Aligned_cols=184 Identities=23% Similarity=0.374 Sum_probs=133.4
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhcc
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~ 228 (562)
.|.++||-.-- + ....++..++|.|++|--+.|.||||||||+|+++|.|. + |...|...+ | -+
T Consensus 481 gI~lenIpvIt------P-~~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggL-W-Pvy~g~L~~---P----~~ 544 (728)
T KOG0064|consen 481 GIILENIPVIT------P-AGDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGL-W-PVYNGLLSI---P----RP 544 (728)
T ss_pred ceEEecCceec------c-CcceeecceeEEecCCceEEEECCCCccHHHHHHHHhcc-C-cccCCeeec---C----CC
Confidence 47788886542 2 245689999999999999999999999999999999994 4 233443321 1 23
Q ss_pred CcEEEEccCCCCCCCCCHHHHHHHHHhhC--CCCCccHHHHHHHHHHHHHHcCCCccccccccC----cccCCCChhHHH
Q 008534 229 SKIGFVTQDDVLFPHLTVKETLTYAALLR--LPNTLTKQQKEKRAIDVINELGLERCQDTMIGG----SFVRGVSGGERK 302 (562)
Q Consensus 229 ~~igyV~Q~~~l~~~lTV~enl~~~~~~~--~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~----~~~~~LSGGqrq 302 (562)
.++-|+||.|.+- .-|.+|-+-|..... ..++..+ +....++..+.|++......|= ..-.-|||||||
T Consensus 545 ~~mFYIPQRPYms-~gtlRDQIIYPdS~e~~~~kg~~d----~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQ 619 (728)
T KOG0064|consen 545 NNIFYIPQRPYMS-GGTLRDQIIYPDSSEQMKRKGYTD----QDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQ 619 (728)
T ss_pred cceEeccCCCccC-cCcccceeecCCcHHHHHhcCCCH----HHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHH
Confidence 4599999999876 458888887642110 0012222 2344455555555443332220 112359999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCC
Q 008534 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPS 356 (562)
Q Consensus 303 Rv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~ 356 (562)
|+++||.+.++|+.-+|||.||+..+..+..+.+..++ .|.+.|-|+|+|+
T Consensus 620 R~~mARm~yHrPkyalLDEcTsAvsidvE~~i~~~ak~---~gi~llsithrps 670 (728)
T KOG0064|consen 620 RMGMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAKD---AGISLLSITHRPS 670 (728)
T ss_pred HHHHHHHHhcCcchhhhhhhhcccccchHHHHHHHHHh---cCceEEEeecCcc
Confidence 99999999999999999999999999999998888765 4899999999987
|
|
| >COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.80 E-value=2e-18 Score=191.68 Aligned_cols=110 Identities=28% Similarity=0.494 Sum_probs=95.4
Q ss_pred HHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCc
Q 008534 270 RAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINP---SLLFLDEPTSGLDSTTALRIVQMLQDIAEAGK 346 (562)
Q Consensus 270 ~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P---~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~ 346 (562)
+..+.|..+||.-. .+| ....+|||||.|||-||..|.... -++||||||+||-.....++++.|.+|...|-
T Consensus 801 rkLqtL~dVGLgYi---~LG-QpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd~Gn 876 (935)
T COG0178 801 RKLQTLVDVGLGYI---KLG-QPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGN 876 (935)
T ss_pred HHHHHHHHcCcceE---ecC-CccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCC
Confidence 44456677888632 233 456789999999999999999887 99999999999999999999999999999999
Q ss_pred EEEEEecCCChHHHhcCCEEEEE------cCCeEEEecChHHHHH
Q 008534 347 TVVTTIHQPSSRLFHKFDKLILL------GKGSLLYFGKASEAMA 385 (562)
Q Consensus 347 Tvii~tH~~~~~i~~~~D~i~vL------~~G~iv~~G~~~el~~ 385 (562)
|||+|.|.+. +.+.||.|+=| ..|+||+.|+|+++.+
T Consensus 877 TViVIEHNLd--VIk~AD~IIDLGPeGG~~GG~iva~GTPeeva~ 919 (935)
T COG0178 877 TVIVIEHNLD--VIKTADWIIDLGPEGGDGGGEIVASGTPEEVAK 919 (935)
T ss_pred EEEEEecccc--eEeecCEEEEcCCCCCCCCceEEEecCHHHHHh
Confidence 9999999975 67899999998 4589999999999875
|
|
| >cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.1e-19 Score=180.48 Aligned_cols=153 Identities=22% Similarity=0.228 Sum_probs=115.9
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEE-EEccCCCCCCCCCHH
Q 008534 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIG-FVTQDDVLFPHLTVK 247 (562)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~~~ig-yV~Q~~~l~~~lTV~ 247 (562)
.+.+.+|+++++.+|++++|.||||+|||||+++|+ .. .+..++| |||.+...++ +
T Consensus 16 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~-~~------------------~~la~~g~~vpa~~~~~~---~- 72 (222)
T cd03285 16 VAFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIG-VI------------------VLMAQIGCFVPCDSADIP---I- 72 (222)
T ss_pred CCeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHH-HH------------------HHHHHhCCCcCcccEEEe---c-
Confidence 457899999999999999999999999999999998 21 1122333 6666543222 0
Q ss_pred HHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHH--hhCCCEEEEeCC---
Q 008534 248 ETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEI--IINPSLLFLDEP--- 322 (562)
Q Consensus 248 enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraL--l~~P~iLlLDEP--- 322 (562)
+++++..+++.+.. .+++|.|+++++.+++++ +.+|+++|||||
T Consensus 73 -----------------------~~~il~~~~l~d~~--------~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~g 121 (222)
T cd03285 73 -----------------------VDCILARVGASDSQ--------LKGVSTFMAEMLETAAILKSATENSLIIIDELGRG 121 (222)
T ss_pred -----------------------cceeEeeeccccch--------hcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCC
Confidence 12234445655332 257999999999999999 899999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHH-CCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecC
Q 008534 323 TSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (562)
Q Consensus 323 TsgLD~~~~~~i~~~L~~l~~-~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (562)
|++||+...... .++.+.+ .|.++|++||+ .++.++||++..+++|++.+.+.
T Consensus 122 T~~lD~~~~~~~--il~~l~~~~~~~vlisTH~--~el~~~~~~~~~i~~g~~~~~~~ 175 (222)
T cd03285 122 TSTYDGFGLAWA--IAEYIATQIKCFCLFATHF--HELTALADEVPNVKNLHVTALTD 175 (222)
T ss_pred CChHHHHHHHHH--HHHHHHhcCCCeEEEEech--HHHHHHhhcCCCeEEEEEEEEEe
Confidence 999999887543 3344443 47899999996 45788999999999999988764
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.1e-18 Score=178.54 Aligned_cols=76 Identities=24% Similarity=0.362 Sum_probs=68.8
Q ss_pred CCChhHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEc
Q 008534 295 GVSGGERKRVCIGNEIII----NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG 370 (562)
Q Consensus 295 ~LSGGqrqRv~IAraLl~----~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~ 370 (562)
.|||||+||++||++++. +|+++||||||++||+.....+.+.|+++.+ +.|+|++||++. +...||++++|.
T Consensus 170 ~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~-~~tii~isH~~~--~~~~~d~~~~l~ 246 (276)
T cd03241 170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSR-SHQVLCITHLPQ--VAAMADNHFLVE 246 (276)
T ss_pred hcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEechHH--HHHhcCcEEEEE
Confidence 599999999999997664 9999999999999999999999999999864 789999999975 457999999998
Q ss_pred CCe
Q 008534 371 KGS 373 (562)
Q Consensus 371 ~G~ 373 (562)
+|.
T Consensus 247 ~~~ 249 (276)
T cd03241 247 KEV 249 (276)
T ss_pred Eec
Confidence 864
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=6.6e-19 Score=182.91 Aligned_cols=185 Identities=26% Similarity=0.434 Sum_probs=138.9
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC------CCCccEEEECCEeCChhccCcEEEEccCC-CCC
Q 008534 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME------PTVGGSITYNDHPYSKSLKSKIGFVTQDD-VLF 241 (562)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~------~~~~G~I~i~G~~~~~~~~~~igyV~Q~~-~l~ 241 (562)
...+|+|||++|+||++++|+|+|||||||+|++|+|.... .|++|.|.+--.. ..+.+|-+. .-|
T Consensus 395 eryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt-------~~a~iPge~Ep~f 467 (593)
T COG2401 395 ERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNT-------VSALIPGEYEPEF 467 (593)
T ss_pred eeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccc-------hhhccCccccccc
Confidence 35799999999999999999999999999999999995321 1346776553221 123445432 223
Q ss_pred CCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEeC
Q 008534 242 PHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDE 321 (562)
Q Consensus 242 ~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDE 321 (562)
..-|+.|.+.-- +. +-..+.+++.+.||.+.. .-....++||-|||.|+.||.+|...|.+++.||
T Consensus 468 ~~~tilehl~s~-----tG------D~~~AveILnraGlsDAv---lyRr~f~ELStGQKeR~KLAkllaerpn~~~iDE 533 (593)
T COG2401 468 GEVTILEHLRSK-----TG------DLNAAVEILNRAGLSDAV---LYRRKFSELSTGQKERAKLAKLLAERPNVLLIDE 533 (593)
T ss_pred CchhHHHHHhhc-----cC------chhHHHHHHHhhccchhh---hhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhh
Confidence 355777766421 11 112356788899997532 1123457899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhc-CCEEEEEcCCeEE
Q 008534 322 PTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHK-FDKLILLGKGSLL 375 (562)
Q Consensus 322 PTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~-~D~i~vL~~G~iv 375 (562)
--|.||+.++..+..-|.+++++ |.|++++||++.- +-.+ -|+++++.=|.+.
T Consensus 534 F~AhLD~~TA~rVArkiselaRe~giTlivvThrpEv-~~AL~PD~li~vgYg~v~ 588 (593)
T COG2401 534 FAAHLDELTAVRVARKISELAREAGITLIVVTHRPEV-GNALRPDTLILVGYGKVP 588 (593)
T ss_pred hhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHHH-HhccCCceeEEeeccccc
Confidence 99999999999999999999864 9999999999753 4444 5999988766543
|
|
| >cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.2e-18 Score=164.54 Aligned_cols=75 Identities=28% Similarity=0.413 Sum_probs=67.7
Q ss_pred CCChhHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEc
Q 008534 295 GVSGGERKRVCIGNEIII----NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG 370 (562)
Q Consensus 295 ~LSGGqrqRv~IAraLl~----~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~ 370 (562)
+||+||+||++||++|.. +|+++|+|||++|+|+.....+.+.+.++.+++.++|++||++. +...+|+++.|+
T Consensus 77 ~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~TH~~~--~~~~~d~~~~l~ 154 (162)
T cd03227 77 QLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLPE--LAELADKLIHIK 154 (162)
T ss_pred eccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHH--HHHhhhhEEEEE
Confidence 499999999999999987 78999999999999999999999999998655889999999965 457799999985
Q ss_pred C
Q 008534 371 K 371 (562)
Q Consensus 371 ~ 371 (562)
.
T Consensus 155 ~ 155 (162)
T cd03227 155 K 155 (162)
T ss_pred E
Confidence 3
|
These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. |
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=99.75 E-value=6.2e-18 Score=196.84 Aligned_cols=136 Identities=23% Similarity=0.418 Sum_probs=108.3
Q ss_pred CCCCHHHHHHHHHhhCCCCC---cc---HHHHHHHHHHHHHHcCCCcc-ccccccCcccCCCChhHHHHHHHHHHHhhCC
Q 008534 242 PHLTVKETLTYAALLRLPNT---LT---KQQKEKRAIDVINELGLERC-QDTMIGGSFVRGVSGGERKRVCIGNEIIINP 314 (562)
Q Consensus 242 ~~lTV~enl~~~~~~~~~~~---~~---~~~~~~~v~~~l~~lgL~~~-~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P 314 (562)
..++|.|.+.|...+..+.. .. -.+...++ +.++.+||.+. .|+ .+.+|||||+|||.||++|..+|
T Consensus 435 ~~~~v~~~~~~~~~~~~~~~~~~~a~~~~~~i~~rl-~~L~~vGL~~l~l~r-----~~~~LSgGE~QRv~LA~aL~~~~ 508 (943)
T PRK00349 435 SELSIGEALEFFENLKLSEQEAKIAEPILKEIRERL-KFLVDVGLDYLTLSR-----SAGTLSGGEAQRIRLATQIGSGL 508 (943)
T ss_pred hcCcHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH-HHhhccccCCCCCCC-----chhhCCHHHHHHHHHHHHHhhCC
Confidence 36899999998544322110 00 01223344 36778888754 454 35689999999999999999997
Q ss_pred --CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEE------cCCeEEEecChHHHHH
Q 008534 315 --SLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL------GKGSLLYFGKASEAMA 385 (562)
Q Consensus 315 --~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL------~~G~iv~~G~~~el~~ 385 (562)
++|||||||+|||+.....+++.|+++++.|.|||+|+|++.. + ..||+|++| ++|++++.|+++++..
T Consensus 509 ~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~~~~-i-~~aD~vi~LgpgaG~~~G~iv~~g~~~e~~~ 585 (943)
T PRK00349 509 TGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHDEDT-I-RAADYIVDIGPGAGVHGGEVVASGTPEEIMK 585 (943)
T ss_pred CCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-H-HhCCEEEEeccccCCCCCEEeeccCHHHHhc
Confidence 9999999999999999999999999998889999999999764 4 569999999 9999999999988743
|
|
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.1e-19 Score=185.85 Aligned_cols=214 Identities=25% Similarity=0.348 Sum_probs=150.2
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCC---
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS--- 224 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~--- 224 (562)
..|.++|.+.+- .++..+.|-|++|-.|..++||||||-||||||+.|+.|-..-|..=.|++..+.+-
T Consensus 263 ~DIKiEnF~ISA--------~Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEvvad~ 334 (807)
T KOG0066|consen 263 MDIKIENFDISA--------QGKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADS 334 (807)
T ss_pred ccceeeeeeeec--------ccceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeeeeecC
Confidence 358888887764 467899999999999999999999999999999999987432222234444443321
Q ss_pred --------hhccCcEEEEccCCC-----CCCCCCHHHHHHHH-HhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccC
Q 008534 225 --------KSLKSKIGFVTQDDV-----LFPHLTVKETLTYA-ALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGG 290 (562)
Q Consensus 225 --------~~~~~~igyV~Q~~~-----l~~~lTV~enl~~~-~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~ 290 (562)
+.-.++..++-.+.. --...|+.|-+.-. ..++ .+-....++++..+|.-+|++.... +
T Consensus 335 t~Ai~tvl~aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELr---aiGA~sAEarARRILAGLGFskEMQ----~ 407 (807)
T KOG0066|consen 335 TSAIDTVLKADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELR---AIGADSAEARARRILAGLGFSKEMQ----E 407 (807)
T ss_pred cHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHH---HhccccchhHHHHHHhhcCCChhHh----c
Confidence 000111111111111 11245666666422 2222 1112234556778888888875433 2
Q ss_pred cccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEc
Q 008534 291 SFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG 370 (562)
Q Consensus 291 ~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~ 370 (562)
++...+|||-|-||++||||...|-+|.|||||+.||.....-+-+.|..+. +|.+|++||-.. +-..|..|+-|+
T Consensus 408 rPt~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWk---KTLLIVSHDQgF-LD~VCtdIIHLD 483 (807)
T KOG0066|consen 408 RPTTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWK---KTLLIVSHDQGF-LDSVCTDIIHLD 483 (807)
T ss_pred CCccccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhhh---heeEEEecccch-HHHHHHHHhhhh
Confidence 3456799999999999999999999999999999999999888888888875 599999999654 667899999999
Q ss_pred CCeEE-EecCh
Q 008534 371 KGSLL-YFGKA 380 (562)
Q Consensus 371 ~G~iv-~~G~~ 380 (562)
+-++- |.|+.
T Consensus 484 ~qkLhyYrGNY 494 (807)
T KOG0066|consen 484 NQKLHYYRGNY 494 (807)
T ss_pred hhhhhhhcchH
Confidence 88774 45654
|
|
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.6e-17 Score=193.09 Aligned_cols=134 Identities=24% Similarity=0.415 Sum_probs=105.3
Q ss_pred CCCHHHHHHHHHhhCCCCCccH------HHHHHHHHHHHHHcCCCcc-ccccccCcccCCCChhHHHHHHHHHHHhhCC-
Q 008534 243 HLTVKETLTYAALLRLPNTLTK------QQKEKRAIDVINELGLERC-QDTMIGGSFVRGVSGGERKRVCIGNEIIINP- 314 (562)
Q Consensus 243 ~lTV~enl~~~~~~~~~~~~~~------~~~~~~v~~~l~~lgL~~~-~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P- 314 (562)
.|||.|.+.|...+..+..... .+...+ .+.+..+||... .+ +.+.+|||||+|||.||++|+.+|
T Consensus 434 ~~~v~~~~~~~~~l~~~~~~~~ia~~i~~~i~~r-l~~L~~vgL~~l~l~-----r~~~tLSGGE~QRv~LA~aL~~~~~ 507 (924)
T TIGR00630 434 ELSIREAHEFFNQLDLTPEEKKIAEEILKEIKER-LGFLIDVGLDYLTLS-----RAAGTLSGGEAQRIRLATQIGSGLT 507 (924)
T ss_pred cCCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH-HHhHhhccccccccC-----CCcCcCCHHHHHHHHHHHHHhhCCC
Confidence 6899999988765432210000 011112 234566787643 33 345789999999999999999986
Q ss_pred -CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEE------cCCeEEEecChHHHH
Q 008534 315 -SLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL------GKGSLLYFGKASEAM 384 (562)
Q Consensus 315 -~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL------~~G~iv~~G~~~el~ 384 (562)
.+|||||||+|||+.....+++.|+++.++|.|||+|+|++.. + ..||+|++| ++|+|++.|+++++.
T Consensus 508 ~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~~~-i-~~aD~vi~LgpgaG~~~G~Iv~~g~~~el~ 582 (924)
T TIGR00630 508 GVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDEET-I-RAADYVIDIGPGAGIHGGEVVASGTPEEIL 582 (924)
T ss_pred CcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHH-H-hhCCEEEEecccccCCCCEEeeccCHHHHh
Confidence 8999999999999999999999999998889999999999753 4 589999999 899999999998874
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.5e-17 Score=166.29 Aligned_cols=77 Identities=13% Similarity=0.196 Sum_probs=62.5
Q ss_pred cCCCChhHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcC
Q 008534 293 VRGVSGGERKRVCIGNEII---------INPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKF 363 (562)
Q Consensus 293 ~~~LSGGqrqRv~IAraLl---------~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~ 363 (562)
..-+|+||||+++||++|+ .+|++++|||||++||+..+..+.+.|+++ +. +++++|+.. .+...|
T Consensus 181 ~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~---~q-~ii~~~~~~-~~~~~~ 255 (270)
T cd03242 181 ADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGR---VQ-TFVTTTDLA-DFDALW 255 (270)
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcC---CC-EEEEeCCch-hccchh
Confidence 3458999999999999985 699999999999999999999999999865 23 455555433 345566
Q ss_pred ---CEEEEEcCCeE
Q 008534 364 ---DKLILLGKGSL 374 (562)
Q Consensus 364 ---D~i~vL~~G~i 374 (562)
++++.+++|++
T Consensus 256 ~~~~~i~~l~~g~i 269 (270)
T cd03242 256 LRRAQIFRVDAGTL 269 (270)
T ss_pred ccCccEEEEeCcEE
Confidence 78999999986
|
When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.2e-18 Score=168.38 Aligned_cols=157 Identities=15% Similarity=0.119 Sum_probs=106.2
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHHHHHHHH
Q 008534 175 GITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAA 254 (562)
Q Consensus 175 ~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~~~igyV~Q~~~l~~~lTV~enl~~~~ 254 (562)
..++++.+|++++|+|||||||||||++|++.... ...|.. +. ..+..++|..|....+ ...+++
T Consensus 21 ~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~-~~~g~~------~~-~~~~~i~~~dqi~~~~---~~~d~i---- 85 (202)
T cd03243 21 PNDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLL-AQIGCF------VP-AESASIPLVDRIFTRI---GAEDSI---- 85 (202)
T ss_pred eeeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHH-HHcCCC------cc-ccccccCCcCEEEEEe---cCcccc----
Confidence 34555668999999999999999999999953221 112211 11 1122344433322211 111111
Q ss_pred hhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 008534 255 LLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRI 334 (562)
Q Consensus 255 ~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i 334 (562)
.. ....++++++| +..+.+++.+|+++|+||||+|||+.....+
T Consensus 86 ------------------------------~~-----~~s~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~~~l 129 (202)
T cd03243 86 ------------------------------SD-----GRSTFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEGLAI 129 (202)
T ss_pred ------------------------------cC-----CceeHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHHHHH
Confidence 00 11346666665 7777788899999999999999999988887
Q ss_pred HH-HHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHH
Q 008534 335 VQ-MLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (562)
Q Consensus 335 ~~-~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~ 384 (562)
.. .++.+.+.+.++|++||++ ++...+|++..++.|++...+...++.
T Consensus 130 ~~~ll~~l~~~~~~vi~~tH~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~ 178 (202)
T cd03243 130 AYAVLEHLLEKGCRTLFATHFH--ELADLPEQVPGVKNLHMEELITTGGLT 178 (202)
T ss_pred HHHHHHHHHhcCCeEEEECChH--HHHHHhhcCCCeEEEEEEEEecCCeee
Confidence 65 4666666689999999985 356789999999999999988765543
|
Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru |
| >cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.67 E-value=9.8e-17 Score=157.33 Aligned_cols=136 Identities=21% Similarity=0.245 Sum_probs=99.5
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEE-EEccCCCCCCCCCHH
Q 008534 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIG-FVTQDDVLFPHLTVK 247 (562)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~~~ig-yV~Q~~~l~~~lTV~ 247 (562)
++.+.+|+++++++|++++|+||||+||||++++|++.. +..++| || |..+..+++.
T Consensus 15 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~-------------------~la~~G~~v---pa~~~~l~~~ 72 (204)
T cd03282 15 KNFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLA-------------------IMAQIGCFV---PAEYATLPIF 72 (204)
T ss_pred CcEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHH-------------------HHHHcCCCc---chhhcCccCh
Confidence 457999999999999999999999999999999999732 111222 33 3344556777
Q ss_pred HHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 008534 248 ETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLD 327 (562)
Q Consensus 248 enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD 327 (562)
|+|... ++..+..+. ....+|+|++|+ ..+.+++.+|+++|||||++|+|
T Consensus 73 d~I~~~------------------------~~~~d~~~~-----~~S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~ 122 (204)
T cd03282 73 NRLLSR------------------------LSNDDSMER-----NLSTFASEMSET-AYILDYADGDSLVLIDELGRGTS 122 (204)
T ss_pred hheeEe------------------------cCCccccch-----hhhHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCC
Confidence 776432 122211111 124699999975 55667889999999999999999
Q ss_pred HHHHHHH-HHHHHHHHHCCcEEEEEecCCC
Q 008534 328 STTALRI-VQMLQDIAEAGKTVVTTIHQPS 356 (562)
Q Consensus 328 ~~~~~~i-~~~L~~l~~~g~Tvii~tH~~~ 356 (562)
+.....+ ...++.+.+.|.++|++||+..
T Consensus 123 ~~~~~~l~~~il~~l~~~~~~~i~~TH~~~ 152 (204)
T cd03282 123 SADGFAISLAILECLIKKESTVFFATHFRD 152 (204)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEECChHH
Confidence 9876665 4557777777999999999854
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >cd03284 ABC_MutS1 MutS1 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.3e-16 Score=154.93 Aligned_cols=160 Identities=19% Similarity=0.157 Sum_probs=109.2
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHH
Q 008534 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKE 248 (562)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~~~igyV~Q~~~l~~~lTV~e 248 (562)
.+.+.+|++++.++ ++++|+|||||||||||++|++...- |+ .|..+.. .+..++|+.| +|+.+++.|
T Consensus 17 ~~~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l----~~---~g~~vp~-~~~~i~~~~~---i~~~~~~~~ 84 (216)
T cd03284 17 EPFVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALL----AQ---IGSFVPA-SKAEIGVVDR---IFTRIGASD 84 (216)
T ss_pred CceEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHH----hc---cCCeecc-ccceecceee---EeccCCchh
Confidence 34689999999988 99999999999999999999863321 11 1222221 1345777765 567778887
Q ss_pred HHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEeCC---CCC
Q 008534 249 TLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEP---TSG 325 (562)
Q Consensus 249 nl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEP---Tsg 325 (562)
|+..+.. . + ..|.++++-+...+.+|+++||||| |++
T Consensus 85 ~ls~g~s--------~-------------------------------f-~~e~~~l~~~l~~~~~~~llllDEp~~gt~~ 124 (216)
T cd03284 85 DLAGGRS--------T-------------------------------F-MVEMVETANILNNATERSLVLLDEIGRGTST 124 (216)
T ss_pred hhccCcc--------h-------------------------------H-HHHHHHHHHHHHhCCCCeEEEEecCCCCCCh
Confidence 7764310 0 0 0112223323333569999999999 888
Q ss_pred CCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHH
Q 008534 326 LDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (562)
Q Consensus 326 LD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~ 384 (562)
+|.... ....++.+.+. +.|+|++||+. ++.+++|++.-+.+|++...+..+++.
T Consensus 125 lD~~~~--~~~il~~l~~~~~~~vi~~TH~~--~l~~l~~~~~~v~~~~~~~~~~~~~l~ 180 (216)
T cd03284 125 YDGLSI--AWAIVEYLHEKIGAKTLFATHYH--ELTELEGKLPRVKNFHVAVKEKGGGVV 180 (216)
T ss_pred HHHHHH--HHHHHHHHHhccCCcEEEEeCcH--HHHHHhhcCCCeEEEEEEEEeeCCeEE
Confidence 888652 23344444555 88999999995 467889998888899988877766654
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam |
| >TIGR02858 spore_III_AA stage III sporulation protein AA | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.4e-15 Score=153.27 Aligned_cols=139 Identities=19% Similarity=0.259 Sum_probs=96.0
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCC-----hhccCcEEEEccCCCCCCCCCHHHHHHHHHhhCC
Q 008534 184 EVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS-----KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRL 258 (562)
Q Consensus 184 e~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~-----~~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~ 258 (562)
.-++|+||||||||||+++|+|.+. +.+|+|.++|+++. .++...+++++|.+ +++.++|.+|..-
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~--~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~-~~~r~~v~~~~~k------ 182 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILS--TGISQLGLRGKKVGIVDERSEIAGCVNGVPQHD-VGIRTDVLDGCPK------ 182 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccC--CCCceEEECCEEeecchhHHHHHHHhccccccc-ccccccccccchH------
Confidence 6789999999999999999998654 45899999999874 23445678888865 3445566554210
Q ss_pred CCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 008534 259 PNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQML 338 (562)
Q Consensus 259 ~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L 338 (562)
.. |+ ..+ ++..+|+++++|||++ ...+...+
T Consensus 183 ------~~--------------------------------~~---~~~--i~~~~P~villDE~~~------~e~~~~l~ 213 (270)
T TIGR02858 183 ------AE--------------------------------GM---MML--IRSMSPDVIVVDEIGR------EEDVEALL 213 (270)
T ss_pred ------HH--------------------------------HH---HHH--HHhCCCCEEEEeCCCc------HHHHHHHH
Confidence 00 00 112 2235999999999974 23344444
Q ss_pred HHHHHCCcEEEEEecCCChH-H-----------HhcCCEEEEEcCCeEEEecChHHH
Q 008534 339 QDIAEAGKTVVTTIHQPSSR-L-----------FHKFDKLILLGKGSLLYFGKASEA 383 (562)
Q Consensus 339 ~~l~~~g~Tvii~tH~~~~~-i-----------~~~~D~i~vL~~G~iv~~G~~~el 383 (562)
+.+ +.|.|+|+++|++... + ...|||+++|++|+ ..|+++++
T Consensus 214 ~~~-~~G~~vI~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~~~--~~g~~~~i 267 (270)
T TIGR02858 214 EAL-HAGVSIIATAHGRDVEDLYKRPVFKELIENEAFERYVVLSRRK--GPGTVEAV 267 (270)
T ss_pred HHH-hCCCEEEEEechhHHHHHHhChHHHHHHhcCceEEEEEEecCC--CCCceeec
Confidence 444 3699999999975431 1 25689999999887 66666554
|
Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation. |
| >KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.6e-15 Score=155.02 Aligned_cols=178 Identities=26% Similarity=0.368 Sum_probs=132.6
Q ss_pred ccceeeceEEEEeCC-----eEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEccCCCCCCC
Q 008534 169 EKDILNGITGSVNPG-----EVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPH 243 (562)
Q Consensus 169 ~~~iL~~vs~~i~~G-----e~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~~~igyV~Q~~~l~~~ 243 (562)
.+.-+-+..+.|+.| |++..+|.||-|||||+++++|++. |...|+|-. -.|+|=||...-=..
T Consensus 348 m~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~-pd~~~e~p~----------lnVSykpqkispK~~ 416 (592)
T KOG0063|consen 348 MKKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLK-PDEGGEIPV----------LNVSYKPQKISPKRE 416 (592)
T ss_pred ceeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCC-CCccCcccc----------cceeccccccCcccc
Confidence 345677888888877 5789999999999999999999764 444454421 237788886443224
Q ss_pred CCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEeCCC
Q 008534 244 LTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPT 323 (562)
Q Consensus 244 lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPT 323 (562)
-||++.+.--.+. .-....-+.++++-|.+++..|.. +.+|||||.|||+||..|=..+++++.|||.
T Consensus 417 ~tvR~ll~~kIr~-------ay~~pqF~~dvmkpL~ie~i~dqe-----vq~lSggelQRval~KOGGKpAdvYliDEps 484 (592)
T KOG0063|consen 417 GTVRQLLHTKIRD-------AYMHPQFVNDVMKPLQIENIIDQE-----VQGLSGGELQRVALALCLGKPADVYLIDEPS 484 (592)
T ss_pred chHHHHHHHHhHh-------hhcCHHHHHhhhhhhhHHHHHhHH-----hhcCCchhhHHHHHHHhcCCCCceEEecCch
Confidence 5898876532111 001123466777777777766654 4689999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHH-HCCcEEEEEecCCChHHHhcCCEEEEEc
Q 008534 324 SGLDSTTALRIVQMLQDIA-EAGKTVVTTIHQPSSRLFHKFDKLILLG 370 (562)
Q Consensus 324 sgLD~~~~~~i~~~L~~l~-~~g~Tvii~tH~~~~~i~~~~D~i~vL~ 370 (562)
+-||++.+...-..+++.. +.++|-.++.|+..... -++||+++.+
T Consensus 485 AylDSeQRi~AskvikRfilhakktafvVEhdfImaT-Yladrvivf~ 531 (592)
T KOG0063|consen 485 AYLDSEQRIIASKVIKRFILHAKKTAFVVEHDFIMAT-YLADRVIVFE 531 (592)
T ss_pred hhcChHHHHHHHHHHHHHHHhccchhhhhhhHHHHHH-hhcceeEEEe
Confidence 9999999988888888864 55899999999965432 3689998764
|
|
| >PRK00064 recF recombination protein F; Reviewed | Back alignment and domain information |
|---|
Probab=99.52 E-value=6.5e-13 Score=141.20 Aligned_cols=77 Identities=21% Similarity=0.290 Sum_probs=65.0
Q ss_pred CCCChhHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhc--
Q 008534 294 RGVSGGERKRVCIGNEII---------INPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHK-- 362 (562)
Q Consensus 294 ~~LSGGqrqRv~IAraLl---------~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~-- 362 (562)
..+|.||+|++.||+.|+ .+|+|||||||+++||+..+..+++.|.++ +..+++++|++.. +...
T Consensus 272 ~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~---~~qv~it~~~~~~-~~~~~~ 347 (361)
T PRK00064 272 DFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL---GAQVFITTTDLED-LADLLE 347 (361)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc---CCEEEEEcCChhh-hhhhhc
Confidence 569999999999999986 699999999999999999999999988754 4588999998643 3344
Q ss_pred CCEEEEEcCCeE
Q 008534 363 FDKLILLGKGSL 374 (562)
Q Consensus 363 ~D~i~vL~~G~i 374 (562)
.++++.|++|++
T Consensus 348 ~~~i~~v~~G~i 359 (361)
T PRK00064 348 NAKIFHVEQGKI 359 (361)
T ss_pred cCcEEEEeCCEE
Confidence 357999999987
|
|
| >smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.1e-14 Score=140.49 Aligned_cols=78 Identities=18% Similarity=0.138 Sum_probs=57.2
Q ss_pred CCCChhHHHHHHHHHHHhh--CCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEE
Q 008534 294 RGVSGGERKRVCIGNEIII--NPSLLFLDEPTSGLDSTTALRIV-QMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILL 369 (562)
Q Consensus 294 ~~LSGGqrqRv~IAraLl~--~P~iLlLDEPTsgLD~~~~~~i~-~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL 369 (562)
..+|+|++| +++++.. +|+++|+|||++|+|+.....+. ..++.+.++ +.++|++||++ ++.+.+|+.--+
T Consensus 60 s~fs~~~~~---l~~~l~~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~--~l~~~~~~~~~v 134 (185)
T smart00534 60 STFMVEMKE---TANILKNATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYH--ELTKLADEHPGV 134 (185)
T ss_pred cHHHHHHHH---HHHHHHhCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHH--HHHHHhhcCccc
Confidence 468888776 4444444 99999999999999999877765 556667664 88999999996 367778754444
Q ss_pred cCCeEEE
Q 008534 370 GKGSLLY 376 (562)
Q Consensus 370 ~~G~iv~ 376 (562)
.+++...
T Consensus 135 ~~~~~~~ 141 (185)
T smart00534 135 RNLHMSA 141 (185)
T ss_pred eEEEEEE
Confidence 4444433
|
|
| >cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis | Back alignment and domain information |
|---|
Probab=99.47 E-value=6.1e-14 Score=123.25 Aligned_cols=73 Identities=19% Similarity=0.120 Sum_probs=61.7
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh----hccCcEEEEccCCCCCCCCC
Q 008534 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHLT 245 (562)
Q Consensus 170 ~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~----~~~~~igyV~Q~~~l~~~lT 245 (562)
+.+|++++|++++|++++|+||||||||||++++. +|++.++|.++.. ..++.++|++|+ +|. .|
T Consensus 2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~--------~G~i~~~g~di~~~~~~~~~~~~~~~~q~--lf~-~t 70 (107)
T cd00820 2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI--------KRKHRLVGDDNVEIREDSKDELIGRNPEL--GLE-IR 70 (107)
T ss_pred ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh--------CCeEEEeeEeHHHhhhhhcCCEEEEechh--cch-hh
Confidence 46899999999999999999999999999999986 5889999998742 345557788777 564 59
Q ss_pred HHHHHHHH
Q 008534 246 VKETLTYA 253 (562)
Q Consensus 246 V~enl~~~ 253 (562)
|+|||.++
T Consensus 71 i~~Ni~~~ 78 (107)
T cd00820 71 LRLNIFLI 78 (107)
T ss_pred HHhhceee
Confidence 99999874
|
It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural |
| >PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression [] | Back alignment and domain information |
|---|
Probab=99.44 E-value=9.6e-13 Score=129.79 Aligned_cols=88 Identities=27% Similarity=0.480 Sum_probs=64.2
Q ss_pred HHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC
Q 008534 269 KRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEII----INPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA 344 (562)
Q Consensus 269 ~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl----~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~ 344 (562)
..+.+.+....+.. ..||||||.+++||--|+ .+.+++|||||.++||...+..+.++|+++.+
T Consensus 121 ~~~~~~l~~~~i~~-----------~~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~- 188 (220)
T PF02463_consen 121 KDLEELLPEVGISP-----------EFLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSK- 188 (220)
T ss_dssp HHHHHHHHCTTTTT-----------TGS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTT-
T ss_pred cccccccccccccc-----------cccccccccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence 34455666555532 269999999999997764 46799999999999999999999999999864
Q ss_pred CcEEEEEecCCChHHHhcCCEEEEEc
Q 008534 345 GKTVVTTIHQPSSRLFHKFDKLILLG 370 (562)
Q Consensus 345 g~Tvii~tH~~~~~i~~~~D~i~vL~ 370 (562)
+.=+|++||++ .++..+|+.+.+.
T Consensus 189 ~~Q~ii~Th~~--~~~~~a~~~~~v~ 212 (220)
T PF02463_consen 189 QSQFIITTHNP--EMFEDADKLIGVT 212 (220)
T ss_dssp TSEEEEE-S-H--HHHTT-SEEEEEE
T ss_pred ccccccccccc--ccccccccccccc
Confidence 46789999995 4688899887653
|
The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A .... |
| >TIGR01069 mutS2 MutS2 family protein | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.5e-13 Score=158.39 Aligned_cols=131 Identities=20% Similarity=0.239 Sum_probs=90.9
Q ss_pred ceEEEEeCC-eEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEccCCC-CCCCCCHHHHHHH
Q 008534 175 GITGSVNPG-EVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDV-LFPHLTVKETLTY 252 (562)
Q Consensus 175 ~vs~~i~~G-e~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~~~igyV~Q~~~-l~~~lTV~enl~~ 252 (562)
.+|+.+.++ ++++|.||||+|||||||+|+|...- +..| .+||.... .+ .+.+.+..
T Consensus 313 p~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~-aq~G-----------------~~Vpa~~~~~~---~~~d~i~~ 371 (771)
T TIGR01069 313 PFTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALM-FQSG-----------------IPIPANEHSEI---PYFEEIFA 371 (771)
T ss_pred eceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHH-HHhC-----------------CCccCCccccc---cchhheee
Confidence 378888887 99999999999999999999984211 1122 13333321 11 11111110
Q ss_pred HHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 008534 253 AALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTAL 332 (562)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~ 332 (562)
.+... . .+.+ ....+|+|+++++.|++++ .+|+++|||||++|+|+....
T Consensus 372 --------~i~~~---~---si~~---------------~LStfS~~m~~~~~il~~~-~~~sLvLlDE~g~GtD~~eg~ 421 (771)
T TIGR01069 372 --------DIGDE---Q---SIEQ---------------NLSTFSGHMKNISAILSKT-TENSLVLFDELGAGTDPDEGS 421 (771)
T ss_pred --------ecChH---h---HHhh---------------hhhHHHHHHHHHHHHHHhc-CCCcEEEecCCCCCCCHHHHH
Confidence 00000 0 0111 1246999999999998877 799999999999999999999
Q ss_pred HH-HHHHHHHHHCCcEEEEEecCCC
Q 008534 333 RI-VQMLQDIAEAGKTVVTTIHQPS 356 (562)
Q Consensus 333 ~i-~~~L~~l~~~g~Tvii~tH~~~ 356 (562)
.+ ...|..+.+.|.++|++||+..
T Consensus 422 ala~aiLe~l~~~g~~viitTH~~e 446 (771)
T TIGR01069 422 ALAISILEYLLKQNAQVLITTHYKE 446 (771)
T ss_pred HHHHHHHHHHHhcCCEEEEECChHH
Confidence 88 5677788777999999999964
|
Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function. |
| >cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.43 E-value=9.7e-13 Score=129.98 Aligned_cols=132 Identities=18% Similarity=0.209 Sum_probs=87.1
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEccCCCCCC-CCCHHHH
Q 008534 171 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFP-HLTVKET 249 (562)
Q Consensus 171 ~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~~~igyV~Q~~~l~~-~lTV~en 249 (562)
.|-+|+++.=..+.+++|.||||+|||||||.|+....- ...|...... ...++|..|....+. ..++.++
T Consensus 17 ~vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~l-a~~G~~v~a~-------~~~~~~~d~i~~~l~~~~si~~~ 88 (213)
T cd03281 17 FVPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFL-AHIGSFVPAD-------SATIGLVDKIFTRMSSRESVSSG 88 (213)
T ss_pred eEcceEEecCCCceEEEEECCCCCChHHHHHHHHHHHHH-HhCCCeeEcC-------CcEEeeeeeeeeeeCCccChhhc
Confidence 345555553222379999999999999999999832111 1235433211 234777777533221 1111111
Q ss_pred HHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCC--hhHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 008534 250 LTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVS--GGERKRVCIGNEIIINPSLLFLDEPTSGLD 327 (562)
Q Consensus 250 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LS--GGqrqRv~IAraLl~~P~iLlLDEPTsgLD 327 (562)
+| .-|-||++++++++.+|+++|||||++|+|
T Consensus 89 ----------------------------------------------~S~f~~el~~l~~~l~~~~~~slvllDE~~~gtd 122 (213)
T cd03281 89 ----------------------------------------------QSAFMIDLYQVSKALRLATRRSLVLIDEFGKGTD 122 (213)
T ss_pred ----------------------------------------------cchHHHHHHHHHHHHHhCCCCcEEEeccccCCCC
Confidence 12 235689999999999999999999999999
Q ss_pred HHHHHHH-HHHHHHHHHC---CcEEEEEecCCC
Q 008534 328 STTALRI-VQMLQDIAEA---GKTVVTTIHQPS 356 (562)
Q Consensus 328 ~~~~~~i-~~~L~~l~~~---g~Tvii~tH~~~ 356 (562)
+.....+ ...++.+.+. +.++|++||++.
T Consensus 123 ~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~ 155 (213)
T cd03281 123 TEDGAGLLIATIEHLLKRGPECPRVIVSTHFHE 155 (213)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHH
Confidence 9765444 5678887654 248999999964
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase | Back alignment and domain information |
|---|
Probab=99.42 E-value=5.9e-13 Score=134.36 Aligned_cols=174 Identities=16% Similarity=0.206 Sum_probs=105.2
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEEC--CEe-CC-hhccC---cEEEEccCCCCCCCCCHHHHH
Q 008534 178 GSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYN--DHP-YS-KSLKS---KIGFVTQDDVLFPHLTVKETL 250 (562)
Q Consensus 178 ~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~--G~~-~~-~~~~~---~igyV~Q~~~l~~~lTV~enl 250 (562)
+.+..|+.++|+||+|+|||||++.|++..........+++- +.+ .. .++.+ .+-++.+-+. +....+
T Consensus 11 ~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~-----~~~~~~ 85 (249)
T cd01128 11 APIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDE-----PPERHV 85 (249)
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCC-----CHHHHH
Confidence 468899999999999999999999999755321111222221 111 11 11111 1222222221 111111
Q ss_pred HHHHhhCCCCCccHHHHHHHHHHHHH-----------HcCCCccccccccCcccCCCChhH--------HHHHHHHHHHh
Q 008534 251 TYAALLRLPNTLTKQQKEKRAIDVIN-----------ELGLERCQDTMIGGSFVRGVSGGE--------RKRVCIGNEII 311 (562)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~v~~~l~-----------~lgL~~~~~t~vg~~~~~~LSGGq--------rqRv~IAraLl 311 (562)
..... ..+.++...+ ...+...+++..+. ....+|||+ +||+++||++.
T Consensus 86 ~~~~~-----------~~~~a~~~~~~G~~vll~iDei~r~a~a~~ev~~~-~G~~~sgG~~~~~~~~~~q~~~~Ar~~~ 153 (249)
T cd01128 86 QVAEM-----------VLEKAKRLVEHGKDVVILLDSITRLARAYNTVVPP-SGKILSGGVDANALHKPKRFFGAARNIE 153 (249)
T ss_pred HHHHH-----------HHHHHHHHHHCCCCEEEEEECHHHhhhhhhhcccc-CCCCCCCCcChhhhhhhHHHHHHhcCCC
Confidence 11000 0000010000 00122333443332 335689999 99999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHH-HHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeE
Q 008534 312 INPSLLFLDEPTSGLDSTTALR-IVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374 (562)
Q Consensus 312 ~~P~iLlLDEPTsgLD~~~~~~-i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~i 374 (562)
.+++|.+| ||+.+|+.+... ++ +.++...+.|.|+++|++.. ...+|.|.||+.|++
T Consensus 154 ~~gsIt~l--~T~~~d~~~~~~~~i--~~~~~~~~~~~ivls~~la~--~~~~paI~vl~s~sr 211 (249)
T cd01128 154 EGGSLTII--ATALVDTGSRMDDVI--FEEFKGTGNMELVLDRRLAE--RRIFPAIDILKSGTR 211 (249)
T ss_pred CCCceEEe--eeheecCCCcccchH--HHHHhcCCCcEEEEchHHhh--CCCCCeEEEcCCCCc
Confidence 99999999 999999766554 54 55555457899999999875 578999999999997
|
It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain. |
| >PTZ00132 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=8e-13 Score=129.89 Aligned_cols=48 Identities=21% Similarity=0.328 Sum_probs=44.2
Q ss_pred CChh--HHHHHHHHHHHhhCCCEEEEeCCC-----CCCCHHHHHHHHHHHHHHHH
Q 008534 296 VSGG--ERKRVCIGNEIIINPSLLFLDEPT-----SGLDSTTALRIVQMLQDIAE 343 (562)
Q Consensus 296 LSGG--qrqRv~IAraLl~~P~iLlLDEPT-----sgLD~~~~~~i~~~L~~l~~ 343 (562)
.+|+ |++++.||++++.+|+++++|||| ++||+.++..+.+.++++++
T Consensus 151 ~~~~~v~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~~ 205 (215)
T PTZ00132 151 KSNYNFEKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAAN 205 (215)
T ss_pred CCCCCHHHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHhh
Confidence 4444 999999999999999999999999 99999999999999999864
|
|
| >PRK07721 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.5e-11 Score=133.16 Aligned_cols=174 Identities=20% Similarity=0.274 Sum_probs=113.4
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeC---Ch---------hccCcEEEEcc
Q 008534 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPY---SK---------SLKSKIGFVTQ 236 (562)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~---~~---------~~~~~igyV~Q 236 (562)
+..+++++ +.+.+|++++|+|+||+|||||+++|+|.. . +..|.|.+.|+.- .+ .+++.|.+|.+
T Consensus 145 g~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~-~-~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~ 221 (438)
T PRK07721 145 GVRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNT-S-ADLNVIALIGERGREVREFIERDLGPEGLKRSIVVVAT 221 (438)
T ss_pred chhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhccc-C-CCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEEC
Confidence 45689999 999999999999999999999999999854 3 4579999865432 21 24567889976
Q ss_pred CCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHH-HHHhhCCC
Q 008534 237 DDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG-NEIIINPS 315 (562)
Q Consensus 237 ~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA-raLl~~P~ 315 (562)
.+.-. -.+....+.+ ..+.|.+..-|- |-++- ..+++ |.+-| |++.
T Consensus 222 ~~~~~---~~r~~~~~~a--------------~~iAEyfr~~g~----~Vll~---~Dslt-----r~A~A~rEis---- 268 (438)
T PRK07721 222 SDQPA---LMRIKGAYTA--------------TAIAEYFRDQGL----NVMLM---MDSVT-----RVAMAQREIG---- 268 (438)
T ss_pred CCCCH---HHHHHHHHHH--------------HHHHHHHHHCCC----cEEEE---EeChH-----HHHHHHHHHH----
Confidence 54211 1111111111 012222222221 21111 01111 11111 1111
Q ss_pred EEEEeCC--CCCCCHHHHHHHHHHHHHHHH--CCc-----EEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHH
Q 008534 316 LLFLDEP--TSGLDSTTALRIVQMLQDIAE--AGK-----TVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (562)
Q Consensus 316 iLlLDEP--TsgLD~~~~~~i~~~L~~l~~--~g~-----Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~e 382 (562)
+.+.|| |+|+||.....+.+.++++.. .|. ||++.+|++++ .+||++.+|.+|+|+..++..+
T Consensus 269 -l~~ge~P~~~G~dp~~~~~l~~ller~~~~~~GsIT~~~TVlv~~hdm~e---~i~d~v~~i~dG~Ivls~~la~ 340 (438)
T PRK07721 269 -LAVGEPPTTKGYTPSVFAILPKLLERTGTNASGSITAFYTVLVDGDDMNE---PIADTVRGILDGHFVLDRQLAN 340 (438)
T ss_pred -HhcCCCCccccCCHHHHHHHHHHHHHhcCCCCCCeeeEEEEEEECCCCCc---hhhhhEEEecCEEEEEeccHHH
Confidence 122454 679999999999999999873 575 99999999874 6799999999999999998765
|
|
| >TIGR00634 recN DNA repair protein RecN | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.2e-12 Score=144.74 Aligned_cols=77 Identities=26% Similarity=0.400 Sum_probs=70.0
Q ss_pred CCCChhHHHHHHHHHHHhhC----CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEE
Q 008534 294 RGVSGGERKRVCIGNEIIIN----PSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL 369 (562)
Q Consensus 294 ~~LSGGqrqRv~IAraLl~~----P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL 369 (562)
+.+||||+||++||++++.. |++|||||||+|||+.++..+.+.|+++++ +++||++||++. +...||++++|
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~-~~~vi~iTH~~~--~~~~ad~~~~l 515 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSE-RHQVLCVTHLPQ--VAAHADAHFKV 515 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEEChHH--HHHhcCeEEEE
Confidence 46899999999999999985 699999999999999999999999999975 899999999975 34689999999
Q ss_pred cCCe
Q 008534 370 GKGS 373 (562)
Q Consensus 370 ~~G~ 373 (562)
++|.
T Consensus 516 ~k~~ 519 (563)
T TIGR00634 516 EKEG 519 (563)
T ss_pred EEcc
Confidence 8864
|
All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair. |
| >cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.2e-11 Score=123.04 Aligned_cols=135 Identities=19% Similarity=0.203 Sum_probs=85.6
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHH
Q 008534 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKE 248 (562)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~~~igyV~Q~~~l~~~lTV~e 248 (562)
.+.+.+|+++.+.+|++++|.||||+||||++++|++.... +..|.....- .-.++|..|= |..+...|
T Consensus 17 ~~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~l-a~~G~~v~a~-------~~~~~~~~~i---~~~~~~~d 85 (222)
T cd03287 17 KSFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIM-AQIGSFVPAS-------SATLSIFDSV---LTRMGASD 85 (222)
T ss_pred CCEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHH-HhCCCEEEcC-------ceEEeccceE---EEEecCcc
Confidence 35789999999999999999999999999999999983221 3356543221 1123333331 11111111
Q ss_pred HHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCC--hhHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 008534 249 TLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVS--GGERKRVCIGNEIIINPSLLFLDEPTSGL 326 (562)
Q Consensus 249 nl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LS--GGqrqRv~IAraLl~~P~iLlLDEPTsgL 326 (562)
++.- ++| ..|-+|++-...-+.+|+++|||||.+|.
T Consensus 86 ~~~~------------------------------------------~~StF~~e~~~~~~il~~~~~~sLvllDE~~~gT 123 (222)
T cd03287 86 SIQH------------------------------------------GMSTFMVELSETSHILSNCTSRSLVILDELGRGT 123 (222)
T ss_pred cccc------------------------------------------ccchHHHHHHHHHHHHHhCCCCeEEEEccCCCCC
Confidence 1110 011 11223333333334579999999999998
Q ss_pred CHHHHHHH-HHHHHHHHHC-CcEEEEEecCCC
Q 008534 327 DSTTALRI-VQMLQDIAEA-GKTVVTTIHQPS 356 (562)
Q Consensus 327 D~~~~~~i-~~~L~~l~~~-g~Tvii~tH~~~ 356 (562)
|+.....+ ...++.+.+. +.++|++||++.
T Consensus 124 ~~~d~~~i~~~il~~l~~~~~~~~i~~TH~~~ 155 (222)
T cd03287 124 STHDGIAIAYATLHYLLEEKKCLVLFVTHYPS 155 (222)
T ss_pred ChhhHHHHHHHHHHHHHhccCCeEEEEcccHH
Confidence 87766664 4566676665 889999999965
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >TIGR00618 sbcc exonuclease SbcC | Back alignment and domain information |
|---|
Probab=99.30 E-value=6e-12 Score=150.60 Aligned_cols=81 Identities=21% Similarity=0.239 Sum_probs=73.8
Q ss_pred cccCCCChhHHHHHHHHHHHhh----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHH
Q 008534 291 SFVRGVSGGERKRVCIGNEIII----------NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLF 360 (562)
Q Consensus 291 ~~~~~LSGGqrqRv~IAraLl~----------~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~ 360 (562)
..++.|||||++||+||+||+. +|++|||||||+|||+.+...+++.|+.+...|++|+||||++. ...
T Consensus 946 r~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~iisH~~~-~~~ 1024 (1042)
T TIGR00618 946 RPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIISHVPE-FRE 1024 (1042)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHH-HHH
Confidence 4568899999999999999986 79999999999999999999999999999878999999999975 467
Q ss_pred hcCCEEEEEcCC
Q 008534 361 HKFDKLILLGKG 372 (562)
Q Consensus 361 ~~~D~i~vL~~G 372 (562)
.++|+|.|++.|
T Consensus 1025 ~~~~~i~v~~~~ 1036 (1042)
T TIGR00618 1025 RIPHRILVKKTN 1036 (1042)
T ss_pred hhCCEEEEEECC
Confidence 889999999754
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK10869 recombination and repair protein; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=7.5e-12 Score=139.84 Aligned_cols=77 Identities=23% Similarity=0.397 Sum_probs=69.5
Q ss_pred CCCChhHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEE
Q 008534 294 RGVSGGERKRVCIGNEIII----NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL 369 (562)
Q Consensus 294 ~~LSGGqrqRv~IAraLl~----~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL 369 (562)
+.+||||+|||+||++++. +|+++|||||++|||..++..+.+.|+++++ +.+||+|||+|. +...||+.+++
T Consensus 429 k~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~-~~qvi~iTH~~~--~~~~ad~~~~v 505 (553)
T PRK10869 429 KVASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGE-STQVMCVTHLPQ--VAGCGHQHFFV 505 (553)
T ss_pred hhCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH--HHHhCCEEEEE
Confidence 3589999999999999997 5899999999999999999999999999975 789999999985 45899999999
Q ss_pred cCCe
Q 008534 370 GKGS 373 (562)
Q Consensus 370 ~~G~ 373 (562)
.++.
T Consensus 506 ~k~~ 509 (553)
T PRK10869 506 SKET 509 (553)
T ss_pred eccc
Confidence 8753
|
|
| >PHA02562 46 endonuclease subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.3e-12 Score=142.11 Aligned_cols=78 Identities=24% Similarity=0.398 Sum_probs=69.1
Q ss_pred cCCCChhHHHHHHHHHHHh----------hCCCEEEEeCCC-CCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHh
Q 008534 293 VRGVSGGERKRVCIGNEII----------INPSLLFLDEPT-SGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFH 361 (562)
Q Consensus 293 ~~~LSGGqrqRv~IAraLl----------~~P~iLlLDEPT-sgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~ 361 (562)
+..||||||||++||++|+ .+|++||||||| ++||+.....+.+.|+++ .|.|||++||++. +..
T Consensus 466 ~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~--~~~~iiiish~~~--~~~ 541 (562)
T PHA02562 466 YASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSL--KDTNVFVISHKDH--DPQ 541 (562)
T ss_pred hhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhC--CCCeEEEEECchh--chh
Confidence 4679999999999999987 599999999998 789999999999999998 4889999999964 457
Q ss_pred cCCEEEEEcC-CeE
Q 008534 362 KFDKLILLGK-GSL 374 (562)
Q Consensus 362 ~~D~i~vL~~-G~i 374 (562)
.||++++|.+ |+.
T Consensus 542 ~~d~~~~l~~~~~~ 555 (562)
T PHA02562 542 KFDRHLKMEKVGRF 555 (562)
T ss_pred hhhcEEEEEEECCe
Confidence 7999999986 543
|
|
| >KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.28 E-value=8.1e-12 Score=131.01 Aligned_cols=169 Identities=28% Similarity=0.404 Sum_probs=117.0
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh--------h------------ccC--cEEEEccCC
Q 008534 181 NPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--------S------------LKS--KIGFVTQDD 238 (562)
Q Consensus 181 ~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--------~------------~~~--~igyV~Q~~ 238 (562)
.||++.+++|.||-||||-+++++|++. |+. |.- .++-+... + ++. +.-||.|-|
T Consensus 98 rpg~vlglvgtngigkstAlkilagk~k-pnl-g~~-~~pp~w~~il~~frgselq~yftk~le~~lk~~~kpQyvd~ip 174 (592)
T KOG0063|consen 98 RPGQVLGLVGTNGIGKSTALKILAGKQK-PNL-GRY-DNPPDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQYVDQIP 174 (592)
T ss_pred CcchhccccccCcccHHHHHHHHhCCCC-CCC-CCC-CCCcchHHHhhhhhhHHHhhhhhhhccccccCcCChHHHHHHH
Confidence 5899999999999999999999999875 332 211 01111100 0 000 011222211
Q ss_pred CCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCEEE
Q 008534 239 VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLF 318 (562)
Q Consensus 239 ~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLl 318 (562)
... ..+|.++|. .........++++.+.|....+.. +..|||||-||.+||.+-+.+.++.+
T Consensus 175 r~~-k~~v~~~l~------------~~~~r~~~~~~~~~~~L~~~~~re-----~~~lsggelqrfaia~~~vq~advyM 236 (592)
T KOG0063|consen 175 RAV-KGTVGSLLD------------RKDERDNKEEVCDQLDLNNLLDRE-----VEQLSGGELQRFAIAMVCVQKADVYM 236 (592)
T ss_pred HHH-HHHHHHHHH------------HHhhcccHHHHHHHHHHhhHHHhh-----hhhcccchhhhhhhhhhhhhhcceeE
Confidence 111 113333332 112222455677777777666654 35899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcC
Q 008534 319 LDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK 371 (562)
Q Consensus 319 LDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~ 371 (562)
+|||.+-||...+..--..++.+....+=||++.||++- +--+.|-|++|..
T Consensus 237 FDEpSsYLDVKQRLkaA~~IRsl~~p~~YiIVVEHDLsV-LDylSDFiCcLYG 288 (592)
T KOG0063|consen 237 FDEPSSYLDVKQRLKAAITIRSLINPDRYIIVVEHDLSV-LDYLSDFICCLYG 288 (592)
T ss_pred ecCCcccchHHHhhhHHHHHHHhhCCCCeEEEEEeechH-HHhhhcceeEEec
Confidence 999999999999999999999998888999999999874 4446788888864
|
|
| >PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.6e-12 Score=147.35 Aligned_cols=81 Identities=19% Similarity=0.210 Sum_probs=63.9
Q ss_pred CCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCC
Q 008534 294 RGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQ-MLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKG 372 (562)
Q Consensus 294 ~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~-~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G 372 (562)
..+|+|++|++.|++++ .+|+++|||||++|+|+.....+.. .+..+.+.|.++|++||++.. ....+|+..++ ++
T Consensus 389 StfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~el-~~~~~~~~~v~-~~ 465 (782)
T PRK00409 389 STFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKEL-KALMYNREGVE-NA 465 (782)
T ss_pred hHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHHH-HHHHhcCCCeE-EE
Confidence 57999999999999998 8999999999999999999888864 566777778999999999542 33344555444 55
Q ss_pred eEEEe
Q 008534 373 SLLYF 377 (562)
Q Consensus 373 ~iv~~ 377 (562)
.+.+.
T Consensus 466 ~~~~d 470 (782)
T PRK00409 466 SVEFD 470 (782)
T ss_pred EEEEe
Confidence 65553
|
|
| >COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.25 E-value=5.6e-11 Score=133.10 Aligned_cols=138 Identities=23% Similarity=0.386 Sum_probs=103.0
Q ss_pred CCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHH------HHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhC-
Q 008534 241 FPHLTVKETLTYAALLRLPNTLTKQQKEKRAID------VINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIIN- 313 (562)
Q Consensus 241 ~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~------~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~- 313 (562)
+..|++.+.+.|...+.+... .....+..+.+ +|-.+||... -.++...+|||||.||+-||..|=.+
T Consensus 426 ~~~msi~~~~~f~~~l~l~~~-~~~ia~~ilkei~~RL~fL~~VGL~YL----tL~R~a~TLSGGEaQRIRLAtqiGS~L 500 (935)
T COG0178 426 ISEMSIADALEFFENLKLSEK-EKKIAEPILKEIKERLGFLVDVGLGYL----TLSRSAGTLSGGEAQRIRLATQIGSGL 500 (935)
T ss_pred HhhccHHHHHHHHHhCCCchh-hHHHHHHHHHHHHHHHHHHHHcCcCcc----cccccCCCcChhHHHHHHHHHHhcccc
Confidence 335778888887765542211 11111112222 3344566532 12344568999999999999999765
Q ss_pred -CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEE------cCCeEEEecChHHHHH
Q 008534 314 -PSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL------GKGSLLYFGKASEAMA 385 (562)
Q Consensus 314 -P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL------~~G~iv~~G~~~el~~ 385 (562)
-=+++||||+.||-+..-.++++.|++|.+.|-|+|+|.||.+ .+..||+|+=| +.|+|++.|+++++++
T Consensus 501 tGVlYVLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEHDed--ti~~AD~iIDiGPgAG~~GGeIv~~Gtp~~i~~ 577 (935)
T COG0178 501 TGVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEHDED--TIRAADHIIDIGPGAGEHGGEIVAEGTPEELLA 577 (935)
T ss_pred eeeEEEecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEecCHH--HHhhcCEEEeeCCCCCcCCCEEEEccCHHHHHh
Confidence 3568999999999999999999999999999999999999954 57889999987 5789999999999875
|
|
| >PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A | Back alignment and domain information |
|---|
Probab=99.19 E-value=3.2e-11 Score=117.29 Aligned_cols=64 Identities=22% Similarity=0.489 Sum_probs=53.9
Q ss_pred cCCCChhHHHHHHHHHHHhhCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCC
Q 008534 293 VRGVSGGERKRVCIGNEIIINP---SLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPS 356 (562)
Q Consensus 293 ~~~LSGGqrqRv~IAraLl~~P---~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~ 356 (562)
...+|.|+||.+.|+..|...+ .++++|||-++|+|..+..+++.|+++.+.+.-+|++||.|.
T Consensus 234 ~~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTHSp~ 300 (303)
T PF13304_consen 234 LSSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTHSPF 300 (303)
T ss_dssp GS---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES-GG
T ss_pred eccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCccch
Confidence 3457999999999999988776 999999999999999999999999887765789999999864
|
|
| >cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.6e-10 Score=108.97 Aligned_cols=79 Identities=19% Similarity=0.097 Sum_probs=64.5
Q ss_pred ccCCCChhHHH------HHHHHHHHhhCCCEEEEeCCCCCCC---HHHHHHHHHHHHHHHHCCcEEEEEecCCCh-----
Q 008534 292 FVRGVSGGERK------RVCIGNEIIINPSLLFLDEPTSGLD---STTALRIVQMLQDIAEAGKTVVTTIHQPSS----- 357 (562)
Q Consensus 292 ~~~~LSGGqrq------Rv~IAraLl~~P~iLlLDEPTsgLD---~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~----- 357 (562)
.+..+|+|++| +.....+...+|+++++|||++.+| ......+.+.++.+++.|.|+|+++|....
T Consensus 68 ~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g~tvi~v~~~~~~~~~~~ 147 (187)
T cd01124 68 DPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTTLLTSEQSGLEGTGF 147 (187)
T ss_pred CccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCCCEEEEEeccccCCCccc
Confidence 34578999998 4555555667999999999999999 888888888998888889999999998653
Q ss_pred ---HHHhcCCEEEEEc
Q 008534 358 ---RLFHKFDKLILLG 370 (562)
Q Consensus 358 ---~i~~~~D~i~vL~ 370 (562)
.+..+||.|+.|+
T Consensus 148 ~~~~~~~~aD~ii~l~ 163 (187)
T cd01124 148 GGGDVEYLVDGVIRLR 163 (187)
T ss_pred CcCceeEeeeEEEEEE
Confidence 1457789999886
|
A related protein is found in archaea. |
| >cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.17 E-value=5.3e-11 Score=117.97 Aligned_cols=137 Identities=18% Similarity=0.225 Sum_probs=88.5
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHH
Q 008534 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKE 248 (562)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~~~igyV~Q~~~l~~~lTV~e 248 (562)
++.|-+|+++.+++|++++|.||||+||||+++.+++...- ..-| ..+... ...++++ +.+|..+...|
T Consensus 16 ~~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~l-a~~G------~~vpa~-~~~i~~~---~~i~~~~~~~d 84 (218)
T cd03286 16 SSFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIM-AQMG------MDVPAK-SMRLSLV---DRIFTRIGARD 84 (218)
T ss_pred CCeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHH-HHcC------CccCcc-ccEeccc---cEEEEecCccc
Confidence 45789999999999999999999999999999999974221 0112 122111 1112222 22333333333
Q ss_pred HHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 008534 249 TLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDS 328 (562)
Q Consensus 249 nl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~ 328 (562)
++..+. + .+. -|-+|++-....+.+|+++|||||++|+|+
T Consensus 85 ~~~~~~--------S-------------------------------tF~-~e~~~~~~il~~~~~~sLvLlDE~~~Gt~~ 124 (218)
T cd03286 85 DIMKGE--------S-------------------------------TFM-VELSETANILRHATPDSLVILDELGRGTST 124 (218)
T ss_pred ccccCc--------c-------------------------------hHH-HHHHHHHHHHHhCCCCeEEEEecccCCCCc
Confidence 332210 0 000 123333333333467999999999999999
Q ss_pred HHHHHHHHH-HHHHHHC-CcEEEEEecCCC
Q 008534 329 TTALRIVQM-LQDIAEA-GKTVVTTIHQPS 356 (562)
Q Consensus 329 ~~~~~i~~~-L~~l~~~-g~Tvii~tH~~~ 356 (562)
.....+... ++.+.+. +.++|++||++.
T Consensus 125 ~dg~~la~ail~~L~~~~~~~~i~~TH~~e 154 (218)
T cd03286 125 HDGYAIAHAVLEYLVKKVKCLTLFSTHYHS 154 (218)
T ss_pred hHHHHHHHHHHHHHHHhcCCcEEEEeccHH
Confidence 998888887 6777765 899999999964
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >PRK08533 flagellar accessory protein FlaH; Reviewed | Back alignment and domain information |
|---|
Probab=99.17 E-value=3.8e-10 Score=112.78 Aligned_cols=150 Identities=19% Similarity=0.255 Sum_probs=91.4
Q ss_pred EEeCCeEEEEECCCCCcHHHH-HHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHHHHHHHHhhC
Q 008534 179 SVNPGEVLALMGPSGSGKTTL-LNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLR 257 (562)
Q Consensus 179 ~i~~Ge~~alvGpsGsGKSTL-l~~L~G~l~~~~~~G~I~i~G~~~~~~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~ 257 (562)
-+++|++++|.|||||||||| ++++++... .| ..+.|+..+ .+..+.+.....+.
T Consensus 20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~----~g--------------~~~~yi~~e------~~~~~~~~~~~~~g 75 (230)
T PRK08533 20 GIPAGSLILIEGDESTGKSILSQRLAYGFLQ----NG--------------YSVSYVSTQ------LTTTEFIKQMMSLG 75 (230)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHh----CC--------------CcEEEEeCC------CCHHHHHHHHHHhC
Confidence 389999999999999999999 688886332 12 124555532 34555555433221
Q ss_pred CCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhh----CCCEEEEeCCCCCC----CHH
Q 008534 258 LPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIII----NPSLLFLDEPTSGL----DST 329 (562)
Q Consensus 258 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~----~P~iLlLDEPTsgL----D~~ 329 (562)
. . +++.... +.-...+ .. ..+|+++.++-.+.+.+-. +|+++++||||+++ |+.
T Consensus 76 ~--~---------~~~~~~~-~~l~~~~-----~~-~~~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~~ 137 (230)
T PRK08533 76 Y--D---------INKKLIS-GKLLYIP-----VY-PLLSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDASEV 137 (230)
T ss_pred C--c---------hHHHhhc-CcEEEEE-----ec-ccccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcchH
Confidence 1 0 0111110 0000001 01 2367776666555544433 69999999999999 888
Q ss_pred HHHHHHHHHHHHHHCCcEEEEEecCCCh------HHHhcCCEEEEEc
Q 008534 330 TALRIVQMLQDIAEAGKTVVTTIHQPSS------RLFHKFDKLILLG 370 (562)
Q Consensus 330 ~~~~i~~~L~~l~~~g~Tvii~tH~~~~------~i~~~~D~i~vL~ 370 (562)
....+++.++.+++.|.|+++++|.... .+..+||-|+.|+
T Consensus 138 ~~~~l~~~l~~l~~~g~tvi~t~~~~~~~~~~~~~~~~~~DgvI~L~ 184 (230)
T PRK08533 138 AVNDLMAFFKRISSLNKVIILTANPKELDESVLTILRTAATMLIRLE 184 (230)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEecccccccccceeEEEeeeEEEEEE
Confidence 8889999999998778877776554210 0123467777775
|
|
| >PRK03918 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=6.2e-11 Score=139.58 Aligned_cols=78 Identities=28% Similarity=0.330 Sum_probs=68.6
Q ss_pred ccCCCChhHHH------HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCE
Q 008534 292 FVRGVSGGERK------RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDK 365 (562)
Q Consensus 292 ~~~~LSGGqrq------Rv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~ 365 (562)
.+..|||||++ |++||++++.+|+++||||||++||+..+..+.+.|..+...+.+||++||++. +...||+
T Consensus 785 ~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~~~iiiith~~~--~~~~~d~ 862 (880)
T PRK03918 785 PLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVSHDEE--LKDAADY 862 (880)
T ss_pred ChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcCCEEEEEECCHH--HHHhCCe
Confidence 45789999999 555666788999999999999999999999999999998766789999999963 5688999
Q ss_pred EEEEcC
Q 008534 366 LILLGK 371 (562)
Q Consensus 366 i~vL~~ 371 (562)
+++|+.
T Consensus 863 ~~~l~~ 868 (880)
T PRK03918 863 VIRVSL 868 (880)
T ss_pred EEEEEe
Confidence 999983
|
|
| >PRK13695 putative NTPase; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.2e-11 Score=116.07 Aligned_cols=79 Identities=13% Similarity=0.201 Sum_probs=64.1
Q ss_pred CCCChhHHHHHHHHHHHhhCCCEEEEeCC--CCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcC
Q 008534 294 RGVSGGERKRVCIGNEIIINPSLLFLDEP--TSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK 371 (562)
Q Consensus 294 ~~LSGGqrqRv~IAraLl~~P~iLlLDEP--TsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~ 371 (562)
..+||+++-++.+++..+.+|++|++||| +.++|+ .+.+.+.++.+.++++|+++|+. .+...+|+|..+.+
T Consensus 77 ~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~----~~~~~l~~~~~~~~~~i~v~h~~--~~~~~~~~i~~~~~ 150 (174)
T PRK13695 77 VNLEDLERIGIPALERALEEADVIIIDEIGKMELKSP----KFVKAVEEVLDSEKPVIATLHRR--SVHPFVQEIKSRPG 150 (174)
T ss_pred EehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhhH----HHHHHHHHHHhCCCeEEEEECch--hhHHHHHHHhccCC
Confidence 46999999999999999999999999995 445543 45666666666789999999984 24567999999999
Q ss_pred CeEEEec
Q 008534 372 GSLLYFG 378 (562)
Q Consensus 372 G~iv~~G 378 (562)
|++++.-
T Consensus 151 ~~i~~~~ 157 (174)
T PRK13695 151 GRVYELT 157 (174)
T ss_pred cEEEEEc
Confidence 9997763
|
|
| >TIGR00606 rad50 rad50 | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.1e-10 Score=142.58 Aligned_cols=110 Identities=16% Similarity=0.217 Sum_probs=78.3
Q ss_pred CCCCCHHHHHHHHHhhCCCCCccHH---HHHHHHHHHHHHcCCCccccccccCcccCCCChhHHH------HHHHHHHHh
Q 008534 241 FPHLTVKETLTYAALLRLPNTLTKQ---QKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK------RVCIGNEII 311 (562)
Q Consensus 241 ~~~lTV~enl~~~~~~~~~~~~~~~---~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrq------Rv~IAraLl 311 (562)
|. .|+.+||.+ . +. .+.. ....+..+++.. +... ++.++. ...||||||| |++|||+|+
T Consensus 1154 ~~-~~~~~~i~~-~----~~-~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~--~~~lS~Gq~~~~~~~~rlala~~~~ 1221 (1311)
T TIGR00606 1154 YR-GQDIEYIEI-R----SD-ADENVSASDKRRNYNYRVV--MLKG-DTALDM--RGRCSAGQKVLASLIIRLALAETFC 1221 (1311)
T ss_pred cC-ccHHHHhhc-C----CC-CChHHHHHHHcCchHHHhc--cCCC-CeecCC--CCCCchhhhhHhhHhHHHHHHHHHh
Confidence 44 599999997 2 11 1111 111223333322 2333 555542 3579999999 999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-----CCcEEEEEecCCChHHHhcC
Q 008534 312 INPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-----AGKTVVTTIHQPSSRLFHKF 363 (562)
Q Consensus 312 ~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-----~g~Tvii~tH~~~~~i~~~~ 363 (562)
.+|+||+|||||+|||+.+...+.+.|..+.. .|.|||+|||++.. +..+|
T Consensus 1222 ~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~~-~~~~~ 1277 (1311)
T TIGR00606 1222 LNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDEDF-VELLG 1277 (1311)
T ss_pred cCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHHH-HHHHh
Confidence 99999999999999999999999999988742 37899999999753 44443
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK10246 exonuclease subunit SbcC; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.9e-10 Score=137.54 Aligned_cols=80 Identities=25% Similarity=0.220 Sum_probs=69.6
Q ss_pred cccCCCChhHHHHHHHHHHHhh--------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhc
Q 008534 291 SFVRGVSGGERKRVCIGNEIII--------NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHK 362 (562)
Q Consensus 291 ~~~~~LSGGqrqRv~IAraLl~--------~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~ 362 (562)
..+..|||||+++++||+||+. +|++||+||||++||+.+...+++.|..+.+.|+||+||||... ...++
T Consensus 945 r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH~~~-l~~~i 1023 (1047)
T PRK10246 945 RDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVEA-MKERI 1023 (1047)
T ss_pred CCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEecHHH-HHHhc
Confidence 4568999999999999999996 89999999999999999999999999999888999999999743 24455
Q ss_pred CCEEEEEcC
Q 008534 363 FDKLILLGK 371 (562)
Q Consensus 363 ~D~i~vL~~ 371 (562)
..+|.|-..
T Consensus 1024 ~~qi~V~k~ 1032 (1047)
T PRK10246 1024 PVQIKVKKI 1032 (1047)
T ss_pred cceEEEEEC
Confidence 667777654
|
|
| >PRK13830 conjugal transfer protein TrbE; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.8e-09 Score=126.10 Aligned_cols=78 Identities=24% Similarity=0.227 Sum_probs=64.9
Q ss_pred hhCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHHCCcEEEEEecCCChHH--------HhcCCEEEEEcCCeEEEecChH
Q 008534 311 IINPSLLFLDEPTSGL-DSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRL--------FHKFDKLILLGKGSLLYFGKAS 381 (562)
Q Consensus 311 l~~P~iLlLDEPTsgL-D~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i--------~~~~D~i~vL~~G~iv~~G~~~ 381 (562)
..+|.++++|||+.+| |+..+..+.+.++.+.+.|.++|++||++.... .+.||.+++|.+|++...|..
T Consensus 650 ~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~~~~vil~Tq~~~d~~~s~~a~~i~~~~~t~i~L~n~~a~~~~~~- 728 (818)
T PRK13830 650 TGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKANCAVVLATQSISDAERSGIIDVLKESCPTKICLPNGAAREPGTR- 728 (818)
T ss_pred CCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhcCchHHHHHhcCCeEEECCCccccccchH-
Confidence 4799999999999999 799999999999999888999999999986521 367999999999998777643
Q ss_pred HHHHHHHhcCC
Q 008534 382 EAMAYFSSIGC 392 (562)
Q Consensus 382 el~~~f~~~g~ 392 (562)
++++.+|+
T Consensus 729 ---~~~~~~gl 736 (818)
T PRK13830 729 ---EFYERIGF 736 (818)
T ss_pred ---HHHHHcCC
Confidence 34455554
|
|
| >TIGR02788 VirB11 P-type DNA transfer ATPase VirB11 | Back alignment and domain information |
|---|
Probab=99.07 E-value=4.3e-10 Score=117.16 Aligned_cols=143 Identities=19% Similarity=0.228 Sum_probs=93.5
Q ss_pred eEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEe-CChhccCcEEEEccCCCCCCCCCHHHHHHHHH
Q 008534 176 ITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP-YSKSLKSKIGFVTQDDVLFPHLTVKETLTYAA 254 (562)
Q Consensus 176 vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~-~~~~~~~~igyV~Q~~~l~~~lTV~enl~~~~ 254 (562)
+++.+++|+.++|+||+|||||||+++|++.+. +..|.+.+.... +....+..+.++.+... .
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~--~~~~iv~ied~~El~~~~~~~~~l~~~~~~--~------------ 200 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIP--KDERIITIEDTREIFLPHPNYVHLFYSKGG--Q------------ 200 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCC--ccccEEEEcCccccCCCCCCEEEEEecCCC--C------------
Confidence 667899999999999999999999999998553 445666664311 00000112222221100 0
Q ss_pred hhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 008534 255 LLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRI 334 (562)
Q Consensus 255 ~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i 334 (562)
+ ...++ ..-.++.+|-.+|+++++|||.+ .++
T Consensus 201 ------------------------~-------------~~~~~----~~~~l~~~Lr~~pd~ii~gE~r~-------~e~ 232 (308)
T TIGR02788 201 ------------------------G-------------LAKVT----PKDLLQSCLRMRPDRIILGELRG-------DEA 232 (308)
T ss_pred ------------------------C-------------cCccC----HHHHHHHHhcCCCCeEEEeccCC-------HHH
Confidence 0 00011 11134556778999999999996 345
Q ss_pred HHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHH
Q 008534 335 VQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (562)
Q Consensus 335 ~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~ 384 (562)
.+.++.+...+.+++.++|..+ .....||+..|..|++...|.+.+.+
T Consensus 233 ~~~l~a~~~g~~~~i~T~Ha~~--~~~~~~Rl~~l~~~~~~~~g~~~~~~ 280 (308)
T TIGR02788 233 FDFIRAVNTGHPGSITTLHAGS--PEEAFEQLALMVKSSQAGLGLDFAYI 280 (308)
T ss_pred HHHHHHHhcCCCeEEEEEeCCC--HHHHHHHHHHHhhccccccCCCHHHH
Confidence 5666666532346799999976 45668999999999999989887765
|
The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA. |
| >PRK01156 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=5.2e-10 Score=132.22 Aligned_cols=77 Identities=23% Similarity=0.325 Sum_probs=66.5
Q ss_pred ccCCCChhHHHHHHH------HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-HC-C-cEEEEEecCCChHHHhc
Q 008534 292 FVRGVSGGERKRVCI------GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA-EA-G-KTVVTTIHQPSSRLFHK 362 (562)
Q Consensus 292 ~~~~LSGGqrqRv~I------AraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~-~~-g-~Tvii~tH~~~~~i~~~ 362 (562)
.+..||||||+|++| |++|+.+|++++|||||++||+.....+.+.|+... .. + .|||++||++. ....
T Consensus 798 ~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~--~~~~ 875 (895)
T PRK01156 798 GIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRE--LLSV 875 (895)
T ss_pred ccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchH--HHHh
Confidence 467899999999975 589999999999999999999999999999998654 33 3 48999999975 4578
Q ss_pred CCEEEEEc
Q 008534 363 FDKLILLG 370 (562)
Q Consensus 363 ~D~i~vL~ 370 (562)
||+++.+.
T Consensus 876 ~d~ii~~~ 883 (895)
T PRK01156 876 ADVAYEVK 883 (895)
T ss_pred cCeEEEEE
Confidence 99999997
|
|
| >cd01120 RecA-like_NTPases RecA-like NTPases | Back alignment and domain information |
|---|
Probab=99.03 E-value=1e-09 Score=101.20 Aligned_cols=62 Identities=21% Similarity=0.214 Sum_probs=46.4
Q ss_pred CChhHHHHHHHHHHHhhCCCEEEEeCCCC----------CCCHHHHHHHHHHHHHHHHCCcEEEEEecCCCh
Q 008534 296 VSGGERKRVCIGNEIIINPSLLFLDEPTS----------GLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSS 357 (562)
Q Consensus 296 LSGGqrqRv~IAraLl~~P~iLlLDEPTs----------gLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~ 357 (562)
.+.++.+++..+++...+|+++++|||++ +.|......+.+.+....+.+.|+|+++|....
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~~ 139 (165)
T cd01120 68 PAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQVPSG 139 (165)
T ss_pred CcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEecCCc
Confidence 45566677888899999999999999995 445454555555555544458999999998754
|
This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion. |
| >COG3910 Predicted ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.03 E-value=4.8e-09 Score=100.07 Aligned_cols=83 Identities=23% Similarity=0.448 Sum_probs=62.5
Q ss_pred cCcccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhc-CCEEE
Q 008534 289 GGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHK-FDKLI 367 (562)
Q Consensus 289 g~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~-~D~i~ 367 (562)
|+...+..|-||-=---+.+.+ .+.-|+|||||-++|.|.-+.+++..|+++++.|.-+||.||-|- +..+ --.|+
T Consensus 123 ~~~sLh~~SHGEsf~~i~~~rf-~~~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSPi--LlAiP~A~I~ 199 (233)
T COG3910 123 GGRSLHHMSHGESFLAIFHNRF-NGQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSPI--LLAIPGAEIY 199 (233)
T ss_pred CCcchhhhccchHHHHHHHHHh-ccCceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecChh--heeCCCcEEE
Confidence 3334456889986544444443 567899999999999999999999999999999999999999874 3332 24666
Q ss_pred EEcCCeE
Q 008534 368 LLGKGSL 374 (562)
Q Consensus 368 vL~~G~i 374 (562)
-++.+-+
T Consensus 200 ~~~~~g~ 206 (233)
T COG3910 200 EISESGI 206 (233)
T ss_pred EEecCCc
Confidence 6666543
|
|
| >TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
Probab=98.98 E-value=5.3e-10 Score=134.67 Aligned_cols=76 Identities=18% Similarity=0.287 Sum_probs=66.8
Q ss_pred ccCCCChhHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEE
Q 008534 292 FVRGVSGGERKRVCIGNEII----INPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLI 367 (562)
Q Consensus 292 ~~~~LSGGqrqRv~IAraLl----~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~ 367 (562)
.+..||||||+|++||++++ .+|+++||||||++||+.+...+.+.|+.+++ +.++|+|||++.. ...||+++
T Consensus 1086 ~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~-~~~~i~~sh~~~~--~~~~d~~~ 1162 (1179)
T TIGR02168 1086 NLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSK-NTQFIVITHNKGT--MEVADQLY 1162 (1179)
T ss_pred cccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhcc-CCEEEEEEcChhH--HHHhhhHe
Confidence 45789999999999999985 57799999999999999999999999999865 5789999999763 57899997
Q ss_pred EEc
Q 008534 368 LLG 370 (562)
Q Consensus 368 vL~ 370 (562)
.+.
T Consensus 1163 ~~~ 1165 (1179)
T TIGR02168 1163 GVT 1165 (1179)
T ss_pred eee
Confidence 654
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. |
| >PRK06793 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.8e-09 Score=116.54 Aligned_cols=170 Identities=17% Similarity=0.168 Sum_probs=115.2
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhcc
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~ 228 (562)
.++-++++..|. .+..+++++ +.+.+|+.++|+|+||+|||||+++|++... +..|.|.+.|
T Consensus 130 ~~~r~~i~~~l~-------TGiraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~--~~~gvI~~iG-------- 191 (432)
T PRK06793 130 AFEREEITDVFE-------TGIKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAK--ADINVISLVG-------- 191 (432)
T ss_pred chheechhhccC-------CCCEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCC--CCeEEEEeCC--------
Confidence 355566655441 235688885 9999999999999999999999999998542 3345544433
Q ss_pred CcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHH
Q 008534 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGN 308 (562)
Q Consensus 229 ~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAr 308 (562)
|.. .+|.|.+..-. ..-++... ..+ ....+-|.|+|+|++.+.
T Consensus 192 -------erg-----~ev~e~~~~~l---------------------~~~gl~~t--vvv--~~tsd~s~~~r~ra~~~a 234 (432)
T PRK06793 192 -------ERG-----REVKDFIRKEL---------------------GEEGMRKS--VVV--VATSDESHLMQLRAAKLA 234 (432)
T ss_pred -------CCc-----ccHHHHHHHHh---------------------hhccccee--EEE--EECCCCCHHHHHHHHHHH
Confidence 321 46666654211 11112110 111 123578999999999998
Q ss_pred HHh-------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecCh
Q 008534 309 EII-------INPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 380 (562)
Q Consensus 309 aLl-------~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~ 380 (562)
+.+ .++-+|++|+||...|+. .+|-..+.+....|.+..+.+|- . ++++|.-...+|.|...++.
T Consensus 235 ~~iAEyfr~~G~~VLlilDslTr~a~A~--reisl~~~e~p~~G~~~~~~s~l-~----~L~ERag~~~~GSiT~~~tv 306 (432)
T PRK06793 235 TSIAEYFRDQGNNVLLMMDSVTRFADAR--RSVDIAVKELPIGGKTLLMESYM-K----KLLERSGKTQKGSITGIYTV 306 (432)
T ss_pred HHHHHHHHHcCCcEEEEecchHHHHHHH--HHHHHHhcCCCCCCeeeeeeccc-h----hHHHHhccCCCcceEEEEEE
Confidence 888 689999999999999996 55555556555458888888883 3 34455555678988777754
|
|
| >cd01131 PilT Pilus retraction ATPase PilT | Back alignment and domain information |
|---|
Probab=98.95 E-value=3.9e-09 Score=103.06 Aligned_cols=57 Identities=23% Similarity=0.347 Sum_probs=42.7
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEc
Q 008534 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG 370 (562)
Q Consensus 305 ~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~ 370 (562)
+|+++|..+|+++++|||. |.++...++ +.+..|..++.++|..+. ...+||++.|.
T Consensus 66 ~i~~aLr~~pd~ii~gEir---d~e~~~~~l----~~a~~G~~v~~t~Ha~~~--~~~~~Rl~~l~ 122 (198)
T cd01131 66 ALKAALRQDPDVILVGEMR---DLETIRLAL----TAAETGHLVMSTLHTNSA--AKTIDRIIDVF 122 (198)
T ss_pred HHHHHhcCCcCEEEEcCCC---CHHHHHHHH----HHHHcCCEEEEEecCCcH--HHHHhHHHhhc
Confidence 4778899999999999996 665543333 345569999999999763 46678887663
|
PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility. |
| >PRK06067 flagellar accessory protein FlaH; Validated | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.4e-08 Score=101.29 Aligned_cols=163 Identities=19% Similarity=0.213 Sum_probs=96.6
Q ss_pred ceeece-EEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHHH
Q 008534 171 DILNGI-TGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKET 249 (562)
Q Consensus 171 ~iL~~v-s~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~~~igyV~Q~~~l~~~lTV~en 249 (562)
+-|+.+ .+=+++|.++.|.|++|+|||||...++-... . .| ..+.|+..+. +..+.
T Consensus 12 ~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~--~-~g--------------~~~~y~~~e~------~~~~~ 68 (234)
T PRK06067 12 EELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGAL--K-QG--------------KKVYVITTEN------TSKSY 68 (234)
T ss_pred HHHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHH--h-CC--------------CEEEEEEcCC------CHHHH
Confidence 445554 45699999999999999999999988752111 1 11 1244555432 23332
Q ss_pred HHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhh--CCCEEEEeCCCCC--
Q 008534 250 LTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIII--NPSLLFLDEPTSG-- 325 (562)
Q Consensus 250 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~--~P~iLlLDEPTsg-- 325 (562)
+.-...... .. .+.+. .+.-...+..+. .....+.++++.+.+...++. +|+++++||||+.
T Consensus 69 ~~~~~~~g~--~~---------~~~~~-~g~l~i~~~~~~--~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~ 134 (234)
T PRK06067 69 LKQMESVKI--DI---------SDFFL-WGYLRIFPLNTE--GFEWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFAT 134 (234)
T ss_pred HHHHHHCCC--Ch---------hHHHh-CCCceEEecccc--ccccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHh
Confidence 221111110 00 01110 011011111000 112356788999999999997 9999999999964
Q ss_pred -CCHHHHHHHHHHHHHHHHCCcEEEEEecCCCh------HHHhcCCEEEEEc
Q 008534 326 -LDSTTALRIVQMLQDIAEAGKTVVTTIHQPSS------RLFHKFDKLILLG 370 (562)
Q Consensus 326 -LD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~------~i~~~~D~i~vL~ 370 (562)
+|......+++.++.+++.|.|+++++|+... .+..++|-++.|+
T Consensus 135 ~~~~~~~~~~l~~l~~l~~~g~tvllt~~~~~~~~~~~~~~~~l~DgvI~L~ 186 (234)
T PRK06067 135 YAEEDDILNFLTEAKNLVDLGKTILITLHPYAFSEELLSRIRSICDVYLKLR 186 (234)
T ss_pred cCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcCCHHHHHHHHhheEEEEEEE
Confidence 45555556666677767778999999998643 1344567676665
|
|
| >PRK02224 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=4.2e-09 Score=124.29 Aligned_cols=78 Identities=31% Similarity=0.430 Sum_probs=67.2
Q ss_pred cCCCChhHHH------HHHHHHHHhhC-----C-CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCc-EEEEEecCCChHH
Q 008534 293 VRGVSGGERK------RVCIGNEIIIN-----P-SLLFLDEPTSGLDSTTALRIVQMLQDIAEAGK-TVVTTIHQPSSRL 359 (562)
Q Consensus 293 ~~~LSGGqrq------Rv~IAraLl~~-----P-~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~-Tvii~tH~~~~~i 359 (562)
+..||||||+ |++||++++.+ | +++||||||++||+.....+.+.|+.+...|. +||++||++..
T Consensus 779 ~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~~~~qviiish~~~~-- 856 (880)
T PRK02224 779 PEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHDDEL-- 856 (880)
T ss_pred hhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhcCCCeEEEEECChHH--
Confidence 4689999999 99999999864 3 67999999999999999999999999876564 89999999753
Q ss_pred HhcCCEEEEEcCC
Q 008534 360 FHKFDKLILLGKG 372 (562)
Q Consensus 360 ~~~~D~i~vL~~G 372 (562)
...||++++|...
T Consensus 857 ~~~ad~~~~~~~~ 869 (880)
T PRK02224 857 VGAADDLVRVEKD 869 (880)
T ss_pred HHhcCeeEEeecC
Confidence 4679999999643
|
|
| >TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
Probab=98.86 E-value=3.3e-09 Score=128.06 Aligned_cols=77 Identities=17% Similarity=0.242 Sum_probs=68.0
Q ss_pred ccCCCChhHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEE
Q 008534 292 FVRGVSGGERKRVCIGNEIII----NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLI 367 (562)
Q Consensus 292 ~~~~LSGGqrqRv~IAraLl~----~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~ 367 (562)
.+..||||||++++||++|+. +|+++|||||+++||+.....+.+.|+++.. +..+|++||++. ++..||+++
T Consensus 1071 ~~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~-~~~~i~~t~~~~--~~~~~d~~~ 1147 (1164)
T TIGR02169 1071 RLEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAG-EAQFIVVSLRSP--MIEYADRAI 1147 (1164)
T ss_pred cchhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcC-CCeEEEEECcHH--HHHhcceeE
Confidence 356899999999999999985 7899999999999999999999999999865 578999999964 568999998
Q ss_pred EEcC
Q 008534 368 LLGK 371 (562)
Q Consensus 368 vL~~ 371 (562)
.+..
T Consensus 1148 ~~~~ 1151 (1164)
T TIGR02169 1148 GVTM 1151 (1164)
T ss_pred eEEE
Confidence 7753
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. |
| >PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=98.84 E-value=1e-08 Score=112.23 Aligned_cols=151 Identities=23% Similarity=0.299 Sum_probs=92.7
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHHHH
Q 008534 171 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETL 250 (562)
Q Consensus 171 ~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~~~igyV~Q~~~l~~~lTV~enl 250 (562)
.++++.+..++.|.+++++||||+||||++..|++++. ...|. ++|++|.+|. | ..++.|+|
T Consensus 244 ~~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~--~~~G~-------------~kV~LI~~Dt--~-RigA~EQL 305 (484)
T PRK06995 244 PVLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCV--MRHGA-------------SKVALLTTDS--Y-RIGGHEQL 305 (484)
T ss_pred hhccCccccccCCcEEEEECCCCccHHHHHHHHHHHHH--HhcCC-------------CeEEEEeCCc--c-chhHHHHH
Confidence 35667777888999999999999999999999998542 12231 2588999886 3 47899999
Q ss_pred HHHHhhC-CCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHH-HHHHHHHHhhCC-----CEEEEeCCC
Q 008534 251 TYAALLR-LPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK-RVCIGNEIIINP-----SLLFLDEPT 323 (562)
Q Consensus 251 ~~~~~~~-~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrq-Rv~IAraLl~~P-----~iLlLDEPT 323 (562)
.+.+... .+.. ......+......++.+....+| .+...+++. .+.-..+++.++ .+|+||.++
T Consensus 306 r~~AeilGVpv~----~~~~~~Dl~~aL~~L~d~d~VLI-----DTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~ 376 (484)
T PRK06995 306 RIYGKILGVPVH----AVKDAADLRLALSELRNKHIVLI-----DTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATS 376 (484)
T ss_pred HHHHHHhCCCee----ccCCchhHHHHHHhccCCCeEEe-----CCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCC
Confidence 9866543 2211 11111222334455655433333 333223322 234444555554 689999998
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCcEEEEEecC
Q 008534 324 SGLDSTTALRIVQMLQDIAEAGKTVVTTIHQ 354 (562)
Q Consensus 324 sgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~ 354 (562)
.+ ..+.+.++.+...+.+-+|.|+-
T Consensus 377 ~~------~~l~~i~~~f~~~~~~g~IlTKl 401 (484)
T PRK06995 377 HG------DTLNEVVQAYRGPGLAGCILTKL 401 (484)
T ss_pred cH------HHHHHHHHHhccCCCCEEEEeCC
Confidence 87 33444555554456665666663
|
|
| >cd01125 repA Hexameric Replicative Helicase RepA | Back alignment and domain information |
|---|
Probab=98.81 E-value=3e-08 Score=99.47 Aligned_cols=136 Identities=21% Similarity=0.387 Sum_probs=83.8
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECC-EeCChhccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCC
Q 008534 183 GEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYND-HPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNT 261 (562)
Q Consensus 183 Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G-~~~~~~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~ 261 (562)
|++..|+||+|+|||||+-.++-... .|.=++++ ... .-...+-|+.=++
T Consensus 1 g~~~ll~g~~G~GKS~lal~la~~va----~G~~~~g~~~~~--~~~~~Vlyi~~Ed----------------------- 51 (239)
T cd01125 1 GYVSALVAPGGTGKSSLLLVLALAMA----LGKNLFGGGLKV--TEPGRVVYLSAED----------------------- 51 (239)
T ss_pred CceeEEEcCCCCCHHHHHHHHHHHHh----cCccccCCcccc--CCCceEEEEECCC-----------------------
Confidence 67899999999999999988873221 23211111 111 1123355554322
Q ss_pred ccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHH----------------HHhhCCCEEEEeCCCCC
Q 008534 262 LTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGN----------------EIIINPSLLFLDEPTSG 325 (562)
Q Consensus 262 ~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAr----------------aLl~~P~iLlLDEPTsg 325 (562)
+..+...++..+...+++.+..+..+ +.+|+.|++.+++ ....+|+++++| |++.
T Consensus 52 -~~~~i~~Rl~~i~~~~~~~~~~~rl~-------~~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lvviD-pl~~ 122 (239)
T cd01125 52 -PREEIHRRLEAILQHLEPDDAGDRLF-------IDSGRIQPISIAREGRIIVVPEFERIIEQLLIRRIDLVVID-PLVS 122 (239)
T ss_pred -CHHHHHHHHHHHHhhcCCcCcccceE-------EeccCCCceecccCCcccccHHHHHHHHHHHhcCCCEEEEC-ChHH
Confidence 12223334555555555433322221 2245556655543 335799999999 7754
Q ss_pred ------CCHHHHHHHHHHHHHHHHC-CcEEEEEecCCC
Q 008534 326 ------LDSTTALRIVQMLQDIAEA-GKTVVTTIHQPS 356 (562)
Q Consensus 326 ------LD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~ 356 (562)
+|+.....+++.|++++++ |.|||+++|..-
T Consensus 123 ~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~K 160 (239)
T cd01125 123 FHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVRK 160 (239)
T ss_pred hCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccCc
Confidence 7999999999999998764 899999999853
|
RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent. |
| >TIGR03238 dnd_assoc_3 dnd system-associated protein 3 | Back alignment and domain information |
|---|
Probab=98.79 E-value=4.3e-09 Score=113.82 Aligned_cols=52 Identities=21% Similarity=0.285 Sum_probs=44.8
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCC
Q 008534 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS 224 (562)
Q Consensus 170 ~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~ 224 (562)
..+|++||+++++||+++|+|||||||||||+ +|.. .|+.+|+|.++|.++.
T Consensus 19 ~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~-~~~sGg~I~ldg~~~~ 70 (504)
T TIGR03238 19 ERILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKR-KFSEGYEFFLDATHSF 70 (504)
T ss_pred HHHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCC-CCCCCCEEEECCEECC
Confidence 46899999999999999999999999999999 5543 3554558999999875
|
cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A. |
| >smart00382 AAA ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Probab=98.78 E-value=2.3e-07 Score=81.96 Aligned_cols=59 Identities=31% Similarity=0.329 Sum_probs=45.6
Q ss_pred CCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH------HHHHHHHCCcEEEEEec
Q 008534 295 GVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQ------MLQDIAEAGKTVVTTIH 353 (562)
Q Consensus 295 ~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~------~L~~l~~~g~Tvii~tH 353 (562)
...+++..+..++++-..+|.++++||+..-.+......... ........+..+|+++|
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 124 (148)
T smart00382 60 SGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTN 124 (148)
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhHHHHHHHhcCCCEEEEEeC
Confidence 477888888888888888899999999999999988776654 12222334678888888
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. |
| >TIGR01420 pilT_fam pilus retraction protein PilT | Back alignment and domain information |
|---|
Probab=98.65 E-value=1e-07 Score=100.82 Aligned_cols=56 Identities=21% Similarity=0.355 Sum_probs=42.2
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEE
Q 008534 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL 369 (562)
Q Consensus 305 ~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL 369 (562)
+|+++|-.+|+++++||+. |+.+....++ .+..|.+|+.++|-.+. ....+|++-|
T Consensus 187 ~l~~~lr~~pd~i~vgEir---d~~~~~~~l~----aa~tGh~v~~T~Ha~~~--~~~~~Rl~~~ 242 (343)
T TIGR01420 187 ALRAALREDPDVILIGEMR---DLETVELALT----AAETGHLVFGTLHTNSA--AQTIERIIDV 242 (343)
T ss_pred HHHHhhccCCCEEEEeCCC---CHHHHHHHHH----HHHcCCcEEEEEcCCCH--HHHHHHHHHh
Confidence 4667888999999999997 8888765444 34569999999998653 4556777554
|
This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation. |
| >PRK13891 conjugal transfer protein TrbE; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=3.4e-07 Score=107.62 Aligned_cols=69 Identities=17% Similarity=0.195 Sum_probs=54.5
Q ss_pred HHHHHhhCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHh--cCCEEEEEcCCeEE
Q 008534 306 IGNEIIINPSLLFLDEPTSGL-DSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFH--KFDKLILLGKGSLL 375 (562)
Q Consensus 306 IAraLl~~P~iLlLDEPTsgL-D~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~--~~D~i~vL~~G~iv 375 (562)
|++++..+|.++++|||+.+| |+..+..+.+.++.+.+.|.+++++||++.. +.. .++.|+-....+|.
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK~g~~vil~TQs~~d-~~~s~i~~~ilen~~t~I~ 751 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRKANCLVLMATQSLSD-AANSGILDVIVESTATKIF 751 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HhhCchHHHHHHcCCccee
Confidence 677888999999999999999 7999999999999998889999999999865 333 23434334444444
|
|
| >TIGR00611 recf recF protein | Back alignment and domain information |
|---|
Probab=98.59 E-value=7.8e-08 Score=102.58 Aligned_cols=59 Identities=22% Similarity=0.303 Sum_probs=54.6
Q ss_pred CCChhHHHHHHHHHHHhh---------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCC
Q 008534 295 GVSGGERKRVCIGNEIII---------NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPS 356 (562)
Q Consensus 295 ~LSGGqrqRv~IAraLl~---------~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~ 356 (562)
.+|.||+|++.||.+|+. +|+|||||||+++||+..+..+++.|.+. |..|++++|++.
T Consensus 275 ~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~---~~qv~it~~~~~ 342 (365)
T TIGR00611 275 FASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL---GVQVFVTAISLD 342 (365)
T ss_pred hcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc---CCEEEEEecChh
Confidence 599999999999999999 99999999999999999999999999753 679999999864
|
All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >TIGR01026 fliI_yscN ATPase FliI/YscN family | Back alignment and domain information |
|---|
Probab=98.58 E-value=2.3e-07 Score=101.01 Aligned_cols=176 Identities=19% Similarity=0.209 Sum_probs=106.5
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCC---h---------hccCcEEEEcc
Q 008534 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---K---------SLKSKIGFVTQ 236 (562)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~---~---------~~~~~igyV~Q 236 (562)
+..+++++ +.+.+|+.++|+|+||+|||||+++|++.. . +..|.+...|..-. . .+++.+.++.+
T Consensus 150 Gi~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~-~-~~~~vi~~iG~r~~ev~~~~~~~~~~~~l~~tvvv~~~ 226 (440)
T TIGR01026 150 GVRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNT-E-ADVNVIALIGERGREVREFIEHDLGEEGLKRSVVVVAT 226 (440)
T ss_pred eeeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCC-C-CCEEEEEEEeecchHHHHHHHHHhcccccceEEEEEEC
Confidence 45799999 999999999999999999999999999854 3 34566666555332 1 12233344444
Q ss_pred CCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCE
Q 008534 237 DDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSL 316 (562)
Q Consensus 237 ~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~i 316 (562)
.+. +..+-..-+. .--.+.+.+...|- |-++- ..+|+- .|+|+=- ==
T Consensus 227 ~d~-----~p~~r~~~~~------------~a~t~AE~frd~G~----~Vll~---~DslTr-------~A~A~RE--is 273 (440)
T TIGR01026 227 SDQ-----SPLLRLKGAY------------VATAIAEYFRDQGK----DVLLL---MDSVTR-------FAMAQRE--IG 273 (440)
T ss_pred CCC-----CHHHHHHHHH------------HHHHHHHHHHHCCC----CEEEE---EeChHH-------HHHHHHH--HH
Confidence 321 2211111000 00011122222221 22111 112221 1111100 00
Q ss_pred EEEeCC--CCCCCHHHHHHHHHHHHHHHHCCc-------EEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHH
Q 008534 317 LFLDEP--TSGLDSTTALRIVQMLQDIAEAGK-------TVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (562)
Q Consensus 317 LlLDEP--TsgLD~~~~~~i~~~L~~l~~~g~-------Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el 383 (562)
+.+.|| +.|+||.....+-+.+.+....+. ||++.+||..+ -.+|++..+.+|+|+..+...+.
T Consensus 274 l~~ge~P~~~Gypp~~~~~l~~l~ERag~~~~GSIT~i~tVl~~~~d~~d---pi~d~~~~i~dG~ivLsr~la~~ 346 (440)
T TIGR01026 274 LAAGEPPATKGYTPSVFSTLPRLLERAGASGKGSITAFYTVLVEGDDMNE---PIADSVRGILDGHIVLSRALAQR 346 (440)
T ss_pred HhcCCCCcccccChhHHHHHHHHHHHhccCCCCeeeEEEEEEccCcCCCc---chhhhhccccceEEEEecchhhC
Confidence 335675 459999999999999998876566 88888999754 46899999999999999887664
|
This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins. |
| >TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family | Back alignment and domain information |
|---|
Probab=98.56 E-value=2.1e-08 Score=99.51 Aligned_cols=50 Identities=20% Similarity=0.286 Sum_probs=33.8
Q ss_pred ceeece-EEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCE
Q 008534 171 DILNGI-TGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDH 221 (562)
Q Consensus 171 ~iL~~v-s~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~ 221 (562)
+-|+.+ .+=+++|++++|.||+|+|||||...++.....+. .+.+++...
T Consensus 7 ~~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g-~~~~~is~e 57 (229)
T TIGR03881 7 EGLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDG-DPVIYVTTE 57 (229)
T ss_pred hhHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHHHHHHhcC-CeEEEEEcc
Confidence 345553 45799999999999999999999886552111111 344566553
|
Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain. |
| >PRK07196 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.56 E-value=6.9e-08 Score=104.43 Aligned_cols=86 Identities=22% Similarity=0.286 Sum_probs=66.7
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCC--ccEEEECCEeCCh----------hccCcEEEEcc
Q 008534 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTV--GGSITYNDHPYSK----------SLKSKIGFVTQ 236 (562)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~--~G~I~i~G~~~~~----------~~~~~igyV~Q 236 (562)
+..+|+++ ++|.+|++++|+|+||+|||||+++|+|.. .+.. -|.|-.+|.++.. ..+..+++++|
T Consensus 142 Gi~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~-~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~ 219 (434)
T PRK07196 142 GVNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYT-QADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPA 219 (434)
T ss_pred ceeeccce-EeEecceEEEEECCCCCCccHHHHHHhccc-CCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecC
Confidence 46799999 999999999999999999999999999854 3321 1444445544421 12446899999
Q ss_pred CCCCCCCCCHHHHHHHHHhh
Q 008534 237 DDVLFPHLTVKETLTYAALL 256 (562)
Q Consensus 237 ~~~l~~~lTV~enl~~~~~~ 256 (562)
+...+..+++.+++.+.+..
T Consensus 220 d~s~~~rl~a~e~a~~iAEy 239 (434)
T PRK07196 220 DESPLMRIKATELCHAIATY 239 (434)
T ss_pred CCChhhhHHHHHHHHHHHHH
Confidence 99999899999999876643
|
|
| >cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.9e-07 Score=90.24 Aligned_cols=84 Identities=25% Similarity=0.176 Sum_probs=61.5
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCC-hhccCcEEEEccCC--CCCCCCCHHH
Q 008534 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS-KSLKSKIGFVTQDD--VLFPHLTVKE 248 (562)
Q Consensus 172 iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~-~~~~~~igyV~Q~~--~l~~~lTV~e 248 (562)
..+=+.+.+++|+.++|+||||||||||+++|+|.+. +..|.|.+.+..-. ...+..++++.|.+ ..++..++.+
T Consensus 14 ~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~--~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (186)
T cd01130 14 QAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIP--PDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMAD 91 (186)
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcC--CCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHH
Confidence 4555667789999999999999999999999998653 45799999774321 12234566666554 3466789999
Q ss_pred HHHHHHhhC
Q 008534 249 TLTYAALLR 257 (562)
Q Consensus 249 nl~~~~~~~ 257 (562)
.+..+.+..
T Consensus 92 ~l~~~lR~~ 100 (186)
T cd01130 92 LLRSALRMR 100 (186)
T ss_pred HHHHHhccC
Confidence 988776543
|
The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase. |
| >TIGR02655 circ_KaiC circadian clock protein KaiC | Back alignment and domain information |
|---|
Probab=98.55 E-value=5.4e-09 Score=115.45 Aligned_cols=167 Identities=17% Similarity=0.201 Sum_probs=98.6
Q ss_pred ceeece-EEEEeCCeEEEEECCCCCcHHHHHHHHH--cCCCCCCCccEEEECCEeCChhc---cCcEEEEccCCCCCCCC
Q 008534 171 DILNGI-TGSVNPGEVLALMGPSGSGKTTLLNLLS--GRLMEPTVGGSITYNDHPYSKSL---KSKIGFVTQDDVLFPHL 244 (562)
Q Consensus 171 ~iL~~v-s~~i~~Ge~~alvGpsGsGKSTLl~~L~--G~l~~~~~~G~I~i~G~~~~~~~---~~~igyV~Q~~~l~~~l 244 (562)
+-|+.+ .+=+++|..+.|.||+|||||||..-++ |. .... ...+++....-...+ .+.+|+-.++..--
T Consensus 8 ~gLD~il~GGlp~g~~~Li~G~pGsGKT~la~qfl~~g~-~~~g-e~~lyvs~eE~~~~l~~~~~~~G~~~~~~~~~--- 82 (484)
T TIGR02655 8 EGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGI-IHFD-EPGVFVTFEESPQDIIKNARSFGWDLQKLVDE--- 82 (484)
T ss_pred hhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHH-HhCC-CCEEEEEEecCHHHHHHHHHHcCCCHHHHhhc---
Confidence 346665 5578999999999999999999998663 31 1111 234555444322222 12345444321100
Q ss_pred CHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHH--HHHhhCCCEEEEeCC
Q 008534 245 TVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG--NEIIINPSLLFLDEP 322 (562)
Q Consensus 245 TV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA--raLl~~P~iLlLDEP 322 (562)
+++.+- . .... .....+++.+++.+..+.. ...+|+|++|||.|+ .+|...|+.+
T Consensus 83 ---g~l~~~-----~--~~~~---~~~~~~~~~~~l~~~l~~i-----~~~ls~g~~qRVvIDSl~aL~~~~~~~----- 139 (484)
T TIGR02655 83 ---GKLFIL-----D--ASPD---PEGQDVVGGFDLSALIERI-----NYAIRKYKAKRVSIDSVTAVFQQYDAV----- 139 (484)
T ss_pred ---CceEEE-----e--cCch---hccccccccCCHHHHHHHH-----HHHHHHhCCcEEEEeehhHhhhhcCch-----
Confidence 000000 0 0000 0001122334444333332 357999999999999 6666665543
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChH-------H-HhcCCEEEEEc
Q 008534 323 TSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSR-------L-FHKFDKLILLG 370 (562)
Q Consensus 323 TsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~-------i-~~~~D~i~vL~ 370 (562)
...+..+.+.++.+++.|.|+|+++|++... + ..+||.|++|+
T Consensus 140 -----~~~r~~l~~Li~~L~~~g~TvLLtsh~~~~~~~~~~~~~~e~laDgVI~L~ 190 (484)
T TIGR02655 140 -----SVVRREIFRLVARLKQIGVTTVMTTERIEEYGPIARYGVEEFVSDNVVILR 190 (484)
T ss_pred -----HHHHHHHHHHHHHHHHCCCEEEEEecCcccccccccCCceeEeeeeEEEEE
Confidence 4677888999998888899999999986420 1 34789999986
|
Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. |
| >COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.54 E-value=2.5e-07 Score=109.75 Aligned_cols=79 Identities=27% Similarity=0.418 Sum_probs=69.6
Q ss_pred ccCCCChhHHHHHHHHHHHh------hC--CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcC
Q 008534 292 FVRGVSGGERKRVCIGNEII------IN--PSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKF 363 (562)
Q Consensus 292 ~~~~LSGGqrqRv~IAraLl------~~--P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~ 363 (562)
.+..|||||+=.++||.+|+ .+ -++|||||||..||+.....++++|..+...+.+|+||||+. ++...+
T Consensus 812 ~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~~~qiiIISH~e--el~e~~ 889 (908)
T COG0419 812 PIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDGRQIIIISHVE--ELKERA 889 (908)
T ss_pred ccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeChH--HHHHhC
Confidence 56789999999988887776 35 699999999999999999999999999988899999999995 466789
Q ss_pred CEEEEEcCC
Q 008534 364 DKLILLGKG 372 (562)
Q Consensus 364 D~i~vL~~G 372 (562)
|.++.++..
T Consensus 890 ~~~i~V~k~ 898 (908)
T COG0419 890 DVRIRVKKD 898 (908)
T ss_pred CeEEEEEec
Confidence 999988753
|
|
| >PRK14079 recF recombination protein F; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.7e-07 Score=99.53 Aligned_cols=75 Identities=16% Similarity=0.216 Sum_probs=62.1
Q ss_pred CCChhHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCE
Q 008534 295 GVSGGERKRVCIGNEII---------INPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDK 365 (562)
Q Consensus 295 ~LSGGqrqRv~IAraLl---------~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~ 365 (562)
-+|+||+|++.||..|+ .+|++++||||+++||+..+..+.+.|... ..++|.+++.+ ..+|+
T Consensus 263 ~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~---~q~~it~t~~~-----~~~~~ 334 (349)
T PRK14079 263 YASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASL---PQAIVAGTEAP-----PGAAL 334 (349)
T ss_pred hCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcC---CcEEEEcCCCC-----CCCce
Confidence 48999999999999998 899999999999999999999999888643 23555555432 56999
Q ss_pred EEEEcCCeEEEe
Q 008534 366 LILLGKGSLLYF 377 (562)
Q Consensus 366 i~vL~~G~iv~~ 377 (562)
++.+.+|++.-.
T Consensus 335 ~~~~~~~~~~~~ 346 (349)
T PRK14079 335 TLRIEAGVFTPE 346 (349)
T ss_pred EEEEeccEecCC
Confidence 999999887543
|
|
| >cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2 | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.9e-07 Score=90.75 Aligned_cols=112 Identities=18% Similarity=0.224 Sum_probs=64.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHHHHHHHHh-hCCCCCcc
Q 008534 185 VLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAAL-LRLPNTLT 263 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~~~igyV~Q~~~l~~~lTV~enl~~~~~-~~~~~~~~ 263 (562)
+++|.||||||||||.++|++.+. +|. +.++++|+... .++..+....... ...+...
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~----~~~---------------~~v~~~D~~~~-~~~~~~~~~~~~~~~~~~~~~- 59 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLG----NPK---------------VVIISQDSYYK-DLSHEELEERKNNNYDHPDAF- 59 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC----CCC---------------eEEEEeccccc-ccccccHHHhccCCCCCCCcc-
Confidence 589999999999999999998541 222 33444444332 2233332222111 0111111
Q ss_pred HHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 008534 264 KQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDS 328 (562)
Q Consensus 264 ~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~ 328 (562)
..+...+.+..+...+..+. +....|.|++++..+ .+.+|+++|+|+|+.+.++
T Consensus 60 ---~~~~~~~~l~~l~~~~~~~~-----p~~d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~ 113 (198)
T cd02023 60 ---DFDLLISHLQDLKNGKSVEI-----PVYDFKTHSRLKETV---TVYPADVIILEGILALYDK 113 (198)
T ss_pred ---cHHHHHHHHHHHHCCCCEec-----cccccccCcccCCce---ecCCCCEEEEechhhccch
Confidence 11233445555544332222 234678888776555 5688999999999999986
|
7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine. |
| >PRK06002 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.41 E-value=6.8e-07 Score=96.99 Aligned_cols=83 Identities=20% Similarity=0.254 Sum_probs=64.1
Q ss_pred ceeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECC---EeC
Q 008534 147 PIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYND---HPY 223 (562)
Q Consensus 147 ~~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G---~~~ 223 (562)
+..++.++++..|. .+..+++.++ .|.+|+.++|+||||||||||+++|++.. . +..|.|.+.| .++
T Consensus 137 p~~~~r~~v~~~l~-------TGi~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~-~-pd~gvv~liGergrev 206 (450)
T PRK06002 137 PPAMTRARVETGLR-------TGVRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARAD-A-FDTVVIALVGERGREV 206 (450)
T ss_pred CCCeEeecceEEcC-------CCcEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCC-C-CCeeeeeecccCCccH
Confidence 34689999988772 2467899996 99999999999999999999999999743 3 4568888854 444
Q ss_pred Ch--------hccCcEEEEccCCC
Q 008534 224 SK--------SLKSKIGFVTQDDV 239 (562)
Q Consensus 224 ~~--------~~~~~igyV~Q~~~ 239 (562)
.. ..++.|+||+|.+.
T Consensus 207 ~e~~~~~l~~~r~rtI~vV~qsd~ 230 (450)
T PRK06002 207 REFLEDTLADNLKKAVAVVATSDE 230 (450)
T ss_pred HHHhHHHHHHhhCCeEEEEEcCCC
Confidence 31 12357999999764
|
|
| >PRK05399 DNA mismatch repair protein MutS; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=6.5e-07 Score=105.15 Aligned_cols=139 Identities=19% Similarity=0.220 Sum_probs=87.4
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHH
Q 008534 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKE 248 (562)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~~~igyV~Q~~~l~~~lTV~e 248 (562)
...|-+|+++. ..+.++.|.|||.+||||+||.++-...- ..-| +|||-+..-+ .+.+
T Consensus 594 ~~~vpnd~~l~-~~~~~~iiTGpN~~GKSt~lr~v~l~~il-Aq~G-----------------~~VPa~~a~i---~~~d 651 (854)
T PRK05399 594 EPFVPNDCDLD-EERRLLLITGPNMAGKSTYMRQVALIVLL-AQIG-----------------SFVPAESARI---GIVD 651 (854)
T ss_pred CceEecceeeC-CCCcEEEEECCCCCCcHHHHHHHHHHHHH-HhcC-----------------CceeccceEe---cccC
Confidence 34577888888 67889999999999999999998732110 0011 2344322111 1111
Q ss_pred HHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhh--CCCEEEEeCC---C
Q 008534 249 TLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIII--NPSLLFLDEP---T 323 (562)
Q Consensus 249 nl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~--~P~iLlLDEP---T 323 (562)
.| +.++|-.+ . ...++|-=+.....++.+|-. +++++||||| |
T Consensus 652 ~I------------------------~triga~d---~-----i~~g~STF~~E~~~~~~il~~at~~sLvllDE~GrGT 699 (854)
T PRK05399 652 RI------------------------FTRIGASD---D-----LASGRSTFMVEMTETANILNNATERSLVLLDEIGRGT 699 (854)
T ss_pred ee------------------------eeccCccc---c-----cccCcccHHHHHHHHHHHHHhCCCCcEEEEecCCCCC
Confidence 11 11122111 1 124577777777777777665 8999999999 8
Q ss_pred CCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCE
Q 008534 324 SGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDK 365 (562)
Q Consensus 324 sgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~ 365 (562)
+.+|..+ .....++.+.+. +.++|++||.. ++..++++
T Consensus 700 s~~dg~a--ia~aile~l~~~~~~~~l~aTH~~--el~~l~~~ 738 (854)
T PRK05399 700 STYDGLS--IAWAVAEYLHDKIGAKTLFATHYH--ELTELEEK 738 (854)
T ss_pred CcchhHH--HHHHHHHHHHhcCCceEEEEechH--HHHHHhhh
Confidence 8899544 445566666655 58999999993 36666664
|
|
| >TIGR02680 conserved hypothetical protein TIGR02680 | Back alignment and domain information |
|---|
Probab=98.37 E-value=5.1e-07 Score=110.73 Aligned_cols=60 Identities=25% Similarity=0.388 Sum_probs=53.2
Q ss_pred cCCCChhHHHHHH----HHHH--------HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCC
Q 008534 293 VRGVSGGERKRVC----IGNE--------IIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQP 355 (562)
Q Consensus 293 ~~~LSGGqrqRv~----IAra--------Ll~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~ 355 (562)
..+||||||||++ +|++ +..+|++++|||||+|||+.+...+++.+.++ +.++||+||.+
T Consensus 1245 ~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l---~~~~i~~s~~~ 1316 (1353)
T TIGR02680 1245 FGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL---DLDFVMTSERE 1316 (1353)
T ss_pred ccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh---CCCEEEEccch
Confidence 5789999999996 5755 45799999999999999999999999999887 78999999873
|
Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length. |
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.6e-06 Score=105.48 Aligned_cols=164 Identities=16% Similarity=0.241 Sum_probs=90.1
Q ss_pred eceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHHHHHHH
Q 008534 174 NGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYA 253 (562)
Q Consensus 174 ~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~~~igyV~Q~~~l~~~lTV~enl~~~ 253 (562)
.=+++..+.+++++|+|++|+|||||++.+.+++.. ...|.+++++..+.... . .+-.+++..+ +....
T Consensus 198 ~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~-~F~g~vfv~~~~v~~~~-~--~~~~~~~~~~-------~~~~~ 266 (1153)
T PLN03210 198 SLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSR-QFQSSVFIDRAFISKSM-E--IYSSANPDDY-------NMKLH 266 (1153)
T ss_pred HHHccccCceEEEEEEcCCCCchHHHHHHHHHHHhh-cCCeEEEeeccccccch-h--hccccccccc-------chhHH
Confidence 345677889999999999999999999999876643 34688988763221110 0 0001111000 11100
Q ss_pred HhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q 008534 254 ALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALR 333 (562)
Q Consensus 254 ~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~ 333 (562)
.....+.+++...++. +.. .++.|+| |..++-+|+||+- |.. .
T Consensus 267 ------------l~~~~l~~il~~~~~~-----------~~~-~~~~~~~------L~~krvLLVLDdv----~~~---~ 309 (1153)
T PLN03210 267 ------------LQRAFLSEILDKKDIK-----------IYH-LGAMEER------LKHRKVLIFIDDL----DDQ---D 309 (1153)
T ss_pred ------------HHHHHHHHHhCCCCcc-----------cCC-HHHHHHH------HhCCeEEEEEeCC----CCH---H
Confidence 0112233333333321 111 2555655 3355667888984 433 3
Q ss_pred HHHHHHHHH---HCCcEEEEEecCCChHHHh-cCCEEEEEcCCeEEEecChHHHHHHHHhcCC
Q 008534 334 IVQMLQDIA---EAGKTVVTTIHQPSSRLFH-KFDKLILLGKGSLLYFGKASEAMAYFSSIGC 392 (562)
Q Consensus 334 i~~~L~~l~---~~g~Tvii~tH~~~~~i~~-~~D~i~vL~~G~iv~~G~~~el~~~f~~~g~ 392 (562)
.++.|.... ..|.+||+|||+... +.. .+|+++.+. .=+.++..+.|....+
T Consensus 310 ~l~~L~~~~~~~~~GsrIIiTTrd~~v-l~~~~~~~~~~v~------~l~~~ea~~LF~~~Af 365 (1153)
T PLN03210 310 VLDALAGQTQWFGSGSRIIVITKDKHF-LRAHGIDHIYEVC------LPSNELALEMFCRSAF 365 (1153)
T ss_pred HHHHHHhhCccCCCCcEEEEEeCcHHH-HHhcCCCeEEEec------CCCHHHHHHHHHHHhc
Confidence 344554432 348899999999542 222 257766553 1245677777776544
|
syringae 6; Provisional |
| >PRK09825 idnK D-gluconate kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.31 E-value=4.1e-07 Score=87.33 Aligned_cols=66 Identities=23% Similarity=0.339 Sum_probs=47.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChh--cc-CcEEEEccCCCCCCCCCHHHHHHHH
Q 008534 182 PGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS--LK-SKIGFVTQDDVLFPHLTVKETLTYA 253 (562)
Q Consensus 182 ~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~--~~-~~igyV~Q~~~l~~~lTV~enl~~~ 253 (562)
+|++++|+|+||||||||+++|++.+. -+.++|.++... .+ ...|+.+|+...++..++..++.+.
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~------~~~i~gd~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~ 70 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFS------AKFIDGDDLHPAKNIDKMSQGIPLTDEDRLPWLERLNDASYS 70 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcC------CEEECCcccCCHhHHHHHhcCCCCCcccchHHHHHHHHHHHH
Confidence 699999999999999999999998542 157888776421 22 2356777775555556666666654
|
|
| >PRK13873 conjugal transfer ATPase TrbE; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=3.2e-05 Score=90.93 Aligned_cols=46 Identities=24% Similarity=0.264 Sum_probs=41.7
Q ss_pred hhCCCEEEEeCCCCCCC-HHHHHHHHHHHHHHHHCCcEEEEEecCCC
Q 008534 311 IINPSLLFLDEPTSGLD-STTALRIVQMLQDIAEAGKTVVTTIHQPS 356 (562)
Q Consensus 311 l~~P~iLlLDEPTsgLD-~~~~~~i~~~L~~l~~~g~Tvii~tH~~~ 356 (562)
-.+|.++++|||+.+|| +..+..+.+.++.+.+.|.+++++||++.
T Consensus 633 ~~~p~illlDE~~~~Ld~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~ 679 (811)
T PRK13873 633 DGRPTLLILDEAWLFLDDPVFAAQLREWLKTLRKKNVSVIFATQSLA 679 (811)
T ss_pred cCCCcEEEEcChhhhCCCHHHHHHHHHHHHHHHHcCCEEEEEECCHH
Confidence 35899999999999999 78889999999999888999999999975
|
|
| >PRK13898 type IV secretion system ATPase VirB4; Provisional | Back alignment and domain information |
|---|
Probab=98.22 E-value=6.4e-05 Score=88.25 Aligned_cols=48 Identities=21% Similarity=0.243 Sum_probs=43.2
Q ss_pred HhhCCCEEEEeCCCCCCC-HHHHHHHHHHHHHHHHCCcEEEEEecCCCh
Q 008534 310 IIINPSLLFLDEPTSGLD-STTALRIVQMLQDIAEAGKTVVTTIHQPSS 357 (562)
Q Consensus 310 Ll~~P~iLlLDEPTsgLD-~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~ 357 (562)
+..+|.++++|||...|| +..+..+.+.++.+.+.|..++++||.+..
T Consensus 639 ~~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~d 687 (800)
T PRK13898 639 LDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRKLNTFVIFATQSVED 687 (800)
T ss_pred hcCCCcEEEEeCChhhCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 446899999999999999 888999999999998889999999999754
|
|
| >cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases | Back alignment and domain information |
|---|
Probab=98.17 E-value=5.3e-05 Score=77.04 Aligned_cols=37 Identities=32% Similarity=0.450 Sum_probs=33.3
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHc
Q 008534 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSG 205 (562)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G 205 (562)
+.+.|+.+.+-+.+|+++.|.||+|+|||||+..++.
T Consensus 16 g~~~Ld~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~ 52 (271)
T cd01122 16 PFPVLNKLTKGLRKGELIILTAGTGVGKTTFLREYAL 52 (271)
T ss_pred CcceeeeeeEEEcCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 4467999988999999999999999999999988874
|
Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands. |
| >PRK06315 type III secretion system ATPase; Provisional | Back alignment and domain information |
|---|
Probab=98.13 E-value=5.9e-06 Score=89.80 Aligned_cols=110 Identities=17% Similarity=0.211 Sum_probs=69.7
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECC---EeCCh----hcc---CcEEEE----
Q 008534 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYND---HPYSK----SLK---SKIGFV---- 234 (562)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G---~~~~~----~~~---~~igyV---- 234 (562)
...+++++ +.+.+|+.++|+|+||+|||||+++|+|.... ...|.|.+.| .++.+ .++ .+.++|
T Consensus 151 Gi~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~-~~~~vi~liGerg~ev~~~~~~~l~~~g~~~svvvvat 228 (442)
T PRK06315 151 GVRCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEE-ADVNVIALIGERGREVREFIEGDLGEEGMKRSVIVVST 228 (442)
T ss_pred eEEEEecc-ccccCCcEEEEECCCCCCcchHHHHhhccccc-CCceEEEEECCCchHHHHHHHHHHHhcCCceEEEEEeC
Confidence 45689998 99999999999999999999999999985532 3346777755 44421 121 235555
Q ss_pred -ccCCC--CCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCC
Q 008534 235 -TQDDV--LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE 281 (562)
Q Consensus 235 -~Q~~~--l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~ 281 (562)
+|++. +.+.+ +...+.-..+.+....+...+...++.+++++++|.
T Consensus 229 s~q~p~~rlnp~~-va~~IAE~~r~~g~~Vl~~~Ds~tR~a~alreV~L~ 277 (442)
T PRK06315 229 SDQSSQLRLNAAY-VGTAIAEYFRDQGKTVVLMMDSVTRFARALREVGLA 277 (442)
T ss_pred CCCCHHHHhhHHH-HHHHHHHHHHHcCCCcchhhhHHHHHHHHHHHhCcC
Confidence 88763 33322 333333222222111123345667788888888884
|
|
| >TIGR00767 rho transcription termination factor Rho | Back alignment and domain information |
|---|
Probab=98.12 E-value=5.1e-06 Score=88.85 Aligned_cols=53 Identities=21% Similarity=0.300 Sum_probs=46.2
Q ss_pred eeEEEEeEEEEEeecccCCccccceee-----------ceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILN-----------GITGSVNPGEVLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~-----------~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l 207 (562)
..++|+||++.|+ .++.+|+ |+++.|.+|+.++|+||+|+|||||++.|+..+
T Consensus 129 ~ri~Fe~LTf~YP-------~er~~Le~~~~~~~~R~id~~~pig~Gq~~~IvG~~g~GKTtL~~~i~~~I 192 (415)
T TIGR00767 129 NRVLFENLTPLYP-------NERLRLETSTEDLSTRVLDLFAPIGKGQRGLIVAPPKAGKTVLLQKIAQAI 192 (415)
T ss_pred CCeEEEEeeecCC-------CccceeecCccccceeeeeeEEEeCCCCEEEEECCCCCChhHHHHHHHHhh
Confidence 3699999999983 2346886 999999999999999999999999999999643
|
Members of this family differ in the specificity of RNA binding. |
| >cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
|---|
Probab=98.11 E-value=2.6e-05 Score=69.52 Aligned_cols=54 Identities=19% Similarity=0.306 Sum_probs=38.9
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-----CCcEEEEEecCC
Q 008534 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-----AGKTVVTTIHQP 355 (562)
Q Consensus 301 rqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-----~g~Tvii~tH~~ 355 (562)
.+..........++.++++||.-.. ++.....+.+.+..... .+.++|++++..
T Consensus 72 ~~~~~~~~~~~~~~~~lilDe~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~ 130 (151)
T cd00009 72 LVRLLFELAEKAKPGVLFIDEIDSL-SRGAQNALLRVLETLNDLRIDRENVRVIGATNRP 130 (151)
T ss_pred hHhHHHHhhccCCCeEEEEeChhhh-hHHHHHHHHHHHHhcCceeccCCCeEEEEecCcc
Confidence 4444555566778999999998765 56666778888877643 467888888864
|
The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. |
| >PF09818 ABC_ATPase: Predicted ATPase of the ABC class; InterPro: IPR019195 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=98.09 E-value=9.2e-05 Score=79.58 Aligned_cols=159 Identities=19% Similarity=0.276 Sum_probs=100.1
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEccCC-CCCCCCCHHHHHHHHHhhC
Q 008534 179 SVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDD-VLFPHLTVKETLTYAALLR 257 (562)
Q Consensus 179 ~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~~~igyV~Q~~-~l~~~lTV~enl~~~~~~~ 257 (562)
-|++| +++|+|.+=-||||||++|.--.|+. .-| ||...--. ......+--++ .-...
T Consensus 241 GIp~G-vTlIvGGGyHGKSTLL~Ale~GVYnH-ipG----DGRE~VVT-~~~avkirAEDGR~V~~-------------- 299 (448)
T PF09818_consen 241 GIPKG-VTLIVGGGYHGKSTLLEALERGVYNH-IPG----DGREFVVT-DPDAVKIRAEDGRSVEG-------------- 299 (448)
T ss_pred eeCCc-EEEEECCCCccHHHHHHHHHhcccCC-CCC----CCceEEEE-CCCceEEEecCCceEeC--------------
Confidence 58899 99999999999999999998655532 123 33321000 00000111111 00000
Q ss_pred CCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCC-----CHHHHH
Q 008534 258 LPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGL-----DSTTAL 332 (562)
Q Consensus 258 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgL-----D~~~~~ 332 (562)
..+.-++. .|+...||.- -.-.+=||-.-|=..|..||=..+++||+||=||+- |...+.
T Consensus 300 -----------vDISpFI~--~LP~g~dT~~--FsT~~ASGSTSqAAnI~EAlE~Ga~~LLiDEDtsATNfmiRD~rMq~ 364 (448)
T PF09818_consen 300 -----------VDISPFIN--NLPGGKDTTC--FSTENASGSTSQAANIMEALEAGARLLLIDEDTSATNFMIRDERMQA 364 (448)
T ss_pred -----------ccchHHHh--hCCCCCCCCc--ccccCCCchHHHHHHHHHHHHcCCCEEEEcCcccchheeehhHHHHH
Confidence 00112233 2355555431 112457999999999999999999999999999975 554444
Q ss_pred HH----------HHHHHHHH-HCCcEEEEEecCCChHHHhcCCEEEEEcCCeE
Q 008534 333 RI----------VQMLQDIA-EAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374 (562)
Q Consensus 333 ~i----------~~~L~~l~-~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~i 374 (562)
.+ ++.++.+. +.|.+.|+++-- +...+..+|+|++|++-+.
T Consensus 365 Lv~k~kEPITPfidrvr~l~~~~GvStIlV~Gg-sgdy~~vAD~Vi~Md~Y~~ 416 (448)
T PF09818_consen 365 LVSKEKEPITPFIDRVRSLYEKLGVSTILVVGG-SGDYFDVADRVIMMDEYRP 416 (448)
T ss_pred hhccCCCCcchHHHHHHHHHHHcCceEEEEecc-chhhHhhCCEEEEecCccc
Confidence 44 55666774 458877777755 4457899999999988764
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry consists of various predicted ABC transporter class ATPases. |
| >PF13555 AAA_29: P-loop containing region of AAA domain | Back alignment and domain information |
|---|
Probab=98.07 E-value=4.6e-06 Score=66.22 Aligned_cols=36 Identities=42% Similarity=0.734 Sum_probs=29.4
Q ss_pred eeceEEEEeC-CeEEEEECCCCCcHHHHHHHHHcCCC
Q 008534 173 LNGITGSVNP-GEVLALMGPSGSGKTTLLNLLSGRLM 208 (562)
Q Consensus 173 L~~vs~~i~~-Ge~~alvGpsGsGKSTLl~~L~G~l~ 208 (562)
+++.++.+.+ |.+++|.||||||||||+++|.=.++
T Consensus 12 f~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~ 48 (62)
T PF13555_consen 12 FDGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLY 48 (62)
T ss_pred cCCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHc
Confidence 4556777875 57999999999999999999985443
|
|
| >PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.07 E-value=4.5e-06 Score=83.27 Aligned_cols=71 Identities=17% Similarity=0.298 Sum_probs=47.9
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccE----EEECCEeCChhccCcEEEEccCCCCCCCCCHHHHHHHHH
Q 008534 181 NPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGS----ITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAA 254 (562)
Q Consensus 181 ~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~----I~i~G~~~~~~~~~~igyV~Q~~~l~~~lTV~enl~~~~ 254 (562)
.+..+++|.||||||||||++.|++.+. +.+|. |.+|+.......+...+++++... +..+++.+.+.+..
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~--~~~g~~~v~i~~D~~~~~~~~~~~~g~~~~~~~-~~~~d~~~~~~~l~ 105 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQ--QDGELPAIQVPMDGFHLDNAVLDAHGLRPRKGA-PETFDVAGLAALLR 105 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhh--hccCCceEEEecccccCCHHHHHhcccccccCC-CCCCCHHHHHHHHH
Confidence 4567999999999999999999998664 34676 555554433333445677766433 34556666665543
|
|
| >TIGR00416 sms DNA repair protein RadA | Back alignment and domain information |
|---|
Probab=98.06 E-value=1.4e-05 Score=87.63 Aligned_cols=62 Identities=16% Similarity=0.181 Sum_probs=42.6
Q ss_pred hCCCEEEEeCCCCCC----C-----HHHHHHHHHHHHHHHH-CCcEEEEEecCCCh-------HHHhcCCEEEEEcCCe
Q 008534 312 INPSLLFLDEPTSGL----D-----STTALRIVQMLQDIAE-AGKTVVTTIHQPSS-------RLFHKFDKLILLGKGS 373 (562)
Q Consensus 312 ~~P~iLlLDEPTsgL----D-----~~~~~~i~~~L~~l~~-~g~Tvii~tH~~~~-------~i~~~~D~i~vL~~G~ 373 (562)
.+|+++++|.-++=. + ....++++..|.++++ .|.|+++++|...+ .+..++|.|+.|+.++
T Consensus 169 ~~~~~vVIDSIq~l~~~~~~~~~g~~~q~r~~~~~L~~~ak~~giTvllt~hvtkeg~~aG~~~le~lvD~VI~Le~~~ 247 (454)
T TIGR00416 169 ENPQACVIDSIQTLYSPDISSAPGSVSQVRECTAELMRLAKTRGIAIFIVGHVTKEGSIAGPKVLEHMVDTVLYFEGDR 247 (454)
T ss_pred cCCcEEEEecchhhcccccccCCCCHHHHHHHHHHHHHHHHHhCCEEEEEeccccCCccCCcccEeeeceEEEEEeccC
Confidence 478999999876521 1 2234556666777754 59999999996432 1456799999998654
|
The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)). |
| >PRK01889 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.05 E-value=9.1e-06 Score=86.55 Aligned_cols=78 Identities=23% Similarity=0.334 Sum_probs=59.6
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCC-hhccCcEEEEccCCCCCCCCCHHHHH
Q 008534 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS-KSLKSKIGFVTQDDVLFPHLTVKETL 250 (562)
Q Consensus 172 iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~-~~~~~~igyV~Q~~~l~~~lTV~enl 250 (562)
-++.+.-.+++|++++|+|+||+|||||++.|+|... +..|+|.+++.... ...++.+.+++|+..+++. ....++
T Consensus 184 gl~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~--~~~G~i~~~~~~g~~tt~~~~l~~l~~~~~l~Dt-pG~~~~ 260 (356)
T PRK01889 184 GLDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEV--QKTGAVREDDSKGRHTTTHRELHPLPSGGLLIDT-PGMREL 260 (356)
T ss_pred cHHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhcc--cceeeEEECCCCCcchhhhccEEEecCCCeecCC-Cchhhh
Confidence 3555666778999999999999999999999998543 45799999875432 2235679999999888864 566665
Q ss_pred HH
Q 008534 251 TY 252 (562)
Q Consensus 251 ~~ 252 (562)
.+
T Consensus 261 ~l 262 (356)
T PRK01889 261 QL 262 (356)
T ss_pred cc
Confidence 54
|
|
| >PRK03846 adenylylsulfate kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.05 E-value=2.7e-06 Score=82.90 Aligned_cols=56 Identities=32% Similarity=0.393 Sum_probs=43.0
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEccC
Q 008534 181 NPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQD 237 (562)
Q Consensus 181 ~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~~~igyV~Q~ 237 (562)
++|++++|+|+||||||||.+.|++.+.. .-.|.+.++|.++...+...++|++|+
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~-~~~~~~~ld~d~~~~~~~~~~~~~~~~ 77 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHE-LGVSTYLLDGDNVRHGLCSDLGFSDAD 77 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHh-CCCCEEEEcCEeHHhhhhhcCCcCccc
Confidence 67889999999999999999999986642 224789999988764444445666654
|
|
| >PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A | Back alignment and domain information |
|---|
Probab=98.02 E-value=1.1e-05 Score=68.93 Aligned_cols=48 Identities=33% Similarity=0.544 Sum_probs=36.6
Q ss_pred cCCCChhHHH-HHHHHHHHh------h------CCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 008534 293 VRGVSGGERK-RVCIGNEII------I------NPSLLFLDEPTSGLDSTTALRIVQMLQD 340 (562)
Q Consensus 293 ~~~LSGGqrq-Rv~IAraLl------~------~P~iLlLDEPTsgLD~~~~~~i~~~L~~ 340 (562)
..++|||||| .+.++.+++ . .|++++|||||++||+.....+++.|++
T Consensus 30 ~~~~SGGEk~~~~~l~l~aal~~~~~~~~~~~~~~~~l~lDEaF~~lD~~~~~~~~~~l~~ 90 (90)
T PF13558_consen 30 FGTLSGGEKQFPFYLALAAALAALYSSSSGRGDSPRLLFLDEAFSKLDEENIERLMDLLRQ 90 (90)
T ss_dssp GGGS-HHHHHHHHHHHHHHHHHHHHHTTSTS-TTBSEEEEESTTTTCGHHHHHHHHHHHHH
T ss_pred CCCCChhHhHHHHHHHHHHHHHHHHhhhcCCCCCcCEEEEeCCCCcCCHHHHHHHHHHHhC
Confidence 4679999995 444443332 2 3799999999999999999999999874
|
|
| >TIGR00235 udk uridine kinase | Back alignment and domain information |
|---|
Probab=98.01 E-value=2.3e-06 Score=83.90 Aligned_cols=27 Identities=37% Similarity=0.535 Sum_probs=25.0
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 008534 181 NPGEVLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 181 ~~Ge~~alvGpsGsGKSTLl~~L~G~l 207 (562)
++|++++|+||||||||||++.|++.+
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l 30 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQL 30 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999999999854
|
Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below |
| >cd01876 YihA_EngB The YihA (EngB) subfamily | Back alignment and domain information |
|---|
Probab=98.01 E-value=7.2e-06 Score=75.30 Aligned_cols=64 Identities=14% Similarity=0.174 Sum_probs=41.2
Q ss_pred HHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHH-----hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 008534 270 RAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEI-----IINPSLLFLDEPTSGLDSTTALRIVQMLQDI 341 (562)
Q Consensus 270 ~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraL-----l~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l 341 (562)
.+...+...+.+- ..+.+ +...++++++++....... ...|+++ |+|++|.....++++.|.++
T Consensus 101 ~~~~~l~~~~~~v---i~v~n-K~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 101 EMLDWLEELGIPF---LVVLT-KADKLKKSELAKALKEIKKELKLFEIDPPII----LFSSLKGQGIDELRALIEKW 169 (170)
T ss_pred HHHHHHHHcCCCE---EEEEE-chhcCChHHHHHHHHHHHHHHHhccCCCceE----EEecCCCCCHHHHHHHHHHh
Confidence 3445565554331 12222 2345789998887666553 2345655 99999999999999888764
|
This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target. |
| >PRK10078 ribose 1,5-bisphosphokinase; Provisional | Back alignment and domain information |
|---|
Probab=98.00 E-value=6.9e-06 Score=79.22 Aligned_cols=37 Identities=38% Similarity=0.556 Sum_probs=30.1
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCC
Q 008534 183 GEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS 224 (562)
Q Consensus 183 Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~ 224 (562)
|++++|+||||||||||+++|++... ..+.+++..+.
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~-----~~~~~~~~~~~ 38 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQ-----TQLLVAHRYIT 38 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCC-----CeEEEcCEECC
Confidence 78999999999999999999998532 25777776654
|
|
| >TIGR00554 panK_bact pantothenate kinase, bacterial type | Back alignment and domain information |
|---|
Probab=97.98 E-value=6.1e-06 Score=85.33 Aligned_cols=73 Identities=10% Similarity=0.142 Sum_probs=48.1
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEE---CCEeCChhccCcEEEEccCCCCCCCCCHHHHHHHHHhh
Q 008534 183 GEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITY---NDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALL 256 (562)
Q Consensus 183 Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i---~G~~~~~~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~ 256 (562)
-.++||.||||||||||+++|.+.+...+.+|.|.+ ||.-.....++..++. |+..+.+.+++.+.+.+...+
T Consensus 62 p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~~~~~~l~~~g~~-~~~g~P~s~D~~~l~~~L~~L 137 (290)
T TIGR00554 62 PYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFLHPNQVLKERNLM-KKKGFPESYDMHRLVKFLSDL 137 (290)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecccccccHHHHHHcCCc-cccCCChhccHHHHHHHHHHH
Confidence 369999999999999999999986542233577655 4433333333345544 555566677777777665443
|
Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model. |
| >PRK00454 engB GTP-binding protein YsxC; Reviewed | Back alignment and domain information |
|---|
Probab=97.98 E-value=7.9e-05 Score=71.38 Aligned_cols=67 Identities=13% Similarity=0.200 Sum_probs=44.6
Q ss_pred HHHHHHHHcCCCccccccccCcccCCCChhHHHHHH--HHHHHhh-CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC
Q 008534 270 RAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC--IGNEIII-NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA 344 (562)
Q Consensus 270 ~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~--IAraLl~-~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~ 344 (562)
.+.+.++..+++- -.+++ ....+++||+|++. +++.+-. +++++ |+|++|.....++.+.|.++.++
T Consensus 126 ~i~~~l~~~~~~~---iiv~n-K~Dl~~~~~~~~~~~~i~~~l~~~~~~~~----~~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 126 QMIEWLKEYGIPV---LIVLT-KADKLKKGERKKQLKKVRKALKFGDDEVI----LFSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred HHHHHHHHcCCcE---EEEEE-CcccCCHHHHHHHHHHHHHHHHhcCCceE----EEEcCCCCCHHHHHHHHHHHhcC
Confidence 3445555555431 12222 34568999999987 5555543 34443 99999999999999999887654
|
|
| >PRK10416 signal recognition particle-docking protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=97.97 E-value=5.9e-06 Score=86.62 Aligned_cols=71 Identities=17% Similarity=0.208 Sum_probs=52.6
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh----------hccCcEEEEccCCCCCCCCCHHHHH
Q 008534 181 NPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----------SLKSKIGFVTQDDVLFPHLTVKETL 250 (562)
Q Consensus 181 ~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~----------~~~~~igyV~Q~~~l~~~lTV~enl 250 (562)
++|++++|+||||+||||++..|++.+. ..+++|.+.+.|..+ ..+..+.+++|.....|..++++++
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~--~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l 189 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYK--AQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAI 189 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHH--hcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHH
Confidence 5789999999999999999999998654 346789887776521 1245688998876555555666666
Q ss_pred HHH
Q 008534 251 TYA 253 (562)
Q Consensus 251 ~~~ 253 (562)
..+
T Consensus 190 ~~~ 192 (318)
T PRK10416 190 QAA 192 (318)
T ss_pred HHH
Confidence 543
|
|
| >TIGR00152 dephospho-CoA kinase | Back alignment and domain information |
|---|
Probab=97.96 E-value=9.5e-06 Score=78.30 Aligned_cols=73 Identities=16% Similarity=0.192 Sum_probs=60.9
Q ss_pred hhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCCh-HHHhcCCEEEEEcCC
Q 008534 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSS-RLFHKFDKLILLGKG 372 (562)
Q Consensus 298 GGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~-~i~~~~D~i~vL~~G 372 (562)
-|+-+|..||..+..+|+.+..+| +.+||....++.+.+.+....|.+||+.+|.+.. .+...||.+++++.+
T Consensus 60 ~g~idr~~L~~~vf~~~~~~~~le--~ilhP~i~~~i~~~i~~~~~~~~~vvi~~pll~e~~~~~~~D~vv~V~~~ 133 (188)
T TIGR00152 60 DGELDRKALGERVFNDPEELKWLN--NLLHPLIREWMKKLLAQFQSKLAYVLLDVPLLFENKLRSLCDRVIVVDVS 133 (188)
T ss_pred CCCCCHHHHHHHHhCCHHHHHHHH--HhhCHHHHHHHHHHHHHhhcCCCEEEEEchHhhhCCcHHhCCEEEEEECC
Confidence 378899999999999999988887 7899999999999998876556799999998742 245689999887543
|
This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases. |
| >TIGR02903 spore_lon_C ATP-dependent protease, Lon family | Back alignment and domain information |
|---|
Probab=97.93 E-value=2.9e-05 Score=88.36 Aligned_cols=111 Identities=21% Similarity=0.275 Sum_probs=67.5
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCC------CCccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHHHHHHHHhh
Q 008534 183 GEVLALMGPSGSGKTTLLNLLSGRLMEP------TVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALL 256 (562)
Q Consensus 183 Ge~~alvGpsGsGKSTLl~~L~G~l~~~------~~~G~I~i~G~~~~~~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~ 256 (562)
.+.++|+||||+|||||+++|.+..... ...+-|.+||..+.... ....+-.++.
T Consensus 175 ~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~-----------------~~i~~~llg~-- 235 (615)
T TIGR02903 175 PQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDP-----------------REVTNPLLGS-- 235 (615)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCH-----------------HHHhHHhcCC--
Confidence 4569999999999999999998743210 11233555554321000 0001111110
Q ss_pred CCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH
Q 008534 257 RLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQ 336 (562)
Q Consensus 257 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~ 336 (562)
.. +.....+...++..|+.+..+.. +..+||| +||||| +..||+..+..+++
T Consensus 236 -----~~-~~~~~~a~~~l~~~gl~~~~~g~-----v~~asgG----------------vL~LDE-i~~Ld~~~Q~~Ll~ 287 (615)
T TIGR02903 236 -----VH-DPIYQGARRDLAETGVPEPKTGL-----VTDAHGG----------------VLFIDE-IGELDPLLQNKLLK 287 (615)
T ss_pred -----cc-HHHHHHHHHHHHHcCCCchhcCc-----hhhcCCC----------------eEEEec-cccCCHHHHHHHHH
Confidence 01 11112344456777876555443 4578888 999999 79999999999999
Q ss_pred HHHH
Q 008534 337 MLQD 340 (562)
Q Consensus 337 ~L~~ 340 (562)
.|++
T Consensus 288 ~Le~ 291 (615)
T TIGR02903 288 VLED 291 (615)
T ss_pred HHhh
Confidence 8875
|
Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC. |
| >PRK08149 ATP synthase SpaL; Validated | Back alignment and domain information |
|---|
Probab=97.93 E-value=1.6e-05 Score=86.22 Aligned_cols=68 Identities=22% Similarity=0.334 Sum_probs=53.2
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC--CccEEEECCEeCCh----h----ccCcEEEEccCC
Q 008534 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPT--VGGSITYNDHPYSK----S----LKSKIGFVTQDD 238 (562)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~--~~G~I~i~G~~~~~----~----~~~~igyV~Q~~ 238 (562)
+..+++++ +++.+||+++|+|+||+|||||+++|++. ..+. .-|.|-.+|.++.. . ..+++++|+...
T Consensus 138 Gi~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~-~~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~s 215 (428)
T PRK08149 138 GVRAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEH-SEADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATS 215 (428)
T ss_pred CcEEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcC-CCCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECC
Confidence 45799999 99999999999999999999999999974 3332 12888888887642 1 235678887654
|
|
| >cd01121 Sms Sms (bacterial radA) DNA repair protein | Back alignment and domain information |
|---|
Probab=97.89 E-value=5.7e-05 Score=80.88 Aligned_cols=36 Identities=39% Similarity=0.650 Sum_probs=29.2
Q ss_pred eeece-EEEEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 008534 172 ILNGI-TGSVNPGEVLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 172 iL~~v-s~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l 207 (562)
-|+.+ .+=+.+|+++.|.|++|+|||||+..++...
T Consensus 70 eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~ 106 (372)
T cd01121 70 ELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARL 106 (372)
T ss_pred HHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 34443 2468999999999999999999999988644
|
This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules. |
| >TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB | Back alignment and domain information |
|---|
Probab=97.87 E-value=7.9e-05 Score=79.41 Aligned_cols=43 Identities=30% Similarity=0.461 Sum_probs=31.1
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCC-CCCccEEEECCEeC
Q 008534 181 NPGEVLALMGPSGSGKTTLLNLLSGRLME-PTVGGSITYNDHPY 223 (562)
Q Consensus 181 ~~Ge~~alvGpsGsGKSTLl~~L~G~l~~-~~~~G~I~i~G~~~ 223 (562)
++|.+++|+||+||||||+|++|++.+.. ++..+.|.....|+
T Consensus 132 ~~~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~Edpi 175 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPI 175 (358)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCc
Confidence 58899999999999999999999985532 22233554444443
|
Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems. |
| >PRK13764 ATPase; Provisional | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00011 Score=82.91 Aligned_cols=64 Identities=19% Similarity=0.387 Sum_probs=47.9
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEec---------------CCChHHHhcCCEEEEEcCCeE
Q 008534 310 IIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIH---------------QPSSRLFHKFDKLILLGKGSL 374 (562)
Q Consensus 310 Ll~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH---------------~~~~~i~~~~D~i~vL~~G~i 374 (562)
|..+|+++++||.-. .++ ++.+..++..|..++.+.| ++. .+...+|+|+.+++|++
T Consensus 321 LR~rPD~IivGEiRd---~Et----~~~~~~l~~ag~GvigTlHA~sa~~Ai~Rl~~~v~lg-~i~~iID~IV~I~~G~I 392 (602)
T PRK13764 321 LLVRPDYTIYDEMRK---TED----FKIFADMRLAGVGMVGVVHATRPIDAIQRFIGRVELG-MIPQIVDTVIFIEDGEV 392 (602)
T ss_pred HhhCCCEEEECCCCC---HHH----HHHHHHHHHcCCeEEEEECCCCHHHHHHHHHhhhhhc-hHHHhhcEEEEEeCCEE
Confidence 678999999999974 332 3444444445778999999 654 35678999999999999
Q ss_pred --EEecChH
Q 008534 375 --LYFGKAS 381 (562)
Q Consensus 375 --v~~G~~~ 381 (562)
+|.++..
T Consensus 393 ~~v~~~~~~ 401 (602)
T PRK13764 393 SKVYDLEFT 401 (602)
T ss_pred EEEEeeeeE
Confidence 7777643
|
|
| >TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN | Back alignment and domain information |
|---|
Probab=97.86 E-value=4e-05 Score=73.02 Aligned_cols=25 Identities=48% Similarity=0.895 Sum_probs=23.0
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 008534 183 GEVLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 183 Ge~~alvGpsGsGKSTLl~~L~G~l 207 (562)
|++++|+||||||||||++.|++.+
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~~ 25 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARL 25 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 6789999999999999999999754
|
Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP. |
| >PLN02318 phosphoribulokinase/uridine kinase | Back alignment and domain information |
|---|
Probab=97.83 E-value=1.5e-05 Score=88.67 Aligned_cols=63 Identities=21% Similarity=0.179 Sum_probs=51.4
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHHHHHH
Q 008534 184 EVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTY 252 (562)
Q Consensus 184 e~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~~~igyV~Q~~~l~~~lTV~enl~~ 252 (562)
-+++|.||||||||||++.|++.+ +..|.|.+||.... .+.+.+.+|++..++..++.++|.-
T Consensus 66 iIIGIaGpSGSGKTTLAk~LaglL---p~vgvIsmDdy~~~---~~~i~~nfD~P~a~D~d~L~enL~~ 128 (656)
T PLN02318 66 ILVGVAGPSGAGKTVFTEKVLNFM---PSIAVISMDNYNDS---SRIIDGNFDDPRLTDYDTLLDNIHD 128 (656)
T ss_pred EEEEEECCCCCcHHHHHHHHHhhC---CCcEEEEEcceecc---hhhhCccCCChhhcchhHHHHHHHH
Confidence 489999999999999999999865 23689999997522 2346788999988888899999864
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 562 | ||||
| 1l2t_A | 235 | Dimeric Structure Of Mj0796, A Bacterial Abc Transp | 9e-21 | ||
| 3tif_A | 235 | Dimeric Structure Of A Post-Hydrolysis State Of The | 1e-20 | ||
| 1f3o_A | 235 | Crystal Structure Of Mj0796 Atp-Binding Cassette Le | 1e-19 | ||
| 2yyz_A | 359 | Crystal Structure Of Sugar Abc Transporter, Atp-Bin | 7e-19 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 1e-18 | ||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 1e-18 | ||
| 2ixf_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 2e-18 | ||
| 2pcj_A | 224 | Crystal Structure Of Abc Transporter (Aq_297) From | 3e-18 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 3e-18 | ||
| 3c41_J | 242 | Abc Protein Artp In Complex With Amp-PnpMG2+ Length | 6e-18 | ||
| 1mv5_A | 243 | Crystal Structure Of Lmra Atp-Binding Domain Length | 6e-18 | ||
| 2it1_A | 362 | Structure Of Ph0203 Protein From Pyrococcus Horikos | 7e-18 | ||
| 2olj_A | 263 | Abc Protein Artp In Complex With AdpMG2+ Length = 2 | 7e-18 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 2e-17 | ||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 2e-17 | ||
| 1oxs_C | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 2e-17 | ||
| 1q1b_A | 381 | Crystal Structure Of E. Coli Malk In The Nucleotide | 2e-17 | ||
| 1q12_A | 381 | Crystal Structure Of The Atp-bound E. Coli Malk Len | 2e-17 | ||
| 1mt0_A | 241 | Atp-Binding Domain Of Haemolysin B From Escherichia | 2e-17 | ||
| 2ff7_A | 247 | The Abc-Atpase Of The Abc-Transporter Hlyb In The A | 2e-17 | ||
| 3d31_A | 348 | Modbc From Methanosarcina Acetivorans Length = 348 | 2e-17 | ||
| 2pmk_A | 243 | Crystal Structures Of An Isolated Abc-Atpase In Com | 2e-17 | ||
| 2ixe_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 3e-17 | ||
| 2r6g_A | 381 | The Crystal Structure Of The E. Coli Maltose Transp | 5e-17 | ||
| 3b5j_A | 243 | Crystal Structures Of The S504a Mutant Of An Isolat | 5e-17 | ||
| 1vci_A | 373 | Crystal Structure Of The Atp-binding Cassette Of Mu | 6e-17 | ||
| 1v43_A | 372 | Crystal Structure Of Atpase Subunit Of Abc Sugar Tr | 6e-17 | ||
| 2ffb_A | 247 | The Crystal Structure Of The Hlyb-Nbd E631q Mutant | 6e-17 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 6e-17 | ||
| 1oxx_K | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 9e-17 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 1e-16 | ||
| 3qf4_A | 587 | Crystal Structure Of A Heterodimeric Abc Transporte | 2e-16 | ||
| 3fvq_A | 359 | Crystal Structure Of The Nucleotide Binding Domain | 2e-16 | ||
| 1g29_1 | 372 | Malk Length = 372 | 3e-16 | ||
| 1xef_A | 241 | Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI | 4e-16 | ||
| 2ffa_A | 247 | Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr | 4e-16 | ||
| 2ixg_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 7e-16 | ||
| 2d62_A | 375 | Crystal Structure Of Multiple Sugar Binding Transpo | 7e-16 | ||
| 2yz2_A | 266 | Crystal Structure Of The Abc Transporter In The Cob | 1e-15 | ||
| 4hlu_A | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 2e-15 | ||
| 2ghi_A | 260 | Crystal Structure Of Plasmodium Yoelii Multidrug Re | 2e-15 | ||
| 3nh6_A | 306 | Nucleotide Binding Domain Of Human Abcb6 (Apo Struc | 2e-15 | ||
| 3gfo_A | 275 | Structure Of Cbio1 From Clostridium Perfringens: Pa | 5e-15 | ||
| 1jj7_A | 260 | Crystal Structure Of The C-Terminal Atpase Domain O | 7e-15 | ||
| 3b5x_A | 582 | Crystal Structure Of Msba From Vibrio Cholerae Leng | 2e-14 | ||
| 3qf4_B | 598 | Crystal Structure Of A Heterodimeric Abc Transporte | 2e-14 | ||
| 1vpl_A | 256 | Crystal Structure Of Abc Transporter Atp-binding Pr | 4e-14 | ||
| 1b0u_A | 262 | Atp-Binding Subunit Of The Histidine Permease From | 3e-13 | ||
| 3dhw_C | 343 | Crystal Structure Of Methionine Importer Metni Leng | 7e-13 | ||
| 3b5y_A | 582 | Crystal Structure Of Msba From Salmonella Typhimuri | 1e-12 | ||
| 3tui_C | 366 | Inward Facing Conformations Of The Metni Methionine | 1e-12 | ||
| 3tuj_C | 366 | Inward Facing Conformations Of The Metni Methionine | 2e-12 | ||
| 2onk_A | 240 | Abc Transporter Modbc In Complex With Its Binding P | 8e-12 | ||
| 3b5w_A | 582 | Crystal Structure Of Eschericia Coli Msba Length = | 9e-12 | ||
| 2nq2_C | 253 | An Inward-Facing Conformation Of A Putative Metal-C | 1e-11 | ||
| 4dbl_C | 249 | Crystal Structure Of E159q Mutant Of Btucdf Length | 2e-11 | ||
| 4fi3_C | 249 | Structure Of Vitamin B12 Transporter Btucd-F In A N | 3e-11 | ||
| 2d3w_A | 248 | Crystal Structure Of Escherichia Coli Sufc, An Atpa | 3e-11 | ||
| 2qi9_C | 249 | Abc-Transporter Btucd In Complex With Its Periplasm | 4e-11 | ||
| 1l7v_C | 249 | Bacterial Abc Transporter Involved In B12 Uptake Le | 4e-11 | ||
| 2zu0_C | 267 | Crystal Structure Of Sufc-Sufd Complex Involved In | 4e-11 | ||
| 1ji0_A | 240 | Crystal Structure Analysis Of The Abc Transporter F | 5e-11 | ||
| 4hlu_D | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 2e-10 | ||
| 2pzg_A | 241 | Minimal Human Cftr First Nucleotide Binding Domain | 3e-10 | ||
| 4g1u_C | 266 | X-Ray Structure Of The Bacterial Heme Transporter H | 1e-09 | ||
| 2bbs_A | 290 | Human Deltaf508 Nbd1 With Three Solubilizing Mutati | 1e-09 | ||
| 2bbt_A | 290 | Human Deltaf508 Nbd1 With Two Solublizing Mutations | 1e-09 | ||
| 2pze_A | 229 | Minimal Human Cftr First Nucleotide Binding Domain | 1e-09 | ||
| 1g6h_A | 257 | Crystal Structure Of The Adp Conformation Of Mj1267 | 2e-09 | ||
| 2pzf_A | 228 | Minimal Human Cftr First Nucleotide Binding Domain | 3e-09 | ||
| 1q3h_A | 286 | Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | 3e-09 | ||
| 1r0z_A | 286 | Phosphorylated Cystic Fibrosis Transmembrane Conduc | 3e-09 | ||
| 1gaj_A | 257 | Crystal Structure Of A Nucleotide-Free Atp-Binding | 6e-09 | ||
| 3si7_A | 285 | The Crystal Structure Of The Nbd1 Domain Of The Mou | 7e-09 | ||
| 1xmi_A | 291 | Crystal Structure Of Human F508a Nbd1 Domain With A | 1e-08 | ||
| 1yqt_A | 538 | Rnase-L Inhibitor Length = 538 | 1e-08 | ||
| 1xfa_A | 283 | Structure Of Nbd1 From Murine Cftr- F508r Mutant Le | 2e-08 | ||
| 1xf9_A | 283 | Structure Of Nbd1 From Murine Cftr- F508s Mutant Le | 2e-08 | ||
| 1sgw_A | 214 | Putative Abc Transporter (Atp-Binding Protein) From | 2e-08 | ||
| 1g9x_A | 257 | Characterization Of The Twinning Structure Of Mj126 | 2e-08 | ||
| 2d2e_A | 250 | Crystal Structure Of Atypical Cytoplasmic Abc-Atpas | 5e-08 | ||
| 2ihy_A | 279 | Structure Of The Staphylococcus Aureus Putative Atp | 7e-08 | ||
| 2bbo_A | 291 | Human Nbd1 With Phe508 Length = 291 | 2e-07 | ||
| 1xmj_A | 290 | Crystal Structure Of Human Deltaf508 Human Nbd1 Dom | 4e-07 | ||
| 3bk7_A | 607 | Structure Of The Complete Abce1RNAASE-L Inhibitor P | 1e-06 | ||
| 3j15_B | 593 | Model Of Ribosome-Bound Archaeal Pelota And Abce1 L | 2e-06 | ||
| 3j16_B | 608 | Models Of Ribosome-Bound Dom34p And Rli1p And Their | 3e-06 | ||
| 4fwi_B | 334 | Crystal Structure Of The Nucleotide-binding Domain | 4e-06 | ||
| 2cbz_A | 237 | Structure Of The Human Multidrug Resistance Protein | 3e-05 | ||
| 3gd7_A | 390 | Crystal Structure Of Human Nbd2 Complexed With N6- | 7e-05 | ||
| 3pih_A | 916 | T. Maritima Uvra In Complex With Fluorescein-Modifi | 2e-04 | ||
| 3ozx_A | 538 | Crystal Structure Of Abce1 Of Sulfolubus Solfataric | 5e-04 |
| >pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235 | Back alignment and structure |
|
| >pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235 | Back alignment and structure |
|
| >pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235 | Back alignment and structure |
|
| >pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242 | Back alignment and structure |
|
| >pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243 | Back alignment and structure |
|
| >pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362 | Back alignment and structure |
|
| >pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381 | Back alignment and structure |
|
| >pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381 | Back alignment and structure |
|
| >pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241 | Back alignment and structure |
|
| >pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247 | Back alignment and structure |
|
| >pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348 | Back alignment and structure |
|
| >pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243 | Back alignment and structure |
|
| >pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381 | Back alignment and structure |
|
| >pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243 | Back alignment and structure |
|
| >pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373 | Back alignment and structure |
|
| >pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372 | Back alignment and structure |
|
| >pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587 | Back alignment and structure |
|
| >pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc Complexed With Atp Length = 359 | Back alignment and structure |
|
| >pdb|1G29|1 Chain 1, Malk Length = 372 | Back alignment and structure |
|
| >pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241 | Back alignment and structure |
|
| >pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (S621a, G622v, D645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375 | Back alignment and structure |
|
| >pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266 | Back alignment and structure |
|
| >pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260 | Back alignment and structure |
|
| >pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306 | Back alignment and structure |
|
| >pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275 | Back alignment and structure |
|
| >pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260 | Back alignment and structure |
|
| >pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582 | Back alignment and structure |
|
| >pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 598 | Back alignment and structure |
|
| >pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein (tm0544) From Thermotoga Maritima At 2.10 A Resolution Length = 256 | Back alignment and structure |
|
| >pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From Salmonella Typhimurium Length = 262 | Back alignment and structure |
|
| >pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343 | Back alignment and structure |
|
| >pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582 | Back alignment and structure |
|
| >pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein Moda Length = 240 | Back alignment and structure |
|
| >pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582 | Back alignment and structure |
|
| >pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate Type Abc Transporter. Length = 253 | Back alignment and structure |
|
| >pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf Length = 249 | Back alignment and structure |
|
| >pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A Nucleotide-Bound State Length = 249 | Back alignment and structure |
|
| >pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase Compenent Of The Suf Iron-Sulfur Cluster Assembly Machinery Length = 248 | Back alignment and structure |
|
| >pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic Binding Protein Btuf Length = 249 | Back alignment and structure |
|
| >pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake Length = 249 | Back alignment and structure |
|
| >pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The Iron- Sulfur Cluster Biosynthesis Length = 267 | Back alignment and structure |
|
| >pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From Thermotoga Maritima Length = 240 | Back alignment and structure |
|
| >pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Monomer Length = 241 | Back alignment and structure |
|
| >pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From Yersinia Pestis Length = 266 | Back alignment and structure |
|
| >pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations Length = 290 | Back alignment and structure |
|
| >pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations. Length = 290 | Back alignment and structure |
|
| >pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer Length = 229 | Back alignment and structure |
|
| >pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An Atp- Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer With Delta F508 Length = 228 | Back alignment and structure |
|
| >pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | Back alignment and structure |
|
| >pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1) With Atp Length = 286 | Back alignment and structure |
|
| >pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding Cassette From An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr Protein, Deltaf508 Mutant Length = 285 | Back alignment and structure |
|
| >pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp Length = 291 | Back alignment and structure |
|
| >pdb|1YQT|A Chain A, Rnase-L Inhibitor Length = 538 | Back alignment and structure |
|
| >pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant Length = 283 | Back alignment and structure |
|
| >pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant Length = 283 | Back alignment and structure |
|
| >pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From Pyrococcus Furiosus Pfu-867808-001 Length = 214 | Back alignment and structure |
|
| >pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An Atp-Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc From Thermus Thermophilus Hb8 Length = 250 | Back alignment and structure |
|
| >pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase Subunit Of An Atp-Binding Cassette (Abc) Transporter Length = 279 | Back alignment and structure |
|
| >pdb|2BBO|A Chain A, Human Nbd1 With Phe508 Length = 291 | Back alignment and structure |
|
| >pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain With Atp Length = 290 | Back alignment and structure |
|
| >pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein From Pyrococcus Abysii Length = 607 | Back alignment and structure |
|
| >pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1 Length = 593 | Back alignment and structure |
|
| >pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their Ribosomal Binding Partners Length = 608 | Back alignment and structure |
|
| >pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A Dipeptide Abc Transporter Length = 334 | Back alignment and structure |
|
| >pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1 Nucleotide Binding Domain 1 Length = 237 | Back alignment and structure |
|
| >pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6- Phenylethyl-Atp (P-Atp) Length = 390 | Back alignment and structure |
|
| >pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna Length = 916 | Back alignment and structure |
|
| >pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus (-Fes Domain) Length = 538 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 141 bits (357), Expect = 1e-38
Identities = 47/185 (25%), Positives = 87/185 (47%), Gaps = 15/185 (8%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---SLKS 229
L GI+ + GE+ L+GP+G+GKTT L ++S L++P+ G +T + ++
Sbjct: 31 LKGISFEIEEGEIFGLIGPNGAGKTTTLRIIST-LIKPS-SGIVTVFGKNVVEEPHEVRK 88
Query: 230 KIGFVTQDDVLFPHLTVKETLTY-AALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMI 288
I ++ ++ + ++ E L + A + E+ GL
Sbjct: 89 LISYLPEEAGAYRNMQGIEYLRFVAGFYASS----SSEIEEMVERATEIAGLGEKIK--- 141
Query: 289 GGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTV 348
V S G +++ I +++NP L LDEPTSGLD A + ++L+ ++ G T+
Sbjct: 142 --DRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTI 199
Query: 349 VTTIH 353
+ + H
Sbjct: 200 LVSSH 204
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 138 bits (350), Expect = 5e-38
Identities = 44/185 (23%), Positives = 92/185 (49%), Gaps = 15/185 (8%)
Query: 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKS 229
K +L IT ++ G V+ GP+G GKTTLL +S ++P G I YN P +K +K
Sbjct: 22 KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTIST-YLKPL-KGEIIYNGVPITK-VKG 78
Query: 230 KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIG 289
KI F+ ++ ++ ++V++ L A L + + +D + + + +
Sbjct: 79 KIFFLPEEIIVPRKISVEDYLKAVASLY-----GVKVNKNEIMDALESVEVLDLKKK--- 130
Query: 290 GSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA-EAGKTV 348
+ +S G +RV + + +++N + LD+P +D + ++++ + +I E G +
Sbjct: 131 ---LGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVI 187
Query: 349 VTTIH 353
+++
Sbjct: 188 ISSRE 192
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 133 bits (338), Expect = 1e-35
Identities = 53/231 (22%), Positives = 99/231 (42%), Gaps = 23/231 (9%)
Query: 168 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS- 226
+ K IL I+ + G+ L G +G+GKTTLLN+L+ P G++ K
Sbjct: 32 QGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYE--PATSGTVNLFGKMPGKVG 89
Query: 227 -----LKSKIGFVTQD--DVLFPHLTVKETLTYAAL--LRLPNTLTKQQKEKRAIDVINE 277
++ IGFV+ + V + + A + + + + + A ++
Sbjct: 90 YSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRN-EAHQLLKL 148
Query: 278 LGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQM 337
+G+ I +S GE++RV I ++ P +L LDEP +GLD ++ +
Sbjct: 149 VGMSAKAQQYI-----GYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSI 203
Query: 338 LQDIAEAGKT---VVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385
L ++++ T + T H + F K++LL G + G + +
Sbjct: 204 LDSLSDSYPTLAMIYVT-HFIEE-ITANFSKILLLKDGQSIQQGAVEDILT 252
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 130 bits (329), Expect = 2e-32
Identities = 66/227 (29%), Positives = 111/227 (48%), Gaps = 44/227 (19%)
Query: 125 DIPEDIEAGTRERPKFQTEPTLPIYLKFTDVT--YKVILKGMTSSEEKDILNGITGSVNP 182
D ++ + G R + + L+F +VT Y E L I +
Sbjct: 323 DSEQEKDEGKRVIDRATGD------LEFRNVTFTYP--------GREVPALRNINLKIPA 368
Query: 183 GEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP---YS-KSLKSKIGFVTQDD 238
G+ +AL+G SGSGK+T+ +L++ R + G I + H Y+ SL++++ V+Q+
Sbjct: 369 GKTVALVGRSGSGKSTIASLIT-RFYDID-EGHILMDGHDLREYTLASLRNQVALVSQNV 426
Query: 239 VLFPHLTVKETLTYAALLRLPNTLTKQQ-----KEKRAIDVINEL--GLERCQDTMIGGS 291
LF + TV + YA +++Q + A+D IN++ GL DT+IG
Sbjct: 427 HLF-NDTVANNIAYAR----TEEYSREQIEEAARMAYAMDFINKMDNGL----DTIIGE- 476
Query: 292 FVRGV--SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQ 336
GV SGG+R+R+ I ++ + +L LDE TS LD+ + R +Q
Sbjct: 477 --NGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESE-RAIQ 520
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 122 bits (309), Expect = 6e-32
Identities = 74/233 (31%), Positives = 112/233 (48%), Gaps = 34/233 (14%)
Query: 168 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS--- 224
+ + IL I+ P ++A GPSG GK+T+ +LL R +PT G IT + P
Sbjct: 13 DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLE-RFYQPT-AGEITIDGQPIDNIS 70
Query: 225 -KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQ-----KEKRAIDVINEL 278
++ +S+IGFV+QD + T++E LTY L T + A + +
Sbjct: 71 LENWRSQIGFVSQDSAIM-AGTIRENLTYG----LEGDYTDEDLWQVLDLAFARSFVENM 125
Query: 279 --GLERCQDTMIGGSFVRGV--SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRI 334
L +T +G RGV SGG+R+R+ I + NP +L LDE T+ LDS + +
Sbjct: 126 PDQL----NTEVGE---RGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESE-SM 177
Query: 335 VQMLQDIAEAGKTVVTTIHQPSSRL--FHKFDKLILLGKGSLLYFGKASEAMA 385
VQ D G+T + H RL DK+ + KG + GK +E +A
Sbjct: 178 VQKALDSLMKGRTTLVIAH----RLSTIVDADKIYFIEKGQITGSGKHNELVA 226
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 121 bits (307), Expect = 6e-32
Identities = 66/216 (30%), Positives = 98/216 (45%), Gaps = 33/216 (15%)
Query: 171 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKS- 229
+IL GI+ SV GE ++++G SGSGK+TLL +L G L PT G +
Sbjct: 18 EILKGISLSVKKGEFVSIIGASGSGKSTLLYIL-GLLDAPT-EGKVFLEGKEVDY-TNEK 74
Query: 230 --------KIGFVTQDDVLFPHLTVKET----LTYAALLRLPNTLTKQQKEKRAIDVINE 277
K+GFV Q L P LT E + K++ ++R +++E
Sbjct: 75 ELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMGK-------PKKEAKERGEYLLSE 127
Query: 278 LGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQM 337
LGL D + +SGGE++RV I + P LLF DEPT LDS R++ +
Sbjct: 128 LGLG---DKL--SRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDI 182
Query: 338 LQDIAEAGKTVVTTIHQP-----SSRLFHKFDKLIL 368
I E G ++V H+ + R D ++
Sbjct: 183 FLKINEGGTSIVMVTHERELAELTHRTLEMKDGKVV 218
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 128 bits (325), Expect = 7e-32
Identities = 67/227 (29%), Positives = 110/227 (48%), Gaps = 44/227 (19%)
Query: 125 DIPEDIEAGTRERPKFQTEPTLPIYLKFTDVT--YKVILKGMTSSEEKDILNGITGSVNP 182
D+ + + G E + E + DVT Y+ +EK L+ ++ S+
Sbjct: 323 DLETERDNGKYEAERVNGE------VDVKDVTFTYQ--------GKEKPALSHVSFSIPQ 368
Query: 183 GEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP---YS-KSLKSKIGFVTQDD 238
G+ +AL+G SGSGK+T+ NL + R + GSI + H Y +L+ V+Q+
Sbjct: 369 GKTVALVGRSGSGKSTIANLFT-RFYDVD-SGSICLDGHDVRDYKLTNLRRHFALVSQNV 426
Query: 239 VLFPHLTVKETLTYAALLRLPNTLTKQQ-----KEKRAIDVINEL--GLERCQDTMIGGS 291
LF + T+ + YAA T++Q ++ A++ I + GL DT+IG
Sbjct: 427 HLF-NDTIANNIAYAAEG----EYTREQIEQAARQAHAMEFIENMPQGL----DTVIGE- 476
Query: 292 FVRGV--SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQ 336
G SGG+R+RV I ++ + +L LDE TS LD+ + R +Q
Sbjct: 477 --NGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESE-RAIQ 520
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 121 bits (307), Expect = 1e-31
Identities = 59/220 (26%), Positives = 95/220 (43%), Gaps = 24/220 (10%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228
E + + +N G++LA++G +G GK+TLL+LL G + P G I +
Sbjct: 17 ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLG-IHRPI-QGKIE---------VY 65
Query: 229 SKIGFVTQD-DVLFPHLTVKETLTY--AALLRLPNTLTKQQKEKRAIDVINELGLERCQD 285
IGFV Q F +V + + + + + A+ ++ L L
Sbjct: 66 QSIGFVPQFFSSPFA-YSVLDIVLMGRSTHINTFAKPKSHDYQV-AMQALDYLNLTHLAK 123
Query: 286 TMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA-EA 344
+SGG+R+ + I I L+ LDEPTS LD ++ +L D+A
Sbjct: 124 REFT-----SLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQ 178
Query: 345 GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384
TVV T HQP+ + +K +LL K FG+ +
Sbjct: 179 NMTVVFTTHQPNQ-VVAIANKTLLLNKQ-NFKFGETRNIL 216
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 126 bits (318), Expect = 6e-31
Identities = 57/246 (23%), Positives = 96/246 (39%), Gaps = 31/246 (12%)
Query: 108 FTMPPDEIADSKPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLKFTDVTYKVILKGMTSS 167
T+P F D IP + E +F+ L+ + + +
Sbjct: 304 VTLPASVREGINIFLDGHIPAENLRFRTEALQFRIADATED-LQNDSASRAFSYPSLKKT 362
Query: 168 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227
+ +LN G + E+L +MG +G+GKTTL+ LL+G ++P G + S+
Sbjct: 363 QGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAG-ALKPD-EGQDIPK---LNVSM 417
Query: 228 KS-KIGFVTQDDV--LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQ 284
K KI V LF + L + DV+ L ++
Sbjct: 418 KPQKIAPKFPGTVRQLFFKKIRGQFLN----------------PQFQTDVVKPLRIDDII 461
Query: 285 DTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQD-IAE 343
D V+ +SGGE +RV I + I + +DEP++ LDS + ++++ I
Sbjct: 462 D-----QEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILH 516
Query: 344 AGKTVV 349
KT
Sbjct: 517 NKKTAF 522
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 115 bits (291), Expect = 2e-27
Identities = 50/218 (22%), Positives = 83/218 (38%), Gaps = 31/218 (14%)
Query: 146 LPIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSG 205
LP L+ VT++ +S + L + PG+VL L+G +G GK+T L +L+G
Sbjct: 75 LPTNLE-AHVTHRY----SANSFKLHRLP----TPRPGQVLGLVGTNGIGKSTALKILAG 125
Query: 206 RL--------MEPTVGGSITYND----HPYSKSLKSK-IGFVTQDD-VLFPHLTVKETLT 251
+ P I Y Y + I + + V +K +
Sbjct: 126 KQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQ 185
Query: 252 YAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEII 311
L L ++ + I L LE + + +SGGE +R IG +
Sbjct: 186 KVGELL---KLRMEKSPEDVKRYIKILQLEN-----VLKRDIEKLSGGELQRFAIGMSCV 237
Query: 312 INPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVV 349
+ DEP+S LD L Q+++ + K V+
Sbjct: 238 QEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVI 275
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 119 bits (300), Expect = 1e-30
Identities = 67/234 (28%), Positives = 116/234 (49%), Gaps = 35/234 (14%)
Query: 167 SEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS-- 224
+ IL+ I S+ GEV+ ++G SGSGK+TL L+ R P G + + H +
Sbjct: 19 PDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQ-RFYIPE-NGQVLIDGHDLALA 76
Query: 225 --KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQ-----KEKRAIDVINE 277
L+ ++G V QD+VL + ++ + ++ A P ++ ++ K A D I+E
Sbjct: 77 DPNWLRRQVGVVLQDNVLL-NRSIIDNISLAN----PG-MSVEKVIYAAKLAGAHDFISE 130
Query: 278 L--GLERCQDTMIGGSFVRGV--SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALR 333
L G +T++G +G SGG+R+R+ I ++ NP +L DE TS LD +
Sbjct: 131 LREGY----NTIVGE---QGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESE-H 182
Query: 334 IVQMLQDIAEAGKTVVTTIHQPSSRL--FHKFDKLILLGKGSLLYFGKASEAMA 385
++ G+TV+ H RL D++I++ KG ++ GK E ++
Sbjct: 183 VIMRNMHKICKGRTVIIIAH----RLSTVKNADRIIVMEKGKIVEQGKHKELLS 232
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 123 bits (310), Expect = 4e-30
Identities = 55/243 (22%), Positives = 94/243 (38%), Gaps = 28/243 (11%)
Query: 108 FTMPPDEIADSKPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLKFTDVTYKVILKGMTSS 167
F+ P F + ++ KF + T VTY +
Sbjct: 241 FSQPKGTRNGINEFLRGYLKDENVRFRPYEIKFTKTGERVEIERETLVTYP----RLVKD 296
Query: 168 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227
L G + GEV+ ++GP+G GKTT + +L+G + EPT G I ++
Sbjct: 297 YGSFRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAG-VEEPT-EGKIEWD-------- 346
Query: 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTM 287
+ + Q TV E L+ +K +++ LG+ D
Sbjct: 347 -LTVAYKPQYIKADYEGTVYELLSKIDA-------SKLNSNFYKTELLKPLGIIDLYD-- 396
Query: 288 IGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGK 346
V +SGGE +RV I ++ + + LDEP++ LD L + + ++ + E K
Sbjct: 397 ---REVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEK 453
Query: 347 TVV 349
T +
Sbjct: 454 TAL 456
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 106 bits (267), Expect = 1e-24
Identities = 47/184 (25%), Positives = 84/184 (45%), Gaps = 27/184 (14%)
Query: 179 SVNPGEVLALMGPSGSGKTTLLNLLSGRLM------EPTVGGSITYND----HPYSKSLK 228
V G V+ ++GP+G+GK+T + +L+G+L+ + G I Y + LK
Sbjct: 43 VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLK 102
Query: 229 -SKIGFVTQDDV--LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQD 285
+I V + L P + + L K + + +V+ L LE +
Sbjct: 103 NGEIRPVVKPQYVDLIPKAVKGKVIE---------LLKKADETGKLEEVVKALELENVLE 153
Query: 286 TMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAG 345
++ +SGGE +RV I ++ N + F DEP+S LD L + ++ ++E G
Sbjct: 154 -----REIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEG 208
Query: 346 KTVV 349
K+V+
Sbjct: 209 KSVL 212
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 117 bits (296), Expect = 4e-30
Identities = 56/227 (24%), Positives = 93/227 (40%), Gaps = 28/227 (12%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---- 224
E L ++G V GE+L L+GP+G+GK+TLL ++G M GSI + P
Sbjct: 12 ESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAG--MTSG-KGSIQFAGQPLEAWSA 68
Query: 225 KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQ 284
L +++Q V Y L + K +++N++
Sbjct: 69 TKLALHRAYLSQQQTPPFATPVWH---YLTLHQHD---------KTRTELLNDV-AGALA 115
Query: 285 DTMIGGSFVRGVSGGERKRVCI-------GNEIIINPSLLFLDEPTSGLDSTTALRIVQM 337
G +SGGE +RV + + LL LDEP + LD + ++
Sbjct: 116 LDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKI 175
Query: 338 LQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384
L +++ G +V + H + L H + LL G +L G+ E +
Sbjct: 176 LSALSQQGLAIVMSSHDLNHTLRH-AHRAWLLKGGKMLASGRREEVL 221
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 116 bits (293), Expect = 7e-30
Identities = 63/200 (31%), Positives = 103/200 (51%), Gaps = 19/200 (9%)
Query: 167 SEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS 226
E L + ++ GE +++MGPSGSGK+T+LN++ G L +PT G + ++ +
Sbjct: 15 EEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNII-GCLDKPT-EGEVYIDNIKTND- 71
Query: 227 LKS---------KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINE 277
L KIGFV Q L P LT E + + + ++ +++ KRA++ +
Sbjct: 72 LDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKM 131
Query: 278 LGL-ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQ 336
L ER + +SGG+++RV I + NP ++ D+PT LDS T +I+Q
Sbjct: 132 AELEERFANHKPN-----QLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQ 186
Query: 337 MLQDI-AEAGKTVVTTIHQP 355
+L+ + E GKTVV H
Sbjct: 187 LLKKLNEEDGKTVVVVTHDI 206
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 122 bits (308), Expect = 1e-29
Identities = 52/243 (21%), Positives = 93/243 (38%), Gaps = 28/243 (11%)
Query: 108 FTMPPDEIADSKPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLKFTDVTYKVILKGMTSS 167
F+ P F + ++ R RP L + V +
Sbjct: 311 FSKPKGTRNGINEFLQGYLKDE---NVRFRPYEIRFTKLS-ERVDVERETLVEYPRLVKD 366
Query: 168 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227
L G + GEV+ ++GP+G GKTT + +L+G + EPT G + ++
Sbjct: 367 YGSFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAG-VEEPT-EGKVEWDL------- 417
Query: 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTM 287
+ + Q TV E L+ +L + +++ LG+ D
Sbjct: 418 --TVAYKPQYIKAEYEGTVYELLSKIDSSKLNS-------NFYKTELLKPLGIIDLYDRN 468
Query: 288 IGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGK 346
+ SGGE +RV I ++ + + LDEP++ LD L + + ++ + E K
Sbjct: 469 VE-DL----SGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEK 523
Query: 347 TVV 349
T +
Sbjct: 524 TAL 526
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 114 bits (288), Expect = 4e-27
Identities = 43/192 (22%), Positives = 81/192 (42%), Gaps = 23/192 (11%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLM----EPTVGGSITYNDHPYS 224
+ V G V+ ++GP+G+GKTT + +L+G+L+ E +
Sbjct: 103 VNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGN 162
Query: 225 -------KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINE 277
+ +I V + ++ + + L L K + + +V+ E
Sbjct: 163 ELQNYFERLKNGEIRPVVKP----QYVDLLPKAVKGKVREL---LKKVDEVGKFEEVVKE 215
Query: 278 LGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQM 337
L LE + + +SGGE +RV I ++ F DEP+S LD L++ ++
Sbjct: 216 LELEN-----VLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARV 270
Query: 338 LQDIAEAGKTVV 349
++ +A GK V+
Sbjct: 271 IRRLANEGKAVL 282
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 121 bits (307), Expect = 1e-29
Identities = 74/247 (29%), Positives = 106/247 (42%), Gaps = 61/247 (24%)
Query: 125 DIPEDIE--AGTRERPKFQTEPTLPIYLKFTDVT--YKVILKGMTSSEEKDILNGITGSV 180
D DI+ G + Q + V+ Y E IL I S+
Sbjct: 319 DEDYDIKNGVGAQPIEIKQGR------IDIDHVSFQYN--------DNEAPILKDINLSI 364
Query: 181 NPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP---YS-KSLKSKIGFVTQ 236
GE +A +G SG GK+TL+NL+ R + T G I + H + SL+++IG V Q
Sbjct: 365 EKGETVAFVGMSGGGKSTLINLIP-RFYDVT-SGQILIDGHNIKDFLTGSLRNQIGLVQQ 422
Query: 237 DDVLFPHLTVKETLTY------------AALLRLPNTLTKQQKEKRAIDVINEL--GLER 282
D++LF TVKE + AA K A D I L G
Sbjct: 423 DNILF-SDTVKENILLGRPTATDEEVVEAA------------KMANAHDFIMNLPQGY-- 467
Query: 283 CQDTMIGGSFVRGV--SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQD 340
DT +G RGV SGG+++R+ I + NP +L LDE TS LD + I + L
Sbjct: 468 --DTEVGE---RGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDV 522
Query: 341 IAEAGKT 347
+++ +T
Sbjct: 523 LSK-DRT 528
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 116 bits (292), Expect = 2e-29
Identities = 68/246 (27%), Positives = 112/246 (45%), Gaps = 31/246 (12%)
Query: 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME 209
++F+DV + L I + G AL+G +GSGK+T+ LL R +
Sbjct: 18 IEFSDVNF-----SYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLY-RFYD 71
Query: 210 PTVGGSITYNDHPYS----KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQ 265
G I + S++S IG V QD +LF + T+K + Y L + K
Sbjct: 72 AE--GDIKIGGKNVNKYNRNSIRSIIGIVPQDTILF-NETIKYNILYGKLDATDEEVIKA 128
Query: 266 QKEKRAIDVINEL--GLERCQDTMIGGSFVRGV--SGGERKRVCIGNEIIINPSLLFLDE 321
K + D I L DT++G +G+ SGGER+R+ I ++ +P ++ DE
Sbjct: 129 TKSAQLYDFIEALPKKW----DTIVGN---KGMKLSGGERQRIAIARCLLKDPKIVIFDE 181
Query: 322 PTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRL--FHKFDKLILLGKGSLLYFGK 379
TS LDS T + ++D+ + +T++ H RL + +ILL KG ++ G
Sbjct: 182 ATSSLDSKTEYLFQKAVEDLRK-NRTLIIIAH----RLSTISSAESIILLNKGKIVEKGT 236
Query: 380 ASEAMA 385
+ +
Sbjct: 237 HKDLLK 242
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 117 bits (295), Expect = 2e-29
Identities = 61/194 (31%), Positives = 96/194 (49%), Gaps = 19/194 (9%)
Query: 168 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS--- 224
+ ++ L ++ +V PG+ LAL+GPSG+GK+T+L LL R + + G I + S
Sbjct: 65 DGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLF-RFYDIS-SGCIRIDGQDISQVT 122
Query: 225 -KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINEL--GLE 281
SL+S IG V QD VLF + T+ + + Y + + + + D I G
Sbjct: 123 QASLRSHIGVVPQDTVLF-NDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGY- 180
Query: 282 RCQDTMIGGSFVRGV--SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQ 339
T +G RG+ SGGE++RV I I+ P ++ LDE TS LD++ I L
Sbjct: 181 ---RTQVGE---RGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLA 234
Query: 340 DIAEAGKTVVTTIH 353
+ +T + H
Sbjct: 235 KVCA-NRTTIVVAH 247
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 118 bits (299), Expect = 1e-28
Identities = 49/236 (20%), Positives = 81/236 (34%), Gaps = 23/236 (9%)
Query: 119 KPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLKFTDVTYKVILKGMTSSEEKDILNGITG 178
F +P + + KF + + L D+ K+ + L G
Sbjct: 231 NNFLKGYLPAENMKIRPDEIKFMLKEVSDLDLSK-DLKTKMKWTKIIKKLGDFQLVVDNG 289
Query: 179 SVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDD 238
GE++ ++GP+G GKTT +L G + GS+T S K + F D
Sbjct: 290 EAKEGEIIGILGPNGIGKTTFARILVG-EITAD-EGSVTPEKQILSY--KPQRIFPNYDG 345
Query: 239 VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSG 298
T L + +V L L R + S V +SG
Sbjct: 346 ------------TVQQYLENASKDALSTSSWFFEEVTKRLNLHRLLE-----SNVNDLSG 388
Query: 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA-EAGKTVVTTIH 353
GE +++ I + L LD+P+S LD + + ++ + E H
Sbjct: 389 GELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDH 444
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 112 bits (281), Expect = 2e-26
Identities = 30/176 (17%), Positives = 72/176 (40%), Gaps = 12/176 (6%)
Query: 180 VNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK-SKIGFVTQD- 237
+L ++G +G GKTT+L +L+G ++ + K + +I ++
Sbjct: 22 PKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKEL 81
Query: 238 --DVLFPHLTVKETLTYAALLRLP--NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFV 293
+ L ++ + L+ LTK + + +V L + +
Sbjct: 82 YSNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVKELLNMTN-----LWNKDA 136
Query: 294 RGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVV 349
+SGG +R+ + ++ + D+P+S LD + + + ++++ + K V+
Sbjct: 137 NILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLK-NKYVI 191
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 110 bits (278), Expect = 2e-27
Identities = 64/240 (26%), Positives = 114/240 (47%), Gaps = 25/240 (10%)
Query: 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME 209
++ +V++ + EK L ++ +N GE L + G +GSGK+TLL +++G L+E
Sbjct: 3 IEVVNVSHIF---HRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAG-LIE 58
Query: 210 PTVGGSITYNDHPYS-KSLKSKIGFVTQ--DDVLFPHLTVKETLTYAALLRLPNTLTKQQ 266
PT G + Y+ ++ IG Q +D F V + + +A + N +
Sbjct: 59 PT-SGDVLYDGERKKGYEIRRNIGIAFQYPEDQFF-AERVFDEVAFA----VKNFYPDRD 112
Query: 267 KEKRAIDVINELGLERCQDTMIGGSFVR----GVSGGERKRVCIGNEIIINPSLLFLDEP 322
+ +GL+ SF +SGGE++RV I + I+ P +L LDEP
Sbjct: 113 PVPLVKKAMEFVGLDF-------DSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEP 165
Query: 323 TSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382
GLD ++++++ GKTV+ H + + H D++++L KG ++ G E
Sbjct: 166 LVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHV-DRVVVLEKGKKVFDGTRME 224
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 110 bits (278), Expect = 2e-27
Identities = 69/231 (29%), Positives = 107/231 (46%), Gaps = 36/231 (15%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS----KSL 227
+L G+T ++ PG+V AL+GP+GSGK+T+ LL L +PT GG + + P L
Sbjct: 34 VLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQ-NLYQPT-GGKVLLDGEPLVQYDHHYL 91
Query: 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQ-----KEKRAIDVINEL--GL 280
+++ V Q+ +LF + +E + Y L T T ++ E A D I+ G
Sbjct: 92 HTQVAAVGQEPLLF-GRSFRENIAYG----LTRTPTMEEITAVAMESGAHDFISGFPQGY 146
Query: 281 ERCQDTMIGGSFVRGV--SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQML 338
DT +G G SGG+R+ V + +I P LL LD TS LD VQ L
Sbjct: 147 ----DTEVGE---TGNQLSGGQRQAVALARALIRKPRLLILDNATSALD-AGNQLRVQRL 198
Query: 339 QDIA--EAGKTVVTTIHQPSSRL--FHKFDKLILLGKGSLLYFGKASEAMA 385
+ A +TV+ +L + ++ L +GS+ G + M
Sbjct: 199 LYESPEWASRTVLLITQ----QLSLAERAHHILFLKEGSVCEQGTHLQLME 245
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 115 bits (290), Expect = 6e-27
Identities = 71/231 (30%), Positives = 111/231 (48%), Gaps = 33/231 (14%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---- 224
E IL G+ V G+ +AL+G SG GK+T + L+ RL +P G ++ +
Sbjct: 402 EVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQ-RLYDPL-DGMVSIDGQDIRTINV 459
Query: 225 KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQ-----KEKRAIDVINEL- 278
+ L+ IG V+Q+ VLF T+ E + Y + +T + KE A D I +L
Sbjct: 460 RYLREIIGVVSQEPVLF-ATTIAENIRYG----RED-VTMDEIEKAVKEANAYDFIMKLP 513
Query: 279 -GLERCQDTMIGGSFVRGV--SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIV 335
DT++G RG SGG+++R+ I ++ NP +L LDE TS LD+ + +V
Sbjct: 514 HQF----DTLVGE---RGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESE-AVV 565
Query: 336 QMLQDIAEAGKTVVTTIHQPSS-RLFHKFDKLILLGKGSLLYFGKASEAMA 385
Q D A G+T + H+ S+ R D + G ++ G E M
Sbjct: 566 QAALDKAREGRTTIVIAHRLSTVR---NADVIAGFDGGVIVEQGNHDELMR 613
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 111 bits (279), Expect = 1e-25
Identities = 55/195 (28%), Positives = 98/195 (50%), Gaps = 27/195 (13%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS----KSL 227
+L G++ V G+ LAL+G SG GK+T++ LL R +P GS+ + + L
Sbjct: 1048 VLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLE-RFYDPM-AGSVFLDGKEIKQLNVQWL 1105
Query: 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQ-----KEKRAIDVINEL--GL 280
++++G V+Q+ +LF ++ E + Y ++ ++ KE I+ L
Sbjct: 1106 RAQLGIVSQEPILFD-CSIAENIAYG---DNSRVVSYEEIVRAAKEANIHQFIDSLPDKY 1161
Query: 281 ERCQDTMIGGSFVRGV--SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQML 338
+T +G +G SGG+++R+ I ++ P +L LDE TS LD+ + ++VQ
Sbjct: 1162 ----NTRVGD---KGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESE-KVVQEA 1213
Query: 339 QDIAEAGKTVVTTIH 353
D A G+T + H
Sbjct: 1214 LDKAREGRTCIVIAH 1228
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 106 bits (266), Expect = 8e-26
Identities = 64/247 (25%), Positives = 117/247 (47%), Gaps = 38/247 (15%)
Query: 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME 209
LK ++ Y S+ L GI ++ GEV A++G +G GK+TL +G +++
Sbjct: 8 LKVEELNY-------NYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNG-ILK 59
Query: 210 PTVGGSITYNDHPYS------KSLKSKIGFVTQ--DDVLFPHLTVKETLTYAALLRLPNT 261
P+ G I +++ P L+ IG V Q D+ LF +V + +++ N
Sbjct: 60 PS-SGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSA-SVYQDVSFG----AVNM 113
Query: 262 -LTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGV---SGGERKRVCIGNEIIINPSLL 317
L + + KR + + G+E +D + S G++KRV I +++ P +L
Sbjct: 114 KLPEDEIRKRVDNALKRTGIEHLKD--------KPTHCLSFGQKKRVAIAGVLVMEPKVL 165
Query: 318 FLDEPTSGLDSTTALRIVQMLQDI-AEAGKTVVTTIHQPSSRLFHKF-DKLILLGKGSLL 375
LDEPT+GLD I+++L ++ E G T++ H + + D + ++ +G ++
Sbjct: 166 ILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATH--DIDIVPLYCDNVFVMKEGRVI 223
Query: 376 YFGKASE 382
G E
Sbjct: 224 LQGNPKE 230
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 104 bits (262), Expect = 2e-25
Identities = 57/192 (29%), Positives = 97/192 (50%), Gaps = 27/192 (14%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLL---NLLSGRLMEPTVGGSITYNDHPYSKSLK 228
+L GI + GEV+ ++GPSGSGK+T L NLL E G I +
Sbjct: 39 VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLL-----EDFDEGEIIIDGINLKAKDT 93
Query: 229 ------SKIGFVTQDDVLFPHLTVKETLTYA--ALLRLPNTLTKQQKEKRAIDVINELGL 280
++G V Q LFPH+TV +T A + + P +++ E +A+++++++GL
Sbjct: 94 NLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWP----REKAEAKAMELLDKVGL 149
Query: 281 ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQD 340
+ ++ +SGG+ +RV I + + P ++ DEPTS LD ++ +++
Sbjct: 150 KDKAH-----AYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQ 204
Query: 341 IAEAGKT--VVT 350
+A G T VVT
Sbjct: 205 LANEGMTMVVVT 216
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 104 bits (262), Expect = 2e-25
Identities = 46/189 (24%), Positives = 79/189 (41%), Gaps = 20/189 (10%)
Query: 166 SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK 225
E+ L I VN GE + ++GP+GSGKTTLL +SG + P G+I N K
Sbjct: 14 KGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISG--LLPY-SGNIFINGMEVRK 69
Query: 226 SLKSKIGFVTQDDVLFP-HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQ 284
+++ I + T + +TV + + L K ++++ L L
Sbjct: 70 -IRNYIRYSTNLPEAYEIGVTVNDIVYLY--EEL-----KGLDRDLFLEMLKALKL---- 117
Query: 285 DTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA 344
I + +S G+ V + P ++ LDEP +D+ I + +++
Sbjct: 118 GEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEY--- 174
Query: 345 GKTVVTTIH 353
GK + H
Sbjct: 175 GKEGILVTH 183
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 103 bits (259), Expect = 6e-25
Identities = 59/199 (29%), Positives = 100/199 (50%), Gaps = 29/199 (14%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLL---NLL----SGRL--------MEPTVGGSI 216
+L G++ G+V++++G SGSGK+T L N L G + + G +
Sbjct: 21 VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQL 80
Query: 217 TYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYA--ALLRLPNTLTKQQKEKRAIDV 274
D + L++++ V Q L+ H+TV E + A +L L K +RA+
Sbjct: 81 KVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLS----KHDARERALKY 136
Query: 275 INELGL-ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALR 333
+ ++G+ ER Q + +SGG+++RV I + + P +L DEPTS LD
Sbjct: 137 LAKVGIDERAQG-----KYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGE 191
Query: 334 IVQMLQDIAEAGKT--VVT 350
+++++Q +AE GKT VVT
Sbjct: 192 VLRIMQQLAEEGKTMVVVT 210
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 103 bits (258), Expect = 4e-24
Identities = 56/187 (29%), Positives = 94/187 (50%), Gaps = 20/187 (10%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKS--- 229
LN I+ S++PGE+L ++G SG GKTTLL L+G +P G I+ + +
Sbjct: 20 LNDISLSLDPGEILFIIGASGCGKTTLLRCLAG-FEQPD-SGEISLSGKTIFSKNTNLPV 77
Query: 230 ---KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDT 286
++G++ Q+ VLFPHLTV + Y L Q+ +R ++ G+
Sbjct: 78 RERRLGYLVQEGVLFPHLTVYRNIAYG--LGNGK-GRTAQERQRIEAMLELTGISE---- 130
Query: 287 MIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGK 346
+ G + +SGG+++R + + +P L+ LDEP S LD LR Q+ +D+ A +
Sbjct: 131 -LAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALD--EQLR-RQIREDMIAALR 186
Query: 347 TV-VTTI 352
+ +
Sbjct: 187 ANGKSAV 193
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 99.5 bits (249), Expect = 7e-24
Identities = 50/178 (28%), Positives = 88/178 (49%), Gaps = 26/178 (14%)
Query: 183 GEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDH------PYSKSLKSKIGFVTQ 236
+ L+GP+G+GK+ L L++G +++P G + N P + IGFV Q
Sbjct: 24 RDYCVLLGPTGAGKSVFLELIAG-IVKPD-RGEVRLNGADITPLPPE----RRGIGFVPQ 77
Query: 237 DDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGV 296
D LFPHL+V + Y L + + ++++R ++ +LG+ D +
Sbjct: 78 DYALFPHLSVYRNIAY-GLRNVE----RVERDRRVREMAEKLGIAHLLDRKP-----ARL 127
Query: 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTV-VTTIH 353
SGGER+RV + ++I P LL LDEP S +D + +++++ + V +H
Sbjct: 128 SGGERQRVALARALVIQPRLLLLDEPLSAVDL--KTK-GVLMEELRFVQREFDVPILH 182
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 99.1 bits (248), Expect = 2e-23
Identities = 48/196 (24%), Positives = 90/196 (45%), Gaps = 30/196 (15%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKS--- 229
L+G++ SVN G+V ++GP+GSGK+TL+N+++G L + G + + + + +
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFL-KAD-EGRVYFENKDITN-KEPAEL 79
Query: 230 -KIGFV-T-QDDVLFPHLTVKE-----------TLTYAALLRLPNTLTKQQKE--KRAID 273
G V T Q +TV E + + + +++E ++A
Sbjct: 80 YHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYK---KWIPKEEEMVEKAFK 136
Query: 274 VINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALR 333
++ L L D +SGG+ K V IG ++ NP ++ +DEP +G+ A
Sbjct: 137 ILEFLKLSHLYDRK-----AGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHD 191
Query: 334 IVQMLQDIAEAGKTVV 349
I + ++ G T +
Sbjct: 192 IFNHVLELKAKGITFL 207
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 3e-23
Identities = 56/188 (29%), Positives = 89/188 (47%), Gaps = 27/188 (14%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDH------PYSKS 226
L+ ++ V GE ++GP+G+GKT L L++G P G I + P
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAG-FHVPD-SGRILLDGKDVTDLSPE--- 70
Query: 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDT 286
K I FV Q+ LFPH+ VK+ L + +R+ K + KR +D +L +E D
Sbjct: 71 -KHDIAFVYQNYSLFPHMNVKKNLEFG--MRMK----KIKDPKRVLDTARDLKIEHLLDR 123
Query: 287 MIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGK 346
+SGGE++RV + ++ NP +L LDEP S LD + + ++ K
Sbjct: 124 NP-----LTLSGGEQQRVALARALVTNPKILLLDEPLSALDP--RTQ-ENAREMLSVLHK 175
Query: 347 TV-VTTIH 353
+T +H
Sbjct: 176 KNKLTVLH 183
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 3e-23
Identities = 48/162 (29%), Positives = 82/162 (50%), Gaps = 20/162 (12%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYND------HPYSK 225
+ G++ + GE++ L+GPSGSGKTT+L L++G L PT G + P
Sbjct: 30 SVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAG-LERPT-KGDVWIGGKRVTDLPPQ-- 85
Query: 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQD 285
K +G V Q+ LF H+TV + +++ LR + K + + R +++ + LE
Sbjct: 86 --KRNVGLVFQNYALFQHMTVYDNVSFG--LREKR-VPKDEMDARVRELLRFMRLES--- 137
Query: 286 TMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLD 327
F +SGG+++RV + + P +L DEP + +D
Sbjct: 138 --YANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAID 177
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587 | Back alignment and structure |
|---|
Score = 97.6 bits (244), Expect = 1e-21
Identities = 70/269 (26%), Positives = 117/269 (43%), Gaps = 35/269 (13%)
Query: 129 DIEAGTRERPKFQTEPTLPIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLAL 188
+ + E P + + F +V ++ +L+G+ SV PG ++A+
Sbjct: 321 NEKPAIEEADNALALPNVEGSVSFENVEFRY------FENTDPVLSGVNFSVKPGSLVAV 374
Query: 189 MGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP---YS-KSLKSKIGFVTQDDVLFPHL 244
+G +GSGK+TL+NL+ RL++P G + ++ K L+ I V Q+ VLF
Sbjct: 375 LGETGSGKSTLMNLIP-RLIDPE-RGRVEVDELDVRTVKLKDLRGHISAVPQETVLF-SG 431
Query: 245 TVKETLTY----AALLRLPNTLTKQQKEKRAIDVINEL--GLERCQDTMI--GGSFVRGV 296
T+KE L + A + Q D I L G D+ + GG
Sbjct: 432 TIKENLKWGREDATDDEIVEAAKIAQ----IHDFIISLPEGY----DSRVERGGR---NF 480
Query: 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPS 356
SGG+++R+ I ++ P +L LD+ TS +D T RI+ L+ I Q
Sbjct: 481 SGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKR--YTKGCTTFIITQKI 538
Query: 357 SRLFHKFDKLILLGKGSLLYFGKASEAMA 385
DK+++L +G + FG E +
Sbjct: 539 PTALLA-DKILVLHEGKVAGFGTHKELLE 566
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 94.6 bits (236), Expect = 2e-21
Identities = 51/188 (27%), Positives = 92/188 (48%), Gaps = 21/188 (11%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYND----HPYSKSLK 228
L+ + ++ GE ++GPSG+GKTT + +++G L P+ G + ++D +
Sbjct: 21 LDNVNINIENGERFGILGPSGAGKTTFMRIIAG-LDVPS-TGELYFDDRLVASNGKLIVP 78
Query: 229 SK---IGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQD 285
+ IG V Q L+P+LT E + + L ++K++ KR +V L + +
Sbjct: 79 PEDRKIGMVFQTWALYPNLTAFENIAFP--LTNMK-MSKEEIRKRVEEVAKILDIHHVLN 135
Query: 286 TMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAG 345
R +SG +++RV + ++ +PSLL LDEP S LD+ +R + E
Sbjct: 136 HFP-----RELSGAQQQRVALARALVKDPSLLLLDEPFSNLDA--RMR-DSARALVKEVQ 187
Query: 346 KTV-VTTI 352
+ VT +
Sbjct: 188 SRLGVTLL 195
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598 | Back alignment and structure |
|---|
Score = 94.9 bits (237), Expect = 1e-20
Identities = 60/179 (33%), Positives = 89/179 (49%), Gaps = 24/179 (13%)
Query: 167 SEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK- 225
++K +L IT + PG+ +AL+GP+GSGKTT++NLL R + G I + K
Sbjct: 365 DKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLM-RFYDVD-RGQILVDGIDIRKI 422
Query: 226 ---SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQ-----KEKRAIDVINE 277
SL+S IG V QD +LF TVKE L Y T ++ K + I
Sbjct: 423 KRSSLRSSIGIVLQDTILF-STTVKENLKYGNP-----GATDEEIKEAAKLTHSDHFIKH 476
Query: 278 L--GLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRI 334
L G +T++ + +S G+R+ + I + NP +L LDE TS +D+ T I
Sbjct: 477 LPEGY----ETVLTDNGE-DLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSI 530
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 89.4 bits (223), Expect = 2e-20
Identities = 53/186 (28%), Positives = 89/186 (47%), Gaps = 23/186 (12%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS----- 226
+ GI V G+++ L+G +G+GKTT L+ ++G L+ G I +N +
Sbjct: 21 AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAG-LVRAQ-KGKIIFNGQDITNKPAHVI 78
Query: 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINE----LGLER 282
+ I V + +FP LTV E L A R ++ KR ++ I L
Sbjct: 79 NRMGIALVPEGRRIFPELTVYENLMMGAYNR-----KDKEGIKRDLEWIFSLFPRLKERL 133
Query: 283 CQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA 342
Q +GG+ +SGGE++ + IG ++ P LL +DEP+ GL + +++Q I
Sbjct: 134 KQ---LGGT----LSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKIN 186
Query: 343 EAGKTV 348
+ G T+
Sbjct: 187 QEGTTI 192
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A Length = 267 | Back alignment and structure |
|---|
Score = 88.8 bits (221), Expect = 7e-20
Identities = 59/188 (31%), Positives = 89/188 (47%), Gaps = 35/188 (18%)
Query: 168 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227
E+K IL G++ V+PGEV A+MGP+GSGK+TL L+GR GG++ + K L
Sbjct: 31 EDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKG----KDL 86
Query: 228 -------KSKIG-FVT-QDDVLFPHLTVKETLTYAALLRLPNTLTKQ--QKEKRAIDVIN 276
++ G F+ Q V P ++ + L A N + Q+ D +
Sbjct: 87 LALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTAL-----NAVRSYRGQETLDRFDFQD 141
Query: 277 ELGLERCQDTMIGGSFVR-----GVSGGERKRVCIGNEI----IINPSLLFLDEPTSGLD 327
+ E+ + + G SGGE+KR N+I ++ P L LDE SGLD
Sbjct: 142 LME-EKIALLKMPEDLLTRSVNVGFSGGEKKR----NDILQMAVLEPELCILDESDSGLD 196
Query: 328 STTALRIV 335
AL++V
Sbjct: 197 -IDALKVV 203
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Length = 250 | Back alignment and structure |
|---|
Score = 88.0 bits (219), Expect = 9e-20
Identities = 53/186 (28%), Positives = 85/186 (45%), Gaps = 35/186 (18%)
Query: 168 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227
+ + IL G+ V GEV ALMGP+G+GK+TL +L+G G I + +++
Sbjct: 14 DGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDG----ENI 69
Query: 228 -------KSKIG-FVT-QDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINEL 278
+++ G F+ Q V P +T+ L A K +E + ++
Sbjct: 70 LELSPDERARKGLFLAFQYPVEVPGVTIANFLRLAL-----Q--AKLGREVGVAEFWTKV 122
Query: 279 GLERCQDTMIGGSFVR-----GVSGGERKRVCIGNEI----IINPSLLFLDEPTSGLDST 329
+ + S++ G SGGE+KR NEI ++ P+ LDE SGLD
Sbjct: 123 K-KALELLDWDESYLSRYLNEGFSGGEKKR----NEILQLLVLEPTYAVLDETDSGLD-I 176
Query: 330 TALRIV 335
AL++V
Sbjct: 177 DALKVV 182
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 85.8 bits (213), Expect = 3e-18
Identities = 53/190 (27%), Positives = 94/190 (49%), Gaps = 18/190 (9%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK------- 225
LN ++ V G++ ++G SG+GK+TL+ ++ L PT GS+ + +
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNL-LERPT-EGSVLVDGQELTTLSESELT 101
Query: 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQD 285
+ +IG + Q L TV + L L N K + ++R ++++ +GL D
Sbjct: 102 KARRQIGMIFQHFNLLSSRTVFGNVALP--LELDN-TPKDEVKRRVTELLSLVGLGDKHD 158
Query: 286 TMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI-AEA 344
S+ +SGG+++RV I + NP +L D+ TS LD T I+++L+DI
Sbjct: 159 -----SYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRL 213
Query: 345 GKTVVTTIHQ 354
G T++ H+
Sbjct: 214 GLTILLITHE 223
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372 | Back alignment and structure |
|---|
Score = 83.4 bits (207), Expect = 1e-17
Identities = 58/189 (30%), Positives = 94/189 (49%), Gaps = 21/189 (11%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSIT-----YNDHPYSKS 226
+ ++ V GE + L+GPSG GKTT L +++G L EP+ G I D
Sbjct: 18 AVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAG-LEEPS-RGQIYIGDKLVADPEKGIF 75
Query: 227 LKSK---IGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC 283
+ K I V Q L+PH+TV + + + L+L +Q+ ++R +V LGL
Sbjct: 76 VPPKDRDIAMVFQSYALYPHMTVYDNIAFP--LKLRKV-PRQEIDQRVREVAELLGLTEL 132
Query: 284 QDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE 343
+ R +SGG+R+RV +G I+ P + +DEP S LD+ LR V+M ++ +
Sbjct: 133 LNRK-----PRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDA--KLR-VRMRAELKK 184
Query: 344 AGKTVVTTI 352
+ + T
Sbjct: 185 LQRQLGVTT 193
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 81.1 bits (201), Expect = 9e-17
Identities = 55/188 (29%), Positives = 96/188 (51%), Gaps = 25/188 (13%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVG----GSITYNDHPYSKSL 227
LN I + GE +AL+GPSGSGK+TLL ++G + +PT G + L
Sbjct: 18 ALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAG-IYKPTSGKIYFDEKDVTE------L 70
Query: 228 KSK---IGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQ 284
K +G V Q+ L+PH+TV + + + LR +++ +K+ +V L +++
Sbjct: 71 PPKDRNVGLVFQNWALYPHMTVYKNIAFPLELR---KAPREEIDKKVREVAKMLHIDKLL 127
Query: 285 DTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA 344
+ + +SGG+++RV I ++ P +L LDEP S LD+ LR +++ ++
Sbjct: 128 N-----RYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDA--LLR-LEVRAELKRL 179
Query: 345 GKTVVTTI 352
K + T
Sbjct: 180 QKELGITT 187
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 79.9 bits (198), Expect = 2e-16
Identities = 61/192 (31%), Positives = 99/192 (51%), Gaps = 33/192 (17%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITY-----NDHPYSKS 226
++G++ V GE +AL+GPSG GKTT L +L+G + +PT G I + ND P
Sbjct: 18 AVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAG-IYKPT-SGEIYFDDVLVNDIP---- 71
Query: 227 LKSK---IGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC 283
K +G V Q+ L+PH+TV E + + LR +K + EKR +++ +L ++
Sbjct: 72 --PKYREVGMVFQNYALYPHMTVFENIAFP--LRARRI-SKDEVEKRVVEIARKLLIDNL 126
Query: 284 QDTMIGGSFVR---GVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQD 340
D R +SGG+++RV + ++ P +L DEP S LD+ LR + M +
Sbjct: 127 LD--------RKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDA--NLR-MIMRAE 175
Query: 341 IAEAGKTVVTTI 352
I + + T
Sbjct: 176 IKHLQQELGITS 187
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 81.2 bits (200), Expect = 3e-16
Identities = 34/173 (19%), Positives = 67/173 (38%), Gaps = 27/173 (15%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228
K +LN + + GP+G GK+TL+ ++ ++ +
Sbjct: 447 AKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVD-----GFPTQEE------- 494
Query: 229 SKIGFVTQD-DVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTM 287
+ +V D D +V + + + + ++ D + E G D M
Sbjct: 495 CRTVYVEHDIDGTHSDTSVLDFVFESGV----------GTKEAIKDKLIEFGFT---DEM 541
Query: 288 IGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQD 340
I + +SGG + ++ + ++ N +L LDEPT+ LD+ +V L
Sbjct: 542 IAMP-ISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT 593
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 49.6 bits (118), Expect = 2e-06
Identities = 25/116 (21%), Positives = 52/116 (44%), Gaps = 9/116 (7%)
Query: 264 KQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPT 323
+ K + + LGL+ ++ S +RG+SGG++ ++ + P L+ LDEPT
Sbjct: 873 RPLTRKEIEEHCSMLGLD---PEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPT 929
Query: 324 SGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKF-DKLILLGKGSLLYFG 378
+ LD + + + L++ V+ H S+ +++ + G + G
Sbjct: 930 NYLDRDSLGALSKALKEF---EGGVIIITH--SAEFTKNLTEEVWAVKDGRMTPSG 980
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 49.6 bits (118), Expect = 2e-06
Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 9/84 (10%)
Query: 166 SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK 225
K + I + +A++GP+G+GK+TL+N+L+G L PT G H
Sbjct: 682 PGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGEL-LPTSG---EVYTHE--- 734
Query: 226 SLKSKIGFVTQDDVLFPHLTVKET 249
+I ++ Q + +T
Sbjct: 735 --NCRIAYIKQHAFAHIESHLDKT 756
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372 | Back alignment and structure |
|---|
Score = 77.7 bits (192), Expect = 1e-15
Identities = 58/188 (30%), Positives = 90/188 (47%), Gaps = 25/188 (13%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVG----GSITYNDHPYSKSL 227
+N + ++ GE L L+GPSG GKTT L +++G L EPT G G L
Sbjct: 26 AVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAG-LEEPTEGRIYFGDRDVTY------L 78
Query: 228 KSK---IGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQ 284
K I V Q ++PH+TV E + + L++ K + +KR L +E
Sbjct: 79 PPKDRNISMVFQSYAVWPHMTVYENIAFP--LKIKKF-PKDEIDKRVRWAAELLQIEELL 135
Query: 285 DTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA 344
+ +SGG+R+RV + I++ P +L +DEP S LD+ LR V M +I +
Sbjct: 136 NRY-----PAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDA--KLR-VAMRAEIKKL 187
Query: 345 GKTVVTTI 352
+ + T
Sbjct: 188 QQKLKVTT 195
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 76.7 bits (189), Expect = 3e-15
Identities = 61/310 (19%), Positives = 122/310 (39%), Gaps = 51/310 (16%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SL 227
IL I+ S++PG+ + L+G +GSGK+TLL+ RL+ G I + +
Sbjct: 36 ILENISFSISPGQRVGLLGRTGSGKSTLLSAFL-RLLNTE--GEIQIDGVSWDSITLEQW 92
Query: 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQ--- 284
+ G + Q +F T ++ L PN + I + +
Sbjct: 93 RKAFGVIPQKVFIFSG-TFRKNLD-------PN-------AAHSDQEIWK-VADEVGLRS 136
Query: 285 ---------DTMI--GGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALR 333
D ++ GG +S G ++ +C+ ++ +L LDEP++ LD T +
Sbjct: 137 VIEQFPGKLDFVLVDGGC---VLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTY-Q 192
Query: 334 IVQMLQDIAE--AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIG 391
I++ + + + A TV+ + + L + D+ +++ + + + E Y +
Sbjct: 193 IIR--RTLKQAFADCTVILCEARIEAML--ECDQFLVIEENKVRQYDSILELYHYPADRF 248
Query: 392 CSPQIAMNPAEFL-LDLANGNLHDVSVPSELQDRVQTE---NSENDTANGKPTPAIVHEY 447
+ I FL + + + V V + +R Q S + + I E+
Sbjct: 249 VAGFIGSPKMNFLPVKVTATAIDQVQVELPMPNRQQVWLPVESRDVQVGANMSLGIRPEH 308
Query: 448 LVEAYETRVA 457
L+ + V
Sbjct: 309 LLPSDIADVI 318
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A Length = 381 | Back alignment and structure |
|---|
Score = 73.7 bits (182), Expect = 3e-14
Identities = 60/181 (33%), Positives = 91/181 (50%), Gaps = 27/181 (14%)
Query: 171 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSIT-----YNDHPYSK 225
+ I ++ GE + +GPSG GK+TLL +++G +E G + ND P +
Sbjct: 17 VVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAG--LETITSGDLFIGEKRMNDTPPA- 73
Query: 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQD 285
+ +G V Q L+PHL+V E +++ L+L K+ +R V L L D
Sbjct: 74 --ERGVGMVFQSYALYPHLSVAENMSFG--LKL-AGAKKEVINQRVNQVAEVLQLAHLLD 128
Query: 286 TMIGGSFVR---GVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA 342
R +SGG+R+RV IG ++ PS+ LDEP S LD+ ALR VQM +I+
Sbjct: 129 --------RKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDA--ALR-VQMRIEIS 177
Query: 343 E 343
Sbjct: 178 R 178
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 69.3 bits (170), Expect = 3e-13
Identities = 58/236 (24%), Positives = 94/236 (39%), Gaps = 51/236 (21%)
Query: 166 SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK 225
S +L I + G++LA+ G +G+GKT+LL ++ G L G I
Sbjct: 47 SLLGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGEL--EPSEGKI--------- 95
Query: 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQD 285
+I F +Q+ + P T+KE N + E R VI LE D
Sbjct: 96 KHSGRISFCSQNSWIMP-GTIKE-----------NIIGVSYDEYRYRSVIKACQLEE--D 141
Query: 286 ---------TMIGGSFVRGV--SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALR- 333
++G G+ SGG+R R+ + + + L LD P LD T
Sbjct: 142 ISKFAEKDNIVLGE---GGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEI 198
Query: 334 ----IVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385
+ +++ A KT + + K DK+++L +GS ++G SE
Sbjct: 199 FESCVCKLM-----ANKTRILVTSKME--HLKKADKILILHEGSSYFYGTFSELQN 247
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 66.0 bits (162), Expect = 2e-12
Identities = 58/232 (25%), Positives = 90/232 (38%), Gaps = 42/232 (18%)
Query: 166 SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK 225
+L I + G++LA+ G +G+GKT+LL ++ G L G I
Sbjct: 17 EEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGEL--EPSEGKI--------- 65
Query: 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTL-TKQQKEKRAIDVINELGLERCQ 284
+I F +Q + P T+KE N + E R VI LE
Sbjct: 66 KHSGRISFCSQFSWIMP-GTIKE-----------NIIFGVSYDEYRYRSVIKACQLEE-- 111
Query: 285 D---------TMIGGSFVRGV--SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALR 333
D ++G G+ SGG+R R+ + + + L LD P LD T
Sbjct: 112 DISKFAEKDNIVLGE---GGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKE 168
Query: 334 IVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385
I + A KT + + K DK+++L +GS ++G SE
Sbjct: 169 IFESCVCKLMANKTRILVTSKME--HLKKADKILILHEGSSYFYGTFSELQN 218
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 68.3 bits (166), Expect = 4e-12
Identities = 80/533 (15%), Positives = 170/533 (31%), Gaps = 132/533 (24%)
Query: 74 RSAQLKLELDE-VSSGAALSRASSASLGLSFSFTGFTMPPDEIADSKPFSDDDIPED--- 129
+S K E+D + S A+S F +E+ + F ++ + +
Sbjct: 43 KSILSKEEIDHIIMSKDAVSG-------TLRLFWTLLSKQEEMV--QKFVEEVLRINYKF 93
Query: 130 IEAGTRERPKFQTEPTLPIYLKFTDVTY---KVILKGMTSSEEK--DILNGITGSVNPGE 184
+ + + + Q +Y++ D Y +V K S + + + + P +
Sbjct: 94 LMSPIKTEQR-QPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALL-ELRPAK 151
Query: 185 VLALMGPSGSGKTTLLN--LLSGRLMEPTVGG----SITYNDHPYS--KSLKSKIGFVTQ 236
+ + G GSGKT + LS ++ ++ + P + + L+ + +
Sbjct: 152 NVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDP 211
Query: 237 DDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAI----DV-----INELGLERCQDTM 287
+ + L ++ L K + + + +V N L C+ +
Sbjct: 212 NWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNL-SCK-IL 269
Query: 288 I---GGSFVRGVSGGERKRVCIGNEII-INP----SLL--FLDEPTSGL---DSTTALRI 334
+ +S + + + + + P SLL +LD L TT R
Sbjct: 270 LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRR 329
Query: 335 VQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIG--- 391
+ + IAE+ + + T K +I + SL + +E F +
Sbjct: 330 LSI---IAESIRDGLATWDNWKHVNCDKLTTII---ESSLNVL-EPAEYRKMFDRLSVFP 382
Query: 392 ----------------CSPQIAMNPAEFLLD--LANGNLHD--VSVPSELQDRVQTENSE 431
M L L + +S+PS + ++ + E
Sbjct: 383 PSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPS-IYLELKVKL-E 440
Query: 432 NDTANGKPTPAIVHEYLVEAYET--------------------------RVAEN-EKKKL 464
N+ A +H +V+ Y + E+ E+ L
Sbjct: 441 NEYA--------LHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTL 492
Query: 465 MAPIPLDEE-IKAKVSSPKRNWGASWIQQYTIL--------FRRGIKEHRHDY 508
+ LD ++ K+ R+ +W +IL ++ I ++ Y
Sbjct: 493 FRMVFLDFRFLEQKI----RHDSTAWNASGSILNTLQQLKFYKPYICDNDPKY 541
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 64.5 bits (158), Expect = 7e-12
Identities = 55/234 (23%), Positives = 96/234 (41%), Gaps = 44/234 (18%)
Query: 166 SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK 225
+ + LNGIT S+ G ++A++G G GK++LL+ L + V G +
Sbjct: 14 ARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEM--DKVEGHV--------- 62
Query: 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTL-TKQQKEKRAIDVINELGLERCQ 284
++K + +V Q + + +++E N L Q +E VI L
Sbjct: 63 AIKGSVAYVPQQAWIQ-NDSLRE-----------NILFGCQLEEPYYRSVIQACALLP-- 108
Query: 285 D---------TMIGGSFVRGV--SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALR 333
D T IG +GV SGG+++RV + + N + D+P S +D+
Sbjct: 109 DLEILPSGDRTEIGE---KGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKH 165
Query: 334 IVQ--MLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385
I + + KT + H S + D +I++ G + G E +A
Sbjct: 166 IFENVIGPKGMLKNKTRILVTHSMS--YLPQVDVIIVMSGGKISEMGSYQELLA 217
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339 | Back alignment and structure |
|---|
Score = 58.9 bits (142), Expect = 2e-09
Identities = 40/264 (15%), Positives = 79/264 (29%), Gaps = 21/264 (7%)
Query: 121 FSDDDIPEDIEAGTRERPKFQTEPTLPIYLKFTDVTYKVILKGMTSSEEKDILNGITGSV 180
F D I R K + + + +K + + + K I + +
Sbjct: 75 FEKDGTKYRIT---RRFLKGYSSGEIHAMKRLVGNEWKHVTEPSS----KAISAFMEKLI 127
Query: 181 NPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVL 240
L + +L R ++ + Y K + K G ++++
Sbjct: 128 PYNIFLNAIYIRQGQIDAILESDEAREKVVREVLNLDKFETAYKKLSELKGGSGGTEELI 187
Query: 241 FPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGV---- 296
K AAL ++ ++ E + + +
Sbjct: 188 EKVKKYKALAREAALSKIGELASEIFAEFTEGKYSEVVVRAEENKVRLFVVWEGKERPLT 247
Query: 297 --SGGERKRVC------IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTV 348
SGGER + + + SLL LDEPT LD +++ +++ + V
Sbjct: 248 FLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQV 307
Query: 349 VTTIHQPSSRLFHKFDKLILLGKG 372
+ H L D +I +
Sbjct: 308 ILVSHDEE--LKDAADHVIRISLE 329
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* Length = 148 | Back alignment and structure |
|---|
Score = 52.4 bits (126), Expect = 2e-08
Identities = 26/144 (18%), Positives = 48/144 (33%), Gaps = 21/144 (14%)
Query: 237 DDVLFPHLTVKETLTY-AALLRLPNTLTKQQKEKRAIDV-INELGLERCQDTMIGGSFVR 294
+ L + A + + E+ + + + G ER +
Sbjct: 8 EAAL--SKIGELASEIFAEFTEGKYSEVVVRAEENKVRLFVVWEGKERPLTFL------- 58
Query: 295 GVSGGERKRVCIGNEI------IINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTV 348
SGGER + + + SLL LDEPT LD +++ +++ + V
Sbjct: 59 --SGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQV 116
Query: 349 VTTIHQPSSRLFHKFDKLILLGKG 372
+ H L D +I +
Sbjct: 117 ILVSHDEE--LKDAADHVIRISLE 138
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 562 | |||
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 100.0 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 100.0 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 100.0 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 100.0 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 100.0 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 100.0 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 100.0 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 100.0 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 100.0 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 100.0 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 100.0 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 100.0 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 100.0 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 100.0 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 100.0 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 100.0 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 100.0 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 100.0 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 100.0 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 100.0 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 100.0 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 100.0 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 100.0 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 100.0 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 100.0 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 100.0 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 100.0 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 100.0 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 100.0 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 100.0 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 100.0 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 100.0 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 100.0 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 100.0 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 100.0 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 100.0 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 100.0 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 100.0 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 100.0 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 100.0 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 100.0 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 100.0 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 100.0 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 100.0 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 100.0 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 100.0 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 100.0 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 99.97 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 99.97 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 99.97 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 99.97 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 99.97 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 99.97 | |
| 4aby_A | 415 | DNA repair protein RECN; hydrolase, double strand | 99.97 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 99.96 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 99.94 | |
| 1e69_A | 322 | Chromosome segregation SMC protein; structural mai | 99.93 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 99.93 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 99.92 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 99.92 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 99.91 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 99.89 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 99.89 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 99.88 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 99.87 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 99.87 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 99.86 | |
| 2o5v_A | 359 | DNA replication and repair protein RECF; ABC ATPas | 99.86 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 99.85 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 99.85 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 99.85 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 99.85 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 99.84 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 99.84 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 99.84 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 99.83 | |
| 4ad8_A | 517 | DNA repair protein RECN; DNA binding protein, ATPa | 99.83 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 99.81 | |
| 2o8b_B | 1022 | DNA mismatch repair protein MSH6; DNA damage respo | 99.8 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.8 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 99.79 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.79 | |
| 3thx_A | 934 | DNA mismatch repair protein MSH2; ABC family ATPas | 99.79 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 99.78 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 99.78 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 99.78 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 99.78 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 99.77 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 99.74 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 99.74 | |
| 3thx_B | 918 | DNA mismatch repair protein MSH3; ABC family ATPas | 99.73 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 99.73 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 99.73 | |
| 1ewq_A | 765 | DNA mismatch repair protein MUTS; multiple domains | 99.72 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 99.72 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 99.71 | |
| 1wb9_A | 800 | DNA mismatch repair protein MUTS; DNA-binding, ATP | 99.7 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 99.7 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 99.69 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.67 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 99.67 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 99.65 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 99.63 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 99.62 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 99.6 | |
| 3kta_B | 173 | Chromosome segregation protein SMC; structural mai | 99.59 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 99.56 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 99.55 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 99.54 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 99.54 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 99.52 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 99.52 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 99.5 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 99.47 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 99.47 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 99.47 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 99.47 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 99.46 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 99.45 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 99.43 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 99.41 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 99.39 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 99.37 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 99.36 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 99.35 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 99.33 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 99.33 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 99.32 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 99.3 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 99.3 | |
| 3lda_A | 400 | DNA repair protein RAD51; DNA binding protein, ATP | 99.3 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 99.27 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 99.27 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 99.15 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 99.12 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 99.11 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 99.09 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 99.06 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 99.03 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 99.01 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 99.01 | |
| 2zr9_A | 349 | Protein RECA, recombinase A; recombination, RECA m | 98.94 | |
| 2ius_A | 512 | DNA translocase FTSK; nucleotide-binding, chromoso | 98.94 | |
| 2r6a_A | 454 | DNAB helicase, replicative helicase; replication, | 98.94 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 98.93 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 98.88 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 98.88 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 98.88 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.87 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 98.87 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.85 | |
| 3k1j_A | 604 | LON protease, ATP-dependent protease LON; ATP-bind | 98.83 | |
| 1qhl_A | 227 | Protein (cell division protein MUKB); SMC, chromos | 98.68 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 98.67 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 98.62 | |
| 3hr8_A | 356 | Protein RECA; alpha and beta proteins (A/B, A+B), | 98.61 | |
| 2ce7_A | 476 | Cell division protein FTSH; metalloprotease; HET: | 98.6 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 98.56 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 98.51 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 98.48 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 98.43 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 98.37 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 98.37 | |
| 4a1f_A | 338 | DNAB helicase, replicative DNA helicase; hydrolase | 98.35 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 98.33 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 98.3 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 98.3 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 98.29 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 98.28 | |
| 2dhr_A | 499 | FTSH; AAA+ protein, hexameric Zn metalloprotease, | 98.24 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 98.24 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 98.21 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 98.17 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 98.12 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 98.1 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 98.05 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 98.04 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 98.04 | |
| 1v5w_A | 343 | DMC1, meiotic recombination protein DMC1/LIM15 hom | 98.03 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 97.95 | |
| 3bh0_A | 315 | DNAB-like replicative helicase; ATPase, replicatio | 97.95 | |
| 2z43_A | 324 | DNA repair and recombination protein RADA; archaea | 97.93 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 97.92 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 97.91 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 97.87 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 97.84 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 97.78 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 97.77 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 97.7 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 97.68 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 97.65 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 97.64 | |
| 3cr8_A | 552 | Sulfate adenylyltranferase, adenylylsulfate kinase | 97.62 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 97.61 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 97.59 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 97.58 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 97.57 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 97.53 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 97.49 | |
| 3ice_A | 422 | Transcription termination factor RHO; transcriptio | 97.44 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 97.36 | |
| 1u94_A | 356 | RECA protein, recombinase A; homologous recombinat | 97.35 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 97.32 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 97.29 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 97.28 | |
| 3qks_A | 203 | DNA double-strand break repair RAD50 ATPase; RECA- | 97.26 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 97.25 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 97.22 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 97.21 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 97.21 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 97.1 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 97.09 | |
| 2i1q_A | 322 | DNA repair and recombination protein RADA; ATPase, | 97.09 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 97.08 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 97.06 | |
| 3bgw_A | 444 | DNAB-like replicative helicase; ATPase, replicatio | 97.06 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 97.04 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 97.01 | |
| 2q6t_A | 444 | DNAB replication FORK helicase; hydrolase; 2.90A { | 96.94 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 96.91 | |
| 2b8t_A | 223 | Thymidine kinase; deoxyribonucleoside kinase, zinc | 96.89 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 96.88 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 96.88 | |
| 3d8b_A | 357 | Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s | 96.87 | |
| 2qz4_A | 262 | Paraplegin; AAA+, SPG7, protease, ADP, structural | 96.83 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 96.81 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 96.8 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 96.8 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 96.77 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 96.71 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 96.68 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 96.63 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 96.61 | |
| 2ga8_A | 359 | Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn | 96.58 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 96.56 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 96.54 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 96.54 | |
| 3lxw_A | 247 | GTPase IMAP family member 1; immunity, structural | 96.53 | |
| 3cmw_A | 1706 | Protein RECA, recombinase A; homologous recombinat | 96.52 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 96.49 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 96.47 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 96.4 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 96.38 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 96.34 | |
| 1q3t_A | 236 | Cytidylate kinase; nucleotide monophosphate kinase | 96.34 | |
| 1kht_A | 192 | Adenylate kinase; phosphotransferase, signaling pr | 96.31 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 96.3 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 96.28 | |
| 2rhm_A | 193 | Putative kinase; P-loop containing nucleoside trip | 96.27 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.21 | |
| 3lw7_A | 179 | Adenylate kinase related protein (ADKA-like); AMP, | 96.19 | |
| 1xp8_A | 366 | RECA protein, recombinase A; recombination, radior | 96.18 | |
| 2r8r_A | 228 | Sensor protein; KDPD, PFAM02702, MCSG, structural | 96.17 | |
| 1q57_A | 503 | DNA primase/helicase; dntpase, DNA replication, tr | 96.16 | |
| 3r20_A | 233 | Cytidylate kinase; structural genomics, seattle st | 96.16 | |
| 3trf_A | 185 | Shikimate kinase, SK; amino acid biosynthesis, tra | 96.1 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 96.09 | |
| 1gvn_B | 287 | Zeta; postsegregational killing system, plasmid; 1 | 96.09 | |
| 2ze6_A | 253 | Isopentenyl transferase; crown GALL tumor, cytokin | 96.07 | |
| 1ex7_A | 186 | Guanylate kinase; substrate-induced FIT, domain mo | 96.07 | |
| 2jaq_A | 205 | Deoxyguanosine kinase; transferase, deoxyribonucle | 96.06 | |
| 2plr_A | 213 | DTMP kinase, probable thymidylate kinase; TMP-bind | 96.03 | |
| 1vht_A | 218 | Dephospho-COA kinase; structural genomics, transfe | 96.03 | |
| 2v54_A | 204 | DTMP kinase, thymidylate kinase; nucleotide biosyn | 96.03 | |
| 1ly1_A | 181 | Polynucleotide kinase; PNK, phosphatase, transfera | 95.98 | |
| 3iij_A | 180 | Coilin-interacting nuclear ATPase protein; alpha a | 95.96 | |
| 3vfd_A | 389 | Spastin; ATPase, microtubule severing, hydrolase; | 95.89 | |
| 2wwf_A | 212 | Thymidilate kinase, putative; transferase, malaria | 95.88 | |
| 2c95_A | 196 | Adenylate kinase 1; transferase, AP4A, nucleotide | 95.88 | |
| 1gtv_A | 214 | TMK, thymidylate kinase; transferase, transferase | 95.87 | |
| 1via_A | 175 | Shikimate kinase; structural genomics, transferase | 95.83 | |
| 1nn5_A | 215 | Similar to deoxythymidylate kinase (thymidylate K; | 95.8 | |
| 3ihw_A | 184 | Centg3; RAS, centaurin, GTPase, structural genomic | 95.8 | |
| 1uf9_A | 203 | TT1252 protein; P-loop, nucleotide binding domain, | 95.78 | |
| 1tev_A | 196 | UMP-CMP kinase; ploop, NMP binding region, LID reg | 95.78 | |
| 1nks_A | 194 | Adenylate kinase; thermophilic, transferase; HET: | 95.75 | |
| 1xx6_A | 191 | Thymidine kinase; NESG, northeast structural genom | 95.69 | |
| 3cmu_A | 2050 | Protein RECA, recombinase A; homologous recombinat | 95.66 | |
| 2bwj_A | 199 | Adenylate kinase 5; phosphoryl transfer reaction, | 95.59 | |
| 3k53_A | 271 | Ferrous iron transport protein B; GTPase fold, hel | 95.57 | |
| 1aky_A | 220 | Adenylate kinase; ATP:AMP phosphotransferase, myok | 95.55 | |
| 2vli_A | 183 | Antibiotic resistance protein; transferase, tunica | 95.54 | |
| 2z0h_A | 197 | DTMP kinase, thymidylate kinase; ATP-binding, nucl | 95.46 | |
| 2ged_A | 193 | SR-beta, signal recognition particle receptor beta | 95.41 | |
| 1ko7_A | 314 | HPR kinase/phosphatase; protein kinase, phosphotra | 95.4 | |
| 3cmw_A | 1706 | Protein RECA, recombinase A; homologous recombinat | 95.37 | |
| 1xjc_A | 169 | MOBB protein homolog; structural genomics, midwest | 95.37 | |
| 1zd8_A | 227 | GTP:AMP phosphotransferase mitochondrial; ATP:AMP | 95.35 | |
| 3co5_A | 143 | Putative two-component system transcriptional RES | 95.32 | |
| 1z2a_A | 168 | RAS-related protein RAB-23; RAB GTPase, vesicular | 95.32 | |
| 2nzj_A | 175 | GTP-binding protein REM 1; GDP/GTP binding, GTP hy | 95.31 | |
| 2cdn_A | 201 | Adenylate kinase; phosphoryl transfer, associative | 95.3 | |
| 3fb4_A | 216 | Adenylate kinase; psychrophIle, phosphotransferase | 95.27 | |
| 2erx_A | 172 | GTP-binding protein DI-RAS2; GTP hydrolysis, trans | 95.27 | |
| 3ake_A | 208 | Cytidylate kinase; CMP kinase, CMP complex, open c | 95.25 | |
| 3q72_A | 166 | GTP-binding protein RAD; G-domain, CAV2 beta, sign | 95.24 | |
| 1kao_A | 167 | RAP2A; GTP-binding protein, small G protein, GDP, | 95.23 | |
| 2pbr_A | 195 | DTMP kinase, thymidylate kinase; transferase, nucl | 95.23 | |
| 1u8z_A | 168 | RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH | 95.19 | |
| 2dyk_A | 161 | GTP-binding protein; GTPase, ribosome-binding prot | 95.18 | |
| 2ce2_X | 166 | GTPase HRAS; signaling protein, guanine nucleotide | 95.18 | |
| 1zak_A | 222 | Adenylate kinase; ATP:AMP-phosphotransferase, tran | 95.18 | |
| 3q85_A | 169 | GTP-binding protein REM 2; G-domain, CAV2 beta, si | 95.17 | |
| 1ukz_A | 203 | Uridylate kinase; transferase; HET: ADP AMP; 1.90A | 95.17 | |
| 1e6c_A | 173 | Shikimate kinase; phosphoryl transfer, ADP, shikim | 95.15 | |
| 3a4m_A | 260 | L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m | 95.15 | |
| 1qf9_A | 194 | UMP/CMP kinase, protein (uridylmonophosphate/cytid | 95.14 | |
| 1z0j_A | 170 | RAB-22, RAS-related protein RAB-22A; RAB GTPase, R | 95.14 | |
| 1zuh_A | 168 | Shikimate kinase; alpha-beta protein, transferase; | 95.12 | |
| 3dl0_A | 216 | Adenylate kinase; phosphotransferase, zinc coordin | 95.12 | |
| 3tw8_B | 181 | RAS-related protein RAB-35; longin domain, RAB GTP | 95.1 | |
| 1ek0_A | 170 | Protein (GTP-binding protein YPT51); vesicular tra | 95.1 | |
| 2pt5_A | 168 | Shikimate kinase, SK; aromatic amino acid biosynth | 95.1 | |
| 1z08_A | 170 | RAS-related protein RAB-21; RAB GTPase, vesicular | 95.1 | |
| 3b1v_A | 272 | Ferrous iron uptake transporter protein B; G prote | 95.1 | |
| 4ag6_A | 392 | VIRB4 ATPase, type IV secretory pathway VIRB4 comp | 95.09 | |
| 1ky3_A | 182 | GTP-binding protein YPT7P; vesicular traffic, GTP | 95.07 | |
| 1c1y_A | 167 | RAS-related protein RAP-1A; GTP-binding proteins, | 95.06 | |
| 1wms_A | 177 | RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p | 95.06 | |
| 1g16_A | 170 | RAS-related protein SEC4; G protein RAB, signaling | 95.06 | |
| 2lkc_A | 178 | Translation initiation factor IF-2; NMR {Geobacill | 95.04 | |
| 2iyv_A | 184 | Shikimate kinase, SK; transferase, aromatic amino | 95.03 | |
| 1fzq_A | 181 | ADP-ribosylation factor-like protein 3; protein-GD | 95.0 | |
| 1svi_A | 195 | GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro | 94.96 | |
| 3tlx_A | 243 | Adenylate kinase 2; structural genomics, structura | 94.94 | |
| 3pqc_A | 195 | Probable GTP-binding protein ENGB; rossmann fold, | 94.93 | |
| 2fn4_A | 181 | P23, RAS-related protein R-RAS; GDP/GTP binding, G | 94.93 | |
| 3clv_A | 208 | RAB5 protein, putative; malaria, GTPase, structura | 94.91 | |
| 3t1o_A | 198 | Gliding protein MGLA; G domain containing protein, | 94.9 | |
| 1r2q_A | 170 | RAS-related protein RAB-5A; GTPase, GNP, atomic re | 94.9 | |
| 4dsu_A | 189 | GTPase KRAS, isoform 2B; small G-protein, signalin | 94.88 | |
| 2hxs_A | 178 | RAB-26, RAS-related protein RAB-28; GTPase, signal | 94.85 | |
| 2cxx_A | 190 | Probable GTP-binding protein ENGB; structural geno | 94.84 | |
| 3bc1_A | 195 | RAS-related protein RAB-27A; RAB27, GTPase, RAB, s | 94.84 | |
| 1upt_A | 171 | ARL1, ADP-ribosylation factor-like protein 1; hydr | 94.81 | |
| 2oil_A | 193 | CATX-8, RAS-related protein RAB-25; G-protein, GDP | 94.8 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 94.79 | |
| 1jal_A | 363 | YCHF protein; nucleotide-binding fold, structural | 94.79 | |
| 1r8s_A | 164 | ADP-ribosylation factor 1; protein transport/excha | 94.75 | |
| 3a8t_A | 339 | Adenylate isopentenyltransferase; rossmann fold pr | 94.73 | |
| 1uj2_A | 252 | Uridine-cytidine kinase 2; alpha/beta mononucleoti | 94.7 | |
| 2y8e_A | 179 | RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti | 94.68 | |
| 2a9k_A | 187 | RAS-related protein RAL-A; bacterial ADP-ribosyltr | 94.68 | |
| 2g6b_A | 180 | RAS-related protein RAB-26; G-protein, GTP analogu | 94.68 | |
| 1moz_A | 183 | ARL1, ADP-ribosylation factor-like protein 1; GTP- | 94.66 | |
| 1z0f_A | 179 | RAB14, member RAS oncogene family; RAB GTPase, ves | 94.65 | |
| 2xb4_A | 223 | Adenylate kinase; ATP-binding, nucleotide-binding, | 94.61 | |
| 2grj_A | 192 | Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp | 94.6 | |
| 2efe_B | 181 | Small GTP-binding protein-like; GEF, GTPase, VPS9, | 94.59 | |
| 1jbk_A | 195 | CLPB protein; beta barrel, chaperone; 1.80A {Esche | 94.59 | |
| 2orv_A | 234 | Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2 | 94.58 | |
| 3be4_A | 217 | Adenylate kinase; malaria, cryptosporidium parvum | 94.56 | |
| 3con_A | 190 | GTPase NRAS; structural genomics consortium, SGC, | 94.56 | |
| 4fcw_A | 311 | Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 | 94.52 | |
| 1nrj_B | 218 | SR-beta, signal recognition particle receptor beta | 94.51 | |
| 2qmh_A | 205 | HPR kinase/phosphorylase; V267F mutation, ATP-bind | 94.51 | |
| 2bov_A | 206 | RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, | 94.47 | |
| 2bme_A | 186 | RAB4A, RAS-related protein RAB4A; GTP-binding prot | 94.46 | |
| 3iby_A | 256 | Ferrous iron transport protein B; G protein, G dom | 94.45 | |
| 1wf3_A | 301 | GTP-binding protein; GTPase, riken structural geno | 94.45 | |
| 1vg8_A | 207 | RAS-related protein RAB-7; GTP-binding protein, pr | 94.44 | |
| 3tkl_A | 196 | RAS-related protein RAB-1A; vesicle trafficking, p | 94.42 | |
| 3t5d_A | 274 | Septin-7; GTP-binding protein, cytoskeleton, signa | 94.42 | |
| 2gf9_A | 189 | RAS-related protein RAB-3D; G-protein, structural | 94.42 | |
| 1ksh_A | 186 | ARF-like protein 2; small GTPase, small GTP-bindin | 94.4 | |
| 2f6r_A | 281 | COA synthase, bifunctional coenzyme A synthase; 18 | 94.38 | |
| 3cbq_A | 195 | GTP-binding protein REM 2; FLJ38964A, structural g | 94.38 | |
| 1e4v_A | 214 | Adenylate kinase; transferase(phosphotransferase); | 94.37 | |
| 2gf0_A | 199 | GTP-binding protein DI-RAS1; GDP/GTP binding, GTP | 94.37 | |
| 3kkq_A | 183 | RAS-related protein M-RAS; GTP-binding, GTPase, si | 94.34 | |
| 4edh_A | 213 | DTMP kinase, thymidylate kinase; structural genomi | 94.33 | |
| 1m7b_A | 184 | RND3/RHOE small GTP-binding protein; small GTPase, | 94.33 | |
| 1mh1_A | 186 | RAC1; GTP-binding, GTPase, small G-protein, RHO fa | 94.33 | |
| 3iev_A | 308 | GTP-binding protein ERA; ERA, GTPase, KH domain, a | 94.32 | |
| 3v9p_A | 227 | DTMP kinase, thymidylate kinase; ssgcid, STRU geno | 94.32 | |
| 1ltq_A | 301 | Polynucleotide kinase; phosphatase, alpha/beta, P- | 94.32 | |
| 3umf_A | 217 | Adenylate kinase; rossmann fold, transferase; 2.05 | 94.3 | |
| 2fg5_A | 192 | RAB-22B, RAS-related protein RAB-31; G-protein, GT | 94.29 | |
| 1zbd_A | 203 | Rabphilin-3A; G protein, effector, RABCDR, synapti | 94.28 | |
| 2dby_A | 368 | GTP-binding protein; GDP, structural genomics, NPP | 94.28 | |
| 2xtp_A | 260 | GTPase IMAP family member 2; immune system, G prot | 94.28 | |
| 1a7j_A | 290 | Phosphoribulokinase; transferase, calvin cycle; 2. | 94.26 | |
| 1ak2_A | 233 | Adenylate kinase isoenzyme-2; nucleoside monophosp | 94.25 | |
| 3bwd_D | 182 | RAC-like GTP-binding protein ARAC6; G domain, cyto | 94.24 | |
| 1z06_A | 189 | RAS-related protein RAB-33B; RAB GTPase, RAB33B GT | 94.22 | |
| 2wsm_A | 221 | Hydrogenase expression/formation protein (HYPB); m | 94.2 | |
| 3a1s_A | 258 | Iron(II) transport protein B; FEOB, iron transport | 94.17 | |
| 3llu_A | 196 | RAS-related GTP-binding protein C; structural geno | 94.16 | |
| 2cjw_A | 192 | GTP-binding protein GEM; nucleotide-binding, small | 94.16 | |
| 2a5j_A | 191 | RAS-related protein RAB-2B; GTPase, signal transdu | 94.14 | |
| 2il1_A | 192 | RAB12; G-protein, GDP, GTPase, predicted, structur | 94.14 | |
| 3oes_A | 201 | GTPase rhebl1; small GTPase, structural genomics, | 94.14 | |
| 4dhe_A | 223 | Probable GTP-binding protein ENGB; melioidosis, RA | 94.13 | |
| 3t5g_A | 181 | GTP-binding protein RHEB; immunoglobulin-like beta | 94.12 | |
| 1x3s_A | 195 | RAS-related protein RAB-18; GTPase, GNP, structura | 94.11 | |
| 3dz8_A | 191 | RAS-related protein RAB-3B; GDP, GTPase, structura | 94.09 | |
| 2j9r_A | 214 | Thymidine kinase; TK1, DNK, lasso, transferase, AT | 94.07 | |
| 3zvl_A | 416 | Bifunctional polynucleotide phosphatase/kinase; hy | 94.06 | |
| 1zd9_A | 188 | ADP-ribosylation factor-like 10B; transport protei | 94.06 | |
| 3cph_A | 213 | RAS-related protein SEC4; RAB GTPase, prenylation, | 94.06 | |
| 2atv_A | 196 | RERG, RAS-like estrogen-regulated growth inhibitor | 94.05 | |
| 3i8s_A | 274 | Ferrous iron transport protein B; GTPase, GPCR, ir | 94.04 | |
| 2bcg_Y | 206 | Protein YP2, GTP-binding protein YPT1; RABGTPase, | 94.03 | |
| 2o52_A | 200 | RAS-related protein RAB-4B; G-protein, GDP, struct | 94.03 | |
| 3reg_A | 194 | RHO-like small GTPase; cytoskeleton, nucleotide-bi | 94.03 | |
| 2qu8_A | 228 | Putative nucleolar GTP-binding protein 1; GTPase, | 94.02 | |
| 1jwy_B | 315 | Dynamin A GTPase domain; dynamin, GTPase, GDP, myo | 94.02 | |
| 4bas_A | 199 | ADP-ribosylation factor, putative (small GTPase, p | 94.02 | |
| 1zj6_A | 187 | ADP-ribosylation factor-like protein 5; ARL, GTP-b | 94.02 | |
| 2p5s_A | 199 | RAS and EF-hand domain containing; G-protein, RAB, | 93.99 | |
| 2h57_A | 190 | ADP-ribosylation factor-like protein 6; GTP, GTPas | 93.99 | |
| 2p65_A | 187 | Hypothetical protein PF08_0063; CLPB, malaria, str | 93.98 | |
| 2f7s_A | 217 | C25KG, RAS-related protein RAB-27B; G-protein, str | 93.98 | |
| 2zts_A | 251 | Putative uncharacterized protein PH0186; KAIC like | 93.94 | |
| 2iwr_A | 178 | Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi | 93.92 | |
| 3lv8_A | 236 | DTMP kinase, thymidylate kinase; structural genomi | 93.92 | |
| 2h17_A | 181 | ADP-ribosylation factor-like protein 5A; GDP, GTPa | 93.9 | |
| 2ew1_A | 201 | RAS-related protein RAB-30; G-protein, GTP analogu | 93.9 | |
| 2q3h_A | 201 | RAS homolog gene family, member U; GTPase, structu | 93.84 | |
| 2fv8_A | 207 | H6, RHO-related GTP-binding protein RHOB; GDP/GTP | 93.82 | |
| 3d3q_A | 340 | TRNA delta(2)-isopentenylpyrophosphate transferase | 93.8 | |
| 3c5c_A | 187 | RAS-like protein 12; GDP, GTPase, structural genom | 93.77 | |
| 4tmk_A | 213 | Protein (thymidylate kinase); ATP:DTMP phosphotran | 93.76 | |
| 3sr0_A | 206 | Adenylate kinase; phosphoryl transfer analogue, AL | 93.76 | |
| 3exa_A | 322 | TRNA delta(2)-isopentenylpyrophosphate transferase | 93.72 | |
| 2fh5_B | 214 | SR-beta, signal recognition particle receptor beta | 93.71 | |
| 2j1l_A | 214 | RHO-related GTP-binding protein RHOD; GTPase, memb | 93.7 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 93.7 | |
| 1gwn_A | 205 | RHO-related GTP-binding protein RHOE; GTPase, inac | 93.67 | |
| 2ocp_A | 241 | DGK, deoxyguanosine kinase; protein-nucleotide com | 93.65 | |
| 2fu5_C | 183 | RAS-related protein RAB-8A; MSS4:RAB8 protein comp | 93.63 | |
| 3ld9_A | 223 | DTMP kinase, thymidylate kinase; ssgcid, NIH, niai | 93.63 | |
| 3tmk_A | 216 | Thymidylate kinase; phosphotransferase; HET: T5A; | 93.63 | |
| 2aka_B | 299 | Dynamin-1; fusion protein, GTPase domain, myosin, | 93.63 | |
| 2h92_A | 219 | Cytidylate kinase; rossmann fold, transferase; HET | 93.61 | |
| 1p5z_B | 263 | DCK, deoxycytidine kinase; nucleoside kinase, P-lo | 93.56 | |
| 2gco_A | 201 | H9, RHO-related GTP-binding protein RHOC; GTPase,s | 93.52 | |
| 2b6h_A | 192 | ADP-ribosylation factor 5; membrane trafficking, G | 93.51 | |
| 3crm_A | 323 | TRNA delta(2)-isopentenylpyrophosphate transferase | 93.51 | |
| 2atx_A | 194 | Small GTP binding protein TC10; GTPase, P-loop, al | 93.39 | |
| 3pxi_A | 758 | Negative regulator of genetic competence CLPC/MEC; | 93.38 | |
| 3def_A | 262 | T7I23.11 protein; chloroplast, TOC33, GTPase, hydr | 93.32 | |
| 1h65_A | 270 | Chloroplast outer envelope protein OEP34; GTPase, | 93.3 | |
| 1sky_E | 473 | F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp | 93.29 | |
| 2hf9_A | 226 | Probable hydrogenase nickel incorporation protein | 93.27 | |
| 2g3y_A | 211 | GTP-binding protein GEM; small GTPase, GDP, inacti | 93.26 | |
| 3cmu_A | 2050 | Protein RECA, recombinase A; homologous recombinat | 93.15 | |
| 4djt_A | 218 | GTP-binding nuclear protein GSP1; structural genom | 93.1 | |
| 3cpj_B | 223 | GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl | 93.07 | |
| 2hup_A | 201 | RAS-related protein RAB-43; G-protein, GDP, struct | 93.05 | |
| 3foz_A | 316 | TRNA delta(2)-isopentenylpyrophosphate transferas; | 92.97 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 92.96 | |
| 2x77_A | 189 | ADP-ribosylation factor; GTP-binding protein, smal | 92.96 | |
| 3tqf_A | 181 | HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co | 92.91 | |
| 2r62_A | 268 | Cell division protease FTSH homolog; ATPase domain | 92.89 | |
| 2yc2_C | 208 | IFT27, small RAB-related GTPase; transport protein | 92.88 | |
| 4gzl_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 92.81 | |
| 3cnl_A | 262 | YLQF, putative uncharacterized protein; circular p | 92.75 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 92.73 | |
| 3q3j_B | 214 | RHO-related GTP-binding protein RHO6; RAS-binding | 92.73 | |
| 2j0v_A | 212 | RAC-like GTP-binding protein ARAC7; nucleotide-bin | 92.65 | |
| 3eph_A | 409 | TRNA isopentenyltransferase; transferase, alternat | 92.48 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 92.48 | |
| 2chg_A | 226 | Replication factor C small subunit; DNA-binding pr | 92.48 | |
| 3n70_A | 145 | Transport activator; sigma-54, ntpase, PSI, MCSG, | 92.4 | |
| 2orw_A | 184 | Thymidine kinase; TMTK, TP4A, transferase; HET: 4T | 92.38 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 92.37 | |
| 2vhj_A | 331 | Ntpase P4, P4; non- hydrolysable ATP analogue, hyd | 92.35 | |
| 3syl_A | 309 | Protein CBBX; photosynthesis, rubisco activase, AA | 92.34 | |
| 1sxj_D | 353 | Activator 1 41 kDa subunit; clamp loader, processi | 92.21 | |
| 3r7w_A | 307 | Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT | 91.96 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 91.84 | |
| 1d2n_A | 272 | N-ethylmaleimide-sensitive fusion protein; hexamer | 91.77 | |
| 1xwi_A | 322 | SKD1 protein; VPS4B, AAA ATPase, protein transport | 91.75 | |
| 3gmt_A | 230 | Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle | 91.7 | |
| 4hlc_A | 205 | DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri | 91.64 | |
| 3uk6_A | 368 | RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding | 91.52 | |
| 3p32_A | 355 | Probable GTPase RV1496/MT1543; structural genomics | 91.51 | |
| 2x2e_A | 353 | Dynamin-1; nitration, hydrolase, membrane fission, | 91.51 | |
| 2hjg_A | 436 | GTP-binding protein ENGA; GTPase ENGA KH-domain, h | 91.47 | |
| 3t15_A | 293 | Ribulose bisphosphate carboxylase/oxygenase activ | 91.43 | |
| 3th5_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 90.74 | |
| 1puj_A | 282 | YLQF, conserved hypothetical protein YLQF; structu | 91.36 | |
| 1ofh_A | 310 | ATP-dependent HSL protease ATP-binding subunit HSL | 91.31 | |
| 3gj0_A | 221 | GTP-binding nuclear protein RAN; G protein, GDP, a | 91.24 | |
| 3eie_A | 322 | Vacuolar protein sorting-associated protein 4; AAA | 91.24 | |
| 3hws_A | 363 | ATP-dependent CLP protease ATP-binding subunit CL; | 91.16 | |
| 1wxq_A | 397 | GTP-binding protein; structural genomics, riken st | 91.12 | |
| 2qgz_A | 308 | Helicase loader, putative primosome component; str | 91.12 | |
| 3geh_A | 462 | MNME, tRNA modification GTPase MNME; G protein, U3 | 90.98 |
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-51 Score=430.68 Aligned_cols=222 Identities=24% Similarity=0.402 Sum_probs=195.8
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh--
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~-- 225 (562)
.+|+++||+++|..+ .....+|+||||+|++||+++|+||||||||||+|+|+|.+. +++|+|.++|+++..
T Consensus 23 ~mi~v~~ls~~y~~~----~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~--p~~G~I~i~G~~i~~~~ 96 (366)
T 3tui_C 23 HMIKLSNITKVFHQG----TRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER--PTEGSVLVDGQELTTLS 96 (366)
T ss_dssp CCEEEEEEEEEEECS----SSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECSSCC
T ss_pred ceEEEEeEEEEeCCC----CCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCC--CCceEEEECCEECCcCC
Confidence 379999999999421 123579999999999999999999999999999999999543 568999999999852
Q ss_pred -----hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhH
Q 008534 226 -----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGE 300 (562)
Q Consensus 226 -----~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGq 300 (562)
.+|+.||||||++.+|+.+||+||+.|+.... ..++.+..+++.++++.+||.+..+. ++.+|||||
T Consensus 97 ~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~---~~~~~~~~~~v~~lL~~vgL~~~~~~-----~~~~LSGGq 168 (366)
T 3tui_C 97 ESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEVKRRVTELLSLVGLGDKHDS-----YPSNLSGGQ 168 (366)
T ss_dssp HHHHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHTCGGGTTC-----CTTTSCHHH
T ss_pred HHHHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhcC-----ChhhCCHHH
Confidence 24678999999999999999999999987654 24566677889999999999877665 457999999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecC
Q 008534 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (562)
Q Consensus 301 rqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (562)
||||+|||||+.+|+||||||||+|||+.++..|++.|+++.++ |+|||+|||++. .+..+||+|++|++|++++.|+
T Consensus 169 kQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~-~~~~~aDrv~vl~~G~iv~~g~ 247 (366)
T 3tui_C 169 KQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMD-VVKRICDCVAVISNGELIEQDT 247 (366)
T ss_dssp HHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHH-HHHHHCSEEEEEETTEEEECCB
T ss_pred HHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEEcC
Confidence 99999999999999999999999999999999999999999754 999999999975 4778999999999999999999
Q ss_pred hHHHH
Q 008534 380 ASEAM 384 (562)
Q Consensus 380 ~~el~ 384 (562)
+++++
T Consensus 248 ~~ev~ 252 (366)
T 3tui_C 248 VSEVF 252 (366)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99875
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-51 Score=405.60 Aligned_cols=222 Identities=29% Similarity=0.450 Sum_probs=187.9
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
+|+++||+++|... ...+++|+||||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++..
T Consensus 1 ~l~~~~l~~~y~~~----~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~~~~~~~ 74 (235)
T 3tif_A 1 MVKLKNVTKTYKMG----EEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK--PTEGEVYIDNIKTNDLDD 74 (235)
T ss_dssp CEEEEEEEEEEEET----TEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECTTCCH
T ss_pred CEEEEEEEEEeCCC----CcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCceEEEECCEEcccCCH
Confidence 37899999999421 113579999999999999999999999999999999999553 568999999998752
Q ss_pred -h---c-cCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccc-cccccCcccCCCChh
Q 008534 226 -S---L-KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQ-DTMIGGSFVRGVSGG 299 (562)
Q Consensus 226 -~---~-~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-~t~vg~~~~~~LSGG 299 (562)
. . ++.||||+|++.+|+.+||+||+.++...+........+..+++.++++.++|.+.. +. ++.+||||
T Consensus 75 ~~~~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~~LSgG 149 (235)
T 3tif_A 75 DELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANH-----KPNQLSGG 149 (235)
T ss_dssp HHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTC-----CGGGSCHH
T ss_pred HHHHHHhhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhC-----ChhhCCHH
Confidence 1 1 346999999999999999999999986543222334566677888999999997643 44 45789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEec
Q 008534 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (562)
Q Consensus 300 qrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G 378 (562)
|||||+|||||+.+|+||||||||+|||+.++..+++.|++++++ |+|||++||++. +..+||+|++|++|++++.+
T Consensus 150 q~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~--~~~~~d~i~~l~~G~i~~~~ 227 (235)
T 3tif_A 150 QQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN--VARFGERIIYLKDGEVEREE 227 (235)
T ss_dssp HHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH--HHTTSSEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHH--HHHhCCEEEEEECCEEEEEc
Confidence 999999999999999999999999999999999999999999765 999999999975 45899999999999999999
Q ss_pred ChHHH
Q 008534 379 KASEA 383 (562)
Q Consensus 379 ~~~el 383 (562)
+.+++
T Consensus 228 ~~~~~ 232 (235)
T 3tif_A 228 KLRGF 232 (235)
T ss_dssp ECC--
T ss_pred Chhhh
Confidence 88764
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-51 Score=413.55 Aligned_cols=218 Identities=29% Similarity=0.536 Sum_probs=190.9
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCC--h-
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS--K- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~--~- 225 (562)
.|+++||+|+|. ..+.+|+||||+|++||+++|+||||||||||+|+|+|.+. +.+|+|.++|+++. .
T Consensus 7 ~l~i~~ls~~y~-------~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~--p~~G~I~~~G~~i~~~~~ 77 (275)
T 3gfo_A 7 ILKVEELNYNYS-------DGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILK--PSSGRILFDNKPIDYSRK 77 (275)
T ss_dssp EEEEEEEEEECT-------TSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEECCCSHH
T ss_pred EEEEEEEEEEEC-------CCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCCeEEEECCEECCcccc
Confidence 699999999982 23459999999999999999999999999999999999653 56899999999983 1
Q ss_pred ---hccCcEEEEccCC--CCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhH
Q 008534 226 ---SLKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGE 300 (562)
Q Consensus 226 ---~~~~~igyV~Q~~--~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGq 300 (562)
.+++.||||||++ .+| .+||+||+.|+.... ..+..+..+++.++++.+||.+..+.. +.+|||||
T Consensus 78 ~~~~~~~~ig~v~Q~~~~~~~-~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~-----~~~LSgGq 148 (275)
T 3gfo_A 78 GIMKLRESIGIVFQDPDNQLF-SASVYQDVSFGAVNM---KLPEDEIRKRVDNALKRTGIEHLKDKP-----THCLSFGQ 148 (275)
T ss_dssp HHHHHHHSEEEECSSGGGTCC-SSBHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHTTCGGGTTSB-----GGGSCHHH
T ss_pred cHHHHhCcEEEEEcCcccccc-cCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCC-----cccCCHHH
Confidence 3567899999997 345 689999999987543 345666677899999999998776654 56899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-HCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecC
Q 008534 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA-EAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (562)
Q Consensus 301 rqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~-~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (562)
||||+|||||+.+|+||||||||+|||+.++..+++.|++++ ++|+|||++||++.. +..+||+|++|++|++++.|+
T Consensus 149 kQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~-~~~~~drv~~l~~G~i~~~g~ 227 (275)
T 3gfo_A 149 KKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDI-VPLYCDNVFVMKEGRVILQGN 227 (275)
T ss_dssp HHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSS-GGGGCSEEEEEETTEEEEEEC
T ss_pred HHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHH-HHHhCCEEEEEECCEEEEECC
Confidence 999999999999999999999999999999999999999997 569999999999875 668899999999999999999
Q ss_pred hHHHHH
Q 008534 380 ASEAMA 385 (562)
Q Consensus 380 ~~el~~ 385 (562)
++++..
T Consensus 228 ~~~~~~ 233 (275)
T 3gfo_A 228 PKEVFA 233 (275)
T ss_dssp HHHHTH
T ss_pred HHHHhc
Confidence 998754
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-51 Score=429.38 Aligned_cols=218 Identities=28% Similarity=0.478 Sum_probs=195.7
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh--h
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--S 226 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--~ 226 (562)
.|+++||+++| +++.+|+||||+|++||+++|+||||||||||||+|+|... +++|+|.++|+++.. .
T Consensus 3 ~l~~~~l~~~y--------g~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~--p~~G~I~i~G~~~~~~~~ 72 (381)
T 3rlf_A 3 SVQLQNVTKAW--------GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET--ITSGDLFIGEKRMNDTPP 72 (381)
T ss_dssp CEEEEEEEEEE--------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTCCG
T ss_pred EEEEEeEEEEE--------CCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCC--CCCeEEEECCEECCCCCH
Confidence 48999999998 35679999999999999999999999999999999999543 568999999999853 3
Q ss_pred ccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHH
Q 008534 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (562)
Q Consensus 227 ~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~I 306 (562)
.++.||||||++.+||++||+|||.|+...+ ..++++.++++.++++.++|.+..+. ++.+|||||||||+|
T Consensus 73 ~~r~ig~VfQ~~~l~p~ltV~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r-----~p~~LSGGqrQRVai 144 (381)
T 3rlf_A 73 AERGVGMVFQSYALYPHLSVAENMSFGLKLA---GAKKEVINQRVNQVAEVLQLAHLLDR-----KPKALSGGQRQRVAI 144 (381)
T ss_dssp GGSCEEEECTTCCCCTTSCHHHHHTHHHHHT---TCCHHHHHHHHHHHHHHTTCGGGTTC-----CGGGSCHHHHHHHHH
T ss_pred HHCCEEEEecCCcCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcC-----ChhHCCHHHHHHHHH
Confidence 4577999999999999999999999987654 34566777889999999999877665 457899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHHH
Q 008534 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (562)
Q Consensus 307 AraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~~ 385 (562)
||||+.+|+||||||||++||+..+.++++.|+++.++ |+|+|++||++. ++..+||||++|++|++++.|+++++..
T Consensus 145 ArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~~aDri~vl~~G~i~~~g~~~~l~~ 223 (381)
T 3rlf_A 145 GRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDAGRVAQVGKPLELYH 223 (381)
T ss_dssp HHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH-HHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEEeCHHHHHh
Confidence 99999999999999999999999999999999999765 999999999975 5788999999999999999999999853
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-50 Score=410.30 Aligned_cols=217 Identities=28% Similarity=0.463 Sum_probs=190.3
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
+|+++||+++| +++++|+||||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++..
T Consensus 6 ~l~i~~l~~~y--------~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~--p~~G~i~~~g~~~~~~~~ 75 (262)
T 1b0u_A 6 KLHVIDLHKRY--------GGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK--PSEGAIIVNGQNINLVRD 75 (262)
T ss_dssp CEEEEEEEEEE--------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEECCEEEC
T ss_pred eEEEeeEEEEE--------CCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEcccccc
Confidence 59999999998 24579999999999999999999999999999999999653 568999999998751
Q ss_pred --------------hccCcEEEEccCCCCCCCCCHHHHHHHHH-hhCCCCCccHHHHHHHHHHHHHHcCCCcc-cccccc
Q 008534 226 --------------SLKSKIGFVTQDDVLFPHLTVKETLTYAA-LLRLPNTLTKQQKEKRAIDVINELGLERC-QDTMIG 289 (562)
Q Consensus 226 --------------~~~~~igyV~Q~~~l~~~lTV~enl~~~~-~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~t~vg 289 (562)
.+++.||||+|++.+|+.+||+||+.++. ... .....+..+++.++++.+||.+. .+..
T Consensus 76 ~~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-- 150 (262)
T 1b0u_A 76 KDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL---GLSKHDARERALKYLAKVGIDERAQGKY-- 150 (262)
T ss_dssp TTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTT---CCCHHHHHHHHHHHHHHTTCCHHHHTSC--
T ss_pred ccccccccChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhc---CCCHHHHHHHHHHHHHHcCCCchhhcCC--
Confidence 24567999999999999999999999864 222 22344556678899999999876 6654
Q ss_pred CcccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEE
Q 008534 290 GSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL 369 (562)
Q Consensus 290 ~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL 369 (562)
+.+|||||||||+|||||+.+|+||||||||+|||+.++..+++.|++++++|+|||++||++. .+..+||+|++|
T Consensus 151 ---~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d~v~~l 226 (262)
T 1b0u_A 151 ---PVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSSHVIFL 226 (262)
T ss_dssp ---GGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHH-HHHHHCSEEEEE
T ss_pred ---cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence 5689999999999999999999999999999999999999999999999877999999999975 466789999999
Q ss_pred cCCeEEEecChHHHH
Q 008534 370 GKGSLLYFGKASEAM 384 (562)
Q Consensus 370 ~~G~iv~~G~~~el~ 384 (562)
++|++++.|+++++.
T Consensus 227 ~~G~i~~~g~~~~~~ 241 (262)
T 1b0u_A 227 HQGKIEEEGDPEQVF 241 (262)
T ss_dssp ETTEEEEEECHHHHH
T ss_pred ECCEEEEeCCHHHHH
Confidence 999999999998875
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-50 Score=409.66 Aligned_cols=218 Identities=26% Similarity=0.479 Sum_probs=190.7
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCC----
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---- 224 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~---- 224 (562)
+|+++||+++| +++++|+||||+|++||+++|+||||||||||+|+|+|.+. +.+|+|.++|+++.
T Consensus 24 ~l~i~~l~~~y--------~~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~i~~~~~ 93 (263)
T 2olj_A 24 MIDVHQLKKSF--------GSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLED--FDEGEIIIDGINLKAKDT 93 (263)
T ss_dssp SEEEEEEEEEE--------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEESSSTTC
T ss_pred eEEEEeEEEEE--------CCEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCC--CCCcEEEECCEECCCccc
Confidence 69999999998 24579999999999999999999999999999999999653 56899999999873
Q ss_pred --hhccCcEEEEccCCCCCCCCCHHHHHHHHH-hhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHH
Q 008534 225 --KSLKSKIGFVTQDDVLFPHLTVKETLTYAA-LLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGER 301 (562)
Q Consensus 225 --~~~~~~igyV~Q~~~l~~~lTV~enl~~~~-~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqr 301 (562)
..+++.||||+|++.+|+.+||+||+.|+. ... .....+.++++.++++.++|.+..+.. +.+||||||
T Consensus 94 ~~~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~-----~~~LSgGqk 165 (263)
T 2olj_A 94 NLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVR---KWPREKAEAKAMELLDKVGLKDKAHAY-----PDSLSGGQA 165 (263)
T ss_dssp CHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHTTCGGGTTSC-----GGGSCHHHH
T ss_pred cHHHHhCcEEEEeCCCcCCCCCCHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcCC-----hhhCCHHHH
Confidence 124567999999999999999999999964 322 223445566788999999998776654 568999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChH
Q 008534 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKAS 381 (562)
Q Consensus 302 qRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~ 381 (562)
|||+|||||+.+|+||||||||+|||+.++..+++.|++++++|+|||++||++. .+..+||+|++|++|++++.|+++
T Consensus 166 QRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~G~i~~~g~~~ 244 (263)
T 2olj_A 166 QRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMG-FAREVGDRVLFMDGGYIIEEGKPE 244 (263)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEETTEEEEEECHH
T ss_pred HHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-HHHHhCCEEEEEECCEEEEECCHH
Confidence 9999999999999999999999999999999999999999877999999999975 466789999999999999999998
Q ss_pred HHHH
Q 008534 382 EAMA 385 (562)
Q Consensus 382 el~~ 385 (562)
++..
T Consensus 245 ~~~~ 248 (263)
T 2olj_A 245 DLFD 248 (263)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8753
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-51 Score=428.29 Aligned_cols=218 Identities=27% Similarity=0.448 Sum_probs=192.2
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeC----C
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPY----S 224 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~----~ 224 (562)
.|+++||+++| +++.+|+||||+|++||+++|+||||||||||||+|+|... +++|+|.++|+++ .
T Consensus 4 ~l~i~~ls~~y--------~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~--p~~G~I~i~G~~i~~~~~ 73 (359)
T 3fvq_A 4 ALHIGHLSKSF--------QNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQ--PDSGEISLSGKTIFSKNT 73 (359)
T ss_dssp CEEEEEEEEEE--------TTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSC--CSEEEEEETTEEEESSSC
T ss_pred EEEEEeEEEEE--------CCEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCC--CCCcEEEECCEECccccc
Confidence 59999999998 35679999999999999999999999999999999999543 5689999999987 2
Q ss_pred --hhccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHH
Q 008534 225 --KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (562)
Q Consensus 225 --~~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrq 302 (562)
...++.||||||++.+||++||+|||.|+...+ ...+.+.++++.++++.++|.+..+.. +.+|||||||
T Consensus 74 ~~~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~r~-----~~~LSGGq~Q 145 (359)
T 3fvq_A 74 NLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNG---KGRTAQERQRIEAMLELTGISELAGRY-----PHELSGGQQQ 145 (359)
T ss_dssp BCCGGGSCCEEECTTCCCCTTSCHHHHHHTTSTTS---SCCSHHHHHHHHHHHHHHTCGGGTTSC-----GGGSCHHHHH
T ss_pred ccchhhCCEEEEeCCCcCCCCCCHHHHHHHHHHHc---CCChHHHHHHHHHHHHHcCCchHhcCC-----hhhCCHHHHH
Confidence 134678999999999999999999999986433 234455667899999999998876654 5789999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-HCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChH
Q 008534 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA-EAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKAS 381 (562)
Q Consensus 303 Rv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~-~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~ 381 (562)
||+|||||+.+|+||||||||+|||+..+.++++.|+++. +.|+|+|++|||+. ++..+||||++|++|++++.|+++
T Consensus 146 RValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~-ea~~~aDri~vl~~G~i~~~g~~~ 224 (359)
T 3fvq_A 146 RAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDRE-EALQYADRIAVMKQGRILQTASPH 224 (359)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHH-HHHHHCSEEEEEETTEEEEEECHH
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHHCCEEEEEECCEEEEEeCHH
Confidence 9999999999999999999999999999999999888875 45999999999975 577899999999999999999999
Q ss_pred HHHH
Q 008534 382 EAMA 385 (562)
Q Consensus 382 el~~ 385 (562)
++..
T Consensus 225 el~~ 228 (359)
T 3fvq_A 225 ELYR 228 (359)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 9854
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-50 Score=404.46 Aligned_cols=218 Identities=24% Similarity=0.406 Sum_probs=191.5
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
.|+++||+++| +++++|+||||+|++||+++|+||||||||||+|+|+|.+. +.+|+|.++|+++..
T Consensus 15 ~l~i~~l~~~y--------~~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~~~~~~~ 84 (256)
T 1vpl_A 15 AVVVKDLRKRI--------GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIK--PSSGIVTVFGKNVVEEPH 84 (256)
T ss_dssp CEEEEEEEEEE--------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEETTTCHH
T ss_pred eEEEEEEEEEE--------CCEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEECCccHH
Confidence 69999999998 24579999999999999999999999999999999999653 568999999998753
Q ss_pred hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHH
Q 008534 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC 305 (562)
Q Consensus 226 ~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ 305 (562)
.+++.||||+|++.+++.+||+||+.++.... .....+..+++.++++.+||.+..++. +.+|||||||||+
T Consensus 85 ~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~LSgGq~qRv~ 156 (256)
T 1vpl_A 85 EVRKLISYLPEEAGAYRNMQGIEYLRFVAGFY---ASSSSEIEEMVERATEIAGLGEKIKDR-----VSTYSKGMVRKLL 156 (256)
T ss_dssp HHHTTEEEECTTCCCCTTSBHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHHCCGGGGGSB-----GGGCCHHHHHHHH
T ss_pred HHhhcEEEEcCCCCCCCCCcHHHHHHHHHHHc---CCChHHHHHHHHHHHHHCCCchHhcCC-----hhhCCHHHHHHHH
Confidence 35678999999999999999999999875432 123344456788999999998776654 4689999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHHH
Q 008534 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (562)
Q Consensus 306 IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~~ 385 (562)
|||||+.+|+||||||||+|||+.++..+++.|++++++|+|||++||++. .+..+||++++|++|++++.|+++++.+
T Consensus 157 lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~-~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 235 (256)
T 1vpl_A 157 IARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNML-EVEFLCDRIALIHNGTIVETGTVEELKE 235 (256)
T ss_dssp HHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHH-HHTTTCSEEEEEETTEEEEEEEHHHHHH
T ss_pred HHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-HHHHHCCEEEEEECCEEEEecCHHHHHH
Confidence 999999999999999999999999999999999999877999999999975 4667899999999999999999998765
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-50 Score=397.09 Aligned_cols=211 Identities=30% Similarity=0.434 Sum_probs=184.9
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
+|+++||+++| +++++|+||||+|++||+++|+||||||||||+|+|+|.+. +.+|+|.++|.++..
T Consensus 4 ~l~~~~l~~~y--------~~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~ 73 (224)
T 2pcj_A 4 ILRAENIKKVI--------RGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDA--PTEGKVFLEGKEVDYTNE 73 (224)
T ss_dssp EEEEEEEEEEE--------TTEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSC--CSEEEEEETTEECCSSCH
T ss_pred EEEEEeEEEEE--------CCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEECCCCCH
Confidence 69999999998 24679999999999999999999999999999999999653 568999999998742
Q ss_pred ----hcc-CcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhH
Q 008534 226 ----SLK-SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGE 300 (562)
Q Consensus 226 ----~~~-~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGq 300 (562)
.++ +.|+||+|++.+|+.+||+||+.++...+ .....+..+++.++++.++|.+..+.. +.+|||||
T Consensus 74 ~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgGq 145 (224)
T 2pcj_A 74 KELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKM---GKPKKEAKERGEYLLSELGLGDKLSRK-----PYELSGGE 145 (224)
T ss_dssp HHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCTTCTTCC-----GGGSCHHH
T ss_pred HHHHHHHhCcEEEEecCcccCCCCCHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCC-----hhhCCHHH
Confidence 123 57999999999999999999999976543 123444566788999999998776654 56899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecC
Q 008534 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (562)
Q Consensus 301 rqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (562)
||||+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||++.. + .+||+|++|++|++++.|+
T Consensus 146 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~-~-~~~d~v~~l~~G~i~~~g~ 222 (224)
T 2pcj_A 146 QQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHEREL-A-ELTHRTLEMKDGKVVGEIT 222 (224)
T ss_dssp HHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHH-H-TTSSEEEEEETTEEEEEEE
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHH-H-HhCCEEEEEECCEEEEEee
Confidence 999999999999999999999999999999999999999998779999999999653 4 7899999999999999986
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-50 Score=404.54 Aligned_cols=218 Identities=25% Similarity=0.397 Sum_probs=188.4
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
+|+++||+++| +++++|+||||+|++||+++|+||||||||||+|+|+|.+. +.+|+|.++|.++..
T Consensus 7 ~l~i~~l~~~y--------~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~--p~~G~i~~~g~~~~~~~~ 76 (257)
T 1g6h_A 7 ILRTENIVKYF--------GEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLK--ADEGRVYFENKDITNKEP 76 (257)
T ss_dssp EEEEEEEEEEE--------TTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECTTCCH
T ss_pred EEEEeeeEEEE--------CCEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECCCCCH
Confidence 69999999998 24579999999999999999999999999999999999653 568999999998753
Q ss_pred --hccCcEEEEccCCCCCCCCCHHHHHHHHHhh-CCCC---------CccHHHHHHHHHHHHHHcCCCccccccccCccc
Q 008534 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALL-RLPN---------TLTKQQKEKRAIDVINELGLERCQDTMIGGSFV 293 (562)
Q Consensus 226 --~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~-~~~~---------~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~ 293 (562)
..++.||||+|++.+|+.+||+||+.++... .... .....+..+++.++++.+||.+..++. +
T Consensus 77 ~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~ 151 (257)
T 1g6h_A 77 AELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRK-----A 151 (257)
T ss_dssp HHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSB-----G
T ss_pred HHHHhCCEEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCC-----c
Confidence 2356799999999999999999999987532 1000 012234456788999999998776654 4
Q ss_pred CCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCe
Q 008534 294 RGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGS 373 (562)
Q Consensus 294 ~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~ 373 (562)
.+|||||||||+|||||+.+|+||||||||+|||+.++..+++.|++++++|+|||++||++.. +..+||+|++|++|+
T Consensus 152 ~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~-~~~~~d~v~~l~~G~ 230 (257)
T 1g6h_A 152 GELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDI-VLNYIDHLYVMFNGQ 230 (257)
T ss_dssp GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCST-TGGGCSEEEEEETTE
T ss_pred hhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHH-HHHhCCEEEEEECCE
Confidence 6899999999999999999999999999999999999999999999998779999999999864 667899999999999
Q ss_pred EEEecChHH
Q 008534 374 LLYFGKASE 382 (562)
Q Consensus 374 iv~~G~~~e 382 (562)
+++.|++++
T Consensus 231 i~~~g~~~~ 239 (257)
T 1g6h_A 231 IIAEGRGEE 239 (257)
T ss_dssp EEEEEESHH
T ss_pred EEEEeCHHH
Confidence 999999988
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-49 Score=419.41 Aligned_cols=218 Identities=26% Similarity=0.499 Sum_probs=192.3
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh--h
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--S 226 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--~ 226 (562)
.|+++||+++| +++.+|+||||+|++||+++|+||||||||||||+|+|... +++|+|.++|+++.. .
T Consensus 3 ~l~~~~l~~~y--------~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i~~~~~ 72 (359)
T 2yyz_A 3 SIRVVNLKKYF--------GKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYK--PTSGEIYFDDVLVNDIPP 72 (359)
T ss_dssp CEEEEEEEEEE--------TTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTSCG
T ss_pred EEEEEEEEEEE--------CCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCC--CCccEEEECCEECCCCCh
Confidence 48999999998 24579999999999999999999999999999999999643 568999999999853 3
Q ss_pred ccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHH
Q 008534 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (562)
Q Consensus 227 ~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~I 306 (562)
.++.||||||++.+||++||+||+.|+...+ ..++.+.++++.++++.++|.+..+.. +.+|||||||||+|
T Consensus 73 ~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~-----~~~LSgGq~QRval 144 (359)
T 2yyz_A 73 KYREVGMVFQNYALYPHMTVFENIAFPLRAR---RISKDEVEKRVVEIARKLLIDNLLDRK-----PTQLSGGQQQRVAL 144 (359)
T ss_dssp GGTTEEEECSSCCCCTTSCHHHHHHGGGSSS---CSHHHHTTHHHHHHHHHTTCGGGTTSC-----GGGSCHHHHHHHHH
T ss_pred hhCcEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhcCC-----hhhCCHHHHHHHHH
Confidence 4578999999999999999999999976432 234445567889999999998776654 57899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHHH
Q 008534 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (562)
Q Consensus 307 AraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~~ 385 (562)
||||+.+|+||||||||++||+.++..+.+.|+++.++ |.|+|++||++. ++..+||+|++|++|++++.|+++++..
T Consensus 145 ArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~~~~~adri~vl~~G~i~~~g~~~~l~~ 223 (359)
T 2yyz_A 145 ARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQA-EAMTMASRIAVFNQGKLVQYGTPDEVYD 223 (359)
T ss_dssp HHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999999999999999754 999999999975 4778999999999999999999999853
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-49 Score=419.19 Aligned_cols=218 Identities=28% Similarity=0.508 Sum_probs=193.2
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh--h
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--S 226 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--~ 226 (562)
.|+++||+++| +++.+|+||||+|++||+++|+||||||||||||+|+|.+. +++|+|.++|+++.. .
T Consensus 3 ~l~~~~l~~~y--------~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i~~~~~ 72 (362)
T 2it1_A 3 EIKLENIVKKF--------GNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYK--PTSGKIYFDEKDVTELPP 72 (362)
T ss_dssp CEEEEEEEEES--------SSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTSCG
T ss_pred EEEEEeEEEEE--------CCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC--CCceEEEECCEECCcCCH
Confidence 48999999987 24579999999999999999999999999999999999643 568999999999853 2
Q ss_pred ccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHH
Q 008534 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (562)
Q Consensus 227 ~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~I 306 (562)
.++.||||||++.+||++||+||+.|+...+ ..++.+.++++.++++.++|.+..+.. +.+|||||||||+|
T Consensus 73 ~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~-----~~~LSGGq~QRval 144 (362)
T 2it1_A 73 KDRNVGLVFQNWALYPHMTVYKNIAFPLELR---KAPREEIDKKVREVAKMLHIDKLLNRY-----PWQLSGGQQQRVAI 144 (362)
T ss_dssp GGTTEEEECTTCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCTTCTTCC-----GGGSCHHHHHHHHH
T ss_pred hHCcEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhhCC-----hhhCCHHHHHHHHH
Confidence 3578999999999999999999999987543 234556667899999999998776654 57899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHHH
Q 008534 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (562)
Q Consensus 307 AraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~~ 385 (562)
||||+.+|+||||||||+|||+.++..+.+.|+++.++ |+|+|++||++. ++..+||+|++|++|++++.|+++++..
T Consensus 145 ArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~G~i~~~g~~~~~~~ 223 (362)
T 2it1_A 145 ARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQA-EALAMADRIAVIREGEILQVGTPDEVYY 223 (362)
T ss_dssp HHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999999999754 999999999975 4778999999999999999999999853
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-49 Score=417.58 Aligned_cols=220 Identities=24% Similarity=0.465 Sum_probs=194.3
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh--
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~-- 225 (562)
..|+++||+++|. +++.+|+||||+|++||+++|+||||||||||||+|+|.+. +++|+|.++|+++..
T Consensus 13 ~~l~~~~l~~~y~-------g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i~~~~ 83 (355)
T 1z47_A 13 MTIEFVGVEKIYP-------GGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLER--PTKGDVWIGGKRVTDLP 83 (355)
T ss_dssp EEEEEEEEEECCT-------TSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTCC
T ss_pred ceEEEEEEEEEEc-------CCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCC--CCccEEEECCEECCcCC
Confidence 4799999999871 24579999999999999999999999999999999999653 568999999998853
Q ss_pred hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHH
Q 008534 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC 305 (562)
Q Consensus 226 ~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ 305 (562)
..++.||||||++.+||++||+||+.|+...+ ..++.+.++++.++++.++|.+..+.. +.+|||||||||+
T Consensus 84 ~~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~r~-----~~~LSGGq~QRva 155 (355)
T 1z47_A 84 PQKRNVGLVFQNYALFQHMTVYDNVSFGLREK---RVPKDEMDARVRELLRFMRLESYANRF-----PHELSGGQQQRVA 155 (355)
T ss_dssp GGGSSEEEECGGGCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCGGGTTSC-----GGGSCHHHHHHHH
T ss_pred hhhCcEEEEecCcccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhcCC-----cccCCHHHHHHHH
Confidence 34678999999999999999999999987543 234556677899999999998776654 5789999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHH
Q 008534 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (562)
Q Consensus 306 IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~ 384 (562)
|||||+.+|+||||||||++||+.++.++++.|+++.++ |+|+|++||++. ++..+||+|++|++|++++.|+++++.
T Consensus 156 lArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~G~i~~~g~~~~l~ 234 (355)
T 1z47_A 156 LARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQE-EALEVADRVLVLHEGNVEQFGTPEEVY 234 (355)
T ss_dssp HHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999999999999999999999754 999999999975 477899999999999999999999885
Q ss_pred H
Q 008534 385 A 385 (562)
Q Consensus 385 ~ 385 (562)
.
T Consensus 235 ~ 235 (355)
T 1z47_A 235 E 235 (355)
T ss_dssp H
T ss_pred h
Confidence 3
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-49 Score=419.32 Aligned_cols=218 Identities=28% Similarity=0.484 Sum_probs=192.8
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
+|+++||+++| +++.+|+||||+|++||+++|+||||||||||||+|+|.+. +++|+|.++|+++..
T Consensus 3 ~l~~~~l~~~y--------~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~~~~~~~ 72 (372)
T 1g29_1 3 GVRLVDVWKVF--------GEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEE--PSRGQIYIGDKLVADPEK 72 (372)
T ss_dssp EEEEEEEEEEE--------TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC--CSEEEEEETTEEEEEGGG
T ss_pred EEEEEeEEEEE--------CCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCC--CCccEEEECCEECccccc
Confidence 58999999998 24579999999999999999999999999999999999643 568999999988632
Q ss_pred -----hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhH
Q 008534 226 -----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGE 300 (562)
Q Consensus 226 -----~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGq 300 (562)
..++.||||||++.+||++||+||+.|+...+ ..++.+.++++.++++.++|.+..+.. +.+|||||
T Consensus 73 ~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~-----~~~LSGGq 144 (372)
T 1g29_1 73 GIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLR---KVPRQEIDQRVREVAELLGLTELLNRK-----PRELSGGQ 144 (372)
T ss_dssp TEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHHTCGGGTTCC-----GGGSCHHH
T ss_pred cccCCHhHCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcCC-----cccCCHHH
Confidence 23577999999999999999999999987543 234556667899999999998776654 57899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecC
Q 008534 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (562)
Q Consensus 301 rqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (562)
||||+|||||+.+|+||||||||++||+.++..+.+.|+++.++ |.|+|++||++. ++..+||+|++|++|++++.|+
T Consensus 145 ~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~G~i~~~g~ 223 (372)
T 1g29_1 145 RQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQV-EAMTMGDRIAVMNRGVLQQVGS 223 (372)
T ss_dssp HHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEETTEEEEEEC
T ss_pred HHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHH-HHHHhCCEEEEEeCCEEEEeCC
Confidence 99999999999999999999999999999999999999999754 999999999975 4778999999999999999999
Q ss_pred hHHHHH
Q 008534 380 ASEAMA 385 (562)
Q Consensus 380 ~~el~~ 385 (562)
++++..
T Consensus 224 ~~~l~~ 229 (372)
T 1g29_1 224 PDEVYD 229 (372)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 999853
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-49 Score=398.03 Aligned_cols=216 Identities=25% Similarity=0.404 Sum_probs=185.8
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
+|+++||+++| +++++|+||||+|++||+++|+||||||||||+|+|+|.+. +.+|+|.++|.++..
T Consensus 6 ~l~~~~l~~~y--------~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~ 75 (240)
T 1ji0_A 6 VLEVQSLHVYY--------GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVR--AQKGKIIFNGQDITNKPA 75 (240)
T ss_dssp EEEEEEEEEEE--------TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECTTCCH
T ss_pred eEEEEeEEEEE--------CCeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCCCCH
Confidence 69999999998 24579999999999999999999999999999999999643 568999999998753
Q ss_pred -h-ccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcC-CCccccccccCcccCCCChhHHH
Q 008534 226 -S-LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG-LERCQDTMIGGSFVRGVSGGERK 302 (562)
Q Consensus 226 -~-~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-L~~~~~t~vg~~~~~~LSGGqrq 302 (562)
. .++.||||+|++.+|+.+||+||+.++..... ......+++.++++.++ |.+..++ .+.+|||||||
T Consensus 76 ~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~----~~~~~~~~~~~~l~~~~~l~~~~~~-----~~~~LSgGq~q 146 (240)
T 1ji0_A 76 HVINRMGIALVPEGRRIFPELTVYENLMMGAYNRK----DKEGIKRDLEWIFSLFPRLKERLKQ-----LGGTLSGGEQQ 146 (240)
T ss_dssp HHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTCC----CSSHHHHHHHHHHHHCHHHHTTTTS-----BSSSSCHHHHH
T ss_pred HHHHhCCEEEEecCCccCCCCcHHHHHHHhhhcCC----CHHHHHHHHHHHHHHcccHhhHhcC-----ChhhCCHHHHH
Confidence 1 24569999999999999999999998642211 12233456778889884 8765554 35789999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHH
Q 008534 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (562)
Q Consensus 303 Rv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~e 382 (562)
||+|||||+.+|+||||||||+|||+.++..+++.|++++++|+|||++||++. .+..+||+|++|++|++++.|++++
T Consensus 147 rv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~G~i~~~g~~~~ 225 (240)
T 1ji0_A 147 MLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNAL-GALKVAHYGYVLETGQIVLEGKASE 225 (240)
T ss_dssp HHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHH-HHHHHCSEEEEEETTEEEEEEEHHH
T ss_pred HHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEEcCHHH
Confidence 999999999999999999999999999999999999999877999999999975 4678999999999999999999988
Q ss_pred HH
Q 008534 383 AM 384 (562)
Q Consensus 383 l~ 384 (562)
+.
T Consensus 226 ~~ 227 (240)
T 1ji0_A 226 LL 227 (240)
T ss_dssp HH
T ss_pred Hh
Confidence 64
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-50 Score=419.15 Aligned_cols=218 Identities=27% Similarity=0.483 Sum_probs=192.5
Q ss_pred eEEEEeEEEEEeecccCCccccc--eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh-
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKD--ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~--iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~- 225 (562)
+|+++||+++| +++. +|+||||+|++||+++|+||||||||||||+|+|... +++|+|.++|+++..
T Consensus 3 ~l~i~~l~~~y--------~~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i~~~ 72 (353)
T 1oxx_K 3 RIIVKNVSKVF--------KKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDV--PSTGELYFDDRLVASN 72 (353)
T ss_dssp CEEEEEEEEEE--------GGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSC--CSEEEEEETTEEEEET
T ss_pred EEEEEeEEEEE--------CCEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEECccc
Confidence 48999999998 2456 9999999999999999999999999999999999543 568999999988632
Q ss_pred ------hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChh
Q 008534 226 ------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (562)
Q Consensus 226 ------~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGG 299 (562)
..++.||||||++.+||++||+||+.|+...+ ..++.+.++++.++++.++|.+..+.. +.+||||
T Consensus 73 ~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~~~-----~~~LSGG 144 (353)
T 1oxx_K 73 GKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM---KMSKEEIRKRVEEVAKILDIHHVLNHF-----PRELSGA 144 (353)
T ss_dssp TEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTS---SCCHHHHHHHHHHHHHHTTCGGGTTSC-----GGGSCHH
T ss_pred ccccCChhhCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchHhcCC-----hhhCCHH
Confidence 34678999999999999999999999986432 234556667899999999998776654 5789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEec
Q 008534 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (562)
Q Consensus 300 qrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G 378 (562)
|||||+|||||+.+|+||||||||++||+.++.++++.|+++.++ |+|+|++||++. ++..+||+|++|++|++++.|
T Consensus 145 q~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~~~~~adri~vl~~G~i~~~g 223 (353)
T 1oxx_K 145 QQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPA-DIFAIADRVGVLVKGKLVQVG 223 (353)
T ss_dssp HHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEc
Confidence 999999999999999999999999999999999999999999754 999999999975 477899999999999999999
Q ss_pred ChHHHHH
Q 008534 379 KASEAMA 385 (562)
Q Consensus 379 ~~~el~~ 385 (562)
+++++..
T Consensus 224 ~~~~l~~ 230 (353)
T 1oxx_K 224 KPEDLYD 230 (353)
T ss_dssp CHHHHHH
T ss_pred CHHHHHh
Confidence 9999853
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-49 Score=403.23 Aligned_cols=215 Identities=26% Similarity=0.405 Sum_probs=188.4
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
.|+++||+|.| +++++|+||||+|++||+++|+||||||||||+|+|+|.+. +.+|+|.++|+++..
T Consensus 11 ~l~~~~l~~~~--------~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~~~~~~~ 80 (266)
T 4g1u_C 11 LLEASHLHYHV--------QQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLS--PSHGECHLLGQNLNSWQP 80 (266)
T ss_dssp EEEEEEEEEEE--------TTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSC--CSSCEEEETTEETTTSCH
T ss_pred eEEEEeEEEEe--------CCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECCEECCcCCH
Confidence 69999999998 35679999999999999999999999999999999999643 568999999999853
Q ss_pred -hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHH
Q 008534 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (562)
Q Consensus 226 -~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 304 (562)
.+++.++||+|++.+++.+||+||+.++.... ......+++.++++.++|.+..+.. +.+|||||||||
T Consensus 81 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgGq~QRv 150 (266)
T 4g1u_C 81 KALARTRAVMRQYSELAFPFSVSEVIQMGRAPY-----GGSQDRQALQQVMAQTDCLALAQRD-----YRVLSGGEQQRV 150 (266)
T ss_dssp HHHHHHEEEECSCCCCCSCCBHHHHHHGGGTTS-----CSTTHHHHHHHHHHHTTCSTTTTSB-----GGGCCHHHHHHH
T ss_pred HHHhheEEEEecCCccCCCCCHHHHHHhhhhhc-----CcHHHHHHHHHHHHHcCChhHhcCC-----cccCCHHHHHHH
Confidence 34567999999998888899999999876432 1122345788899999998776654 468999999999
Q ss_pred HHHHHHhh------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEe
Q 008534 305 CIGNEIII------NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (562)
Q Consensus 305 ~IAraLl~------~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~ 377 (562)
+|||||+. +|+||||||||+|||+.++..+++.|++++++ |+|||++||++. .+..+||+|++|++|++++.
T Consensus 151 ~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~-~~~~~~d~v~vl~~G~i~~~ 229 (266)
T 4g1u_C 151 QLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLN-LAALYADRIMLLAQGKLVAC 229 (266)
T ss_dssp HHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHH-HHHHHCSEEEEEETTEEEEE
T ss_pred HHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHH-HHHHhCCEEEEEECCEEEEE
Confidence 99999999 99999999999999999999999999999765 579999999975 46779999999999999999
Q ss_pred cChHHHH
Q 008534 378 GKASEAM 384 (562)
Q Consensus 378 G~~~el~ 384 (562)
|+++++.
T Consensus 230 g~~~~~~ 236 (266)
T 4g1u_C 230 GTPEEVL 236 (266)
T ss_dssp ECHHHHC
T ss_pred cCHHHHh
Confidence 9999874
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-49 Score=419.10 Aligned_cols=218 Identities=26% Similarity=0.471 Sum_probs=186.5
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh--h
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--S 226 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--~ 226 (562)
.|+++||+++| +++.+|+||||+|++||+++|+||||||||||||+|+|.+. +++|+|.++|+++.. .
T Consensus 11 ~l~~~~l~~~y--------~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i~~~~~ 80 (372)
T 1v43_A 11 EVKLENLTKRF--------GNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE--PTEGRIYFGDRDVTYLPP 80 (372)
T ss_dssp CEEEEEEEEEE--------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTSCG
T ss_pred eEEEEEEEEEE--------CCEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCC--CCceEEEECCEECCCCCh
Confidence 49999999998 24579999999999999999999999999999999999543 568999999998753 2
Q ss_pred ccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHH
Q 008534 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (562)
Q Consensus 227 ~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~I 306 (562)
.++.||||||++.+||++||+||+.|+...+ ..++.+.++++.++++.++|.+..+. ++.+|||||||||+|
T Consensus 81 ~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r-----~~~~LSGGq~QRval 152 (372)
T 1v43_A 81 KDRNISMVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEELLNR-----YPAQLSGGQRQRVAV 152 (372)
T ss_dssp GGGTEEEEEC------CCCHHHHHHTTCC-----CCCHHHHHHHHHHHHHHTTCGGGTTS-----CTTTCCSSCHHHHHH
T ss_pred hhCcEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhHhcC-----ChhhCCHHHHHHHHH
Confidence 3577999999999999999999999975332 23455666789999999999877665 457899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHHH
Q 008534 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (562)
Q Consensus 307 AraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~~ 385 (562)
||||+.+|+||||||||++||+..+..+.+.|+++.++ |.|+|++||++. ++..+||+|++|++|++++.|+++++..
T Consensus 153 ArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~G~i~~~g~~~~l~~ 231 (372)
T 1v43_A 153 ARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQV-EAMTMGDRIAVMNRGQLLQIGSPTEVYL 231 (372)
T ss_dssp HHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999999999999999765 999999999975 4778999999999999999999999853
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-49 Score=410.24 Aligned_cols=215 Identities=29% Similarity=0.502 Sum_probs=180.3
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh--
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~-- 225 (562)
..|+++||+|+|. ..+++|+||||+|++||++||+||||||||||+++|+|. +. +.+|+|.+||.++..
T Consensus 52 ~~i~~~~vs~~y~-------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl-~~-p~~G~I~i~G~~i~~~~ 122 (306)
T 3nh6_A 52 GRIEFENVHFSYA-------DGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRF-YD-ISSGCIRIDGQDISQVT 122 (306)
T ss_dssp CCEEEEEEEEESS-------TTCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTS-SC-CSEEEEEETTEETTSBC
T ss_pred CeEEEEEEEEEcC-------CCCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcC-CC-CCCcEEEECCEEcccCC
Confidence 4699999999982 245799999999999999999999999999999999985 43 458999999999863
Q ss_pred --hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcC-------CCccccccccCcccCCC
Q 008534 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG-------LERCQDTMIGGSFVRGV 296 (562)
Q Consensus 226 --~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~t~vg~~~~~~L 296 (562)
.+|+.||||+|++.+|+ .||+|||.|+.... ..+ ++.++++..+ +++.+++.++. .+.+|
T Consensus 123 ~~~~r~~i~~v~Q~~~lf~-~Tv~eNi~~~~~~~-----~~~----~~~~~~~~~~l~~~i~~lp~gl~t~~~~-~g~~L 191 (306)
T 3nh6_A 123 QASLRSHIGVVPQDTVLFN-DTIADNIRYGRVTA-----GND----EVEAAAQAAGIHDAIMAFPEGYRTQVGE-RGLKL 191 (306)
T ss_dssp HHHHHHTEEEECSSCCCCS-EEHHHHHHTTSTTC-----CHH----HHHHHHHHHTCHHHHHHSTTGGGCEEST-TSBCC
T ss_pred HHHHhcceEEEecCCccCc-ccHHHHHHhhcccC-----CHH----HHHHHHHHhCcHHHHHhccchhhhHhcC-CcCCC
Confidence 46788999999999996 59999999874221 121 1222333322 34566777764 45689
Q ss_pred ChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEE
Q 008534 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (562)
Q Consensus 297 SGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~ 376 (562)
||||||||+|||||+.+|+||||||||++||+.++..|++.|+++.+ ++|+|+|||+++. + ..||+|++|++|+|++
T Consensus 192 SGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l~~-~-~~aD~i~vl~~G~iv~ 268 (306)
T 3nh6_A 192 SGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCA-NRTTIVVAHRLST-V-VNADQILVIKDGCIVE 268 (306)
T ss_dssp CHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHT-TSEEEEECCSHHH-H-HTCSEEEEEETTEEEE
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcC-CCEEEEEEcChHH-H-HcCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999864 7999999999864 4 4599999999999999
Q ss_pred ecChHHHHH
Q 008534 377 FGKASEAMA 385 (562)
Q Consensus 377 ~G~~~el~~ 385 (562)
.|++++++.
T Consensus 269 ~G~~~el~~ 277 (306)
T 3nh6_A 269 RGRHEALLS 277 (306)
T ss_dssp EECHHHHHH
T ss_pred ECCHHHHHh
Confidence 999999875
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-49 Score=412.79 Aligned_cols=213 Identities=29% Similarity=0.498 Sum_probs=187.7
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh--h
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--S 226 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--~ 226 (562)
+|+++||+++| +++ +|+||||+|++||+++|+||||||||||||+|+|... +++|+|.++|+++.. .
T Consensus 1 ml~~~~l~~~y--------~~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~~~g~~i~~~~~ 69 (348)
T 3d31_A 1 MIEIESLSRKW--------KNF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHV--PDSGRILLDGKDVTDLSP 69 (348)
T ss_dssp CEEEEEEEEEC--------SSC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSC--CSEEEEEETTEECTTSCH
T ss_pred CEEEEEEEEEE--------CCE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCC--CCCcEEEECCEECCCCch
Confidence 37899999998 245 9999999999999999999999999999999999643 568999999998853 3
Q ss_pred ccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHH
Q 008534 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (562)
Q Consensus 227 ~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~I 306 (562)
.++.||||||++.+||++||+||+.|+...+. ..+. +++.++++.++|.+..+.. +.+|||||||||+|
T Consensus 70 ~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~---~~~~---~~v~~~l~~~~L~~~~~~~-----~~~LSgGq~QRval 138 (348)
T 3d31_A 70 EKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKK---IKDP---KRVLDTARDLKIEHLLDRN-----PLTLSGGEQQRVAL 138 (348)
T ss_dssp HHHTCEEECTTCCCCTTSCHHHHHHHHHHHHC---CCCH---HHHHHHHHHTTCTTTTTSC-----GGGSCHHHHHHHHH
T ss_pred hhCcEEEEecCcccCCCCCHHHHHHHHHHHcC---CCHH---HHHHHHHHHcCCchHhcCC-----hhhCCHHHHHHHHH
Confidence 46789999999999999999999999865431 1111 5788999999998877654 57899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHH
Q 008534 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (562)
Q Consensus 307 AraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~ 384 (562)
||||+.+|++|||||||++||+.++..+.+.|+++.+ .|+|+|++||++. ++..+||+|++|++|++++.|+++++.
T Consensus 139 AraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~-~~~~~adri~vl~~G~i~~~g~~~~~~ 216 (348)
T 3d31_A 139 ARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQT-EARIMADRIAVVMDGKLIQVGKPEEIF 216 (348)
T ss_dssp HHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHH-HHHHHCSEEEEESSSCEEEEECHHHHH
T ss_pred HHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 9999999999999999999999999999999999975 4999999999975 477899999999999999999999875
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-51 Score=458.16 Aligned_cols=351 Identities=24% Similarity=0.312 Sum_probs=247.5
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCccccccccCCCCcchhhhhhhhhhhcCCCcccccccceeeeeecccccccccccccch
Q 008534 9 SLARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSG 88 (562)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 88 (562)
+..++.++..++..+...|.+...++||+|+.+..+.++|.+..........+.....+...........-..+.-+..|
T Consensus 187 ~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g 266 (578)
T 4a82_A 187 KLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAYSFAAINTVTDIGPIIVIGVG 266 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677778888899999999999999999998888888766555433221111000000000000001112234577
Q ss_pred hhhhhhhhhhhhhhcccccCCCCccccc----------------cCCCCCCCCCccccccccCCCCCCCCCCCCceeEEE
Q 008534 89 AALSRASSASLGLSFSFTGFTMPPDEIA----------------DSKPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLKF 152 (562)
Q Consensus 89 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 152 (562)
+.++..+..+.|.++++..+........ ..+.+...+.+++.... ......+.....+++
T Consensus 267 ~~~v~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~----~~~~~~~~~~~~i~~ 342 (578)
T 4a82_A 267 AYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDEDYDIKNG----VGAQPIEIKQGRIDI 342 (578)
T ss_dssp HHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSSCCC----TTCCCCCCCSCCEEE
T ss_pred HHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCC----CCccccCCCCCeEEE
Confidence 7777777788887777655432211110 00111111111111100 000011122346999
Q ss_pred EeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh----hcc
Q 008534 153 TDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLK 228 (562)
Q Consensus 153 ~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~----~~~ 228 (562)
+||+|+|. ..++++|+|+||+|++||++||+||||||||||+++|+|.+ + +.+|+|.+||+++.. .+|
T Consensus 343 ~~v~~~y~------~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~-~-p~~G~i~~~g~~~~~~~~~~~r 414 (578)
T 4a82_A 343 DHVSFQYN------DNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFY-D-VTSGQILIDGHNIKDFLTGSLR 414 (578)
T ss_dssp EEEEECSC------SSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSS-C-CSEEEEEETTEEGGGSCHHHHH
T ss_pred EEEEEEcC------CCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCC-C-CCCcEEEECCEEhhhCCHHHHh
Confidence 99999882 23467999999999999999999999999999999999854 3 458999999999853 467
Q ss_pred CcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHc-------CCCccccccccCcccCCCChhHH
Q 008534 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINEL-------GLERCQDTMIGGSFVRGVSGGER 301 (562)
Q Consensus 229 ~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~l-------gL~~~~~t~vg~~~~~~LSGGqr 301 (562)
++||||+|++.+|+. ||+|||.++.. . ..++ ++.+.++.. .+++..+|.+|.. +.+||||||
T Consensus 415 ~~i~~v~Q~~~l~~~-tv~eni~~~~~----~-~~~~----~~~~~~~~~~~~~~~~~lp~g~~t~~~~~-g~~LSgGq~ 483 (578)
T 4a82_A 415 NQIGLVQQDNILFSD-TVKENILLGRP----T-ATDE----EVVEAAKMANAHDFIMNLPQGYDTEVGER-GVKLSGGQK 483 (578)
T ss_dssp HTEEEECSSCCCCSS-BHHHHHGGGCS----S-CCHH----HHHHHHHHTTCHHHHHTSTTGGGCBCCGG-GTTSCHHHH
T ss_pred hheEEEeCCCccCcc-cHHHHHhcCCC----C-CCHH----HHHHHHHHhCcHHHHHhCcchhhhhhccC-CCcCCHHHH
Confidence 889999999999975 99999998632 1 1222 222333332 3466788888754 567999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChH
Q 008534 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKAS 381 (562)
Q Consensus 302 qRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~ 381 (562)
|||+|||||+++|+|||||||||+||+.++..+.+.|+++. +++|+|++||+++. + ..||+|++|++|++++.|+++
T Consensus 484 Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~-~-~~~d~i~~l~~G~i~~~g~~~ 560 (578)
T 4a82_A 484 QRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS-KDRTTLIVAHRLST-I-THADKIVVIENGHIVETGTHR 560 (578)
T ss_dssp HHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSSGGG-T-TTCSEEEEEETTEEEEEECHH
T ss_pred HHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH-H-HcCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999999999999885 47999999999875 3 569999999999999999999
Q ss_pred HHHH
Q 008534 382 EAMA 385 (562)
Q Consensus 382 el~~ 385 (562)
|+++
T Consensus 561 el~~ 564 (578)
T 4a82_A 561 ELIA 564 (578)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 9874
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-51 Score=459.56 Aligned_cols=357 Identities=21% Similarity=0.254 Sum_probs=245.4
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCccccccccCCCCcchhhhhhhhhhhcCCCcccccccceeeeeecccccccccccccch
Q 008534 9 SLARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSG 88 (562)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 88 (562)
+..++.+++.++..+...|.+...+|||+|+.+..+.++|.+..........+.....+...........-..+.-++.|
T Consensus 189 ~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~g 268 (587)
T 3qf4_A 189 PLFRKIQESTDEVNRVVRENLLGVRVVRAFRREEYENENFRKANESLRRSIISAFSLIVFALPLFIFIVNMGMIAVLWFG 268 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566677888888899999999999999999988888888766554332211000000000000000000111224567
Q ss_pred hhhhhhhhhhhhhhcccccCCCCccccccCCC----------CCCCCCccccccccCC--CCCCCCCCCCceeEEEEeEE
Q 008534 89 AALSRASSASLGLSFSFTGFTMPPDEIADSKP----------FSDDDIPEDIEAGTRE--RPKFQTEPTLPIYLKFTDVT 156 (562)
Q Consensus 89 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~nvs 156 (562)
+.++..+..+.|.++++..+............ .+..++.+.++..+.. .......+.....|+++||+
T Consensus 269 ~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~v~ 348 (587)
T 3qf4_A 269 GVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIVRASASAKRVLEVLNEKPAIEEADNALALPNVEGSVSFENVE 348 (587)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSCCCCTTCBCCSCCCCCEEEEEEE
T ss_pred HHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCCCCCccccCCCCCcEEEEEEE
Confidence 77777777777776665543221110000000 0000011111111100 00000111223479999999
Q ss_pred EEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh----hccCcEE
Q 008534 157 YKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIG 232 (562)
Q Consensus 157 ~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~----~~~~~ig 232 (562)
|+|+ ...+++|+|+||+|++||++||+||||||||||+++|+|. ++ +.+|+|.+||+++.+ .+|++|+
T Consensus 349 ~~y~------~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~-~~-~~~G~i~i~g~~i~~~~~~~~r~~i~ 420 (587)
T 3qf4_A 349 FRYF------ENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRL-ID-PERGRVEVDELDVRTVKLKDLRGHIS 420 (587)
T ss_dssp ECSS------SSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTS-SC-CSEEEEEESSSBGGGBCHHHHHHHEE
T ss_pred EEcC------CCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-cc-CCCcEEEECCEEcccCCHHHHHhheE
Confidence 9882 2356799999999999999999999999999999999985 43 458999999999853 4678899
Q ss_pred EEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHH-----HHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHH
Q 008534 233 FVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEK-----RAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (562)
Q Consensus 233 yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~-----~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA 307 (562)
||+|++.+|+. ||+|||.++.. ..++++..+ .+.+.++ .+++..++.++. .+.+|||||||||+||
T Consensus 421 ~v~Q~~~lf~~-tv~eni~~~~~-----~~~~~~~~~~~~~~~~~~~i~--~l~~g~~~~~~~-~~~~LSgGqrQrv~lA 491 (587)
T 3qf4_A 421 AVPQETVLFSG-TIKENLKWGRE-----DATDDEIVEAAKIAQIHDFII--SLPEGYDSRVER-GGRNFSGGQKQRLSIA 491 (587)
T ss_dssp EECSSCCCCSE-EHHHHHTTTCS-----SCCHHHHHHHHHHTTCHHHHH--TSSSGGGCEECS-SSCSSCHHHHHHHHHH
T ss_pred EECCCCcCcCc-cHHHHHhccCC-----CCCHHHHHHHHHHhCcHHHHH--hcccchhhHhcC-CCCCcCHHHHHHHHHH
Confidence 99999999975 99999988632 112222111 1223333 356677888775 4568999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHHH
Q 008534 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (562)
Q Consensus 308 raLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~~ 385 (562)
|||+++|+|||||||||+||+.++..+.+.|+++. +|+|+|++||+++. ...||+|++|++|++++.|+++|+++
T Consensus 492 Ral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~--~~~~d~i~vl~~G~i~~~g~~~el~~ 566 (587)
T 3qf4_A 492 RALVKKPKVLILDDCTSSVDPITEKRILDGLKRYT-KGCTTFIITQKIPT--ALLADKILVLHEGKVAGFGTHKELLE 566 (587)
T ss_dssp HHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHS-TTCEEEEEESCHHH--HTTSSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhC-CCCEEEEEecChHH--HHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999999999999999985 48999999999864 46899999999999999999999875
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-50 Score=451.32 Aligned_cols=350 Identities=21% Similarity=0.256 Sum_probs=248.2
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCccccccccCCCCcchhhhhhhhhhhcCCCcccccccceeeeeecccccccccccccch
Q 008534 9 SLARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSG 88 (562)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 88 (562)
+..++.++...+..+...|.+...++||+|+.+....++|.+..........+.....+...........-..+.-++.|
T Consensus 191 ~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g 270 (582)
T 3b5x_A 191 KISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVSAQSIADPVIQMIASLALFAVLFLA 270 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555677778888889999999999999999999999988776665443222111111100000001111112234467
Q ss_pred hhhhhhhhhhhhhhcccccCCCCccccc----------------cCCCCCCCCCccccccccCCCCCCCCCCCCceeEEE
Q 008534 89 AALSRASSASLGLSFSFTGFTMPPDEIA----------------DSKPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLKF 152 (562)
Q Consensus 89 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 152 (562)
+.++..+..+.|.++++..+........ ..+.+...+.++..+ +.....+.....|++
T Consensus 271 ~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~------~~~~~~~~~~~~i~~ 344 (582)
T 3b5x_A 271 SVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTLFGLMDLETERD------NGKYEAERVNGEVDV 344 (582)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCC------CCCCCCCCCCCeEEE
Confidence 7777777777777777665433221111 111111111111100 000011112346999
Q ss_pred EeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh----hcc
Q 008534 153 TDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLK 228 (562)
Q Consensus 153 ~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~----~~~ 228 (562)
+||+|+|. +.++++|+|+||+|++||+++|+||||||||||+++|+|. ++ +.+|+|.+||+++.+ .+|
T Consensus 345 ~~v~~~y~------~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~-~~-p~~G~i~~~g~~~~~~~~~~~~ 416 (582)
T 3b5x_A 345 KDVTFTYQ------GKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRF-YD-VDSGSICLDGHDVRDYKLTNLR 416 (582)
T ss_pred EEEEEEcC------CCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcC-CC-CCCCEEEECCEEhhhCCHHHHh
Confidence 99999982 1136799999999999999999999999999999999985 43 458999999998752 467
Q ss_pred CcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCC-------CccccccccCcccCCCChhHH
Q 008534 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL-------ERCQDTMIGGSFVRGVSGGER 301 (562)
Q Consensus 229 ~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~t~vg~~~~~~LSGGqr 301 (562)
++||||+|++.+|+. ||+|||.++.. + ..+ ++++.++++.+++ ++..||.+|.. +.+||||||
T Consensus 417 ~~i~~v~Q~~~l~~~-tv~eni~~~~~---~-~~~----~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~-~~~LSgGq~ 486 (582)
T 3b5x_A 417 RHFALVSQNVHLFND-TIANNIAYAAE---G-EYT----REQIEQAARQAHAMEFIENMPQGLDTVIGEN-GTSLSGGQR 486 (582)
T ss_pred cCeEEEcCCCccccc-cHHHHHhccCC---C-CCC----HHHHHHHHHHCCCHHHHHhCcccccchhcCC-CCcCCHHHH
Confidence 889999999999974 99999998631 1 112 2334555555554 34567777654 568999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChH
Q 008534 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKAS 381 (562)
Q Consensus 302 qRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~ 381 (562)
||++|||||+++|+||||||||++||+.++..+.+.|+++.+ |+|+|++||+++. + +.||+|++|++|++++.|+++
T Consensus 487 qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~-~-~~~d~i~~l~~G~i~~~g~~~ 563 (582)
T 3b5x_A 487 QRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQK-NKTVLVIAHRLST-I-EQADEILVVDEGEIIERGRHA 563 (582)
T ss_pred HHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcC-CCEEEEEecCHHH-H-HhCCEEEEEECCEEEEECCHH
Confidence 999999999999999999999999999999999999999864 8999999999864 3 579999999999999999999
Q ss_pred HHHH
Q 008534 382 EAMA 385 (562)
Q Consensus 382 el~~ 385 (562)
++++
T Consensus 564 ~l~~ 567 (582)
T 3b5x_A 564 DLLA 567 (582)
T ss_pred HHHh
Confidence 9864
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-48 Score=395.11 Aligned_cols=219 Identities=25% Similarity=0.423 Sum_probs=186.7
Q ss_pred eEEEEeEEEEEeecccCCccc---cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh
Q 008534 149 YLKFTDVTYKVILKGMTSSEE---KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~---~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~ 225 (562)
+|+++||+++|. ... +++|+||||+|++||+++|+||||||||||+|+|+|.+. +.+|+|.++|.++..
T Consensus 2 ~l~~~~l~~~y~------~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~--p~~G~I~~~g~~~~~ 73 (266)
T 2yz2_A 2 RIEVVNVSHIFH------RGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIE--PTSGDVLYDGERKKG 73 (266)
T ss_dssp CEEEEEEEEEES------TTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECCH
T ss_pred EEEEEEEEEEec------CCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCcEEEECCEECch
Confidence 489999999982 012 579999999999999999999999999999999999643 568999999998864
Q ss_pred -hccCcEEEEccCC-CCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCC--ccccccccCcccCCCChhHH
Q 008534 226 -SLKSKIGFVTQDD-VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE--RCQDTMIGGSFVRGVSGGER 301 (562)
Q Consensus 226 -~~~~~igyV~Q~~-~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~--~~~~t~vg~~~~~~LSGGqr 301 (562)
.+++.||||+|++ .+++.+||+||+.|+..... +..+..+++.++++.+||. +..++. +.+||||||
T Consensus 74 ~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~----~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~~~LSgGq~ 144 (266)
T 2yz2_A 74 YEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFY----PDRDPVPLVKKAMEFVGLDFDSFKDRV-----PFFLSGGEK 144 (266)
T ss_dssp HHHGGGEEEECSSGGGGCCCSSHHHHHHHTTTTTC----TTSCSHHHHHHHHHHTTCCHHHHTTCC-----GGGSCHHHH
T ss_pred HHhhhhEEEEeccchhhcCCCcHHHHHHHHHHhcC----CHHHHHHHHHHHHHHcCcCCcccccCC-----hhhCCHHHH
Confidence 3567899999996 45667899999998743211 1112245678899999998 766654 468999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChH
Q 008534 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKAS 381 (562)
Q Consensus 302 qRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~ 381 (562)
|||+|||||+.+|+||||||||+|||+.++..+++.|++++++|+|||++||++.. +..+||++++|++|++++.|+++
T Consensus 145 qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~-~~~~~d~v~~l~~G~i~~~g~~~ 223 (266)
T 2yz2_A 145 RRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIET-VINHVDRVVVLEKGKKVFDGTRM 223 (266)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTT-TGGGCSEEEEEETTEEEEEEEHH
T ss_pred HHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH-HHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999999999997679999999999864 56789999999999999999998
Q ss_pred HHHH
Q 008534 382 EAMA 385 (562)
Q Consensus 382 el~~ 385 (562)
++..
T Consensus 224 ~~~~ 227 (266)
T 2yz2_A 224 EFLE 227 (266)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 8764
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-48 Score=390.75 Aligned_cols=211 Identities=25% Similarity=0.432 Sum_probs=183.7
Q ss_pred EEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh--hc
Q 008534 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SL 227 (562)
Q Consensus 150 l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--~~ 227 (562)
|+++||+++| +. +|+||||+|++ |+++|+||||||||||+|+|+|.+. +.+|+|.++|.++.. ..
T Consensus 2 l~~~~l~~~y--------~~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~ 68 (240)
T 2onk_A 2 FLKVRAEKRL--------GN--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVK--PDRGEVRLNGADITPLPPE 68 (240)
T ss_dssp CEEEEEEEEE--------TT--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTSCTT
T ss_pred EEEEEEEEEe--------CC--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECCcCchh
Confidence 6899999998 12 59999999999 9999999999999999999999653 568999999998753 34
Q ss_pred cCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHH
Q 008534 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (562)
Q Consensus 228 ~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA 307 (562)
++.||||+|++.+|+.+||+||+.|+...+ . ....++++.++++.+||.+..+.. +.+|||||||||+||
T Consensus 69 ~~~i~~v~q~~~l~~~ltv~enl~~~~~~~---~--~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgGqkqRv~lA 138 (240)
T 2onk_A 69 RRGIGFVPQDYALFPHLSVYRNIAYGLRNV---E--RVERDRRVREMAEKLGIAHLLDRK-----PARLSGGERQRVALA 138 (240)
T ss_dssp TSCCBCCCSSCCCCTTSCHHHHHHTTCTTS---C--HHHHHHHHHHHHHTTTCTTTTTCC-----GGGSCHHHHHHHHHH
T ss_pred hCcEEEEcCCCccCCCCcHHHHHHHHHHHc---C--CchHHHHHHHHHHHcCCHHHhcCC-----hhhCCHHHHHHHHHH
Confidence 667999999999999999999999864321 1 112256788999999998776654 468999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHH
Q 008534 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (562)
Q Consensus 308 raLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~ 384 (562)
|||+.+|++|||||||+|||+.++..+++.|++++++ |+|||++||++. .+..+||+|++|++|++++.|+++++.
T Consensus 139 ral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 215 (240)
T 2onk_A 139 RALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLI-EAAMLADEVAVMLNGRIVEKGKLKELF 215 (240)
T ss_dssp HHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHH-HHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 9999999999999999999999999999999999754 999999999975 467889999999999999999998875
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-50 Score=453.45 Aligned_cols=351 Identities=24% Similarity=0.278 Sum_probs=248.9
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCccccccccCCCCcchhhhhhhhhhhcCCCcccccccceeeeeecccccccccccccch
Q 008534 9 SLARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSG 88 (562)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 88 (562)
+..++.+++.++..+...|.+...+|||+|+.+....++|.+..........+.....+...........-..+.-+..|
T Consensus 203 ~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 282 (598)
T 3qf4_B 203 KYFYENQRVLGQLNGIIEEDISGLTVIKLFTREEKEMEKFDRVNESLRKVGTKAQIFSGVLPPLMNMVNNLGFALISGFG 282 (598)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455677778888889999999999999999999888888766554333222111111110000000011112234577
Q ss_pred hhhhhhhhhhhhhhcccccCCCCcccccc----------------CCCCCCCCCccccccccCCCCCCCCCCCCceeEEE
Q 008534 89 AALSRASSASLGLSFSFTGFTMPPDEIAD----------------SKPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLKF 152 (562)
Q Consensus 89 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 152 (562)
+.++..+..+.|.++++..+......... .+.+...+.++..+. +.....+.....|++
T Consensus 283 ~~l~~~g~ls~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~-----~~~~~~~~~~~~i~~ 357 (598)
T 3qf4_B 283 GWLALKDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEILDLEEEKDD-----PDAVELREVRGEIEF 357 (598)
T ss_dssp HHHGGGTSSCHHHHHHHHTTTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCC-----SSCCCCCSCCCCEEE
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC-----CCCCCCCCCCCeEEE
Confidence 77777888888888887766543322111 111111111111110 000011122346999
Q ss_pred EeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh----hcc
Q 008534 153 TDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLK 228 (562)
Q Consensus 153 ~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~----~~~ 228 (562)
+||+|+|. +++++|+||||+|++||++||+||||||||||+++|+|. ++ +.+|+|.+||+++.+ .+|
T Consensus 358 ~~v~~~y~-------~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~-~~-p~~G~i~~~g~~i~~~~~~~~r 428 (598)
T 3qf4_B 358 KNVWFSYD-------KKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRF-YD-VDRGQILVDGIDIRKIKRSSLR 428 (598)
T ss_dssp EEEECCSS-------SSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTS-SC-CSEEEEEETTEEGGGSCHHHHH
T ss_pred EEEEEECC-------CCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcC-cC-CCCeEEEECCEEhhhCCHHHHH
Confidence 99999872 245799999999999999999999999999999999985 43 458999999999853 467
Q ss_pred CcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHH-----HHHHHHHHcCCCccccccccCcccCCCChhHHHH
Q 008534 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEK-----RAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (562)
Q Consensus 229 ~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~-----~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqR 303 (562)
++|+||+|++.+|+ .||+|||.++... .++++..+ ..++.++ .+++..+|.+|.. ..+||||||||
T Consensus 429 ~~i~~v~Q~~~lf~-~tv~eni~~~~~~-----~~~~~~~~~~~~~~~~~~~~--~~~~g~~t~~~~~-g~~LSgGq~Qr 499 (598)
T 3qf4_B 429 SSIGIVLQDTILFS-TTVKENLKYGNPG-----ATDEEIKEAAKLTHSDHFIK--HLPEGYETVLTDN-GEDLSQGQRQL 499 (598)
T ss_dssp HHEEEECTTCCCCS-SBHHHHHHSSSTT-----CCTTHHHHHTTTTTCHHHHH--TSTTGGGCBCHHH-HTTSCHHHHHH
T ss_pred hceEEEeCCCcccc-ccHHHHHhcCCCC-----CCHHHHHHHHHHhCCHHHHH--hccccccchhcCC-CCCCCHHHHHH
Confidence 88999999999997 5999999986321 11111111 1123333 3456778877643 46799999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHH
Q 008534 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (562)
Q Consensus 304 v~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el 383 (562)
|+|||||+++|+|||||||||+||+.++..+.+.|+++. +|+|+|++||+++. + ..||+|++|++|++++.|+++|+
T Consensus 500 v~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~-~-~~~d~i~~l~~G~i~~~g~~~~l 576 (598)
T 3qf4_B 500 LAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLM-EGKTSIIIAHRLNT-I-KNADLIIVLRDGEIVEMGKHDEL 576 (598)
T ss_dssp HHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHH-TTSEEEEESCCTTH-H-HHCSEEEEECSSSEEECSCHHHH
T ss_pred HHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH-H-HcCCEEEEEECCEEEEECCHHHH
Confidence 999999999999999999999999999999999999986 58999999999875 4 56999999999999999999998
Q ss_pred HH
Q 008534 384 MA 385 (562)
Q Consensus 384 ~~ 385 (562)
++
T Consensus 577 ~~ 578 (598)
T 3qf4_B 577 IQ 578 (598)
T ss_dssp HH
T ss_pred Hh
Confidence 74
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-50 Score=488.96 Aligned_cols=356 Identities=22% Similarity=0.276 Sum_probs=259.4
Q ss_pred hHHHHHHHHHHHHHHHHhhcCCCccccccccCCCCcchhhhhhhhhhhcCCCcccccccceeeeeecccccccccccccc
Q 008534 8 TSLARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSS 87 (562)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (562)
.+..++.++..++..+.++|.+.+.+|||+|+.+..+.++|.+........+.+.....+...........-.-+..++.
T Consensus 261 ~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (1321)
T 4f4c_A 261 STFAIRETLRYAKAGKVVEETISSIRTVVSLNGLRYELERYSTAVEEAKKAGVLKGLFLGISFGAMQASNFISFALAFYI 340 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566678888889999999999999999999999999999877766544333222111111000011111111223567
Q ss_pred hhhhhhhhhhhhhhhcccccCCCCcc----------------ccccCCCCCCCCCccccccccCCCCCCCCCCCCceeEE
Q 008534 88 GAALSRASSASLGLSFSFTGFTMPPD----------------EIADSKPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLK 151 (562)
Q Consensus 88 g~~~~~~~~~~~g~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 151 (562)
|+.++..+..+.|.++++..+..... ..+..+.+...+.++.++..... ..........|+
T Consensus 341 g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~---~~~~~~~~g~I~ 417 (1321)
T 4f4c_A 341 GVGWVHDGSLNFGDMLTTFSSVMMGSMALGLAGPQLAVLGTAQGAASGIYEVLDRKPVIDSSSKA---GRKDMKIKGDIT 417 (1321)
T ss_dssp HHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCCSSCSSSC---CCCCCCCCCCEE
T ss_pred HHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccccc---cccCCCCCCcEE
Confidence 78888888888887776654332111 11111222222222222211111 011112234699
Q ss_pred EEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh----hc
Q 008534 152 FTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SL 227 (562)
Q Consensus 152 ~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~----~~ 227 (562)
|+||+|+|+ ...++++|+||||+|++|+++||+||||||||||+++|.| +++ +.+|+|.+||.+++. .+
T Consensus 418 ~~nvsF~Y~-----~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~-~~~-~~~G~I~idG~~i~~~~~~~l 490 (1321)
T 4f4c_A 418 VENVHFTYP-----SRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLR-YYD-VLKGKITIDGVDVRDINLEFL 490 (1321)
T ss_dssp EEEEEECCS-----SSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTT-SSC-CSEEEEEETTEETTTSCHHHH
T ss_pred EEEeeeeCC-----CCCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhcc-ccc-cccCcccCCCccchhccHHHH
Confidence 999999983 2346789999999999999999999999999999999997 554 458999999999863 57
Q ss_pred cCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHH-----HHHHHHHcCCCccccccccCcccCCCChhHHH
Q 008534 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKR-----AIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (562)
Q Consensus 228 ~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~-----v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrq 302 (562)
|++||||+|+|.+|+ .||+|||.|+.. ..++++..+. +++.++. |++..||.+|++. ..|||||||
T Consensus 491 r~~i~~v~Q~~~Lf~-~TI~eNI~~g~~-----~~~~~~v~~a~~~a~l~~~i~~--lp~G~~T~vGe~G-~~LSGGQkQ 561 (1321)
T 4f4c_A 491 RKNVAVVSQEPALFN-CTIEENISLGKE-----GITREEMVAACKMANAEKFIKT--LPNGYNTLVGDRG-TQLSGGQKQ 561 (1321)
T ss_dssp HHHEEEECSSCCCCS-EEHHHHHHTTCT-----TCCHHHHHHHHHHTTCHHHHHH--STTTTSSEESSSS-CCCCHHHHH
T ss_pred hhcccccCCcceeeC-CchhHHHhhhcc-----cchHHHHHHHHHHccchhHHHc--CCCCCccEecCCC-CCCCHHHHH
Confidence 889999999999997 599999999742 1233322221 2333443 5889999999765 469999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHH
Q 008534 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (562)
Q Consensus 303 Rv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~e 382 (562)
||+|||||+++|+|||||||||+||+.++..+.+.|+++.+ |+|+|+|+|+++. .+.||+|++|++|+|++.|+|+|
T Consensus 562 RiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~-~~T~iiiaHrls~--i~~aD~Iivl~~G~ive~Gth~e 638 (1321)
T 4f4c_A 562 RIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAK-GRTTIIIAHRLST--IRNADLIISCKNGQVVEVGDHRA 638 (1321)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHT-TSEEEEECSCTTT--TTTCSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHhC-CCEEEEEcccHHH--HHhCCEEEEeeCCeeeccCCHHH
Confidence 99999999999999999999999999999999999999874 8999999999985 57899999999999999999999
Q ss_pred HHH
Q 008534 383 AMA 385 (562)
Q Consensus 383 l~~ 385 (562)
+++
T Consensus 639 L~~ 641 (1321)
T 4f4c_A 639 LMA 641 (1321)
T ss_dssp HHT
T ss_pred HHH
Confidence 974
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-48 Score=391.63 Aligned_cols=220 Identities=24% Similarity=0.298 Sum_probs=179.3
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
+|+++||+++| +++++|+||||+|++||+++|+||||||||||+++|+|....++.+|+|.++|.++..
T Consensus 3 ~l~~~~l~~~y--------~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~ 74 (250)
T 2d2e_A 3 QLEIRDLWASI--------DGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSP 74 (250)
T ss_dssp EEEEEEEEEEE--------TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCH
T ss_pred eEEEEeEEEEE--------CCEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCH
Confidence 58999999998 2457999999999999999999999999999999999962123568999999998752
Q ss_pred -h-ccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCC-ccccccccCcccCC-CChhHH
Q 008534 226 -S-LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRG-VSGGER 301 (562)
Q Consensus 226 -~-~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~~-LSGGqr 301 (562)
. .+..++||+|++.+|+.+||+||+.++............+..+++.++++.+||. +..++. +.+ ||||||
T Consensus 75 ~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~~~LSgGqk 149 (250)
T 2d2e_A 75 DERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRY-----LNEGFSGGEK 149 (250)
T ss_dssp HHHHHTTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSB-----TTCC----HH
T ss_pred HHHHhCcEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCC-----cccCCCHHHH
Confidence 1 2445999999999999999999999865311011112334456788999999994 666654 457 999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhc-CCEEEEEcCCeEEEecCh
Q 008534 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHK-FDKLILLGKGSLLYFGKA 380 (562)
Q Consensus 302 qRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~-~D~i~vL~~G~iv~~G~~ 380 (562)
|||+|||||+.+|+||||||||+|||+.++..+++.|++++++|+|||++||++.. +... ||+|++|++|++++.|++
T Consensus 150 Qrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~-~~~~~~d~v~~l~~G~i~~~g~~ 228 (250)
T 2d2e_A 150 KRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRI-LNYIQPDKVHVMMDGRVVATGGP 228 (250)
T ss_dssp HHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGG-GGTSCCSEEEEEETTEEEEEESH
T ss_pred HHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-HHHhcCCEEEEEECCEEEEEeCH
Confidence 99999999999999999999999999999999999999997679999999999764 5566 599999999999999998
Q ss_pred HH
Q 008534 381 SE 382 (562)
Q Consensus 381 ~e 382 (562)
+.
T Consensus 229 ~~ 230 (250)
T 2d2e_A 229 EL 230 (250)
T ss_dssp HH
T ss_pred HH
Confidence 73
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-50 Score=452.74 Aligned_cols=356 Identities=19% Similarity=0.237 Sum_probs=246.2
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCccccccccCCCCcchhhhhhhhhhhcCCCcccccccceeeeeecccccccccccccch
Q 008534 9 SLARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSG 88 (562)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 88 (562)
+..++.++...+.++...|.+...++||+|+.+....++|.+..........+.....+...........-..+.-++.|
T Consensus 191 ~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 270 (582)
T 3b60_A 191 SISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSISDPIIQLIASLALAFVLYAA 270 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556677778888889999999999999999999998888776655443221111000000000000001111223456
Q ss_pred hhhhhhhhhhhhhhcccccCCCCccccccCCCC----------CCCCCccccccccCCCCCCCCCCCCceeEEEEeEEEE
Q 008534 89 AALSRASSASLGLSFSFTGFTMPPDEIADSKPF----------SDDDIPEDIEAGTRERPKFQTEPTLPIYLKFTDVTYK 158 (562)
Q Consensus 89 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~nvs~~ 158 (562)
+.++..+..+.|.++++..+............. +..++.+.++..+...+.....+.....|+++||+|+
T Consensus 271 ~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~i~~~~v~~~ 350 (582)
T 3b60_A 271 SFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQEKDEGKRVIDRATGDLEFRNVTFT 350 (582)
T ss_dssp HSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSCCCCCBCCSCCCCCEEEEEEEEC
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCCCCCCCCCCCcEEEEEEEEE
Confidence 666666667777766665533221111000000 0000111111111000000011112346999999998
Q ss_pred EeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh----hccCcEEEE
Q 008534 159 VILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFV 234 (562)
Q Consensus 159 y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~----~~~~~igyV 234 (562)
|. ..++++|+|+||+|++||++||+||||||||||+++|+|.+ + +.+|+|.+||+++.+ .+|++|+||
T Consensus 351 y~------~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~-~-p~~G~i~~~g~~~~~~~~~~~~~~i~~v 422 (582)
T 3b60_A 351 YP------GREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFY-D-IDEGHILMDGHDLREYTLASLRNQVALV 422 (582)
T ss_dssp SS------SSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTT-C-CSEEEEEETTEETTTBCHHHHHHTEEEE
T ss_pred cC------CCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcc-C-CCCCeEEECCEEccccCHHHHHhhCeEE
Confidence 72 11267999999999999999999999999999999999854 3 458999999999853 457789999
Q ss_pred ccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCC-------CccccccccCcccCCCChhHHHHHHHH
Q 008534 235 TQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL-------ERCQDTMIGGSFVRGVSGGERKRVCIG 307 (562)
Q Consensus 235 ~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~t~vg~~~~~~LSGGqrqRv~IA 307 (562)
+|++.+|+. ||+|||.++.. + ..++ +++.++++.+++ ++..+|.+|.. +.+|||||||||+||
T Consensus 423 ~Q~~~l~~~-tv~eni~~~~~---~-~~~~----~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~-~~~LSgGq~qrl~iA 492 (582)
T 3b60_A 423 SQNVHLFND-TVANNIAYART---E-EYSR----EQIEEAARMAYAMDFINKMDNGLDTIIGEN-GVLLSGGQRQRIAIA 492 (582)
T ss_dssp CSSCCCCSS-BHHHHHHTTTT---S-CCCH----HHHHHHHHTTTCHHHHHHSTTGGGSBCCTT-SCSSCHHHHHHHHHH
T ss_pred ccCCcCCCC-CHHHHHhccCC---C-CCCH----HHHHHHHHHcCCHHHHHhccccccccccCC-CCCCCHHHHHHHHHH
Confidence 999999985 99999998631 1 1222 335555655554 34677777654 578999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHHH
Q 008534 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (562)
Q Consensus 308 raLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~~ 385 (562)
|||+++|+|||||||||+||+.++..+.+.|+++.+ |+|+|++||+++. + +.||+|++|++|++++.|+++++++
T Consensus 493 ral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~-~-~~~d~i~~l~~G~i~~~g~~~~l~~ 567 (582)
T 3b60_A 493 RALLRDSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRLST-I-EQADEIVVVEDGIIVERGTHSELLA 567 (582)
T ss_dssp HHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT-TSEEEEECSCGGG-T-TTCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC-CCEEEEEeccHHH-H-HhCCEEEEEECCEEEEecCHHHHHH
Confidence 999999999999999999999999999999999875 9999999999864 3 5799999999999999999999865
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-48 Score=397.57 Aligned_cols=221 Identities=23% Similarity=0.387 Sum_probs=184.3
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCC--h
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS--K 225 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~--~ 225 (562)
.+|+++||+++| +++++|+||||+|++||+++|+||||||||||+|+|+|.+. +.+|+|.++|.++. .
T Consensus 20 ~~l~~~~l~~~y--------~~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~~~~~~ 89 (279)
T 2ihy_A 20 MLIQLDQIGRMK--------QGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEP--ATSGTVNLFGKMPGKVG 89 (279)
T ss_dssp EEEEEEEEEEEE--------TTEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTBCCC---
T ss_pred ceEEEEeEEEEE--------CCEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCeEEEECCEEccccc
Confidence 369999999998 24579999999999999999999999999999999999653 56899999999875 2
Q ss_pred ----hccCcEEEEccCCCC-C-CCCCHHHHHHHHHhhCCC-CCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCCh
Q 008534 226 ----SLKSKIGFVTQDDVL-F-PHLTVKETLTYAALLRLP-NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSG 298 (562)
Q Consensus 226 ----~~~~~igyV~Q~~~l-~-~~lTV~enl~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSG 298 (562)
.+++.||||+|++.+ + +.+||+||+.++...... ......+..+++.++++.+||.+..++. +.+|||
T Consensus 90 ~~~~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LSg 164 (279)
T 2ihy_A 90 YSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQY-----IGYLST 164 (279)
T ss_dssp CCHHHHHTTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSB-----GGGSCH
T ss_pred CCHHHHcCcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCC-----hhhCCH
Confidence 356789999999764 2 356999999986321000 0011223456788999999998776654 468999
Q ss_pred hHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEE--EEEecCCChHHHhcCCEEEEEcCCeEEE
Q 008534 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTV--VTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (562)
Q Consensus 299 GqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tv--ii~tH~~~~~i~~~~D~i~vL~~G~iv~ 376 (562)
||||||+|||||+.+|+||||||||+|||+.++..+++.|++++++|+|| |++||++.. +..+||+|++|++|++++
T Consensus 165 GqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~-~~~~~d~v~~l~~G~i~~ 243 (279)
T 2ihy_A 165 GEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEE-ITANFSKILLLKDGQSIQ 243 (279)
T ss_dssp HHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGG-CCTTCCEEEEEETTEEEE
T ss_pred HHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHH-HHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999997669999 999999764 667899999999999999
Q ss_pred ecChHHHH
Q 008534 377 FGKASEAM 384 (562)
Q Consensus 377 ~G~~~el~ 384 (562)
.|+++++.
T Consensus 244 ~g~~~~~~ 251 (279)
T 2ihy_A 244 QGAVEDIL 251 (279)
T ss_dssp EEEHHHHC
T ss_pred ECCHHHHh
Confidence 99998763
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-48 Score=389.98 Aligned_cols=223 Identities=28% Similarity=0.353 Sum_probs=185.5
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh--
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~-- 225 (562)
.+|+++||+++| +++++|+||||+|++||+++|+||||||||||+|+|+|.+..++.+|+|.++|.++..
T Consensus 19 ~~l~~~~l~~~y--------~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~ 90 (267)
T 2zu0_C 19 HMLSIKDLHVSV--------EDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALS 90 (267)
T ss_dssp -CEEEEEEEEEE--------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSC
T ss_pred ceEEEEeEEEEE--------CCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCC
Confidence 369999999998 2467999999999999999999999999999999999964223468999999998742
Q ss_pred --hc-cCcEEEEccCCCCCCCCCHHHHHHHHHh-h---CCCCCccHHHHHHHHHHHHHHcCCC-ccccccccCcccC-CC
Q 008534 226 --SL-KSKIGFVTQDDVLFPHLTVKETLTYAAL-L---RLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVR-GV 296 (562)
Q Consensus 226 --~~-~~~igyV~Q~~~l~~~lTV~enl~~~~~-~---~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~-~L 296 (562)
.. ++.|+||+|++.+|+.+||.||+.+... . .........+..+++.++++.+||. +..++. +. +|
T Consensus 91 ~~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~~~L 165 (267)
T 2zu0_C 91 PEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRS-----VNVGF 165 (267)
T ss_dssp HHHHHHHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSB-----TTTTC
T ss_pred HHHHhhCCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCC-----cccCC
Confidence 12 3459999999999999999999987542 1 1011123444456788999999996 444543 44 59
Q ss_pred ChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhc-CCEEEEEcCCeEE
Q 008534 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHK-FDKLILLGKGSLL 375 (562)
Q Consensus 297 SGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~-~D~i~vL~~G~iv 375 (562)
||||||||+|||||+.+|+||||||||+|||+.++..+++.|++++++|+|||++||++.. +... ||+|++|++|+++
T Consensus 166 SgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~-~~~~~~d~v~~l~~G~i~ 244 (267)
T 2zu0_C 166 SGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRI-LDYIKPDYVHVLYQGRIV 244 (267)
T ss_dssp CHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGG-GGTSCCSEEEEEETTEEE
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHH-HHhhcCCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999999999987669999999999754 4455 8999999999999
Q ss_pred EecChHHHH
Q 008534 376 YFGKASEAM 384 (562)
Q Consensus 376 ~~G~~~el~ 384 (562)
+.|+++++.
T Consensus 245 ~~g~~~~~~ 253 (267)
T 2zu0_C 245 KSGDFTLVK 253 (267)
T ss_dssp EEECTTHHH
T ss_pred EEcCHHHHh
Confidence 999998865
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-48 Score=386.12 Aligned_cols=215 Identities=28% Similarity=0.512 Sum_probs=179.2
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh--
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~-- 225 (562)
..++++||+++|. +.++.+|+||||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++..
T Consensus 6 ~~~~~~~l~~~y~------~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~I~i~g~~~~~~~ 77 (247)
T 2ff7_A 6 HDITFRNIRFRYK------PDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI--PENGQVLIDGHDLALAD 77 (247)
T ss_dssp EEEEEEEEEEESS------TTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEETTTSC
T ss_pred CceeEEEEEEEeC------CCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEhhhCC
Confidence 3689999999871 124579999999999999999999999999999999999543 568999999999753
Q ss_pred --hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCcccc-------ccccCcccCCC
Q 008534 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQD-------TMIGGSFVRGV 296 (562)
Q Consensus 226 --~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~-------t~vg~~~~~~L 296 (562)
.+++.||||+|++.+|+ .||+||+.|+.. ... .+++.++++.+++.+..+ +.++ ..+.+|
T Consensus 78 ~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~-----~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~-~~~~~L 146 (247)
T 2ff7_A 78 PNWLRRQVGVVLQDNVLLN-RSIIDNISLANP-----GMS----VEKVIYAAKLAGAHDFISELREGYNTIVG-EQGAGL 146 (247)
T ss_dssp HHHHHHHEEEECSSCCCTT-SBHHHHHTTTCT-----TCC----HHHHHHHHHHHTCHHHHHTSTTGGGCBCS-TTTTCC
T ss_pred HHHHHhcEEEEeCCCcccc-ccHHHHHhccCC-----CCC----HHHHHHHHHHhChHHHHHhCcchhhhhhh-CCCCCC
Confidence 34677999999999997 699999988521 111 223556666677654433 3332 346789
Q ss_pred ChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEE
Q 008534 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (562)
Q Consensus 297 SGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~ 376 (562)
||||||||+|||||+.+|+||||||||+|||+.++..+++.|+++. +|+|||++||++.. + ..||+|++|++|++++
T Consensus 147 SgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~g~tviivtH~~~~-~-~~~d~v~~l~~G~i~~ 223 (247)
T 2ff7_A 147 SGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAHRLST-V-KNADRIIVMEKGKIVE 223 (247)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH-TTSEEEEECSSGGG-G-TTSSEEEEEETTEEEE
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHHH-H-HhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999995 59999999999764 4 5699999999999999
Q ss_pred ecChHHHH
Q 008534 377 FGKASEAM 384 (562)
Q Consensus 377 ~G~~~el~ 384 (562)
.|+++++.
T Consensus 224 ~g~~~~l~ 231 (247)
T 2ff7_A 224 QGKHKELL 231 (247)
T ss_dssp EECHHHHH
T ss_pred ECCHHHHH
Confidence 99998874
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-50 Score=486.85 Aligned_cols=351 Identities=22% Similarity=0.292 Sum_probs=240.9
Q ss_pred HHHHHHHHHHHHHhhcCCCccccccccCCCCcchhhhhhhhhhhcCCCcccccccceeeeeecccccccccccccchhhh
Q 008534 12 RTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSGAAL 91 (562)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 91 (562)
.+.++..+.....+.|.+...+|||+|+.+....++|.+.+........+.....+...........-+.+..++.|+.+
T Consensus 925 ~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l 1004 (1321)
T 4f4c_A 925 VKSASEFADSGKIAIEAIENVRTVQALAREDTFYENFCEKLDIPHKEAIKEAFIQGLSYGCASSVLYLLNTCAYRMGLAL 1004 (1321)
T ss_dssp TTTSSHHHHHHHHHHHHHHTHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 34456677777888899999999999999999999988777655433221111111110001111111112223455555
Q ss_pred hhhhhhhhhhhcc------cccCCCCccccc------------cCCCCCCCCCccccccccCCCCCCCCCCCCceeEEEE
Q 008534 92 SRASSASLGLSFS------FTGFTMPPDEIA------------DSKPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLKFT 153 (562)
Q Consensus 92 ~~~~~~~~g~~~~------~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 153 (562)
+..+..+.+.... +.....+...+. ..+.+...+..+..+... .....++....|+|+
T Consensus 1005 v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~----~~~~~~~~~g~I~f~ 1080 (1321)
T 4f4c_A 1005 IITDPPTMQPMRVLRVMYAITISTSTLGFATSYFPEYAKATFAGGIIFGMLRKISKIDSLS----LAGEKKKLYGKVIFK 1080 (1321)
T ss_dssp TSSSSCSSCHHHHHHHHHHHHTTTSSTTGGGGHHHHHHHHHHHHHHHHHHHHCCCSSCTTC----CCSBCCCCCCCEEEE
T ss_pred HhcCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccCCCcc----CCCCCCCCCCeEEEE
Confidence 4444332221111 111111111100 001111111111111100 001112223479999
Q ss_pred eEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh----hccC
Q 008534 154 DVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKS 229 (562)
Q Consensus 154 nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~----~~~~ 229 (562)
||+|+|+ .+.+.+||+||||+|+|||.+||+||||||||||+++|.| +++| .+|+|++||.|+.+ .+|+
T Consensus 1081 nVsf~Y~-----~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~r-l~~p-~~G~I~iDG~di~~i~~~~lR~ 1153 (1321)
T 4f4c_A 1081 NVRFAYP-----ERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLER-FYDT-LGGEIFIDGSEIKTLNPEHTRS 1153 (1321)
T ss_dssp EEEECCT-----TSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTT-SSCC-SSSEEEETTEETTTBCHHHHHT
T ss_pred EEEEeCC-----CCCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhc-CccC-CCCEEEECCEEhhhCCHHHHHh
Confidence 9999983 2345679999999999999999999999999999999996 6655 58999999999863 6899
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHc-------CCCccccccccCcccCCCChhHHH
Q 008534 230 KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINEL-------GLERCQDTMIGGSFVRGVSGGERK 302 (562)
Q Consensus 230 ~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~l-------gL~~~~~t~vg~~~~~~LSGGqrq 302 (562)
+|+||||||.+|+. ||+|||.|+.. |...++++ +.++++.. .|++.+||.+|+.. ..|||||||
T Consensus 1154 ~i~~V~Qdp~LF~g-TIreNI~~gld---~~~~sd~e----i~~Al~~a~l~~~I~~Lp~GldT~vge~G-~~LSgGQrQ 1224 (1321)
T 4f4c_A 1154 QIAIVSQEPTLFDC-SIAENIIYGLD---PSSVTMAQ----VEEAARLANIHNFIAELPEGFETRVGDRG-TQLSGGQKQ 1224 (1321)
T ss_dssp TEEEECSSCCCCSE-EHHHHHSSSSC---TTTSCHHH----HHHHHHHTTCHHHHHTSTTTTCSEETTTS-CSSCHHHHH
T ss_pred heEEECCCCEeeCc-cHHHHHhccCC---CCCCCHHH----HHHHHHHhCChHHHHcCcCCCCCEecCCC-cccCHHHHH
Confidence 99999999999975 99999998742 22334333 33333332 45788999998654 569999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHH
Q 008534 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (562)
Q Consensus 303 Rv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~e 382 (562)
|++|||||+++|+|||||||||+||++++..|.+.|+++. +|+|+|+|+|++++ ...||+|+||++|+|+++|+|+|
T Consensus 1225 riaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~-~~~TvI~IAHRLsT--i~~aD~I~Vld~G~IvE~Gth~e 1301 (1321)
T 4f4c_A 1225 RIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAR-EGRTCIVIAHRLNT--VMNADCIAVVSNGTIIEKGTHTQ 1301 (1321)
T ss_dssp HHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTS-SSSEEEEECSSSST--TTTCSEEEEESSSSEEEEECHHH
T ss_pred HHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHc-CCCEEEEeccCHHH--HHhCCEEEEEECCEEEEECCHHH
Confidence 9999999999999999999999999999999999998865 48999999999986 47799999999999999999999
Q ss_pred HHH
Q 008534 383 AMA 385 (562)
Q Consensus 383 l~~ 385 (562)
+++
T Consensus 1302 Ll~ 1304 (1321)
T 4f4c_A 1302 LMS 1304 (1321)
T ss_dssp HHH
T ss_pred HHh
Confidence 985
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-48 Score=393.10 Aligned_cols=223 Identities=30% Similarity=0.475 Sum_probs=180.1
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh--
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~-- 225 (562)
..|+++||++.|. ....+++|+||||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++..
T Consensus 15 ~~l~~~~l~~~y~-----~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~i~~~~ 87 (271)
T 2ixe_A 15 GLVKFQDVSFAYP-----NHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQ--PTGGKVLLDGEPLVQYD 87 (271)
T ss_dssp CCEEEEEEEECCT-----TCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEEGGGBC
T ss_pred ceEEEEEEEEEeC-----CCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCCEEEECCEEcccCC
Confidence 3699999999872 1012679999999999999999999999999999999999643 568999999998742
Q ss_pred --hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCC-CCccHHHHHHHHHHHHHHc--CCCccccccccCcccCCCChhH
Q 008534 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLP-NTLTKQQKEKRAIDVINEL--GLERCQDTMIGGSFVRGVSGGE 300 (562)
Q Consensus 226 --~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~-~~~~~~~~~~~v~~~l~~l--gL~~~~~t~vg~~~~~~LSGGq 300 (562)
.+++.|+||+|++.+|+ .||+|||.|+...... ...........+.++++.+ ||....+ ..+.+|||||
T Consensus 88 ~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~-----~~~~~LSgGq 161 (271)
T 2ixe_A 88 HHYLHTQVAAVGQEPLLFG-RSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVG-----ETGNQLSGGQ 161 (271)
T ss_dssp HHHHHHHEEEECSSCCCCS-SBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCC-----GGGTTSCHHH
T ss_pred HHHHhccEEEEecCCcccc-ccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhc-----CCcCCCCHHH
Confidence 34667999999999997 5999999986421100 0001111223456677777 5554433 3457899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecC
Q 008534 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (562)
Q Consensus 301 rqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (562)
||||+|||||+.+|+||||||||+|||+.++..+++.|+++.+ .|+|||++||++.. + ..||+|++|++|++++.|+
T Consensus 162 ~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~-~-~~~d~v~~l~~G~i~~~g~ 239 (271)
T 2ixe_A 162 RQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSL-A-ERAHHILFLKEGSVCEQGT 239 (271)
T ss_dssp HHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHH-H-TTCSEEEEEETTEEEEEEC
T ss_pred HHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHH-H-HhCCEEEEEECCEEEEECC
Confidence 9999999999999999999999999999999999999999864 48999999999753 4 4599999999999999999
Q ss_pred hHHHHH
Q 008534 380 ASEAMA 385 (562)
Q Consensus 380 ~~el~~ 385 (562)
++++..
T Consensus 240 ~~~l~~ 245 (271)
T 2ixe_A 240 HLQLME 245 (271)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 998764
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-47 Score=380.99 Aligned_cols=211 Identities=28% Similarity=0.409 Sum_probs=180.1
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhcc
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~ 228 (562)
+|+++||+++|. .++++|+||||+|++||+++|+||||||||||+++|+|.+. +.+|+|. ++
T Consensus 4 ~l~i~~l~~~y~-------~~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~I~---------~~ 65 (253)
T 2nq2_C 4 ALSVENLGFYYQ-------AENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHR--PIQGKIE---------VY 65 (253)
T ss_dssp EEEEEEEEEEET-------TTTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSC--CSEEEEE---------EC
T ss_pred eEEEeeEEEEeC-------CCCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEE---------Ee
Confidence 699999999981 14579999999999999999999999999999999999653 5689998 35
Q ss_pred CcEEEEccCCCCCCCCCHHHHHHHHHhhCCC-CCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHH
Q 008534 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRLP-NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (562)
Q Consensus 229 ~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA 307 (562)
+.||||+|++.+++.+||+||+.++...... .........+++.++++.+||.+..+.. +.+|||||||||+||
T Consensus 66 ~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgGq~qrv~lA 140 (253)
T 2nq2_C 66 QSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKRE-----FTSLSGGQRQLILIA 140 (253)
T ss_dssp SCEEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSB-----GGGSCHHHHHHHHHH
T ss_pred ccEEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCC-----hhhCCHHHHHHHHHH
Confidence 6799999999999889999999987532100 0011233456788999999998776654 468999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHH
Q 008534 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (562)
Q Consensus 308 raLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~ 384 (562)
|||+.+|+||||||||+|||+.++..+++.|++++++ |+|||++||++. .+..+||++++|++|+ ++.|+++++.
T Consensus 141 raL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~G~-~~~g~~~~~~ 216 (253)
T 2nq2_C 141 RAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPN-QVVAIANKTLLLNKQN-FKFGETRNIL 216 (253)
T ss_dssp HHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHH-HHHHHCSEEEEEETTE-EEEEEHHHHC
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEeCCe-EecCCHHHHh
Confidence 9999999999999999999999999999999999876 999999999975 4668899999999999 9999988763
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-47 Score=383.33 Aligned_cols=216 Identities=30% Similarity=0.483 Sum_probs=181.2
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
+|+++||+|+|. +++++|+||||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++..
T Consensus 1 ml~~~~l~~~y~-------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~ 71 (243)
T 1mv5_A 1 MLSARHVDFAYD-------DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQ--PTAGEITIDGQPIDNISL 71 (243)
T ss_dssp CEEEEEEEECSS-------SSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSC--CSBSCEEETTEESTTTSC
T ss_pred CEEEEEEEEEeC-------CCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEhhhCCH
Confidence 378999999871 24579999999999999999999999999999999999543 568999999998753
Q ss_pred -hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccc------cCcccCCCCh
Q 008534 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMI------GGSFVRGVSG 298 (562)
Q Consensus 226 -~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~v------g~~~~~~LSG 298 (562)
.+++.|+||+|++.+|+ .||+||+.|+... ... .+++.++++.+++.+..+... -+..+.+|||
T Consensus 72 ~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~----~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSg 142 (243)
T 1mv5_A 72 ENWRSQIGFVSQDSAIMA-GTIRENLTYGLEG----DYT----DEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISG 142 (243)
T ss_dssp SCCTTTCCEECCSSCCCC-EEHHHHTTSCTTS----CSC----HHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCH
T ss_pred HHHHhhEEEEcCCCcccc-ccHHHHHhhhccC----CCC----HHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCH
Confidence 35678999999999997 5999999875211 112 234667788888876554432 1234678999
Q ss_pred hHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEec
Q 008534 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (562)
Q Consensus 299 GqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G 378 (562)
||||||+|||||+.+|+||||||||+|||+.++..+++.|+++. +|+|||++||++.. + ..||+|++|++|++++.|
T Consensus 143 Gq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~-~-~~~d~v~~l~~G~i~~~g 219 (243)
T 1mv5_A 143 GQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRLST-I-VDADKIYFIEKGQITGSG 219 (243)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSHHH-H-HHCSEEEEEETTEECCCS
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCChHH-H-HhCCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999999999999999997 59999999999753 4 569999999999999999
Q ss_pred ChHHHHH
Q 008534 379 KASEAMA 385 (562)
Q Consensus 379 ~~~el~~ 385 (562)
+++++..
T Consensus 220 ~~~~~~~ 226 (243)
T 1mv5_A 220 KHNELVA 226 (243)
T ss_dssp CHHHHHH
T ss_pred CHHHHHh
Confidence 9988754
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-47 Score=379.56 Aligned_cols=207 Identities=27% Similarity=0.404 Sum_probs=181.2
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
+|+++||+++ ++|+||||+|++||+++|+||||||||||+|+|+|.+. +. |+|.++|.++..
T Consensus 4 ~l~~~~l~~~------------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~--p~-G~i~~~g~~~~~~~~ 68 (249)
T 2qi9_C 4 VMQLQDVAES------------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS--GK-GSIQFAGQPLEAWSA 68 (249)
T ss_dssp EEEEEEEEET------------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC--CE-EEEEETTEEGGGSCH
T ss_pred EEEEEceEEE------------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CC-eEEEECCEECCcCCH
Confidence 6899999862 58999999999999999999999999999999999653 56 999999998742
Q ss_pred -hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHH
Q 008534 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (562)
Q Consensus 226 -~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 304 (562)
.+++.|+||+|++.+|+.+||+||+.++... ... ++++.++++.+||.+..+.. +.+|||||||||
T Consensus 69 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~----~~~----~~~~~~~l~~~~l~~~~~~~-----~~~LSgGq~qrv 135 (249)
T 2qi9_C 69 TKLALHRAYLSQQQTPPFATPVWHYLTLHQHD----KTR----TELLNDVAGALALDDKLGRS-----TNQLSGGEWQRV 135 (249)
T ss_dssp HHHHHHEEEECSCCCCCTTCBHHHHHHTTCSS----TTC----HHHHHHHHHHTTCGGGTTSB-----GGGCCHHHHHHH
T ss_pred HHHhceEEEECCCCccCCCCcHHHHHHHhhcc----CCc----HHHHHHHHHHcCChhHhcCC-----hhhCCHHHHHHH
Confidence 3466799999999999999999999986311 111 45678899999998776654 568999999999
Q ss_pred HHHHHHhhCCC-------EEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEe
Q 008534 305 CIGNEIIINPS-------LLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (562)
Q Consensus 305 ~IAraLl~~P~-------iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~ 377 (562)
+|||||+.+|+ +|||||||+|||+.++..+++.|++++++|+|||++||++. .+..+||++++|++|++++.
T Consensus 136 ~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~-~~~~~~d~v~~l~~G~i~~~ 214 (249)
T 2qi9_C 136 RLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLN-HTLRHAHRAWLLKGGKMLAS 214 (249)
T ss_dssp HHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEETTEEEEE
T ss_pred HHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEe
Confidence 99999999999 99999999999999999999999999777999999999975 46688999999999999999
Q ss_pred cChHHHH
Q 008534 378 GKASEAM 384 (562)
Q Consensus 378 G~~~el~ 384 (562)
|+++++.
T Consensus 215 g~~~~~~ 221 (249)
T 2qi9_C 215 GRREEVL 221 (249)
T ss_dssp EEHHHHS
T ss_pred CCHHHHh
Confidence 9998863
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-48 Score=465.38 Aligned_cols=356 Identities=23% Similarity=0.299 Sum_probs=253.6
Q ss_pred hHHHHHHHHHHHHHHHHhhcCCCccccccccCCCCcchhhhhhhhhhhcCCCcccccccceeeeeecccccccccccccc
Q 008534 8 TSLARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSS 87 (562)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (562)
.+..++.++..++..+.++|.+...+|||+|+.+..+.++|.+........+.+.....+.+.........-..+..++.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~E~l~gi~~ikaf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (1284)
T 3g5u_A 233 SSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKELERYNNNLEEAKRLGIKKAITANISMGAAFLLIYASYALAFWY 312 (1284)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCCCCHHHHHTTCCCCSHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566778888999999999999999999999999999999987766654433322222221111111111112334567
Q ss_pred hhhhhhhhhhhhhhhcccccCCC----Cc------------cccccCCCCCCCCCccccccccCCCCCCCCCCCCceeEE
Q 008534 88 GAALSRASSASLGLSFSFTGFTM----PP------------DEIADSKPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLK 151 (562)
Q Consensus 88 g~~~~~~~~~~~g~~~~~~~~~~----~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 151 (562)
|+.++..+..+.|.++++..+.+ +. ...+..+.+...+.++....... .....+.....|+
T Consensus 313 g~~lv~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~---~~~~~~~~~g~i~ 389 (1284)
T 3g5u_A 313 GTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPNIEAFANARGAAYEVFKIIDNKPSIDSFSK---SGHKPDNIQGNLE 389 (1284)
T ss_dssp HHHHHHHSSSCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCSSCCS---SCCCCTTCCCCEE
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCcccc---cCCCCCCCCCeEE
Confidence 88777777777776654322111 10 00111122222221111111000 0001111234699
Q ss_pred EEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh----hc
Q 008534 152 FTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SL 227 (562)
Q Consensus 152 ~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~----~~ 227 (562)
|+||+|+|+ ...+.++|+||||+|++||++||+||||||||||+++|+|. ++ +.+|+|.+||.++.. .+
T Consensus 390 ~~~v~~~y~-----~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~-~~-~~~G~i~i~g~~i~~~~~~~~ 462 (1284)
T 3g5u_A 390 FKNIHFSYP-----SRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRL-YD-PLDGMVSIDGQDIRTINVRYL 462 (1284)
T ss_dssp EEEEEECCS-----STTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTS-SC-CSEEEEEETTEEGGGSCHHHH
T ss_pred EEEEEEEcC-----CCCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCC-CC-CCCeEEEECCEEHHhCCHHHH
Confidence 999999983 22345799999999999999999999999999999999984 44 458999999999753 56
Q ss_pred cCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHH-----HHHHHHHHcCCCccccccccCcccCCCChhHHH
Q 008534 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEK-----RAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (562)
Q Consensus 228 ~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~-----~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrq 302 (562)
|++||||+|++.+|+. ||+|||.|+... .+.++..+ .+++.++. +++..+|.+|.. +.+|||||||
T Consensus 463 r~~i~~v~Q~~~l~~~-ti~eNi~~g~~~-----~~~~~~~~~~~~~~~~~~i~~--l~~g~~t~~~~~-g~~LSgGq~Q 533 (1284)
T 3g5u_A 463 REIIGVVSQEPVLFAT-TIAENIRYGRED-----VTMDEIEKAVKEANAYDFIMK--LPHQFDTLVGER-GAQLSGGQKQ 533 (1284)
T ss_dssp HHHEEEECSSCCCCSS-CHHHHHHHHCSS-----CCHHHHHHHHHHTTCHHHHHH--STTGGGCCCSSS-SCSSCHHHHH
T ss_pred HhheEEEcCCCccCCc-cHHHHHhcCCCC-----CCHHHHHHHHHHhCcHHHHHh--ccccccccccCC-CCccCHHHHH
Confidence 7889999999999975 999999998421 22222222 12344443 467788988754 4679999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHH
Q 008534 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (562)
Q Consensus 303 Rv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~e 382 (562)
||+|||||+++|+|||||||||+||+.++..+.+.|+++. +|+|+|+|+|+++. + ..||+|++|++|++++.|++++
T Consensus 534 riaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~-i-~~~d~i~vl~~G~i~~~g~~~~ 610 (1284)
T 3g5u_A 534 RIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAR-EGRTTIVIAHRLST-V-RNADVIAGFDGGVIVEQGNHDE 610 (1284)
T ss_dssp HHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHH-TTSEEEEECSCHHH-H-TTCSEEEECSSSCCCCEECHHH
T ss_pred HHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH-H-HcCCEEEEEECCEEEEECCHHH
Confidence 9999999999999999999999999999999999998875 48999999999864 4 5699999999999999999999
Q ss_pred HHH
Q 008534 383 AMA 385 (562)
Q Consensus 383 l~~ 385 (562)
+++
T Consensus 611 l~~ 613 (1284)
T 3g5u_A 611 LMR 613 (1284)
T ss_dssp HHH
T ss_pred HHh
Confidence 874
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-46 Score=378.40 Aligned_cols=215 Identities=30% Similarity=0.484 Sum_probs=178.0
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
.|+++||+|+|. ....+++|+||||+|++||+++|+||||||||||+++|+|.+. + +|+|.++|.++..
T Consensus 17 ~l~i~~l~~~y~-----~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~-~G~I~i~g~~i~~~~~ 88 (260)
T 2ghi_A 17 NIEFSDVNFSYP-----KQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYD--A-EGDIKIGGKNVNKYNR 88 (260)
T ss_dssp CEEEEEEEECCT-----TCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--C-EEEEEETTEEGGGBCH
T ss_pred eEEEEEEEEEeC-----CCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCC--C-CeEEEECCEEhhhcCH
Confidence 699999999872 1112579999999999999999999999999999999999653 4 7999999998742
Q ss_pred -hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCC-------CccccccccCcccCCCC
Q 008534 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL-------ERCQDTMIGGSFVRGVS 297 (562)
Q Consensus 226 -~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~t~vg~~~~~~LS 297 (562)
.+++.|+||+|++.+|+ .||+||+.|+.. .... +++.++++.+++ ++..++.++ ..+.+||
T Consensus 89 ~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~-----~~~~----~~~~~~l~~~~l~~~~~~l~~~~~~~~~-~~~~~LS 157 (260)
T 2ghi_A 89 NSIRSIIGIVPQDTILFN-ETIKYNILYGKL-----DATD----EEVIKATKSAQLYDFIEALPKKWDTIVG-NKGMKLS 157 (260)
T ss_dssp HHHHTTEEEECSSCCCCS-EEHHHHHHTTCT-----TCCH----HHHHHHHHHTTCHHHHHTSTTGGGCEES-SSSBCCC
T ss_pred HHHhccEEEEcCCCcccc-cCHHHHHhccCC-----CCCH----HHHHHHHHHhCCHHHHHhcccccccccc-CCcCcCC
Confidence 35678999999999996 599999998531 1111 234455555554 444555543 3467899
Q ss_pred hhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEe
Q 008534 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (562)
Q Consensus 298 GGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~ 377 (562)
|||||||+|||||+.+|+||||||||+|||+.++..+++.|+++.+ |+|||++||++.. + ..||+|++|++|++++.
T Consensus 158 gGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~-~~tviivtH~~~~-~-~~~d~i~~l~~G~i~~~ 234 (260)
T 2ghi_A 158 GGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRK-NRTLIIIAHRLST-I-SSAESIILLNKGKIVEK 234 (260)
T ss_dssp HHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTT-TSEEEEECSSGGG-S-TTCSEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHH-H-HhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999999864 8999999999864 4 56999999999999999
Q ss_pred cChHHHHH
Q 008534 378 GKASEAMA 385 (562)
Q Consensus 378 G~~~el~~ 385 (562)
|+++++..
T Consensus 235 g~~~~l~~ 242 (260)
T 2ghi_A 235 GTHKDLLK 242 (260)
T ss_dssp ECHHHHHH
T ss_pred CCHHHHHh
Confidence 99998764
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-46 Score=369.03 Aligned_cols=202 Identities=22% Similarity=0.378 Sum_probs=171.9
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhc
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~ 227 (562)
..|+++||+++| ++ ++|+||||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++. ..
T Consensus 9 ~~l~~~~ls~~y--------~~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~~~-~~ 76 (214)
T 1sgw_A 9 SKLEIRDLSVGY--------DK-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK--PLKGEIIYNGVPIT-KV 76 (214)
T ss_dssp CEEEEEEEEEES--------SS-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEEGG-GG
T ss_pred ceEEEEEEEEEe--------CC-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEhh-hh
Confidence 379999999987 24 79999999999999999999999999999999999653 56899999999876 45
Q ss_pred cCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHH
Q 008534 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (562)
Q Consensus 228 ~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA 307 (562)
++.|+||+|++.+|+.+||+||+.++...... . .. .+++.++++.+||.+. +. .+.+|||||||||+||
T Consensus 77 ~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~-~---~~-~~~~~~~l~~~gl~~~-~~-----~~~~LSgGqkqrv~la 145 (214)
T 1sgw_A 77 KGKIFFLPEEIIVPRKISVEDYLKAVASLYGV-K---VN-KNEIMDALESVEVLDL-KK-----KLGELSQGTIRRVQLA 145 (214)
T ss_dssp GGGEEEECSSCCCCTTSBHHHHHHHHHHHTTC-C---CC-HHHHHHHHHHTTCCCT-TS-----BGGGSCHHHHHHHHHH
T ss_pred cCcEEEEeCCCcCCCCCCHHHHHHHHHHhcCC-c---hH-HHHHHHHHHHcCCCcC-CC-----ChhhCCHHHHHHHHHH
Confidence 77899999999999999999999987543210 1 11 3467889999999765 54 3578999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeE
Q 008534 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374 (562)
Q Consensus 308 raLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~i 374 (562)
|||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||++.. +..+||+|+++ .|+|
T Consensus 146 raL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~-~~~~~d~v~~~-~~~~ 210 (214)
T 1sgw_A 146 STLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELS-YCDVNENLHKY-STKI 210 (214)
T ss_dssp HHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCT-TSSEEEEGGGG-BC--
T ss_pred HHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-HHHhCCEEEEe-CCcc
Confidence 99999999999999999999999999999999997668999999999864 66778887755 4554
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-45 Score=372.84 Aligned_cols=211 Identities=24% Similarity=0.282 Sum_probs=178.9
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh-hc
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-SL 227 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~-~~ 227 (562)
+|+++||+++|... ...+++|+|+||+|+ |++++|+||||||||||+++|+|.+ | .+|+|.++|.++.. ..
T Consensus 1 ml~~~~l~~~y~~~----~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~--p-~~G~I~~~g~~~~~~~~ 72 (263)
T 2pjz_A 1 MIQLKNVGITLSGK----GYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL--P-YSGNIFINGMEVRKIRN 72 (263)
T ss_dssp CEEEEEEEEEEEEE----TTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS--C-CEEEEEETTEEGGGCSC
T ss_pred CEEEEEEEEEeCCC----CccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC--C-CCcEEEECCEECcchHH
Confidence 37899999998310 011579999999999 9999999999999999999999954 4 48999999998742 12
Q ss_pred cCcEE-EEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCC-ccccccccCcccCCCChhHHHHHH
Q 008534 228 KSKIG-FVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVSGGERKRVC 305 (562)
Q Consensus 228 ~~~ig-yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~~LSGGqrqRv~ 305 (562)
++.|+ ||+|++.+ .+||+||+.++.... .. ..+++.++++.++|. +..++. +.+|||||||||+
T Consensus 73 ~~~i~~~v~Q~~~l--~~tv~enl~~~~~~~---~~----~~~~~~~~l~~~gl~~~~~~~~-----~~~LSgGqkqRv~ 138 (263)
T 2pjz_A 73 YIRYSTNLPEAYEI--GVTVNDIVYLYEELK---GL----DRDLFLEMLKALKLGEEILRRK-----LYKLSAGQSVLVR 138 (263)
T ss_dssp CTTEEECCGGGSCT--TSBHHHHHHHHHHHT---CC----CHHHHHHHHHHTTCCGGGGGSB-----GGGSCHHHHHHHH
T ss_pred hhheEEEeCCCCcc--CCcHHHHHHHhhhhc---ch----HHHHHHHHHHHcCCChhHhcCC-----hhhCCHHHHHHHH
Confidence 56799 99999987 689999999875432 11 134578899999998 766654 5689999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCC-EEEEEcCCeEEEecChHHHH
Q 008534 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFD-KLILLGKGSLLYFGKASEAM 384 (562)
Q Consensus 306 IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D-~i~vL~~G~iv~~G~~~el~ 384 (562)
|||||+.+|++|||||||+|||+.++..+++.|+++++ |||++||++.. +..+|| ++++|++|++++.|+++++.
T Consensus 139 lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~---tviivtHd~~~-~~~~~d~~i~~l~~G~i~~~g~~~~l~ 214 (263)
T 2pjz_A 139 TSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGK---EGILVTHELDM-LNLYKEYKAYFLVGNRLQGPISVSELL 214 (263)
T ss_dssp HHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS---EEEEEESCGGG-GGGCTTSEEEEEETTEEEEEEEHHHHH
T ss_pred HHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcC---cEEEEEcCHHH-HHHhcCceEEEEECCEEEEecCHHHHH
Confidence 99999999999999999999999999999999998753 99999999754 667899 99999999999999999875
Q ss_pred H
Q 008534 385 A 385 (562)
Q Consensus 385 ~ 385 (562)
+
T Consensus 215 ~ 215 (263)
T 2pjz_A 215 E 215 (263)
T ss_dssp T
T ss_pred h
Confidence 3
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-45 Score=364.47 Aligned_cols=205 Identities=28% Similarity=0.420 Sum_probs=166.1
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhc
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~ 227 (562)
..|+++||+++|. .+++++|+||||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|
T Consensus 5 ~~l~~~~l~~~y~------~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g------- 69 (229)
T 2pze_A 5 TEVVMENVTAFWE------EGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE--PSEGKIKHSG------- 69 (229)
T ss_dssp EEEEEEEEEECSS------TTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEECS-------
T ss_pred ceEEEEEEEEEeC------CCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc--CCccEEEECC-------
Confidence 3699999999872 124679999999999999999999999999999999999653 5689999998
Q ss_pred cCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCc-------cccccccCcccCCCChhH
Q 008534 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-------CQDTMIGGSFVRGVSGGE 300 (562)
Q Consensus 228 ~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~t~vg~~~~~~LSGGq 300 (562)
+|+||+|++.+|+. ||+||+.|+.. .... +..+.++.+++.+ ..++.++ ..+.+|||||
T Consensus 70 --~i~~v~q~~~~~~~-tv~enl~~~~~------~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~LSgGq 135 (229)
T 2pze_A 70 --RISFCSQFSWIMPG-TIKENIIFGVS------YDEY----RYRSVIKACQLEEDISKFAEKDNIVLG-EGGITLSGGQ 135 (229)
T ss_dssp --CEEEECSSCCCCSB-CHHHHHHTTSC------CCHH----HHHHHHHHTTCHHHHTTSTTGGGSCBC-TTCTTSCHHH
T ss_pred --EEEEEecCCcccCC-CHHHHhhccCC------cChH----HHHHHHHHhCcHHHHHhCccccccccc-CCCCcCCHHH
Confidence 49999999999985 99999998531 1111 1222333333322 2233333 3357899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecC
Q 008534 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQM-LQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (562)
Q Consensus 301 rqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~-L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (562)
||||+|||||+.+|+||||||||+|||+.++..+++. ++++. +|+|||++||++.. + ..||+|++|++|++++.|+
T Consensus 136 kqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~-~~~tvi~vtH~~~~-~-~~~d~v~~l~~G~i~~~g~ 212 (229)
T 2pze_A 136 RARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKMEH-L-KKADKILILHEGSSYFYGT 212 (229)
T ss_dssp HHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCT-TTSEEEEECCCHHH-H-HHCSEEEEEETTEEEEEEC
T ss_pred HHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhh-CCCEEEEEcCChHH-H-HhCCEEEEEECCEEEEECC
Confidence 9999999999999999999999999999999999997 45554 48999999999753 4 4699999999999999999
Q ss_pred hHHHH
Q 008534 380 ASEAM 384 (562)
Q Consensus 380 ~~el~ 384 (562)
++++.
T Consensus 213 ~~~~~ 217 (229)
T 2pze_A 213 FSELQ 217 (229)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98875
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-45 Score=364.50 Aligned_cols=211 Identities=23% Similarity=0.397 Sum_probs=166.3
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhcc
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~ 228 (562)
+|+++||+++|. ..++++|+||||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|
T Consensus 3 ~l~~~~l~~~y~------~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g-------- 66 (237)
T 2cbz_A 3 SITVRNATFTWA------RSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD--KVEGHVAIKG-------- 66 (237)
T ss_dssp CEEEEEEEEESC------TTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSE--EEEEEEEECS--------
T ss_pred eEEEEEEEEEeC------CCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECC--------
Confidence 489999999972 114679999999999999999999999999999999999543 5689999998
Q ss_pred CcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCC-ccccccccCcccCCCChhHHHHHHHH
Q 008534 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVSGGERKRVCIG 307 (562)
Q Consensus 229 ~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~~LSGGqrqRv~IA 307 (562)
.|+||+|++.++ .+||+|||.++... .. ..........++.+.+++. ...++.++ ..+.+|||||||||+||
T Consensus 67 -~i~~v~Q~~~~~-~~tv~enl~~~~~~--~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~LSgGqkqRv~lA 139 (237)
T 2cbz_A 67 -SVAYVPQQAWIQ-NDSLRENILFGCQL--EE--PYYRSVIQACALLPDLEILPSGDRTEIG-EKGVNLSGGQKQRVSLA 139 (237)
T ss_dssp -CEEEECSSCCCC-SEEHHHHHHTTSCC--CT--THHHHHHHHTTCHHHHTTSTTGGGSEES-TTSBCCCHHHHHHHHHH
T ss_pred -EEEEEcCCCcCC-CcCHHHHhhCcccc--CH--HHHHHHHHHHhhHHHHHhcccccccccc-CCCCCCCHHHHHHHHHH
Confidence 399999998765 68999999986321 11 1111111111122233332 22233332 45678999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH---HHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHH
Q 008534 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQ---DIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (562)
Q Consensus 308 raLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~---~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~ 384 (562)
|||+.+|+||||||||+|||+.++..+++.|. ++. +|+|||++||++.. + ..||+|++|++|++++.|+++++.
T Consensus 140 raL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~-~~~tviivtH~~~~-~-~~~d~v~~l~~G~i~~~g~~~~~~ 216 (237)
T 2cbz_A 140 RAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGML-KNKTRILVTHSMSY-L-PQVDVIIVMSGGKISEMGSYQELL 216 (237)
T ss_dssp HHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTT-TTSEEEEECSCSTT-G-GGSSEEEEEETTEEEEEECHHHHH
T ss_pred HHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhc-CCCEEEEEecChHH-H-HhCCEEEEEeCCEEEEeCCHHHHh
Confidence 99999999999999999999999999999995 443 48999999999875 4 579999999999999999999875
Q ss_pred H
Q 008534 385 A 385 (562)
Q Consensus 385 ~ 385 (562)
.
T Consensus 217 ~ 217 (237)
T 2cbz_A 217 A 217 (237)
T ss_dssp H
T ss_pred h
Confidence 4
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-46 Score=393.19 Aligned_cols=215 Identities=23% Similarity=0.365 Sum_probs=180.7
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh--
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~-- 225 (562)
..|+++||+++|. ...+.+|+||||+|++||+++|+|||||||||||++|+|.+ + .+|+|.++|+++..
T Consensus 18 ~~i~~~~l~~~y~------~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~--~-~~G~I~i~G~~i~~~~ 88 (390)
T 3gd7_A 18 GQMTVKDLTAKYT------EGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLL--N-TEGEIQIDGVSWDSIT 88 (390)
T ss_dssp CCEEEEEEEEESS------SSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCS--E-EEEEEEESSCBTTSSC
T ss_pred CeEEEEEEEEEec------CCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCC--C-CCeEEEECCEECCcCC
Confidence 4699999999982 23567999999999999999999999999999999999954 3 58999999998753
Q ss_pred --hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccC------cccCCCC
Q 008534 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGG------SFVRGVS 297 (562)
Q Consensus 226 --~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~------~~~~~LS 297 (562)
.+++.||||||++.+|+ +||+||+.+.. ... .+++.++++.++|.+..+..+.. .....||
T Consensus 89 ~~~~rr~ig~v~Q~~~lf~-~tv~enl~~~~------~~~----~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LS 157 (390)
T 3gd7_A 89 LEQWRKAFGVIPQKVFIFS-GTFRKNLDPNA------AHS----DQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLS 157 (390)
T ss_dssp HHHHHHTEEEESCCCCCCS-EEHHHHHCTTC------CSC----HHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSC
T ss_pred hHHHhCCEEEEcCCcccCc-cCHHHHhhhcc------ccC----HHHHHHHHHHhCCHHHHhhcccccccccccccccCC
Confidence 35678999999999997 69999997421 111 24567888899987665554321 1123499
Q ss_pred hhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEe
Q 008534 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (562)
Q Consensus 298 GGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~ 377 (562)
|||||||+|||||+.+|+||||||||++||+.++..+.+.|+++. .++|+|++||++. ....||+|++|++|+|++.
T Consensus 158 GGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~-~~~tvi~vtHd~e--~~~~aDri~vl~~G~i~~~ 234 (390)
T 3gd7_A 158 HGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAF-ADCTVILCEARIE--AMLECDQFLVIEENKVRQY 234 (390)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTT-TTSCEEEECSSSG--GGTTCSEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcCHH--HHHhCCEEEEEECCEEEEE
Confidence 999999999999999999999999999999999999999999864 4899999999964 3467999999999999999
Q ss_pred cChHHHHH
Q 008534 378 GKASEAMA 385 (562)
Q Consensus 378 G~~~el~~ 385 (562)
|+++++..
T Consensus 235 g~~~el~~ 242 (390)
T 3gd7_A 235 DSILELYH 242 (390)
T ss_dssp SSHHHHHH
T ss_pred CCHHHHHh
Confidence 99999864
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-46 Score=446.87 Aligned_cols=221 Identities=25% Similarity=0.479 Sum_probs=184.0
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh--
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~-- 225 (562)
..++++||+|+|+ ...+.++|+||||+|++||++||+||||||||||+++|+|. ++ +.+|+|.+||+++..
T Consensus 1029 g~i~~~~v~~~y~-----~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~-~~-p~~G~I~i~g~~i~~~~ 1101 (1284)
T 3g5u_A 1029 GNVQFSGVVFNYP-----TRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERF-YD-PMAGSVFLDGKEIKQLN 1101 (1284)
T ss_dssp CCEEEEEEEBCCS-----CGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTS-SC-CSEEEEESSSSCTTSSC
T ss_pred CcEEEEEEEEECC-----CCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcC-cC-CCCCEEEECCEEcccCC
Confidence 4699999999983 12245799999999999999999999999999999999984 44 458999999999863
Q ss_pred --hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHH-----HHHHHHHcCCCccccccccCcccCCCCh
Q 008534 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKR-----AIDVINELGLERCQDTMIGGSFVRGVSG 298 (562)
Q Consensus 226 --~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~-----v~~~l~~lgL~~~~~t~vg~~~~~~LSG 298 (562)
.+|++|+||||++.+|+ .||+|||.++...+ ..+.++..+. +++.++ .+++.+||.+|.. +..|||
T Consensus 1102 ~~~~r~~i~~v~Q~~~l~~-~ti~eNi~~~~~~~---~~~~~~i~~~~~~~~~~~~i~--~l~~gldt~vge~-G~~LSg 1174 (1284)
T 3g5u_A 1102 VQWLRAQLGIVSQEPILFD-CSIAENIAYGDNSR---VVSYEEIVRAAKEANIHQFID--SLPDKYNTRVGDK-GTQLSG 1174 (1284)
T ss_dssp HHHHTTSCEEEESSCCCCS-SBHHHHHTCCCSSC---CCCHHHHHHHHHHHTCHHHHS--STTTGGGCBCSTT-SCSSCH
T ss_pred HHHHHhceEEECCCCcccc-ccHHHHHhccCCCC---CCCHHHHHHHHHHhCcHHHHH--hCccccccccCCC-CCccCH
Confidence 46888999999999996 69999999864221 1223222221 222332 4577889999854 567999
Q ss_pred hHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEec
Q 008534 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (562)
Q Consensus 299 GqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G 378 (562)
||||||+|||||+++|+||||||||+|||+.++..|.+.|+++. +|+|||+|+||++. + ..||||++|++|++++.|
T Consensus 1175 Gq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~-~~~tvi~isH~l~~-i-~~~dri~vl~~G~i~~~g 1251 (1284)
T 3g5u_A 1175 GQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAR-EGRTCIVIAHRLST-I-QNADLIVVIQNGKVKEHG 1251 (1284)
T ss_dssp HHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHS-SSSCEEEECSCTTG-G-GSCSEEEEEETBEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhC-CCCEEEEEecCHHH-H-HcCCEEEEEECCEEEEEC
Confidence 99999999999999999999999999999999999999998864 58999999999875 4 669999999999999999
Q ss_pred ChHHHHH
Q 008534 379 KASEAMA 385 (562)
Q Consensus 379 ~~~el~~ 385 (562)
+|+++++
T Consensus 1252 ~~~~l~~ 1258 (1284)
T 3g5u_A 1252 THQQLLA 1258 (1284)
T ss_dssp CHHHHHH
T ss_pred CHHHHHh
Confidence 9999875
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-42 Score=354.58 Aligned_cols=200 Identities=29% Similarity=0.459 Sum_probs=152.1
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhcc
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~ 228 (562)
.|+++||+|. .+++|+||||+|++|++++|+||||||||||+++|+|.+. +.+|+|.++|
T Consensus 40 ~l~~~~l~~~----------~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g-------- 99 (290)
T 2bbs_A 40 SLSFSNFSLL----------GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE--PSEGKIKHSG-------- 99 (290)
T ss_dssp --------------------CCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSC--EEEEEEECCS--------
T ss_pred eEEEEEEEEc----------CceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECC--------
Confidence 6999999984 2469999999999999999999999999999999999643 5689999998
Q ss_pred CcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCc-------cccccccCcccCCCChhHH
Q 008534 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-------CQDTMIGGSFVRGVSGGER 301 (562)
Q Consensus 229 ~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~t~vg~~~~~~LSGGqr 301 (562)
+|+||+|++.+|+. ||+||+. +. .. ... .+.+.++.+++.+ ..++.++ ..+.+||||||
T Consensus 100 -~i~~v~Q~~~l~~~-tv~enl~-~~--~~----~~~----~~~~~~~~~~l~~~l~~~~~~~~~~~~-~~~~~LSgGq~ 165 (290)
T 2bbs_A 100 -RISFCSQNSWIMPG-TIKENII-GV--SY----DEY----RYRSVIKACQLEEDISKFAEKDNIVLG-EGGITLSGGQR 165 (290)
T ss_dssp -CEEEECSSCCCCSS-BHHHHHH-TT--CC----CHH----HHHHHHHHTTCHHHHHTSTTGGGCBC-----CCCCHHHH
T ss_pred -EEEEEeCCCccCcc-cHHHHhh-Cc--cc----chH----HHHHHHHHhChHHHHHhccccccchhc-CccCcCCHHHH
Confidence 49999999999985 9999998 42 11 111 1223334444432 2233333 23578999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHH-HHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecCh
Q 008534 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQML-QDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 380 (562)
Q Consensus 302 qRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L-~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~ 380 (562)
|||+|||||+.+|+||||||||+|||+.++..+++.+ +++. +|+|||++||++.. + ..||+|++|++|++++.|++
T Consensus 166 QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~-~~~tviivtHd~~~-~-~~~d~i~~l~~G~i~~~g~~ 242 (290)
T 2bbs_A 166 ARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKMEH-L-KKADKILILHEGSSYFYGTF 242 (290)
T ss_dssp HHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCT-TTSEEEEECCCHHH-H-HHSSEEEEEETTEEEEEECH
T ss_pred HHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhh-CCCEEEEEecCHHH-H-HcCCEEEEEECCeEEEeCCH
Confidence 9999999999999999999999999999999999974 4554 48999999999753 4 56999999999999999999
Q ss_pred HHHHH
Q 008534 381 SEAMA 385 (562)
Q Consensus 381 ~el~~ 385 (562)
+++..
T Consensus 243 ~~l~~ 247 (290)
T 2bbs_A 243 SELQN 247 (290)
T ss_dssp HHHHH
T ss_pred HHHhh
Confidence 98753
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-38 Score=351.57 Aligned_cols=205 Identities=23% Similarity=0.304 Sum_probs=174.0
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhc
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~ 227 (562)
..++++|+++.| +...|+++||+|++||+++|+||||||||||+++|+|.+. +.+|+|.+
T Consensus 356 ~~l~~~~l~~~~---------~~~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~--p~~G~I~~--------- 415 (607)
T 3bk7_A 356 TLVEYPRLVKDY---------GSFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEE--PTEGKVEW--------- 415 (607)
T ss_dssp EEEEECCEEEEC---------SSCEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSC--CSBSCCCC---------
T ss_pred eEEEEeceEEEe---------cceEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEE---------
Confidence 479999999987 1247999999999999999999999999999999999653 55899875
Q ss_pred cCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHH
Q 008534 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (562)
Q Consensus 228 ~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA 307 (562)
...||||+|++.+++.+||.|++.+.... .....+++.++++.++|.+..++. +.+|||||||||+||
T Consensus 416 ~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~-------~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSGGe~QRv~iA 483 (607)
T 3bk7_A 416 DLTVAYKPQYIKAEYEGTVYELLSKIDSS-------KLNSNFYKTELLKPLGIIDLYDRN-----VEDLSGGELQRVAIA 483 (607)
T ss_dssp CCCEEEECSSCCCCCSSBHHHHHHHHHHH-------HHHCHHHHHHTHHHHTCTTTTTSB-----GGGCCHHHHHHHHHH
T ss_pred eeEEEEEecCccCCCCCcHHHHHHhhhcc-------CCCHHHHHHHHHHHcCCchHhcCC-----hhhCCHHHHHHHHHH
Confidence 24699999998877789999998764110 001134577889999998766654 468999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCcEEEEEecCCChHHHhcCCEEEEEcC--CeEEEecChHHHH
Q 008534 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGK--GSLLYFGKASEAM 384 (562)
Q Consensus 308 raLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~Tvii~tH~~~~~i~~~~D~i~vL~~--G~iv~~G~~~el~ 384 (562)
|||+.+|+||||||||+|||+.++..+++.|+++++ .|+|||++|||+. .+..+||+|++|++ |++++.|+++++.
T Consensus 484 raL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~-~~~~~adrv~vl~~~~g~~~~~g~p~~~~ 562 (607)
T 3bk7_A 484 ATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVL-MIDYVSDRLIVFEGEPGRHGRALPPMGMR 562 (607)
T ss_dssp HHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECCCEEHH
T ss_pred HHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEcCCcceEEecCCHHHHH
Confidence 999999999999999999999999999999999964 5899999999975 46788999999986 8889999998876
Q ss_pred H
Q 008534 385 A 385 (562)
Q Consensus 385 ~ 385 (562)
.
T Consensus 563 ~ 563 (607)
T 3bk7_A 563 E 563 (607)
T ss_dssp H
T ss_pred h
Confidence 5
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-38 Score=348.55 Aligned_cols=205 Identities=23% Similarity=0.313 Sum_probs=173.0
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhc
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~ 227 (562)
..++++|+++.| +...|+++||+|++||+++|+||||||||||+++|+|.+. +.+|+|.+
T Consensus 286 ~~l~~~~l~~~~---------~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~--p~~G~i~~--------- 345 (538)
T 1yqt_A 286 TLVTYPRLVKDY---------GSFRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEE--PTEGKIEW--------- 345 (538)
T ss_dssp EEEEECCEEEEE---------TTEEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSC--CSBCCCCC---------
T ss_pred eEEEEeeEEEEE---------CCEEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEE---------
Confidence 479999999987 1247999999999999999999999999999999999643 55899875
Q ss_pred cCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHH
Q 008534 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (562)
Q Consensus 228 ~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA 307 (562)
...|+||+|++.+++.+||.|++........ ...+++.++++.+++.+..++. +..|||||||||+||
T Consensus 346 ~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~-------~~~~~~~~~l~~~~l~~~~~~~-----~~~LSGGe~qrv~lA 413 (538)
T 1yqt_A 346 DLTVAYKPQYIKADYEGTVYELLSKIDASKL-------NSNFYKTELLKPLGIIDLYDRE-----VNELSGGELQRVAIA 413 (538)
T ss_dssp CCCEEEECSSCCCCCSSBHHHHHHHHHHHHH-------TCHHHHHHTTTTTTCGGGTTSB-----GGGCCHHHHHHHHHH
T ss_pred CceEEEEecCCcCCCCCcHHHHHHhhhccCC-------CHHHHHHHHHHHcCChhhhcCC-----hhhCCHHHHHHHHHH
Confidence 2469999999887778999998875411100 0124577888999997666554 568999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCcEEEEEecCCChHHHhcCCEEEEEcC--CeEEEecChHHHH
Q 008534 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGK--GSLLYFGKASEAM 384 (562)
Q Consensus 308 raLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~Tvii~tH~~~~~i~~~~D~i~vL~~--G~iv~~G~~~el~ 384 (562)
|||+.+|+||||||||+|||+.++..+++.|+++++ .|.|||++|||+. .+..+||+|++|++ |+++..|+++++.
T Consensus 414 raL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~drv~vl~~~~~~~~~~g~~~~~~ 492 (538)
T 1yqt_A 414 ATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVL-MIDYVSDRLMVFEGEPGKYGRALPPMGMR 492 (538)
T ss_dssp HHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECCCEEHH
T ss_pred HHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCcceEeecCCHHHHH
Confidence 999999999999999999999999999999999974 5999999999975 47789999999986 7899999998876
Q ss_pred H
Q 008534 385 A 385 (562)
Q Consensus 385 ~ 385 (562)
.
T Consensus 493 ~ 493 (538)
T 1yqt_A 493 E 493 (538)
T ss_dssp H
T ss_pred h
Confidence 5
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-37 Score=340.43 Aligned_cols=206 Identities=23% Similarity=0.268 Sum_probs=171.0
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhc
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~ 227 (562)
..++++|+++.| +...|+++||+|++||+++|+||||||||||+++|+|.+. +.+|+|.+++
T Consensus 268 ~~l~~~~l~~~~---------~~~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~~------- 329 (538)
T 3ozx_A 268 TKMKWTKIIKKL---------GDFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEIT--ADEGSVTPEK------- 329 (538)
T ss_dssp EEEEECCEEEEE---------TTEEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSC--CSBCCEESSC-------
T ss_pred ceEEEcceEEEE---------CCEEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECC-------
Confidence 469999999987 2256888999999999999999999999999999999653 5689998765
Q ss_pred cCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHH
Q 008534 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (562)
Q Consensus 228 ~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA 307 (562)
..++|++|+......+||+||+.+....... . ....+.++++.++|.+..+.. +.+|||||||||+||
T Consensus 330 -~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~-~-----~~~~~~~~l~~~~l~~~~~~~-----~~~LSGGq~QRv~iA 397 (538)
T 3ozx_A 330 -QILSYKPQRIFPNYDGTVQQYLENASKDALS-T-----SSWFFEEVTKRLNLHRLLESN-----VNDLSGGELQKLYIA 397 (538)
T ss_dssp -CCEEEECSSCCCCCSSBHHHHHHHHCSSTTC-T-----TSHHHHHTTTTTTGGGCTTSB-----GGGCCHHHHHHHHHH
T ss_pred -eeeEeechhcccccCCCHHHHHHHhhhhccc-h-----hHHHHHHHHHHcCCHHHhcCC-----hhhCCHHHHHHHHHH
Confidence 3589999998766678999999874211110 0 123467788889998766654 568999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCcEEEEEecCCChHHHhcCCEEEEEcC--CeEEEecChHHHH
Q 008534 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGK--GSLLYFGKASEAM 384 (562)
Q Consensus 308 raLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~Tvii~tH~~~~~i~~~~D~i~vL~~--G~iv~~G~~~el~ 384 (562)
|||+.+|+||||||||+|||+.++..+++.|+++++ .|.|||+||||+. .+..+||||++|++ |.+...+++.++.
T Consensus 398 raL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~-~~~~~aDri~vl~~~~~~~~~~~~~~~~~ 476 (538)
T 3ozx_A 398 ATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLS-IHDYIADRIIVFKGEPEKAGLATSPVTLK 476 (538)
T ss_dssp HHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECCCEEHH
T ss_pred HHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCcceeccCCChHHHH
Confidence 999999999999999999999999999999999975 5899999999975 47789999999986 5677777765543
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-36 Score=343.52 Aligned_cols=207 Identities=25% Similarity=0.387 Sum_probs=140.5
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHH---------------------HHHHcCCCCCC------CccEEEECCE
Q 008534 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLL---------------------NLLSGRLMEPT------VGGSITYNDH 221 (562)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl---------------------~~L~G~l~~~~------~~G~I~i~G~ 221 (562)
.+.+|+||||+|++||+++|+||||||||||+ +++.|... |. ..|.|.++|.
T Consensus 30 ~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~-~~~~~i~~~~~~i~~~~~ 108 (670)
T 3ux8_A 30 RAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEK-PDVDAIEGLSPAISIDQK 108 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC---------------CCCSEEESCCCEEEESSC
T ss_pred CccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhccccc-CCccceeccccceEecCc
Confidence 45799999999999999999999999999998 77776432 22 1467778877
Q ss_pred eCChhccCcEEEEccCCC-------------------CCCCCCHHHHHHHHHhhCCCCCccHHHHH------HHHHHHHH
Q 008534 222 PYSKSLKSKIGFVTQDDV-------------------LFPHLTVKETLTYAALLRLPNTLTKQQKE------KRAIDVIN 276 (562)
Q Consensus 222 ~~~~~~~~~igyV~Q~~~-------------------l~~~lTV~enl~~~~~~~~~~~~~~~~~~------~~v~~~l~ 276 (562)
+.....++.++||+|.+. .++.+||+||+.+......... ...... ....++++
T Consensus 109 ~~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~ 187 (670)
T 3ux8_A 109 TTSRNPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEK-EAQIARLILREIRDRLGFLQ 187 (670)
T ss_dssp C-----CCBHHHHTTCC-------------------------CC---------------------------CHHHHHHHH
T ss_pred hhhccchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchh-hhHHHHHHHHHHHHHHHHHH
Confidence 654433445666665433 2456899999987532211100 000000 11224578
Q ss_pred HcCCCcc-ccccccCcccCCCChhHHHHHHHHHHHhhCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEec
Q 008534 277 ELGLERC-QDTMIGGSFVRGVSGGERKRVCIGNEIIINPS--LLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIH 353 (562)
Q Consensus 277 ~lgL~~~-~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~--iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH 353 (562)
.+||.+. .++ .+.+|||||||||+|||||+.+|+ ||||||||+|||+.++..+++.|++++++|.|||+|||
T Consensus 188 ~~gL~~~~~~~-----~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtH 262 (670)
T 3ux8_A 188 NVGLDYLTLSR-----SAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEH 262 (670)
T ss_dssp HTTCTTCCTTC-----BGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECC
T ss_pred HcCCchhhhcC-----CcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeC
Confidence 8898754 344 356899999999999999999998 99999999999999999999999999888999999999
Q ss_pred CCChHHHhcCCEEEEE------cCCeEEEecChHHHH
Q 008534 354 QPSSRLFHKFDKLILL------GKGSLLYFGKASEAM 384 (562)
Q Consensus 354 ~~~~~i~~~~D~i~vL------~~G~iv~~G~~~el~ 384 (562)
++. ....||+|++| ++|++++.|+++++.
T Consensus 263 d~~--~~~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~ 297 (670)
T 3ux8_A 263 DED--TMLAADYLIDIGPGAGIHGGEVVAAGTPEEVM 297 (670)
T ss_dssp CHH--HHHHCSEEEEECSSSGGGCCSEEEEECHHHHH
T ss_pred CHH--HHhhCCEEEEecccccccCCEEEEecCHHHHh
Confidence 975 34569999999 899999999998875
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-35 Score=339.62 Aligned_cols=198 Identities=22% Similarity=0.307 Sum_probs=165.2
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhcc
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~ 228 (562)
.|...|+++.| +++.+|+|+||+|++|++++|+||||||||||+|+|+| |+| +|.+....
T Consensus 435 ~L~~~~ls~~y--------g~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag--------G~i--~g~~~~~~-- 494 (986)
T 2iw3_A 435 DLCNCEFSLAY--------GAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN--------GQV--DGFPTQEE-- 494 (986)
T ss_dssp EEEEEEEEEEE--------TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH--------TCS--TTCCCTTT--
T ss_pred eeEEeeEEEEE--------CCEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC--------CCc--CCCccccc--
Confidence 57777999988 35679999999999999999999999999999999995 222 34443222
Q ss_pred CcEEEEccCC-CCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCC-ccccccccCcccCCCChhHHHHHHH
Q 008534 229 SKIGFVTQDD-VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVSGGERKRVCI 306 (562)
Q Consensus 229 ~~igyV~Q~~-~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~~LSGGqrqRv~I 306 (562)
.+++|++|+. .+++.+||.||+.+ ... .. .+++.++++.+||. +..+.. +.+|||||||||+|
T Consensus 495 ~~~~~v~q~~~~~~~~ltv~e~l~~--~~~---~~-----~~~v~~~L~~lgL~~~~~~~~-----~~~LSGGqkQRvaL 559 (986)
T 2iw3_A 495 CRTVYVEHDIDGTHSDTSVLDFVFE--SGV---GT-----KEAIKDKLIEFGFTDEMIAMP-----ISALSGGWKMKLAL 559 (986)
T ss_dssp SCEEETTCCCCCCCTTSBHHHHHHT--TCS---SC-----HHHHHHHHHHTTCCHHHHHSB-----GGGCCHHHHHHHHH
T ss_pred eeEEEEcccccccccCCcHHHHHHH--hhc---CH-----HHHHHHHHHHcCCChhhhcCC-----cccCCHHHHHHHHH
Confidence 2478999985 67888999999976 111 11 45678899999995 455554 46899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEE-EecChHHHHH
Q 008534 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLL-YFGKASEAMA 385 (562)
Q Consensus 307 AraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv-~~G~~~el~~ 385 (562)
||||+.+|+||||||||+|||+.++..+.+.|++ .|.|||++||++. .+..+||+|++|++|+++ +.|+++++..
T Consensus 560 ArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~---~g~tvIivSHdl~-~l~~~adrii~L~~G~iv~~~G~~~e~~~ 635 (986)
T 2iw3_A 560 ARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT---CGITSITISHDSV-FLDNVCEYIINYEGLKLRKYKGNFTEFVK 635 (986)
T ss_dssp HHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH---SCSEEEEECSCHH-HHHHHCSEEEEEETTEEEEEESCHHHHHH
T ss_pred HHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh---CCCEEEEEECCHH-HHHHhCCEEEEEECCeeecCCCCHHHHHh
Confidence 9999999999999999999999999999999987 5899999999965 477899999999999997 6899988764
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-35 Score=331.86 Aligned_cols=202 Identities=23% Similarity=0.257 Sum_probs=164.5
Q ss_pred EeEEEEEeecccCCccccceeeceEEEEeCC-----eEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhc
Q 008534 153 TDVTYKVILKGMTSSEEKDILNGITGSVNPG-----EVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227 (562)
Q Consensus 153 ~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~G-----e~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~ 227 (562)
++++|.|. ....+++|+||++.+| |+++|+||||||||||+++|+|.+. +.+|+. + .
T Consensus 350 ~~~~~~y~-------~~~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~--p~~G~~------~---~ 411 (608)
T 3j16_B 350 ASRAFSYP-------SLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALK--PDEGQD------I---P 411 (608)
T ss_dssp SSSCCEEC-------CEEEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSC--CSBCCC------C---C
T ss_pred cceeEEec-------CcccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCC--CCCCcC------c---c
Confidence 45566662 1235899999999999 7899999999999999999999653 457752 2 1
Q ss_pred cCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHH
Q 008534 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (562)
Q Consensus 228 ~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA 307 (562)
+..++|++|+.......||+|++...... ... ....+.++++.++|.+..+.. +.+|||||||||+||
T Consensus 412 ~~~i~~~~q~~~~~~~~tv~e~~~~~~~~----~~~---~~~~~~~~l~~l~l~~~~~~~-----~~~LSGGqkQRv~iA 479 (608)
T 3j16_B 412 KLNVSMKPQKIAPKFPGTVRQLFFKKIRG----QFL---NPQFQTDVVKPLRIDDIIDQE-----VQHLSGGELQRVAIV 479 (608)
T ss_dssp SCCEEEECSSCCCCCCSBHHHHHHHHCSS----TTT---SHHHHHHTHHHHTSTTTSSSB-----SSSCCHHHHHHHHHH
T ss_pred CCcEEEecccccccCCccHHHHHHHHhhc----ccc---cHHHHHHHHHHcCChhhhcCC-----hhhCCHHHHHHHHHH
Confidence 34699999997665567999988643211 111 123466789999998776654 578999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-HCCcEEEEEecCCChHHHhcCCEEEEEcC--CeEEEecChHHHH
Q 008534 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA-EAGKTVVTTIHQPSSRLFHKFDKLILLGK--GSLLYFGKASEAM 384 (562)
Q Consensus 308 raLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~-~~g~Tvii~tH~~~~~i~~~~D~i~vL~~--G~iv~~G~~~el~ 384 (562)
|||+.+|+||||||||+|||+.++..+++.|+++. +.|+|||++|||+. .+..+||||++|++ |+++..|++++++
T Consensus 480 raL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~-~~~~~aDrvivl~~~~g~~~~~g~p~~~~ 558 (608)
T 3j16_B 480 LALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFI-MATYLADKVIVFEGIPSKNAHARAPESLL 558 (608)
T ss_dssp HHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEECEEETTTEEECCCCEEHH
T ss_pred HHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCCCeEEecCChHHHh
Confidence 99999999999999999999999999999999986 45999999999975 47789999999997 8999999999887
Q ss_pred H
Q 008534 385 A 385 (562)
Q Consensus 385 ~ 385 (562)
.
T Consensus 559 ~ 559 (608)
T 3j16_B 559 T 559 (608)
T ss_dssp H
T ss_pred h
Confidence 5
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-35 Score=329.01 Aligned_cols=194 Identities=25% Similarity=0.354 Sum_probs=155.4
Q ss_pred EEE-EeEEEEEeecccCCcccc-ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEE---------EE
Q 008534 150 LKF-TDVTYKVILKGMTSSEEK-DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSI---------TY 218 (562)
Q Consensus 150 l~~-~nvs~~y~~~~~~~~~~~-~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I---------~i 218 (562)
.++ +||+++| +++ .+|+||| +|++||+++|+||||||||||+|+|+|.+. +.+|++ .+
T Consensus 21 ~~~~~~ls~~y--------g~~~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~--p~~G~~~~~~~~~~~~~ 89 (538)
T 1yqt_A 21 EQLEEDCVHRY--------GVNAFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLI--PNLCGDNDSWDGVIRAF 89 (538)
T ss_dssp ---CCCEEEEC--------STTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSC--CCTTTTCCSHHHHHHHT
T ss_pred hhHhcCcEEEE--------CCccccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCccCcchhhhHHhh
Confidence 455 5899987 123 5899999 999999999999999999999999999653 457875 45
Q ss_pred CCEeCCh------hccCcEEEEccCCCCCCC---CCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCcccccccc
Q 008534 219 NDHPYSK------SLKSKIGFVTQDDVLFPH---LTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIG 289 (562)
Q Consensus 219 ~G~~~~~------~~~~~igyV~Q~~~l~~~---lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg 289 (562)
+|.++.. ..+..+++++|+..+++. .|+.|++.... ..+++.++++.+||.+..+..
T Consensus 90 ~g~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~~------------~~~~~~~~l~~lgl~~~~~~~-- 155 (538)
T 1yqt_A 90 RGNELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKAD------------ETGKLEEVVKALELENVLERE-- 155 (538)
T ss_dssp TTSTHHHHHHHHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHHC------------SSSCHHHHHHHTTCTTTTTSB--
T ss_pred CCccHHHHHHHHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhhh------------HHHHHHHHHHHcCCChhhhCC--
Confidence 6665421 112458899997544332 38999886421 013467889999998766654
Q ss_pred CcccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEE
Q 008534 290 GSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL 369 (562)
Q Consensus 290 ~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL 369 (562)
+.+|||||||||+|||||+.+|+||||||||++||+.++..+++.|+++.+.|.|||+|||++. .+..+||+|++|
T Consensus 156 ---~~~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~-~~~~~~dri~vl 231 (538)
T 1yqt_A 156 ---IQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLA-VLDYLSDIIHVV 231 (538)
T ss_dssp ---GGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEE
T ss_pred ---hhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence 5689999999999999999999999999999999999999999999999878999999999975 577889999999
Q ss_pred cCC
Q 008534 370 GKG 372 (562)
Q Consensus 370 ~~G 372 (562)
++|
T Consensus 232 ~~~ 234 (538)
T 1yqt_A 232 YGE 234 (538)
T ss_dssp EEE
T ss_pred cCc
Confidence 865
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-35 Score=332.56 Aligned_cols=191 Identities=26% Similarity=0.367 Sum_probs=155.3
Q ss_pred EeEEEEEeecccCCcccc-ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEE---------EECCEe
Q 008534 153 TDVTYKVILKGMTSSEEK-DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSI---------TYNDHP 222 (562)
Q Consensus 153 ~nvs~~y~~~~~~~~~~~-~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I---------~i~G~~ 222 (562)
+||+++| +.+ .+|+||| +|++||+++|+||||||||||+++|+|.+. +.+|++ .++|.+
T Consensus 95 ~~ls~~y--------g~~~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~--p~~G~~~~~~~~~~~~~~G~~ 163 (607)
T 3bk7_A 95 EDCVHRY--------GVNAFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLI--PNLCEDNDSWDNVIRAFRGNE 163 (607)
T ss_dssp GSEEEEC--------STTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSC--CCTTTTCCCHHHHHHHTTTST
T ss_pred CCeEEEE--------CCCCeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCC--CCCCccccccchhhheeCCEe
Confidence 7888887 123 5899999 999999999999999999999999999653 457885 456765
Q ss_pred CCh------hccCcEEEEccCCCCCC---CCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCccc
Q 008534 223 YSK------SLKSKIGFVTQDDVLFP---HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFV 293 (562)
Q Consensus 223 ~~~------~~~~~igyV~Q~~~l~~---~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~ 293 (562)
+.. ..+..+++++|...+++ ..||.||+.... . .+++.++++.+||.+..++. +
T Consensus 164 ~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~------~------~~~~~~~L~~lgL~~~~~~~-----~ 226 (607)
T 3bk7_A 164 LQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVD------E------VGKFEEVVKELELENVLDRE-----L 226 (607)
T ss_dssp HHHHHHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHHTC------C------SSCHHHHHHHTTCTTGGGSB-----G
T ss_pred hhhhhhhhhhhhcceEEeechhhhchhhccccHHHHhhhhH------H------HHHHHHHHHHcCCCchhCCC-----h
Confidence 422 11345889998743322 139999986410 0 12467889999998777664 4
Q ss_pred CCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCC
Q 008534 294 RGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKG 372 (562)
Q Consensus 294 ~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G 372 (562)
.+|||||||||+|||||+.+|+||||||||++||+.++..+++.|+++.+.|.|||++||++. .+..+||+|++|+++
T Consensus 227 ~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~-~~~~~adri~vl~~~ 304 (607)
T 3bk7_A 227 HQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLA-VLDYLSDVIHVVYGE 304 (607)
T ss_dssp GGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEESC
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChH-HHHhhCCEEEEECCC
Confidence 689999999999999999999999999999999999999999999999877999999999975 467789999999865
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-35 Score=340.54 Aligned_cols=208 Identities=21% Similarity=0.371 Sum_probs=161.4
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhc
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~ 227 (562)
..|+++||+|+|. +..+++|+||||+|++|++++|+||||||||||+|+|+|.+. +.+|+|.++|.
T Consensus 670 ~mL~v~nLs~~Y~------g~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~--P~sG~I~~~~~------ 735 (986)
T 2iw3_A 670 AIVKVTNMEFQYP------GTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELL--PTSGEVYTHEN------ 735 (986)
T ss_dssp EEEEEEEEEECCT------TCSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSC--CSEEEEEECTT------
T ss_pred ceEEEEeeEEEeC------CCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEEcCc------
Confidence 4799999999871 123679999999999999999999999999999999999653 56899999863
Q ss_pred cCcEEEEccCCCC----CCCCCHHHHHHHHHhhC------------CC--------------------------------
Q 008534 228 KSKIGFVTQDDVL----FPHLTVKETLTYAALLR------------LP-------------------------------- 259 (562)
Q Consensus 228 ~~~igyV~Q~~~l----~~~lTV~enl~~~~~~~------------~~-------------------------------- 259 (562)
.+|+||+|++.. ....|+.+++.+..... ..
T Consensus 736 -~~I~yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~ 814 (986)
T 2iw3_A 736 -CRIAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNT 814 (986)
T ss_dssp -CCEEEECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTE
T ss_pred -cceEeeccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhccc
Confidence 258999998631 12468888887632100 00
Q ss_pred --------------------CC--------ccH--------------------------HHHHHHHHHHHHHcCCCcc--
Q 008534 260 --------------------NT--------LTK--------------------------QQKEKRAIDVINELGLERC-- 283 (562)
Q Consensus 260 --------------------~~--------~~~--------------------------~~~~~~v~~~l~~lgL~~~-- 283 (562)
.. +.. ....+++.++++.+||.+.
T Consensus 815 ~~~e~~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~~ 894 (986)
T 2iw3_A 815 YEYECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIV 894 (986)
T ss_dssp EEEEEEEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHHH
T ss_pred chhhhhhhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCchhh
Confidence 00 000 0013457889999999742
Q ss_pred ccccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcC
Q 008534 284 QDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKF 363 (562)
Q Consensus 284 ~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~ 363 (562)
.+. .+.+|||||||||+|||||+.+|+||||||||+|||+.+...+.+.|+++ +.|||++||++. .+..+|
T Consensus 895 ~~~-----~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~---g~tVIiISHD~e-~v~~l~ 965 (986)
T 2iw3_A 895 SHS-----RIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF---EGGVIIITHSAE-FTKNLT 965 (986)
T ss_dssp HHS-----CGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC---SSEEEEECSCHH-HHTTTC
T ss_pred cCC-----CccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh---CCEEEEEECCHH-HHHHhC
Confidence 343 35689999999999999999999999999999999999999999888764 679999999965 466789
Q ss_pred CEEEEEcCCeEEEecC
Q 008534 364 DKLILLGKGSLLYFGK 379 (562)
Q Consensus 364 D~i~vL~~G~iv~~G~ 379 (562)
|+|++|++|+++..|+
T Consensus 966 DrVivL~~G~Iv~~G~ 981 (986)
T 2iw3_A 966 EEVWAVKDGRMTPSGH 981 (986)
T ss_dssp CEEECCBTTBCCC---
T ss_pred CEEEEEECCEEEEeCC
Confidence 9999999999988774
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-34 Score=324.08 Aligned_cols=199 Identities=27% Similarity=0.447 Sum_probs=149.7
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHc-----CC---------------CCCCCccEEEECCEeCChhc-
Q 008534 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSG-----RL---------------MEPTVGGSITYNDHPYSKSL- 227 (562)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G-----~l---------------~~~~~~G~I~i~G~~~~~~~- 227 (562)
...+|+||||+|++||++||+||||||||||+++|.+ .+ .. ...|.|.++|.++....
T Consensus 334 ~~~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~-~~~~~i~~~~~~~~~~~~ 412 (670)
T 3ux8_A 334 REHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLE-HLDKVIDIDQSPIGRTPR 412 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGG-GCSEEEECCSSCSCSSTT
T ss_pred cccccccceeEecCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHhhhccccccccccccccc-ccCceeEeccccCCCCCC
Confidence 3468999999999999999999999999999987641 00 00 12467888887763100
Q ss_pred --------------------------------------------cCcEEEEccCCCCCC---------------------
Q 008534 228 --------------------------------------------KSKIGFVTQDDVLFP--------------------- 242 (562)
Q Consensus 228 --------------------------------------------~~~igyV~Q~~~l~~--------------------- 242 (562)
....|+++|+..+++
T Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (670)
T 3ux8_A 413 SNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEV 492 (670)
T ss_dssp CCHHHHHTHHHHHHHHHHTSHHHHHHTCCGGGGCTTSTTTBCTTTTTCCC------------CCCTTTTTCCBCHHHHTC
T ss_pred cchhhhhhhhHHHHHHhcccchhhhcccccccccccCCCCccccccccceEeeecccccccccccccccCcccChhhhhe
Confidence 011244444433332
Q ss_pred -----------CCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCcc-ccccccCcccCCCChhHHHHHHHHHHH
Q 008534 243 -----------HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC-QDTMIGGSFVRGVSGGERKRVCIGNEI 310 (562)
Q Consensus 243 -----------~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~t~vg~~~~~~LSGGqrqRv~IAraL 310 (562)
.+||+||+.|... .. ...++.+.+..++|... .+ .++.+|||||||||+|||||
T Consensus 493 ~~~~~~~~~~~~ltv~e~l~~~~~------~~---~~~~~~~~l~~~~l~~~~~~-----~~~~~LSgG~~qrv~iAraL 558 (670)
T 3ux8_A 493 TYKGKNIAEVLDMTVEDALDFFAS------IP---KIKRKLETLYDVGLGYMKLG-----QPATTLSGGEAQRVKLAAEL 558 (670)
T ss_dssp CBTTBCHHHHHTSBHHHHHHHTTT------CH---HHHHHHHHHHHTTCTTSBTT-----CCGGGCCHHHHHHHHHHHHH
T ss_pred eecCCCHHHHhhCCHHHHHHHHHH------hh---hHHHHHHHHHHcCCchhhcc-----CCchhCCHHHHHHHHHHHHH
Confidence 4799999987531 11 12345677888888642 23 34578999999999999999
Q ss_pred hhCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEE------cCCeEEEecChH
Q 008534 311 IINP---SLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL------GKGSLLYFGKAS 381 (562)
Q Consensus 311 l~~P---~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL------~~G~iv~~G~~~ 381 (562)
+.+| +||||||||+|||+.++..+++.|++++++|+|||+|||++.. ...||+|++| ++|+|++.|+++
T Consensus 559 ~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~~--~~~~d~i~~l~~~~g~~~G~i~~~g~~~ 636 (670)
T 3ux8_A 559 HRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDV--IKTADYIIDLGPEGGDRGGQIVAVGTPE 636 (670)
T ss_dssp HSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHH--HTTCSEEEEEESSSGGGCCEEEEEECHH
T ss_pred hhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH--HHhCCEEEEecCCcCCCCCEEEEecCHH
Confidence 9887 5999999999999999999999999998889999999999753 4679999999 899999999999
Q ss_pred HHH
Q 008534 382 EAM 384 (562)
Q Consensus 382 el~ 384 (562)
++.
T Consensus 637 ~~~ 639 (670)
T 3ux8_A 637 EVA 639 (670)
T ss_dssp HHH
T ss_pred HHH
Confidence 974
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.97 E-value=4e-33 Score=307.95 Aligned_cols=180 Identities=20% Similarity=0.262 Sum_probs=139.9
Q ss_pred eeceEEE-EeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEE-----------EECCEeCChh----c--cCcEEEE
Q 008534 173 LNGITGS-VNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSI-----------TYNDHPYSKS----L--KSKIGFV 234 (562)
Q Consensus 173 L~~vs~~-i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I-----------~i~G~~~~~~----~--~~~igyV 234 (562)
++-..+. +++||++||+||||||||||+|+|+|.+. +.+|+| .++|.++... . ...+..+
T Consensus 14 f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~--p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~ 91 (538)
T 3ozx_A 14 FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEII--PNFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHK 91 (538)
T ss_dssp CEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSC--CCTTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEE
T ss_pred eeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhc
Confidence 3444444 45999999999999999999999999653 457988 5777765321 1 1224444
Q ss_pred ccC----CCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHH
Q 008534 235 TQD----DVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEI 310 (562)
Q Consensus 235 ~Q~----~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraL 310 (562)
.|. +.++. .+|++++.... ..+++.++++.+++.+..++. +.+|||||||||+|||||
T Consensus 92 ~~~~~~~~~~~~-~~v~~~l~~~~------------~~~~~~~~l~~l~l~~~~~~~-----~~~LSgGe~Qrv~iA~aL 153 (538)
T 3ozx_A 92 IQYVEYASKFLK-GTVNEILTKID------------ERGKKDEVKELLNMTNLWNKD-----ANILSGGGLQRLLVAASL 153 (538)
T ss_dssp CSCTTGGGTTCC-SBHHHHHHHHC------------CSSCHHHHHHHTTCGGGTTSB-----GGGCCHHHHHHHHHHHHH
T ss_pred cchhhhhhhhcc-CcHHHHhhcch------------hHHHHHHHHHHcCCchhhcCC-----hhhCCHHHHHHHHHHHHH
Confidence 443 33443 48888765321 112466788999998777664 468999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeE
Q 008534 311 IINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374 (562)
Q Consensus 311 l~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~i 374 (562)
+.+|+||||||||++||+.++..+.+.|+++.+ |+|||+|+|++. .+..+||+|++|++|..
T Consensus 154 ~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~-g~tii~vsHdl~-~~~~~~d~i~vl~~~~~ 215 (538)
T 3ozx_A 154 LREADVYIFDQPSSYLDVRERMNMAKAIRELLK-NKYVIVVDHDLI-VLDYLTDLIHIIYGESS 215 (538)
T ss_dssp HSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCT-TSEEEEECSCHH-HHHHHCSEEEEEEEETT
T ss_pred HcCCCEEEEECCcccCCHHHHHHHHHHHHHHhC-CCEEEEEEeChH-HHHhhCCEEEEecCCcc
Confidence 999999999999999999999999999999976 999999999975 57889999999987643
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=9.9e-33 Score=308.42 Aligned_cols=188 Identities=26% Similarity=0.314 Sum_probs=142.4
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEE-----------EECCEeCCh----hccCcE--E
Q 008534 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSI-----------TYNDHPYSK----SLKSKI--G 232 (562)
Q Consensus 170 ~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I-----------~i~G~~~~~----~~~~~i--g 232 (562)
...|++++ .+++||+++|+||||||||||||+|+|.+. +.+|+| .+.|.++.. .....+ .
T Consensus 91 ~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~--P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 167 (608)
T 3j16_B 91 SFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQK--PNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAI 167 (608)
T ss_dssp SCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSC--CCTTTTCCSSCHHHHHHHTTTSTHHHHHHHHHHTSCCCE
T ss_pred ceeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCC--CCCceEecccchhhhhheecChhhhhhhhHHHHHhhhhh
Confidence 35788877 689999999999999999999999999653 457987 233333211 111222 2
Q ss_pred EEccCCCC------CCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHH
Q 008534 233 FVTQDDVL------FPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (562)
Q Consensus 233 yV~Q~~~l------~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~I 306 (562)
+.+|.... -+..++.+++.... . ...+++.++++.+||.+..++. +.+|||||||||+|
T Consensus 168 ~~~~~~~~~~~~~~~~~~~v~~~l~~~~----~------~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgGe~Qrv~i 232 (608)
T 3j16_B 168 IKPQYVDNIPRAIKGPVQKVGELLKLRM----E------KSPEDVKRYIKILQLENVLKRD-----IEKLSGGELQRFAI 232 (608)
T ss_dssp EECCCTTTHHHHCSSSSSHHHHHHHHHC----C------SCHHHHHHHHHHHTCTGGGGSC-----TTTCCHHHHHHHHH
T ss_pred hchhhhhhhhhhhcchhhHHHHHHhhhh----h------hHHHHHHHHHHHcCCcchhCCC-----hHHCCHHHHHHHHH
Confidence 33443211 11235666554321 0 1124678899999998877764 46899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEE
Q 008534 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (562)
Q Consensus 307 AraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~ 376 (562)
||||+.+|+||||||||++||+.++..+.+.|+++.++|+|||+++|++. .+..+||+|++|++|..++
T Consensus 233 AraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~-~~~~~~drv~vl~~~~~~~ 301 (608)
T 3j16_B 233 GMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLS-VLDYLSDFVCIIYGVPSVY 301 (608)
T ss_dssp HHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHH-HHHHHCSEEEEEESCTTTE
T ss_pred HHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCcccc
Confidence 99999999999999999999999999999999999888999999999975 4778999999999876444
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.6e-31 Score=305.41 Aligned_cols=200 Identities=27% Similarity=0.479 Sum_probs=153.7
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHH---------HHHHcCCCCC----CCc------cEEEECCEeCChh----
Q 008534 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLL---------NLLSGRLMEP----TVG------GSITYNDHPYSKS---- 226 (562)
Q Consensus 170 ~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl---------~~L~G~l~~~----~~~------G~I~i~G~~~~~~---- 226 (562)
...|+||||+|++|++++|+||||||||||+ +++.+....+ ... +.|.+++.++...
T Consensus 597 ~~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~ 676 (916)
T 3pih_A 597 HNNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSN 676 (916)
T ss_dssp STTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCC
T ss_pred cccccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceEeecccccccccccc
Confidence 3579999999999999999999999999997 4444421100 011 3456665554210
Q ss_pred -----------------------------------------ccCcEEEEccCCCCCCC----------------------
Q 008534 227 -----------------------------------------LKSKIGFVTQDDVLFPH---------------------- 243 (562)
Q Consensus 227 -----------------------------------------~~~~igyV~Q~~~l~~~---------------------- 243 (562)
..+..||+.++..++|.
T Consensus 677 ~at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~ 756 (916)
T 3pih_A 677 PATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITY 756 (916)
T ss_dssp HHHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCB
T ss_pred ccchhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecccccccccchhhhhhhh
Confidence 01235788887766653
Q ss_pred ----------CCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhC
Q 008534 244 ----------LTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIIN 313 (562)
Q Consensus 244 ----------lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~ 313 (562)
+||.|++.|... . ....++.++|+.+||.... + +..+.+|||||||||+|||||+.+
T Consensus 757 ~g~~i~~vl~~tv~eal~f~~~------~---~~~~~~~~~L~~vGL~~~~---l-gq~~~~LSGGErQRV~LAraL~~~ 823 (916)
T 3pih_A 757 KGKNISDILDMTVDEALEFFKN------I---PSIKRTLQVLHDVGLGYVK---L-GQPATTLSGGEAQRIKLASELRKR 823 (916)
T ss_dssp TTBCHHHHHSSBHHHHHHHTTT------C---HHHHHHHHHHHHTTGGGSB---T-TCCSTTCCHHHHHHHHHHHHHTSC
T ss_pred ccCCHHHHhhCCHHHHHHHHhc------c---hhHHHHHHHHHHcCCchhh---c-cCCccCCCHHHHHHHHHHHHHhhC
Confidence 678888887431 1 1234567889999996421 1 234678999999999999999987
Q ss_pred C---CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEE------cCCeEEEecChHHHH
Q 008534 314 P---SLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL------GKGSLLYFGKASEAM 384 (562)
Q Consensus 314 P---~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL------~~G~iv~~G~~~el~ 384 (562)
| +||||||||+|||+.+...+++.|++++++|.|||+|+|+++ +...||+|++| ++|+|++.|+++++.
T Consensus 824 p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~--~i~~ADrIivLgp~gg~~~G~Iv~~Gtpeel~ 901 (916)
T 3pih_A 824 DTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLD--VIKNADHIIDLGPEGGKEGGYIVATGTPEEIA 901 (916)
T ss_dssp CCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH--HHTTCSEEEEEESSSGGGCCEEEEEESHHHHH
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--HHHhCCEEEEecCCCCCCCCEEEEEcCHHHHH
Confidence 5 799999999999999999999999999888999999999975 34679999999 899999999999986
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.5e-31 Score=306.13 Aligned_cols=208 Identities=27% Similarity=0.439 Sum_probs=159.2
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHH-c----CCC----CCC----Ccc
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLS-G----RLM----EPT----VGG 214 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~-G----~l~----~~~----~~G 214 (562)
..|+++|++. .+|+||||+|++|++++|+|+||||||||+++|+ | .+. .+. ..|
T Consensus 628 ~~L~v~~l~~-------------~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G 694 (972)
T 2r6f_A 628 RWLEVVGARE-------------HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRG 694 (972)
T ss_dssp CEEEEEEECS-------------SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEEC
T ss_pred eEEEEecCcc-------------cccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeecc
Confidence 3588887741 3699999999999999999999999999999853 2 111 110 113
Q ss_pred ------EEEECCEeCChhc-----------------------cCcEEEEccCCCCC----------------------C-
Q 008534 215 ------SITYNDHPYSKSL-----------------------KSKIGFVTQDDVLF----------------------P- 242 (562)
Q Consensus 215 ------~I~i~G~~~~~~~-----------------------~~~igyV~Q~~~l~----------------------~- 242 (562)
.|.++|.++.... .+.+||++|.+.+. +
T Consensus 695 ~~~~~~~I~idq~pig~~~rs~paty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~ 774 (972)
T 2r6f_A 695 LEHLDKVIDIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPD 774 (972)
T ss_dssp GGGCSEEEEECSSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCC
T ss_pred ccccceEEEEcCcccccCccccchhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhcccc
Confidence 5888988863110 12357777753221 1
Q ss_pred -------------------------------CCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCc-cccccccC
Q 008534 243 -------------------------------HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-CQDTMIGG 290 (562)
Q Consensus 243 -------------------------------~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~t~vg~ 290 (562)
.+||.|++.|... ... ..++.++++.+||.. ..+.
T Consensus 775 v~~~ce~c~G~r~~~e~l~v~~~g~sI~dvl~ltv~e~l~~~~~------~~~---~~~~~~~L~~~gL~~~~l~~---- 841 (972)
T 2r6f_A 775 VYVPCEVCHGKRYNRETLEVTYKGKNIAEVLDMTVEDALDFFAS------IPK---IKRKLETLYDVGLGYMKLGQ---- 841 (972)
T ss_dssp EEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTSBHHHHHHHTCS------CHH---HHHHHHHHHHTTCSSSBTTC----
T ss_pred ccccccccccccccchhhhhhccCCCHHHhhhcCHHHHHHHHhc------chh---HHHHHHHHHHcCCCcccccC----
Confidence 3578888776421 111 234567899999975 3443
Q ss_pred cccCCCChhHHHHHHHHHHHhhCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEE
Q 008534 291 SFVRGVSGGERKRVCIGNEIIINP---SLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLI 367 (562)
Q Consensus 291 ~~~~~LSGGqrqRv~IAraLl~~P---~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~ 367 (562)
.+.+|||||||||+||++|+.+| +||||||||+|||+.+...+++.|+++++.|.|||+|+|++.. ...||+|+
T Consensus 842 -~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~--i~~aDrIi 918 (972)
T 2r6f_A 842 -PATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDV--IKTADYII 918 (972)
T ss_dssp -CGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHH--HTTCSEEE
T ss_pred -chhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHH--HHhCCEEE
Confidence 45689999999999999999865 9999999999999999999999999998889999999999753 46899999
Q ss_pred EE------cCCeEEEecChHHHH
Q 008534 368 LL------GKGSLLYFGKASEAM 384 (562)
Q Consensus 368 vL------~~G~iv~~G~~~el~ 384 (562)
+| ++|++++.|+++++.
T Consensus 919 vL~p~gG~~~G~Iv~~g~~~el~ 941 (972)
T 2r6f_A 919 DLGPEGGDRGGQIVAVGTPEEVA 941 (972)
T ss_dssp EECSSSTTSCCSEEEEESHHHHH
T ss_pred EEcCCCCCCCCEEEEecCHHHHH
Confidence 99 789999999999875
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=4.4e-31 Score=303.25 Aligned_cols=208 Identities=27% Similarity=0.425 Sum_probs=156.5
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHH-HHcCCC------CC----------
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNL-LSGRLM------EP---------- 210 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~-L~G~l~------~~---------- 210 (562)
..|+++|+++ .+|+||||+|++|++++|+|+||||||||+++ |+|.+. .+
T Consensus 501 ~~L~v~~l~~-------------~~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~ 567 (842)
T 2vf7_A 501 GWLELNGVTR-------------NNLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPA 567 (842)
T ss_dssp CEEEEEEEEE-------------TTEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC-------------
T ss_pred ceEEEEeeee-------------cccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCcccccccccc
Confidence 3699999864 26999999999999999999999999999996 664321 01
Q ss_pred -------CCcc-------EEEECCEeCChhcc-----------------------CcEEEEcc-----------------
Q 008534 211 -------TVGG-------SITYNDHPYSKSLK-----------------------SKIGFVTQ----------------- 236 (562)
Q Consensus 211 -------~~~G-------~I~i~G~~~~~~~~-----------------------~~igyV~Q----------------- 236 (562)
+..| .|.++|.++....+ +.+||.++
T Consensus 568 ~~~~~~~~~~G~~~~~~~~i~vdq~~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~ 647 (842)
T 2vf7_A 568 DHTAGSARLGGDLAQITRLVRVDQKPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGE 647 (842)
T ss_dssp ----CCCEEEESGGGCCEEEEECSSCSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTC
T ss_pred ccccccccccCcccccceEEEECCeeCCCCccccchhhhhHHHHHHHHHhcChHHHhcCCccccccccccccccccccCC
Confidence 1356 78999987642111 11122221
Q ss_pred -----CCCCCC------------------------C--------CCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcC
Q 008534 237 -----DDVLFP------------------------H--------LTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG 279 (562)
Q Consensus 237 -----~~~l~~------------------------~--------lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lg 279 (562)
+..+++ . +|+.|++.|.. .. . ...++.++++.+|
T Consensus 648 G~~~~~~~f~~~v~~~c~~c~G~r~~~e~l~v~~~~~si~e~l~ltv~e~l~~~~------~~-~--~~~~~~~~L~~~g 718 (842)
T 2vf7_A 648 GWVMVELLFLPSVYAPCPVCHGTRYNAETLEVEYRGKNIADVLALTVDEAHDFFA------DE-S--AIFRALDTLREVG 718 (842)
T ss_dssp SEEEETTCSSSCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTCBHHHHHHHTT------TS-H--HHHHHHHHHHHTT
T ss_pred CccchhhhcCCccceecccccCcccchhhHhhhhcCCCHHHHHhccHHHHHHHhh------cc-h--HHHHHHHHHHHcC
Confidence 212222 2 34455444421 11 1 2246788999999
Q ss_pred CCcc-ccccccCcccCCCChhHHHHHHHHHHHhhC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCC
Q 008534 280 LERC-QDTMIGGSFVRGVSGGERKRVCIGNEIIIN---PSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQP 355 (562)
Q Consensus 280 L~~~-~~t~vg~~~~~~LSGGqrqRv~IAraLl~~---P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~ 355 (562)
|... .+. .+..|||||||||+||++|+.+ |+||||||||+|||+.+...+++.|+++++.|.|||+|+|++
T Consensus 719 L~~~~l~~-----~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl 793 (842)
T 2vf7_A 719 LGYLRLGQ-----PATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKM 793 (842)
T ss_dssp CTTSBTTC-----CGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCH
T ss_pred CCcccccC-----CcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCH
Confidence 9753 233 4578999999999999999996 799999999999999999999999999988899999999997
Q ss_pred ChHHHhcCCEEEEE------cCCeEEEecChHHHH
Q 008534 356 SSRLFHKFDKLILL------GKGSLLYFGKASEAM 384 (562)
Q Consensus 356 ~~~i~~~~D~i~vL------~~G~iv~~G~~~el~ 384 (562)
. .+ ..||+|++| ++|+|++.|+++++.
T Consensus 794 ~-~i-~~aDrii~L~p~~g~~~G~Iv~~g~~~el~ 826 (842)
T 2vf7_A 794 Q-VV-AASDWVLDIGPGAGEDGGRLVAQGTPAEVA 826 (842)
T ss_dssp H-HH-TTCSEEEEECSSSGGGCCSEEEEECHHHHT
T ss_pred H-HH-HhCCEEEEECCCCCCCCCEEEEEcCHHHHH
Confidence 5 35 789999999 799999999999874
|
| >4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.97 E-value=9.9e-30 Score=271.07 Aligned_cols=203 Identities=16% Similarity=0.227 Sum_probs=147.5
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC------------------------------------CCCcc
Q 008534 171 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME------------------------------------PTVGG 214 (562)
Q Consensus 171 ~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~------------------------------------~~~~G 214 (562)
.+|++++|++.+| +++|+|||||||||||++|.+.+.. .+.+|
T Consensus 49 ~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~ 127 (415)
T 4aby_A 49 ATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRG 127 (415)
T ss_dssp TTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCE
T ss_pred cceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCce
Confidence 4799999999999 9999999999999999999764421 12368
Q ss_pred EEEECCEeCCh----hc-cCcEEEEccCCCCCCCCCHHHHHHHHHhhCCC-----------------------CCc----
Q 008534 215 SITYNDHPYSK----SL-KSKIGFVTQDDVLFPHLTVKETLTYAALLRLP-----------------------NTL---- 262 (562)
Q Consensus 215 ~I~i~G~~~~~----~~-~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~-----------------------~~~---- 262 (562)
.+.+||++++. .+ +..+++++|++.++. .+..+...|....... ...
T Consensus 128 ~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l-~~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~ 206 (415)
T 4aby_A 128 AARLSGEVVSVRELQEWAQGRLTIHWQHSAVSL-LSPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSKH 206 (415)
T ss_dssp EEEETTEEECHHHHHHHHTTTEEEETTTCTTTT-SSHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred EEEECCEECCHHHHHHHHhhceEEecCcccccc-cCHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 89999999863 22 334899999987765 3665555443211000 000
Q ss_pred ------------------------------cHHHHHHHHHHHHHHcCCCccc----------------cc---cccC---
Q 008534 263 ------------------------------TKQQKEKRAIDVINELGLERCQ----------------DT---MIGG--- 290 (562)
Q Consensus 263 ------------------------------~~~~~~~~v~~~l~~lgL~~~~----------------~t---~vg~--- 290 (562)
........+.+.++.+++++.. +. .+..
T Consensus 207 ~~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 286 (415)
T 4aby_A 207 PTSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANPG 286 (415)
T ss_dssp ---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSSS
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCCC
Confidence 0000122344556666654310 00 1110
Q ss_pred ---cccCC-CChhHHHHHHHHHHHhhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCC
Q 008534 291 ---SFVRG-VSGGERKRVCIGNEIIINP--SLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFD 364 (562)
Q Consensus 291 ---~~~~~-LSGGqrqRv~IAraLl~~P--~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D 364 (562)
..+.. |||||||||+||++|+.+| +||||||||+|||+.++..|.+.|++++ +|.|||+|||++. +...||
T Consensus 287 ~~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~~~~vi~itH~~~--~~~~~d 363 (415)
T 4aby_A 287 EELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-DTRQVLVVTHLAQ--IAARAH 363 (415)
T ss_dssp CCCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSCHH--HHTTCS
T ss_pred CcccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEeCcHH--HHhhcC
Confidence 11222 6999999999999999999 9999999999999999999999999998 5899999999973 567899
Q ss_pred EEEEE----cCCeEEEec
Q 008534 365 KLILL----GKGSLLYFG 378 (562)
Q Consensus 365 ~i~vL----~~G~iv~~G 378 (562)
++++| ++|+++...
T Consensus 364 ~i~~l~k~~~~G~~~~~~ 381 (415)
T 4aby_A 364 HHYKVEKQVEDGRTVSHV 381 (415)
T ss_dssp EEEEEEEEEETTEEEEEE
T ss_pred eEEEEEEeccCCceEEEE
Confidence 99999 999987654
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.2e-32 Score=295.35 Aligned_cols=197 Identities=13% Similarity=0.099 Sum_probs=155.1
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCcc-E-EEECCEeCChh
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGG-S-ITYNDHPYSKS 226 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G-~-I~i~G~~~~~~ 226 (562)
+++++||++.| .++||++++|++++|+||||||||||+|+|+|... +.+| + |.+||.
T Consensus 118 mi~~~nl~~~y--------------~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~--p~~G~~pI~vdg~----- 176 (460)
T 2npi_A 118 MKYIYNLHFML--------------EKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYAL--KFNAYQPLYINLD----- 176 (460)
T ss_dssp HHHHHHHHHHH--------------HHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTH--HHHCCCCEEEECC-----
T ss_pred hhhhhhhhehh--------------hcCceEeCCCCEEEEECCCCCCHHHHHHHHhCccc--ccCCceeEEEcCC-----
Confidence 57888888765 27999999999999999999999999999999543 5689 8 999983
Q ss_pred ccCcEEEEccCCC---CCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHH
Q 008534 227 LKSKIGFVTQDDV---LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (562)
Q Consensus 227 ~~~~igyV~Q~~~---l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqR 303 (562)
.++.++||||+.. +++.+||+||+ |+....... . ..+++.++++.+|+.+..+ +.+||||||||
T Consensus 177 ~~~~i~~vpq~~~l~~~~~~~tv~eni-~~~~~~~~~--~---~~~~~~~ll~~~gl~~~~~-------~~~LSgGq~qr 243 (460)
T 2npi_A 177 PQQPIFTVPGCISATPISDILDAQLPT-WGQSLTSGA--T---LLHNKQPMVKNFGLERINE-------NKDLYLECISQ 243 (460)
T ss_dssp TTSCSSSCSSCCEEEECCSCCCTTCTT-CSCBCBSSC--C---SSCCBCCEECCCCSSSGGG-------CHHHHHHHHHH
T ss_pred ccCCeeeeccchhhcccccccchhhhh-cccccccCc--c---hHHHHHHHHHHhCCCcccc-------hhhhhHHHHHH
Confidence 3677999999985 34457999999 654321110 0 1123445677788876544 35899999999
Q ss_pred HHHHHH--HhhCCCE----EEEeC-CCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCC--h---HHHhcCCE-----E
Q 008534 304 VCIGNE--IIINPSL----LFLDE-PTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPS--S---RLFHKFDK-----L 366 (562)
Q Consensus 304 v~IAra--Ll~~P~i----LlLDE-PTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~--~---~i~~~~D~-----i 366 (562)
|+|||| |+.+|++ ||||| ||++||+. ...+.+.+++ .++|+|+++|+.. . .+..+||+ |
T Consensus 244 lalAra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~---~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~v 319 (460)
T 2npi_A 244 LGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEK---LNVNIMLVLCSETDPLWEKVKKTFGPELGNNNI 319 (460)
T ss_dssp HHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHH---TTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGE
T ss_pred HHHHHHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHHHH---hCCCEEEEEccCchhhhHHHHHHhcccccCCEE
Confidence 999999 9999999 99999 99999999 5555555443 3789999999976 1 35578999 9
Q ss_pred EEEc-CCeEEEecChHHHH
Q 008534 367 ILLG-KGSLLYFGKASEAM 384 (562)
Q Consensus 367 ~vL~-~G~iv~~G~~~el~ 384 (562)
++|+ +|+++ .|+++++.
T Consensus 320 i~l~k~G~iv-~g~~~~~~ 337 (460)
T 2npi_A 320 FFIPKLDGVS-AVDDVYKR 337 (460)
T ss_dssp EEECCCTTCC-CCCHHHHH
T ss_pred EEEeCCCcEE-ECCHHHHh
Confidence 9999 99999 99987763
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=3.8e-26 Score=241.05 Aligned_cols=84 Identities=26% Similarity=0.425 Sum_probs=77.1
Q ss_pred cccCCCChhHHHHHHHHHHHh------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCC
Q 008534 291 SFVRGVSGGERKRVCIGNEII------INPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFD 364 (562)
Q Consensus 291 ~~~~~LSGGqrqRv~IAraLl------~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D 364 (562)
..+.+|||||||||+||+||+ .+|++|||||||+|||+.++..+++.|+++.+.|+|||+|||++. ....||
T Consensus 275 ~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~--~~~~~d 352 (365)
T 3qf7_A 275 RPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDRE--FSEAFD 352 (365)
T ss_dssp EEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHH--HHTTCS
T ss_pred CCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchH--HHHhCC
Confidence 456789999999999999999 699999999999999999999999999999878999999999975 367899
Q ss_pred EEEEEcCCeEEE
Q 008534 365 KLILLGKGSLLY 376 (562)
Q Consensus 365 ~i~vL~~G~iv~ 376 (562)
+|++|++|++++
T Consensus 353 ~~~~l~~G~i~~ 364 (365)
T 3qf7_A 353 RKLRITGGVVVN 364 (365)
T ss_dssp CEEEEETTEEC-
T ss_pred EEEEEECCEEEe
Confidence 999999999875
|
| >1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.93 E-value=7.9e-26 Score=234.32 Aligned_cols=205 Identities=18% Similarity=0.171 Sum_probs=129.4
Q ss_pred eceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC---------------------------------------------
Q 008534 174 NGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLM--------------------------------------------- 208 (562)
Q Consensus 174 ~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~--------------------------------------------- 208 (562)
+++++++.+| +++|+||||||||||+++|...+-
T Consensus 16 ~~~~l~~~~g-~~~i~G~NGsGKS~ll~ai~~llg~~~~~s~r~~~~~~li~~g~~~~~~~~~~~v~~~f~~~~~~~~i~ 94 (322)
T 1e69_A 16 RPSLIGFSDR-VTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASEKFDMIFAGSENLPPAGSAYVELVFEENGEEITVA 94 (322)
T ss_dssp SCEEEECCSS-EEEEECCTTTCSTHHHHHHHHTSCC----------CCTTBCCCBTTBCCCSEEEEEEEEESSSCEEEEE
T ss_pred CCeEEecCCC-cEEEECCCCCcHHHHHHHHHHHhCCCchhhcccccHHHhhccCccCCCCCceEEEEEEEEeCCeEEEEE
Confidence 4678999999 999999999999999999984320
Q ss_pred ---CCCCccEEEECCEeCCh----hccCcEEEEccCCCCCCCCCHHHHHHHHHhhC-----------CCCCccHHHHHHH
Q 008534 209 ---EPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLR-----------LPNTLTKQQKEKR 270 (562)
Q Consensus 209 ---~~~~~G~I~i~G~~~~~----~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~-----------~~~~~~~~~~~~~ 270 (562)
..+.+|.+.+||.++.. .....+++.+|+..+++..++.+++......+ .+.... ....+.
T Consensus 95 r~~~~~~~~~~~ing~~~~~~~~~~~~~~~g~~~~~~~lv~qg~i~~~~~~~p~~rr~~ld~~~~~~~~~~~y-~rv~e~ 173 (322)
T 1e69_A 95 RELKRTGENTYYLNGSPVRLKDIRDRFAGTGLGVDFYSIVGQGQIDRIVNASPEELRLESSKHPTSLVPRGSY-QRVNES 173 (322)
T ss_dssp EEEETTSCEEEEETTEEECHHHHHHHTTTSSTTTTCCSEEEHHHHHHHHTC---------------------C-HHHHHH
T ss_pred EEEEcCCceEEEECCcCccHHHHHHHHHHcCCChhheeeEehhhHHHHHhccHHHHHHHHHHhhhhHHHHHHH-HHHHHH
Confidence 01124688999988752 22345666666555443334555443221100 000000 000111
Q ss_pred HHHHHHHc----------------CCCccccccc-----cCcccCCCChhHHHHHHHHHHHh----hCCCEEEEeCCCCC
Q 008534 271 AIDVINEL----------------GLERCQDTMI-----GGSFVRGVSGGERKRVCIGNEII----INPSLLFLDEPTSG 325 (562)
Q Consensus 271 v~~~l~~l----------------gL~~~~~t~v-----g~~~~~~LSGGqrqRv~IAraLl----~~P~iLlLDEPTsg 325 (562)
..+++..+ -++...+..+ .+..+..||||||||++||++|+ .+|+||||||||++
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~ 253 (322)
T 1e69_A 174 FNRFISLLFFGGEGRLNIVSEAKSILDAGFEISIRKPGRRDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSP 253 (322)
T ss_dssp HHHHHHHHHTSCEEEC--------------CCEEECTTSCCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSS
T ss_pred HHHHHHHhcCCceEEEEeeccccccccCCeEEEEecCccccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCC
Confidence 11111100 0111111111 12235689999999999999997 57899999999999
Q ss_pred CCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEE--EEEcCCe-EEEecChHHH
Q 008534 326 LDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKL--ILLGKGS-LLYFGKASEA 383 (562)
Q Consensus 326 LD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i--~vL~~G~-iv~~G~~~el 383 (562)
||+..+..+.+.|+++. .|.|||++||++. +...||++ ++|.+|. .+.....++.
T Consensus 254 LD~~~~~~l~~~l~~~~-~~~~vi~~tH~~~--~~~~~d~~~~v~~~~g~s~~~~~~~~~~ 311 (322)
T 1e69_A 254 LDDYNAERFKRLLKENS-KHTQFIVITHNKI--VMEAADLLHGVTMVNGVSAIVPVEVEKI 311 (322)
T ss_dssp CCHHHHHHHHHHHHHHT-TTSEEEEECCCTT--GGGGCSEEEEEEESSSCEEEEECCC---
T ss_pred CCHHHHHHHHHHHHHhc-CCCeEEEEECCHH--HHhhCceEEEEEEeCCEEEEEEEEcchh
Confidence 99999999999999985 4889999999963 56889987 8888885 4555555553
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.4e-29 Score=245.76 Aligned_cols=140 Identities=19% Similarity=0.286 Sum_probs=100.1
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCC---hhccCcEEEEccCCCCCCCCC
Q 008534 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---KSLKSKIGFVTQDDVLFPHLT 245 (562)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~---~~~~~~igyV~Q~~~l~~~lT 245 (562)
.+.+|+|| ++||+++|+||||||||||+++|+|. . +.+|+|.. .++. ...++.||||+|++
T Consensus 12 ~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~--p~~G~I~~--~~~~~~~~~~~~~ig~v~q~~------- 75 (208)
T 3b85_A 12 QKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-A--LQSKQVSR--IILTRPAVEAGEKLGFLPGTL------- 75 (208)
T ss_dssp HHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-H--HHTTSCSE--EEEEECSCCTTCCCCSSCC---------
T ss_pred HHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-C--CcCCeeee--EEecCCchhhhcceEEecCCH-------
Confidence 45799996 89999999999999999999999995 3 45788842 2221 23467799999986
Q ss_pred HHHHH-HHHH----hhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEe
Q 008534 246 VKETL-TYAA----LLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLD 320 (562)
Q Consensus 246 V~enl-~~~~----~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLD 320 (562)
+||+ .+.. .... .. ..+++.++++. + + ||||||+|||||+.+|+|||||
T Consensus 76 -~enl~~~~~~~~~~~~~--~~----~~~~~~~~l~~-g----------------l--Gq~qrv~lAraL~~~p~lllLD 129 (208)
T 3b85_A 76 -NEKIDPYLRPLHDALRD--MV----EPEVIPKLMEA-G----------------I--VEVAPLAYMRGRTLNDAFVILD 129 (208)
T ss_dssp -----CTTTHHHHHHHTT--TS----CTTHHHHHHHT-T----------------S--EEEEEGGGGTTCCBCSEEEEEC
T ss_pred -HHHHHHHHHHHHHHHHH--hc----cHHHHHHHHHh-C----------------C--chHHHHHHHHHHhcCCCEEEEe
Confidence 4454 2211 0100 00 01234444443 2 2 9999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCC
Q 008534 321 EPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPS 356 (562)
Q Consensus 321 EPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~ 356 (562)
|||+| ++..+++.|+++ ++|+||| +||++.
T Consensus 130 EPts~----~~~~l~~~l~~l-~~g~tii-vtHd~~ 159 (208)
T 3b85_A 130 EAQNT----TPAQMKMFLTRL-GFGSKMV-VTGDIT 159 (208)
T ss_dssp SGGGC----CHHHHHHHHTTB-CTTCEEE-EEEC--
T ss_pred CCccc----cHHHHHHHHHHh-cCCCEEE-EECCHH
Confidence 99999 888999999988 5689999 999965
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=2.9e-30 Score=265.72 Aligned_cols=169 Identities=18% Similarity=0.256 Sum_probs=135.2
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhcc
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~ 228 (562)
.|+++||+|.| . +++|+||||+|++|++++|+||||||||||+++|+|.+ +|+|
T Consensus 101 ~i~~~~vs~~y--------~-~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~-----~G~I------------ 154 (305)
T 2v9p_A 101 FFNYQNIELIT--------F-INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL-----GGSV------------ 154 (305)
T ss_dssp HHHHTTCCHHH--------H-HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH-----TCEE------------
T ss_pred eEEEEEEEEEc--------C-hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc-----CceE------------
Confidence 58899999987 1 46999999999999999999999999999999999853 6888
Q ss_pred CcEEEEccCCCCCCCCCHHH-HHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHH
Q 008534 229 SKIGFVTQDDVLFPHLTVKE-TLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (562)
Q Consensus 229 ~~igyV~Q~~~l~~~lTV~e-nl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA 307 (562)
++||+|++.+|+. |++| ||.|+. ..+. .+.+.++.+ |++.++ +..|||||||| |
T Consensus 155 --~~~v~q~~~lf~~-ti~~~ni~~~~------~~~~-----~~~~~i~~~-L~~gld-------g~~LSgGqkQR---A 209 (305)
T 2v9p_A 155 --LSFANHKSHFWLA-SLADTRAALVD------DATH-----ACWRYFDTY-LRNALD-------GYPVSIDRKHK---A 209 (305)
T ss_dssp --ECGGGTTSGGGGG-GGTTCSCEEEE------EECH-----HHHHHHHHT-TTGGGG-------TCCEECCCSSC---C
T ss_pred --EEEecCccccccc-cHHHHhhccCc------cccH-----HHHHHHHHH-hHccCC-------ccCcCHHHHHH---H
Confidence 4578999999874 8887 887642 1121 355666664 555555 25799999999 9
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHHHHH
Q 008534 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYF 387 (562)
Q Consensus 308 raLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~~~f 387 (562)
|||+++|+||| ||+||+.++..+.. ++|++.. ...||+| +|++|++++.|+++++..+|
T Consensus 210 RAll~~p~iLl----Ts~LD~~~~~~i~~--------------ltH~~~~--~~~aD~i-vl~~G~iv~~g~~~el~~~y 268 (305)
T 2v9p_A 210 AVQIKAPPLLV----TSNIDVQAEDRYLY--------------LHSRVQT--FRFEQPC-TDESGEQPFNITDADWKSFF 268 (305)
T ss_dssp CCEECCCCEEE----EESSCSTTCGGGGG--------------GTTTEEE--EECCCCC-CCC---CCCCCCHHHHHHHH
T ss_pred HHHhCCCCEEE----ECCCCHHHHHHHHH--------------HhCCHHH--HHhCCEE-EEeCCEEEEeCCHHHHHHHH
Confidence 99999999999 99999999888752 1898763 5789999 99999999999999986555
Q ss_pred Hh
Q 008534 388 SS 389 (562)
Q Consensus 388 ~~ 389 (562)
..
T Consensus 269 ~~ 270 (305)
T 2v9p_A 269 VR 270 (305)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=2.1e-26 Score=217.12 Aligned_cols=143 Identities=14% Similarity=0.178 Sum_probs=100.8
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEccCCCCC-CCCCHHHHHHHH
Q 008534 175 GITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLF-PHLTVKETLTYA 253 (562)
Q Consensus 175 ~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~~~igyV~Q~~~l~-~~lTV~enl~~~ 253 (562)
||||++++||+++|+||||||||||++++.+ |...+++ ..+ .++++|++.-. ..-++++++..
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~--------~~~~~~~----d~~---~g~~~~~~~~~~~~~~~~~~~~~- 64 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFK--------PTEVISS----DFC---RGLMSDDENDQTVTGAAFDVLHY- 64 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSC--------GGGEEEH----HHH---HHHHCSSTTCGGGHHHHHHHHHH-
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHcc--------CCeEEcc----HHH---HHHhcCcccchhhHHHHHHHHHH-
Confidence 6899999999999999999999999999753 1111211 111 26677764210 00112222211
Q ss_pred HhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH----
Q 008534 254 ALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDST---- 329 (562)
Q Consensus 254 ~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~---- 329 (562)
.... ....|.....+. ....|||||||++|||||+.+|++|+|||||++||+.
T Consensus 65 ----------------~~~~-~~~~g~~~~~~~------~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R 121 (171)
T 4gp7_A 65 ----------------IVSK-RLQLGKLTVVDA------TNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNR 121 (171)
T ss_dssp ----------------HHHH-HHHTTCCEEEES------CCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTC
T ss_pred ----------------HHHH-HHhCCCeEEEEC------CCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcc
Confidence 1111 122344433332 2346999999999999999999999999999999999
Q ss_pred ------------HHHHHHHHHHHHHHCCcEEEEEecCCC
Q 008534 330 ------------TALRIVQMLQDIAEAGKTVVTTIHQPS 356 (562)
Q Consensus 330 ------------~~~~i~~~L~~l~~~g~Tvii~tH~~~ 356 (562)
....+.+.|++++++|.|+|++||++.
T Consensus 122 ~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~ 160 (171)
T 4gp7_A 122 TDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPE 160 (171)
T ss_dssp SSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHH
T ss_pred cCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHH
Confidence 558889999988777999999999965
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=2.7e-27 Score=253.06 Aligned_cols=172 Identities=16% Similarity=0.184 Sum_probs=135.6
Q ss_pred ccceeeceEEEEeCCe--------------------EEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhcc
Q 008534 169 EKDILNGITGSVNPGE--------------------VLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228 (562)
Q Consensus 169 ~~~iL~~vs~~i~~Ge--------------------~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~ 228 (562)
.+.+|++||++|++|+ ++||+||||||||||+|+|+|... +.+|+|.++|.+.+ +
T Consensus 35 ~~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~--p~~GsI~~~g~~~t---~ 109 (413)
T 1tq4_A 35 SQEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGN--EEEGAAKTGVVEVT---M 109 (413)
T ss_dssp CHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCT--TSTTSCCCCC-------C
T ss_pred CHHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCC--ccCceEEECCeecc---e
Confidence 3469999999999999 999999999999999999999653 56899999998753 2
Q ss_pred CcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChh--HHHHHHH
Q 008534 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG--ERKRVCI 306 (562)
Q Consensus 229 ~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGG--qrqRv~I 306 (562)
.+|++|++ .++.+|+.||+.++.. ..++.++++.+++.+. +.. +. |||| ||||+.|
T Consensus 110 --~~~v~q~~-~~~~ltv~D~~g~~~~------------~~~~~~~L~~~~L~~~-~~~-----~~-lS~G~~~kqrv~l 167 (413)
T 1tq4_A 110 --ERHPYKHP-NIPNVVFWDLPGIGST------------NFPPDTYLEKMKFYEY-DFF-----II-ISATRFKKNDIDI 167 (413)
T ss_dssp --CCEEEECS-SCTTEEEEECCCGGGS------------SCCHHHHHHHTTGGGC-SEE-----EE-EESSCCCHHHHHH
T ss_pred --eEEecccc-ccCCeeehHhhcccch------------HHHHHHHHHHcCCCcc-CCe-----EE-eCCCCccHHHHHH
Confidence 27899986 5677899998766421 1236778888888654 222 23 9999 9999999
Q ss_pred HHHHhh----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-----HCC----cEEEEEecCCCh-HHHhcCCEE
Q 008534 307 GNEIII----------NPSLLFLDEPTSGLDSTTALRIVQMLQDIA-----EAG----KTVVTTIHQPSS-RLFHKFDKL 366 (562)
Q Consensus 307 AraLl~----------~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~-----~~g----~Tvii~tH~~~~-~i~~~~D~i 366 (562)
|++|+. +|++++|||||+|||+.++.++++.|+++. +.| .+|++++|++.. .+.++||+|
T Consensus 168 a~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I 247 (413)
T 1tq4_A 168 AKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKL 247 (413)
T ss_dssp HHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHH
T ss_pred HHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHH
Confidence 999999 999999999999999999999999999984 222 678889998653 245556655
Q ss_pred E
Q 008534 367 I 367 (562)
Q Consensus 367 ~ 367 (562)
.
T Consensus 248 ~ 248 (413)
T 1tq4_A 248 I 248 (413)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.89 E-value=1e-24 Score=207.66 Aligned_cols=144 Identities=19% Similarity=0.157 Sum_probs=101.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCC---h-hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---K-SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPN 260 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~---~-~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~ 260 (562)
.++|+||||||||||+++|+|.+. |.++|.+.. . ..++++||++|++ ++.+++ ++ .
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-------i~~~g~~~~~~~~~~~~~~ig~~~~~~------~~~~~~-~~-~----- 61 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-------KRAIGFWTEEVRDPETKKRTGFRIITT------EGKKKI-FS-S----- 61 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-------GGEEEEEEEEEC------CCEEEEEET------TCCEEE-EE-E-----
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-------CcCCCEEhhhhccccccceeEEEeecC------cHHHHH-HH-h-----
Confidence 589999999999999999999542 444554321 1 3456799999976 222322 10 0
Q ss_pred CccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHH-----HhhCCCEEEEeC--CCCCCCHHHHHH
Q 008534 261 TLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNE-----IIINPSLLFLDE--PTSGLDSTTALR 333 (562)
Q Consensus 261 ~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAra-----Ll~~P~iLlLDE--PTsgLD~~~~~~ 333 (562)
++... +..+ +.++..||||||||++||+| |+.+|++||||| ||++||+.....
T Consensus 62 -----------------~~~~~--~~~~-~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~ 121 (178)
T 1ye8_A 62 -----------------KFFTS--KKLV-GSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDL 121 (178)
T ss_dssp -----------------TTCCC--SSEE-TTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHH
T ss_pred -----------------hcCCc--cccc-cccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHH
Confidence 01110 0111 23456899999999999996 999999999999 999999999999
Q ss_pred HHHHHHHHHHCCcEEEEEec---CCChHHHhcCCEEEEEcCCeEEE
Q 008534 334 IVQMLQDIAEAGKTVVTTIH---QPSSRLFHKFDKLILLGKGSLLY 376 (562)
Q Consensus 334 i~~~L~~l~~~g~Tvii~tH---~~~~~i~~~~D~i~vL~~G~iv~ 376 (562)
+.+.|++ .+.|+|+++| + ...+..+||+ .+|++++
T Consensus 122 l~~~l~~---~~~~~i~~~H~~h~-~~~~~~i~~r----~~~~i~~ 159 (178)
T 1ye8_A 122 VRQIMHD---PNVNVVATIPIRDV-HPLVKEIRRL----PGAVLIE 159 (178)
T ss_dssp HHHHHTC---TTSEEEEECCSSCC-SHHHHHHHTC----TTCEEEE
T ss_pred HHHHHhc---CCCeEEEEEccCCC-chHHHHHHhc----CCcEEEE
Confidence 8888865 4678999986 4 3446667887 5567665
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=99.89 E-value=1.1e-27 Score=232.28 Aligned_cols=181 Identities=18% Similarity=0.152 Sum_probs=118.0
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHH
Q 008534 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKE 248 (562)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~~~igyV~Q~~~l~~~lTV~e 248 (562)
..++++| .+|++|++++|+||||||||||+++|+|.+. ...+.+.+.+.+.....++.++|++|++.+|+.+|+.+
T Consensus 8 ~~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~--~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~ 83 (207)
T 1znw_A 8 TKPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP--NLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQG 83 (207)
T ss_dssp -------------CCCEEEEECSTTSSHHHHHHHHHHHST--TCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTT
T ss_pred CCcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC--ceEEcccccccCCcccccCCCeeEecCHHHHHHHHhcC
Confidence 4578888 7999999999999999999999999999653 22222222222222223567999999998888888888
Q ss_pred HHHHHHhhCC---CCCccHHHHHHHHHHH------HHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCEEEE
Q 008534 249 TLTYAALLRL---PNTLTKQQKEKRAIDV------INELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFL 319 (562)
Q Consensus 249 nl~~~~~~~~---~~~~~~~~~~~~v~~~------l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlL 319 (562)
++.+...... ....++.+.++++.+. ++.+|+.+..+. +++.|| +|+.+|++++|
T Consensus 84 ~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----~~~~lS-----------~l~~~p~~~~L 147 (207)
T 1znw_A 84 ELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKT-----MPEAVT-----------VFLAPPSWQDL 147 (207)
T ss_dssp CEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHH-----CTTSEE-----------EEEECSCHHHH
T ss_pred CceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHh-----cCCcEE-----------EEEECCCHHHH
Confidence 7642210000 0122344444445444 334444333332 234566 89999999999
Q ss_pred eCCCCCC----CHHHHHHHHHHHHHHHH-CCcEEEEEecCCChHHHhcCCEEEEEc
Q 008534 320 DEPTSGL----DSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLG 370 (562)
Q Consensus 320 DEPTsgL----D~~~~~~i~~~L~~l~~-~g~Tvii~tH~~~~~i~~~~D~i~vL~ 370 (562)
||||+++ |+..+.++.+.++++.+ .|.|+|+++|++. ++..+||+|++|.
T Consensus 148 Dep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~-~~~~~~d~i~~l~ 202 (207)
T 1znw_A 148 QARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLE-SACAELVSLLVGT 202 (207)
T ss_dssp HHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHH-HHHHHHHHHHC--
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHH-HHHHHHHHHHHhc
Confidence 9999998 78899999999999974 4899999999975 5788999999984
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.8e-24 Score=222.64 Aligned_cols=173 Identities=16% Similarity=0.171 Sum_probs=131.6
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh--------hc--cCcEEEEccCCC-CC
Q 008534 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--------SL--KSKIGFVTQDDV-LF 241 (562)
Q Consensus 173 L~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--------~~--~~~igyV~Q~~~-l~ 241 (562)
++++||++++|++++|+||||||||||+++|+|.+. +.+|+|.++|.++.+ .+ +..|+||+|++. ++
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~--~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~ 167 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLK--NEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAK 167 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHH--HTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCC
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHH--HcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccC
Confidence 467899999999999999999999999999999653 458999999988742 12 346999999998 88
Q ss_pred CCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCC--EEEE
Q 008534 242 PHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPS--LLFL 319 (562)
Q Consensus 242 ~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~--iLlL 319 (562)
|.+||+||+.++..... . ..+++.+|+.+..+.. +.+|| |||++|||||+.+|+ +|+|
T Consensus 168 ~~~~v~e~l~~~~~~~~--d----------~~lldt~gl~~~~~~~-----~~eLS---kqr~~iaral~~~P~e~lLvL 227 (302)
T 3b9q_A 168 AATVLSKAVKRGKEEGY--D----------VVLCDTSGRLHTNYSL-----MEELI---ACKKAVGKIVSGAPNEILLVL 227 (302)
T ss_dssp HHHHHHHHHHHHHHTTC--S----------EEEECCCCCSSCCHHH-----HHHHH---HHHHHHHTTSTTCCSEEEEEE
T ss_pred HHHHHHHHHHHHHHcCC--c----------chHHhcCCCCcchhHH-----HHHHH---HHHHHHHHhhccCCCeeEEEE
Confidence 88999999998642110 0 1234566776555443 45799 999999999999999 9999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHH-HCCcEEEEEecCCC--------hHHHhcCCEEEEEcCCeE
Q 008534 320 DEPTSGLDSTTALRIVQMLQDIA-EAGKTVVTTIHQPS--------SRLFHKFDKLILLGKGSL 374 (562)
Q Consensus 320 DEPTsgLD~~~~~~i~~~L~~l~-~~g~Tvii~tH~~~--------~~i~~~~D~i~vL~~G~i 374 (562)
| ||+|||+..+. +++. +.|.|+|++||... ..+....+.|.++..|+.
T Consensus 228 D-ptsglD~~~~~------~~~~~~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 228 D-GNTGLNMLPQA------REFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 284 (302)
T ss_dssp E-GGGGGGGHHHH------HHHHHHTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred e-CCCCcCHHHHH------HHHHHhcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCC
Confidence 9 99999998642 4444 34899999999322 123345678888888864
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.9e-25 Score=240.87 Aligned_cols=191 Identities=14% Similarity=0.112 Sum_probs=150.6
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCE---eCC
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDH---PYS 224 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~---~~~ 224 (562)
..++++|+++.|. .+..+|+++ |+|.+|++++|+||||||||||+++|+|.. . +..|.|.++|+ ++.
T Consensus 130 ~~l~~~~v~~~~~-------tg~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~-~-~~~G~i~~~G~r~~ev~ 199 (438)
T 2dpy_A 130 NPLQRTPIEHVLD-------TGVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYT-R-ADVIVVGLIGERGREVK 199 (438)
T ss_dssp CTTTSCCCCSBCC-------CSCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHS-C-CSEEEEEEESCCHHHHH
T ss_pred CceEEeccceecC-------CCceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhccc-C-CCeEEEEEeceecHHHH
Confidence 3578899988762 145799999 999999999999999999999999999954 3 45899999998 443
Q ss_pred h---------hccCcEEEEccC-CCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccC
Q 008534 225 K---------SLKSKIGFVTQD-DVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVR 294 (562)
Q Consensus 225 ~---------~~~~~igyV~Q~-~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~ 294 (562)
. .+++.++||+|+ +.+++.+||.+|+.+.+..... ... ......+ ...
T Consensus 200 ~~~~~~~~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae~~~~-------~~~---------~v~~~ld------~l~ 257 (438)
T 2dpy_A 200 DFIENILGPDGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRD-------RGQ---------HVLLIMD------SLT 257 (438)
T ss_dssp HHHHTTTHHHHHHTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHT-------TTC---------EEEEEEE------CHH
T ss_pred HHHHhhccccccCceEEEEECCCCCHHHHHHHHHHHHHHHHHHHh-------CCC---------CHHHHHH------hHH
Confidence 2 256779999995 5567788999999876532100 000 0001111 135
Q ss_pred CCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH---C-Cc-----EEEEEecCCChHHHhcCCE
Q 008534 295 GVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE---A-GK-----TVVTTIHQPSSRLFHKFDK 365 (562)
Q Consensus 295 ~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~---~-g~-----Tvii~tH~~~~~i~~~~D~ 365 (562)
.||+|| |||+|| +.+|++ |+|||+.+...+.+.+.++.+ + |. ||++++||++ ...||+
T Consensus 258 ~lS~g~-qrvslA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~---~~iad~ 324 (438)
T 2dpy_A 258 RYAMAQ-REIALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ---DPIADS 324 (438)
T ss_dssp HHHHHH-HHHHHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC---CHHHHH
T ss_pred HHHHHH-HHHHHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc---chhhce
Confidence 699999 999999 889988 999999999999999999865 3 64 9999999987 367999
Q ss_pred EEEEcCCeEEEecChHHH
Q 008534 366 LILLGKGSLLYFGKASEA 383 (562)
Q Consensus 366 i~vL~~G~iv~~G~~~el 383 (562)
+++|.+|+++..|++.++
T Consensus 325 v~~l~dG~Ivl~~~~~~~ 342 (438)
T 2dpy_A 325 ARAILDGHIVLSRRLAEA 342 (438)
T ss_dssp HHHHSSEEEEECHHHHHT
T ss_pred EEEEeCcEEEEeCCHHHc
Confidence 999999999999988775
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=9.2e-22 Score=226.11 Aligned_cols=108 Identities=25% Similarity=0.400 Sum_probs=94.1
Q ss_pred HHHHHHHHHcCCCcc-ccccccCcccCCCChhHHHHHHHHHHHhhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCC
Q 008534 269 KRAIDVINELGLERC-QDTMIGGSFVRGVSGGERKRVCIGNEIIINP--SLLFLDEPTSGLDSTTALRIVQMLQDIAEAG 345 (562)
Q Consensus 269 ~~v~~~l~~lgL~~~-~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P--~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g 345 (562)
.++. .+..+||.+. .++ .+.+|||||||||.||++|..+| .||||||||++||+.....+++.|++|.+.|
T Consensus 358 ~rl~-~L~~vGL~~l~l~r-----~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~G 431 (842)
T 2vf7_A 358 KRLD-VLLHLGLGYLGLDR-----STPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGG 431 (842)
T ss_dssp HHHH-HHHHTTCTTSBTTC-----BGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTT
T ss_pred HHHH-HHHhCCCCcCCccC-----CcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHcC
Confidence 3443 5778898753 343 45789999999999999999999 5999999999999999999999999998889
Q ss_pred cEEEEEecCCChHHHhcCCEEEEE------cCCeEEEecChHHHH
Q 008534 346 KTVVTTIHQPSSRLFHKFDKLILL------GKGSLLYFGKASEAM 384 (562)
Q Consensus 346 ~Tvii~tH~~~~~i~~~~D~i~vL------~~G~iv~~G~~~el~ 384 (562)
.|||+|+|++. +...||+|++| ++|++++.|+++++.
T Consensus 432 ~TVIvVeHdl~--~l~~aD~ii~lgpgaG~~~G~iv~~g~~~~~~ 474 (842)
T 2vf7_A 432 NSLFVVEHDLD--VIRRADWLVDVGPEAGEKGGEILYSGPPEGLK 474 (842)
T ss_dssp CEEEEECCCHH--HHTTCSEEEEECSSSGGGCCSEEEEECGGGGG
T ss_pred CEEEEEcCCHH--HHHhCCEEEEeCCCcccCCCEEEEecCHHHHH
Confidence 99999999974 45789999999 799999999988764
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.3e-23 Score=220.89 Aligned_cols=172 Identities=16% Similarity=0.186 Sum_probs=132.1
Q ss_pred eceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh--------hc--cCcEEEEccCCC-CCC
Q 008534 174 NGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--------SL--KSKIGFVTQDDV-LFP 242 (562)
Q Consensus 174 ~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--------~~--~~~igyV~Q~~~-l~~ 242 (562)
..+||++++|++++|+||||||||||++.|+|.+. +.+|+|.++|.++.+ .+ +..|+|++|++. ++|
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~--~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p 225 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLK--NEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKA 225 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHH--HTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhcc--ccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccCh
Confidence 46889999999999999999999999999999653 358999999988742 12 356999999998 888
Q ss_pred CCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCC--EEEEe
Q 008534 243 HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPS--LLFLD 320 (562)
Q Consensus 243 ~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~--iLlLD 320 (562)
.+||+||+.++..... . ..+++.+|+.+..+.. +.+|| |||++|||+|+.+|+ +|+||
T Consensus 226 ~~tv~e~l~~~~~~~~--d----------~~lldt~Gl~~~~~~~-----~~eLS---kqr~~iaral~~~P~e~lLvLD 285 (359)
T 2og2_A 226 ATVLSKAVKRGKEEGY--D----------VVLCDTSGRLHTNYSL-----MEELI---ACKKAVGKIVSGAPNEILLVLD 285 (359)
T ss_dssp HHHHHHHHHHHHHTTC--S----------EEEEECCCCSSCCHHH-----HHHHH---HHHHHHHHHSTTCCSEEEEEEE
T ss_pred hhhHHHHHHHHHhCCC--H----------HHHHHhcCCChhhhhH-----HHHHH---HHHHHHHHHHhcCCCceEEEEc
Confidence 8999999998642110 0 1234556776554443 45799 999999999999999 99999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHH-CCcEEEEEecCCC--------hHHHhcCCEEEEEcCCeE
Q 008534 321 EPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPS--------SRLFHKFDKLILLGKGSL 374 (562)
Q Consensus 321 EPTsgLD~~~~~~i~~~L~~l~~-~g~Tvii~tH~~~--------~~i~~~~D~i~vL~~G~i 374 (562)
||+|||+..+. +++.+ .|.|+|++||.-. ..+....+.|.++..|+.
T Consensus 286 -pttglD~~~~~------~~~~~~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 286 -GNTGLNMLPQA------REFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 341 (359)
T ss_dssp -GGGGGGGHHHH------HHHHHHTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred -CCCCCCHHHHH------HHHHHhcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCC
Confidence 99999998653 34443 4899999999411 123345678888888864
|
| >2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.7e-21 Score=204.86 Aligned_cols=86 Identities=15% Similarity=0.146 Sum_probs=77.3
Q ss_pred CcccC-CCChhHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHH
Q 008534 290 GSFVR-GVSGGERKRVCIGNEII---------INPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRL 359 (562)
Q Consensus 290 ~~~~~-~LSGGqrqRv~IAraLl---------~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i 359 (562)
+..++ .||||||||++||++|+ .+|+||||||||++||+..+..+++.|+++. .|+|++||. ..
T Consensus 259 ~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~---qt~i~~th~-~~-- 332 (359)
T 2o5v_A 259 DFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP---QAIVTGTEL-AP-- 332 (359)
T ss_dssp TEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS---EEEEEESSC-CT--
T ss_pred CcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC---cEEEEEEec-cc--
Confidence 44566 79999999999999999 8999999999999999999999999998763 699999994 42
Q ss_pred HhcCCEEEEEcCCeEEEecChHHH
Q 008534 360 FHKFDKLILLGKGSLLYFGKASEA 383 (562)
Q Consensus 360 ~~~~D~i~vL~~G~iv~~G~~~el 383 (562)
.||++++|++|+++..|+++++
T Consensus 333 --~~~~i~~l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 333 --GAALTLRAQAGRFTPVADEEMQ 354 (359)
T ss_dssp --TCSEEEEEETTEEEECCCTTTS
T ss_pred --cCCEEEEEECCEEEecCCHHHH
Confidence 7999999999999999998875
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.8e-23 Score=211.94 Aligned_cols=147 Identities=19% Similarity=0.239 Sum_probs=95.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChh-ccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCcc
Q 008534 185 VLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS-LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLT 263 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~-~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~ 263 (562)
.++|+||||||||||+|+|+|... +.+|+|.++|.++... .++.++|++|++.+++.+||.||+.|+...... ..
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~--~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~-~~- 79 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV--SRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNE-NC- 79 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC--------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCT-TC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC--CCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccH-HH-
Confidence 489999999999999999999543 4589999999987543 456799999999999999999999987543211 11
Q ss_pred HHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 008534 264 KQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE 343 (562)
Q Consensus 264 ~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~ 343 (562)
.+.+.+.+. .+..+.. +.+||||||||++||||++. ++|||||+.|||+.. .+.++.+.+
T Consensus 80 ----~~~i~~~~~----~~~~~~~-----~~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD----~~~l~~L~~ 139 (270)
T 3sop_A 80 ----WEPIEKYIN----EQYEKFL-----KEEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD----LEFMKHLSK 139 (270)
T ss_dssp ----SHHHHHHHH----HHHHHHH-----HHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH----HHHHHHHHT
T ss_pred ----HHHHHHHHH----HHHHhhh-----HHhcCcccchhhhhheeeee---eEEEecCCCcCCHHH----HHHHHHHHh
Confidence 112223332 1222222 35799999999999999876 999999999999987 455556655
Q ss_pred CCcEEEEEecCCC
Q 008534 344 AGKTVVTTIHQPS 356 (562)
Q Consensus 344 ~g~Tvii~tH~~~ 356 (562)
. .+||+++|..+
T Consensus 140 ~-~~vI~Vi~K~D 151 (270)
T 3sop_A 140 V-VNIIPVIAKAD 151 (270)
T ss_dssp T-SEEEEEETTGG
T ss_pred c-CcEEEEEeccc
Confidence 5 89999999743
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B | Back alignment and structure |
|---|
Probab=99.85 E-value=3.2e-21 Score=201.18 Aligned_cols=78 Identities=27% Similarity=0.349 Sum_probs=69.9
Q ss_pred cccCCCChhHHH------HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCC
Q 008534 291 SFVRGVSGGERK------RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFD 364 (562)
Q Consensus 291 ~~~~~LSGGqrq------Rv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D 364 (562)
..+..||||||| |+++|++|+.+|++|||||||+|||+..+..+++.|+++.+.|.|||++||++ ++...||
T Consensus 244 ~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~--~~~~~~d 321 (339)
T 3qkt_A 244 RPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELKDAAD 321 (339)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCG--GGGGGCS
T ss_pred CChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChH--HHHHhCC
Confidence 346789999999 67778888889999999999999999999999999999877789999999994 3678999
Q ss_pred EEEEEc
Q 008534 365 KLILLG 370 (562)
Q Consensus 365 ~i~vL~ 370 (562)
+|++|+
T Consensus 322 ~~~~l~ 327 (339)
T 3qkt_A 322 HVIRIS 327 (339)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999986
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.85 E-value=6.5e-26 Score=222.28 Aligned_cols=172 Identities=16% Similarity=0.144 Sum_probs=112.1
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh-----hccCcEEEEccCCCCCCCC
Q 008534 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-----SLKSKIGFVTQDDVLFPHL 244 (562)
Q Consensus 170 ~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~-----~~~~~igyV~Q~~~l~~~l 244 (562)
..-|+||||+|++|++++|+||||||||||+++|+|.+ | |+|.+ |.++.. ..++.++|++|++.+|+.+
T Consensus 10 ~~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~--p---G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 83 (218)
T 1z6g_A 10 HSSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF--P---NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDK 83 (218)
T ss_dssp ------------CCCCEEEECSTTSSHHHHHHHHHHHS--T---TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHH
T ss_pred cccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC--C---CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHh
Confidence 35799999999999999999999999999999999954 3 88999 766521 2356799999998777643
Q ss_pred C-HHHHHHHHHhhCC-CCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHH-----HHHHhhCCCEE
Q 008534 245 T-VKETLTYAALLRL-PNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI-----GNEIIINPSLL 317 (562)
Q Consensus 245 T-V~enl~~~~~~~~-~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~I-----AraLl~~P~iL 317 (562)
+ +.+++.++. ... ....+. ..+.++++...+ ..+. ..|||||+||++| +++|+.+|+++
T Consensus 84 ~~~~~~l~~~~-~~~~~~g~~~----~~i~~~l~~~~~-----~il~----~~lsggq~qR~~i~~~~~~~~ll~~~~~~ 149 (218)
T 1z6g_A 84 LKNEDFLEYDN-YANNFYGTLK----SEYDKAKEQNKI-----CLFE----MNINGVKQLKKSTHIKNALYIFIKPPSTD 149 (218)
T ss_dssp HHTTCEEEEEE-ETTEEEEEEH----HHHHHHHHTTCE-----EEEE----ECHHHHHHHTTCSSCCSCEEEEEECSCHH
T ss_pred hhccchhhhhh-cccccCCCcH----HHHHHHHhCCCc-----EEEE----ecHHHHHHHHHHhcCCCcEEEEEeCcCHH
Confidence 3 112221110 000 001122 235556654322 1111 4699999999999 89999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcC
Q 008534 318 FLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK 371 (562)
Q Consensus 318 lLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~ 371 (562)
+|||||+++|..+...+.+.|.++.+ ++| ++| + ..||.|+++++
T Consensus 150 ~Lde~~~~~d~~~~~~i~~~l~~~~~-~~~---~~h-~-----~~~d~iiv~~~ 193 (218)
T 1z6g_A 150 VLLSRLLTRNTENQEQIQKRMEQLNI-ELH---EAN-L-----LNFNLSIINDD 193 (218)
T ss_dssp HHHHHHHHTCCCCHHHHHHHHHHHHH-HHH---HHT-T-----SCCSEEEECSS
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHH-HHH---hhc-c-----cCCCEEEECCC
Confidence 99999999999999999999988754 344 456 2 45788877754
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=99.85 E-value=5.8e-23 Score=213.91 Aligned_cols=131 Identities=20% Similarity=0.261 Sum_probs=105.7
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh--hccCcEEEEccCCCCCCCCCHHHH
Q 008534 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SLKSKIGFVTQDDVLFPHLTVKET 249 (562)
Q Consensus 172 iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--~~~~~igyV~Q~~~l~~~lTV~en 249 (562)
+++++|+.+++|++++|+||||||||||+++|+|.+ + +.+|.|+++|.+... ..++.+++++
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~-~-~~~g~i~i~~~~e~~~~~~~~~i~~~~-------------- 223 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFI-P-KEERIISIEDTEEIVFKHHKNYTQLFF-------------- 223 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGS-C-TTSCEEEEESSCCCCCSSCSSEEEEEC--------------
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCC-c-CCCcEEEECCeeccccccchhEEEEEe--------------
Confidence 799999999999999999999999999999999854 3 458999999864211 1223344332
Q ss_pred HHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 008534 250 LTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDST 329 (562)
Q Consensus 250 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~ 329 (562)
+ |||+||++||+||..+|++|+|||||+
T Consensus 224 ---------------------------------------------g--gg~~~r~~la~aL~~~p~ilildE~~~----- 251 (330)
T 2pt7_A 224 ---------------------------------------------G--GNITSADCLKSCLRMRPDRIILGELRS----- 251 (330)
T ss_dssp ---------------------------------------------B--TTBCHHHHHHHHTTSCCSEEEECCCCS-----
T ss_pred ---------------------------------------------C--CChhHHHHHHHHhhhCCCEEEEcCCCh-----
Confidence 1 899999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeE
Q 008534 330 TALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374 (562)
Q Consensus 330 ~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~i 374 (562)
.++.+.|+.+...+.|+|+++|+++ ....|||+++|.+|..
T Consensus 252 --~e~~~~l~~~~~g~~tvi~t~H~~~--~~~~~dri~~l~~g~~ 292 (330)
T 2pt7_A 252 --SEAYDFYNVLCSGHKGTLTTLHAGS--SEEAFIRLANMSSSNS 292 (330)
T ss_dssp --THHHHHHHHHHTTCCCEEEEEECSS--HHHHHHHHHHHHHTSG
T ss_pred --HHHHHHHHHHhcCCCEEEEEEcccH--HHHHhhhheehhcCCc
Confidence 2456777776643458999999976 4678999999988853
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=3.2e-24 Score=221.77 Aligned_cols=145 Identities=12% Similarity=0.131 Sum_probs=111.1
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEE-----------------------EeCCeEEEEECCCCCcHHHHHHHHH
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGS-----------------------VNPGEVLALMGPSGSGKTTLLNLLS 204 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~-----------------------i~~Ge~~alvGpsGsGKSTLl~~L~ 204 (562)
..|+++||++.|. ++++++++. +++|+++||+||||||||||+++|+
T Consensus 42 ~~i~~~~v~~~y~----------p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~ 111 (312)
T 3aez_A 42 EQIDLLEVEEVYL----------PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQ 111 (312)
T ss_dssp CCCCHHHHHHTHH----------HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHH
T ss_pred CeEEeeehhhhhh----------hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHH
Confidence 3588999988761 455665554 8999999999999999999999999
Q ss_pred cCCCCCCCccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccc
Q 008534 205 GRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQ 284 (562)
Q Consensus 205 G~l~~~~~~G~I~i~G~~~~~~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~ 284 (562)
|.+. +..|. +.++||+|++.+++. |++||+.+.... +.+.....+.+.++++.++ ....
T Consensus 112 gll~--~~~G~-------------~~v~~v~qd~~~~~~-t~~e~~~~~~~~----g~~~~~d~~~~~~~L~~l~-~~~~ 170 (312)
T 3aez_A 112 ALLA--RWDHH-------------PRVDLVTTDGFLYPN-AELQRRNLMHRK----GFPESYNRRALMRFVTSVK-SGSD 170 (312)
T ss_dssp HHHH--TSTTC-------------CCEEEEEGGGGBCCH-HHHHHTTCTTCT----TSGGGBCHHHHHHHHHHHH-TTCS
T ss_pred hhcc--ccCCC-------------CeEEEEecCccCCcc-cHHHHHHHHHhc----CCChHHHHHHHHHHHHHhC-CCcc
Confidence 9653 23342 469999999999987 999998653211 1222223455677888776 3333
Q ss_pred cccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 008534 285 DTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDS 328 (562)
Q Consensus 285 ~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~ 328 (562)
+.. +..|||||+||+++|++++.+|+|||||||+..+|+
T Consensus 171 ~~~-----~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~ 209 (312)
T 3aez_A 171 YAC-----APVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTG 209 (312)
T ss_dssp CEE-----EEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred cCC-----cccCChhhhhhhhhHHHhccCCCEEEECCccccCCc
Confidence 332 357999999999999999999999999999999986
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.4e-21 Score=224.34 Aligned_cols=163 Identities=23% Similarity=0.386 Sum_probs=122.9
Q ss_pred HHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCC---ccH--HHHHHHHHH
Q 008534 199 LLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNT---LTK--QQKEKRAID 273 (562)
Q Consensus 199 Ll~~L~G~l~~~~~~G~I~i~G~~~~~~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~---~~~--~~~~~~v~~ 273 (562)
+..|..+|+. +..|+|.++|+++.. +..++|.+++.|......+.. ... .....+..+
T Consensus 384 C~~C~g~rl~--~~~~~V~i~G~~i~~---------------~~~~~v~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 446 (916)
T 3pih_A 384 CSVCGGRRLN--REALSVKINGLNIHE---------------FTELSISEELEFLKNLNLTEREREIVGELLKEIEKRLE 446 (916)
T ss_dssp CTTTCSCCBC--TTGGGEEETTEEHHH---------------HHHSBHHHHHHHHHSCCCCTTTTTTHHHHHHHHHHHHH
T ss_pred chhcccccCC--hHhcCcEECCccHHH---------------hhhCCHHHHHHHHHhccCcHHHHHHHHhhHHHHHHHHH
Confidence 3344444443 457999999987632 234688888877544322211 000 011123456
Q ss_pred HHHHcCCCcc-ccccccCcccCCCChhHHHHHHHHHHHhhCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEE
Q 008534 274 VINELGLERC-QDTMIGGSFVRGVSGGERKRVCIGNEIIINPS--LLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVT 350 (562)
Q Consensus 274 ~l~~lgL~~~-~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~--iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii 350 (562)
.+..+||... .++ .+.+|||||||||+|||||+.+|+ ||||||||+|||+.....+++.|+++.+.|.|||+
T Consensus 447 ~L~~vgL~~l~l~r-----~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~Tviv 521 (916)
T 3pih_A 447 FLVDVGLEYLTLSR-----SATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIV 521 (916)
T ss_dssp HHHTTTCTTCBTTS-----BGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEE
T ss_pred HHHHcCCccccccC-----CcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEE
Confidence 7888898753 343 456899999999999999999887 99999999999999999999999999888999999
Q ss_pred EecCCChHHHhcCCEEEEE------cCCeEEEecChHHHHH
Q 008534 351 TIHQPSSRLFHKFDKLILL------GKGSLLYFGKASEAMA 385 (562)
Q Consensus 351 ~tH~~~~~i~~~~D~i~vL------~~G~iv~~G~~~el~~ 385 (562)
|+|++. +...||+|++| ++|++++.|++++++.
T Consensus 522 VtHd~~--~~~~aD~ii~lgpgag~~~G~iv~~G~~~e~~~ 560 (916)
T 3pih_A 522 VEHDEE--VIRNADHIIDIGPGGGTNGGRVVFQGTVDELLK 560 (916)
T ss_dssp ECCCHH--HHHTCSEEEEEESSSGGGCSEEEEEECHHHHHH
T ss_pred EeCCHH--HHHhCCEEEEEcCCcccCCCEEEEeechhhhhc
Confidence 999974 34569999999 9999999999998753
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=1.4e-22 Score=201.48 Aligned_cols=180 Identities=10% Similarity=0.087 Sum_probs=111.7
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEccCCCCCCCCCHH
Q 008534 168 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVK 247 (562)
Q Consensus 168 ~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~~~igyV~Q~~~l~~~lTV~ 247 (562)
+++.+|+||||++++|+++||+||||||||||+++|+|.+ |.+.++ ..++.++|++|++ +++.+|+.
T Consensus 10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l------G~~~~~------~~~~~i~~v~~d~-~~~~l~~~ 76 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL------GQNEVE------QRQRKVVILSQDR-FYKVLTAE 76 (245)
T ss_dssp -------------CCSEEEEEECSTTSSHHHHHHHHHHHH------TGGGSC------GGGCSEEEEEGGG-GBCCCCHH
T ss_pred CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh------chhccc------ccCCceEEEeCCc-CccccCHh
Confidence 4678999999999999999999999999999999999843 333333 3467899999996 67789999
Q ss_pred HHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 008534 248 ETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLD 327 (562)
Q Consensus 248 enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD 327 (562)
+++.+......... +.....+.+.+.++.+ .+..+. .+..||+||+||+.+ ++++.+|+++|||||...+|
T Consensus 77 ~~~~~~~~~~~~~~-~~~~~~~~~~~~L~~l--~~~~~~-----~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~ 147 (245)
T 2jeo_A 77 QKAKALKGQYNFDH-PDAFDNDLMHRTLKNI--VEGKTV-----EVPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYS 147 (245)
T ss_dssp HHHHHHTTCCCTTS-GGGBCHHHHHHHHHHH--HTTCCE-----EECCEETTTTEECSS-CEEECCCSEEEEECTTTTTS
T ss_pred HhhhhhccCCCCCC-cccccHHHHHHHHHHH--HCCCCe-----ecccccccccCccCc-eEEecCCCEEEEeCcccccc
Confidence 99987543211100 1111122344455443 222332 346799999999988 58888999999999988888
Q ss_pred HHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHh-cCCEEEEEcCCeEEEecChHHHHHHHH
Q 008534 328 STTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFH-KFDKLILLGKGSLLYFGKASEAMAYFS 388 (562)
Q Consensus 328 ~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~-~~D~i~vL~~G~iv~~G~~~el~~~f~ 388 (562)
.. +.++ .+.+|++++|+.. .+.+ +++++ ++|+ +.+++.+.+.
T Consensus 148 ~~--------l~~~--~~~~i~v~th~~~-~~~r~~~r~~---~~G~-----~~e~~~~~~~ 190 (245)
T 2jeo_A 148 QE--------IRDM--FHLRLFVDTDSDV-RLSRRVLRDV---RRGR-----DLEQILTQYT 190 (245)
T ss_dssp HH--------HHTT--CSEEEEEECCHHH-HHHHHHHHHT---C--------CHHHHHHHHH
T ss_pred HH--------HHHh--cCeEEEEECCHHH-HHHHHHHHHH---HcCC-----CHHHHHHHHH
Confidence 64 2222 3789999999732 3333 34434 6664 5677765544
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=8.5e-22 Score=200.73 Aligned_cols=185 Identities=15% Similarity=0.119 Sum_probs=121.6
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCcc-EEEECCEeCC-hhccCcEEEEccCCCCCCCCCH
Q 008534 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGG-SITYNDHPYS-KSLKSKIGFVTQDDVLFPHLTV 246 (562)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G-~I~i~G~~~~-~~~~~~igyV~Q~~~l~~~lTV 246 (562)
+.++|+++++.+++|++++|+||||||||||++.|+|.+. +.+| .|.+.+.... ..+++++.++.++.. +++
T Consensus 21 g~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~--~~~G~~v~~~~~e~~~~~~~~r~~~~~~~~~----~~~ 94 (296)
T 1cr0_A 21 GCTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWG--TAMGKKVGLAMLEESVEETAEDLIGLHNRVR----LRQ 94 (296)
T ss_dssp SCTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHH--HTSCCCEEEEESSSCHHHHHHHHHHHHTTCC----GGG
T ss_pred CHHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHH--HHcCCeEEEEeCcCCHHHHHHHHHHHHcCCC----hhh
Confidence 3468999999999999999999999999999999998643 2346 6655443333 233334444444322 233
Q ss_pred HHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhH-HHHHHHHHHHhhCCCEEEEeCCCC-
Q 008534 247 KETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGE-RKRVCIGNEIIINPSLLFLDEPTS- 324 (562)
Q Consensus 247 ~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGq-rqRv~IAraLl~~P~iLlLDEPTs- 324 (562)
.+++..+. ++.++..+.+.++++..++. ..+ .+..+|.+| +||+. |+++..+|++||+||||+
T Consensus 95 ~~~l~~~~-------~~~~~~~~~~~~~l~~~~l~-i~~------~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~ 159 (296)
T 1cr0_A 95 SDSLKREI-------IENGKFDQWFDELFGNDTFH-LYD------SFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIV 159 (296)
T ss_dssp CHHHHHHH-------HHHTHHHHHHHHHHSSSCEE-EEC------CCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC--
T ss_pred ccccccCC-------CCHHHHHHHHHHHhccCCEE-EEC------CCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCcccc
Confidence 34444321 11222333344444322221 111 124688998 66776 999999999999999999
Q ss_pred --C---CCH-HHHHHHHHHHHHHHHC-CcEEEEEecCCC-h--------------------HHHhcCCEEEEEcCCeE
Q 008534 325 --G---LDS-TTALRIVQMLQDIAEA-GKTVVTTIHQPS-S--------------------RLFHKFDKLILLGKGSL 374 (562)
Q Consensus 325 --g---LD~-~~~~~i~~~L~~l~~~-g~Tvii~tH~~~-~--------------------~i~~~~D~i~vL~~G~i 374 (562)
+ +|. .....+++.|++++++ |.|||+++|+.. . .+...||+|++|++|+.
T Consensus 160 ~~~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 160 VSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 5 455 6678899999999765 999999999951 2 46779999999999874
|
| >4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.3e-20 Score=207.29 Aligned_cols=78 Identities=21% Similarity=0.363 Sum_probs=71.2
Q ss_pred ccCCC-ChhHHHHHHHHHHHhhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEE
Q 008534 292 FVRGV-SGGERKRVCIGNEIIINP--SLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLIL 368 (562)
Q Consensus 292 ~~~~L-SGGqrqRv~IAraLl~~P--~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~v 368 (562)
.+..| ||||||||+||++|+.+| ++|||||||+|||+.++..|.+.|+++++ |+|||+|||++. +...||++++
T Consensus 393 ~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~-~~~vi~itH~~~--~~~~~d~~~~ 469 (517)
T 4ad8_A 393 PLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD-TRQVLVVTHLAQ--IAARAHHHYK 469 (517)
T ss_dssp BSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH-HSEEEEECCCHH--HHHHSSEEEE
T ss_pred cHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH--HHHhCCEEEE
Confidence 35667 999999999999999999 99999999999999999999999999987 899999999965 4567999999
Q ss_pred EcCC
Q 008534 369 LGKG 372 (562)
Q Consensus 369 L~~G 372 (562)
|++|
T Consensus 470 ~~~~ 473 (517)
T 4ad8_A 470 VEKQ 473 (517)
T ss_dssp EECC
T ss_pred Eecc
Confidence 9655
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=9.7e-22 Score=205.99 Aligned_cols=191 Identities=15% Similarity=0.172 Sum_probs=138.5
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
.++.+++++.|. .+..+|+++ |+|.+|++++|+||||||||||+++|+|... +..|.|.+.|++..+
T Consensus 45 ~i~~~~l~~~~~-------tg~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~--~~~g~i~~~G~~~~ev~~ 114 (347)
T 2obl_A 45 PLLRQVIDQPFI-------LGVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGAS--ADIIVLALIGERGREVNE 114 (347)
T ss_dssp STTCCCCCSEEC-------CSCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSC--CSEEEEEEESCCHHHHHH
T ss_pred CeeecccceecC-------CCCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCC--CCEEEEEEecccHHHHHH
Confidence 577888988872 245799999 9999999999999999999999999999643 457999998875211
Q ss_pred --------hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCC
Q 008534 226 --------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVS 297 (562)
Q Consensus 226 --------~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LS 297 (562)
.+++.+.+++|.+ .+..+.+..... ...+.+.....+ .+..+--..+..||
T Consensus 115 ~i~~~~~~~~~~~v~~~~~~~-----~~~~~r~~~~~~------------~~~~ae~~~~~~----~~vl~~ld~~~~lS 173 (347)
T 2obl_A 115 FLALLPQSTLSKCVLVVTTSD-----RPALERMKAAFT------------ATTIAEYFRDQG----KNVLLMMDSVTRYA 173 (347)
T ss_dssp HHTTSCHHHHTTEEEEEECTT-----SCHHHHHHHHHH------------HHHHHHHHHTTT----CEEEEEEETHHHHH
T ss_pred HHHhhhhhhhhceEEEEECCC-----CCHHHHHHHHHH------------HHHHHHHHHhcc----ccHHHHHhhHHHHH
Confidence 1334578888753 233333321110 001111111111 11111002346799
Q ss_pred hhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH--CCc-----EEEEEecCCChHHHhcCCEEEEEc
Q 008534 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE--AGK-----TVVTTIHQPSSRLFHKFDKLILLG 370 (562)
Q Consensus 298 GGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~--~g~-----Tvii~tH~~~~~i~~~~D~i~vL~ 370 (562)
+|| |||++| +.+|++ |+|||+.....+.+.++++.+ .|. ||++++|+++. .+||++++|.
T Consensus 174 ~g~-r~v~la---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~~---~i~d~v~~i~ 240 (347)
T 2obl_A 174 RAA-RDVGLA---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVND---PIGDEVRSIL 240 (347)
T ss_dssp HHH-HHHHHH---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCCC---HHHHHHHHHC
T ss_pred HHH-HHHHHH---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCCC---hhhhheEEee
Confidence 999 899999 688887 999999999999999999864 477 89999999873 5799999999
Q ss_pred CCeEEEecChHHH
Q 008534 371 KGSLLYFGKASEA 383 (562)
Q Consensus 371 ~G~iv~~G~~~el 383 (562)
+|+|+..|+.+++
T Consensus 241 dG~Ivl~~~l~~~ 253 (347)
T 2obl_A 241 DGHIVLTRELAEE 253 (347)
T ss_dssp SEEEEBCHHHHTT
T ss_pred CcEEEEeCCHHHc
Confidence 9999999988775
|
| >2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* | Back alignment and structure |
|---|
Probab=99.80 E-value=4.5e-21 Score=225.19 Aligned_cols=172 Identities=17% Similarity=0.161 Sum_probs=121.1
Q ss_pred eEEEEe-----EEEEEeecccCCccccceeeceEEEEeC-------CeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEE
Q 008534 149 YLKFTD-----VTYKVILKGMTSSEEKDILNGITGSVNP-------GEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSI 216 (562)
Q Consensus 149 ~l~~~n-----vs~~y~~~~~~~~~~~~iL~~vs~~i~~-------Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I 216 (562)
.|+++| |++.|. +++.|++||+|.+++ |++++|+||||||||||||+| |.+.
T Consensus 750 ~l~i~~~rHP~l~~~~~-------~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~-------- 813 (1022)
T 2o8b_B 750 FLELKGSRHPCITKTFF-------GDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLA-------- 813 (1022)
T ss_dssp CEEEEEECCCC-------------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHH--------
T ss_pred eEEEEeccccEEEEEec-------CCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHH--------
Confidence 599999 888762 245799999999987 999999999999999999999 8542
Q ss_pred EECCEeCChhccCcEE-EEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCC
Q 008534 217 TYNDHPYSKSLKSKIG-FVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRG 295 (562)
Q Consensus 217 ~i~G~~~~~~~~~~ig-yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~ 295 (562)
+..++| ||||++. .+||.|+|.. .+|+.+.... ....
T Consensus 814 ----------~~aqiG~~Vpq~~~---~l~v~d~I~~------------------------rig~~d~~~~-----~~st 851 (1022)
T 2o8b_B 814 ----------VMAQMGCYVPAEVC---RLTPIDRVFT------------------------RLGASDRIMS-----GEST 851 (1022)
T ss_dssp ----------HHHTTTCCEESSEE---EECCCSBEEE------------------------ECC--------------CH
T ss_pred ----------HHhheeEEeccCcC---CCCHHHHHHH------------------------HcCCHHHHhh-----chhh
Confidence 123455 9999863 3566555421 1122221111 1235
Q ss_pred CChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH-HHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCe
Q 008534 296 VSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTA-LRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGS 373 (562)
Q Consensus 296 LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~-~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~ 373 (562)
+|+++++ +++|++++.+|+++||||||+|+|+... ..++..|+.+.++ |.++|++||++. .+...+|++.++ +|+
T Consensus 852 f~~em~~-~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~e-l~~~~~d~~~v~-~g~ 928 (1022)
T 2o8b_B 852 FFVELSE-TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHS-LVEDYSQNVAVR-LGH 928 (1022)
T ss_dssp HHHHHHH-HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHH-HHHHTSSCSSEE-EEE
T ss_pred hHHHHHH-HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHH-HHHHhCCcceee-cCe
Confidence 7777765 9999999999999999999999999984 5578899998876 899999999964 455679999887 588
Q ss_pred EE--EecChH
Q 008534 374 LL--YFGKAS 381 (562)
Q Consensus 374 iv--~~G~~~ 381 (562)
+. +.|+++
T Consensus 929 ~~~~~~~~~~ 938 (1022)
T 2o8b_B 929 MACMVENECE 938 (1022)
T ss_dssp EEEC------
T ss_pred EEEEEecCcc
Confidence 87 555543
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=1.3e-22 Score=223.66 Aligned_cols=167 Identities=15% Similarity=0.130 Sum_probs=117.4
Q ss_pred ccceeeceEE-EEeCCeEEEEECCCCCcHHHHHHH--HHcCCCCCCCccEEEECCEeCCh---hccCcEEEEccCCCCCC
Q 008534 169 EKDILNGITG-SVNPGEVLALMGPSGSGKTTLLNL--LSGRLMEPTVGGSITYNDHPYSK---SLKSKIGFVTQDDVLFP 242 (562)
Q Consensus 169 ~~~iL~~vs~-~i~~Ge~~alvGpsGsGKSTLl~~--L~G~l~~~~~~G~I~i~G~~~~~---~~~~~igyV~Q~~~l~~ 242 (562)
+.++|++|++ .|++|++++|+||||||||||+++ ++|... +.+|.|+++|.+... ..++.+||++|++...+
T Consensus 24 g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~--~~~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~~ 101 (525)
T 1tf7_A 24 MIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIE--FDEPGVFVTFEETPQDIIKNARSFGWDLAKLVDEG 101 (525)
T ss_dssp CCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHH--HCCCEEEEESSSCHHHHHHHHGGGTCCHHHHHHTT
T ss_pred CchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHh--CCCCEEEEEEeCCHHHHHHHHHHcCCChHHhhccC
Confidence 5679999999 999999999999999999999999 678542 347999999987532 23467899999865321
Q ss_pred CCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEeCC
Q 008534 243 HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEP 322 (562)
Q Consensus 243 ~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEP 322 (562)
+ +.+ ..... . ....++++.++|.+..+. .++.|||| +|++++||||
T Consensus 102 ~------l~~---~~~~~--~-----~~~~~~l~~~~l~~~~~~-----~~~~LS~g-------------~~~~lilDe~ 147 (525)
T 1tf7_A 102 K------LFI---LDASP--D-----PEGQEVVGGFDLSALIER-----INYAIQKY-------------RARRVSIDSV 147 (525)
T ss_dssp S------EEE---EECCC--C-----SSCCSCCSSHHHHHHHHH-----HHHHHHHH-------------TCSEEEEECS
T ss_pred c------EEE---EecCc--c-----cchhhhhcccCHHHHHHH-----HHHHHHHc-------------CCCEEEECCH
Confidence 1 110 00000 0 000011122222222221 12345655 4789999999
Q ss_pred CC-----CCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChH--------HHhcCCEEEEEcC
Q 008534 323 TS-----GLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSR--------LFHKFDKLILLGK 371 (562)
Q Consensus 323 Ts-----gLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~--------i~~~~D~i~vL~~ 371 (562)
|+ +||+..+..+.+.++.+++.|+|||+++|++... +..+||+|++|++
T Consensus 148 t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~ 209 (525)
T 1tf7_A 148 TSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRN 209 (525)
T ss_dssp TTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEE
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEEEEEEE
Confidence 98 4699999999999999987899999999998752 2345999999998
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=99.79 E-value=2.2e-19 Score=207.22 Aligned_cols=135 Identities=24% Similarity=0.412 Sum_probs=109.7
Q ss_pred CCCCHHHHHHHHHhhCCCCC---ccH---HHHHHHHHHHHHHcCCCcc-ccccccCcccCCCChhHHHHHHHHHHHhhCC
Q 008534 242 PHLTVKETLTYAALLRLPNT---LTK---QQKEKRAIDVINELGLERC-QDTMIGGSFVRGVSGGERKRVCIGNEIIINP 314 (562)
Q Consensus 242 ~~lTV~enl~~~~~~~~~~~---~~~---~~~~~~v~~~l~~lgL~~~-~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P 314 (562)
..+||.|++.|...+.++.. +.. ++..+++ +.+..+||... .++ .+.+|||||||||.||++|..+|
T Consensus 450 ~~ltV~e~~~f~e~l~l~~~~~~i~~~~~~ei~~Rl-~~L~~vGL~~l~ldR-----~~~tLSGGEkQRV~LA~aL~~~~ 523 (972)
T 2r6f_A 450 TAMSVTEALAFFDGLELTEKEAQIARLILREIRDRL-GFLQNVGLDYLTLSR-----SAGTLSGGEAQRIRLATQIGSRL 523 (972)
T ss_dssp HTSBHHHHHHHHHHCCCCHHHHHHSHHHHHHHHHHH-HHHHHHTCTTSBSSS-----BGGGCCHHHHHHHHHHHHHTTCC
T ss_pred hhCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH-HHhhhCCCCccccCC-----ccccCCHHHHHHHHHHHHHhhCC
Confidence 46899999999766543321 000 2334444 46888999753 344 45689999999999999999985
Q ss_pred --CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEE------cCCeEEEecChHHHH
Q 008534 315 --SLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL------GKGSLLYFGKASEAM 384 (562)
Q Consensus 315 --~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL------~~G~iv~~G~~~el~ 384 (562)
+||||||||+|||+.....+++.|++|.+.|.|||+|+|++. . ...||+|++| ++|++++.|+++++.
T Consensus 524 ~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~-~-i~~ADrIi~LgpgaG~~gG~iv~~G~~~e~~ 599 (972)
T 2r6f_A 524 TGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDED-T-MLAADYLIDIGPGAGIHGGEVVAAGTPEEVM 599 (972)
T ss_dssp CSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHH-H-HHSCSEEEEECSSSGGGCCSEEEEECTTTTT
T ss_pred CCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-H-HHhCCEEEEeCCCccCCCCEEEEecCHHHHH
Confidence 999999999999999999999999999888999999999974 3 4679999999 799999999998764
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=1.1e-19 Score=200.18 Aligned_cols=156 Identities=13% Similarity=0.116 Sum_probs=117.8
Q ss_pred EEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHHHHHHHHhh
Q 008534 177 TGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALL 256 (562)
Q Consensus 177 s~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~ 256 (562)
++.|++|++++|+||||||||||+++++|... + .|. +.+.|++|++. ..+.++.. .
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~--~-~G~-------------~vi~~~~ee~~----~~l~~~~~---~- 330 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENAC--A-NKE-------------RAILFAYEESR----AQLLRNAY---S- 330 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHH--T-TTC-------------CEEEEESSSCH----HHHHHHHH---T-
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH--h-CCC-------------CEEEEEEeCCH----HHHHHHHH---H-
Confidence 45899999999999999999999999998542 2 242 12556777642 13333321 1
Q ss_pred CCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH-----HH
Q 008534 257 RLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDST-----TA 331 (562)
Q Consensus 257 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~-----~~ 331 (562)
. ... +.+ +...|+....+ ..+..|||||+||+.+|+++..+|++||+| ||++||.. .+
T Consensus 331 -~--g~~-------~~~-~~~~g~~~~~~-----~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~ 393 (525)
T 1tf7_A 331 -W--GMD-------FEE-MERQNLLKIVC-----AYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFR 393 (525)
T ss_dssp -T--SCC-------HHH-HHHTTSEEECC-----CCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHH
T ss_pred -c--CCC-------HHH-HHhCCCEEEEE-----eccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHH
Confidence 1 111 111 22345544333 235689999999999999999999999999 99999999 99
Q ss_pred HHHHHHHHHHHHCCcEEEEEecCCC---------hHHHhcCCEEEEEcCCe
Q 008534 332 LRIVQMLQDIAEAGKTVVTTIHQPS---------SRLFHKFDKLILLGKGS 373 (562)
Q Consensus 332 ~~i~~~L~~l~~~g~Tvii~tH~~~---------~~i~~~~D~i~vL~~G~ 373 (562)
..+.+.++.+++.|.|||+++|+.. ..+..+||+|++|++|+
T Consensus 394 ~~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 394 QFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred HHHHHHHHHHHhCCCEEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence 9999999999888999999999971 34567899999999887
|
| >3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=1.2e-19 Score=210.87 Aligned_cols=160 Identities=15% Similarity=0.126 Sum_probs=112.4
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHH
Q 008534 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKE 248 (562)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~~~igyV~Q~~~l~~~lTV~e 248 (562)
.+.|++|++|++++|++++|+||||||||||||+|++...- ...| +|||++...++.
T Consensus 648 ~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~-aq~G-----------------~~vpa~~~~~~~----- 704 (934)
T 3thx_A 648 IAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLM-AQIG-----------------CFVPCESAEVSI----- 704 (934)
T ss_dssp CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHH-HHHT-----------------CCBSEEEEEEEC-----
T ss_pred ceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHH-HhcC-----------------CccccccccchH-----
Confidence 45799999999999999999999999999999999431100 0011 111111100000
Q ss_pred HHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHH--hhCCCEEEEeCCCCCC
Q 008534 249 TLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEI--IINPSLLFLDEPTSGL 326 (562)
Q Consensus 249 nl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraL--l~~P~iLlLDEPTsgL 326 (562)
+..++..+|+.+. ...++|+|+++++.+|++| +.+|+++||||||+||
T Consensus 705 ----------------------~d~i~~~ig~~d~--------l~~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~Gl 754 (934)
T 3thx_A 705 ----------------------VDCILARVGAGDS--------QLKGVSTFMAEMLETASILRSATKDSLIIIDELGRGT 754 (934)
T ss_dssp ----------------------CSEEEEECC-----------------CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSS
T ss_pred ----------------------HHHHHHhcCchhh--------HHHhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCC
Confidence 0001111222211 1246888888888888888 8999999999999999
Q ss_pred CHHHHHHH-HHHHHHHHH-CCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHH
Q 008534 327 DSTTALRI-VQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (562)
Q Consensus 327 D~~~~~~i-~~~L~~l~~-~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el 383 (562)
|+.....+ ...++.+.+ .|.|+|++||+.. +..+||++..+.+|++.+.++.+++
T Consensus 755 D~~~~~~i~~~il~~l~~~~g~~vl~aTH~~e--l~~lad~~~~v~ng~v~~~~~~~~l 811 (934)
T 3thx_A 755 STYDGFGLAWAISEYIATKIGAFCMFATHFHE--LTALANQIPTVNNLHVTALTTEETL 811 (934)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCEEEEEESCGG--GGGGGGTCTTEEEEEEEEEEETTEE
T ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHH--HHHHhcccceeEeeEEEEEecCCcE
Confidence 99998888 667777776 4899999999953 5689999999999999998877664
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.78 E-value=3.4e-20 Score=186.95 Aligned_cols=132 Identities=20% Similarity=0.315 Sum_probs=98.5
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCC-ccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHHH
Q 008534 171 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTV-GGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKET 249 (562)
Q Consensus 171 ~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~-~G~I~i~G~~~~~~~~~~igyV~Q~~~l~~~lTV~en 249 (562)
++|+++| +++|++++|+||||||||||+++|+|.+. +. +|+|.++|.++....+..+++++|.
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~--~~~~G~I~~~g~~i~~~~~~~~~~v~q~------------ 78 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYIN--QTKSYHIITIEDPIEYVFKHKKSIVNQR------------ 78 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHH--HHCCCEEEEEESSCCSCCCCSSSEEEEE------------
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCC--CCCCCEEEEcCCcceeecCCcceeeeHH------------
Confidence 5899999 99999999999999999999999998542 33 7999999877531111112222220
Q ss_pred HHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 008534 250 LTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDST 329 (562)
Q Consensus 250 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~ 329 (562)
.+|+.. ..+ |++||++|..+|++|++|||| |+.
T Consensus 79 ---------------------------~~gl~~-----------~~l------~~~la~aL~~~p~illlDEp~---D~~ 111 (261)
T 2eyu_A 79 ---------------------------EVGEDT-----------KSF------ADALRAALREDPDVIFVGEMR---DLE 111 (261)
T ss_dssp ---------------------------EBTTTB-----------SCH------HHHHHHHHHHCCSEEEESCCC---SHH
T ss_pred ---------------------------HhCCCH-----------HHH------HHHHHHHHhhCCCEEEeCCCC---CHH
Confidence 123321 122 899999999999999999999 998
Q ss_pred HHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcC
Q 008534 330 TALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK 371 (562)
Q Consensus 330 ~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~ 371 (562)
+...+++ . +..|.+|++++|+.+ +...||++++|..
T Consensus 112 ~~~~~l~---~-~~~g~~vl~t~H~~~--~~~~~dri~~l~~ 147 (261)
T 2eyu_A 112 TVETALR---A-AETGHLVFGTLHTNT--AIDTIHRIVDIFP 147 (261)
T ss_dssp HHHHHHH---H-HHTTCEEEEEECCSS--HHHHHHHHHHTSC
T ss_pred HHHHHHH---H-HccCCEEEEEeCcch--HHHHHHHHhhhcC
Confidence 8665443 3 346999999999965 4678999988864
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=3.2e-20 Score=180.37 Aligned_cols=159 Identities=23% Similarity=0.255 Sum_probs=101.6
Q ss_pred eeeceE-EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC-----CccEEEECCEeCChhccCcEEEEccCCCCCCCCC
Q 008534 172 ILNGIT-GSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPT-----VGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLT 245 (562)
Q Consensus 172 iL~~vs-~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~-----~~G~I~i~G~~~~~~~~~~igyV~Q~~~l~~~lT 245 (562)
.|+.+- .-|++|++++|+||||||||||+++|+|....++ .+|.|++++.+... .+++++++|+..+++. |
T Consensus 13 ~LD~~l~ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~--~~~i~~~~~~~~~~~~-~ 89 (231)
T 4a74_A 13 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFR--PERIREIAQNRGLDPD-E 89 (231)
T ss_dssp HHHHHTTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCC--HHHHHHHHHHTTSCHH-H
T ss_pred hHHhHhcCCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCC--HHHHHHHHHHcCCCHH-H
Confidence 444332 4799999999999999999999999998543322 23467776654211 1234555555544443 4
Q ss_pred HHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhH-HHHHHHHHHHhh-------CCCEE
Q 008534 246 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGE-RKRVCIGNEIII-------NPSLL 317 (562)
Q Consensus 246 V~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGq-rqRv~IAraLl~-------~P~iL 317 (562)
+.||+.+. ...++++ ++.+..+++++. +|+++
T Consensus 90 ~~~~~~~~----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 129 (231)
T 4a74_A 90 VLKHIYVA----------------------------------------RAFNSNHQMLLVQQAEDKIKELLNTDRPVKLL 129 (231)
T ss_dssp HHHTEEEE----------------------------------------ECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEE
T ss_pred HhhcEEEE----------------------------------------ecCChHHHHHHHHHHHHHHHHhcccCCceeEE
Confidence 44444321 1122222 233455555554 89999
Q ss_pred EEeCCCCCCCHH-------H-----HHHHHHHHHHHHH-CCcEEEEEecCCCh---HHHhcCCEEEEEcCCe
Q 008534 318 FLDEPTSGLDST-------T-----ALRIVQMLQDIAE-AGKTVVTTIHQPSS---RLFHKFDKLILLGKGS 373 (562)
Q Consensus 318 lLDEPTsgLD~~-------~-----~~~i~~~L~~l~~-~g~Tvii~tH~~~~---~i~~~~D~i~vL~~G~ 373 (562)
++||||++||+. . ..++++.|+++++ .|.|||+++|.... .+...||++++|++|+
T Consensus 130 ilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~~ 201 (231)
T 4a74_A 130 IVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKGK 201 (231)
T ss_dssp EEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEECT
T ss_pred EECChHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEecC
Confidence 999999999984 2 2378888888765 49999999995331 3667899999998753
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* | Back alignment and structure |
|---|
Probab=99.77 E-value=7.1e-19 Score=162.63 Aligned_cols=83 Identities=27% Similarity=0.320 Sum_probs=73.9
Q ss_pred CcccCCCChhHHHHHHHH------HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcC
Q 008534 290 GSFVRGVSGGERKRVCIG------NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKF 363 (562)
Q Consensus 290 ~~~~~~LSGGqrqRv~IA------raLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~ 363 (562)
+..+..||||||||++|| |+|+.+|++|||||||+|||+.++..+.+.|+++.+.|+|||++||++ . +...|
T Consensus 52 ~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~-~-~~~~~ 129 (148)
T 1f2t_B 52 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE-E-LKDAA 129 (148)
T ss_dssp EECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCG-G-GGGGC
T ss_pred cCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChH-H-HHHhC
Confidence 445788999999999876 899999999999999999999999999999999877789999999997 3 56899
Q ss_pred CEEEEE--cCCeE
Q 008534 364 DKLILL--GKGSL 374 (562)
Q Consensus 364 D~i~vL--~~G~i 374 (562)
|++++| ++|..
T Consensus 130 d~ii~l~~~~g~s 142 (148)
T 1f2t_B 130 DHVIRISLENGSS 142 (148)
T ss_dssp SEEEEEEEETTEE
T ss_pred CEEEEEEcCCCeE
Confidence 999999 45643
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=2.4e-21 Score=187.11 Aligned_cols=146 Identities=19% Similarity=0.202 Sum_probs=112.7
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEccCCCCC--CCCCHHHHHHHHHhhC
Q 008534 180 VNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLF--PHLTVKETLTYAALLR 257 (562)
Q Consensus 180 i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~~~igyV~Q~~~l~--~~lTV~enl~~~~~~~ 257 (562)
.++|++++|+||||||||||+++|+|.+. + .++||+|++.++ +.+|+.+++.+...
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~-~-------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~~-- 60 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLG-E-------------------RVALLPMDHYYKDLGHLPLEERLRVNYD-- 60 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHG-G-------------------GEEEEEGGGCBCCCTTSCHHHHHHSCTT--
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhC-C-------------------CeEEEecCccccCcccccHHHhcCCCCC--
Confidence 57899999999999999999999998532 1 589999999877 56799998765321
Q ss_pred CCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHH----HHHHHHHHHhhCCCEEEEeCCCCC-------C
Q 008534 258 LPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGER----KRVCIGNEIIINPSLLFLDEPTSG-------L 326 (562)
Q Consensus 258 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqr----qRv~IAraLl~~P~iLlLDEPTsg-------L 326 (562)
.+... ..+++.+.++.+++.+..+.. +..+|+||+ ||+++|++++.+|+++++||||++ |
T Consensus 61 ~~~~~----~~~~~~~~l~~~~~~~~~~~~-----~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~l 131 (211)
T 3asz_A 61 HPDAF----DLALYLEHAQALLRGLPVEMP-----VYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFV 131 (211)
T ss_dssp SGGGB----CHHHHHHHHHHHHTTCCEEEC-----CEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEE
T ss_pred Chhhh----hHHHHHHHHHHHHcCCCcCCC-----cccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEE
Confidence 11111 223456677777776554432 357999964 788999999999999999999999 9
Q ss_pred CHHHHHHHHHHHHHH-HHCCcEEEEEecCCC
Q 008534 327 DSTTALRIVQMLQDI-AEAGKTVVTTIHQPS 356 (562)
Q Consensus 327 D~~~~~~i~~~L~~l-~~~g~Tvii~tH~~~ 356 (562)
|+.....+.+.+++. .+.|+|++.++|+..
T Consensus 132 d~~~~~~~~r~l~r~~~~~g~t~~~~~~~~~ 162 (211)
T 3asz_A 132 DADADERFIRRLKRDVLERGRSLEGVVAQYL 162 (211)
T ss_dssp ECCHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred eCCHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 999999999998875 456899999999743
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=4.6e-20 Score=189.54 Aligned_cols=165 Identities=15% Similarity=0.163 Sum_probs=86.4
Q ss_pred EeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhc-cCcE
Q 008534 153 TDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL-KSKI 231 (562)
Q Consensus 153 ~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~-~~~i 231 (562)
.||++.| +.+.++++++|+| +|+||||||||||+++|.|... .+.+| |.++|.++.... .+.+
T Consensus 2 ~~l~~~~--------~~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~-~~~~g-i~~~g~~~~~t~~~~~~ 65 (301)
T 2qnr_A 2 SNLPNQV--------HRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDL-YPERV-ISGAAEKIERTVQIEAS 65 (301)
T ss_dssp ------------------------CEEE------EEEEETTSSHHHHHHHHHC--------------------------C
T ss_pred CCCcceE--------CCEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCc-cCCCC-cccCCcccCCcceEeeE
Confidence 3667776 3567999999998 9999999999999999998512 24478 888887764321 3568
Q ss_pred EEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHh
Q 008534 232 GFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEII 311 (562)
Q Consensus 232 gyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl 311 (562)
++++|++.++..+||.|++.++..... .+.....+..+. +..+. +.+++|||||||+.+||+++
T Consensus 66 ~~~~q~~~~~~~ltv~Dt~g~~~~~~~-----~e~~~~l~~~l~------~~~~~-----~~~~~sgg~rqrv~~ara~~ 129 (301)
T 2qnr_A 66 TVEIEERGVKLRLTVVDTPGYGDAINC-----RDCFKTIISYID------EQFER-----YLHDESGLNRRHIIDNRVHC 129 (301)
T ss_dssp EEEEC---CCEEEEEEEEC----------------CTTHHHHHH------HHHHH-----HHHHHTSSCCTTCCCCCCCE
T ss_pred EEEecCCCcccCcchhhhhhhhhhcCc-----HHHHHHHHHHHH------HHHHH-----HHHHhCHHhhhhhhhhhhhh
Confidence 999999888778999999887643210 000011111111 11122 34689999999999999885
Q ss_pred hCCCEEEEeCCCCC-CCHHHHHHHHHHHHHHHHC-CcEEEEEecCCCh
Q 008534 312 INPSLLFLDEPTSG-LDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSS 357 (562)
Q Consensus 312 ~~P~iLlLDEPTsg-LD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~ 357 (562)
+|++||||++ ||+... +.++++.+. +.++|++.||+..
T Consensus 130 ----ll~ldePt~~~Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~~ 169 (301)
T 2qnr_A 130 ----CFYFISPFGHGLKPLDV----AFMKAIHNKVNIVPVIAKADTLT 169 (301)
T ss_dssp ----EEEEECSSSSSCCHHHH----HHHHHHTTTSCEEEEECCGGGSC
T ss_pred ----eeeeecCcccCCCHHHH----HHHHHHHhcCCEEEEEEeCCCCC
Confidence 9999999985 999873 555665543 7888999999753
|
| >3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* | Back alignment and structure |
|---|
Probab=99.73 E-value=1e-18 Score=202.77 Aligned_cols=155 Identities=17% Similarity=0.206 Sum_probs=104.7
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHH
Q 008534 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKE 248 (562)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~~~igyV~Q~~~l~~~lTV~e 248 (562)
++.|++||+|++++|++++|+||||||||||||+|++.... ...|. .+... ...++++ +.+|..+.+.+
T Consensus 659 ~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~-aq~g~------~vpa~-~~~i~~~---d~i~~~ig~~d 727 (918)
T 3thx_B 659 DQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIM-AQIGS------YVPAE-EATIGIV---DGIFTRMGAAD 727 (918)
T ss_dssp SSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHH-HHHTC------CBSSS-EEEEECC---SEEEEEC----
T ss_pred CceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHH-hhcCc------cccch-hhhhhHH---HHHHHhCChHH
Confidence 56899999999999999999999999999999999863210 11110 01000 0112211 12222222222
Q ss_pred HHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 008534 249 TLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDS 328 (562)
Q Consensus 249 nl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~ 328 (562)
++ .. ....+|+||+|++.|+++ +.+|+++||||||+|||+
T Consensus 728 ~l----------------------------------~~-----~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~ 767 (918)
T 3thx_B 728 NI----------------------------------YK-----GRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTST 767 (918)
T ss_dssp ---------------------------------------------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCH
T ss_pred HH----------------------------------HH-----hHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCH
Confidence 11 11 124689999999999999 899999999999999999
Q ss_pred HHHHHHH-HHHHHHHH-CCcEEEEEecCCChHHHhcCCEEEE-EcCCeEEE
Q 008534 329 TTALRIV-QMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLIL-LGKGSLLY 376 (562)
Q Consensus 329 ~~~~~i~-~~L~~l~~-~g~Tvii~tH~~~~~i~~~~D~i~v-L~~G~iv~ 376 (562)
.....+. ..++.+.+ .|.|+|++||++. +.+++|+.-- +.++++.+
T Consensus 768 ~~~~~i~~~il~~L~~~~g~tvl~vTH~~e--l~~l~~~~~~~v~n~~~~~ 816 (918)
T 3thx_B 768 HDGIAIAYATLEYFIRDVKSLTLFVTHYPP--VCELEKNYSHQVGNYHMGF 816 (918)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEECSCGG--GGGHHHHTTTTEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEeCcHH--HHHHHhhcccceEEEEEEE
Confidence 9999987 77777765 5999999999964 4566765431 34455544
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=99.73 E-value=2.2e-20 Score=209.28 Aligned_cols=192 Identities=14% Similarity=0.180 Sum_probs=119.2
Q ss_pred eEEEEeEEEEEeecccCCccccceeece----------EEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEE
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGI----------TGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITY 218 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~v----------s~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i 218 (562)
.++++||++.|.. ..+++|+.+ +++++. +||+|||||||||||++|+|.. .|..+|.|++
T Consensus 10 ~i~~~~l~~~~~~------~~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~-~P~~sG~vt~ 79 (608)
T 3szr_A 10 SVAENNLCSQYEE------KVRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVA-LPRGSGIVTR 79 (608)
T ss_dssp ----------CHH------HHHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC--------CCC
T ss_pred hhhhhhhhHHHHH------HHHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCC-CCCCCCeEEE
Confidence 5789999998731 123444444 355554 9999999999999999999964 3435899999
Q ss_pred CCEeCC-------hhccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCc
Q 008534 219 NDHPYS-------KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGS 291 (562)
Q Consensus 219 ~G~~~~-------~~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~ 291 (562)
+|.++. ..+++.|+|++|++.+++.+||+||+.++...... ...++.
T Consensus 80 ~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~~~----------------~~~~~s---------- 133 (608)
T 3szr_A 80 CPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNAIAG----------------EGMGIS---------- 133 (608)
T ss_dssp SCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHHHHC----------------SSSCCC----------
T ss_pred cCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHHhcC----------------Cccccc----------
Confidence 998852 24677899999999999999999999875321100 000111
Q ss_pred ccCCCChhHHHHHHHHHHHhhCCCEEEEeCC------CCCCCHHHHHHHHHHHHHHHHC--CcEEEEEecCCCh------
Q 008534 292 FVRGVSGGERKRVCIGNEIIINPSLLFLDEP------TSGLDSTTALRIVQMLQDIAEA--GKTVVTTIHQPSS------ 357 (562)
Q Consensus 292 ~~~~LSGGqrqRv~IAraLl~~P~iLlLDEP------TsgLD~~~~~~i~~~L~~l~~~--g~Tvii~tH~~~~------ 357 (562)
++++.++.+....|+++|+||| |+|||+..+..+.+.++++.++ +.++++++|+.+.
T Consensus 134 ---------~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l 204 (608)
T 3szr_A 134 ---------HELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEAL 204 (608)
T ss_dssp ---------SCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHH
T ss_pred ---------hHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHH
Confidence 1112222223348999999999 9999999999999999997543 6788889998752
Q ss_pred HHHhc-----CCEEEEEcCCeEEEecChHHHHH
Q 008534 358 RLFHK-----FDKLILLGKGSLLYFGKASEAMA 385 (562)
Q Consensus 358 ~i~~~-----~D~i~vL~~G~iv~~G~~~el~~ 385 (562)
.+.+. ...|+|+.++.++..|+.+++.+
T Consensus 205 ~la~~v~~~g~rtI~VlTK~Dlv~~g~~~~~~~ 237 (608)
T 3szr_A 205 SMAQEVDPEGDRTIGILTKPDLVDKGTEDKVVD 237 (608)
T ss_dssp HHHHHHCSSCCSEEEEEECGGGSSSSSTTCCCC
T ss_pred HHHHHHhhcCCceEEEecchhhcCcccHHHHHH
Confidence 12221 24688999988888887655443
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=99.73 E-value=3.1e-19 Score=183.75 Aligned_cols=148 Identities=16% Similarity=0.160 Sum_probs=105.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh--------hc--cCcEEEEccCCCCCCCCCHHHHHH
Q 008534 182 PGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--------SL--KSKIGFVTQDDVLFPHLTVKETLT 251 (562)
Q Consensus 182 ~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--------~~--~~~igyV~Q~~~l~~~lTV~enl~ 251 (562)
+|++++|+||||||||||+++|+|.+. +.+|+|.++|.++.+ .+ +..++||+|++.++|.++|++|+.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~--~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~ 178 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQ--NLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQ 178 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHH--TTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH--hcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHH
Confidence 689999999999999999999999653 458999999998642 11 346999999999999899999998
Q ss_pred HHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 008534 252 YAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTA 331 (562)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~ 331 (562)
++...... ..+++..|+.+..+ +-++..++||++|||||+.+|+.++| .||+.+.
T Consensus 179 ~~~~~~~d------------~~llDt~G~~~~~~--------~~~~eLs~~r~~iaRal~~~P~~~lL-----vLDa~t~ 233 (304)
T 1rj9_A 179 AMKARGYD------------LLFVDTAGRLHTKH--------NLMEELKKVKRAIAKADPEEPKEVWL-----VLDAVTG 233 (304)
T ss_dssp HHHHHTCS------------EEEECCCCCCTTCH--------HHHHHHHHHHHHHHHHCTTCCSEEEE-----EEETTBC
T ss_pred HHHhCCCC------------EEEecCCCCCCchH--------HHHHHHHHHHHHHHHhhcCCCCeEEE-----EEcHHHH
Confidence 75321100 00122233322211 12455669999999999999994444 4454444
Q ss_pred HHHHHHHHHHHHC-CcEEEEEecCCC
Q 008534 332 LRIVQMLQDIAEA-GKTVVTTIHQPS 356 (562)
Q Consensus 332 ~~i~~~L~~l~~~-g~Tvii~tH~~~ 356 (562)
.++++.++++.+. |.|+|++||+..
T Consensus 234 ~~~~~~~~~~~~~~~~t~iivTh~d~ 259 (304)
T 1rj9_A 234 QNGLEQAKKFHEAVGLTGVIVTKLDG 259 (304)
T ss_dssp THHHHHHHHHHHHHCCSEEEEECTTS
T ss_pred HHHHHHHHHHHHHcCCcEEEEECCcc
Confidence 5566667776544 899999999843
|
| >1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=8.1e-19 Score=200.53 Aligned_cols=146 Identities=18% Similarity=0.177 Sum_probs=106.7
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHH
Q 008534 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKE 248 (562)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~~~igyV~Q~~~l~~~lTV~e 248 (562)
++.+++|+||+ |++++|+||||||||||||+|+|.... +..|.+. . ..+..+++++| +|+.+++.|
T Consensus 565 ~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~-~~~G~~v------p-a~~~~i~~v~~---i~~~~~~~d 630 (765)
T 1ewq_A 565 TEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALL-AQVGSFV------P-AEEAHLPLFDG---IYTRIGASD 630 (765)
T ss_dssp SCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHH-HTTTCCB------S-SSEEEECCCSE---EEEECCC--
T ss_pred CceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhh-cccCcee------e-hhccceeeHHH---hhccCCHHH
Confidence 46899999999 999999999999999999999985421 2345432 1 12345788877 556666666
Q ss_pred HHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHH--hhCCCEEEEeCC---C
Q 008534 249 TLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEI--IINPSLLFLDEP---T 323 (562)
Q Consensus 249 nl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraL--l~~P~iLlLDEP---T 323 (562)
|+. .++|+|+++++.++++| +.+|+++||||| |
T Consensus 631 ~l~------------------------------------------~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGT 668 (765)
T 1ewq_A 631 DLA------------------------------------------GGKSTFMVEMEEVALILKEATENSLVLLDEVGRGT 668 (765)
T ss_dssp ----------------------------------------------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTS
T ss_pred HHH------------------------------------------hcccHHHHHHHHHHHHHHhccCCCEEEEECCCCCC
Confidence 542 14789999999999999 999999999999 9
Q ss_pred CCCCHHHH-HHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEe
Q 008534 324 SGLDSTTA-LRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (562)
Q Consensus 324 sgLD~~~~-~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~ 377 (562)
++||+.+. ..+++.|.+ .|.|+|++||+.. +..++ .-.+.++++...
T Consensus 669 s~lD~~~~~~~i~~~L~~---~g~~vl~~TH~~~--l~~~~--~~~v~n~~~~~~ 716 (765)
T 1ewq_A 669 SSLDGVAIATAVAEALHE---RRAYTLFATHYFE--LTALG--LPRLKNLHVAAR 716 (765)
T ss_dssp CHHHHHHHHHHHHHHHHH---HTCEEEEECCCHH--HHTCC--CTTEEEEEEEEE
T ss_pred CCcCHHHHHHHHHHHHHh---CCCEEEEEeCCHH--HHHhh--hhcceEEEEEEE
Confidence 99999875 578888765 4899999999953 34554 222344555443
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=99.72 E-value=1.7e-19 Score=189.19 Aligned_cols=167 Identities=22% Similarity=0.180 Sum_probs=107.7
Q ss_pred ceeece-EEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCc----cE-EEECCEeCChhccCcEEEEccCCCCCCCC
Q 008534 171 DILNGI-TGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVG----GS-ITYNDHPYSKSLKSKIGFVTQDDVLFPHL 244 (562)
Q Consensus 171 ~iL~~v-s~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~----G~-I~i~G~~~~~~~~~~igyV~Q~~~l~~~l 244 (562)
+.|+.+ .+.|++|++++|+||||||||||++.|++....++.. |. |++++.+.. .++++++++|...+++.
T Consensus 118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~--~~~~i~~i~q~~~~~~~- 194 (349)
T 1pzn_A 118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF--RPERIREIAQNRGLDPD- 194 (349)
T ss_dssp HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC--CHHHHHHHHHTTTCCHH-
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC--CHHHHHHHHHHcCCCHH-
Confidence 456666 6899999999999999999999999999864323333 67 888887641 23457778887766543
Q ss_pred CHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHh-------hCCCEE
Q 008534 245 TVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEII-------INPSLL 317 (562)
Q Consensus 245 TV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl-------~~P~iL 317 (562)
++.+|+.+... . -|.+++|++.++++++ .+|++|
T Consensus 195 ~v~~ni~~~~~------~---------------------------------~~~~~~~~l~~~~~~~~~lS~G~~~~~ll 235 (349)
T 1pzn_A 195 EVLKHIYVARA------F---------------------------------NSNHQMLLVQQAEDKIKELLNTDRPVKLL 235 (349)
T ss_dssp HHGGGEEEEEC------C---------------------------------SHHHHHHHHHHHHHHHHHSSSSSSCEEEE
T ss_pred HHhhCEEEEec------C---------------------------------ChHHHHHHHHHHHHHHHHhccccCCCCEE
Confidence 55555543210 0 1344555555555555 689999
Q ss_pred EEeCCCCCCCHHH------------HHHHHHHHHHHHH-CCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecCh
Q 008534 318 FLDEPTSGLDSTT------------ALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 380 (562)
Q Consensus 318 lLDEPTsgLD~~~------------~~~i~~~L~~l~~-~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~ 380 (562)
|+||||++||+.. ..+++..|+++++ .|.|||+++|.... ....++.......|+++.++..
T Consensus 236 IlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~~-~~~~~~~~~~~~~G~~l~~~~~ 310 (349)
T 1pzn_A 236 IVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQAR-PDAFFGDPTRPIGGHILAHSAT 310 (349)
T ss_dssp EEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC----------------CCCCCTTCS
T ss_pred EEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEcccccc-cccccCCccccCCcceEeecCc
Confidence 9999999999862 3566777777765 48999999998542 3334455666667776665543
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.71 E-value=7.6e-20 Score=175.81 Aligned_cols=156 Identities=16% Similarity=0.173 Sum_probs=105.9
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh--hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCC
Q 008534 183 GEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPN 260 (562)
Q Consensus 183 Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~ 260 (562)
|++++|+||||||||||+++|+|.+. .+| |.++|.+... .+++++||++|+. ... ++++. ...
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~---~~G-i~~~g~~~~~~~~~~~~ig~~~~~~--~g~---~~~l~---~~~--- 65 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK---SSG-VPVDGFYTEEVRQGGRRIGFDVVTL--SGT---RGPLS---RVG--- 65 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH---HTT-CCCEEEECCEEETTSSEEEEEEEET--TSC---EEEEE---ECC---
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc---cCC-EEEcCEecchhHhhhceEEEEEEec--ccc---eehhh---ccc---
Confidence 78999999999999999999999542 468 9999987642 3577899999975 111 11111 000
Q ss_pred CccHHHHHHHHHHHHHHcCCCc-cccccccCcccCCCChhHHHHH-HHHH---HHhhCCCEEEEeC--CCCCCCHHHHHH
Q 008534 261 TLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVRGVSGGERKRV-CIGN---EIIINPSLLFLDE--PTSGLDSTTALR 333 (562)
Q Consensus 261 ~~~~~~~~~~v~~~l~~lgL~~-~~~t~vg~~~~~~LSGGqrqRv-~IAr---aLl~~P~iLlLDE--PTsgLD~~~~~~ 333 (562)
++.++ ..+..++ .+...+|+|||+++ ++++ |++.+|+|||||| |+..+|....
T Consensus 66 -----------------~~~~~~~~~~~v~-~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~-- 125 (189)
T 2i3b_A 66 -----------------LEPPPGKRECRVG-QYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFI-- 125 (189)
T ss_dssp -----------------CCCCSSSCCEESS-SSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHH--
T ss_pred -----------------ccCCccccccccc-eEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHH--
Confidence 01111 0111333 23456999999998 4455 6899999999999 8999998654
Q ss_pred HHHHHHHHHHCCcEEEE----EecCCChHHHhcCCEEEEEcCCeEEEec
Q 008534 334 IVQMLQDIAEAGKTVVT----TIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (562)
Q Consensus 334 i~~~L~~l~~~g~Tvii----~tH~~~~~i~~~~D~i~vL~~G~iv~~G 378 (562)
+.|.++.+...++|+ ++|+.+ ..+.|+|..+.+|+|+...
T Consensus 126 --~~l~~~l~~~~~~ilgti~vsh~~~---~~~vd~i~~~~~~~i~~~~ 169 (189)
T 2i3b_A 126 --QAVRQTLSTPGTIILGTIPVPKGKP---LALVEEIRNRKDVKVFNVT 169 (189)
T ss_dssp --HHHHHHHHCSSCCEEEECCCCCSSC---CTTHHHHHTTCCSEEEECC
T ss_pred --HHHHHHHhCCCcEEEEEeecCCCCc---hHHHHHHeecCCcEEEEeC
Confidence 444554444555554 238854 2467888888899988754
|
| >1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=1.8e-18 Score=198.64 Aligned_cols=157 Identities=17% Similarity=0.131 Sum_probs=110.4
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHH
Q 008534 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKE 248 (562)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~~~igyV~Q~~~l~~~lTV~e 248 (562)
++.+++|++|+ ++|++++|+||||||||||||+|+|.... ...| ..+.. .+..+++++| +|+.+++.|
T Consensus 594 ~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~-~q~G------~~vpa-~~~~i~~~~~---i~~~~~~~d 661 (800)
T 1wb9_A 594 EPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALM-AYIG------SYVPA-QKVEIGPIDR---IFTRVGAAD 661 (800)
T ss_dssp SCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHH-HTTT------CCBSS-SEEEECCCCE---EEEEEC---
T ss_pred Cceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHH-HhcC------cccch-hcccceeHHH---HHhhCCHHH
Confidence 46799999999 99999999999999999999999985321 1122 12211 1234666665 555666666
Q ss_pred HHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 008534 249 TLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDS 328 (562)
Q Consensus 249 nl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~ 328 (562)
|+..+ + ..+|+++++ ++.+..++.+|+++|||||++|+|+
T Consensus 662 ~l~~~--------------------------~-------------stf~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~ 701 (800)
T 1wb9_A 662 DLASG--------------------------R-------------STFMVEMTE-TANILHNATEYSLVLMDEIGRGTST 701 (800)
T ss_dssp -----------------------------------------------CHHHHHH-HHHHHHHCCTTEEEEEESCCCCSSS
T ss_pred HHHhh--------------------------h-------------hhhhHHHHH-HHHHHHhccCCCEEEEECCCCCCCh
Confidence 65321 1 235666654 4555566899999999999999999
Q ss_pred HHHHHH-HHHHHHHHH-CCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecC
Q 008534 329 TTALRI-VQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (562)
Q Consensus 329 ~~~~~i-~~~L~~l~~-~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (562)
.....+ ...++.+.+ .|.++|++||++. +..+||++..+.+|++.+...
T Consensus 702 ~d~~~i~~~ll~~l~~~~g~~vl~~TH~~e--l~~l~d~~~~v~n~~~~~~~~ 752 (800)
T 1wb9_A 702 YDGLSLAWACAENLANKIKALTLFATHYFE--LTQLPEKMEGVANVHLDALEH 752 (800)
T ss_dssp SHHHHHHHHHHHHHHHTTCCEEEEECSCGG--GGGHHHHSTTEEEEEEEEEEE
T ss_pred hHHHHHHHHHHHHHHhccCCeEEEEeCCHH--HHHHhhhhhceEEEEEEEEEc
Confidence 877775 778888877 4899999999964 456899888888888876543
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=3.4e-18 Score=179.60 Aligned_cols=128 Identities=26% Similarity=0.317 Sum_probs=90.8
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHHHHHHHHhhCC
Q 008534 179 SVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRL 258 (562)
Q Consensus 179 ~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~ 258 (562)
.+.+|++++|+||||||||||+++|+|.+. +..+|.|...+.++....+...++++|.......++.
T Consensus 119 ~~~~~g~i~I~GptGSGKTTlL~~l~g~~~-~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~------------ 185 (356)
T 3jvv_A 119 SDVPRGLVLVTGPTGSGKSTTLAAMLDYLN-NTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGF------------ 185 (356)
T ss_dssp HHCSSEEEEEECSTTSCHHHHHHHHHHHHH-HHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCH------------
T ss_pred HhCCCCEEEEECCCCCCHHHHHHHHHhccc-CCCCcEEEEccCcHHhhhhccccceeeeeeccccCCH------------
Confidence 678999999999999999999999998553 2235777655444432233334555554322211111
Q ss_pred CCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 008534 259 PNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQML 338 (562)
Q Consensus 259 ~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L 338 (562)
.+ +||+||..+|++|++|||| |.++. +.+
T Consensus 186 ----------------------------------------~~----~La~aL~~~PdvillDEp~---d~e~~----~~~ 214 (356)
T 3jvv_A 186 ----------------------------------------SE----ALRSALREDPDIILVGEMR---DLETI----RLA 214 (356)
T ss_dssp ----------------------------------------HH----HHHHHTTSCCSEEEESCCC---SHHHH----HHH
T ss_pred ----------------------------------------HH----HHHHHhhhCcCEEecCCCC---CHHHH----HHH
Confidence 11 9999999999999999999 66654 344
Q ss_pred HHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCC
Q 008534 339 QDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKG 372 (562)
Q Consensus 339 ~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G 372 (562)
.+++..|+|||+++|+.+. ...+||++.|..|
T Consensus 215 ~~~~~~G~~vl~t~H~~~~--~~~~dRli~l~~~ 246 (356)
T 3jvv_A 215 LTAAETGHLVFGTLHTTSA--AKTIDRVVDVFPA 246 (356)
T ss_dssp HHHHHTTCEEEEEESCSSH--HHHHHHHHHTSCH
T ss_pred HHHHhcCCEEEEEEccChH--HHHHHHHhhhcCc
Confidence 4446679999999999764 3789999998654
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=99.69 E-value=5.4e-18 Score=164.25 Aligned_cols=169 Identities=16% Similarity=0.163 Sum_probs=110.8
Q ss_pred ccceeeceEE-EEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh-hcc---CcEEEEccCCCCCCC
Q 008534 169 EKDILNGITG-SVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-SLK---SKIGFVTQDDVLFPH 243 (562)
Q Consensus 169 ~~~iL~~vs~-~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~-~~~---~~igyV~Q~~~l~~~ 243 (562)
+.+.|+++.+ .+++|++++|+||||||||||++.|++... +.+|.|.+.+.+... .+. ..+++.+|+.... .
T Consensus 8 g~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 84 (235)
T 2w0m_A 8 GILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGL--RDGDPCIYVTTEESRDSIIRQAKQFNWDFEEYIEK-K 84 (235)
T ss_dssp SCHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHH--HHTCCEEEEESSSCHHHHHHHHHHTTCCCGGGBTT-T
T ss_pred CchHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHH--HCCCeEEEEEcccCHHHHHHHHHHhcchHHHHhhC-C
Confidence 4567899886 899999999999999999999999997543 234566554433221 110 0122222211000 0
Q ss_pred CCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCC--EEEEeC
Q 008534 244 LTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPS--LLFLDE 321 (562)
Q Consensus 244 lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~--iLlLDE 321 (562)
+.+ . .... ..++ .. . .....|.++.++...+.+...+|+ ++++||
T Consensus 85 ~~~-----------~-~~~~------------~~~~-~~----~----~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe 131 (235)
T 2w0m_A 85 LII-----------I-DALM------------KEKE-DQ----W----SLVNLTPEELVNKVIEAKQKLGYGKARLVIDS 131 (235)
T ss_dssp EEE-----------E-ECCC-----------------CT----T----BCSSCCHHHHHHHHHHHHHHHCSSCEEEEEET
T ss_pred EEE-----------E-eccc------------cccC-ce----e----eecCCCHHHHHHHHHHHHHhhCCCceEEEEEC
Confidence 000 0 0000 0000 00 0 012459999999888888888999 999999
Q ss_pred CCCCC--CHHHHHHHHHHHHHHHH-CCcEEEEEecCCC-------hHHHhcCCEEEEEcCCe
Q 008534 322 PTSGL--DSTTALRIVQMLQDIAE-AGKTVVTTIHQPS-------SRLFHKFDKLILLGKGS 373 (562)
Q Consensus 322 PTsgL--D~~~~~~i~~~L~~l~~-~g~Tvii~tH~~~-------~~i~~~~D~i~vL~~G~ 373 (562)
||+++ |+....++++.|+++++ .|.|||+++|+.. ..+...||+|++|+..+
T Consensus 132 ~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~~ 193 (235)
T 2w0m_A 132 VSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRMI 193 (235)
T ss_dssp GGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEEE
T ss_pred chHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEEe
Confidence 99888 99999999999999865 5899999999972 23678899999998653
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.67 E-value=2.9e-19 Score=171.24 Aligned_cols=178 Identities=14% Similarity=0.087 Sum_probs=98.1
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC---CCCccEEEECCEeCCh
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME---PTVGGSITYNDHPYSK 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~---~~~~G~I~i~G~~~~~ 225 (562)
.|+++|++|.|. ..+|++ |.+++|..++|+|+||||||||++.|+|.... .+..|.+.+.+.-.
T Consensus 3 ~l~~~~~~~~~~---------~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~-- 69 (210)
T 1pui_A 3 NLNYQQTHFVMS---------APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFE-- 69 (210)
T ss_dssp --------CEEE---------ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEE--
T ss_pred chhhhhhhheee---------cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEE--
Confidence 478999999982 257888 88999999999999999999999999985410 23456554322100
Q ss_pred hccCcEEEEccCCCCC----CCCC---HHHHHHHHHhh-CC----------CCCccHHHHHHHHHHHHHHcCCCcccccc
Q 008534 226 SLKSKIGFVTQDDVLF----PHLT---VKETLTYAALL-RL----------PNTLTKQQKEKRAIDVINELGLERCQDTM 287 (562)
Q Consensus 226 ~~~~~igyV~Q~~~l~----~~lT---V~enl~~~~~~-~~----------~~~~~~~~~~~~v~~~l~~lgL~~~~~t~ 287 (562)
+...+-++ +.+-+. +.-. .+..+.+.... +. ....+. .+..+.+++...+++.. .
T Consensus 70 -~~~~~~l~-Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~--~~~~~~~~~~~~~~~~~---~ 142 (210)
T 1pui_A 70 -VADGKRLV-DLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKD--LDQQMIEWAVDSNIAVL---V 142 (210)
T ss_dssp -EETTEEEE-ECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCH--HHHHHHHHHHHTTCCEE---E
T ss_pred -ecCCEEEE-ECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCch--hHHHHHHHHHHcCCCeE---E
Confidence 00011111 111110 0000 11122211110 00 001111 12234556666666532 1
Q ss_pred ccCcccCCCChhHHHH-HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcE
Q 008534 288 IGGSFVRGVSGGERKR-VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKT 347 (562)
Q Consensus 288 vg~~~~~~LSGGqrqR-v~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~T 347 (562)
+++ ....+|+||||| +.++++++.+|.++++|||||++|.....++++.|.++..++.|
T Consensus 143 v~n-K~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~~~~ 202 (210)
T 1pui_A 143 LLT-KADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSEMQP 202 (210)
T ss_dssp EEE-CGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC----
T ss_pred EEe-cccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhhccc
Confidence 222 245699999999 89999999999999999999999999999999999998765544
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.3e-18 Score=186.41 Aligned_cols=165 Identities=16% Similarity=0.201 Sum_probs=97.3
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhc
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~ 227 (562)
..|+++||++.| +.+.+++|++|+| +|+||||||||||+++|+|.....+..|.+.+++.+ ...
T Consensus 10 ~~l~~~~l~~~y--------~~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~--t~~ 73 (418)
T 2qag_C 10 GYVGFANLPNQV--------YRKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKK--TVQ 73 (418)
T ss_dssp -----CCCCCCT--------TTTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-------CCE
T ss_pred CcEEEEecceeE--------CCEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCcc--cee
Confidence 368899999876 3567999999998 999999999999999999965311212222222211 112
Q ss_pred cCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHH
Q 008534 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (562)
Q Consensus 228 ~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA 307 (562)
...++|++|++.+++.+||.||+.++.... .......+.+.++ ..++.+++||++||
T Consensus 74 ~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~------~~~~~~~i~~~i~-----------------~~~~~~l~qr~~Ia 130 (418)
T 2qag_C 74 VEQSKVLIKEGGVQLLLTIVDTPGFGDAVD------NSNCWQPVIDYID-----------------SKFEDYLNAESRVN 130 (418)
T ss_dssp EEEEECC------CEEEEEEECC-----------------CHHHHHHHH-----------------HHHHHHTTTSCC-C
T ss_pred eeeEEEEEecCCcccceeeeechhhhhhcc------chhhHHHHHHHHH-----------------HHHHHHHHHHHHHH
Confidence 356899999998888899999998864321 0000011212221 13567788899999
Q ss_pred HHHhhCCC---EEEEeCCC-CCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCC
Q 008534 308 NEIIINPS---LLFLDEPT-SGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPS 356 (562)
Q Consensus 308 raLl~~P~---iLlLDEPT-sgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~ 356 (562)
|+++.+|+ +|++|||| .+||+... +.++.+.. +.+||+++|..+
T Consensus 131 Ral~~d~~~~vlL~ldePt~~~L~~~d~----~~lk~L~~-~v~iIlVinK~D 178 (418)
T 2qag_C 131 RRQMPDNRVQCCLYFIAPSGHGLKPLDI----EFMKRLHE-KVNIIPLIAKAD 178 (418)
T ss_dssp CCCCCCC-CCEEEEECCC-CCSCCHHHH----HHHHHHTT-TSEEEEEEESTT
T ss_pred HHhccCCCeeEEEEEecCcccCCCHHHH----HHHHHHhc-cCcEEEEEEccc
Confidence 99999999 99999999 69998863 34445543 788888888743
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=99.65 E-value=1.5e-16 Score=160.74 Aligned_cols=150 Identities=17% Similarity=0.222 Sum_probs=103.6
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHHHHH-HHHhhC
Q 008534 179 SVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLT-YAALLR 257 (562)
Q Consensus 179 ~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~~~igyV~Q~~~l~~~lTV~enl~-~~~~~~ 257 (562)
-+++|++++|+||||||||||++.|++.+. .|.++ .|.+... ...+.|+..++.. ..+.+.+. ++.
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~----~g~~~-~g~~~~~--~~~v~~~~~e~~~---~~~~~r~~~~g~--- 92 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA----GGPDL-LEVGELP--TGPVIYLPAEDPP---TAIHHRLHALGA--- 92 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH----TCCCT-TCCCCCC--CCCEEEEESSSCH---HHHHHHHHHHHT---
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh----cCCCc-CCCccCC--CccEEEEECCCCH---HHHHHHHHHHHh---
Confidence 488999999999999999999999998432 45553 3443321 3457888766532 01222221 111
Q ss_pred CCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCC--CCCHHHH---H
Q 008534 258 LPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTS--GLDSTTA---L 332 (562)
Q Consensus 258 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTs--gLD~~~~---~ 332 (562)
.... ....++++.+++.+..+. .+..||+||+|++ ++++.+|+++++||||+ ++|.... .
T Consensus 93 ---~~~~----~~~~~~~~~l~l~~~~~~-----~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~ 157 (279)
T 1nlf_A 93 ---HLSA----EERQAVADGLLIQPLIGS-----LPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMA 157 (279)
T ss_dssp ---TSCH----HHHHHHHHHEEECCCTTS-----CCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHH
T ss_pred ---hcCh----hhhhhccCceEEeecCCC-----CcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHH
Confidence 1111 224556777777654433 3568999998865 68899999999999999 9998544 7
Q ss_pred HHHHHHHHHHH-CCcEEEEEecCCC
Q 008534 333 RIVQMLQDIAE-AGKTVVTTIHQPS 356 (562)
Q Consensus 333 ~i~~~L~~l~~-~g~Tvii~tH~~~ 356 (562)
.+++.|+++++ .|+|||+++|+..
T Consensus 158 ~~~~~L~~l~~~~g~tvi~i~H~~~ 182 (279)
T 1nlf_A 158 QVIGRMEAIAADTGCSIVFLHHASK 182 (279)
T ss_dssp HHHHHHHHHHHHHCCEEEEEEEC--
T ss_pred HHHHHHHHHHHHcCCEEEEEecCCC
Confidence 88889998864 5999999999854
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=9.8e-18 Score=164.67 Aligned_cols=153 Identities=17% Similarity=0.186 Sum_probs=103.0
Q ss_pred eceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC-CCccEEEECCEeCChhccCcEEEEccCCCCCCCCCH----HH
Q 008534 174 NGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP-TVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTV----KE 248 (562)
Q Consensus 174 ~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~-~~~G~I~i~G~~~~~~~~~~igyV~Q~~~l~~~lTV----~e 248 (562)
+.-.-..++|++++|+||||||||||+++|+|... | ...|.|.+.+.+.....++.++|+||++.+|+.+++ .|
T Consensus 7 ~~~~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~-p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~~~~f~E 85 (219)
T 1s96_A 7 HHHHHHMAQGTLYIVSAPSGAGKSSLIQALLKTQP-LYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLE 85 (219)
T ss_dssp --------CCCEEEEECCTTSCHHHHHHHHHHHSC-TTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEE
T ss_pred ccccccCCCCcEEEEECCCCCCHHHHHHHHhccCC-CCceEEEEEecCCCCCcccccCceEEECCHHHHHHHHhcCHHHH
Confidence 34445689999999999999999999999999653 3 367999998877654445678999998766654444 22
Q ss_pred HHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 008534 249 TLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDS 328 (562)
Q Consensus 249 nl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~ 328 (562)
|+.+. |.. .+.| +++ ++.++..++++||| ||+
T Consensus 86 ~~~~~-----------------------------------~~~--yg~~---~~~---v~~~l~~G~illLD-----LD~ 117 (219)
T 1s96_A 86 HAEVF-----------------------------------GNY--YGTS---REA---IEQVLATGVDVFLD-----IDW 117 (219)
T ss_dssp EEEET-----------------------------------TEE--EEEE---HHH---HHHHHTTTCEEEEE-----CCH
T ss_pred HHHHH-----------------------------------hcc--CCCC---HHH---HHHHHhcCCeEEEE-----ECH
Confidence 22111 000 0111 222 34555668999999 999
Q ss_pred HHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHHHHHHh
Q 008534 329 TTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSS 389 (562)
Q Consensus 329 ~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~~~f~~ 389 (562)
.++..+.+.+. ++.||++++|++.. +. .|+ +.+| .++++++...+..
T Consensus 118 ~~~~~i~~~l~----~~~tI~i~th~~~~-l~---~Rl--~~rG----~~~~e~i~~rl~~ 164 (219)
T 1s96_A 118 QGAQQIRQKMP----HARSIFILPPSKIE-LD---RRL--RGRG----QDSEEVIAKRMAQ 164 (219)
T ss_dssp HHHHHHHHHCT----TCEEEEEECSSHHH-HH---HHH--HTTS----CSCHHHHHHHHHH
T ss_pred HHHHHHHHHcc----CCEEEEEECCCHHH-HH---HHH--HHcC----CCCHHHHHHHHHH
Confidence 99999998876 58999999999653 33 243 7778 6788888766543
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.62 E-value=3e-20 Score=176.47 Aligned_cols=169 Identities=12% Similarity=0.062 Sum_probs=113.4
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCc
Q 008534 183 GEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTL 262 (562)
Q Consensus 183 Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~ 262 (562)
|++++|+||||||||||+++|++ +.+|.+.++|.++... ..+++++|....++.+++++++.+.+...
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~-----~~~g~~~i~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----- 69 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA-----QLDNSAYIEGDIINHM--VVGGYRPPWESDELLALTWKNITDLTVNF----- 69 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH-----HSSSEEEEEHHHHHTT--CCTTCCCGGGCHHHHHHHHHHHHHHHHHH-----
T ss_pred CeEEEEECCCCCcHHHHHHHHhc-----ccCCeEEEcccchhhh--hccccccCccchhHHHHHHHHHHHHHHHH-----
Confidence 78999999999999999999997 2368999998765322 23567777665555568888887643211
Q ss_pred cHHHHHHHHHHHHHHcCCCccccccccC---cccCCC--ChhHHHHHHHHH------HHhhCCCEEEEeCCCCCCCHHHH
Q 008534 263 TKQQKEKRAIDVINELGLERCQDTMIGG---SFVRGV--SGGERKRVCIGN------EIIINPSLLFLDEPTSGLDSTTA 331 (562)
Q Consensus 263 ~~~~~~~~v~~~l~~lgL~~~~~t~vg~---~~~~~L--SGGqrqRv~IAr------aLl~~P~iLlLDEPTsgLD~~~~ 331 (562)
+. -+.....+...+. ...+.+ |+|++|++.++. +|+.+|+...+|+ +||+...
T Consensus 70 ------------~~-~~~~~ild~~~~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~ 133 (189)
T 2bdt_A 70 ------------LL-AQNDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCL 133 (189)
T ss_dssp ------------HH-TTCEEEEESCCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGG
T ss_pred ------------Hh-cCCcEEEeeccCHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHH
Confidence 00 0100011110000 011234 899999988888 9999999888884 8999888
Q ss_pred HHHHHHHHHHHHCCcEEEEEecC-CChHHHhcCCEEEEEcCCeEEEecChHHH
Q 008534 332 LRIVQMLQDIAEAGKTVVTTIHQ-PSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (562)
Q Consensus 332 ~~i~~~L~~l~~~g~Tvii~tH~-~~~~i~~~~D~i~vL~~G~iv~~G~~~el 383 (562)
.. ++.+..+.+.+.++|.++|. +++ +.+.||+|+ ++|++++.|+++-+
T Consensus 134 ~~-~~~~~~~~~~~~~ii~tsh~~~~~-~e~~~~~i~--~~g~~~~~~~~~~~ 182 (189)
T 2bdt_A 134 EL-VEEFESKGIDERYFYNTSHLQPTN-LNDIVKNLK--TNPRFIFCMAGDPL 182 (189)
T ss_dssp HH-HHHHHHTTCCTTSEEECSSSCGGG-HHHHHHHHH--HCGGGSCC------
T ss_pred HH-HHHHhhcCCCccEEEeCCCCChhh-HHHHHHHHh--hCCcEEEeecCCch
Confidence 87 88888776567899999998 654 678899999 99999999987654
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=6.1e-16 Score=149.12 Aligned_cols=156 Identities=19% Similarity=0.209 Sum_probs=101.1
Q ss_pred ccceeeceEE-EEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEccCCCCCCCCCHH
Q 008534 169 EKDILNGITG-SVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVK 247 (562)
Q Consensus 169 ~~~iL~~vs~-~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~~~igyV~Q~~~l~~~lTV~ 247 (562)
+.+.|+.+.. -+++|++++|+||||||||||++.|++ . . ++. +.|+..+..+ +..
T Consensus 5 G~~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~--~-~~~---------------v~~i~~~~~~----~~~ 60 (220)
T 2cvh_A 5 GTKSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--L--S-GKK---------------VAYVDTEGGF----SPE 60 (220)
T ss_dssp SCHHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--H--H-CSE---------------EEEEESSCCC----CHH
T ss_pred CcHHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--H--c-CCc---------------EEEEECCCCC----CHH
Confidence 3456777764 799999999999999999999999997 1 1 222 2233332211 111
Q ss_pred HHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhH--HHHHHHHHHHhhC-CCEEEEeCCCC
Q 008534 248 ETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGE--RKRVCIGNEIIIN-PSLLFLDEPTS 324 (562)
Q Consensus 248 enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGq--rqRv~IAraLl~~-P~iLlLDEPTs 324 (562)
.-....... .... +++++.+. +..+++++ +++++.+++++.+ |+++++||||+
T Consensus 61 ~~~~~~~~~----~~~~-------~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~ 116 (220)
T 2cvh_A 61 RLVQMAETR----GLNP-------EEALSRFI-------------LFTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITA 116 (220)
T ss_dssp HHHHHHHTT----TCCH-------HHHHHHEE-------------EECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCC
T ss_pred HHHHHHHhc----CCCh-------HHHhhcEE-------------EEecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHH
Confidence 111110000 0111 11222221 12355554 5688888999986 99999999999
Q ss_pred CCCHHH--------HHHHHHHHHHHHHC-CcEEEEEecCCCh------------HHHhcCCEEEEEcCC
Q 008534 325 GLDSTT--------ALRIVQMLQDIAEA-GKTVVTTIHQPSS------------RLFHKFDKLILLGKG 372 (562)
Q Consensus 325 gLD~~~--------~~~i~~~L~~l~~~-g~Tvii~tH~~~~------------~i~~~~D~i~vL~~G 372 (562)
.+|+.. ..++++.|++++++ |.|||+++|.... .+...||.|++|+..
T Consensus 117 ~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 117 HYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp CTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred HhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 999743 24566668887654 8999999998542 456789999999764
|
| >3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B* | Back alignment and structure |
|---|
Probab=99.59 E-value=3.8e-15 Score=141.12 Aligned_cols=89 Identities=18% Similarity=0.309 Sum_probs=72.0
Q ss_pred cCCCChhHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEE
Q 008534 293 VRGVSGGERKRVCIGNEIII----NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLIL 368 (562)
Q Consensus 293 ~~~LSGGqrqRv~IAraLl~----~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~v 368 (562)
+..||||||||++||++|+. +|+++||||||+|||+.++..+.+.|+++.+ +.++|++||+. .+...||+++.
T Consensus 62 ~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~-~~~~ivith~~--~~~~~ad~i~~ 138 (173)
T 3kta_B 62 IEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK-ESQFIVITLRD--VMMANADKIIG 138 (173)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT-TSEEEEECSCH--HHHTTCSEEEE
T ss_pred cccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc-CCEEEEEEecH--HHHHhCCEEEE
Confidence 46799999999999999974 4699999999999999999999999999865 56899999995 35789999986
Q ss_pred E--cCCeE-EEecChHHHH
Q 008534 369 L--GKGSL-LYFGKASEAM 384 (562)
Q Consensus 369 L--~~G~i-v~~G~~~el~ 384 (562)
+ .+|.. +...+.++..
T Consensus 139 v~~~~g~s~~~~~~~~~~~ 157 (173)
T 3kta_B 139 VSMRDGVSKVVSLSLEKAM 157 (173)
T ss_dssp EEEETTEEEEEECCHHHHH
T ss_pred EEecCCEEEEEEEEcHHHH
Confidence 5 46643 3334444433
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.56 E-value=7.2e-17 Score=172.70 Aligned_cols=174 Identities=11% Similarity=0.127 Sum_probs=111.7
Q ss_pred ccceeeceEEEEeCCeE--EEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEccCCCCCCCCCH
Q 008534 169 EKDILNGITGSVNPGEV--LALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTV 246 (562)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~--~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~~~igyV~Q~~~l~~~lTV 246 (562)
+.+ |++|||++++|++ ++|+||||||||||+|+|+|... .|.-. .... ....++.++|++|++.+++.+||
T Consensus 27 ~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l----~g~~~-~~~~-~~~~~~~i~~v~Q~~~l~~~ltv 99 (427)
T 2qag_B 27 SLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF----EGEPA-THTQ-PGVQLQSNTYDLQESNVRLKLTI 99 (427)
T ss_dssp --C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC------------CC-SSCEEEEEEEEEEC--CEEEEEE
T ss_pred Cee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccc----cCCcC-CCCC-ccceEeeEEEEeecCccccccch
Confidence 345 9999999999999 99999999999999999999532 22211 0000 11234579999999998888999
Q ss_pred HHHHHHHHhhCCCCCc-cH---HHHHHHHHHHHHHc-CCCc----ccccc----cc--CcccCCCChhHHHHHHHHHHHh
Q 008534 247 KETLTYAALLRLPNTL-TK---QQKEKRAIDVINEL-GLER----CQDTM----IG--GSFVRGVSGGERKRVCIGNEII 311 (562)
Q Consensus 247 ~enl~~~~~~~~~~~~-~~---~~~~~~v~~~l~~l-gL~~----~~~t~----vg--~~~~~~LSGGqrqRv~IAraLl 311 (562)
.||+.|+.... ... .. ......+.+.+... ++.. ..|+. +. ....++|+-.+ +.|+++|.
T Consensus 100 ~D~~~~g~~~~--~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D---ieilk~L~ 174 (427)
T 2qag_B 100 VSTVGFGDQIN--KEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD---LVTMKKLD 174 (427)
T ss_dssp EEEECCCC-CC--HHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH---HHHHHHTC
T ss_pred hhhhhhhhccc--cchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH---HHHHHHHh
Confidence 99998753210 000 00 11233445555554 4331 11221 11 01113566665 79999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHH-HHHCCcEEEEEecC
Q 008534 312 INPSLLFLDEPTSGLDSTTALRIVQMLQD-IAEAGKTVVTTIHQ 354 (562)
Q Consensus 312 ~~P~iLlLDEPTsgLD~~~~~~i~~~L~~-l~~~g~Tvii~tH~ 354 (562)
.+++|+++|||+..|.+.....+.+.+++ +...|.+|+.++.+
T Consensus 175 ~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~ 218 (427)
T 2qag_B 175 SKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTD 218 (427)
T ss_dssp SCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC--
T ss_pred hCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCC
Confidence 99999999999999999988999999986 77779999888764
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.55 E-value=2.9e-16 Score=148.59 Aligned_cols=152 Identities=13% Similarity=0.032 Sum_probs=94.8
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChh--ccCcEEEEccCCCCCCCCCHHHHHHHHHhh
Q 008534 179 SVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS--LKSKIGFVTQDDVLFPHLTVKETLTYAALL 256 (562)
Q Consensus 179 ~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~--~~~~igyV~Q~~~l~~~lTV~enl~~~~~~ 256 (562)
.+++|++++|+||||||||||+++|+|. +..|.|.++|.++... .++.++|++|++. +.++|.+|+.+.+..
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~----~~~g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~l~~~~~~ 78 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL----PGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQ--QNRMIMQIAADVAGR 78 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC----SSSCEEEECTTHHHHTCCSSCCCTTSSSHHH--HHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc----cCCCeEEEcccchhhhhhcccccCCccchhh--hhHHHHHHHHHHHHH
Confidence 4789999999999999999999999985 2369999999765322 1234678887654 357899998765321
Q ss_pred CCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH
Q 008534 257 RLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQ 336 (562)
Q Consensus 257 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~ 336 (562)
....... ..++.++..+++..... . +..+..+|+|++||+.++|++.++|+++ +|+.....+.+
T Consensus 79 ~~~~~~~-----~~~~~~~~~~~l~~~~~--~-~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~ 142 (191)
T 1zp6_A 79 YAKEGYF-----VILDGVVRPDWLPAFTA--L-ARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHS 142 (191)
T ss_dssp HHHTSCE-----EEECSCCCTTTTHHHHT--T-CSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHH
T ss_pred HhccCCe-----EEEeccCcHHHHHHHHh--c-CCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHH
Confidence 1000000 00000001111111110 0 1123469999999999999999999876 68887777777
Q ss_pred HHHHHHHCCcEEEEEe
Q 008534 337 MLQDIAEAGKTVVTTI 352 (562)
Q Consensus 337 ~L~~l~~~g~Tvii~t 352 (562)
.++.+...+..+|.++
T Consensus 143 ~~~~l~~~~~~~i~t~ 158 (191)
T 1zp6_A 143 QFADLGAFEHHVLPVS 158 (191)
T ss_dssp HTTCCGGGGGGEEECT
T ss_pred HHhccCcccccEEECC
Confidence 7765543233333333
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=7.9e-16 Score=162.59 Aligned_cols=132 Identities=21% Similarity=0.322 Sum_probs=98.5
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHHHH
Q 008534 171 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETL 250 (562)
Q Consensus 171 ~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~~~igyV~Q~~~l~~~lTV~enl 250 (562)
.+|++++ +++|++++|+||||||||||+++|+|.+. +..+|.|.+.|.++...++..++||+|..
T Consensus 126 ~~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~-~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~------------ 190 (372)
T 2ewv_A 126 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYIN-QTKSYHIITIEDPIEYVFKHKKSIVNQRE------------ 190 (372)
T ss_dssp SSHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHH-HHSCCEEEEEESSCCSCCCCSSSEEEEEE------------
T ss_pred HHHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcC-cCCCcEEEEecccHhhhhccCceEEEeee------------
Confidence 4678876 89999999999999999999999998542 22269998877666434566788888841
Q ss_pred HHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 008534 251 TYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTT 330 (562)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~ 330 (562)
+|+. +..+ +.+|+++|..+|++|++|||+ |+.+
T Consensus 191 ---------------------------~g~~-----------~~~~------~~~l~~~L~~~pd~illdE~~---d~e~ 223 (372)
T 2ewv_A 191 ---------------------------VGED-----------TKSF------ADALRAALREDPDVIFVGEMR---DLET 223 (372)
T ss_dssp ---------------------------BTTT-----------BSCS------HHHHHHHTTSCCSEEEESCCC---SHHH
T ss_pred ---------------------------cCCC-----------HHHH------HHHHHHHhhhCcCEEEECCCC---CHHH
Confidence 2221 0134 469999999999999999999 7766
Q ss_pred HHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEc
Q 008534 331 ALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG 370 (562)
Q Consensus 331 ~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~ 370 (562)
... .++. +..|.+|++++|..+ +...+||++.|.
T Consensus 224 ~~~---~l~~-~~~g~~vi~t~H~~~--~~~~~~rl~~l~ 257 (372)
T 2ewv_A 224 VET---ALRA-AETGHLVFGTLHTNT--AIDTIHRIVDIF 257 (372)
T ss_dssp HHH---HHHH-HTTTCEEEECCCCCS--HHHHHHHHHHTS
T ss_pred HHH---HHHH-HhcCCEEEEEECcch--HHHHHHHHHHhc
Confidence 443 3443 345899999999954 567888887764
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=99.54 E-value=1.8e-18 Score=181.97 Aligned_cols=162 Identities=13% Similarity=0.099 Sum_probs=102.5
Q ss_pred eeeceEEEEeC--CeEEEEECCCCCcHHHHHHHHHcCCCCCCCc----cEEEEC----CEeCC---hhccCcEEEEccCC
Q 008534 172 ILNGITGSVNP--GEVLALMGPSGSGKTTLLNLLSGRLMEPTVG----GSITYN----DHPYS---KSLKSKIGFVTQDD 238 (562)
Q Consensus 172 iL~~vs~~i~~--Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~----G~I~i~----G~~~~---~~~~~~igyV~Q~~ 238 (562)
+.+.|+++|.+ |+.++|+||||||||||+++|+|.+. +.+ |+|.++ |.++. ..+ +.|++++|++
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~--~~~~~e~G~i~i~~~~~~~~~~~~~~~~-~~I~~~~q~~ 233 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFN--TTSAWEYGREFVFEKLGGDEQAMQYSDY-PQMALGHQRY 233 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTT--CEEECCTTHHHHHHSSSSCTTSSCTTTH-HHHHHHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhC--CCcchhhHHHHHHhhcCCCcccCChhHH-HHHHHHHHHH
Confidence 46789999999 99999999999999999999999643 346 666653 22210 011 2234444433
Q ss_pred CCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHh-hCCCEE
Q 008534 239 VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEII-INPSLL 317 (562)
Q Consensus 239 ~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl-~~P~iL 317 (562)
.++. .|+.|||.+. + .+..++ .+..+|+|++||..+++++. .+|+++
T Consensus 234 ~~~~-~t~~~nl~~~-------------------------~-~~~~~~-----~~~~~~~~~~~~~~i~~~~~~~~~~ll 281 (365)
T 1lw7_A 234 IDYA-VRHSHKIAFI-------------------------D-TDFITT-----QAFCIQYEGKAHPFLDSMIKEYPFDVT 281 (365)
T ss_dssp HHHH-HHHCSSEEEE-------------------------S-SCHHHH-----HHHHHHHHSCCCHHHHHHHHHSCCSEE
T ss_pred HHHH-HhccCCEEEE-------------------------e-CCchHH-----HHHHHHHcCCCCHHHHHHHhhcCCCEE
Confidence 2221 2333332211 0 000111 11246677788888888875 599999
Q ss_pred EEeC---CC------CCCCHHHHHHHHHHHHHHHH-CCcEEEEEecCCChHHHhcCCEEEEEc
Q 008534 318 FLDE---PT------SGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLG 370 (562)
Q Consensus 318 lLDE---PT------sgLD~~~~~~i~~~L~~l~~-~g~Tvii~tH~~~~~i~~~~D~i~vL~ 370 (562)
|||| |+ .++|+..+..+.+.|+++.+ .|.+||+++|. + ...+++|++.+|+
T Consensus 282 lLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~-~-~~~r~~~~i~~i~ 342 (365)
T 1lw7_A 282 ILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESP-S-YLDRYNQVKAVIE 342 (365)
T ss_dssp EEEECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECS-S-HHHHHHHHHHHHH
T ss_pred EECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCC-C-HHHHHHHHHHHHH
Confidence 9999 65 58999999999999998754 48899999975 3 3456666665554
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=99.52 E-value=1.1e-17 Score=165.80 Aligned_cols=153 Identities=15% Similarity=0.191 Sum_probs=101.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHH---cCCCCCCCccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHHHHHHHHhhC-
Q 008534 182 PGEVLALMGPSGSGKTTLLNLLS---GRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLR- 257 (562)
Q Consensus 182 ~Ge~~alvGpsGsGKSTLl~~L~---G~l~~~~~~G~I~i~G~~~~~~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~- 257 (562)
++++++|+||||||||||+++|+ |... +..|+|.++|.+........+.+++|+..+++..++.+++.......
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~--~~~G~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~~ 103 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQH--LSSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVITRLMMSELENRR 103 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCC--EEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTCT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeE--ecHHHHHHHHHhcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Confidence 46899999999999999999999 9543 45788888776543233344566788888888889999998753210
Q ss_pred -C---CCCccHHHHHHHHHHHHHHcCCC--ccc-------cccccCcccCCCChhHHHHHHHHHHH-hhCCCEEEEe---
Q 008534 258 -L---PNTLTKQQKEKRAIDVINELGLE--RCQ-------DTMIGGSFVRGVSGGERKRVCIGNEI-IINPSLLFLD--- 320 (562)
Q Consensus 258 -~---~~~~~~~~~~~~v~~~l~~lgL~--~~~-------~t~vg~~~~~~LSGGqrqRv~IAraL-l~~P~iLlLD--- 320 (562)
. -...+... ..+..+....... -.. -..+.++.+..||| |+ ++| +.+|++++||
T Consensus 104 ~~~~il~g~~~~~--~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~lSg----rv---~al~~~~P~~lllD~~~ 174 (246)
T 2bbw_A 104 GQHWLLDGFPRTL--GQAEALDKICEVDLVISLNIPFETLKDRLSRRWIHPPSG----RV---YNLDFNPPHVHGIDDVT 174 (246)
T ss_dssp TSCEEEESCCCSH--HHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTT----EE---EETTTSCCSSTTBCTTT
T ss_pred CCeEEEECCCCCH--HHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCCCcCCCC----Cc---cccccCCCccccccccc
Confidence 0 00111111 1122221111111 000 01112334567999 66 788 9999999999
Q ss_pred -CCCCCCCHHHHHHHHHHHHHHHHCC
Q 008534 321 -EPTSGLDSTTALRIVQMLQDIAEAG 345 (562)
Q Consensus 321 -EPTsgLD~~~~~~i~~~L~~l~~~g 345 (562)
|||++||+.+...+.+.|+++.+.+
T Consensus 175 ~EP~~~ld~~~~~~i~~~l~~~~~~~ 200 (246)
T 2bbw_A 175 GEPLVQQEDDKPEAVAARLRQYKDVA 200 (246)
T ss_dssp CCBCBCCGGGSHHHHHHHHHHHHHHH
T ss_pred ccccccCCCCcHHHHHHHHHHHHHhH
Confidence 9999999999999999999887653
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=99.52 E-value=4.3e-16 Score=163.89 Aligned_cols=136 Identities=18% Similarity=0.205 Sum_probs=97.3
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeC-C-hhccCcEEEEc-cCCCCCCCCCHHHH
Q 008534 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPY-S-KSLKSKIGFVT-QDDVLFPHLTVKET 249 (562)
Q Consensus 173 L~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~-~-~~~~~~igyV~-Q~~~l~~~lTV~en 249 (562)
++++|+.|++|++++|+||||||||||+++|+|.+ + +.+|.|+++|..- . ...++.++|++ |++.+
T Consensus 165 ~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~-~-~~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~--------- 233 (361)
T 2gza_A 165 MSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEI-P-FDQRLITIEDVPELFLPDHPNHVHLFYPSEAKE--------- 233 (361)
T ss_dssp HHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTS-C-TTSCEEEEESSSCCCCTTCSSEEEEECC--------------
T ss_pred HHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcC-C-CCceEEEECCccccCccccCCEEEEeecCcccc---------
Confidence 39999999999999999999999999999999854 3 4589999998531 1 12567789998 65432
Q ss_pred HHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 008534 250 LTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDST 329 (562)
Q Consensus 250 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~ 329 (562)
+++++..+|-.|+.+|..+|+.+++|||..
T Consensus 234 ---------------------------------------------~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~----- 263 (361)
T 2gza_A 234 ---------------------------------------------EENAPVTAATLLRSCLRMKPTRILLAELRG----- 263 (361)
T ss_dssp --------------------------------------------------CCHHHHHHHHTTSCCSEEEESCCCS-----
T ss_pred ---------------------------------------------ccccccCHHHHHHHHHhcCCCEEEEcCchH-----
Confidence 011222345556666666899999999986
Q ss_pred HHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCe
Q 008534 330 TALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGS 373 (562)
Q Consensus 330 ~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~ 373 (562)
.++.+.|+.+.....|++.++|..+ ....+||+..+..|.
T Consensus 264 --~~~~~~l~~l~~g~~~~l~t~H~~~--~~~~~~Rl~~l~~~~ 303 (361)
T 2gza_A 264 --GEAYDFINVAASGHGGSITSCHAGS--CELTFERLALMVLQN 303 (361)
T ss_dssp --THHHHHHHHHHTTCCSCEEEEECSS--HHHHHHHHHHHHTTS
T ss_pred --HHHHHHHHHHhcCCCeEEEEECCCC--HHHHHHHHHHHHhcc
Confidence 2455666666543457899999965 467789999888764
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=99.50 E-value=7.5e-18 Score=174.24 Aligned_cols=156 Identities=17% Similarity=0.114 Sum_probs=102.2
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCCC------CCCccEEEECCEeCCh-------------------hccCcEEEE---c
Q 008534 184 EVLALMGPSGSGKTTLLNLLSGRLME------PTVGGSITYNDHPYSK-------------------SLKSKIGFV---T 235 (562)
Q Consensus 184 e~~alvGpsGsGKSTLl~~L~G~l~~------~~~~G~I~i~G~~~~~-------------------~~~~~igyV---~ 235 (562)
++++|+|+||||||||+|.|.|.... .+..|+|.+||.++.. .+++.++++ +
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~ 84 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence 68999999999999999999985310 2457999999988642 123447777 6
Q ss_pred cCCCCCCCCCHHHHHHHHHhhCCCCCc---cHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhh
Q 008534 236 QDDVLFPHLTVKETLTYAALLRLPNTL---TKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIII 312 (562)
Q Consensus 236 Q~~~l~~~lTV~enl~~~~~~~~~~~~---~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~ 312 (562)
|++.++++.+|.||+.++.....-..+ .......++..++..+++.+..+.. .++|+||+||+..+++++.
T Consensus 85 q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~------~~ls~g~~Q~~~ad~ill~ 158 (318)
T 1nij_A 85 DKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQM------NQFTIAQSQVGYADRILLT 158 (318)
T ss_dssp HHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHH------HHCHHHHHHHHTCSEEEEE
T ss_pred hcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHH------hhchHHHHHHHhCCEEEEE
Confidence 777666677888877653110000000 0000000111122233443333332 2599999999998888889
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCCh
Q 008534 313 NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSS 357 (562)
Q Consensus 313 ~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~ 357 (562)
+|+++ ||| ..+.+.|+++. .+.||++++|++.+
T Consensus 159 k~dl~--de~---------~~l~~~l~~l~-~~~~ii~~sh~~~~ 191 (318)
T 1nij_A 159 KTDVA--GEA---------EKLHERLARIN-ARAPVYTVTHGDID 191 (318)
T ss_dssp CTTTC--SCT---------HHHHHHHHHHC-SSSCEEECCSSCCC
T ss_pred CcccC--CHH---------HHHHHHHHHhC-CCCeEEEecccCCC
Confidence 99887 888 67888888875 58999999998643
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=99.47 E-value=1.7e-15 Score=164.31 Aligned_cols=153 Identities=14% Similarity=0.141 Sum_probs=104.2
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh--------h--ccCcEEEEccCCCCCC
Q 008534 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--------S--LKSKIGFVTQDDVLFP 242 (562)
Q Consensus 173 L~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--------~--~~~~igyV~Q~~~l~~ 242 (562)
-+++||++++|++++|+||||||||||+++|+|.+. +.+|+|.++|.+..+ . .++.|+||+|+..+++
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~--~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p 360 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFE--QQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADS 360 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHH--HTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCH
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhh--hcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCH
Confidence 478999999999999999999999999999999653 357999998776532 1 2567999999988888
Q ss_pred CCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHh-hCC-CEEEEe
Q 008534 243 HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEII-INP-SLLFLD 320 (562)
Q Consensus 243 ~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl-~~P-~iLlLD 320 (562)
.++|++|+.++...... . -+++..|+.+... .+-.--+|++.+++++. ..| .+||..
T Consensus 361 ~~tV~e~l~~a~~~~~D----------v--VLIDTaGrl~~~~---------~lm~EL~kiv~iar~l~~~~P~evLLvL 419 (503)
T 2yhs_A 361 ASVIFDAIQAAKARNID----------V--LIADTAGRLQNKS---------HLMEELKKIVRVMKKLDVEAPHEVMLTI 419 (503)
T ss_dssp HHHHHHHHHHHHHTTCS----------E--EEECCCCSCCCHH---------HHHHHHHHHHHHHHTTCTTCSSEEEEEE
T ss_pred HHHHHHHHHHHHhcCCC----------E--EEEeCCCccchhh---------hHHHHHHHHHHHHHHhccCCCCeeEEEe
Confidence 88999999987432110 0 0112222221111 11122357888888774 446 456555
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHH-CCcEEEEEecC
Q 008534 321 EPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQ 354 (562)
Q Consensus 321 EPTsgLD~~~~~~i~~~L~~l~~-~g~Tvii~tH~ 354 (562)
+||+|.|.. +.++.+.+ -+.|.|++||-
T Consensus 420 DattGq~al------~~ak~f~~~~~itgvIlTKL 448 (503)
T 2yhs_A 420 DASTGQNAV------SQAKLFHEAVGLTGITLTKL 448 (503)
T ss_dssp EGGGTHHHH------HHHHHHHHHTCCSEEEEECG
T ss_pred cCcccHHHH------HHHHHHHhhcCCCEEEEEcC
Confidence 588886554 23344433 48899999993
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=99.47 E-value=1.5e-13 Score=144.78 Aligned_cols=77 Identities=26% Similarity=0.383 Sum_probs=67.8
Q ss_pred cccCCCChhHHHHH------HHHHHHhhC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcC
Q 008534 291 SFVRGVSGGERKRV------CIGNEIIIN-PSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKF 363 (562)
Q Consensus 291 ~~~~~LSGGqrqRv------~IAraLl~~-P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~ 363 (562)
..+..|||||+||+ ++|++|+.+ |++|||||||+|||+..+..+.+.|+++. .+.+||++||++. +...|
T Consensus 276 ~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~th~~~--~~~~~ 352 (371)
T 3auy_A 276 LTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVK-SIPQMIIITHHRE--LEDVA 352 (371)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCC-SCSEEEEEESCGG--GGGGC
T ss_pred cchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhc-cCCeEEEEEChHH--HHhhC
Confidence 34568999999988 567899999 99999999999999999999999999874 3569999999974 56889
Q ss_pred CEEEEEc
Q 008534 364 DKLILLG 370 (562)
Q Consensus 364 D~i~vL~ 370 (562)
|++++|+
T Consensus 353 d~~~~l~ 359 (371)
T 3auy_A 353 DVIINVK 359 (371)
T ss_dssp SEEEEEE
T ss_pred CEEEEEE
Confidence 9999997
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.47 E-value=6.6e-14 Score=136.85 Aligned_cols=158 Identities=20% Similarity=0.321 Sum_probs=88.0
Q ss_pred eeeceE-EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC-----CccEEEECCEeCChhccCcEEEEccCCCCCCCCC
Q 008534 172 ILNGIT-GSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPT-----VGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLT 245 (562)
Q Consensus 172 iL~~vs-~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~-----~~G~I~i~G~~~~~~~~~~igyV~Q~~~l~~~lT 245 (562)
.|+.+- .-+++|++++|+||||||||||++.|++....++ ..|.+++++.+. + .
T Consensus 12 ~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~----------------~----~ 71 (243)
T 1n0w_A 12 ELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGT----------------F----R 71 (243)
T ss_dssp HHHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSC----------------C----C
T ss_pred HHHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCC----------------c----C
Confidence 444443 5699999999999999999999999998422122 245666655431 0 0
Q ss_pred HHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHH-HHHHHHHh--hCCCEEEEeCC
Q 008534 246 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR-VCIGNEII--INPSLLFLDEP 322 (562)
Q Consensus 246 V~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqR-v~IAraLl--~~P~iLlLDEP 322 (562)
..+-........ ...+ ++++.+.+ ....+..+... +.-+.+++ .+|+++++|||
T Consensus 72 ~~~~~~~~~~~g----~~~~-------~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~ 128 (243)
T 1n0w_A 72 PERLLAVAERYG----LSGS-------DVLDNVAY------------ARAFNTDHQTQLLYQASAMMVESRYALLIVDSA 128 (243)
T ss_dssp HHHHHHHHHHTT----CCHH-------HHHHTEEE------------EECCSHHHHHHHHHHHHHHHHHSCEEEEEEETS
T ss_pred HHHHHHHHHHcC----CCHH-------HHhhCeEE------------EecCCHHHHHHHHHHHHHHHhcCCceEEEEeCc
Confidence 110000000000 0000 11111100 12244444332 23333444 48999999999
Q ss_pred CCCCCHH-------H-----HHHHHHHHHHHHHC-CcEEEEEecCCChH------------------HHhcCCEEEEEcC
Q 008534 323 TSGLDST-------T-----ALRIVQMLQDIAEA-GKTVVTTIHQPSSR------------------LFHKFDKLILLGK 371 (562)
Q Consensus 323 TsgLD~~-------~-----~~~i~~~L~~l~~~-g~Tvii~tH~~~~~------------------i~~~~D~i~vL~~ 371 (562)
++.+|+. . ...++..|++++++ |.|||+++|..... +...||.+++|+.
T Consensus 129 ~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~ 208 (243)
T 1n0w_A 129 TALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRK 208 (243)
T ss_dssp SGGGC-------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------------------------CCTTCEEEEEEE
T ss_pred hHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEE
Confidence 9999985 3 34566667776654 99999999964321 2227899999986
Q ss_pred C
Q 008534 372 G 372 (562)
Q Consensus 372 G 372 (562)
|
T Consensus 209 ~ 209 (243)
T 1n0w_A 209 G 209 (243)
T ss_dssp C
T ss_pred c
Confidence 5
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.9e-16 Score=149.72 Aligned_cols=136 Identities=20% Similarity=0.244 Sum_probs=87.7
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCCCCC--CccEEEECCEeCC-------hhcc-CcEE----EEccCCCCCCCCCHHHH
Q 008534 184 EVLALMGPSGSGKTTLLNLLSGRLMEPT--VGGSITYNDHPYS-------KSLK-SKIG----FVTQDDVLFPHLTVKET 249 (562)
Q Consensus 184 e~~alvGpsGsGKSTLl~~L~G~l~~~~--~~G~I~i~G~~~~-------~~~~-~~ig----yV~Q~~~l~~~lTV~en 249 (562)
++++|+|+||||||||+++|+|.+. +. ..|.|.+||.++. ..+| +.+| +++|++.+|- ++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~-~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~i----~~- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILR-ERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAFI----RR- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHH-HTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEEE----EE-
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh-hcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEEE----ec-
Confidence 5899999999999999999998543 22 2699999998742 2344 3567 8899877661 10
Q ss_pred HHHHHhhCCCCCccHHHHHHHHHHHHHH-cCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCEE-------EEeC
Q 008534 250 LTYAALLRLPNTLTKQQKEKRAIDVINE-LGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLL-------FLDE 321 (562)
Q Consensus 250 l~~~~~~~~~~~~~~~~~~~~v~~~l~~-lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iL-------lLDE 321 (562)
. ..+ ....+.++++. + + .+|+.++. +||||||||++||||++.+|++. +-|.
T Consensus 77 ---------~---~~~-~~a~l~~~i~~~l--~-g~dt~i~E----glSgGq~qri~lARall~~p~i~~~~~~a~~~~~ 136 (171)
T 2f1r_A 77 ---------V---SEE-EGNDLDWIYERYL--S-DYDLVITE----GFSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDE 136 (171)
T ss_dssp ---------C---CHH-HHTCHHHHHHHHT--T-TCSEEEEE----SCGGGCCCEEEECSSGGGGGGGCSSCEEEEECSS
T ss_pred ---------C---Chh-hhhCHHHHHHhhC--C-CCCEEEEC----CcCCCCCcEEEEEecccCCCccCccceEEEEecC
Confidence 0 011 12245666665 4 3 57888874 59999999999999999999873 2244
Q ss_pred CCCC---CCHHHHHHHHHHHHHHHHCC
Q 008534 322 PTSG---LDSTTALRIVQMLQDIAEAG 345 (562)
Q Consensus 322 PTsg---LD~~~~~~i~~~L~~l~~~g 345 (562)
|..+ +|......+.+.+.+...+|
T Consensus 137 ~~~~~~~f~~~~~~~~a~~i~~~~~~~ 163 (171)
T 2f1r_A 137 RVDGHKWFRRDEVERIAEFILSLLREG 163 (171)
T ss_dssp CCSSSCEECTTCHHHHHHHHHHHHTC-
T ss_pred CcccCcccCcccHHHHHHHHHHHHhcc
Confidence 4322 33444566777776655554
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=99.46 E-value=3.5e-14 Score=148.90 Aligned_cols=123 Identities=20% Similarity=0.216 Sum_probs=86.7
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEEC-CEeCChhccCcEEEEccCCCCCCCCCHHHHH
Q 008534 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYN-DHPYSKSLKSKIGFVTQDDVLFPHLTVKETL 250 (562)
Q Consensus 172 iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~-G~~~~~~~~~~igyV~Q~~~l~~~lTV~enl 250 (562)
-++++++. .+|++++|+||||||||||+|+|+|.... +..|+|.++ |.+.....+..+++++|+..+++..+|+|+
T Consensus 205 gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~-~~~G~I~~~~G~g~~tt~~~~i~~v~q~~~l~dtpgv~e~- 281 (358)
T 2rcn_A 205 GLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNE-ILTNDVSNVSGLGQHTTTAARLYHFPHGGDVIDSPGVREF- 281 (358)
T ss_dssp THHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSC-CCCC-------------CCCEEEECTTSCEEEECHHHHTC-
T ss_pred CHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccc-cccCCccccCCCCccceEEEEEEEECCCCEecCcccHHHh-
Confidence 46677664 48999999999999999999999995421 447999987 765433445679999999999988899884
Q ss_pred HHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHH
Q 008534 251 TYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEI 310 (562)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraL 310 (562)
+ + ..++.++....+.++++.+++.+..+.. ..++| ||+||++||+++
T Consensus 282 --~----l-~~l~~~e~~~~~~e~l~~~gl~~f~~~~-----~~~lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 282 --G----L-WHLEPEQITQGFVEFHDYLGHCKYRDCK-----HDADP-GCAIREAVENGA 328 (358)
T ss_dssp --C----C-CCCCHHHHHHTSGGGGGGTTCSSSTTCC-----SSSCT-TCHHHHHHHHTS
T ss_pred --h----h-cCCCHHHHHHHHHHHHHHcCCchhcCCC-----cccCC-HHHHHHHHHhcC
Confidence 1 1 1244555566778888889987766654 46899 999999999875
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=99.45 E-value=9.7e-15 Score=151.71 Aligned_cols=142 Identities=15% Similarity=0.125 Sum_probs=97.8
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh--------hcc--CcEEEEccCCCCCCCCCHHHH
Q 008534 180 VNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--------SLK--SKIGFVTQDDVLFPHLTVKET 249 (562)
Q Consensus 180 i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--------~~~--~~igyV~Q~~~l~~~lTV~en 249 (562)
.++|++++|+||||||||||+++|+|.+. +.+|+|.++|.++.+ .++ ..+.|++|+..++|.++|+||
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~--~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~ 203 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWLK--NHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDA 203 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHHH--HTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHH--hcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHH
Confidence 36899999999999999999999999653 458999999998742 122 346699999999999999999
Q ss_pred HHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 008534 250 LTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDST 329 (562)
Q Consensus 250 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~ 329 (562)
+.++...... . -+++..|+.+..+. ....|| .|++++..++.+++||.+|.
T Consensus 204 l~~~~~~~~d-~-----------vliDtaG~~~~~~~-----l~~eL~-------~i~ral~~de~llvLDa~t~----- 254 (328)
T 3e70_C 204 IQHAKARGID-V-----------VLIDTAGRSETNRN-----LMDEMK-------KIARVTKPNLVIFVGDALAG----- 254 (328)
T ss_dssp HHHHHHHTCS-E-----------EEEEECCSCCTTTC-----HHHHHH-------HHHHHHCCSEEEEEEEGGGT-----
T ss_pred HHHHHhccch-h-----------hHHhhccchhHHHH-----HHHHHH-------HHHHHhcCCCCEEEEecHHH-----
Confidence 9876421100 0 01112222211111 112233 48899998888889985554
Q ss_pred HHHHHHHHHHHHHH-CCcEEEEEecC
Q 008534 330 TALRIVQMLQDIAE-AGKTVVTTIHQ 354 (562)
Q Consensus 330 ~~~~i~~~L~~l~~-~g~Tvii~tH~ 354 (562)
.++++.++.+.+ .+.|+|++||.
T Consensus 255 --~~~~~~~~~~~~~~~it~iilTKl 278 (328)
T 3e70_C 255 --NAIVEQARQFNEAVKIDGIILTKL 278 (328)
T ss_dssp --THHHHHHHHHHHHSCCCEEEEECG
T ss_pred --HHHHHHHHHHHHhcCCCEEEEeCc
Confidence 355556666653 48999999995
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=99.43 E-value=5.3e-15 Score=138.02 Aligned_cols=78 Identities=18% Similarity=0.129 Sum_probs=66.3
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhcc-CcEEEEccCCCCCCCCCHH
Q 008534 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK-SKIGFVTQDDVLFPHLTVK 247 (562)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~-~~igyV~Q~~~l~~~lTV~ 247 (562)
.+.++++|||+|++|++++|+||||||||||+|+|+|.+ | .+|+|.++|.++..... .+ |++|++.+| .+||.
T Consensus 19 ~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l--~-~~G~V~~~g~~i~~~~~~~~--~~~q~~~l~-~ltv~ 92 (158)
T 1htw_A 19 KKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI--G-HQGNVKSPTYTLVEEYNIAG--KMIYHFDLY-RLADP 92 (158)
T ss_dssp HHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT--T-CCSCCCCCTTTCEEEEEETT--EEEEEEECT-TCSCT
T ss_pred HHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC--C-CCCeEEECCEeeeeeccCCC--cceeccccc-cCCcH
Confidence 457999999999999999999999999999999999965 3 47999999988743221 22 899998888 89999
Q ss_pred HHHHH
Q 008534 248 ETLTY 252 (562)
Q Consensus 248 enl~~ 252 (562)
||+.+
T Consensus 93 e~l~~ 97 (158)
T 1htw_A 93 EELEF 97 (158)
T ss_dssp THHHH
T ss_pred HHHHH
Confidence 99965
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=99.41 E-value=1e-14 Score=149.12 Aligned_cols=127 Identities=21% Similarity=0.254 Sum_probs=87.8
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHHHHHHHHh----h
Q 008534 181 NPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAAL----L 256 (562)
Q Consensus 181 ~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~~~igyV~Q~~~l~~~lTV~enl~~~~~----~ 256 (562)
+++.+++|+||+|||||||.+.|++.+. + .| . . ++.+.+|+||+.+++. ++++|+.++.. .
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~--~-~g------~----~-~~~~~iv~~D~f~~~~-~~~~~l~~~~~~~~l~ 93 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLM--E-KY------G----G-EKSIGYASIDDFYLTH-EDQLKLNEQFKNNKLL 93 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHH--H-HH------G----G-GSCEEEEEGGGGBCCH-HHHHHHHHHTTTCGGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhh--h-cC------C----C-CceEEEeccccccCCh-HHHHHHhccccccchh
Confidence 4688999999999999999999998542 1 22 0 1 3456677999999975 99999988631 1
Q ss_pred C---CCCCccHHHHHHHHHHHHHHcCCCcccccc-----ccCcccCCCChhHHHHHHHH--HHHhhCCCEEEEeCCCCCC
Q 008534 257 R---LPNTLTKQQKEKRAIDVINELGLERCQDTM-----IGGSFVRGVSGGERKRVCIG--NEIIINPSLLFLDEPTSGL 326 (562)
Q Consensus 257 ~---~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~-----vg~~~~~~LSGGqrqRv~IA--raLl~~P~iLlLDEPTsgL 326 (562)
. .|... ..+.+.+.++.+.. ..+|. .-..+...+||||+||+++| +++ +|+|||+||||+++
T Consensus 94 ~~~g~p~a~----d~~~l~~~l~~l~~--g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~l 165 (290)
T 1odf_A 94 QGRGLPGTH----DMKLLQEVLNTIFN--NNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGF 165 (290)
T ss_dssp SSSCSTTSB----CHHHHHHHHHHHTC--------CCEEEECCEETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTC
T ss_pred hhccCcchh----HHHHHHHHHHHhhc--cCccccCcceeeccCccccCCccccccccccceEc--CCCEEEEeCccccC
Confidence 1 12222 23345566666632 22211 01234468999999999997 555 99999999999999
Q ss_pred CHHH
Q 008534 327 DSTT 330 (562)
Q Consensus 327 D~~~ 330 (562)
|+..
T Consensus 166 d~~~ 169 (290)
T 1odf_A 166 NPIL 169 (290)
T ss_dssp CCCC
T ss_pred Cccc
Confidence 9863
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.39 E-value=5.9e-13 Score=142.82 Aligned_cols=75 Identities=21% Similarity=0.279 Sum_probs=67.9
Q ss_pred CCCChhHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEE
Q 008534 294 RGVSGGERKRVCIGNEII----INPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL 369 (562)
Q Consensus 294 ~~LSGGqrqRv~IAraLl----~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL 369 (562)
..||||||||++||++|+ .+|++|||||||++||+..+..+.+.|+++.+.+.++|++||++ .....||++++|
T Consensus 332 ~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~--~~~~~~d~~~~~ 409 (430)
T 1w1w_A 332 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKN--TMFEKSDALVGV 409 (430)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCH--HHHTTCSEEEEE
T ss_pred ccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCH--HHHHhCCEEEEE
Confidence 459999999999999999 57999999999999999999999999999865578999999994 356789999998
Q ss_pred c
Q 008534 370 G 370 (562)
Q Consensus 370 ~ 370 (562)
.
T Consensus 410 ~ 410 (430)
T 1w1w_A 410 Y 410 (430)
T ss_dssp E
T ss_pred E
Confidence 6
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=1.3e-15 Score=158.95 Aligned_cols=175 Identities=13% Similarity=0.171 Sum_probs=114.0
Q ss_pred EEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh----
Q 008534 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (562)
Q Consensus 150 l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~---- 225 (562)
|+++|+++.| ..+.+|+++|+++++|++++|+||||||||||+++|+|.+. +.+|+|.+.|.++..
T Consensus 30 ie~~~~~~~~--------~~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~--~~~g~v~i~~~d~~~~~~~ 99 (337)
T 2qm8_A 30 AESRRADHRA--------AVRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLT--AAGHKVAVLAVDPSSTRTG 99 (337)
T ss_dssp HTCSSHHHHH--------HHHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHH--HTTCCEEEEEECGGGGSSC
T ss_pred HeeCCccccc--------ChHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhh--hCCCEEEEEEEcCcccccc
Confidence 5666666655 23579999999999999999999999999999999998543 458999999987632
Q ss_pred ----hccCcEEEEccCCCCCCCC------------CHHHHHHHHHhhCCC------CCc--------------------c
Q 008534 226 ----SLKSKIGFVTQDDVLFPHL------------TVKETLTYAALLRLP------NTL--------------------T 263 (562)
Q Consensus 226 ----~~~~~igyV~Q~~~l~~~l------------TV~enl~~~~~~~~~------~~~--------------------~ 263 (562)
..+++++|++|++.+|+.. +++|.+........+ .++ .
T Consensus 100 ~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~ 179 (337)
T 2qm8_A 100 GSILGDKTRMARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPG 179 (337)
T ss_dssp CCSSCCGGGSTTGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSC
T ss_pred cchHHHhhhheeeccCcccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCC
Confidence 2356799999999887532 133333111000000 000 0
Q ss_pred -HHHHH---HHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhh------CCCEEEEeCCCCCCCHHHHHH
Q 008534 264 -KQQKE---KRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIII------NPSLLFLDEPTSGLDSTTALR 333 (562)
Q Consensus 264 -~~~~~---~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~------~P~iLlLDEPTsgLD~~~~~~ 333 (562)
....+ ..+.+....+.+ +..|. .....+|+|++|++..+++++. +|++++ ||++|.....+
T Consensus 180 ~~~~~~~i~~~i~~~~~ivvl-NK~Dl----~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~ 250 (337)
T 2qm8_A 180 AGDELQGIKKGIFELADMIAV-NKADD----GDGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDS 250 (337)
T ss_dssp C------CCTTHHHHCSEEEE-ECCST----TCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHH
T ss_pred CcccHHHHHHHHhccccEEEE-Echhc----cCchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHH
Confidence 00000 001111111111 11111 0123579999999999999987 688887 99999999999
Q ss_pred HHHHHHHHHH
Q 008534 334 IVQMLQDIAE 343 (562)
Q Consensus 334 i~~~L~~l~~ 343 (562)
+++.|.++..
T Consensus 251 L~~~I~~~~~ 260 (337)
T 2qm8_A 251 LWSRIEDHRS 260 (337)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988653
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=2.5e-13 Score=127.71 Aligned_cols=49 Identities=20% Similarity=0.193 Sum_probs=43.1
Q ss_pred HhhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChH
Q 008534 310 IIINPSLLFLDEPTS-GLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSR 358 (562)
Q Consensus 310 Ll~~P~iLlLDEPTs-gLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~ 358 (562)
.+.+|++||||||++ ++|+..+..+.+.+....++|+++|++||.+..+
T Consensus 97 ~~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~~~ 146 (180)
T 3ec2_A 97 TVLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSLQR 146 (180)
T ss_dssp HHHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCSCC
T ss_pred HhcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCChhH
Confidence 355999999999996 9999999999999998877899999999997653
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=99.35 E-value=5.3e-13 Score=123.00 Aligned_cols=98 Identities=14% Similarity=0.313 Sum_probs=71.5
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHHHH
Q 008534 171 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETL 250 (562)
Q Consensus 171 ~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~~~igyV~Q~~~l~~~lTV~enl 250 (562)
.+|+++ +|+.++|+||||+|||||+++|++.+. + .| ..+.|+...+... .
T Consensus 29 ~~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~--~-~g--------------~~~~~~~~~~~~~-~------- 78 (149)
T 2kjq_A 29 YVLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQAL--E-AG--------------KNAAYIDAASMPL-T------- 78 (149)
T ss_dssp HHCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHH--T-TT--------------CCEEEEETTTSCC-C-------
T ss_pred HHHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHH--h-cC--------------CcEEEEcHHHhhH-H-------
Confidence 467777 899999999999999999999998543 2 35 0133443322110 0
Q ss_pred HHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 008534 251 TYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTT 330 (562)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~ 330 (562)
+++.+|++|++|||++ +|...
T Consensus 79 ----------------------------------------------------------~~~~~~~lLilDE~~~-~~~~~ 99 (149)
T 2kjq_A 79 ----------------------------------------------------------DAAFEAEYLAVDQVEK-LGNEE 99 (149)
T ss_dssp ----------------------------------------------------------GGGGGCSEEEEESTTC-CCSHH
T ss_pred ----------------------------------------------------------HHHhCCCEEEEeCccc-cChHH
Confidence 1245799999999998 66555
Q ss_pred HHHHHHHHHHHHHCCcE-EEEEecCCCh
Q 008534 331 ALRIVQMLQDIAEAGKT-VVTTIHQPSS 357 (562)
Q Consensus 331 ~~~i~~~L~~l~~~g~T-vii~tH~~~~ 357 (562)
+..+.+.+..+.++|++ +|+++|.+..
T Consensus 100 ~~~l~~li~~~~~~g~~~iiits~~~p~ 127 (149)
T 2kjq_A 100 QALLFSIFNRFRNSGKGFLLLGSEYTPQ 127 (149)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEEESSCTT
T ss_pred HHHHHHHHHHHHHcCCcEEEEECCCCHH
Confidence 88899999998877888 8888886543
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=7.1e-16 Score=165.20 Aligned_cols=137 Identities=18% Similarity=0.215 Sum_probs=93.7
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh--------hccCcEEEEc-----
Q 008534 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--------SLKSKIGFVT----- 235 (562)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--------~~~~~igyV~----- 235 (562)
...+|+++ + .++|++++|+|||||||||||++|+|.+. +.+|.|.+.|.++.. ..++.+++++
T Consensus 155 ~~~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~--~~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr 230 (418)
T 1p9r_A 155 NHDNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELN--SSERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLR 230 (418)
T ss_dssp HHHHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHC--CTTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHH
T ss_pred HHHHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcC--CCCCEEEEecccchhccCCcceEEEccccCcCHHHHHH
Confidence 34578888 5 38999999999999999999999999653 347999999887631 1234456655
Q ss_pred ----cCCCC--CCC----CCHHHHHHHHHhhCCC-CCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHH
Q 008534 236 ----QDDVL--FPH----LTVKETLTYAALLRLP-NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (562)
Q Consensus 236 ----Q~~~l--~~~----lTV~enl~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 304 (562)
|+|.+ ++. .|+.+++.++...... ..+...... .+.+.+..+++.+.. .+..|||||+||
T Consensus 231 ~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~-~~i~rL~~lgl~~~~-------~~~~LSgg~~QR- 301 (418)
T 1p9r_A 231 AILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAV-GAVTRLRDMGIEPFL-------ISSSLLGVLAQR- 301 (418)
T ss_dssp HHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSH-HHHHHHHHHTCCHHH-------HHHHEEEEEEEE-
T ss_pred HHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHH-HHHHHHHHcCCcHHH-------HHHHHHHHHHHH-
Confidence 88765 333 5899999876421100 000000011 122346677886542 235799999999
Q ss_pred HHHHHHhhCCCEEEE
Q 008534 305 CIGNEIIINPSLLFL 319 (562)
Q Consensus 305 ~IAraLl~~P~iLlL 319 (562)
|||+|+.+|+++.-
T Consensus 302 -LaraL~~~p~~~~~ 315 (418)
T 1p9r_A 302 -LVRTLCPDCKEPYE 315 (418)
T ss_dssp -EEEEECTTTCEEEE
T ss_pred -hhhhhcCCCCccCC
Confidence 99999999998763
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=99.33 E-value=3.1e-14 Score=152.31 Aligned_cols=168 Identities=15% Similarity=0.161 Sum_probs=97.0
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHHHHHH
Q 008534 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTY 252 (562)
Q Consensus 173 L~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~~~igyV~Q~~~l~~~lTV~enl~~ 252 (562)
-++++++++.|+.++|+|+|||||||||++|+|.. + .+.+.+.+ .+...+++|.+++. ..+++.|+.-+
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~--~------~i~~~~ft-Tl~p~~G~V~~~~~--~~~~l~DtpGl 215 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAH--P------KIAPYPFT-TLSPNLGVVEVSEE--ERFTLADIPGI 215 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSC--C------EECCCTTC-SSCCEEEEEECSSS--CEEEEEECCCC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCC--c------cccCcccc-eecceeeEEEecCc--ceEEEEecccc
Confidence 48999999999999999999999999999999842 1 23333332 12234566665430 01111111110
Q ss_pred HHhhCCCCCccHHHH--HHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 008534 253 AALLRLPNTLTKQQK--EKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTT 330 (562)
Q Consensus 253 ~~~~~~~~~~~~~~~--~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~ 330 (562)
.........+..... .+++..++..+++. ...+..||+|++|++.+|++|+.+|.||++ +.+|...
T Consensus 216 i~~a~~~~~L~~~fl~~~era~~lL~vvDls--------~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~ 283 (416)
T 1udx_A 216 IEGASEGKGLGLEFLRHIARTRVLLYVLDAA--------DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLE 283 (416)
T ss_dssp CCCGGGSCCSCHHHHHHHTSSSEEEEEEETT--------SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSC
T ss_pred ccchhhhhhhhHHHHHHHHHHHhhhEEeCCc--------cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhh
Confidence 000000001111100 01111222223332 123457999999999999999999999999 9999987
Q ss_pred HHHHHHHHHHHH-HCCcEEEEEecCCChHHHhcCC
Q 008534 331 ALRIVQMLQDIA-EAGKTVVTTIHQPSSRLFHKFD 364 (562)
Q Consensus 331 ~~~i~~~L~~l~-~~g~Tvii~tH~~~~~i~~~~D 364 (562)
+ ..++.+++.. +.+.++|++|..-...+.++++
T Consensus 284 ~-~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~ 317 (416)
T 1udx_A 284 E-EAVKALADALAREGLAVLPVSALTGAGLPALKE 317 (416)
T ss_dssp H-HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHH
T ss_pred H-HHHHHHHHHHHhcCCeEEEEECCCccCHHHHHH
Confidence 6 5555555543 4477777665432333444433
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.32 E-value=9.9e-13 Score=136.15 Aligned_cols=183 Identities=14% Similarity=0.131 Sum_probs=94.6
Q ss_pred EEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh--hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCcc
Q 008534 186 LALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLT 263 (562)
Q Consensus 186 ~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~ 263 (562)
+.|.||||+|||||+++|++.+.. +..|.|.++|.+... ..+..+++++|.+.+.-..+ + .+ ...
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~-~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~-------~~~ 105 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFG-PGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPS--D---MG-------NND 105 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSC-TTCCC------------------CCEECSSEEEECCC----------------CC
T ss_pred EEEECCCCCCHHHHHHHHHHHHcC-CCCCeEEecceeecccccccceeeeecccceEEecHh--h---cC-------Ccc
Confidence 899999999999999999984443 347999999977542 22456889998775421111 0 00 001
Q ss_pred HHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 008534 264 KQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE 343 (562)
Q Consensus 264 ~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~ 343 (562)
.. .+.+.++.+......+.. . .||| +..+|+|+|+|||++ ||+.++..+++.|.+..
T Consensus 106 ~~----~~~~~i~~~~~~~~~~~~-----~-~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~- 162 (354)
T 1sxj_E 106 RI----VIQELLKEVAQMEQVDFQ-----D-SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYS- 162 (354)
T ss_dssp HH----HHHHHHHHHTTTTC-----------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHST-
T ss_pred hH----HHHHHHHHHHHhcccccc-----c-cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhc-
Confidence 11 122333333111111111 1 3566 788999999999999 99999999999998764
Q ss_pred CCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecC--hHHHHHHHHh----cCCCCCCCCChHHHHHHhhcCC
Q 008534 344 AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK--ASEAMAYFSS----IGCSPQIAMNPAEFLLDLANGN 411 (562)
Q Consensus 344 ~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~--~~el~~~f~~----~g~~~~~~~npad~~~~~~~~~ 411 (562)
.+.++|+++|++......+.+|+ ..+...+ .+++.++... .|...+. ....+++.....++
T Consensus 163 ~~~~~Il~t~~~~~l~~~l~sR~------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~l~~i~~~~~G~ 229 (354)
T 1sxj_E 163 KNIRLIMVCDSMSPIIAPIKSQC------LLIRCPAPSDSEISTILSDVVTNERIQLET-KDILKRIAQASNGN 229 (354)
T ss_dssp TTEEEEEEESCSCSSCHHHHTTS------EEEECCCCCHHHHHHHHHHHHHHHTCEECC-SHHHHHHHHHHTTC
T ss_pred CCCEEEEEeCCHHHHHHHHHhhc------eEEecCCcCHHHHHHHHHHHHHHcCCCCCc-HHHHHHHHHHcCCC
Confidence 37899999999764322233333 3444443 3455555442 3443220 12345565555554
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=99.30 E-value=1.8e-14 Score=139.18 Aligned_cols=165 Identities=19% Similarity=0.133 Sum_probs=95.1
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCC
Q 008534 180 VNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLP 259 (562)
Q Consensus 180 i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~ 259 (562)
.++|++++|+||||||||||+++|+|.+. +. | ..+++|++++..++. +..+++........+
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~--~~-g--------------~~~g~v~~d~~~~~~-~~~~~~~~~~~~~~~ 80 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALS--AQ-G--------------LPAEVVPMDGFHLDN-RLLEPRGLLPRKGAP 80 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHH--HT-T--------------CCEEEEESGGGBCCH-HHHGGGTCGGGTTSG
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHh--hc-C--------------CceEEEecCCCcCCH-HHHHHhcccccCCCC
Confidence 57999999999999999999999999653 21 3 236677776655532 333332110000111
Q ss_pred CCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHH-HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 008534 260 NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG-NEIIINPSLLFLDEPTSGLDSTTALRIVQML 338 (562)
Q Consensus 260 ~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA-raLl~~P~iLlLDEPTsgLD~~~~~~i~~~L 338 (562)
..... ..+.+++..+...+..+..+.+.. ..+|+||+||+++| ++++.++.++++|||.- ..+
T Consensus 81 ~~~~~----~~~~~~l~~l~~~~~i~~p~~d~~-~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~-----------~~l 144 (208)
T 3c8u_A 81 ETFDF----EGFQRLCHALKHQERVIYPLFDRA-RDIAIAGAAEVGPECRVAIIEGNYLLFDAPGW-----------RDL 144 (208)
T ss_dssp GGBCH----HHHHHHHHHHHHCSCEEEEEEETT-TTEEEEEEEEECTTCCEEEEEESSTTBCSTTG-----------GGG
T ss_pred chhhH----HHHHHHHHHHhcCCceecccCCcc-ccCCCCCceEEcCCCcEEEECCceeccCCchh-----------HHH
Confidence 11111 122333433322222233333322 35899999999998 88888888888888731 111
Q ss_pred HHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHHHHHH
Q 008534 339 QDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFS 388 (562)
Q Consensus 339 ~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~~~f~ 388 (562)
. ..--.+|++.+.....+.+.+.|. +..|+ +.+++.+.+.
T Consensus 145 ~---~~~d~~i~vd~~~~~~~~R~~~R~--~~~g~-----t~~~~~~~~~ 184 (208)
T 3c8u_A 145 T---AIWDVSIRLEVPMADLEARLVQRW--LDHGL-----NHDAAVARAQ 184 (208)
T ss_dssp G---GTCSEEEEECCCHHHHHHHHHHHH--HHTTC-----CHHHHHHHHH
T ss_pred H---HhcCEEEEEeCCHHHHHHHHHHHH--HhcCC-----CHHHHHHHHH
Confidence 1 112367778777655455666662 34454 6677766554
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.30 E-value=1.6e-13 Score=140.90 Aligned_cols=121 Identities=12% Similarity=0.140 Sum_probs=81.1
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEE---CCEeCChh---cc-CcEEEEccCCCCC-----CCCCHH
Q 008534 180 VNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITY---NDHPYSKS---LK-SKIGFVTQDDVLF-----PHLTVK 247 (562)
Q Consensus 180 i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i---~G~~~~~~---~~-~~igyV~Q~~~l~-----~~lTV~ 247 (562)
+.+|++++|+||||||||||+|+|+ ... +.+|+|.+ +|++++.. .+ +.+|||+|+|.+. +++|+
T Consensus 162 ~l~G~i~~l~G~sG~GKSTLln~l~-~~~--~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~- 237 (302)
T 2yv5_A 162 YLEGFICILAGPSGVGKSSILSRLT-GEE--LRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP- 237 (302)
T ss_dssp HTTTCEEEEECSTTSSHHHHHHHHH-SCC--CCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-
T ss_pred hccCcEEEEECCCCCCHHHHHHHHH-Hhh--CcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-
Confidence 4579999999999999999999999 653 45799999 99877532 22 3689999998553 67899
Q ss_pred HHH--HHHH----hhCCCCCccHHHHHHHHHHHHHHcCCCc-cccccccCcccCCCChhHHHHHHHHHH
Q 008534 248 ETL--TYAA----LLRLPNTLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVRGVSGGERKRVCIGNE 309 (562)
Q Consensus 248 enl--~~~~----~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~t~vg~~~~~~LSGGqrqRv~IAra 309 (562)
||+ .|+. .++.....+..+...++.++++.++|.+ .++. +++.|||.++|++.|||.
T Consensus 238 e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~-----~~~~ls~~~~R~~~~~~~ 301 (302)
T 2yv5_A 238 REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKS-----YLKIIKVYLEEIKELCRE 301 (302)
T ss_dssp GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHH-----HHHHTTCCCTTHHHHSSC
T ss_pred HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHH-----HHHHHHHHHHHHHHHhcc
Confidence 888 4541 0111110112223356888999999985 4554 356899999999999873
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=7.8e-12 Score=133.16 Aligned_cols=72 Identities=17% Similarity=0.193 Sum_probs=50.1
Q ss_pred HHHHHHHHHh--hCCCEEEEeCCCCCCCHHHH------------HHHHHHHHHHHHC-CcEEEEEecCCC----------
Q 008534 302 KRVCIGNEII--INPSLLFLDEPTSGLDSTTA------------LRIVQMLQDIAEA-GKTVVTTIHQPS---------- 356 (562)
Q Consensus 302 qRv~IAraLl--~~P~iLlLDEPTsgLD~~~~------------~~i~~~L~~l~~~-g~Tvii~tH~~~---------- 356 (562)
+.+..+++++ .+|+++++||||+.+|+... .++++.|++++++ |.|||+++|...
T Consensus 260 ~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g 339 (400)
T 3lda_A 260 RLLDAAAQMMSESRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNP 339 (400)
T ss_dssp HHHHHHHHHHHHSCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC------------
T ss_pred HHHHHHHHHHHhcCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccC
Confidence 3333344443 46999999999999997543 6788888888764 999999999821
Q ss_pred --------hHHHhcCCEEEEEcCCe
Q 008534 357 --------SRLFHKFDKLILLGKGS 373 (562)
Q Consensus 357 --------~~i~~~~D~i~vL~~G~ 373 (562)
..+...+|.+++|++++
T Consensus 340 ~~~~p~gg~~l~~~ad~vl~L~~~~ 364 (400)
T 3lda_A 340 DPKKPIGGNIMAYSSTTRLGFKKGK 364 (400)
T ss_dssp --------CHHHHHCSEEEEEEECS
T ss_pred CCccCCchhHHHHhcceEEEEEecC
Confidence 22456789999998764
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=99.27 E-value=5.3e-16 Score=149.36 Aligned_cols=156 Identities=20% Similarity=0.220 Sum_probs=87.6
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCC-----------CCCccEEEECCEeCC----hhccCcEEEEccCCCCCCCCC
Q 008534 181 NPGEVLALMGPSGSGKTTLLNLLSGRLME-----------PTVGGSITYNDHPYS----KSLKSKIGFVTQDDVLFPHLT 245 (562)
Q Consensus 181 ~~Ge~~alvGpsGsGKSTLl~~L~G~l~~-----------~~~~G~I~i~G~~~~----~~~~~~igyV~Q~~~l~~~lT 245 (562)
++|++++|+||||||||||+++|+|.+.. ++..|+ ++|.++. ..+++.+ .|+..++. .+
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~--~~g~~~~~~~~~~~~~~i---~~~~~l~~-~~ 75 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE--EDGKDYYFVTREMMQRDI---AAGDFIEH-AE 75 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHHH---HHTCEEEE-EE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc--cCCceEEEccHHHHHHHH---HcCCCEee-ee
Confidence 58999999999999999999999985320 123455 3555432 1233322 45555542 35
Q ss_pred HHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHH-HHhhCCCEEEEeCCCC
Q 008534 246 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGN-EIIINPSLLFLDEPTS 324 (562)
Q Consensus 246 V~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAr-aLl~~P~iLlLDEPTs 324 (562)
+.+|+ |+ .+.+ .+.++++. +.....+..+. ....+ .++ ++ +++ +++.+|++++|||+|+
T Consensus 76 ~~~n~-~g--------~~~~----~i~~~~~~-~~~~~~~~~~~--g~~~~--~~~-~~-~~~~~~l~~p~~~ilde~~~ 135 (198)
T 1lvg_A 76 FSGNL-YG--------TSKE----AVRAVQAM-NRICVLDVDLQ--GVRSI--KKT-DL-CPIYIFVQPPSLDVLEQRLR 135 (198)
T ss_dssp ETTEE-EE--------EEHH----HHHHHHHT-TCEEEEECCHH--HHHHH--TTS-SC-CCEEEEEECSCHHHHHHHHH
T ss_pred ecCcc-CC--------CCHH----HHHHHHHc-CCcEEEECCHH--HHHHH--Hhc-CC-CcEEEEEeCCCHHHHHHHHH
Confidence 55554 32 1222 23333332 10000010000 00000 000 22 455 6788888999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcC
Q 008534 325 GLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK 371 (562)
Q Consensus 325 gLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~ 371 (562)
++|..+...|.+.|.++.+. +.+.|. . ..||+|+++++
T Consensus 136 ~~d~~~e~~i~~~l~~~~~~----~~~a~~--~---~~~D~iivnd~ 173 (198)
T 1lvg_A 136 LRNTETEESLAKRLAAARTD----MESSKE--P---GLFDLVIINDD 173 (198)
T ss_dssp HHTCSCHHHHHHHHHHHHHH----TTGGGS--T---TTCSEEEECSS
T ss_pred hcCCCCHHHHHHHHHHHHHH----HHHhhc--c---CCceEEEECCC
Confidence 99999999999999887653 234562 1 56999988864
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=99.27 E-value=5.2e-15 Score=162.34 Aligned_cols=176 Identities=16% Similarity=0.115 Sum_probs=107.1
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEe-CChhccCcEEEEccCCCCCCCCCHHH
Q 008534 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP-YSKSLKSKIGFVTQDDVLFPHLTVKE 248 (562)
Q Consensus 170 ~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~-~~~~~~~~igyV~Q~~~l~~~lTV~e 248 (562)
..+++++++.+++|+.++|+||||||||||+++|+|.+. +..|.|+++|.+ +.......++++.|........|..+
T Consensus 247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~--~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~ 324 (511)
T 2oap_1 247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIP--PDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYD 324 (511)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSC--TTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHH
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCC--CCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHH
Confidence 458899999999999999999999999999999999653 558999998865 32122345667766544222345555
Q ss_pred HHHHHHhhCCCC-----CccHHHHHH------------------HHHHHHHHcCC-----Cc----cccccccCcccCCC
Q 008534 249 TLTYAALLRLPN-----TLTKQQKEK------------------RAIDVINELGL-----ER----CQDTMIGGSFVRGV 296 (562)
Q Consensus 249 nl~~~~~~~~~~-----~~~~~~~~~------------------~v~~~l~~lgL-----~~----~~~t~vg~~~~~~L 296 (562)
++....+.+ |. .+...+... .+.++++++.. +. ..+..+ .....+
T Consensus 325 ~l~~~LR~~-PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi--~~~~~~ 401 (511)
T 2oap_1 325 LLRAALRQR-PDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIAL--VQTMWV 401 (511)
T ss_dssp HHHTTGGGC-CSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEE--EEEEEE
T ss_pred HHHHhhccC-CCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEE--EEEEEE
Confidence 544332211 10 011000000 12233333322 11 011000 112357
Q ss_pred ChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEE--EecCCChHHHhcC
Q 008534 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVT--TIHQPSSRLFHKF 363 (562)
Q Consensus 297 SGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii--~tH~~~~~i~~~~ 363 (562)
||||+||++++. + | |+|||+.....+++.|.++...++|+++ +||++.. +...|
T Consensus 402 s~G~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~e-i~~~~ 457 (511)
T 2oap_1 402 RGNTRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLEK-MADFL 457 (511)
T ss_dssp SSSCEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHHH-HHHHH
T ss_pred eCCCceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHHH-HHHHc
Confidence 999999987651 2 7 9999998777777777766556788875 8888643 44444
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=99.15 E-value=1.9e-14 Score=152.83 Aligned_cols=169 Identities=14% Similarity=0.120 Sum_probs=117.1
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCCC----------CCCCccEEEECCEeCCh---h--ccCc---EEEEccCCCC
Q 008534 179 SVNPGEVLALMGPSGSGKTTLLNLLSGRLM----------EPTVGGSITYNDHPYSK---S--LKSK---IGFVTQDDVL 240 (562)
Q Consensus 179 ~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~----------~~~~~G~I~i~G~~~~~---~--~~~~---igyV~Q~~~l 240 (562)
.+++|..++|+|+||||||||+|+|+|... ..+..|.|.++|..+.. . .++. ..++.+.+-+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 457899999999999999999999999311 12457999998854321 0 1122 2477788888
Q ss_pred CCCCCHHHHH--HHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCC--CE
Q 008534 241 FPHLTVKETL--TYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINP--SL 316 (562)
Q Consensus 241 ~~~lTV~enl--~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P--~i 316 (562)
++..+..|++ .|...++. ++.++..++..+ +..+..++|+. +| ++
T Consensus 96 ~~~~s~~e~L~~~fl~~ir~------------~d~il~Vvd~~~-------d~~i~~v~~~~------------dP~~di 144 (392)
T 1ni3_A 96 TKGASTGVGLGNAFLSHVRA------------VDAIYQVVRAFD-------DAEIIHVEGDV------------DPIRDL 144 (392)
T ss_dssp CCCCCSSSSSCHHHHHHHTT------------CSEEEEEEECCC-------TTCSSCCSSSS------------CHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHH------------HHHHHHHHhccc-------cceeeeecccc------------Ccchhh
Confidence 8777776655 33322221 001111111111 12233467653 89 99
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHH-HHCCcEEEEEecCCChHHHhcCCEEE-EEcCC-eEEEecChH
Q 008534 317 LFLDEPTSGLDSTTALRIVQMLQDI-AEAGKTVVTTIHQPSSRLFHKFDKLI-LLGKG-SLLYFGKAS 381 (562)
Q Consensus 317 LlLDEPTsgLD~~~~~~i~~~L~~l-~~~g~Tvii~tH~~~~~i~~~~D~i~-vL~~G-~iv~~G~~~ 381 (562)
+++|||+.++|+......++.++.+ .+.|.|++ +|... .+..+||++. +|++| ++++.|+..
T Consensus 145 ~ildeel~~~D~~~~~k~~~~l~~~~~~~g~ti~--sh~~~-~~~~l~~~i~~~L~~G~~~~~~~~~~ 209 (392)
T 1ni3_A 145 SIIVDELLIKDAEFVEKHLEGLRKITSRGANTLE--MKAKK-EEQAIIEKVYQYLTETKQPIRKGDWS 209 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCSSS--HHHHH-HHHHHHHHHHHHHHTTCSCGGGSCCC
T ss_pred hhchhhhHHHHHHHHHHHHHHHHHHHHhcCCccc--cccHH-HHHHHHHHHHHHhccCCceeecCCCC
Confidence 9999999999999999999999988 66677764 99864 5778999999 99999 998887643
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.12 E-value=1.4e-14 Score=146.65 Aligned_cols=142 Identities=15% Similarity=0.175 Sum_probs=98.2
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh----hccCcEEEEccCC-CCCCC
Q 008534 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDD-VLFPH 243 (562)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~----~~~~~igyV~Q~~-~l~~~ 243 (562)
...+++++++.+++| ++|+||||||||||+++|+|... .|.|.++|.++.. ...+.+++++|.. ..+|.
T Consensus 32 ~~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~----~~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~ 105 (274)
T 2x8a_A 32 NPDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESG----LNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPC 105 (274)
T ss_dssp SHHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTT----CEEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSE
T ss_pred CHHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcC----CCEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCC
Confidence 346899999999999 99999999999999999999542 2789999987642 2245678888875 45666
Q ss_pred CCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEeCCC
Q 008534 244 LTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPT 323 (562)
Q Consensus 244 lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPT 323 (562)
+++.|++.+....+ ... .. . .+....++ ....|||||+||+.|++|+..+|++| |||+
T Consensus 106 i~~~Deid~~~~~r-------~~~--~~----~--~~~~~~~~-----~l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al 163 (274)
T 2x8a_A 106 VIFFDEVDALCPRR-------SDR--ET----G--ASVRVVNQ-----LLTEMDGLEARQQVFIMAATNRPDII--DPAI 163 (274)
T ss_dssp EEEEETCTTTCC------------------------CTTHHHH-----HHHHHHTCCSTTCEEEEEEESCGGGS--CHHH
T ss_pred eEeeehhhhhhccc-------CCC--cc----h--HHHHHHHH-----HHHhhhcccccCCEEEEeecCChhhC--CHhh
Confidence 77777776432111 000 00 0 01122222 33579999999999999999999985 9886
Q ss_pred C------------CCCHHHHHHHHHHH
Q 008534 324 S------------GLDSTTALRIVQML 338 (562)
Q Consensus 324 s------------gLD~~~~~~i~~~L 338 (562)
. -.|...+.+|++.+
T Consensus 164 ~r~gRfd~~i~~~~P~~~~r~~il~~~ 190 (274)
T 2x8a_A 164 LRPGRLDKTLFVGLPPPADRLAILKTI 190 (274)
T ss_dssp HSTTSSCEEEECCSCCHHHHHHHHHHH
T ss_pred cCcccCCeEEEeCCcCHHHHHHHHHHH
Confidence 4 23666666666543
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.11 E-value=2.8e-12 Score=131.44 Aligned_cols=106 Identities=15% Similarity=0.195 Sum_probs=68.5
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEE---CCEeCChh---c-cCcEEEEccCCC------------
Q 008534 179 SVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITY---NDHPYSKS---L-KSKIGFVTQDDV------------ 239 (562)
Q Consensus 179 ~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i---~G~~~~~~---~-~~~igyV~Q~~~------------ 239 (562)
++.+|++++|+||||||||||+|+|+|... +.+|+|.+ +|++++.. . .+.+|||+|+|.
T Consensus 165 ~~l~geiv~l~G~sG~GKSTll~~l~g~~~--~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~ 242 (301)
T 1u0l_A 165 EYLKGKISTMAGLSGVGKSSLLNAINPGLK--LRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPE 242 (301)
T ss_dssp HHHSSSEEEEECSTTSSHHHHHHHHSTTCC--CC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHH
T ss_pred HHhcCCeEEEECCCCCcHHHHHHHhccccc--ccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHH
Confidence 456799999999999999999999999543 45899999 89887531 1 236899999974
Q ss_pred ----CCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCC-ccccccccCcccCCCCh
Q 008534 240 ----LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVSG 298 (562)
Q Consensus 240 ----l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~~LSG 298 (562)
+||++|+ ||+.|+. +.. ..+...++.++++.++|+ +.++. +++.||+
T Consensus 243 ~~~~l~~~~~~-~n~~~~~-~~~-----~~e~~~~v~~~l~~~~L~~~~~~~-----~~~~lse 294 (301)
T 1u0l_A 243 ELKHYFKEFGD-KQCFFSD-CNH-----VDEPECGVKEAVENGEIAESRYEN-----YVKMFYE 294 (301)
T ss_dssp HHGGGSTTSSS-CCCSSTT-CCS-----SSCSSCHHHHHHHHTSSCHHHHHH-----HHHHHHH
T ss_pred HHHHHHHhccc-ccCcCCC-CcC-----CCCCCcHHHHHHHcCCCCHHHHHH-----HHHHHHH
Confidence 6889999 9998853 111 112234688899999995 44443 3455664
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=3.7e-13 Score=139.66 Aligned_cols=151 Identities=21% Similarity=0.222 Sum_probs=97.0
Q ss_pred ccceeeceEEEEeCC-------eEEEEECCCCCcHHHHHHHHHcCCCC--CCCccEEEECCEeCCh---hc-cCcEEEEc
Q 008534 169 EKDILNGITGSVNPG-------EVLALMGPSGSGKTTLLNLLSGRLME--PTVGGSITYNDHPYSK---SL-KSKIGFVT 235 (562)
Q Consensus 169 ~~~iL~~vs~~i~~G-------e~~alvGpsGsGKSTLl~~L~G~l~~--~~~~G~I~i~G~~~~~---~~-~~~igyV~ 235 (562)
...+++++++.+++| +.++|+||||+|||||+++|+|.+.. .+.+|.+..++.++.. .+ +..|.|+.
T Consensus 30 ~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~iD 109 (334)
T 1in4_A 30 QENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFID 109 (334)
T ss_dssp CHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEEE
T ss_pred cHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEEc
Confidence 346899999999887 89999999999999999999986421 1235666555544422 12 45699999
Q ss_pred cCCCCCCCCCHHHHHHHHHhhCCCCC-ccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCC
Q 008534 236 QDDVLFPHLTVKETLTYAALLRLPNT-LTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINP 314 (562)
Q Consensus 236 Q~~~l~~~lTV~enl~~~~~~~~~~~-~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P 314 (562)
|.+.+++ ++.|++..........- .........+...+..++|.. ..+. +..||+|+|||+.++
T Consensus 110 E~~~l~~--~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~-at~~-----~~~Ls~~l~sR~~l~------- 174 (334)
T 1in4_A 110 EIHRLNK--AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVG-ATTR-----SGLLSSPLRSRFGII------- 174 (334)
T ss_dssp TGGGCCH--HHHHHHHHHHHTSCCCC---------------CCCEEEE-EESC-----GGGSCHHHHTTCSEE-------
T ss_pred chhhcCH--HHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEE-ecCC-----cccCCHHHHHhcCce-------
Confidence 9888775 78888854432211000 001111223334444444433 3332 357999999998655
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 008534 315 SLLFLDEPTSGLDSTTALRIVQMLQDIAE 343 (562)
Q Consensus 315 ~iLlLDEPTsgLD~~~~~~i~~~L~~l~~ 343 (562)
.+||+.+..++.+.|++.++
T Consensus 175 ---------~~Ld~~~~~~l~~iL~~~~~ 194 (334)
T 1in4_A 175 ---------LELDFYTVKELKEIIKRAAS 194 (334)
T ss_dssp ---------EECCCCCHHHHHHHHHHHHH
T ss_pred ---------eeCCCCCHHHHHHHHHHHHH
Confidence 78888889999999998865
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.06 E-value=1.2e-11 Score=120.90 Aligned_cols=68 Identities=21% Similarity=0.228 Sum_probs=48.4
Q ss_pred HHHHHHHh--hCCCEEEEeCCCCCC--CHHHHHHHHHHHHHHH-HCCcEEEEEecCCChH-------HHhcCCEEEEEcC
Q 008534 304 VCIGNEII--INPSLLFLDEPTSGL--DSTTALRIVQMLQDIA-EAGKTVVTTIHQPSSR-------LFHKFDKLILLGK 371 (562)
Q Consensus 304 v~IAraLl--~~P~iLlLDEPTsgL--D~~~~~~i~~~L~~l~-~~g~Tvii~tH~~~~~-------i~~~~D~i~vL~~ 371 (562)
+..++.++ .+|+++++|+|++.+ |+....+++..|.+++ +.|.|||+++|..... +.+.||.|+.|+.
T Consensus 117 ~~~i~~~~~~~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 117 IEVLRQAIRDINAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HHHHHHHHHHHTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred HHHHHHHHHHhCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 33344444 589999999999988 6655566666666664 5589999999986531 4577899999964
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.03 E-value=1.5e-11 Score=126.59 Aligned_cols=118 Identities=16% Similarity=0.180 Sum_probs=67.4
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEE---CCEeCCh--hc-cCcEEEEccCCCCCC----CCCHH
Q 008534 178 GSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITY---NDHPYSK--SL-KSKIGFVTQDDVLFP----HLTVK 247 (562)
Q Consensus 178 ~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i---~G~~~~~--~~-~~~igyV~Q~~~l~~----~lTV~ 247 (562)
+++.+|++++|+||||+|||||+|+|+|... +..|+|.+ +|+.++. .+ +..+|||+|.|.+.+ .+|+
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~--~~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~- 244 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELG--LRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE- 244 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC---------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH-
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhccccc--ccccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH-
Confidence 4567899999999999999999999999543 45799998 8877643 22 222799999987655 6899
Q ss_pred HHHH--HHH------hhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHH
Q 008534 248 ETLT--YAA------LLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (562)
Q Consensus 248 enl~--~~~------~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqR 303 (562)
|||. |.. .|+........+...++.++++.++|.+..... ...++.|++||
T Consensus 245 e~l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r~~~-----y~~lls~~~~~ 303 (307)
T 1t9h_A 245 EELGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYDH-----YVEFMTEIKDR 303 (307)
T ss_dssp HHHGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHH-----HHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHHHHHH-----HHHHHHHHhhc
Confidence 8883 331 111111111112234688899999997633221 13577777763
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=99.01 E-value=1.6e-10 Score=118.76 Aligned_cols=113 Identities=17% Similarity=0.243 Sum_probs=78.8
Q ss_pred eEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHHHHHHHHh
Q 008534 176 ITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAAL 255 (562)
Q Consensus 176 vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~~~igyV~Q~~~l~~~lTV~enl~~~~~ 255 (562)
+++..++|++++|+|||||||||++..|++.+. +.+|+|.+.+.+..+. ...+.
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~--~~g~kV~lv~~D~~r~------------------~a~eq------ 150 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFV--DEGKSVVLAAADTFRA------------------AAIEQ------ 150 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHH--HTTCCEEEEEECTTCH------------------HHHHH------
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHH--hcCCEEEEEccccccH------------------HHHHH------
Confidence 455567899999999999999999999998653 3467777766553210 01111
Q ss_pred hCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHH---HHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 008534 256 LRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV---CIGNEIIINPSLLFLDEPTSGLDSTTAL 332 (562)
Q Consensus 256 ~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv---~IAraLl~~P~iLlLDEPTsgLD~~~~~ 332 (562)
+..+.+.++++. ....|||+.+++ +|++++..+|+++|+|||.. .....
T Consensus 151 ---------------L~~~~~~~gl~~----------~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~---~~~~~ 202 (306)
T 1vma_A 151 ---------------LKIWGERVGATV----------ISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR---LHTKK 202 (306)
T ss_dssp ---------------HHHHHHHHTCEE----------ECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC---CSCHH
T ss_pred ---------------HHHHHHHcCCcE----------EecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc---hhhHH
Confidence 222344455542 135789999999 99999999999999999974 33445
Q ss_pred HHHHHHHHHH
Q 008534 333 RIVQMLQDIA 342 (562)
Q Consensus 333 ~i~~~L~~l~ 342 (562)
.+++.|+++.
T Consensus 203 ~l~~eL~~l~ 212 (306)
T 1vma_A 203 NLMEELRKVH 212 (306)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666666654
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=1.7e-11 Score=125.85 Aligned_cols=97 Identities=10% Similarity=0.111 Sum_probs=78.7
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEE-------------------eCCeEEEEECCCCCcHHHHHHHHHcCCCC
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSV-------------------NPGEVLALMGPSGSGKTTLLNLLSGRLME 209 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i-------------------~~Ge~~alvGpsGsGKSTLl~~L~G~l~~ 209 (562)
.|+++||++.| .++++++++.+ ++|+++||+||||||||||+++|+|.+..
T Consensus 37 ~i~~~~v~~~y----------~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~ 106 (308)
T 1sq5_A 37 DLSLEEVAEIY----------LPLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSR 106 (308)
T ss_dssp TCCHHHHHHTH----------HHHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTT
T ss_pred ccchHhHHHHH----------HHHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 57888998766 25899999988 99999999999999999999999995431
Q ss_pred CCCccEEEE---CCEeCChhccCcEEEEccCCCCCCCCCHHHHHHHHHhh
Q 008534 210 PTVGGSITY---NDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALL 256 (562)
Q Consensus 210 ~~~~G~I~i---~G~~~~~~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~ 256 (562)
.+.+|+|.+ ||.......++.++++ |+..+++.+++.+|+.+...+
T Consensus 107 ~~~~G~i~vi~~d~~~~~~~~~~~~~~v-q~~~~~~~~~~~~~~~~~~~l 155 (308)
T 1sq5_A 107 WPEHRRVELITTDGFLHPNQVLKERGLM-KKKGFPESYDMHRLVKFVSDL 155 (308)
T ss_dssp STTCCCEEEEEGGGGBCCHHHHHHHTCT-TCTTSGGGBCHHHHHHHHHHH
T ss_pred CCCCCeEEEEecCCccCcHHHHHhCCEe-ecCCCCCCccHHHHHHHHHHH
Confidence 135799999 9887654445668888 877777889999999886544
|
| >2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... | Back alignment and structure |
|---|
Probab=98.94 E-value=1.3e-09 Score=114.06 Aligned_cols=155 Identities=21% Similarity=0.302 Sum_probs=91.0
Q ss_pred ceeeceE--EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHH
Q 008534 171 DILNGIT--GSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKE 248 (562)
Q Consensus 171 ~iL~~vs--~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~~~igyV~Q~~~l~~~lTV~e 248 (562)
+-|+.+- +-+++|+++.|.||||||||||+..++.... ..+| .+.|+.-+..+-+ .
T Consensus 47 ~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~--~~g~---------------~vlyi~~E~~~~~---~-- 104 (349)
T 2zr9_A 47 ISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQ--AAGG---------------IAAFIDAEHALDP---E-- 104 (349)
T ss_dssp HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHH--HTTC---------------CEEEEESSCCCCH---H--
T ss_pred HHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHH--hCCC---------------eEEEEECCCCcCH---H--
Confidence 3455443 3689999999999999999999888875322 1111 2445544421110 0
Q ss_pred HHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhC--CCEEEEeCCCCCC
Q 008534 249 TLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIIN--PSLLFLDEPTSGL 326 (562)
Q Consensus 249 nl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~--P~iLlLDEPTsgL 326 (562)
++ +.+|+... +-.+- ...+. .+-+.++++++.+ |+++++|||++.+
T Consensus 105 ---~a----------------------~~lG~~~~-~l~i~----~~~~~--e~~l~~~~~l~~~~~~~lIVIDsl~~l~ 152 (349)
T 2zr9_A 105 ---YA----------------------KKLGVDTD-SLLVS----QPDTG--EQALEIADMLVRSGALDIIVIDSVAALV 152 (349)
T ss_dssp ---HH----------------------HHTTCCGG-GCEEE----CCSSH--HHHHHHHHHHHTTTCCSEEEEECGGGCC
T ss_pred ---HH----------------------HHcCCCHH-HeEEe----cCCCH--HHHHHHHHHHHhcCCCCEEEEcChHhhc
Confidence 11 11222100 00010 11222 3446678888765 9999999999998
Q ss_pred ----------CH---HHHHHHHHHHHHH----HHCCcEEEEEecCCCh---------------HHHhcCCEEEEEcCCeE
Q 008534 327 ----------DS---TTALRIVQMLQDI----AEAGKTVVTTIHQPSS---------------RLFHKFDKLILLGKGSL 374 (562)
Q Consensus 327 ----------D~---~~~~~i~~~L~~l----~~~g~Tvii~tH~~~~---------------~i~~~~D~i~vL~~G~i 374 (562)
|+ ..++.+.+.++++ .+.|.|||+++|.... .+..+||.++.++.+++
T Consensus 153 ~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~~~p~~~~gg~~l~~~ad~~l~lrr~~~ 232 (349)
T 2zr9_A 153 PRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMFGSPETTTGGKALKFYASVRLDVRRIET 232 (349)
T ss_dssp CHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-----------CCSSHHHHHHHCSEEEEEEEEEE
T ss_pred chhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcccCCCcccCCchHhhhccceEEEEEEeee
Confidence 33 2223445555555 3458999999996431 24567999999988776
Q ss_pred EEecC
Q 008534 375 LYFGK 379 (562)
Q Consensus 375 v~~G~ 379 (562)
+..|+
T Consensus 233 ~k~g~ 237 (349)
T 2zr9_A 233 LKDGT 237 (349)
T ss_dssp ECSSS
T ss_pred eecCc
Confidence 65554
|
| >2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=3.7e-11 Score=131.38 Aligned_cols=166 Identities=16% Similarity=0.170 Sum_probs=98.6
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHHc-CCCCCCCccEEEECCEeCCh-hccCcEEEEccCCCCCCCC--CHHHHH
Q 008534 175 GITGSVNPGEVLALMGPSGSGKTTLLNLLSG-RLMEPTVGGSITYNDHPYSK-SLKSKIGFVTQDDVLFPHL--TVKETL 250 (562)
Q Consensus 175 ~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G-~l~~~~~~G~I~i~G~~~~~-~~~~~igyV~Q~~~l~~~l--TV~enl 250 (562)
.+++.+.++..++|.|++||||||+++.|.. .++. ...|++.+.+.|... .+ +....+|++ +|.++.
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~-~~p~~v~l~liDpK~~el--------~~~~~lPhl~~~Vvtd~ 229 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYK-AQPEDVRFIMIDPKMLEL--------SVYEGIPHLLTEVVTDM 229 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTT-CCTTTEEEEEECCSSSGG--------GGGTTCTTBSSSCBCSH
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHh-CCCceEEEEEECCchhhh--------hhhccCCcccceeecCH
Confidence 4677888999999999999999999998864 2222 224667666665432 11 111111221 222222
Q ss_pred HHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHH----------HHHHHHhhCCC-EEEE
Q 008534 251 TYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV----------CIGNEIIINPS-LLFL 319 (562)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv----------~IAraLl~~P~-iLlL 319 (562)
..+...- .....+.++| .+++...|+.+..+.. ......+||||+||. .+++++...|. ++++
T Consensus 230 ~~a~~~L---~~~~~EmerR-~~ll~~~Gv~~i~~yn--~~~~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvI 303 (512)
T 2ius_A 230 KDAANAL---RWCVNEMERR-YKLMSALGVRNLAGYN--EKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLV 303 (512)
T ss_dssp HHHHHHH---HHHHHHHHHH-HHHHHHTTCSSHHHHH--HHHHHHHHTTCCCBCTTC---------CCBCCCCCEEEEEE
T ss_pred HHHHHHH---HHHHHHHHHH-HHHHHHcCCccHHHHH--HHHHHHhhcCCcccccccccccchhccccccccCCcEEEEE
Confidence 2211100 0112344444 3678888876543210 001135789998763 35666777898 7899
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHH----CCcEEEEEecCCC
Q 008534 320 DEPTSGLDSTTALRIVQMLQDIAE----AGKTVVTTIHQPS 356 (562)
Q Consensus 320 DEPTsgLD~~~~~~i~~~L~~l~~----~g~Tvii~tH~~~ 356 (562)
||++.-+|.. ...+.+.|.++++ .|.++|++||+|+
T Consensus 304 DE~~~ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 304 DEFADLMMTV-GKKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp ETHHHHHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred eCHHHHHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 9999988843 3455666665543 2779999999987
|
| >2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A | Back alignment and structure |
|---|
Probab=98.94 E-value=2.7e-09 Score=115.20 Aligned_cols=181 Identities=12% Similarity=0.127 Sum_probs=109.5
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCcc-EEEECCEeCCh-hccCc-EEEEccCCCCCCCCC
Q 008534 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGG-SITYNDHPYSK-SLKSK-IGFVTQDDVLFPHLT 245 (562)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G-~I~i~G~~~~~-~~~~~-igyV~Q~~~l~~~lT 245 (562)
+.+.|+++.+-+++|+++.|.|++|+|||||+..|++... ...| .|.+-+...+. .+..+ ++... ...
T Consensus 189 G~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~--~~~g~~Vl~~s~E~s~~~l~~r~~~~~~-------~~~ 259 (454)
T 2r6a_A 189 GFTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVA--TKTNENVAIFSLEMSAQQLVMRMLCAEG-------NIN 259 (454)
T ss_dssp SCHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHH--HHSSCCEEEEESSSCHHHHHHHHHHHHH-------TCC
T ss_pred CcHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH--HhCCCcEEEEECCCCHHHHHHHHHHHHc-------CCC
Confidence 3457899988899999999999999999999999987432 1123 23332222211 11100 00000 000
Q ss_pred HHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHh--hCCCEEEEeCCC
Q 008534 246 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEII--INPSLLFLDEPT 323 (562)
Q Consensus 246 V~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl--~~P~iLlLDEPT 323 (562)
. +.+. . ..+...+ ..++.+.+..++..+.. +-+ ..++|.+|.+ +.++.++ .+|+++++|+++
T Consensus 260 ~-~~l~------~-g~l~~~~-~~~~~~a~~~l~~~~l~---i~d--~~~~s~~~i~--~~~~~l~~~~~~~livID~l~ 323 (454)
T 2r6a_A 260 A-QNLR------T-GKLTPED-WGKLTMAMGSLSNAGIY---IDD--TPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQ 323 (454)
T ss_dssp H-HHHH------T-SCCCHHH-HHHHHHHHHHHHSSCEE---EEC--CTTCCHHHHH--HHHHHHHTTTCCCEEEEECGG
T ss_pred H-HHHh------c-CCCCHHH-HHHHHHHHHHHhcCCEE---EEC--CCCCCHHHHH--HHHHHHHHHcCCCEEEEccHH
Confidence 0 0010 0 0122222 23445555555433221 111 2468999887 5677776 689999999999
Q ss_pred CCCCH--------HHHHHHHHHHHHHHHC-CcEEEEEec---------C--CC-------hHHHhcCCEEEEEcCCeE
Q 008534 324 SGLDS--------TTALRIVQMLQDIAEA-GKTVVTTIH---------Q--PS-------SRLFHKFDKLILLGKGSL 374 (562)
Q Consensus 324 sgLD~--------~~~~~i~~~L~~l~~~-g~Tvii~tH---------~--~~-------~~i~~~~D~i~vL~~G~i 374 (562)
...++ ....++.+.|+.++++ |.+||+++| + |. ..+...||.|++|+.++.
T Consensus 324 ~~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 324 LIQGSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp GSCCSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred HhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 97742 3346777888888754 899999999 2 32 136678999999987764
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=2.1e-09 Score=109.88 Aligned_cols=118 Identities=16% Similarity=0.094 Sum_probs=80.5
Q ss_pred eceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHHHHHHH
Q 008534 174 NGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYA 253 (562)
Q Consensus 174 ~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~~~igyV~Q~~~l~~~lTV~enl~~~ 253 (562)
++++++ +|++++|+|+||+||||++..|++.+. ..+|+|.+.+.+...... + +.+.
T Consensus 91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~--~~~~~v~l~~~d~~~~~~-----------------~-~ql~-- 146 (295)
T 1ls1_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYK--GKGRRPLLVAADTQRPAA-----------------R-EQLR-- 146 (295)
T ss_dssp CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHH--HTTCCEEEEECCSSCHHH-----------------H-HHHH--
T ss_pred ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHH--HcCCeEEEecCCcccHhH-----------------H-HHHH--
Confidence 678888 999999999999999999999998653 346888887765432100 0 0000
Q ss_pred HhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEeCC-CCCCCHHHHH
Q 008534 254 ALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEP-TSGLDSTTAL 332 (562)
Q Consensus 254 ~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEP-TsgLD~~~~~ 332 (562)
.+.+..+++-... + ....-.+.+|.+|++++..+++++|+||| +.++|.....
T Consensus 147 -------------------~~~~~~~l~~~~~---~----~~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~ 200 (295)
T 1ls1_A 147 -------------------LLGEKVGVPVLEV---M----DGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMG 200 (295)
T ss_dssp -------------------HHHHHHTCCEEEC---C----TTCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHH
T ss_pred -------------------HhcccCCeEEEEc---C----CCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHH
Confidence 1122334432110 0 01233455788999998899999999999 9999988777
Q ss_pred HHHHHHHHH
Q 008534 333 RIVQMLQDI 341 (562)
Q Consensus 333 ~i~~~L~~l 341 (562)
.+.+..+.+
T Consensus 201 ~l~~~~~~~ 209 (295)
T 1ls1_A 201 ELARLKEVL 209 (295)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHhhhc
Confidence 777766554
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.88 E-value=8.1e-11 Score=112.07 Aligned_cols=68 Identities=19% Similarity=0.365 Sum_probs=48.5
Q ss_pred EEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh----hccCcEEEEccCCCCCCCCCHHHHH
Q 008534 177 TGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHLTVKETL 250 (562)
Q Consensus 177 s~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~----~~~~~igyV~Q~~~l~~~lTV~enl 250 (562)
|+++++|++++|+||||||||||+++|+|.+ | .+.+++..+.. ..+..++|++|++.+|+.+++.+++
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~--~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKAL--A----EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAF 72 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHS--S----SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhC--C----CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcE
Confidence 5778899999999999999999999999953 2 36666655432 2345689999988777665555544
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=1.8e-09 Score=110.51 Aligned_cols=140 Identities=19% Similarity=0.202 Sum_probs=87.7
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCC
Q 008534 181 NPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPN 260 (562)
Q Consensus 181 ~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~ 260 (562)
++|++++|+|||||||||++..|++.+. +.+| +++.++.+|+. ..++.|.+...+
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~--~~~G--------------~~V~lv~~D~~---r~~a~eqL~~~~------ 157 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISM--LEKH--------------KKIAFITTDTY---RIAAVEQLKTYA------ 157 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHH--HTTC--------------CCEEEEECCCS---STTHHHHHHHHH------
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHH--HhcC--------------CEEEEEecCcc---cchHHHHHHHHH------
Confidence 4789999999999999999999998542 2245 35778887763 346666665422
Q ss_pred CccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 008534 261 TLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQD 340 (562)
Q Consensus 261 ~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~ 340 (562)
+.+|++... ..+ +..-+.+|++ +.+|+++|+| |+|+|+.....+.++ .+
T Consensus 158 ---------------~~~gl~~~~----------~~~-~~~l~~al~~--~~~~dlvIiD--T~G~~~~~~~~~~el-~~ 206 (296)
T 2px0_A 158 ---------------ELLQAPLEV----------CYT-KEEFQQAKEL--FSEYDHVFVD--TAGRNFKDPQYIDEL-KE 206 (296)
T ss_dssp ---------------TTTTCCCCB----------CSS-HHHHHHHHHH--GGGSSEEEEE--CCCCCTTSHHHHHHH-HH
T ss_pred ---------------HhcCCCeEe----------cCC-HHHHHHHHHH--hcCCCEEEEe--CCCCChhhHHHHHHH-HH
Confidence 112332110 112 2334555554 5999999999 999998765444443 33
Q ss_pred HHH----CCcEEEE-EecCCChHHHhcCCEEEEEcCCeEEEe
Q 008534 341 IAE----AGKTVVT-TIHQPSSRLFHKFDKLILLGKGSLLYF 377 (562)
Q Consensus 341 l~~----~g~Tvii-~tH~~~~~i~~~~D~i~vL~~G~iv~~ 377 (562)
+.. .+.++|+ ++|.. .++.+.++++..+..+.++..
T Consensus 207 ~l~~~~~~~~~lVl~at~~~-~~~~~~~~~~~~l~~~giVlt 247 (296)
T 2px0_A 207 TIPFESSIQSFLVLSATAKY-EDMKHIVKRFSSVPVNQYIFT 247 (296)
T ss_dssp HSCCCTTEEEEEEEETTBCH-HHHHHHTTTTSSSCCCEEEEE
T ss_pred HHhhcCCCeEEEEEECCCCH-HHHHHHHHHHhcCCCCEEEEe
Confidence 322 2334444 37874 346677777766777777764
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=98.88 E-value=3.3e-10 Score=107.21 Aligned_cols=143 Identities=18% Similarity=0.161 Sum_probs=76.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCC----CC-----CccEEEECCEeCCh------hccCcEEEEccCCCC-CCCCCHHH
Q 008534 185 VLALMGPSGSGKTTLLNLLSGRLME----PT-----VGGSITYNDHPYSK------SLKSKIGFVTQDDVL-FPHLTVKE 248 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~l~~----~~-----~~G~I~i~G~~~~~------~~~~~igyV~Q~~~l-~~~lTV~e 248 (562)
.++|+|+||||||||++.++|.... ++ ..|.|.++|.++.- ...+..++++|.... ...++|.+
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 110 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYD 110 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEE
Confidence 6899999999999999999986432 11 36899999976421 011112222221000 00011111
Q ss_pred HHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 008534 249 TLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDS 328 (562)
Q Consensus 249 nl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~ 328 (562)
+.... +.+.......+ +.........--.+++. .+|..-..+.+.+|++|+.+|+++++| ||++|.
T Consensus 111 ~~~~~---------s~~~~~~~~~~-~~~~~~~~~~i~~v~nK--~Dl~~~~~~~~~~a~~l~~~~~~~~ld--~Sald~ 176 (191)
T 1oix_A 111 IAKHL---------TYENVERWLKE-LRDHADSNIVIMLVGNK--SDLRHLRAVPTDEARAFAEKNGLSFIE--TSALDS 176 (191)
T ss_dssp TTCHH---------HHHTHHHHHHH-HHHHSCTTCEEEEEEEC--GGGGGGCCSCHHHHHHHHHHTTCEEEE--CCTTTC
T ss_pred CcCHH---------HHHHHHHHHHH-HHHhcCCCCcEEEEEEC--cccccccccCHHHHHHHHHHcCCEEEE--EeCCCC
Confidence 10000 00000000111 11111011101112221 123333334578999999999999999 999999
Q ss_pred HHHHHHHHHHHHH
Q 008534 329 TTALRIVQMLQDI 341 (562)
Q Consensus 329 ~~~~~i~~~L~~l 341 (562)
....++++.|.+.
T Consensus 177 ~~v~~l~~~l~~~ 189 (191)
T 1oix_A 177 TNVEAAFQTILTE 189 (191)
T ss_dssp TTHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 9999999888653
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=98.87 E-value=1.3e-12 Score=131.70 Aligned_cols=124 Identities=15% Similarity=0.204 Sum_probs=84.1
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh----hccCcEEEEccCCC-CCCC
Q 008534 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDV-LFPH 243 (562)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~----~~~~~igyV~Q~~~-l~~~ 243 (562)
...+++++++.+++| ++|+||||+|||||+++|++.+. .|.|.+++.++.. ...+.+++++|... .++.
T Consensus 61 ~~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 134 (278)
T 1iy2_A 61 NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPC 134 (278)
T ss_dssp CHHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT----CCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSE
T ss_pred CHHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC----CCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCc
Confidence 346899999999999 99999999999999999998542 6889998876432 22345778888753 5667
Q ss_pred CCHHHHHHHHHhhCCCC-CccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCE
Q 008534 244 LTVKETLTYAALLRLPN-TLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSL 316 (562)
Q Consensus 244 lTV~enl~~~~~~~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~i 316 (562)
+++.|++......+... .....+....+..++ ..|||||+||+.|++++..+|++
T Consensus 135 i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll------------------~~lsgg~~~~~~i~~a~t~~p~~ 190 (278)
T 1iy2_A 135 IVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLL------------------VEMDGFEKDTAIVVMAATNRPDI 190 (278)
T ss_dssp EEEEETHHHHHCC--------CHHHHHHHHHHH------------------HHHTTCCTTCCEEEEEEESCTTS
T ss_pred EEehhhhHhhhcccccccCCcchHHHHHHHHHH------------------HHHhCCCCCCCEEEEEecCCchh
Confidence 78888885332111000 000111122222221 35899999999999999999876
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=6.2e-10 Score=120.89 Aligned_cols=52 Identities=17% Similarity=0.143 Sum_probs=46.6
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCC
Q 008534 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS 224 (562)
Q Consensus 170 ~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~ 224 (562)
..+|+||||+|++ ++++|+|||||||||||++|+|.+. +.+|+|.++|.++.
T Consensus 17 ~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~~~ 68 (483)
T 3euj_A 17 WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALI--PDLTLLNFRNTTEA 68 (483)
T ss_dssp ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHC--CCTTTCCCCCTTSC
T ss_pred cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCC--CCCCEEEECCEEcc
Confidence 3589999999999 9999999999999999999999543 55899999998764
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=1.8e-12 Score=128.49 Aligned_cols=123 Identities=15% Similarity=0.203 Sum_probs=82.8
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh----hccCcEEEEccCCC-CCCCC
Q 008534 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDV-LFPHL 244 (562)
Q Consensus 170 ~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~----~~~~~igyV~Q~~~-l~~~l 244 (562)
..+++++++.+++| ++|+||||+|||||+++|++... .|.|.++|.++.. ...+.+++++|... ..+.+
T Consensus 38 ~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i 111 (254)
T 1ixz_A 38 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCI 111 (254)
T ss_dssp HHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT----CCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSSEE
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC----CCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhcCCeE
Confidence 46899999999999 99999999999999999998542 6889998866422 22345677888743 55667
Q ss_pred CHHHHHHHHHhhCCCC-CccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCE
Q 008534 245 TVKETLTYAALLRLPN-TLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSL 316 (562)
Q Consensus 245 TV~enl~~~~~~~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~i 316 (562)
++.|++......+... .....+....+..++ ..|||||+||+.|++++..+|++
T Consensus 112 ~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll------------------~~l~g~~~~~~~i~~a~t~~p~~ 166 (254)
T 1ixz_A 112 VFIDEIDAVGRKRGSGVGGGNDEREQTLNQLL------------------VEMDGFEKDTAIVVMAATNRPDI 166 (254)
T ss_dssp EEEETHHHHHC---------CHHHHHHHHHHH------------------HHHHTCCTTCCEEEEEEESCGGG
T ss_pred EEehhhhhhhcccCccccccchHHHHHHHHHH------------------HHHhCCCCCCCEEEEEccCCchh
Confidence 7888884322111000 000111122222222 35899999999999999999986
|
| >3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=98.83 E-value=5.9e-11 Score=132.76 Aligned_cols=160 Identities=18% Similarity=0.176 Sum_probs=99.4
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEccCC----------
Q 008534 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDD---------- 238 (562)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~~~igyV~Q~~---------- 238 (562)
...+++++++.+.+|+.++|+||||+|||||+++|++.+. +...|.+.+++.+... ....++|+++..
T Consensus 46 ~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~-~~~~~~~~~~~~~~~~-~~p~i~~~p~g~~~~~~e~~~~ 123 (604)
T 3k1j_A 46 QEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLP-TETLEDILVFPNPEDE-NMPRIKTVPACQGRRIVEKYRE 123 (604)
T ss_dssp CHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSC-CSSCEEEEEECCTTCT-TSCEEEEEETTHHHHHHHHHHH
T ss_pred chhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCC-cccCCeEEEeCCcccc-cCCcEEEEecchHHHHHHHHHH
Confidence 4568999999999999999999999999999999999654 3434889888876543 345688888753
Q ss_pred ------------CCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHH
Q 008534 239 ------------VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (562)
Q Consensus 239 ------------~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~I 306 (562)
..+..+++.+|+........+..+-.. ......++ +|.-+... ....++|+|++|++..
T Consensus 124 ~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~-~~~~~~~L---~G~~~~~~-----~~~g~~~~g~~~~i~~ 194 (604)
T 3k1j_A 124 KAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDA-TGAHAGAL---LGDVRHDP-----FQSGGLGTPAHERVEP 194 (604)
T ss_dssp HHHHHTCC-----------CCCEEEECCTTCSSCCEEEC-TTCCHHHH---HCEECCCC-----C----CCCCGGGGEEC
T ss_pred hhccchhhhhhcccccccccccceeeccccCCCCCEEEc-CCCCHHhc---CceEEech-----hhcCCccccccccccC
Confidence 111222222222110000000000000 00001111 12110000 0114699999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 008534 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQD 340 (562)
Q Consensus 307 AraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~ 340 (562)
++....++.+|||||... |++.....+++.|.+
T Consensus 195 g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 195 GMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp CHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred ceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 999999999999999988 899988888888764
|
| >1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=98.68 E-value=6.1e-10 Score=109.74 Aligned_cols=72 Identities=18% Similarity=0.213 Sum_probs=48.1
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh--
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~-- 225 (562)
..|+++|+...+ .. ++++.+ ++++|+|||||||||||++|+|.+. +.+|+|.++|.++..
T Consensus 8 ~~l~l~~~~~~~---------~~------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~--~~~G~i~~~g~~~~~~~ 69 (227)
T 1qhl_A 8 RSLTLINWNGFF---------AR------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALI--PDLTLLHFRNTTEAGAT 69 (227)
T ss_dssp EEEEEEEETTEE---------EE------EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHS--CCTTTC-----------
T ss_pred eEEEEEeeeccc---------CC------EEEEcC-cEEEEECCCCCCHHHHHHHHhcccc--cCCCeEEECCEEcccCC
Confidence 357888876543 11 456666 8999999999999999999999654 458999999987621
Q ss_pred ----------hccCcEEEEccC
Q 008534 226 ----------SLKSKIGFVTQD 237 (562)
Q Consensus 226 ----------~~~~~igyV~Q~ 237 (562)
..+..++||+|+
T Consensus 70 ~~~~~~~~~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 70 SGSRDKGLHGKLKAGVCYSMLD 91 (227)
T ss_dssp -------CGGGBCSSEEEEEEE
T ss_pred ccccccchhhHhhcCcEEEEEe
Confidence 135678999984
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=98.67 E-value=4.1e-10 Score=110.10 Aligned_cols=38 Identities=32% Similarity=0.305 Sum_probs=22.9
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHH-cCC
Q 008534 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLS-GRL 207 (562)
Q Consensus 170 ~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~-G~l 207 (562)
.+..+++||++++|++++|+||||||||||+++|+ |.+
T Consensus 14 ~~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 14 AQTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp --------CCEECCCEEEEECSCC----CHHHHHHC---
T ss_pred hcccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 45789999999999999999999999999999999 964
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=98.62 E-value=7.5e-09 Score=98.13 Aligned_cols=38 Identities=21% Similarity=0.176 Sum_probs=33.3
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 008534 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA 342 (562)
Q Consensus 303 Rv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~ 342 (562)
....|++|+.+|.++++| ||++|.....++++.|.+..
T Consensus 129 ~~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 129 PTDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp CHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHHH
Confidence 356799999999999999 99999999999998887654
|
| >3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.61 E-value=2.4e-08 Score=104.65 Aligned_cols=79 Identities=18% Similarity=0.192 Sum_probs=49.9
Q ss_pred ceeeceE--EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccE-EEECCEeCC-hhccCcEEEEccCCCCCCCCCH
Q 008534 171 DILNGIT--GSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGS-ITYNDHPYS-KSLKSKIGFVTQDDVLFPHLTV 246 (562)
Q Consensus 171 ~iL~~vs--~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~-I~i~G~~~~-~~~~~~igyV~Q~~~l~~~lTV 246 (562)
+.|+.+- +=+++|+++.|.||||||||||+..+++... ..+|. +++++.... ....+++|+.+|+..+....++
T Consensus 47 ~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~--~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~ 124 (356)
T 3hr8_A 47 LAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQ--KMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHG 124 (356)
T ss_dssp HHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSH
T ss_pred HHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCH
Confidence 3455543 3689999999999999999999999997432 22454 466665432 2233446666665444433455
Q ss_pred HHHHH
Q 008534 247 KETLT 251 (562)
Q Consensus 247 ~enl~ 251 (562)
.+.+.
T Consensus 125 e~~l~ 129 (356)
T 3hr8_A 125 EQALE 129 (356)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
|
| >2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* | Back alignment and structure |
|---|
Probab=98.60 E-value=4.4e-08 Score=106.39 Aligned_cols=59 Identities=22% Similarity=0.397 Sum_probs=43.6
Q ss_pred hhHHHHHHHHHHHhhCCCEEEEeCC----------CCCCCHHHHHHHHHHHHHHH----HCCcEEEEEecCCC
Q 008534 298 GGERKRVCIGNEIIINPSLLFLDEP----------TSGLDSTTALRIVQMLQDIA----EAGKTVVTTIHQPS 356 (562)
Q Consensus 298 GGqrqRv~IAraLl~~P~iLlLDEP----------TsgLD~~~~~~i~~~L~~l~----~~g~Tvii~tH~~~ 356 (562)
|++++|-.+++|....|.|||+||+ +.|.|......+.+.|..+- ..+..||.+||++.
T Consensus 93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~ 165 (476)
T 2ce7_A 93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPD 165 (476)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGG
T ss_pred cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChh
Confidence 6778888899999999999999999 44677777666777776663 24678899999874
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=98.56 E-value=2.4e-09 Score=102.37 Aligned_cols=68 Identities=22% Similarity=0.280 Sum_probs=45.3
Q ss_pred EEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChh---ccCcEEEEccCCCCCCCCCHHHHH
Q 008534 177 TGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS---LKSKIGFVTQDDVLFPHLTVKETL 250 (562)
Q Consensus 177 s~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~---~~~~igyV~Q~~~l~~~lTV~enl 250 (562)
.++.++|++++|+||||||||||+++|++.+ |.+.++|.++... .+..+++++|++..++.+++.+++
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~------g~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 93 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET------GLEFAEADAFHSPENIATMQRGIPLTDEDRWPWLRSLAEW 93 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHH------CCEEEEGGGGSCHHHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh------CCeEEcccccccHHHHHHHhcCCCCCCcccccHHHHHHHH
Confidence 3667899999999999999999999999843 7899998776421 122457777765444333444433
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=98.51 E-value=1.9e-10 Score=121.53 Aligned_cols=144 Identities=19% Similarity=0.193 Sum_probs=84.0
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEccCCC-CCCCCCHHH
Q 008534 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDV-LFPHLTVKE 248 (562)
Q Consensus 170 ~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~~~igyV~Q~~~-l~~~lTV~e 248 (562)
..+|+++++.+++|++++|+||||||||||+++|+|. .+|.+..-..+- ..+...+++++|... ++++.+...
T Consensus 156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~-----~~g~~~~~~~~~-~~~~~~lg~~~q~~~~l~dd~~~~~ 229 (377)
T 1svm_A 156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLEL-----CGGKALNVNLPL-DRLNFELGVAIDQFLVVFEDVKGTG 229 (377)
T ss_dssp HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHH-----HCCEEECCSSCT-TTHHHHHGGGTTCSCEEETTCCCST
T ss_pred HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhh-----cCCcEEEEeccc-hhHHHHHHHhcchhHHHHHHHHHHH
Confidence 4689999999999999999999999999999999983 257776522111 112223667777654 233333222
Q ss_pred HHHHHHhhCCCCCccHHHHHHHHHHHHHH---cCCCc----ccccc----ccCcccCCCChhHHHHHHHHHHHhhCCCEE
Q 008534 249 TLTYAALLRLPNTLTKQQKEKRAIDVINE---LGLER----CQDTM----IGGSFVRGVSGGERKRVCIGNEIIINPSLL 317 (562)
Q Consensus 249 nl~~~~~~~~~~~~~~~~~~~~v~~~l~~---lgL~~----~~~t~----vg~~~~~~LSGGqrqRv~IAraLl~~P~iL 317 (562)
++. .+.... ........+.+.+.. +.+.. ..+.. .-+.....+++|+++|+..+.+++..|+++
T Consensus 230 ~~~----r~l~~~-~~~~~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~~~pDLl 304 (377)
T 1svm_A 230 GES----RDLPSG-QGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKDYLK 304 (377)
T ss_dssp TTT----TTCCCC-SHHHHHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCCCHHHH
T ss_pred HHH----hhcccc-CcchHHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhccCCCCCeE
Confidence 110 000000 000011222333321 00110 00000 001234568999999999988888999998
Q ss_pred E-EeCCCC
Q 008534 318 F-LDEPTS 324 (562)
Q Consensus 318 l-LDEPTs 324 (562)
+ ||+|+.
T Consensus 305 iyLd~~~~ 312 (377)
T 1svm_A 305 HCLERSEF 312 (377)
T ss_dssp HHHHTCTH
T ss_pred EEEeCCHH
Confidence 7 999987
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=98.48 E-value=1.8e-08 Score=105.84 Aligned_cols=148 Identities=19% Similarity=0.224 Sum_probs=86.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCC---------CCccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHH---HHHH
Q 008534 185 VLALMGPSGSGKTTLLNLLSGRLMEP---------TVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKE---TLTY 252 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~l~~~---------~~~G~I~i~G~~~~~~~~~~igyV~Q~~~l~~~lTV~e---nl~~ 252 (562)
.++|+|++|||||||++.|+|..... +..|.|.++|.++. +....|++.+.+. ..|.. .+..
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~--l~DT~G~i~~lp~----~lve~f~~tl~~ 254 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIM--LVDTVGFIRGIPP----QIVDAFFVTLSE 254 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEE--EEECCCBCSSCCG----GGHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEE--EEeCCCchhcCCH----HHHHHHHHHHHH
Confidence 39999999999999999999864310 34688999886541 2223455544321 11211 1111
Q ss_pred HHhh----C-CC-CCcc--HHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHH----HHH-hhCCCEEEE
Q 008534 253 AALL----R-LP-NTLT--KQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG----NEI-IINPSLLFL 319 (562)
Q Consensus 253 ~~~~----~-~~-~~~~--~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA----raL-l~~P~iLlL 319 (562)
.... . .. .... .......+.++++.+++.+..--.+++. +..+|+|+++|+.++ +++ ..+|++
T Consensus 255 ~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK-~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~--- 330 (364)
T 2qtf_A 255 AKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNK-IDKINGDLYKKLDLVEKLSKELYSPIFDV--- 330 (364)
T ss_dssp GGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEEC-GGGCCSCHHHHHHHHHHHHHHHCSCEEEE---
T ss_pred HHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEEC-CCCCCchHHHHHHHHHHHHHHhcCCCCcE---
Confidence 1000 0 00 0111 1222334567788777654332222332 345788899988887 555 334454
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHH
Q 008534 320 DEPTSGLDSTTALRIVQMLQDIAE 343 (562)
Q Consensus 320 DEPTsgLD~~~~~~i~~~L~~l~~ 343 (562)
+|+|++|......+.+.|.++..
T Consensus 331 -~~~SA~~g~gi~~L~~~I~~~l~ 353 (364)
T 2qtf_A 331 -IPISALKRTNLELLRDKIYQLAT 353 (364)
T ss_dssp -EECBTTTTBSHHHHHHHHHHHHH
T ss_pred -EEEECCCCcCHHHHHHHHHHHhc
Confidence 89999999999999999988654
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=98.43 E-value=3.7e-09 Score=101.06 Aligned_cols=55 Identities=24% Similarity=0.249 Sum_probs=44.9
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEE--EECCEeCChh
Q 008534 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSI--TYNDHPYSKS 226 (562)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I--~i~G~~~~~~ 226 (562)
...+.+.+++..++|++++|+||||||||||+++|++.+. ..|.+ +++|.++...
T Consensus 11 ~~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~---~~G~~~~~~d~d~~~~~ 67 (200)
T 3uie_A 11 SVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY---QKGKLCYILDGDNVRHG 67 (200)
T ss_dssp CCCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH---HTTCCEEEEEHHHHTTT
T ss_pred ccCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH---hcCceEEEecCchhhhH
Confidence 4456778888889999999999999999999999998653 35777 8888766443
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=98.37 E-value=2.1e-07 Score=86.84 Aligned_cols=37 Identities=22% Similarity=0.288 Sum_probs=33.0
Q ss_pred cee--eceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 008534 171 DIL--NGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLM 208 (562)
Q Consensus 171 ~iL--~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~ 208 (562)
..+ +++++.+.+| +++|+||||||||||+++|.+.+.
T Consensus 13 ~~~~~~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 13 KSYGNKKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp GGGCSSCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred EeecCccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHc
Confidence 356 7899999999 999999999999999999998654
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.37 E-value=2.8e-08 Score=99.23 Aligned_cols=52 Identities=33% Similarity=0.456 Sum_probs=35.7
Q ss_pred eEEEEeE-EEEEeecccCCccccceeeceEEEEeC---CeEEEEECCCCCcHHHHHHHHHcCC
Q 008534 149 YLKFTDV-TYKVILKGMTSSEEKDILNGITGSVNP---GEVLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 149 ~l~~~nv-s~~y~~~~~~~~~~~~iL~~vs~~i~~---Ge~~alvGpsGsGKSTLl~~L~G~l 207 (562)
.|+++|| +++|. ....+|+|+||+|++ |++++|+|++||||||+.++|++.+
T Consensus 17 ~l~~~~~~~~~~~-------~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 17 LLETGSLLHSPFD-------EEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp ----------------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEcceeeEEec-------CcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 6999999 99871 245799999999999 9999999999999999999999743
|
| >4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=98.35 E-value=2.7e-07 Score=96.02 Aligned_cols=131 Identities=12% Similarity=0.180 Sum_probs=86.2
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHH
Q 008534 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKE 248 (562)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~~~igyV~Q~~~l~~~lTV~e 248 (562)
+.+-|+.+..-+++|+++.|.|++|+|||||+.-++.... . .| ..+.|+.= .++..+
T Consensus 32 G~~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a--~-------~g--------~~Vl~fSl------Ems~~q 88 (338)
T 4a1f_A 32 GFVQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSAL--N-------DD--------RGVAVFSL------EMSAEQ 88 (338)
T ss_dssp SCHHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHH--H-------TT--------CEEEEEES------SSCHHH
T ss_pred CChHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH--H-------cC--------CeEEEEeC------CCCHHH
Confidence 3456777777899999999999999999999988885321 1 11 12445432 234333
Q ss_pred HHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 008534 249 TLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDS 328 (562)
Q Consensus 249 nl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~ 328 (562)
.+ .++......+++.+..+ ..||.++++|+..|...+.+++++|.|+|...+
T Consensus 89 l~------------------~Rlls~~~~v~~~~l~~--------g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si-- 140 (338)
T 4a1f_A 89 LA------------------LRALSDLTSINMHDLES--------GRLDDDQWENLAKCFDHLSQKKLFFYDKSYVRI-- 140 (338)
T ss_dssp HH------------------HHHHHHHHCCCHHHHHH--------TCCCHHHHHHHHHHHHHHHHSCEEEECCTTCCH--
T ss_pred HH------------------HHHHHHhhCCCHHHHhc--------CCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcH--
Confidence 22 12222222222222111 259999999999999999999999999986543
Q ss_pred HHHHHHHHHHHHHHH-C-CcEEEEEec
Q 008534 329 TTALRIVQMLQDIAE-A-GKTVVTTIH 353 (562)
Q Consensus 329 ~~~~~i~~~L~~l~~-~-g~Tvii~tH 353 (562)
.+|...++++.+ . |..+|+|-|
T Consensus 141 ---~~i~~~ir~l~~~~gg~~lIVIDy 164 (338)
T 4a1f_A 141 ---EQIRLQLRKLKSQHKELGIAFIDY 164 (338)
T ss_dssp ---HHHHHHHHHHHHHCTTEEEEEEEE
T ss_pred ---HHHHHHHHHHHHhcCCCCEEEEec
Confidence 366666777654 3 677777755
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.33 E-value=1.1e-07 Score=90.09 Aligned_cols=30 Identities=30% Similarity=0.381 Sum_probs=25.9
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 008534 178 GSVNPGEVLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 178 ~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l 207 (562)
++|++|++++|+||||||||||+++|++.+
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 468899999999999999999999999965
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=98.30 E-value=6.6e-07 Score=102.80 Aligned_cols=72 Identities=13% Similarity=0.204 Sum_probs=56.8
Q ss_pred cCCCChhHHHHHHHHHHHhhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHHCCcEEEEE-ecCCChHHHhcCCE
Q 008534 293 VRGVSGGERKRVCIGNEIIINPSLLFLDEPTS-GLDSTTALRIVQMLQDIAEAGKTVVTT-IHQPSSRLFHKFDK 365 (562)
Q Consensus 293 ~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTs-gLD~~~~~~i~~~L~~l~~~g~Tvii~-tH~~~~~i~~~~D~ 365 (562)
+.-+|.|+.+|..+++.++.+++++|+|||.. +||......+++.+.......++|+++ ||++ ..+.++++.
T Consensus 188 I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~-~~l~~~~~~ 261 (773)
T 2xau_A 188 LKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDA-EKFQRYFND 261 (773)
T ss_dssp EEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCC-HHHHHHTTS
T ss_pred EEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccH-HHHHHHhcC
Confidence 34589999999999999999999999999996 999887777777766554445778885 8875 445566663
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.30 E-value=2.6e-07 Score=87.98 Aligned_cols=43 Identities=28% Similarity=0.169 Sum_probs=24.4
Q ss_pred CCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 008534 165 TSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 165 ~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l 207 (562)
+++....+++||||++++|++++|+||+||||||+.+.|++.+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 7 HSSGVDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp -----------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3455678999999999999999999999999999999999743
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=98.29 E-value=1e-07 Score=98.39 Aligned_cols=78 Identities=19% Similarity=0.194 Sum_probs=57.5
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh--------hc-----cCcEEEE-ccC
Q 008534 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--------SL-----KSKIGFV-TQD 237 (562)
Q Consensus 172 iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--------~~-----~~~igyV-~Q~ 237 (562)
++++++|++++|++++|+||||+||||++..|++.+. ..+|+|.+.+.++.+ .+ +..+.++ +|.
T Consensus 94 ~~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~--~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~ 171 (320)
T 1zu4_A 94 KKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYA--ELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANK 171 (320)
T ss_dssp --CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHH--HTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSS
T ss_pred cccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCC
Confidence 3478999999999999999999999999999998653 347899998877642 22 5568999 776
Q ss_pred CCCCCCCCHHHHHH
Q 008534 238 DVLFPHLTVKETLT 251 (562)
Q Consensus 238 ~~l~~~lTV~enl~ 251 (562)
....|..++++++.
T Consensus 172 ~~~~p~~~~~~~l~ 185 (320)
T 1zu4_A 172 LNADPASVVFDAIK 185 (320)
T ss_dssp TTCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 54444434444444
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=98.28 E-value=5.2e-08 Score=96.85 Aligned_cols=63 Identities=24% Similarity=0.254 Sum_probs=46.9
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHH---cCCCCCCCccEEE--------ECCEeCCh-----hccCcEEEE
Q 008534 171 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLS---GRLMEPTVGGSIT--------YNDHPYSK-----SLKSKIGFV 234 (562)
Q Consensus 171 ~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~---G~l~~~~~~G~I~--------i~G~~~~~-----~~~~~igyV 234 (562)
.++++++ ++|++++|+|||||||||++++|+ |..+ +++|.|. .+|.++.. .+++.++++
T Consensus 18 ~~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~--~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 92 (252)
T 4e22_A 18 LERPHMT---AIAPVITVDGPSGAGKGTLCKALAESLNWRL--LDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVR 92 (252)
T ss_dssp -----CT---TTSCEEEEECCTTSSHHHHHHHHHHHTTCEE--EEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEE
T ss_pred hhhhhcC---CCCcEEEEECCCCCCHHHHHHHHHHhcCCCc--CCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEE
Confidence 3455544 789999999999999999999999 8432 4689998 88887732 356778999
Q ss_pred ccCC
Q 008534 235 TQDD 238 (562)
Q Consensus 235 ~Q~~ 238 (562)
+|.+
T Consensus 93 ~~~~ 96 (252)
T 4e22_A 93 FVSQ 96 (252)
T ss_dssp EEEE
T ss_pred EecC
Confidence 9754
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.24 E-value=4.2e-09 Score=115.04 Aligned_cols=129 Identities=16% Similarity=0.199 Sum_probs=85.0
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChh----ccCcEEEEccCCC-CCCCC
Q 008534 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS----LKSKIGFVTQDDV-LFPHL 244 (562)
Q Consensus 170 ~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~----~~~~igyV~Q~~~-l~~~l 244 (562)
..+++++++.+++| ++|+||||+|||||+++|++... .+.|.++|.++... ..+++..++|... ..|.+
T Consensus 53 ~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~----~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~i 126 (499)
T 2dhr_A 53 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCI 126 (499)
T ss_dssp GGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT----CCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSCE
T ss_pred hhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC----CCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCCE
Confidence 35789999999999 99999999999999999998542 57899998765421 1234566777653 44555
Q ss_pred CHHHHHHHHHhhCCC-CCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEeCCC
Q 008534 245 TVKETLTYAALLRLP-NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPT 323 (562)
Q Consensus 245 TV~enl~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPT 323 (562)
.+.|++......+.. ......+....+..++ ..||||++|+..|+++...+|++ |||+.
T Consensus 127 l~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL------------------~~Ldg~~~~~~viviAatn~p~~--LD~aL 186 (499)
T 2dhr_A 127 VFIDEIDAVGRKRGSGVGGGNDEREQTLNQLL------------------VEMDGFEKDTAIVVMAATNRPDI--LDPAL 186 (499)
T ss_dssp EEEECGGGTCCCSSSSTTTSSHHHHHHHHHHH------------------HHGGGCCSSCCCEEEECCSCGGG--SCTTT
T ss_pred EEEehHHHHHHhhccCcCCCcHHHHHHHHHHH------------------HHhcccccCccEEEEEecCChhh--cCccc
Confidence 566666422111100 0001122222333333 24788999998899999999987 89887
Q ss_pred C
Q 008534 324 S 324 (562)
Q Consensus 324 s 324 (562)
-
T Consensus 187 l 187 (499)
T 2dhr_A 187 L 187 (499)
T ss_dssp S
T ss_pred c
Confidence 5
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.24 E-value=1.7e-07 Score=89.34 Aligned_cols=127 Identities=17% Similarity=0.242 Sum_probs=71.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccH
Q 008534 185 VLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTK 264 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~ 264 (562)
+++|+|||||||||+.++|++ + |...+++..+.+... + +. .
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-l------g~~~id~d~~~~~~~-------~-----~~-----------------~--- 44 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-L------GVPLVDADVVAREVV-------A-----KD-----------------S--- 44 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-T------TCCEEEHHHHHHHTT-------C-----SS-----------------C---
T ss_pred EEEEECCCCCCHHHHHHHHHH-C------CCcccchHHHHHHHc-------c-----CC-----------------h---
Confidence 689999999999999999997 2 333444322111000 0 00 0
Q ss_pred HHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC
Q 008534 265 QQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA 344 (562)
Q Consensus 265 ~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~ 344 (562)
..+.++.+.+|... -.+.|+.+|..+++.+..+|..+.++ .+.++|.....+.+.+... .
T Consensus 45 ----~~~~~i~~~~g~~~------------~~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~--~ 104 (206)
T 1jjv_A 45 ----PLLSKIVEHFGAQI------------LTEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ--T 104 (206)
T ss_dssp ----HHHHHHHHHHCTTC------------C------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC--C
T ss_pred ----HHHHHHHHHhCHHH------------hccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc--C
Confidence 01233444455321 13678889999998888887654333 3345666655555544432 2
Q ss_pred CcEEEEEecCCChH-HHhcCCEEEEEc
Q 008534 345 GKTVVTTIHQPSSR-LFHKFDKLILLG 370 (562)
Q Consensus 345 g~Tvii~tH~~~~~-i~~~~D~i~vL~ 370 (562)
+.++|+.+|.+.+. +...||.+++++
T Consensus 105 ~~~vv~~~~~l~e~~~~~~~d~vi~l~ 131 (206)
T 1jjv_A 105 APYTLFVVPLLIENKLTALCDRILVVD 131 (206)
T ss_dssp SSEEEEECTTTTTTTCGGGCSEEEEEE
T ss_pred CCEEEEEechhhhcCcHhhCCEEEEEE
Confidence 56888888876542 246789888874
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.21 E-value=1.3e-06 Score=91.14 Aligned_cols=61 Identities=8% Similarity=0.108 Sum_probs=49.1
Q ss_pred CCCChhHHHHHHHHHHHhhCCCEEEEe-CCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEe--cCCC
Q 008534 294 RGVSGGERKRVCIGNEIIINPSLLFLD-EPTSGLDSTTALRIVQMLQDIAEAGKTVVTTI--HQPS 356 (562)
Q Consensus 294 ~~LSGGqrqRv~IAraLl~~P~iLlLD-EPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~t--H~~~ 356 (562)
..+|+||+|++. +.+...++-|+++| +|+.++|......+++.+..... +..+|++. ||+.
T Consensus 230 ~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl~ 293 (357)
T 2e87_A 230 SERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDVA 293 (357)
T ss_dssp TTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTTC
T ss_pred hhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECcccC
Confidence 468999998886 55556778889999 99999999998888888776543 77888888 7754
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=98.17 E-value=6.1e-06 Score=86.01 Aligned_cols=159 Identities=16% Similarity=0.169 Sum_probs=82.6
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCC----hhccCcEEEEccCCC-CCCCC
Q 008534 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS----KSLKSKIGFVTQDDV-LFPHL 244 (562)
Q Consensus 170 ~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~----~~~~~~igyV~Q~~~-l~~~l 244 (562)
..+|++++++++ .++|+|++|||||||++.|+|.-..|...|.++-....+. .......+...+.+. .|.+.
T Consensus 24 ~~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (360)
T 3t34_A 24 SSALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDF 100 (360)
T ss_dssp SCCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCH
T ss_pred ccccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCH
Confidence 458999999998 9999999999999999999995332343454432222111 001122333333221 11110
Q ss_pred -CHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCC----C----------------ccccccccCcc---cCCCChhH
Q 008534 245 -TVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL----E----------------RCQDTMIGGSF---VRGVSGGE 300 (562)
Q Consensus 245 -TV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL----~----------------~~~~t~vg~~~---~~~LSGGq 300 (562)
.+.+.+. .+.....|- . ...||. |-.. ....++.+
T Consensus 101 ~~v~~~i~--------------------~~~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtP-G~~~~~~~~q~~~~~ 159 (360)
T 3t34_A 101 AAVRKEIQ--------------------DETDRETGRSKAISSVPIHLSIYSPNVVNLTLIDLP-GLTKVAVDGQSDSIV 159 (360)
T ss_dssp HHHHHHHH--------------------HHHHHTSCTTCCCCCSCEEEEEEETTSCSEEEEECC-CBCSSCCTTCCSSHH
T ss_pred HHHHHHHH--------------------HHHHHhcCCCCCcccceEEEEEeCCCCCCeEEEECC-CCCcCCcCCCchhHH
Confidence 1111111 011111110 0 012321 2111 12357788
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCC-cEEEEEec
Q 008534 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAG-KTVVTTIH 353 (562)
Q Consensus 301 rqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g-~Tvii~tH 353 (562)
+++..+++..+.+|+++||.-..+..|... ...++.++.+...| .+|++++.
T Consensus 160 ~~~~~~~~~~i~~~d~iilvv~~~~~~~~~-~~~~~l~~~~~~~~~~~i~V~nK 212 (360)
T 3t34_A 160 KDIENMVRSYIEKPNCIILAISPANQDLAT-SDAIKISREVDPSGDRTFGVLTK 212 (360)
T ss_dssp HHHHHHHHHHHHSSSEEEEEEEETTSCGGG-CHHHHHHHHSCTTCTTEEEEEEC
T ss_pred HHHHHHHHHHhhcCCeEEEEeecccCCcCC-HHHHHHHHHhcccCCCEEEEEeC
Confidence 999999999999999877774333445443 45566666665445 57777665
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=98.12 E-value=1.8e-06 Score=92.86 Aligned_cols=98 Identities=11% Similarity=0.170 Sum_probs=61.9
Q ss_pred hCCCEEEEeCCCCCCCH-HHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEE-EcCCeEEEecChH--HHHHHH
Q 008534 312 INPSLLFLDEPTSGLDS-TTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLIL-LGKGSLLYFGKAS--EAMAYF 387 (562)
Q Consensus 312 ~~P~iLlLDEPTsgLD~-~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~v-L~~G~iv~~G~~~--el~~~f 387 (562)
.+|++||+||+..-.+. .++..++..+..+.+.|+.||+++|++..++..+.+++.- +..|.++..++++ +..+.+
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL 272 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIA 272 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHH
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHH
Confidence 38999999999887664 6778889999888777899999999865432223344333 4567777776653 333322
Q ss_pred ----HhcCCCCCCCCChHHHHHHhhcCC
Q 008534 388 ----SSIGCSPQIAMNPAEFLLDLANGN 411 (562)
Q Consensus 388 ----~~~g~~~~~~~npad~~~~~~~~~ 411 (562)
...|...+ ....+++.....++
T Consensus 273 ~~~~~~~~~~i~--~e~l~~la~~~~gn 298 (440)
T 2z4s_A 273 RKMLEIEHGELP--EEVLNFVAENVDDN 298 (440)
T ss_dssp HHHHHHHTCCCC--TTHHHHHHHHCCSC
T ss_pred HHHHHHcCCCCC--HHHHHHHHHhcCCC
Confidence 33344333 23456665554433
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.10 E-value=6.3e-07 Score=84.10 Aligned_cols=37 Identities=22% Similarity=0.287 Sum_probs=28.6
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEE
Q 008534 181 NPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITY 218 (562)
Q Consensus 181 ~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i 218 (562)
.+|++++|+||||||||||+++|++.+. +...|.|..
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~-~~~~~~i~~ 39 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHP-DRFAYPIPH 39 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCT-TTEECCCCE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCC-ccEEEeeec
Confidence 3689999999999999999999998542 223455543
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=98.05 E-value=1.1e-05 Score=83.49 Aligned_cols=44 Identities=14% Similarity=0.068 Sum_probs=35.1
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH---CCcEEEEEecCCC
Q 008534 312 INPSLLFLDEPTSGLDSTTALRIVQMLQDIAE---AGKTVVTTIHQPS 356 (562)
Q Consensus 312 ~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~---~g~Tvii~tH~~~ 356 (562)
.+|.+|++||+... |+.....+.+.+.++.. .+.++|+++|++.
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~ 170 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDA 170 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTH
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCch
Confidence 45889999999876 88888888888776655 5788999999863
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=98.04 E-value=1.8e-07 Score=86.82 Aligned_cols=38 Identities=24% Similarity=0.350 Sum_probs=32.1
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCC
Q 008534 181 NPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS 224 (562)
Q Consensus 181 ~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~ 224 (562)
.+|++++|+|||||||||++++|++.+ |.+.+++.++.
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~------g~~~i~~d~~~ 43 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL------HAAFLDGDFLH 43 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH------TCEEEEGGGGC
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh------CcEEEeCcccc
Confidence 468999999999999999999999742 77888876653
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=98.04 E-value=1.9e-06 Score=97.44 Aligned_cols=131 Identities=18% Similarity=0.113 Sum_probs=77.8
Q ss_pred EEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh----hccCcEEEEccCCCCCCCCCHHHHHHH
Q 008534 177 TGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHLTVKETLTY 252 (562)
Q Consensus 177 s~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~----~~~~~igyV~Q~~~l~~~lTV~enl~~ 252 (562)
|+.+++|..++|+|++|+|||||++.|++........|+| .+|..+.. +.++.+++.+|...++.. ++..|
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~-~~~~n--- 77 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFR-GHRVF--- 77 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEET-TEEEE---
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeC-CEEEE---
Confidence 4567889999999999999999999999643211246777 56655432 234556776665544321 11111
Q ss_pred HHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 008534 253 AALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTAL 332 (562)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~ 332 (562)
..||. |.. .++ .......-..++.++++| |+.|+++.+.
T Consensus 78 ------------------------------liDTp-G~~---~f~-----~~~~~~l~~ad~~ilVvD-~~~g~~~qt~- 116 (665)
T 2dy1_A 78 ------------------------------LLDAP-GYG---DFV-----GEIRGALEAADAALVAVS-AEAGVQVGTE- 116 (665)
T ss_dssp ------------------------------EEECC-CSG---GGH-----HHHHHHHHHCSEEEEEEE-TTTCSCHHHH-
T ss_pred ------------------------------EEeCC-Ccc---chH-----HHHHHHHhhcCcEEEEEc-CCcccchhHH-
Confidence 12221 110 111 112222235678899999 9999998876
Q ss_pred HHHHHHHHHHHCCcEEEEEecCCC
Q 008534 333 RIVQMLQDIAEAGKTVVTTIHQPS 356 (562)
Q Consensus 333 ~i~~~L~~l~~~g~Tvii~tH~~~ 356 (562)
.+++ .+.+.+.++|++.|..+
T Consensus 117 ~~~~---~~~~~~ip~ilv~NKiD 137 (665)
T 2dy1_A 117 RAWT---VAERLGLPRMVVVTKLD 137 (665)
T ss_dssp HHHH---HHHHTTCCEEEEEECGG
T ss_pred HHHH---HHHHccCCEEEEecCCc
Confidence 3333 33345888999999854
|
| >1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A | Back alignment and structure |
|---|
Probab=98.03 E-value=2.2e-05 Score=81.45 Aligned_cols=144 Identities=17% Similarity=0.183 Sum_probs=79.7
Q ss_pred eeceE-EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHHHHH
Q 008534 173 LNGIT-GSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLT 251 (562)
Q Consensus 173 L~~vs-~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~~~igyV~Q~~~l~~~lTV~enl~ 251 (562)
|+.+- +-+++|+++.|.||+|+|||||+..++.....+...| | ....+.|+.-+..+ ....-..
T Consensus 111 LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~g-----g------~~~~vlyi~~E~~~----~~~~l~~ 175 (343)
T 1v5w_A 111 FDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGG-----Y------PGGKIIFIDTENTF----RPDRLRD 175 (343)
T ss_dssp HHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTT-----B------CCCEEEEEESSSCC----CHHHHHH
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccC-----C------CCCeEEEEECCCCC----CHHHHHH
Confidence 44443 4689999999999999999999999886422121101 1 01235566554321 1222222
Q ss_pred HHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhH-HHHHHHHHHHh----hCCCEEEEeCCCCCC
Q 008534 252 YAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGE-RKRVCIGNEII----INPSLLFLDEPTSGL 326 (562)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGq-rqRv~IAraLl----~~P~iLlLDEPTsgL 326 (562)
+..... ... .++++.+-+. ...++.+ .+.+..++.++ .+++++++|+.++-+
T Consensus 176 ~~~~~g----~~~-------~~~l~~l~~~------------~~~~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~ 232 (343)
T 1v5w_A 176 IADRFN----VDH-------DAVLDNVLYA------------RAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALF 232 (343)
T ss_dssp HHHHTT----CCH-------HHHHHTEEEE------------ECCSTTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGH
T ss_pred HHHHcC----CCH-------HHHHhceeEe------------ecCCHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHH
Confidence 221111 111 1223322111 1223332 24555666666 568999999999866
Q ss_pred CHH------------HHHHHHHHHHHHHH-CCcEEEEEecC
Q 008534 327 DST------------TALRIVQMLQDIAE-AGKTVVTTIHQ 354 (562)
Q Consensus 327 D~~------------~~~~i~~~L~~l~~-~g~Tvii~tH~ 354 (562)
... ...+++..|+.+++ .+.+||++.|-
T Consensus 233 ~~~~~~~g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq~ 273 (343)
T 1v5w_A 233 RVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQM 273 (343)
T ss_dssp HHHCCGGGCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC
T ss_pred HHHhcccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEeec
Confidence 442 12455566666654 48899888885
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=97.95 E-value=2.2e-06 Score=83.59 Aligned_cols=40 Identities=28% Similarity=0.281 Sum_probs=34.5
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeC
Q 008534 178 GSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPY 223 (562)
Q Consensus 178 ~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~ 223 (562)
+..++|++++|+|+||||||||+++|+|. +|+|.+.+.|.
T Consensus 15 ~~~~~g~~i~i~G~~GsGKSTl~~~L~~~------~g~v~~~~~~~ 54 (230)
T 2vp4_A 15 AEGTQPFTVLIEGNIGSGKTTYLNHFEKY------KNDICLLTEPV 54 (230)
T ss_dssp TTTCCCEEEEEECSTTSCHHHHHHTTGGG------TTTEEEECCTH
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHHhc------cCCeEEEecCH
Confidence 34578999999999999999999999983 57888888764
|
| >3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=97.95 E-value=9e-06 Score=83.42 Aligned_cols=134 Identities=11% Similarity=0.113 Sum_probs=85.6
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHH
Q 008534 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKE 248 (562)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~~~igyV~Q~~~l~~~lTV~e 248 (562)
+.+.|+.+.+-+++|+++.|.|++|+|||||+..++.... ..| ..+.|+.=+ ++..+
T Consensus 54 G~~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a---~~g--------------~~vl~~slE------~s~~~ 110 (315)
T 3bh0_A 54 GFTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMS---DND--------------DVVNLHSLE------MGKKE 110 (315)
T ss_dssp SCHHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHH---TTT--------------CEEEEEESS------SCHHH
T ss_pred ChHHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH---HcC--------------CeEEEEECC------CCHHH
Confidence 3456788877799999999999999999999988874221 111 135555432 34443
Q ss_pred HHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 008534 249 TLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDS 328 (562)
Q Consensus 249 nl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~ 328 (562)
... ++......+.+.+..+ | ...||.++++|+..|...+.++++++.|+|...
T Consensus 111 l~~------------------R~~~~~~~i~~~~l~~---~---~~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~--- 163 (315)
T 3bh0_A 111 NIK------------------RLIVTAGSINAQKIKA---A---RRDFASEDWGKLSMAIGEISNSNINIFDKAGQS--- 163 (315)
T ss_dssp HHH------------------HHHHHHTTCCHHHHHS---C---HHHHCSSCHHHHHHHHHHHHTSCEEEECCSCCB---
T ss_pred HHH------------------HHHHHHcCCCHHHHhc---C---CCCCCHHHHHHHHHHHHHHhCCCEEEECCCCCC---
Confidence 322 1111111122111111 0 012899999999999999999999999998643
Q ss_pred HHHHHHHHHHHHHHHC-CcE--EEEEecC
Q 008534 329 TTALRIVQMLQDIAEA-GKT--VVTTIHQ 354 (562)
Q Consensus 329 ~~~~~i~~~L~~l~~~-g~T--vii~tH~ 354 (562)
..++...++++.++ |.. +|++-|-
T Consensus 164 --~~~i~~~i~~l~~~~~~~~~lVVID~l 190 (315)
T 3bh0_A 164 --VNYIWSKTRQTKRKNPGKRVIVMIDYL 190 (315)
T ss_dssp --HHHHHHHHHHHHHTSSSCCEEEEEECG
T ss_pred --HHHHHHHHHHHHHhcCCCCeEEEEeCc
Confidence 34566666776544 666 8877664
|
| >2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* | Back alignment and structure |
|---|
Probab=97.93 E-value=4.6e-05 Score=78.31 Aligned_cols=145 Identities=23% Similarity=0.297 Sum_probs=80.3
Q ss_pred eeeceE-EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHHHH
Q 008534 172 ILNGIT-GSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETL 250 (562)
Q Consensus 172 iL~~vs-~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~~~igyV~Q~~~l~~~lTV~enl 250 (562)
.|+.+- +-+++|+++.|.||+|+|||||+..++.....+...| | ....+.|+.-+..+ ....-.
T Consensus 95 ~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~g-----g------~~~~vlyi~~e~~~----~~~~l~ 159 (324)
T 2z43_A 95 ALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKG-----G------LSGKAVYIDTEGTF----RWERIE 159 (324)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGT-----C------CSCEEEEEESSSCC----CHHHHH
T ss_pred hHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccC-----C------CCCeEEEEECCCCC----CHHHHH
Confidence 444443 5689999999999999999999998886432221111 1 01235566544321 112111
Q ss_pred HHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChh-HHHHHHHHHHHh---hCCCEEEEeCCCCCC
Q 008534 251 TYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG-ERKRVCIGNEII---INPSLLFLDEPTSGL 326 (562)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGG-qrqRv~IAraLl---~~P~iLlLDEPTsgL 326 (562)
.+...+. ... .++++.+- + .+..+.. +.+.+..++.++ .+|+++++|+.++-.
T Consensus 160 ~~~~~~g----~~~-------~~~~~~l~--------~----~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~ 216 (324)
T 2z43_A 160 NMAKALG----LDI-------DNVMNNIY--------Y----IRAINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHF 216 (324)
T ss_dssp HHHHHTT----CCH-------HHHHHTEE--------E----EECCSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHH
T ss_pred HHHHHhC----CCH-------HHHhccEE--------E----EeCCCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHh
Confidence 1211111 111 11222111 1 1123333 335677788887 579999999999865
Q ss_pred CH--------HH----HHHHHHHHHHHHH-CCcEEEEEecC
Q 008534 327 DS--------TT----ALRIVQMLQDIAE-AGKTVVTTIHQ 354 (562)
Q Consensus 327 D~--------~~----~~~i~~~L~~l~~-~g~Tvii~tH~ 354 (562)
+. .. ..+++..|+.+++ .+.+||++.|-
T Consensus 217 ~~~~~~~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq~ 257 (324)
T 2z43_A 217 RAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQV 257 (324)
T ss_dssp HHHSCTTTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC
T ss_pred hhhhcCcccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcce
Confidence 33 11 2445556666654 38899988775
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=97.91 E-value=5.1e-05 Score=76.11 Aligned_cols=73 Identities=18% Similarity=0.324 Sum_probs=44.7
Q ss_pred ChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH----------HHHHHHHHHHHHHH----CCcEEEEEecCC---ChHH
Q 008534 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDST----------TALRIVQMLQDIAE----AGKTVVTTIHQP---SSRL 359 (562)
Q Consensus 297 SGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~----------~~~~i~~~L~~l~~----~g~Tvii~tH~~---~~~i 359 (562)
+++++.|..++.+...+|.+|++||+.+-++.. ....++..+..... .+..||.+|+++ ...+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l 176 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAA 176 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHH
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHH
Confidence 356777777888888899999999998776532 22234444443321 134567778864 3334
Q ss_pred HhcCCEEEEE
Q 008534 360 FHKFDKLILL 369 (562)
Q Consensus 360 ~~~~D~i~vL 369 (562)
.+-|++++.+
T Consensus 177 ~~R~~~~i~~ 186 (297)
T 3b9p_A 177 LRRFTKRVYV 186 (297)
T ss_dssp HHHCCEEEEC
T ss_pred HhhCCeEEEe
Confidence 4556665544
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=97.87 E-value=4.3e-06 Score=80.29 Aligned_cols=27 Identities=33% Similarity=0.481 Sum_probs=25.2
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 008534 181 NPGEVLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 181 ~~Ge~~alvGpsGsGKSTLl~~L~G~l 207 (562)
++|++++|+||||||||||++.|++.+
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 589999999999999999999999864
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=97.84 E-value=9.2e-06 Score=77.39 Aligned_cols=45 Identities=29% Similarity=0.381 Sum_probs=36.3
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEccCCCCCCC
Q 008534 178 GSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPH 243 (562)
Q Consensus 178 ~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~~~igyV~Q~~~l~~~ 243 (562)
-++++|++++|+|++|||||||+++|++.+. .+.+++||+.+++.
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~---------------------~~~~i~~D~~~~~~ 60 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLAKNLQKHLP---------------------NCSVISQDDFFKPE 60 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHHHHHHTTST---------------------TEEEEEGGGGBCCG
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHhcC---------------------CcEEEeCCccccCH
Confidence 3567899999999999999999999997431 26778888777653
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=97.78 E-value=1.6e-05 Score=81.07 Aligned_cols=63 Identities=13% Similarity=0.093 Sum_probs=42.4
Q ss_pred CChhHHHHHHHHHHHh--hCCCEEEEeCCCCCCCHHH-HHHHHHHHHHHHHC-Cc--EEEEEecCCChHHHhcCCEE
Q 008534 296 VSGGERKRVCIGNEII--INPSLLFLDEPTSGLDSTT-ALRIVQMLQDIAEA-GK--TVVTTIHQPSSRLFHKFDKL 366 (562)
Q Consensus 296 LSGGqrqRv~IAraLl--~~P~iLlLDEPTsgLD~~~-~~~i~~~L~~l~~~-g~--Tvii~tH~~~~~i~~~~D~i 366 (562)
+|+|++ .+++.+. ..|.++++ +.+|... ...+.+.+.++.+. |. .+.+++|+-. .+..++|.|
T Consensus 101 ~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~-~v~~l~~~i 169 (301)
T 1ega_A 101 WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGL-NVDTIAAIV 169 (301)
T ss_dssp CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTT-THHHHHHHH
T ss_pred CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCC-CHHHHHHHH
Confidence 898886 5666676 68999999 7889876 66777888888653 43 5555666633 244444443
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=97.77 E-value=9.1e-06 Score=78.13 Aligned_cols=28 Identities=29% Similarity=0.469 Sum_probs=25.2
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 008534 180 VNPGEVLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 180 i~~Ge~~alvGpsGsGKSTLl~~L~G~l 207 (562)
..+|++++|+||||||||||++.|++..
T Consensus 16 ~~~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 16 FQGRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 3489999999999999999999999854
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=97.70 E-value=6.4e-05 Score=80.55 Aligned_cols=35 Identities=29% Similarity=0.256 Sum_probs=27.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEE
Q 008534 182 PGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITY 218 (562)
Q Consensus 182 ~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i 218 (562)
++.+++++||+||||||++..|++.+. ..++.|.+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~--~~G~kVll 130 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYK--KRGYKVGL 130 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHH--HTTCCEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH--HcCCeEEE
Confidence 578999999999999999999997543 22444444
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=97.68 E-value=7.2e-06 Score=78.20 Aligned_cols=41 Identities=39% Similarity=0.297 Sum_probs=32.7
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEe
Q 008534 180 VNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP 222 (562)
Q Consensus 180 i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~ 222 (562)
.++|++++|+|+||||||||+++|++.+. +.+|.|.+.+.+
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~--~~~~~v~~~~~d 59 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLR--EQGISVCVFHMD 59 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHH--HTTCCEEEEEGG
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHh--hcCCeEEEeccC
Confidence 57899999999999999999999998542 235777665543
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=97.65 E-value=2.3e-06 Score=82.41 Aligned_cols=56 Identities=25% Similarity=0.303 Sum_probs=41.5
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCC-CCCccEEEE--------CCEeCCh-----hccCcEEEEccCC
Q 008534 183 GEVLALMGPSGSGKTTLLNLLSGRLME-PTVGGSITY--------NDHPYSK-----SLKSKIGFVTQDD 238 (562)
Q Consensus 183 Ge~~alvGpsGsGKSTLl~~L~G~l~~-~~~~G~I~i--------~G~~~~~-----~~~~~igyV~Q~~ 238 (562)
+.+++|+|||||||||+.++|++.+-- ..+.|.+.. +|.++.. .+++.+++++|++
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 74 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVST 74 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeecc
Confidence 568999999999999999999974311 135687776 6766542 3566788898864
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.64 E-value=3.4e-06 Score=87.11 Aligned_cols=59 Identities=19% Similarity=0.244 Sum_probs=43.7
Q ss_pred ccceeeceEEEEeCCe------EEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEccCCCCCC
Q 008534 169 EKDILNGITGSVNPGE------VLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFP 242 (562)
Q Consensus 169 ~~~iL~~vs~~i~~Ge------~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~~~igyV~Q~~~l~~ 242 (562)
.+..|++++..+..++ ++||+||||||||||+++|.+.+...+.+| .++++.+|...++
T Consensus 72 ~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~---------------~v~~i~~D~f~~~ 136 (321)
T 3tqc_A 72 ARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHP---------------NVEVITTDGFLYS 136 (321)
T ss_dssp HHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCC---------------CEEEEEGGGGBCC
T ss_pred chHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCC---------------eEEEEeecccccc
Confidence 4567888888887776 999999999999999999998553211122 3667777766554
|
| >3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=97.62 E-value=5.4e-06 Score=91.62 Aligned_cols=43 Identities=33% Similarity=0.510 Sum_probs=35.3
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCcc-EE-EECCEeC
Q 008534 179 SVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGG-SI-TYNDHPY 223 (562)
Q Consensus 179 ~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G-~I-~i~G~~~ 223 (562)
.+++|++++|+|+||||||||+++|+|.+. +.+| .| ++||.++
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~--~~~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLM--EMGGRCVTLLDGDIV 409 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHH--TTCSSCEEEESSHHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhc--ccCCceEEEECCcHH
Confidence 578999999999999999999999999663 3344 67 4888654
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.61 E-value=1.3e-05 Score=78.29 Aligned_cols=153 Identities=14% Similarity=0.123 Sum_probs=77.4
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCC
Q 008534 180 VNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLP 259 (562)
Q Consensus 180 i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~ 259 (562)
+..|+.++|.||+||||||++.++..... ...|. ...++++.+.|......++.+++.........
T Consensus 73 i~~g~~~~i~g~TGsGKTt~~~~~~~~~~--~~~~~------------~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~ 138 (235)
T 3llm_A 73 ISQNSVVIIRGATGCGKTTQVPQFILDDF--IQNDR------------AAECNIVVTQPRRISAVSVAERVAFERGEEPG 138 (235)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHHHHHH--HHTTC------------GGGCEEEEEESSHHHHHHHHHHHHHTTTCCTT
T ss_pred HhcCCEEEEEeCCCCCcHHhHHHHHhcch--hhcCC------------CCceEEEEeccchHHHHHHHHHHHHHhccccC
Confidence 35799999999999999999887763110 00110 12355666666544344555555432110000
Q ss_pred CCccHHHHHHHHHHHHHHcCCCccccccc--cCcccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCC-CCCHHHHHHHHH
Q 008534 260 NTLTKQQKEKRAIDVINELGLERCQDTMI--GGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTS-GLDSTTALRIVQ 336 (562)
Q Consensus 260 ~~~~~~~~~~~v~~~l~~lgL~~~~~t~v--g~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTs-gLD~~~~~~i~~ 336 (562)
. ..|.....+... .+..+--.+-|.-.+.. ...+.+-+++++||.-. ++|......+++
T Consensus 139 ~----------------~~g~~~~~~~~~~~~~~~Ivv~Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~~l~ 200 (235)
T 3llm_A 139 K----------------SCGYSVRFESILPRPHASIMFCTVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVLR 200 (235)
T ss_dssp S----------------SEEEEETTEEECCCSSSEEEEEEHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHHHHH
T ss_pred c----------------eEEEeechhhccCCCCCeEEEECHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHHHHH
Confidence 0 000000000000 00001112445555542 33578999999999976 687766655555
Q ss_pred HHHHHHHCCcEEEEEecCCChHHHhcCC
Q 008534 337 MLQDIAEAGKTVVTTIHQPSSRLFHKFD 364 (562)
Q Consensus 337 ~L~~l~~~g~Tvii~tH~~~~~i~~~~D 364 (562)
.+......-++++++.--+...+.++++
T Consensus 201 ~i~~~~~~~~~il~SAT~~~~~~~~~~~ 228 (235)
T 3llm_A 201 DVVQAYPEVRIVLMSATIDTSMFCEYFF 228 (235)
T ss_dssp HHHHHCTTSEEEEEECSSCCHHHHHHTT
T ss_pred HHHhhCCCCeEEEEecCCCHHHHHHHcC
Confidence 5444333335666664433443444443
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=97.59 E-value=7e-05 Score=68.34 Aligned_cols=31 Identities=26% Similarity=0.472 Sum_probs=25.6
Q ss_pred eceEEEEeCCeEEEEECCCCCcHHHHHHHHHc
Q 008534 174 NGITGSVNPGEVLALMGPSGSGKTTLLNLLSG 205 (562)
Q Consensus 174 ~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G 205 (562)
++.++.+.+| +++|+|||||||||++++|.-
T Consensus 15 ~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred cceEEEcCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 4455666666 999999999999999999973
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00011 Score=74.51 Aligned_cols=29 Identities=28% Similarity=0.560 Sum_probs=25.9
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 008534 179 SVNPGEVLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 179 ~i~~Ge~~alvGpsGsGKSTLl~~L~G~l 207 (562)
.+.++..+.|.||+|+|||||+++|++.+
T Consensus 45 ~~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 45 GMTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 46788999999999999999999999743
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=97.57 E-value=6.5e-06 Score=76.59 Aligned_cols=40 Identities=33% Similarity=0.354 Sum_probs=30.9
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCcc--EEEECCEeC
Q 008534 181 NPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGG--SITYNDHPY 223 (562)
Q Consensus 181 ~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G--~I~i~G~~~ 223 (562)
++|++++|+|++||||||+.++|++.+. + .| .|.+++..+
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~--~-~g~~~i~~d~~~~ 44 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLV--C-HGIPCYTLDGDNI 44 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHH--H-TTCCEEEEEHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHh--h-CCCcEEEECChHH
Confidence 4789999999999999999999998542 1 35 566666544
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=97.53 E-value=2.9e-05 Score=71.31 Aligned_cols=26 Identities=35% Similarity=0.561 Sum_probs=23.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 008534 182 PGEVLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 182 ~Ge~~alvGpsGsGKSTLl~~L~G~l 207 (562)
.|++++|+||||||||||+++|++.+
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999999854
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=97.49 E-value=3.4e-05 Score=79.35 Aligned_cols=27 Identities=22% Similarity=0.501 Sum_probs=23.9
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 008534 181 NPGEVLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 181 ~~Ge~~alvGpsGsGKSTLl~~L~G~l 207 (562)
.++..+.|.||+|+|||||++.+++.+
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~ 69 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKL 69 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 457899999999999999999999743
|
| >3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A | Back alignment and structure |
|---|
Probab=97.44 E-value=1.2e-05 Score=84.82 Aligned_cols=51 Identities=18% Similarity=0.300 Sum_probs=44.6
Q ss_pred eEEEEeEEEEEeecccCCccccceee--------------ceEEEEeCCeEEEEECCCCCcHHHHHHHHHcC
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILN--------------GITGSVNPGEVLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~--------------~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.+.|+||++.|+ .++.+|+ |+.+.+.+|+.++|+||+|+|||||++.|++.
T Consensus 133 ri~Fe~ltp~yP-------~er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~ 197 (422)
T 3ice_A 133 KILFENLTPLHA-------NSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQS 197 (422)
T ss_dssp SCCTTTSCEESC-------CSBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHH
T ss_pred CceeccccccCC-------CCccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHH
Confidence 477999999873 2456888 89999999999999999999999999999863
|
| >1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00053 Score=71.62 Aligned_cols=35 Identities=31% Similarity=0.422 Sum_probs=28.7
Q ss_pred ceeeceE--EEEeCCeEEEEECCCCCcHHHHHHHHHc
Q 008534 171 DILNGIT--GSVNPGEVLALMGPSGSGKTTLLNLLSG 205 (562)
Q Consensus 171 ~iL~~vs--~~i~~Ge~~alvGpsGsGKSTLl~~L~G 205 (562)
+.|+.+- +=+++|+++.|.||+|+|||||...++.
T Consensus 49 ~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~ 85 (356)
T 1u94_A 49 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIA 85 (356)
T ss_dssp HHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4555553 3589999999999999999999988875
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.32 E-value=0.0012 Score=64.14 Aligned_cols=23 Identities=35% Similarity=0.573 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~l 207 (562)
.++|+|++|+|||||++.|+|..
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 58999999999999999999854
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00011 Score=78.44 Aligned_cols=30 Identities=27% Similarity=0.531 Sum_probs=27.0
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 008534 178 GSVNPGEVLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 178 ~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l 207 (562)
+++.+|++++|+|||||||||||++|++.+
T Consensus 21 ~~~~~~~~~~i~G~nG~GKstll~ai~~~~ 50 (430)
T 1w1w_A 21 VGFGESNFTSIIGPNGSGKSNMMDAISFVL 50 (430)
T ss_dssp EECTTCSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHHhhh
Confidence 456789999999999999999999999854
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=97.28 E-value=1.9e-05 Score=81.83 Aligned_cols=51 Identities=22% Similarity=0.296 Sum_probs=40.4
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCE
Q 008534 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDH 221 (562)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~ 221 (562)
.+.+++++++.+.+|.+++|+|++|+|||||++.|++.+. +.+|.|.+-+.
T Consensus 42 ~~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~--~~~~~v~v~~~ 92 (341)
T 2p67_A 42 STQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLI--REGLKVAVIAV 92 (341)
T ss_dssp HHHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHH--HTTCCEEEEEE
T ss_pred HHHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHH--hcCCeEEEEee
Confidence 3468899999999999999999999999999999998542 23455544333
|
| >3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A* | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00028 Score=67.59 Aligned_cols=31 Identities=26% Similarity=0.472 Sum_probs=25.6
Q ss_pred eceEEEEeCCeEEEEECCCCCcHHHHHHHHHc
Q 008534 174 NGITGSVNPGEVLALMGPSGSGKTTLLNLLSG 205 (562)
Q Consensus 174 ~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G 205 (562)
.+.++.+.+| +++|+|||||||||++.+|.-
T Consensus 15 ~~~~i~f~~~-~~~I~G~NgsGKStil~ai~~ 45 (203)
T 3qks_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (203)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred cceEEEeCCC-eEEEEcCCCCCHHHHHHHHHH
Confidence 3455666665 999999999999999999874
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00023 Score=76.14 Aligned_cols=69 Identities=17% Similarity=0.276 Sum_probs=38.9
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCCC----------CCCccEEEECCEeCC----hhccCcEEEEccCCCCCCCCCHHHH
Q 008534 184 EVLALMGPSGSGKTTLLNLLSGRLME----------PTVGGSITYNDHPYS----KSLKSKIGFVTQDDVLFPHLTVKET 249 (562)
Q Consensus 184 e~~alvGpsGsGKSTLl~~L~G~l~~----------~~~~G~I~i~G~~~~----~~~~~~igyV~Q~~~l~~~lTV~en 249 (562)
-.++|+|+||+|||||++.|+|.... .+..|.+.++|.++. ...++..++.+|....|..+++.++
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~ 260 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDS 260 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHHH
Confidence 37999999999999999999985320 134688999998642 1233344455555445544444444
Q ss_pred HHH
Q 008534 250 LTY 252 (562)
Q Consensus 250 l~~ 252 (562)
+..
T Consensus 261 i~~ 263 (439)
T 1mky_A 261 IEK 263 (439)
T ss_dssp HHH
T ss_pred Hhh
Confidence 443
|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
Probab=97.22 E-value=4.5e-05 Score=84.13 Aligned_cols=50 Identities=28% Similarity=0.336 Sum_probs=39.7
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEe
Q 008534 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP 222 (562)
Q Consensus 170 ~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~ 222 (562)
..+++++++++ +|+.++|+||||+|||||+++|++.+. ...|.|.++|..
T Consensus 96 ~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~--~~~~~i~~~~~~ 145 (543)
T 3m6a_A 96 YLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLG--RKFVRISLGGVR 145 (543)
T ss_dssp HHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHT--CEEEEECCCC--
T ss_pred HHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcC--CCeEEEEecccc
Confidence 45778888888 899999999999999999999998553 335778777643
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00019 Score=68.56 Aligned_cols=45 Identities=11% Similarity=0.164 Sum_probs=31.0
Q ss_pred hCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHHCCcE-EEEEecCCC
Q 008534 312 INPSLLFLDEPTSGL-DSTTALRIVQMLQDIAEAGKT-VVTTIHQPS 356 (562)
Q Consensus 312 ~~P~iLlLDEPTsgL-D~~~~~~i~~~L~~l~~~g~T-vii~tH~~~ 356 (562)
.+|.+|++||.-.-- +......+.+.+......+.. +|++++...
T Consensus 103 ~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~ 149 (242)
T 3bos_A 103 EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASP 149 (242)
T ss_dssp GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCT
T ss_pred cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCH
Confidence 468999999965432 233367788888887666655 788777543
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00016 Score=70.76 Aligned_cols=36 Identities=33% Similarity=0.409 Sum_probs=26.1
Q ss_pred eeeceEEEEe---CCeEEEEECCCCCcHHHHHHHHHcCC
Q 008534 172 ILNGITGSVN---PGEVLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 172 iL~~vs~~i~---~Ge~~alvGpsGsGKSTLl~~L~G~l 207 (562)
-|.++++++. +|.+++|.||+||||||+++.|+..+
T Consensus 12 ~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l 50 (229)
T 4eaq_A 12 DLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRL 50 (229)
T ss_dssp --------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4777777776 99999999999999999999999865
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=97.10 E-value=0.0009 Score=68.05 Aligned_cols=45 Identities=13% Similarity=0.199 Sum_probs=34.7
Q ss_pred hhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHHCCcEEEEEecCC
Q 008534 311 IINPSLLFLDEPTS-GLDSTTALRIVQMLQDIAEAGKTVVTTIHQP 355 (562)
Q Consensus 311 l~~P~iLlLDEPTs-gLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~ 355 (562)
+.+|.+||+||+-. ..+...+..+...+..+.+.+..+|++++.+
T Consensus 96 ~~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~ 141 (324)
T 1l8q_A 96 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRH 141 (324)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred hcCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 45799999999865 2344778888889888877777788887754
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00059 Score=67.77 Aligned_cols=27 Identities=33% Similarity=0.637 Sum_probs=23.6
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcC
Q 008534 180 VNPGEVLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 180 i~~Ge~~alvGpsGsGKSTLl~~L~G~ 206 (562)
+.++.-+.|.||+|+|||||++.|+..
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 356677999999999999999999974
|
| >2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A* | Back alignment and structure |
|---|
Probab=97.09 E-value=0.0017 Score=66.18 Aligned_cols=34 Identities=26% Similarity=0.407 Sum_probs=28.2
Q ss_pred eeeceE-EEEeCCeEEEEECCCCCcHHHHHHHHHc
Q 008534 172 ILNGIT-GSVNPGEVLALMGPSGSGKTTLLNLLSG 205 (562)
Q Consensus 172 iL~~vs-~~i~~Ge~~alvGpsGsGKSTLl~~L~G 205 (562)
.|+.+- +-+++|+++.|.||+|+|||||...++.
T Consensus 86 ~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 86 ELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp HHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred hHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 444443 4689999999999999999999988874
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00068 Score=63.85 Aligned_cols=24 Identities=42% Similarity=0.526 Sum_probs=21.4
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 008534 184 EVLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 184 e~~alvGpsGsGKSTLl~~L~G~l 207 (562)
..+.|.||+|+|||||++.|+..+
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 678999999999999999999643
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.06 E-value=0.00013 Score=75.91 Aligned_cols=41 Identities=22% Similarity=0.314 Sum_probs=31.2
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeC
Q 008534 181 NPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPY 223 (562)
Q Consensus 181 ~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~ 223 (562)
+++.+++|+|++|||||||++.|+|.+. +.+|.|.+.+.+.
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~--~~~~~v~V~~~dp 112 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLT--ERGHKLSVLAVDP 112 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHH--HTTCCEEEEECCC
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhh--hcCCeEEEEeecC
Confidence 4678999999999999999999998542 2356666555443
|
| >3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=97.06 E-value=0.0018 Score=69.54 Aligned_cols=36 Identities=14% Similarity=0.077 Sum_probs=30.3
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHc
Q 008534 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSG 205 (562)
Q Consensus 170 ~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G 205 (562)
.+-|+.+..-+++|+++.|.|++|+|||||+--++.
T Consensus 184 ~~~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~ 219 (444)
T 3bgw_A 184 FTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 219 (444)
T ss_dssp CHHHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHH
T ss_pred cHHHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHH
Confidence 345666666689999999999999999999877774
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00026 Score=66.27 Aligned_cols=32 Identities=19% Similarity=0.352 Sum_probs=26.2
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHHcC
Q 008534 175 GITGSVNPGEVLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 175 ~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~ 206 (562)
++|+...+|..++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57888889999999999999999999999964
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=97.01 E-value=0.00029 Score=66.96 Aligned_cols=29 Identities=31% Similarity=0.456 Sum_probs=25.2
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 008534 179 SVNPGEVLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 179 ~i~~Ge~~alvGpsGsGKSTLl~~L~G~l 207 (562)
...+|.+++|+||||||||||.+.|+..+
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 35689999999999999999999999744
|
| >2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=96.94 E-value=0.0023 Score=68.51 Aligned_cols=132 Identities=11% Similarity=0.156 Sum_probs=81.5
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHH
Q 008534 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKE 248 (562)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~~~igyV~Q~~~l~~~lTV~e 248 (562)
+.+-|+.+.+-+++|+++.|.|++|+|||||+.-++.... ...| ..+.|+.=+ ++..+
T Consensus 186 G~~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a--~~~g--------------~~vl~~slE------~~~~~ 243 (444)
T 2q6t_A 186 GFKELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAA--LKEG--------------VGVGIYSLE------MPAAQ 243 (444)
T ss_dssp SCHHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHH--HTTC--------------CCEEEEESS------SCHHH
T ss_pred CCHhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHH--HhCC--------------CeEEEEECC------CCHHH
Confidence 3456777777799999999999999999999988885321 0011 124554432 33322
Q ss_pred HHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 008534 249 TLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDS 328 (562)
Q Consensus 249 nl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~ 328 (562)
.. .+.... ..+++.. ... ...|+..+.+|+.-|...+.+.++++.|+|.. +.
T Consensus 244 l~------------------~R~~~~--~~~i~~~--~l~----~g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~--s~ 295 (444)
T 2q6t_A 244 LT------------------LRMMCS--EARIDMN--RVR----LGQLTDRDFSRLVDVASRLSEAPIYIDDTPDL--TL 295 (444)
T ss_dssp HH------------------HHHHHH--HTTCCTT--TCC----GGGCCHHHHHHHHHHHHHHHTSCEEEECCTTC--BH
T ss_pred HH------------------HHHHHH--HcCCCHH--HHh----CCCCCHHHHHHHHHHHHHHhcCCEEEECCCCC--CH
Confidence 11 111111 1233211 110 12599999999999988888889999887743 33
Q ss_pred HHHHHHHHHHHHHHH-CCcEEEEEec
Q 008534 329 TTALRIVQMLQDIAE-AGKTVVTTIH 353 (562)
Q Consensus 329 ~~~~~i~~~L~~l~~-~g~Tvii~tH 353 (562)
.++...++++.+ .+..+|++-+
T Consensus 296 ---~~l~~~~~~l~~~~~~~lIvID~ 318 (444)
T 2q6t_A 296 ---MEVRARARRLVSQNQVGLIIIDY 318 (444)
T ss_dssp ---HHHHHHHHHHHHHSCCCEEEEEC
T ss_pred ---HHHHHHHHHHHHHcCCCEEEEcC
Confidence 345556666653 4667777754
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=96.91 E-value=0.00022 Score=68.14 Aligned_cols=43 Identities=26% Similarity=0.211 Sum_probs=33.5
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCcc--EEEECCEe
Q 008534 178 GSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGG--SITYNDHP 222 (562)
Q Consensus 178 ~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G--~I~i~G~~ 222 (562)
..+++|.+++|+|++||||||+.+.|++.+. +..| .+.++|..
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~--~~~g~~~~~~~~d~ 64 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLV--RDRRVHAYRLDGDN 64 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHH--HHHCCCEEEECHHH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhc--cccCCcEEEECChH
Confidence 3457899999999999999999999997542 2346 77777543
|
| >2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* | Back alignment and structure |
|---|
Probab=96.89 E-value=0.0025 Score=62.16 Aligned_cols=53 Identities=28% Similarity=0.382 Sum_probs=41.4
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEec---------CCChHHHhcCCEEEEEc
Q 008534 313 NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIH---------QPSSRLFHKFDKLILLG 370 (562)
Q Consensus 313 ~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH---------~~~~~i~~~~D~i~vL~ 370 (562)
+|+++++||.-. |+. ++++.++.+++.|.+||++-| ..+..+..+||+|.-|.
T Consensus 89 ~~dvViIDEaQ~-l~~----~~ve~l~~L~~~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDD----RICEVANILAENGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCT----HHHHHHHHHHHTTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcH----HHHHHHHHHHhCCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 589999999964 654 355666777767999999999 55567778999998875
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=96.88 E-value=0.00088 Score=69.99 Aligned_cols=31 Identities=23% Similarity=0.448 Sum_probs=27.4
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHH
Q 008534 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLS 204 (562)
Q Consensus 173 L~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~ 204 (562)
+++..+++.+| +++|+|||||||||+|.+|.
T Consensus 16 ~~~~~i~f~~g-l~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 16 HVNSRIKFEKG-IVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEEECCSE-EEEEEECTTSSHHHHHHHHH
T ss_pred ccceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 46777888886 99999999999999999986
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=96.88 E-value=0.0005 Score=63.23 Aligned_cols=26 Identities=38% Similarity=0.694 Sum_probs=22.7
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcC
Q 008534 181 NPGEVLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 181 ~~Ge~~alvGpsGsGKSTLl~~L~G~ 206 (562)
++|..++|+|++|+|||||++.|+|.
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999999999984
|
| >3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.87 E-value=0.0049 Score=63.90 Aligned_cols=26 Identities=31% Similarity=0.625 Sum_probs=22.6
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcC
Q 008534 181 NPGEVLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 181 ~~Ge~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.+..-+.|.||+|+|||||++.|+..
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~ 140 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQ 140 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHH
Confidence 34567999999999999999999964
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.83 E-value=0.0046 Score=60.18 Aligned_cols=26 Identities=31% Similarity=0.470 Sum_probs=22.0
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcC
Q 008534 181 NPGEVLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 181 ~~Ge~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.+..-+.|.||+|+|||||++.|+..
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHH
Confidence 34456889999999999999999963
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=96.81 E-value=0.00026 Score=66.65 Aligned_cols=37 Identities=30% Similarity=0.430 Sum_probs=31.8
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcC
Q 008534 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~ 206 (562)
-..+++++|+..++++ ++|+|++|+|||||++.+.+.
T Consensus 12 ~~~~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 12 FSSVLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp -CHHHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSCC
T ss_pred HHHHHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhcC
Confidence 3468999999988884 789999999999999999863
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=96.80 E-value=0.00029 Score=75.32 Aligned_cols=47 Identities=21% Similarity=0.047 Sum_probs=38.8
Q ss_pred eceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCC
Q 008534 174 NGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS 224 (562)
Q Consensus 174 ~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~ 224 (562)
++++++ +|++++++|+|||||||++..|++.+. ..+|.|.+.+.++.
T Consensus 91 ~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~--~~g~~Vllvd~D~~ 137 (425)
T 2ffh_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYK--GKGRRPLLVAADTQ 137 (425)
T ss_dssp CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHH--TTTCCEEEEECCSS
T ss_pred ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHH--HcCCeEEEeecccc
Confidence 677777 899999999999999999999998653 34688888776653
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.80 E-value=0.00052 Score=64.73 Aligned_cols=21 Identities=29% Similarity=0.544 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 008534 185 VLALMGPSGSGKTTLLNLLSG 205 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G 205 (562)
+++|+|+|||||||+.+.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999997
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=96.77 E-value=0.00059 Score=63.69 Aligned_cols=35 Identities=34% Similarity=0.507 Sum_probs=21.1
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcC
Q 008534 171 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 171 ~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.+++++++..++. .++|+|++|+|||||++.+.+.
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHHS
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999998888 6799999999999999999974
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.71 E-value=0.00011 Score=76.88 Aligned_cols=46 Identities=33% Similarity=0.530 Sum_probs=33.7
Q ss_pred ceeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcC
Q 008534 147 PIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 147 ~~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~ 206 (562)
+..+.+.|++..| ..+.++++++|+| +|+|++|+|||||++.|.|.
T Consensus 15 ~~~v~~~~l~~~~--------~~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~ 60 (361)
T 2qag_A 15 PGYVGFANLPNQV--------HRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLT 60 (361)
T ss_dssp ------CCHHHHH--------HTHHHHHCCEECE------EECCCTTSCHHHHHHHHTTC
T ss_pred CceEEeccchHHh--------CCeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCC
Confidence 3467788877654 2456889999987 99999999999999999874
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=96.68 E-value=0.00042 Score=68.40 Aligned_cols=47 Identities=23% Similarity=0.390 Sum_probs=35.6
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeC
Q 008534 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPY 223 (562)
Q Consensus 172 iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~ 223 (562)
++++.. ..+++.++.|+|+|||||||+.+.|+..+. .+.+.+++..+
T Consensus 22 ~~~~~~-~~~~~~~i~l~G~~GsGKSTla~~L~~~l~----~~~~~~~~D~~ 68 (253)
T 2p5t_B 22 LTRGKK-SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ----GNIVIIDGDSF 68 (253)
T ss_dssp HHTTCC-CCSSCEEEEEESCGGGTTHHHHHHHHHHTT----TCCEEECGGGG
T ss_pred HHccCC-cccCCeEEEEECCCCCCHHHHHHHHHHhcC----CCcEEEecHHH
Confidence 444444 567789999999999999999999997542 24577777544
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.63 E-value=0.00098 Score=61.67 Aligned_cols=25 Identities=32% Similarity=0.642 Sum_probs=22.5
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHc
Q 008534 181 NPGEVLALMGPSGSGKTTLLNLLSG 205 (562)
Q Consensus 181 ~~Ge~~alvGpsGsGKSTLl~~L~G 205 (562)
.+|.+++|+|++||||||+.+.|+.
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999999999985
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0011 Score=61.77 Aligned_cols=27 Identities=44% Similarity=0.549 Sum_probs=24.6
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 008534 181 NPGEVLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 181 ~~Ge~~alvGpsGsGKSTLl~~L~G~l 207 (562)
.+|.+++|+|++||||||+.+.|+..+
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l 37 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLL 37 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 478999999999999999999999754
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* | Back alignment and structure |
|---|
Probab=96.58 E-value=0.00024 Score=74.05 Aligned_cols=37 Identities=27% Similarity=0.451 Sum_probs=33.6
Q ss_pred ceeeceEEEEeCCeE--EEEECCCCCcHHHHHHHHHcCC
Q 008534 171 DILNGITGSVNPGEV--LALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 171 ~iL~~vs~~i~~Ge~--~alvGpsGsGKSTLl~~L~G~l 207 (562)
.+++.+++.+++|++ ++|+|++||||||+.++|++.+
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 478889999999998 9999999999999999999853
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=96.56 E-value=0.0012 Score=59.97 Aligned_cols=22 Identities=41% Similarity=0.742 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|++|+|||||++.++|.
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999984
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.54 E-value=0.00098 Score=62.91 Aligned_cols=24 Identities=29% Similarity=0.470 Sum_probs=21.8
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcC
Q 008534 183 GEVLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 183 Ge~~alvGpsGsGKSTLl~~L~G~ 206 (562)
..+++|+|++||||||+.+.|++.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999974
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=96.54 E-value=0.00025 Score=72.23 Aligned_cols=47 Identities=21% Similarity=0.147 Sum_probs=35.8
Q ss_pred ec-eEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeC
Q 008534 174 NG-ITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPY 223 (562)
Q Consensus 174 ~~-vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~ 223 (562)
++ ++++.+ |++++++|++|+||||++..|++.+. ..+|+|.+.+.+.
T Consensus 89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~--~~g~~v~l~~~D~ 136 (297)
T 1j8m_F 89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYK--KKGFKVGLVGADV 136 (297)
T ss_dssp CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHH--HTTCCEEEEECCC
T ss_pred ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEEecCC
Confidence 45 677766 99999999999999999999998543 2356666655443
|
| >3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* | Back alignment and structure |
|---|
Probab=96.52 E-value=0.008 Score=73.90 Aligned_cols=27 Identities=33% Similarity=0.541 Sum_probs=25.5
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHc
Q 008534 179 SVNPGEVLALMGPSGSGKTTLLNLLSG 205 (562)
Q Consensus 179 ~i~~Ge~~alvGpsGsGKSTLl~~L~G 205 (562)
=+++|+++.|.||+|+|||||+..++.
T Consensus 728 Gl~~G~lVlI~G~PG~GKTtLal~lA~ 754 (1706)
T 3cmw_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIA 754 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CcCCCceEEEECCCCCCcHHHHHHHHH
Confidence 499999999999999999999999986
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0015 Score=60.00 Aligned_cols=25 Identities=28% Similarity=0.449 Sum_probs=22.6
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 008534 183 GEVLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 183 Ge~~alvGpsGsGKSTLl~~L~G~l 207 (562)
|.++.|+|++||||||+.+.|+..+
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 5689999999999999999999754
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0014 Score=59.44 Aligned_cols=22 Identities=32% Similarity=0.369 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
+++|+|++||||||+.+.|+..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999864
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0022 Score=65.72 Aligned_cols=26 Identities=31% Similarity=0.427 Sum_probs=22.9
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcC
Q 008534 181 NPGEVLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 181 ~~Ge~~alvGpsGsGKSTLl~~L~G~ 206 (562)
..+..+.|.||+|+|||||++.++..
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHH
Confidence 45678999999999999999999864
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.38 E-value=0.00036 Score=71.68 Aligned_cols=39 Identities=26% Similarity=0.605 Sum_probs=34.9
Q ss_pred ccceeeceEEEEeCCeE--EEEECCCCCcHHHHHHHHHcCC
Q 008534 169 EKDILNGITGSVNPGEV--LALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~--~alvGpsGsGKSTLl~~L~G~l 207 (562)
...+++.++..++.|++ +.+.||+|+||||+++++++.+
T Consensus 30 ~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l 70 (340)
T 1sxj_C 30 QNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREI 70 (340)
T ss_dssp CHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 34688899999999999 9999999999999999999854
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=96.34 E-value=0.0012 Score=64.66 Aligned_cols=34 Identities=29% Similarity=0.653 Sum_probs=24.1
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 008534 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 172 iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l 207 (562)
.++++++.+++| +.|.||+|+|||||+++|++..
T Consensus 36 ~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 36 RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEA 69 (257)
T ss_dssp GC-----CCCCE--EEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHc
Confidence 455555555555 8899999999999999999743
|
| >1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.34 E-value=0.0018 Score=62.85 Aligned_cols=27 Identities=26% Similarity=0.416 Sum_probs=23.9
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcC
Q 008534 180 VNPGEVLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 180 i~~Ge~~alvGpsGsGKSTLl~~L~G~ 206 (562)
-.+|.+++|+|++||||||+.+.|++.
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~ 39 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKD 39 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 467889999999999999999999973
|
| >1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A | Back alignment and structure |
|---|
Probab=96.31 E-value=0.0021 Score=59.38 Aligned_cols=24 Identities=29% Similarity=0.403 Sum_probs=21.9
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcC
Q 008534 183 GEVLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 183 Ge~~alvGpsGsGKSTLl~~L~G~ 206 (562)
|.+++|.|++||||||+.+.|+-.
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~ 26 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDN 26 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 678999999999999999999853
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.30 E-value=0.002 Score=59.11 Aligned_cols=22 Identities=41% Similarity=0.742 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|++|+|||||++.|+|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999973
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=96.28 E-value=0.002 Score=59.47 Aligned_cols=22 Identities=50% Similarity=0.685 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|++|+|||||++.++|.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999973
|
| >2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} | Back alignment and structure |
|---|
Probab=96.27 E-value=0.0019 Score=59.86 Aligned_cols=25 Identities=28% Similarity=0.432 Sum_probs=22.7
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHc
Q 008534 181 NPGEVLALMGPSGSGKTTLLNLLSG 205 (562)
Q Consensus 181 ~~Ge~~alvGpsGsGKSTLl~~L~G 205 (562)
+++.++.|+|++||||||+.+.|+.
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999999985
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=96.21 E-value=0.0023 Score=59.94 Aligned_cols=38 Identities=39% Similarity=0.412 Sum_probs=27.2
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCCC-CCCccEEEECCE
Q 008534 184 EVLALMGPSGSGKTTLLNLLSGRLME-PTVGGSITYNDH 221 (562)
Q Consensus 184 e~~alvGpsGsGKSTLl~~L~G~l~~-~~~~G~I~i~G~ 221 (562)
.+++|+|+||||||||++.|.+.+.. ...-|.|..++.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~ 45 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHH 45 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCC
Confidence 58999999999999999999975421 112356665543
|
| >3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A | Back alignment and structure |
|---|
Probab=96.19 E-value=0.0025 Score=57.53 Aligned_cols=19 Identities=42% Similarity=0.726 Sum_probs=18.3
Q ss_pred EEEEECCCCCcHHHHHHHH
Q 008534 185 VLALMGPSGSGKTTLLNLL 203 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L 203 (562)
+++|.||+||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 7899999999999999999
|
| >1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1 | Back alignment and structure |
|---|
Probab=96.18 E-value=0.043 Score=57.32 Aligned_cols=27 Identities=30% Similarity=0.544 Sum_probs=24.5
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHc
Q 008534 179 SVNPGEVLALMGPSGSGKTTLLNLLSG 205 (562)
Q Consensus 179 ~i~~Ge~~alvGpsGsGKSTLl~~L~G 205 (562)
-+++|+++.|.||+|+|||||...++.
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~ 96 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVA 96 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHH
Confidence 579999999999999999999977764
|
| >2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=96.17 E-value=0.0033 Score=61.50 Aligned_cols=77 Identities=19% Similarity=0.261 Sum_probs=45.5
Q ss_pred HHHHHhhCCCEEEEeCCCCC-CCHHHHHHHHHHHHHHHHCCcEEEEEecCC---------------------ChHHHhcC
Q 008534 306 IGNEIIINPSLLFLDEPTSG-LDSTTALRIVQMLQDIAEAGKTVVTTIHQP---------------------SSRLFHKF 363 (562)
Q Consensus 306 IAraLl~~P~iLlLDEPTsg-LD~~~~~~i~~~L~~l~~~g~Tvii~tH~~---------------------~~~i~~~~ 363 (562)
+..+|..+|+++|+||+-.- .+.......++.+..+...|..++.++|-- .+.+++.|
T Consensus 77 l~~~L~~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~sgidVitT~Nlqh~esl~d~v~~itg~~v~e~vpd~~~~~a 156 (228)
T 2r8r_A 77 LDALLKAAPSLVLVDELAHTNAPGSRHTKRWQDIQELLAAGIDVYTTVNVQHLESLNDQVRGITGVQVRETLPDWVLQEA 156 (228)
T ss_dssp HHHHHHHCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHHTTCEEEEEEEGGGBGGGHHHHHHHHSCCCCSCBCHHHHHTC
T ss_pred HHHHHhcCCCEEEEeCCCCCCcccchhHHHHHHHHHHHcCCCCEEEEccccccccHHHHHHHHcCCCcCCcCccHHHhhC
Confidence 33445578999999997642 332222333444444555688899988821 12244566
Q ss_pred CEEEEEcCCeEEEecChHHHHHHHHh
Q 008534 364 DKLILLGKGSLLYFGKASEAMAYFSS 389 (562)
Q Consensus 364 D~i~vL~~G~iv~~G~~~el~~~f~~ 389 (562)
|.|.+++ =+|+++++.+..
T Consensus 157 ~~v~lvD-------~~p~~l~~rl~~ 175 (228)
T 2r8r_A 157 FDLVLID-------LPPRELLERLRD 175 (228)
T ss_dssp SEEEEBC-------CCHHHHHHHHHT
T ss_pred CeEEEec-------CCHHHHHHHHHC
Confidence 7766653 467777766554
|
| >1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2 | Back alignment and structure |
|---|
Probab=96.16 E-value=0.086 Score=56.99 Aligned_cols=35 Identities=23% Similarity=0.168 Sum_probs=29.2
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHc
Q 008534 171 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSG 205 (562)
Q Consensus 171 ~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G 205 (562)
+-|+.+..-+.+|+++.|.|++|+|||||+--++-
T Consensus 230 ~~LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~ 264 (503)
T 1q57_A 230 TGINDKTLGARGGEVIMVTSGSGMVMSTFVRQQAL 264 (503)
T ss_dssp TTHHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHH
T ss_pred hhhhHhhcccCCCeEEEEeecCCCCchHHHHHHHH
Confidence 45666655699999999999999999999877764
|
| >3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* | Back alignment and structure |
|---|
Probab=96.16 E-value=0.0026 Score=62.53 Aligned_cols=24 Identities=33% Similarity=0.547 Sum_probs=21.4
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcC
Q 008534 183 GEVLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 183 Ge~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.-+++|.||+||||||+.+.|+..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~ 32 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARA 32 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 348999999999999999999963
|
| >3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=96.10 E-value=0.003 Score=58.32 Aligned_cols=25 Identities=28% Similarity=0.300 Sum_probs=21.7
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcC
Q 008534 182 PGEVLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 182 ~Ge~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.+..+.|+|++||||||+.+.|+..
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~ 28 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKL 28 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3668999999999999999999853
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.09 E-value=0.0027 Score=67.12 Aligned_cols=43 Identities=16% Similarity=0.274 Sum_probs=31.7
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCCC---------CCCCccEEEECCE
Q 008534 179 SVNPGEVLALMGPSGSGKTTLLNLLSGRLM---------EPTVGGSITYNDH 221 (562)
Q Consensus 179 ~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~---------~~~~~G~I~i~G~ 221 (562)
.+..|..++|+|+||+|||||++.|+|.-. ..+..|.+.+++.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~ 69 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE 69 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence 556788899999999999999999998511 1134577777653
|
| >1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B* | Back alignment and structure |
|---|
Probab=96.09 E-value=0.003 Score=63.67 Aligned_cols=36 Identities=28% Similarity=0.398 Sum_probs=28.4
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECC
Q 008534 181 NPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYND 220 (562)
Q Consensus 181 ~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G 220 (562)
..|.++.|.|||||||||+.+.|+..+. .|.+.+++
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~----~~~~~Is~ 66 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQ----GNVIVIDN 66 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTT----TCCEEECT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC----CCeEEEec
Confidence 4577999999999999999999986431 35566665
|
| >2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A | Back alignment and structure |
|---|
Probab=96.07 E-value=0.003 Score=62.42 Aligned_cols=24 Identities=25% Similarity=0.361 Sum_probs=21.3
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 008534 184 EVLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 184 e~~alvGpsGsGKSTLl~~L~G~l 207 (562)
.+++|+||||||||||.+.|+..+
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 378999999999999999999743
|
| >1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A | Back alignment and structure |
|---|
Probab=96.07 E-value=0.0029 Score=59.99 Aligned_cols=22 Identities=45% Similarity=0.752 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.+.|+||||||||||++.|...
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 3789999999999999998754
|
| >2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* | Back alignment and structure |
|---|
Probab=96.06 E-value=0.0032 Score=58.76 Aligned_cols=23 Identities=35% Similarity=0.628 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~l 207 (562)
+++|+|++||||||+.+.|+..+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999999743
|
| >2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=96.03 E-value=0.0037 Score=58.64 Aligned_cols=26 Identities=35% Similarity=0.569 Sum_probs=23.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 008534 182 PGEVLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 182 ~Ge~~alvGpsGsGKSTLl~~L~G~l 207 (562)
+|.+++|.|++||||||+.+.|+..+
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l 28 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWI 28 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57789999999999999999999644
|
| >1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A | Back alignment and structure |
|---|
Probab=96.03 E-value=0.0037 Score=59.62 Aligned_cols=24 Identities=38% Similarity=0.513 Sum_probs=21.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHc
Q 008534 182 PGEVLALMGPSGSGKTTLLNLLSG 205 (562)
Q Consensus 182 ~Ge~~alvGpsGsGKSTLl~~L~G 205 (562)
.+-+++|.|++||||||+.+.|+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999996
|
| >2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* | Back alignment and structure |
|---|
Probab=96.03 E-value=0.0036 Score=58.61 Aligned_cols=26 Identities=27% Similarity=0.335 Sum_probs=23.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 008534 182 PGEVLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 182 ~Ge~~alvGpsGsGKSTLl~~L~G~l 207 (562)
+|.+++|.|++||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999999644
|
| >1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.98 E-value=0.0039 Score=56.93 Aligned_cols=22 Identities=27% Similarity=0.454 Sum_probs=20.3
Q ss_pred eEEEEECCCCCcHHHHHHHHHc
Q 008534 184 EVLALMGPSGSGKTTLLNLLSG 205 (562)
Q Consensus 184 e~~alvGpsGsGKSTLl~~L~G 205 (562)
.++.|.|++||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999985
|
| >3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A | Back alignment and structure |
|---|
Probab=95.96 E-value=0.0033 Score=57.95 Aligned_cols=24 Identities=38% Similarity=0.365 Sum_probs=21.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHc
Q 008534 182 PGEVLALMGPSGSGKTTLLNLLSG 205 (562)
Q Consensus 182 ~Ge~~alvGpsGsGKSTLl~~L~G 205 (562)
.+..+.|+|++||||||+.+.|+-
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHH
Confidence 567899999999999999999984
|
| >3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.89 E-value=0.039 Score=57.58 Aligned_cols=26 Identities=38% Similarity=0.684 Sum_probs=22.7
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcC
Q 008534 181 NPGEVLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 181 ~~Ge~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++.-+.|.||+|+|||+|++.|+..
T Consensus 146 ~~~~~vLL~GppGtGKT~la~aia~~ 171 (389)
T 3vfd_A 146 APARGLLLFGPPGNGKTMLAKAVAAE 171 (389)
T ss_dssp CCCSEEEEESSTTSCHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHh
Confidence 34568999999999999999999964
|
| >2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A* | Back alignment and structure |
|---|
Probab=95.88 E-value=0.0042 Score=58.53 Aligned_cols=26 Identities=31% Similarity=0.415 Sum_probs=23.2
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcC
Q 008534 181 NPGEVLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 181 ~~Ge~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.+|.+++|.|++||||||+.+.|+-.
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 46789999999999999999999853
|
| >2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A | Back alignment and structure |
|---|
Probab=95.88 E-value=0.004 Score=57.84 Aligned_cols=25 Identities=24% Similarity=0.387 Sum_probs=22.6
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHc
Q 008534 181 NPGEVLALMGPSGSGKTTLLNLLSG 205 (562)
Q Consensus 181 ~~Ge~~alvGpsGsGKSTLl~~L~G 205 (562)
.++.+++|+|++||||||+.+.|+-
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHH
Confidence 3577999999999999999999985
|
| >1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A* | Back alignment and structure |
|---|
Probab=95.87 E-value=0.002 Score=60.85 Aligned_cols=23 Identities=43% Similarity=0.749 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~l 207 (562)
+++|+|++||||||+++.|+..+
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l 24 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998744
|
| >1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=95.83 E-value=0.0043 Score=57.01 Aligned_cols=22 Identities=36% Similarity=0.528 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|++||||||+.+.|+..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5899999999999999999964
|
| >1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A* | Back alignment and structure |
|---|
Probab=95.80 E-value=0.0046 Score=58.28 Aligned_cols=27 Identities=26% Similarity=0.348 Sum_probs=23.5
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcC
Q 008534 180 VNPGEVLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 180 i~~Ge~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|.+++|.|++||||||+.+.|+-.
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 356889999999999999999999853
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=95.80 E-value=0.0087 Score=55.36 Aligned_cols=22 Identities=23% Similarity=0.360 Sum_probs=19.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|++|+|||||++.+.+.
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999766653
|
| >1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.78 E-value=0.0051 Score=57.43 Aligned_cols=22 Identities=36% Similarity=0.620 Sum_probs=20.7
Q ss_pred eEEEEECCCCCcHHHHHHHHHc
Q 008534 184 EVLALMGPSGSGKTTLLNLLSG 205 (562)
Q Consensus 184 e~~alvGpsGsGKSTLl~~L~G 205 (562)
.+++|+|++||||||+.+.|+.
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999996
|
| >1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.78 E-value=0.0055 Score=56.58 Aligned_cols=24 Identities=25% Similarity=0.310 Sum_probs=21.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHc
Q 008534 182 PGEVLALMGPSGSGKTTLLNLLSG 205 (562)
Q Consensus 182 ~Ge~~alvGpsGsGKSTLl~~L~G 205 (562)
++.+++|.|++||||||+.+.|+-
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999985
|
| >1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.75 E-value=0.0047 Score=56.90 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~l 207 (562)
+++|.|++||||||+.+.|+-.+
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998643
|
| >1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14 | Back alignment and structure |
|---|
Probab=95.69 E-value=0.024 Score=53.74 Aligned_cols=53 Identities=23% Similarity=0.357 Sum_probs=39.7
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEec---------CCChHHHhcCCEEEEEc
Q 008534 313 NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIH---------QPSSRLFHKFDKLILLG 370 (562)
Q Consensus 313 ~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH---------~~~~~i~~~~D~i~vL~ 370 (562)
+.+++++||.-- +|+. +++.++.++..|..||++-+ ..+..+..+||.|.-|+
T Consensus 81 ~~dvViIDEaqf-l~~~----~v~~l~~l~~~~~~Vi~~Gl~~df~~~~F~~~~~L~~~AD~V~el~ 142 (191)
T 1xx6_A 81 DTEVIAIDEVQF-FDDE----IVEIVNKIAESGRRVICAGLDMDFRGKPFGPIPELMAIAEFVDKIQ 142 (191)
T ss_dssp TCSEEEECSGGG-SCTH----HHHHHHHHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred cCCEEEEECCCC-CCHH----HHHHHHHHHhCCCEEEEEecccccccCcCccHHHHHHHcccEEeee
Confidence 479999999644 6643 35667777777999999998 44566778899887764
|
| >3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.66 E-value=0.026 Score=70.40 Aligned_cols=150 Identities=16% Similarity=0.213 Sum_probs=84.9
Q ss_pred ceeeceEE--EEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHH
Q 008534 171 DILNGITG--SVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKE 248 (562)
Q Consensus 171 ~iL~~vs~--~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~~~igyV~Q~~~l~~~lTV~e 248 (562)
+-|+.+-. =+++|+++.|.||+|+|||||...++.... . .| ..+.|+.-+..+-+ ++
T Consensus 369 ~~LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~~~a--~-~G--------------~~vlyis~E~s~~~---~~- 427 (2050)
T 3cmu_A 369 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ--R-EG--------------KTCAFIDAEHALDP---IY- 427 (2050)
T ss_dssp HHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHH--T-TT--------------CCEEEECTTSCCCH---HH-
T ss_pred HHHHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHHHHH--h-cC--------------CeEEEEEcCCCHHH---HH-
Confidence 44665543 599999999999999999999887774221 1 11 12444443322110 00
Q ss_pred HHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHh--hCCCEEEEeCCCCCC
Q 008534 249 TLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEII--INPSLLFLDEPTSGL 326 (562)
Q Consensus 249 nl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl--~~P~iLlLDEPTsgL 326 (562)
+. .+|++. .+-.+- ...+. .+-+.+++.|+ .+|+++++|.-++-.
T Consensus 428 ----a~----------------------~lGvd~-~~L~I~----~~~~~--e~il~~~~~lv~~~~~~lIVIDSL~al~ 474 (2050)
T 3cmu_A 428 ----AR----------------------KLGVDI-DNLLCS----QPDTG--EQALEICDALARSGAVDVIVVDSVAALT 474 (2050)
T ss_dssp ----HH----------------------HTTCCT-TTCEEE----CCSSH--HHHHHHHHHHHHHTCCSEEEESCGGGCC
T ss_pred ----HH----------------------HcCCCH-HHeEEe----CCCCH--HHHHHHHHHHHHhcCCcEEEECCHHHhh
Confidence 11 112110 000111 11233 23456667665 479999999988755
Q ss_pred C-H------------HHHHHHHHHHHHH---H-HCCcEEEEEecCCCh---------------HHHhcCCEEEEEcCCeE
Q 008534 327 D-S------------TTALRIVQMLQDI---A-EAGKTVVTTIHQPSS---------------RLFHKFDKLILLGKGSL 374 (562)
Q Consensus 327 D-~------------~~~~~i~~~L~~l---~-~~g~Tvii~tH~~~~---------------~i~~~~D~i~vL~~G~i 374 (562)
. + .....+.+.|+.| + +.+.+||++.|--.. .+...+|-++.|+....
T Consensus 475 ~~~e~eg~~Gd~~~~~q~R~is~~Lr~L~~lake~~i~VIlinQl~~~vg~~~g~p~~psGg~ale~~ADv~l~L~R~~~ 554 (2050)
T 3cmu_A 475 PKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGA 554 (2050)
T ss_dssp CHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECCEECTTCCSSCCEECSSHHHHHHHEEEEEEEEEEEE
T ss_pred cccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCeEEEEeecccccccccCCCcCCCCcchhhhhCCEEEEEEeccc
Confidence 2 1 1233455666666 3 358899998874211 25567888888876543
|
| >2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.59 E-value=0.005 Score=57.26 Aligned_cols=25 Identities=28% Similarity=0.416 Sum_probs=22.7
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHc
Q 008534 181 NPGEVLALMGPSGSGKTTLLNLLSG 205 (562)
Q Consensus 181 ~~Ge~~alvGpsGsGKSTLl~~L~G 205 (562)
+++.+++|.|++||||||+.+.|+-
T Consensus 10 ~~~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 10 RKCKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp HHSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHH
Confidence 4567999999999999999999985
|
| >3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=95.57 E-value=0.0057 Score=60.66 Aligned_cols=22 Identities=45% Similarity=0.718 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|++|||||||++.|+|.
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999985
|
| >1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A* | Back alignment and structure |
|---|
Probab=95.55 E-value=0.0073 Score=57.68 Aligned_cols=25 Identities=36% Similarity=0.527 Sum_probs=22.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcC
Q 008534 182 PGEVLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 182 ~Ge~~alvGpsGsGKSTLl~~L~G~ 206 (562)
+|-.++|+|++||||||+.+.|+-.
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~ 27 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQER 27 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 5678999999999999999999853
|
| >2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=95.54 E-value=0.0048 Score=56.69 Aligned_cols=25 Identities=32% Similarity=0.481 Sum_probs=17.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcC
Q 008534 182 PGEVLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 182 ~Ge~~alvGpsGsGKSTLl~~L~G~ 206 (562)
++.++.|.|++||||||+.+.|+..
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~ 28 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHER 28 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 4678999999999999999999853
|
| >2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.41 E-value=0.0079 Score=55.44 Aligned_cols=23 Identities=43% Similarity=0.725 Sum_probs=21.1
Q ss_pred eEEEEECCCCCcHHHHHHHHHcC
Q 008534 184 EVLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 184 e~~alvGpsGsGKSTLl~~L~G~ 206 (562)
-.++|+|++|+|||||++.|.+.
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 37899999999999999999984
|
| >1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2 | Back alignment and structure |
|---|
Probab=95.40 E-value=0.012 Score=60.16 Aligned_cols=36 Identities=31% Similarity=0.327 Sum_probs=32.0
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcC
Q 008534 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 170 ~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~ 206 (562)
...+|+..+.+ .|.-++|+|+||+|||||...|.++
T Consensus 132 ~~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 132 TTSLHGVLVDV-YGVGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp EEEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred ceeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHhc
Confidence 46889988888 8899999999999999999999863
|
| >3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* | Back alignment and structure |
|---|
Probab=95.37 E-value=0.041 Score=67.76 Aligned_cols=153 Identities=16% Similarity=0.219 Sum_probs=86.4
Q ss_pred ceeeceE--EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHH
Q 008534 171 DILNGIT--GSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKE 248 (562)
Q Consensus 171 ~iL~~vs--~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~~~igyV~Q~~~l~~~lTV~e 248 (562)
.-|+.+- +=+++|+++.|.||+|+|||||.--++.... ..| ..+.|+.-+...-+ +
T Consensus 369 ~~LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~~~~---~~G--------------~~vlyis~E~s~~~---~-- 426 (1706)
T 3cmw_A 369 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ---REG--------------KTCAFIDAEHALDP---I-- 426 (1706)
T ss_dssp HHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHH---HTT--------------CCEEEECTTSCCCH---H--
T ss_pred HHHHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHH---HhC--------------CCeEEEEccCchHH---H--
Confidence 4566664 3599999999999999999999877764221 011 23556654432211 0
Q ss_pred HHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHh--hCCCEEEEeCCCCCC
Q 008534 249 TLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEII--INPSLLFLDEPTSGL 326 (562)
Q Consensus 249 nl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl--~~P~iLlLDEPTsgL 326 (562)
++. .+|++. .+-.+- ..-++.| -+.+++.++ .+|+++++|..++=.
T Consensus 427 ---~a~----------------------~lGvd~-~~L~i~----~~~~~e~--~l~~l~~lv~~~~~~lVVIDSL~al~ 474 (1706)
T 3cmw_A 427 ---YAR----------------------KLGVDI-DNLLCS----QPDTGEQ--ALEICDALARSGAVDVIVVDSVAALT 474 (1706)
T ss_dssp ---HHH----------------------HTTCCG-GGCEEE----CCSSHHH--HHHHHHHHHHHTCCSEEEESCSTTCC
T ss_pred ---HHH----------------------HcCCCH-HHeEEc----CCCCHHH--HHHHHHHHHHhcCCCEEEECCHHHhh
Confidence 011 122210 000010 0112332 334556665 479999999998866
Q ss_pred CH-------------HHHHHHHHHHHHH---H-HCCcEEEEEecCC---------------ChHHHhcCCEEEEEcCCeE
Q 008534 327 DS-------------TTALRIVQMLQDI---A-EAGKTVVTTIHQP---------------SSRLFHKFDKLILLGKGSL 374 (562)
Q Consensus 327 D~-------------~~~~~i~~~L~~l---~-~~g~Tvii~tH~~---------------~~~i~~~~D~i~vL~~G~i 374 (562)
.. ...+.+.+.++.| + +.|.+||++.|-- ...+...+|-++.+...+.
T Consensus 475 ~~~e~e~~~g~~~~~~q~r~~s~~Lr~L~~~ak~~~v~VI~inQl~~~vg~~fg~~~~p~gg~ale~~ADv~L~L~R~~~ 554 (1706)
T 3cmw_A 475 PKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGA 554 (1706)
T ss_dssp CHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTCEEEEEECEEECTTCCSSCCEEESSCSHHHHHEEEEEEEEEEEE
T ss_pred ccccccccccccchhHHHHHHHHHHHHHHHHHHHcCCEEEEEeecccccccccCCCccCCCCcceeeeCCEEEEEEeccc
Confidence 41 1223445555555 3 3589999998842 1235567898888876544
Q ss_pred EEe
Q 008534 375 LYF 377 (562)
Q Consensus 375 v~~ 377 (562)
+..
T Consensus 555 ~~~ 557 (1706)
T 3cmw_A 555 VKE 557 (1706)
T ss_dssp EEE
T ss_pred ccc
Confidence 333
|
| >1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=95.37 E-value=0.0087 Score=55.83 Aligned_cols=24 Identities=33% Similarity=0.398 Sum_probs=21.2
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 008534 184 EVLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 184 e~~alvGpsGsGKSTLl~~L~G~l 207 (562)
.+++|+|++|||||||+..|...+
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhh
Confidence 378999999999999999998754
|
| >1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A* | Back alignment and structure |
|---|
Probab=95.35 E-value=0.0081 Score=57.70 Aligned_cols=25 Identities=28% Similarity=0.328 Sum_probs=21.4
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHc
Q 008534 181 NPGEVLALMGPSGSGKTTLLNLLSG 205 (562)
Q Consensus 181 ~~Ge~~alvGpsGsGKSTLl~~L~G 205 (562)
.++.+++|+|++||||||+.+.|+-
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHH
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999999985
|
| >3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=95.32 E-value=0.027 Score=50.24 Aligned_cols=42 Identities=7% Similarity=0.154 Sum_probs=29.7
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCC
Q 008534 313 NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQP 355 (562)
Q Consensus 313 ~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~ 355 (562)
+..+|++||.- .|++..+..+.+.+.+....+..+|++|...
T Consensus 75 ~~~~l~lDei~-~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~~ 116 (143)
T 3co5_A 75 EGGVLYVGDIA-QYSRNIQTGITFIIGKAERCRVRVIASCSYA 116 (143)
T ss_dssp TTSEEEEEECT-TCCHHHHHHHHHHHHHHTTTTCEEEEEEEEC
T ss_pred CCCeEEEeChH-HCCHHHHHHHHHHHHhCCCCCEEEEEecCCC
Confidence 34689999964 6788888888888776533355677777653
|
| >1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* | Back alignment and structure |
|---|
Probab=95.32 E-value=0.0082 Score=53.50 Aligned_cols=23 Identities=13% Similarity=0.406 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~l 207 (562)
.++|+|++|+|||||++.+.+..
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998743
|
| >2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.31 E-value=0.009 Score=53.73 Aligned_cols=22 Identities=41% Similarity=0.795 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|++|+|||||++.+.+.
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCccHHHHHHHHhcC
Confidence 5899999999999999999974
|
| >2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A | Back alignment and structure |
|---|
Probab=95.30 E-value=0.01 Score=55.76 Aligned_cols=23 Identities=35% Similarity=0.475 Sum_probs=20.9
Q ss_pred CeEEEEECCCCCcHHHHHHHHHc
Q 008534 183 GEVLALMGPSGSGKTTLLNLLSG 205 (562)
Q Consensus 183 Ge~~alvGpsGsGKSTLl~~L~G 205 (562)
+-+++|+|++||||||+.+.|+.
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999985
|
| >3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus} | Back alignment and structure |
|---|
Probab=95.27 E-value=0.0093 Score=56.52 Aligned_cols=21 Identities=33% Similarity=0.466 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 008534 185 VLALMGPSGSGKTTLLNLLSG 205 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G 205 (562)
.++|.||+||||||+.+.|+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999975
|
| >2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.27 E-value=0.0094 Score=53.21 Aligned_cols=22 Identities=27% Similarity=0.468 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|++|+|||||++.+.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999974
|
| >3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A* | Back alignment and structure |
|---|
Probab=95.25 E-value=0.0096 Score=55.72 Aligned_cols=22 Identities=27% Similarity=0.587 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
+++|.|++||||||+.+.|+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~ 25 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAA 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 7999999999999999999974
|
| >3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* | Back alignment and structure |
|---|
Probab=95.24 E-value=0.0076 Score=53.81 Aligned_cols=23 Identities=30% Similarity=0.589 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~l 207 (562)
.++|+|++|+|||||++.+.|..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~ 26 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVE 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCcc
Confidence 47999999999999999998743
|
| >1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* | Back alignment and structure |
|---|
Probab=95.23 E-value=0.0093 Score=52.85 Aligned_cols=22 Identities=23% Similarity=0.418 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|++|+|||||++.+.+.
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
|
| >2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=95.23 E-value=0.01 Score=54.81 Aligned_cols=22 Identities=41% Similarity=0.463 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
+++|.|++||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEY 23 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999863
|
| >1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* | Back alignment and structure |
|---|
Probab=95.19 E-value=0.0095 Score=52.84 Aligned_cols=22 Identities=23% Similarity=0.350 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|++|+|||||++.+.+.
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999874
|
| >2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.18 E-value=0.011 Score=52.43 Aligned_cols=22 Identities=27% Similarity=0.516 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|++|+|||||++.+.+.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4799999999999999999974
|
| >2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... | Back alignment and structure |
|---|
Probab=95.18 E-value=0.0087 Score=52.86 Aligned_cols=22 Identities=32% Similarity=0.462 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++++|++|+|||||++.+.+.
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999875
|
| >1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1 | Back alignment and structure |
|---|
Probab=95.18 E-value=0.0084 Score=57.30 Aligned_cols=25 Identities=24% Similarity=0.311 Sum_probs=21.7
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcC
Q 008534 182 PGEVLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 182 ~Ge~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.+.+++|+||+||||||+.+.|+-.
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~ 28 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTK 28 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3457999999999999999999853
|
| >3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A* | Back alignment and structure |
|---|
Probab=95.17 E-value=0.01 Score=53.08 Aligned_cols=22 Identities=41% Similarity=0.628 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|++|+|||||++.+.+.
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~ 25 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGL 25 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 4789999999999999999863
|
| >1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A* | Back alignment and structure |
|---|
Probab=95.17 E-value=0.011 Score=55.38 Aligned_cols=23 Identities=30% Similarity=0.397 Sum_probs=20.7
Q ss_pred CeEEEEECCCCCcHHHHHHHHHc
Q 008534 183 GEVLALMGPSGSGKTTLLNLLSG 205 (562)
Q Consensus 183 Ge~~alvGpsGsGKSTLl~~L~G 205 (562)
..+++|.|++||||||+.+.|+-
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999985
|
| >1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A* | Back alignment and structure |
|---|
Probab=95.15 E-value=0.0093 Score=54.17 Aligned_cols=23 Identities=30% Similarity=0.417 Sum_probs=20.5
Q ss_pred eEEEEECCCCCcHHHHHHHHHcC
Q 008534 184 EVLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 184 e~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.+++|.|++||||||+.+.|+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999853
|
| >3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A* | Back alignment and structure |
|---|
Probab=95.15 E-value=0.012 Score=58.15 Aligned_cols=25 Identities=28% Similarity=0.313 Sum_probs=22.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcC
Q 008534 182 PGEVLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 182 ~Ge~~alvGpsGsGKSTLl~~L~G~ 206 (562)
++.++.|.|++||||||+.+.|+..
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999864
|
| >1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A* | Back alignment and structure |
|---|
Probab=95.14 E-value=0.011 Score=54.39 Aligned_cols=23 Identities=30% Similarity=0.387 Sum_probs=20.9
Q ss_pred CeEEEEECCCCCcHHHHHHHHHc
Q 008534 183 GEVLALMGPSGSGKTTLLNLLSG 205 (562)
Q Consensus 183 Ge~~alvGpsGsGKSTLl~~L~G 205 (562)
..+++|.|++||||||+.+.|+.
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999985
|
| >1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* | Back alignment and structure |
|---|
Probab=95.14 E-value=0.01 Score=52.97 Aligned_cols=23 Identities=22% Similarity=0.447 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~l 207 (562)
.++|+|++|+|||||++.+.+..
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48999999999999999999854
|
| >1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A* | Back alignment and structure |
|---|
Probab=95.12 E-value=0.012 Score=53.55 Aligned_cols=23 Identities=39% Similarity=0.485 Sum_probs=21.1
Q ss_pred eEEEEECCCCCcHHHHHHHHHcC
Q 008534 184 EVLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 184 e~~alvGpsGsGKSTLl~~L~G~ 206 (562)
++++|.|+.||||||+.+.|+..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999999853
|
| >3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A* | Back alignment and structure |
|---|
Probab=95.12 E-value=0.011 Score=56.07 Aligned_cols=22 Identities=36% Similarity=0.459 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+||+||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999753
|
| >3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.10 E-value=0.0098 Score=53.68 Aligned_cols=22 Identities=36% Similarity=0.594 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|++|+|||||++.|.+.
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999874
|
| >1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.10 E-value=0.01 Score=52.79 Aligned_cols=23 Identities=22% Similarity=0.375 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~l 207 (562)
.++|+|++|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999998753
|
| >2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=95.10 E-value=0.012 Score=53.23 Aligned_cols=21 Identities=43% Similarity=0.445 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 008534 185 VLALMGPSGSGKTTLLNLLSG 205 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G 205 (562)
.++|.|++||||||+.+.|+-
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999985
|
| >1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* | Back alignment and structure |
|---|
Probab=95.10 E-value=0.011 Score=52.96 Aligned_cols=22 Identities=27% Similarity=0.372 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|++|+|||||++.+.+.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999974
|
| >3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A* | Back alignment and structure |
|---|
Probab=95.10 E-value=0.011 Score=59.07 Aligned_cols=22 Identities=50% Similarity=0.872 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|++|+|||||++.|+|.
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 5899999999999999999984
|
| >4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A | Back alignment and structure |
|---|
Probab=95.09 E-value=0.0069 Score=63.39 Aligned_cols=45 Identities=11% Similarity=0.117 Sum_probs=37.8
Q ss_pred CCCEEEEeCCCCCCC---HHHHHHHHHHHHHHHHCCcEEEEEecCCCh
Q 008534 313 NPSLLFLDEPTSGLD---STTALRIVQMLQDIAEAGKTVVTTIHQPSS 357 (562)
Q Consensus 313 ~P~iLlLDEPTsgLD---~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~ 357 (562)
.|.++++||.=.-++ +.....+.+.+++..+.|..++++||.++.
T Consensus 262 ~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk~g~~~~~~tQ~~~d 309 (392)
T 4ag6_A 262 ERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRKYNGSLIVISQNVID 309 (392)
T ss_dssp TTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGGGTCEEEEEESCGGG
T ss_pred ccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhhhCeEEEEEcCCHHH
Confidence 578999999988884 667777888888887789999999999864
|
| >1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* | Back alignment and structure |
|---|
Probab=95.07 E-value=0.011 Score=53.44 Aligned_cols=23 Identities=30% Similarity=0.511 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~l 207 (562)
.++|+|++|+|||||++.+.+..
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999998743
|
| >1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* | Back alignment and structure |
|---|
Probab=95.06 E-value=0.011 Score=52.60 Aligned_cols=22 Identities=27% Similarity=0.453 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|++|+|||||++.+.+.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999874
|
| >1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* | Back alignment and structure |
|---|
Probab=95.06 E-value=0.011 Score=53.33 Aligned_cols=22 Identities=32% Similarity=0.567 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|++|+|||||++.+.+.
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999874
|
| >1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A | Back alignment and structure |
|---|
Probab=95.06 E-value=0.0099 Score=53.06 Aligned_cols=23 Identities=35% Similarity=0.469 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~l 207 (562)
.++|+|++|+|||||++.+.+.-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 47999999999999999999743
|
| >2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A* | Back alignment and structure |
|---|
Probab=95.04 E-value=0.014 Score=52.68 Aligned_cols=24 Identities=38% Similarity=0.556 Sum_probs=21.4
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcC
Q 008534 183 GEVLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 183 Ge~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.-.++|+|++|+|||||++.+.+.
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 347899999999999999999874
|
| >2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A* | Back alignment and structure |
|---|
Probab=95.03 E-value=0.0099 Score=54.82 Aligned_cols=22 Identities=36% Similarity=0.457 Sum_probs=20.1
Q ss_pred eEEEEECCCCCcHHHHHHHHHc
Q 008534 184 EVLALMGPSGSGKTTLLNLLSG 205 (562)
Q Consensus 184 e~~alvGpsGsGKSTLl~~L~G 205 (562)
.+++|+|++||||||+.+.|+-
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999985
|
| >1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* | Back alignment and structure |
|---|
Probab=95.00 E-value=0.01 Score=54.52 Aligned_cols=22 Identities=41% Similarity=0.616 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|++|+|||||++.+.+.
T Consensus 18 ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 18 RILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999874
|
| >1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A* | Back alignment and structure |
|---|
Probab=94.96 E-value=0.012 Score=54.29 Aligned_cols=22 Identities=41% Similarity=0.614 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|++|+|||||++.|.+.
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 25 EIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999974
|
| >3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=94.94 E-value=0.014 Score=56.96 Aligned_cols=24 Identities=33% Similarity=0.411 Sum_probs=21.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHc
Q 008534 182 PGEVLALMGPSGSGKTTLLNLLSG 205 (562)
Q Consensus 182 ~Ge~~alvGpsGsGKSTLl~~L~G 205 (562)
++-+++|.||+||||||+.+.|+-
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 566899999999999999999984
|
| >3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A | Back alignment and structure |
|---|
Probab=94.93 E-value=0.012 Score=53.92 Aligned_cols=22 Identities=45% Similarity=0.650 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|++|+|||||++.+.+.
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999985
|
| >2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* | Back alignment and structure |
|---|
Probab=94.93 E-value=0.011 Score=53.24 Aligned_cols=22 Identities=27% Similarity=0.395 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|++|+|||||++.+.+.
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999875
|
| >3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=94.91 E-value=0.013 Score=53.78 Aligned_cols=22 Identities=27% Similarity=0.424 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|+.|+|||||++.|.+.
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999985
|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* | Back alignment and structure |
|---|
Probab=94.90 E-value=0.013 Score=53.56 Aligned_cols=23 Identities=35% Similarity=0.509 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~l 207 (562)
.++|+|++|+|||||++.+.|..
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 57999999999999999999865
|
| >1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* | Back alignment and structure |
|---|
Probab=94.90 E-value=0.013 Score=52.18 Aligned_cols=22 Identities=32% Similarity=0.445 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|++|+|||||++.+.+.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
|
| >4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* | Back alignment and structure |
|---|
Probab=94.88 E-value=0.013 Score=53.34 Aligned_cols=23 Identities=30% Similarity=0.416 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~l 207 (562)
.++|+|++|+|||||++.|.+..
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 48999999999999999999753
|
| >2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* | Back alignment and structure |
|---|
Probab=94.85 E-value=0.015 Score=52.54 Aligned_cols=22 Identities=27% Similarity=0.498 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|++|+|||||++.+.+.
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4899999999999999999874
|
| >2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.84 E-value=0.012 Score=53.72 Aligned_cols=22 Identities=36% Similarity=0.643 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|++|+|||||++.+.+.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 4789999999999999999974
|
| >3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* | Back alignment and structure |
|---|
Probab=94.84 E-value=0.013 Score=53.35 Aligned_cols=22 Identities=32% Similarity=0.480 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|++|+|||||++.+.+.
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999974
|
| >1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* | Back alignment and structure |
|---|
Probab=94.81 E-value=0.014 Score=52.23 Aligned_cols=22 Identities=36% Similarity=0.540 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|++|+|||||++.+.+.
T Consensus 9 ~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 9 RILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999864
|
| >2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.80 E-value=0.014 Score=53.84 Aligned_cols=23 Identities=39% Similarity=0.582 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~l 207 (562)
.++|+|++|+|||||++.|.+..
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999999743
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=94.79 E-value=0.28 Score=52.40 Aligned_cols=26 Identities=35% Similarity=0.491 Sum_probs=22.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 008534 182 PGEVLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 182 ~Ge~~alvGpsGsGKSTLl~~L~G~l 207 (562)
++.+++++|++|+||||++..|+..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l 124 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYF 124 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHH
Confidence 45799999999999999999998644
|
| >1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=94.79 E-value=0.024 Score=59.16 Aligned_cols=38 Identities=26% Similarity=0.342 Sum_probs=28.1
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCC---------CCCCccEEEECC
Q 008534 183 GEVLALMGPSGSGKTTLLNLLSGRLM---------EPTVGGSITYND 220 (562)
Q Consensus 183 Ge~~alvGpsGsGKSTLl~~L~G~l~---------~~~~~G~I~i~G 220 (562)
|-.++|+|.+|+|||||++.|+|.-. ..+..|.+.+++
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 34689999999999999999998321 012357777765
|
| >1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... | Back alignment and structure |
|---|
Probab=94.75 E-value=0.015 Score=51.75 Aligned_cols=22 Identities=32% Similarity=0.413 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|++|+|||||++.+.+.
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3789999999999999999863
|
| >3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus} | Back alignment and structure |
|---|
Probab=94.73 E-value=0.024 Score=58.66 Aligned_cols=26 Identities=35% Similarity=0.576 Sum_probs=23.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 008534 182 PGEVLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 182 ~Ge~~alvGpsGsGKSTLl~~L~G~l 207 (562)
++.+++|+||+|||||||...|+-.+
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHC
Confidence 45699999999999999999999644
|
| >1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A* | Back alignment and structure |
|---|
Probab=94.70 E-value=0.016 Score=56.71 Aligned_cols=24 Identities=21% Similarity=0.336 Sum_probs=21.2
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 008534 184 EVLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 184 e~~alvGpsGsGKSTLl~~L~G~l 207 (562)
-+++|.|++||||||+.+.|+..+
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998633
|
| >2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* | Back alignment and structure |
|---|
Probab=94.68 E-value=0.014 Score=52.49 Aligned_cols=22 Identities=27% Similarity=0.427 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|++|+|||||++.+.+.
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
|
| >2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* | Back alignment and structure |
|---|
Probab=94.68 E-value=0.016 Score=52.61 Aligned_cols=22 Identities=23% Similarity=0.350 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|++|+|||||++.+.+.
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhhC
Confidence 5899999999999999999974
|
| >2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.68 E-value=0.016 Score=52.46 Aligned_cols=23 Identities=39% Similarity=0.495 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~l 207 (562)
.++|+|++|+|||||++.+.+..
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 58999999999999999998743
|
| >1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.66 E-value=0.0096 Score=54.14 Aligned_cols=23 Identities=35% Similarity=0.462 Sum_probs=20.3
Q ss_pred CeEEEEECCCCCcHHHHHHHHHc
Q 008534 183 GEVLALMGPSGSGKTTLLNLLSG 205 (562)
Q Consensus 183 Ge~~alvGpsGsGKSTLl~~L~G 205 (562)
.-.++|+|++|+|||||++.+.+
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 34789999999999999999874
|
| >1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* | Back alignment and structure |
|---|
Probab=94.65 E-value=0.016 Score=52.11 Aligned_cols=23 Identities=26% Similarity=0.502 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~l 207 (562)
.++|+|++|+|||||++.+.+..
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999999743
|
| >2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A* | Back alignment and structure |
|---|
Probab=94.61 E-value=0.018 Score=55.31 Aligned_cols=21 Identities=43% Similarity=0.678 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 008534 185 VLALMGPSGSGKTTLLNLLSG 205 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G 205 (562)
+++|.|++||||||+.+.|+-
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999985
|
| >2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=94.60 E-value=0.018 Score=54.49 Aligned_cols=22 Identities=32% Similarity=0.614 Sum_probs=20.5
Q ss_pred eEEEEECCCCCcHHHHHHHHHc
Q 008534 184 EVLALMGPSGSGKTTLLNLLSG 205 (562)
Q Consensus 184 e~~alvGpsGsGKSTLl~~L~G 205 (562)
.+++|.|+.||||||+.+.|+-
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999985
|
| >2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* | Back alignment and structure |
|---|
Probab=94.59 E-value=0.017 Score=52.25 Aligned_cols=22 Identities=32% Similarity=0.528 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|++|+|||||++.+.+.
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999874
|
| >1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=94.59 E-value=0.021 Score=51.71 Aligned_cols=27 Identities=30% Similarity=0.495 Sum_probs=22.7
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 008534 181 NPGEVLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 181 ~~Ge~~alvGpsGsGKSTLl~~L~G~l 207 (562)
..+..+.|.||+|+|||||++.++..+
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 345678999999999999999998643
|
| >2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14 | Back alignment and structure |
|---|
Probab=94.58 E-value=0.094 Score=51.34 Aligned_cols=53 Identities=25% Similarity=0.291 Sum_probs=43.5
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecC---------CChHHHhcCCEEEEEc
Q 008534 312 INPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQ---------PSSRLFHKFDKLILLG 370 (562)
Q Consensus 312 ~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~---------~~~~i~~~~D~i~vL~ 370 (562)
.+.+++++||.---.| +.+.++.+++.|+.||++-++ ....+..+||.|.-|+
T Consensus 89 ~~~dvViIDEaQF~~~------v~el~~~l~~~gi~VI~~GL~~DF~~~~F~~~~~Ll~~AD~Vtelk 150 (234)
T 2orv_A 89 LGVAVIGIDEGQFFPD------IVEFCEAMANAGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLT 150 (234)
T ss_dssp TTCSEEEESSGGGCTT------HHHHHHHHHHTTCEEEEECCSBCTTSSBCTTGGGGGGGCSEEEECC
T ss_pred ccCCEEEEEchhhhhh------HHHHHHHHHhCCCEEEEEecccccccCCcccHHHHHHhcccEEeee
Confidence 6789999999987754 555555556679999999999 8888889999998875
|
| >3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II} | Back alignment and structure |
|---|
Probab=94.56 E-value=0.017 Score=55.08 Aligned_cols=24 Identities=33% Similarity=0.502 Sum_probs=21.3
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcC
Q 008534 183 GEVLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 183 Ge~~alvGpsGsGKSTLl~~L~G~ 206 (562)
|-.++|+|++||||||+.+.|+-.
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~ 28 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKE 28 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999999853
|
| >3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* | Back alignment and structure |
|---|
Probab=94.56 E-value=0.019 Score=52.73 Aligned_cols=23 Identities=30% Similarity=0.414 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~l 207 (562)
.++|+|++|+|||||++.|.+..
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999999753
|
| >4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* | Back alignment and structure |
|---|
Probab=94.52 E-value=0.02 Score=57.22 Aligned_cols=24 Identities=38% Similarity=0.681 Sum_probs=21.9
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 008534 184 EVLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 184 e~~alvGpsGsGKSTLl~~L~G~l 207 (562)
..+.|.||+|+|||||+++|++.+
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHHH
Confidence 689999999999999999999754
|
| >1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.51 E-value=0.019 Score=54.11 Aligned_cols=23 Identities=43% Similarity=0.702 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~l 207 (562)
.++|+|++|+|||||++.|.+..
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999999853
|
| >2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A* | Back alignment and structure |
|---|
Probab=94.51 E-value=0.034 Score=53.32 Aligned_cols=36 Identities=25% Similarity=0.342 Sum_probs=29.6
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcC
Q 008534 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 170 ~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~ 206 (562)
...+++.-..+ .|..++|+||+|+|||||...|+.+
T Consensus 22 ~~~lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 22 RRSMHGVLVDI-YGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp CCCEESEEEEE-TTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred ceeeeEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 45677766655 6789999999999999999999854
|
| >2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.47 E-value=0.018 Score=53.32 Aligned_cols=23 Identities=22% Similarity=0.294 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~l 207 (562)
.++|+|++|+|||||++.+.+..
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 48999999999999999998743
|
| >2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* | Back alignment and structure |
|---|
Probab=94.46 E-value=0.017 Score=52.61 Aligned_cols=23 Identities=26% Similarity=0.533 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~l 207 (562)
.++|+|++|+|||||++.+.+..
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998743
|
| >3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila} | Back alignment and structure |
|---|
Probab=94.45 E-value=0.018 Score=56.83 Aligned_cols=22 Identities=41% Similarity=0.567 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|++|||||||++.|.|.
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 5899999999999999999984
|
| >1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1 | Back alignment and structure |
|---|
Probab=94.45 E-value=0.02 Score=58.08 Aligned_cols=22 Identities=45% Similarity=0.661 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|++|+|||||++.|.|.
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999984
|
| >1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* | Back alignment and structure |
|---|
Probab=94.44 E-value=0.019 Score=53.35 Aligned_cols=23 Identities=35% Similarity=0.601 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~l 207 (562)
.++|+|++|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998753
|
| >3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.42 E-value=0.019 Score=52.74 Aligned_cols=23 Identities=39% Similarity=0.530 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~l 207 (562)
.++|+|++|+|||||++.|.+..
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48999999999999999999743
|
| >3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A* | Back alignment and structure |
|---|
Probab=94.42 E-value=0.016 Score=57.57 Aligned_cols=22 Identities=45% Similarity=0.582 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|++|+|||||++.|.|.
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~ 31 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLT 31 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999874
|
| >2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* | Back alignment and structure |
|---|
Probab=94.42 E-value=0.019 Score=52.76 Aligned_cols=23 Identities=35% Similarity=0.410 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~l 207 (562)
.++|+|++|+|||||++.+.+..
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998753
|
| >1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* | Back alignment and structure |
|---|
Probab=94.40 E-value=0.019 Score=52.39 Aligned_cols=25 Identities=32% Similarity=0.513 Sum_probs=21.7
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcC
Q 008534 182 PGEVLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 182 ~Ge~~alvGpsGsGKSTLl~~L~G~ 206 (562)
+.=.++|+|++|+|||||++.+.+.
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcC
Confidence 3447899999999999999999874
|
| >2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus} | Back alignment and structure |
|---|
Probab=94.38 E-value=0.019 Score=57.46 Aligned_cols=22 Identities=45% Similarity=0.607 Sum_probs=20.3
Q ss_pred eEEEEECCCCCcHHHHHHHHHc
Q 008534 184 EVLALMGPSGSGKTTLLNLLSG 205 (562)
Q Consensus 184 e~~alvGpsGsGKSTLl~~L~G 205 (562)
.+++|.|++||||||+.+.|+.
T Consensus 76 ~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999983
|
| >3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.38 E-value=0.017 Score=54.02 Aligned_cols=21 Identities=43% Similarity=0.692 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 008534 185 VLALMGPSGSGKTTLLNLLSG 205 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G 205 (562)
.++|+|++|+|||||++.+.|
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGG 45 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999999975
|
| >1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A* | Back alignment and structure |
|---|
Probab=94.37 E-value=0.02 Score=54.37 Aligned_cols=21 Identities=24% Similarity=0.376 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 008534 185 VLALMGPSGSGKTTLLNLLSG 205 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G 205 (562)
.++|.|++||||||+.+.|+-
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999985
|
| >2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.37 E-value=0.018 Score=52.98 Aligned_cols=22 Identities=23% Similarity=0.433 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|++|+|||||++.+.+.
T Consensus 10 ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHcC
Confidence 5899999999999999999874
|
| >3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* | Back alignment and structure |
|---|
Probab=94.34 E-value=0.021 Score=51.98 Aligned_cols=23 Identities=26% Similarity=0.459 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~l 207 (562)
.++|+|++|+|||||++.+.+..
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~~ 42 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQKI 42 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 57899999999999999998753
|
| >4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A* | Back alignment and structure |
|---|
Probab=94.33 E-value=0.025 Score=54.41 Aligned_cols=27 Identities=41% Similarity=0.644 Sum_probs=23.6
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 008534 181 NPGEVLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 181 ~~Ge~~alvGpsGsGKSTLl~~L~G~l 207 (562)
.+|.+++|.|++||||||+++.|+-.+
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l 30 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERL 30 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHH
Confidence 468899999999999999999998644
|
| >1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* | Back alignment and structure |
|---|
Probab=94.33 E-value=0.019 Score=52.68 Aligned_cols=22 Identities=32% Similarity=0.567 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|++|+|||||++.+.+.
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5799999999999999999874
|
| >1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... | Back alignment and structure |
|---|
Probab=94.33 E-value=0.021 Score=51.81 Aligned_cols=22 Identities=27% Similarity=0.330 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|++|+|||||++.+.+.
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
|
| >3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A* | Back alignment and structure |
|---|
Probab=94.32 E-value=0.022 Score=57.79 Aligned_cols=22 Identities=45% Similarity=0.670 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|++|+|||||++.|.|.
T Consensus 12 ~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 12 YVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 8999999999999999999985
|
| >3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=94.32 E-value=0.019 Score=56.06 Aligned_cols=28 Identities=36% Similarity=0.616 Sum_probs=21.4
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 008534 180 VNPGEVLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 180 i~~Ge~~alvGpsGsGKSTLl~~L~G~l 207 (562)
..+|.+++|.|++||||||+.+.|+..+
T Consensus 22 m~~g~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 22 MARGKFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp -CCCCEEEEECCC---CHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3578999999999999999999998644
|
| >1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A | Back alignment and structure |
|---|
Probab=94.32 E-value=0.023 Score=56.70 Aligned_cols=22 Identities=27% Similarity=0.454 Sum_probs=20.3
Q ss_pred eEEEEECCCCCcHHHHHHHHHc
Q 008534 184 EVLALMGPSGSGKTTLLNLLSG 205 (562)
Q Consensus 184 e~~alvGpsGsGKSTLl~~L~G 205 (562)
.++.|+|++||||||+.+.|+-
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999985
|
| >3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni} | Back alignment and structure |
|---|
Probab=94.30 E-value=0.025 Score=54.82 Aligned_cols=27 Identities=30% Similarity=0.457 Sum_probs=23.0
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcC
Q 008534 180 VNPGEVLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 180 i~~Ge~~alvGpsGsGKSTLl~~L~G~ 206 (562)
+++..++.|+||+||||+|..+.|+-.
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 345568999999999999999999953
|
| >2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.29 E-value=0.019 Score=53.03 Aligned_cols=23 Identities=22% Similarity=0.459 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~l 207 (562)
.++|+|++|+|||||++.+.+..
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998743
|
| >1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.28 E-value=0.023 Score=52.83 Aligned_cols=23 Identities=26% Similarity=0.375 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~l 207 (562)
.++|+|++|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999743
|
| >2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A | Back alignment and structure |
|---|
Probab=94.28 E-value=0.019 Score=60.01 Aligned_cols=22 Identities=32% Similarity=0.564 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|++|+|||||++.|++.
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3799999999999999999974
|
| >2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A | Back alignment and structure |
|---|
Probab=94.28 E-value=0.022 Score=55.72 Aligned_cols=22 Identities=27% Similarity=0.480 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|++|+|||||++.|.|.
T Consensus 24 ~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 24 RIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp EEEEEECTTSCHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999974
|
| >1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=94.26 E-value=0.012 Score=59.37 Aligned_cols=24 Identities=21% Similarity=0.479 Sum_probs=18.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHc
Q 008534 182 PGEVLALMGPSGSGKTTLLNLLSG 205 (562)
Q Consensus 182 ~Ge~~alvGpsGsGKSTLl~~L~G 205 (562)
++-+++|.||+||||||+.+.|+.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 345899999999999999999985
|
| >1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A* | Back alignment and structure |
|---|
Probab=94.25 E-value=0.026 Score=54.43 Aligned_cols=24 Identities=38% Similarity=0.562 Sum_probs=21.4
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcC
Q 008534 183 GEVLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 183 Ge~~alvGpsGsGKSTLl~~L~G~ 206 (562)
+..+.|+|+.||||||+.+.|+-.
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~ 39 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKN 39 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999853
|
| >3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C | Back alignment and structure |
|---|
Probab=94.24 E-value=0.027 Score=50.94 Aligned_cols=22 Identities=27% Similarity=0.306 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|++|+|||||++.+.+.
T Consensus 10 ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 10 KCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
|
| >1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* | Back alignment and structure |
|---|
Probab=94.22 E-value=0.023 Score=52.24 Aligned_cols=22 Identities=27% Similarity=0.374 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|++|+|||||++.+.+.
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
|
| >2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=94.20 E-value=0.022 Score=53.81 Aligned_cols=23 Identities=39% Similarity=0.551 Sum_probs=20.7
Q ss_pred eEEEEECCCCCcHHHHHHHHHcC
Q 008534 184 EVLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 184 e~~alvGpsGsGKSTLl~~L~G~ 206 (562)
-.++|+|++|+|||||++.|++.
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 47999999999999999999863
|
| >3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A | Back alignment and structure |
|---|
Probab=94.17 E-value=0.026 Score=55.81 Aligned_cols=22 Identities=45% Similarity=0.658 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|++|+|||||++.|+|.
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~ 28 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGT 28 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 5899999999999999999983
|
| >3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* | Back alignment and structure |
|---|
Probab=94.16 E-value=0.023 Score=52.80 Aligned_cols=23 Identities=26% Similarity=0.478 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~l 207 (562)
.++|+|++|+|||||++.+.+.+
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~ 44 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKM 44 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 68999999999999999999854
|
| >2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* | Back alignment and structure |
|---|
Probab=94.16 E-value=0.025 Score=52.64 Aligned_cols=21 Identities=43% Similarity=0.812 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 008534 185 VLALMGPSGSGKTTLLNLLSG 205 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G 205 (562)
.++|+|++|+|||||++.+.|
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999999986
|
| >2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* | Back alignment and structure |
|---|
Probab=94.14 E-value=0.024 Score=52.28 Aligned_cols=22 Identities=27% Similarity=0.551 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|++|+|||||++.+.+.
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999999974
|
| >2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.14 E-value=0.022 Score=52.72 Aligned_cols=22 Identities=27% Similarity=0.604 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|++|+|||||++.|.+.
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999874
|
| >3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.14 E-value=0.021 Score=53.15 Aligned_cols=23 Identities=22% Similarity=0.273 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~l 207 (562)
.++|+|++|+|||||++.+.+..
T Consensus 26 ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 26 KVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 68999999999999999999753
|
| >4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=94.13 E-value=0.014 Score=55.18 Aligned_cols=22 Identities=36% Similarity=0.622 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|++|+|||||++.|.|.
T Consensus 31 ~i~v~G~~~~GKSslin~l~~~ 52 (223)
T 4dhe_A 31 EIAFAGRSNAGKSTAINVLCNQ 52 (223)
T ss_dssp EEEEEESCHHHHHHHHHHHTTC
T ss_pred EEEEEcCCCCCHHHHHHHHhCC
Confidence 6899999999999999999985
|
| >3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A* | Back alignment and structure |
|---|
Probab=94.12 E-value=0.022 Score=51.66 Aligned_cols=22 Identities=23% Similarity=0.336 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|++|+|||||++.+.+.
T Consensus 8 ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999853
|
| >1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.11 E-value=0.024 Score=51.86 Aligned_cols=23 Identities=30% Similarity=0.533 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~l 207 (562)
.++|+|+.|+|||||++.+.+..
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998753
|
| >3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.09 E-value=0.022 Score=52.49 Aligned_cols=23 Identities=30% Similarity=0.404 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~l 207 (562)
.++|+|++|+|||||++.+.+..
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 58999999999999999999743
|
| >2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A* | Back alignment and structure |
|---|
Probab=94.07 E-value=0.12 Score=49.92 Aligned_cols=53 Identities=21% Similarity=0.273 Sum_probs=41.1
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEec---------CCChHHHhcCCEEEEEc
Q 008534 313 NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIH---------QPSSRLFHKFDKLILLG 370 (562)
Q Consensus 313 ~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH---------~~~~~i~~~~D~i~vL~ 370 (562)
+.+++++||.-- +|+. +++.|+.++..|+.||++-+ .+...+..+||.|.-|+
T Consensus 101 ~~dvViIDEaQF-~~~~----~V~~l~~l~~~~~~Vi~~Gl~~DF~~~~F~~~~~Ll~~AD~Vtel~ 162 (214)
T 2j9r_A 101 EMDVIAIDEVQF-FDGD----IVEVVQVLANRGYRVIVAGLDQDFRGLPFGQVPQLMAIAEHVTKLQ 162 (214)
T ss_dssp SCCEEEECCGGG-SCTT----HHHHHHHHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEECccc-CCHH----HHHHHHHHhhCCCEEEEEecccccccCccccHHHHHHhcccEEeee
Confidence 579999999865 6643 33667777777999999999 66677778888888774
|
| >3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A* | Back alignment and structure |
|---|
Probab=94.06 E-value=0.025 Score=59.90 Aligned_cols=26 Identities=27% Similarity=0.322 Sum_probs=23.1
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHc
Q 008534 180 VNPGEVLALMGPSGSGKTTLLNLLSG 205 (562)
Q Consensus 180 i~~Ge~~alvGpsGsGKSTLl~~L~G 205 (562)
-.+..++.|+|++||||||+.+.|+.
T Consensus 255 ~~~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 255 SPNPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp CSSCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 34678999999999999999999985
|
| >1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* | Back alignment and structure |
|---|
Probab=94.06 E-value=0.025 Score=52.06 Aligned_cols=22 Identities=41% Similarity=0.584 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|+.|+|||||++.+.+.
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
|
| >3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.06 E-value=0.025 Score=52.77 Aligned_cols=23 Identities=35% Similarity=0.471 Sum_probs=20.7
Q ss_pred eEEEEECCCCCcHHHHHHHHHcC
Q 008534 184 EVLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 184 e~~alvGpsGsGKSTLl~~L~G~ 206 (562)
=.++|+|++|+|||||++.+.+.
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 36899999999999999999874
|
| >2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.05 E-value=0.026 Score=52.30 Aligned_cols=22 Identities=32% Similarity=0.551 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|++|+|||||++.+.+.
T Consensus 30 ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 30 KLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999874
|
| >3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A* | Back alignment and structure |
|---|
Probab=94.04 E-value=0.026 Score=56.24 Aligned_cols=22 Identities=50% Similarity=0.809 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|.+|||||||++.|+|.
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~ 26 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGS 26 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999984
|
| >2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* | Back alignment and structure |
|---|
Probab=94.03 E-value=0.023 Score=52.98 Aligned_cols=23 Identities=43% Similarity=0.543 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~l 207 (562)
.++|+|++|+|||||++.|.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998743
|
| >2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.03 E-value=0.025 Score=52.84 Aligned_cols=22 Identities=27% Similarity=0.572 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|++|+|||||++.+.+.
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
|
| >3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A* | Back alignment and structure |
|---|
Probab=94.03 E-value=0.026 Score=52.12 Aligned_cols=23 Identities=30% Similarity=0.368 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~l 207 (562)
.++|+|++|+|||||++.+.+..
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999999753
|
| >2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=94.02 E-value=0.027 Score=53.81 Aligned_cols=22 Identities=27% Similarity=0.575 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|++|+|||||++.+.+.
T Consensus 31 kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 31 TIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEECSTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999873
|
| >1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B* | Back alignment and structure |
|---|
Probab=94.02 E-value=0.033 Score=55.90 Aligned_cols=23 Identities=30% Similarity=0.583 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~l 207 (562)
.++|+|+.|+|||||++.|.|.-
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 69999999999999999999853
|
| >4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927} | Back alignment and structure |
|---|
Probab=94.02 E-value=0.027 Score=51.84 Aligned_cols=22 Identities=32% Similarity=0.486 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|++|+|||||++.+.+.
T Consensus 19 ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 19 QVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999874
|
| >1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.02 E-value=0.025 Score=51.84 Aligned_cols=22 Identities=32% Similarity=0.451 Sum_probs=20.2
Q ss_pred eEEEEECCCCCcHHHHHHHHHc
Q 008534 184 EVLALMGPSGSGKTTLLNLLSG 205 (562)
Q Consensus 184 e~~alvGpsGsGKSTLl~~L~G 205 (562)
=.++|+|++|+|||||++.+.+
T Consensus 17 ~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 17 HKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp EEEEEEESTTSSHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 3689999999999999999996
|
| >2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.99 E-value=0.026 Score=52.42 Aligned_cols=22 Identities=27% Similarity=0.436 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|+.|+|||||++.+.+.
T Consensus 30 ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 30 KIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 6899999999999999999874
|
| >2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.99 E-value=0.019 Score=52.76 Aligned_cols=22 Identities=36% Similarity=0.481 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|++|+|||||++.+.+.
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~ 44 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPS 44 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCG
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999874
|
| >2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=93.98 E-value=0.026 Score=51.09 Aligned_cols=27 Identities=26% Similarity=0.417 Sum_probs=22.5
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 008534 181 NPGEVLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 181 ~~Ge~~alvGpsGsGKSTLl~~L~G~l 207 (562)
..+..+.|.||+|+|||||++.++..+
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 345678999999999999999998643
|
| >2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* | Back alignment and structure |
|---|
Probab=93.98 E-value=0.029 Score=52.77 Aligned_cols=22 Identities=41% Similarity=0.539 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|++|+|||||++.+.+.
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999999974
|
| >2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=93.94 E-value=0.037 Score=52.96 Aligned_cols=59 Identities=22% Similarity=0.192 Sum_probs=38.5
Q ss_pred hCCCEEEEeCCCC----CCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCCh---------HHHhcCCEEEEEc
Q 008534 312 INPSLLFLDEPTS----GLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSS---------RLFHKFDKLILLG 370 (562)
Q Consensus 312 ~~P~iLlLDEPTs----gLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~---------~i~~~~D~i~vL~ 370 (562)
.+|+++++|--+. .-|.....+++..|+.++++ |.++++++|.... .+...+|-|+.|+
T Consensus 134 ~~~~~vviD~~~~l~~~~~~~~~~~~~~~~L~~~a~~~~i~vi~~~q~~~~~~~~~~~~~~~~~~aD~vi~l~ 206 (251)
T 2zts_A 134 INAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp TTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEE
T ss_pred cCCcEEEEEcHHHHhhhccChHHHHHHHHHHHHHHHHcCCCeEEEEEEecccccccccCCceeEEeeEEEEEE
Confidence 4788999986432 11444556777778777654 8999999885321 1234678887774
|
| >2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A | Back alignment and structure |
|---|
Probab=93.92 E-value=0.022 Score=51.53 Aligned_cols=22 Identities=27% Similarity=0.481 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|++|+|||||++.+.+.
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999874
|
| >3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A* | Back alignment and structure |
|---|
Probab=93.92 E-value=0.03 Score=54.96 Aligned_cols=26 Identities=23% Similarity=0.495 Sum_probs=23.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 008534 182 PGEVLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 182 ~Ge~~alvGpsGsGKSTLl~~L~G~l 207 (562)
+|.+++|.|++||||||+++.|+..+
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l 51 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETL 51 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999999999998654
|
| >2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* | Back alignment and structure |
|---|
Probab=93.90 E-value=0.024 Score=51.84 Aligned_cols=22 Identities=32% Similarity=0.449 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|++|+|||||++.+.+.
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5799999999999999999974
|
| >2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=93.90 E-value=0.025 Score=53.24 Aligned_cols=23 Identities=35% Similarity=0.599 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~l 207 (562)
.++|+|++|+|||||++.+.+..
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~~ 50 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQGL 50 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 58999999999999999888643
|
| >2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.84 E-value=0.031 Score=51.76 Aligned_cols=22 Identities=27% Similarity=0.369 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|++|+|||||++.+.+.
T Consensus 22 ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 22 KCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp EEEEECSTTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999999864
|
| >2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=93.82 E-value=0.027 Score=52.77 Aligned_cols=22 Identities=36% Similarity=0.520 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|++|+|||||++.+.+.
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6899999999999999999974
|
| >3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228} | Back alignment and structure |
|---|
Probab=93.80 E-value=0.031 Score=57.82 Aligned_cols=24 Identities=29% Similarity=0.537 Sum_probs=21.5
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 008534 184 EVLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 184 e~~alvGpsGsGKSTLl~~L~G~l 207 (562)
.+++|+||+|||||||.+.|+..+
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 489999999999999999999644
|
| >3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.77 E-value=0.031 Score=51.52 Aligned_cols=22 Identities=32% Similarity=0.528 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|++|+|||||++.+.+.
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHhC
Confidence 6899999999999999888864
|
| >4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A* | Back alignment and structure |
|---|
Probab=93.76 E-value=0.034 Score=53.58 Aligned_cols=26 Identities=31% Similarity=0.466 Sum_probs=23.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 008534 182 PGEVLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 182 ~Ge~~alvGpsGsGKSTLl~~L~G~l 207 (562)
+|.+++|.|++||||||+++.|...+
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l 27 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETL 27 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 48899999999999999999998654
|
| >3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A* | Back alignment and structure |
|---|
Probab=93.76 E-value=0.034 Score=53.24 Aligned_cols=21 Identities=38% Similarity=0.719 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 008534 185 VLALMGPSGSGKTTLLNLLSG 205 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G 205 (562)
++.|+||+||||+|..+.|+-
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999995
|
| >3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A | Back alignment and structure |
|---|
Probab=93.72 E-value=0.038 Score=56.62 Aligned_cols=25 Identities=36% Similarity=0.644 Sum_probs=22.0
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 008534 183 GEVLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 183 Ge~~alvGpsGsGKSTLl~~L~G~l 207 (562)
+.+++|+||+|||||||...|+-.+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4589999999999999999999643
|
| >2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 | Back alignment and structure |
|---|
Probab=93.71 E-value=0.034 Score=52.14 Aligned_cols=22 Identities=32% Similarity=0.356 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|++|+|||||++.+.+.
T Consensus 9 ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 9 AVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999874
|
| >2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.70 E-value=0.031 Score=52.80 Aligned_cols=22 Identities=36% Similarity=0.643 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|++|+|||||++.+.+.
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
Probab=93.70 E-value=0.038 Score=51.73 Aligned_cols=42 Identities=12% Similarity=0.195 Sum_probs=29.3
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCC
Q 008534 313 NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPS 356 (562)
Q Consensus 313 ~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~ 356 (562)
+|.+|++||.-. +|+.....+++.+.+. ..+..+|++++++.
T Consensus 126 ~~~vlviDe~~~-l~~~~~~~l~~~l~~~-~~~~~~i~~t~~~~ 167 (250)
T 1njg_A 126 RFKVYLIDEVHM-LSRHSFNALLKTLEEP-PEHVKFLLATTDPQ 167 (250)
T ss_dssp SSEEEEEETGGG-SCHHHHHHHHHHHHSC-CTTEEEEEEESCGG
T ss_pred CceEEEEECccc-ccHHHHHHHHHHHhcC-CCceEEEEEeCChH
Confidence 578999999765 7877777766666432 12567788887753
|
| >1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=93.67 E-value=0.029 Score=52.90 Aligned_cols=23 Identities=30% Similarity=0.521 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~l 207 (562)
.++|+|++|+|||||++.+.+..
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999853
|
| >2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=93.65 E-value=0.038 Score=53.53 Aligned_cols=25 Identities=28% Similarity=0.437 Sum_probs=22.6
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 008534 183 GEVLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 183 Ge~~alvGpsGsGKSTLl~~L~G~l 207 (562)
|.+++|-|+.||||||+.+.|+-.+
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 6789999999999999999999654
|
| >2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* | Back alignment and structure |
|---|
Probab=93.63 E-value=0.021 Score=51.88 Aligned_cols=22 Identities=45% Similarity=0.557 Sum_probs=9.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|++|+|||||++.+.+.
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999863
|
| >3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis} | Back alignment and structure |
|---|
Probab=93.63 E-value=0.041 Score=53.47 Aligned_cols=27 Identities=37% Similarity=0.439 Sum_probs=23.8
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 008534 181 NPGEVLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 181 ~~Ge~~alvGpsGsGKSTLl~~L~G~l 207 (562)
.+|.+++|.|++||||||+.+.|+..+
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l 45 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYL 45 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 358899999999999999999998644
|
| >3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A* | Back alignment and structure |
|---|
Probab=93.63 E-value=0.036 Score=53.57 Aligned_cols=27 Identities=33% Similarity=0.529 Sum_probs=24.4
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 008534 181 NPGEVLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 181 ~~Ge~~alvGpsGsGKSTLl~~L~G~l 207 (562)
.+|.++++.|++||||||+.+.|+-.+
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l 29 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKL 29 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 368899999999999999999999755
|
| >2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A* | Back alignment and structure |
|---|
Probab=93.63 E-value=0.042 Score=54.47 Aligned_cols=23 Identities=30% Similarity=0.560 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~l 207 (562)
.++|+|.+|+|||||++.|.|.-
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCC
Confidence 69999999999999999999854
|
| >2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=93.61 E-value=0.033 Score=52.74 Aligned_cols=24 Identities=29% Similarity=0.506 Sum_probs=21.4
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcC
Q 008534 183 GEVLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 183 Ge~~alvGpsGsGKSTLl~~L~G~ 206 (562)
+-+++|+|++||||||+.+.|+..
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~ 26 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASE 26 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 357999999999999999999963
|
| >1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ... | Back alignment and structure |
|---|
Probab=93.56 E-value=0.026 Score=55.53 Aligned_cols=27 Identities=22% Similarity=0.352 Sum_probs=23.4
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 008534 181 NPGEVLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 181 ~~Ge~~alvGpsGsGKSTLl~~L~G~l 207 (562)
+++.+++|.|+.||||||+.+.|+..+
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhc
Confidence 567899999999999999999999644
|
| >2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... | Back alignment and structure |
|---|
Probab=93.52 E-value=0.032 Score=51.98 Aligned_cols=22 Identities=36% Similarity=0.536 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|++|+|||||++.+.+.
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999974
|
| >2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* | Back alignment and structure |
|---|
Probab=93.51 E-value=0.031 Score=51.91 Aligned_cols=22 Identities=32% Similarity=0.398 Sum_probs=20.1
Q ss_pred eEEEEECCCCCcHHHHHHHHHc
Q 008534 184 EVLALMGPSGSGKTTLLNLLSG 205 (562)
Q Consensus 184 e~~alvGpsGsGKSTLl~~L~G 205 (562)
-.++|+|++|+|||||++.+.+
T Consensus 30 ~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 30 MRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp EEEEEEESTTSSHHHHHHHHCS
T ss_pred cEEEEECCCCCCHHHHHHHHHh
Confidence 3689999999999999999975
|
| >3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A | Back alignment and structure |
|---|
Probab=93.51 E-value=0.038 Score=56.75 Aligned_cols=24 Identities=42% Similarity=0.639 Sum_probs=21.5
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 008534 184 EVLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 184 e~~alvGpsGsGKSTLl~~L~G~l 207 (562)
.+++|+||+|||||||.+.|+..+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 479999999999999999999743
|
| >2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=93.39 E-value=0.036 Score=51.03 Aligned_cols=22 Identities=27% Similarity=0.347 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|++|+|||||++.+.+.
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999874
|
| >3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=93.38 E-value=0.17 Score=57.53 Aligned_cols=23 Identities=35% Similarity=0.686 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~l 207 (562)
.+.|.||+|+|||+|.+.|+..+
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l 545 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESI 545 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999999643
|
| >3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* | Back alignment and structure |
|---|
Probab=93.32 E-value=0.041 Score=54.15 Aligned_cols=23 Identities=30% Similarity=0.577 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~l 207 (562)
.++|+|++|+|||||++.|.|.-
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999843
|
| >1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* | Back alignment and structure |
|---|
Probab=93.30 E-value=0.041 Score=54.37 Aligned_cols=23 Identities=30% Similarity=0.588 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~l 207 (562)
.++++|++|+|||||++.|.|..
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999853
|
| >1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=93.29 E-value=0.048 Score=58.80 Aligned_cols=35 Identities=26% Similarity=0.432 Sum_probs=29.6
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcC
Q 008534 171 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 171 ~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.+++.+ ..+-+|+.++|+||+|+|||||++.|+..
T Consensus 140 r~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~ 174 (473)
T 1sky_E 140 KVVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHN 174 (473)
T ss_dssp HHHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHH
T ss_pred hHHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhh
Confidence 456666 56778999999999999999999999863
|
| >2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A* | Back alignment and structure |
|---|
Probab=93.27 E-value=0.04 Score=52.18 Aligned_cols=23 Identities=39% Similarity=0.570 Sum_probs=20.4
Q ss_pred eEEEEECCCCCcHHHHHHHHHcC
Q 008534 184 EVLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 184 e~~alvGpsGsGKSTLl~~L~G~ 206 (562)
-.++|+|++|+|||||++-++..
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 47899999999999999998863
|
| >2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=93.26 E-value=0.048 Score=52.13 Aligned_cols=22 Identities=41% Similarity=0.745 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|++|+|||||++.+.|.
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5999999999999999999873
|
| >3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=93.15 E-value=0.2 Score=62.72 Aligned_cols=36 Identities=31% Similarity=0.405 Sum_probs=30.5
Q ss_pred ceeeceEE--EEeCCeEEEEECCCCCcHHHHHHHHHcC
Q 008534 171 DILNGITG--SVNPGEVLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 171 ~iL~~vs~--~i~~Ge~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.-|+.+.. =+++|+++.|.|++|+|||||+..++..
T Consensus 718 ~eLD~llggGGl~~G~lilIaG~PG~GKTtLalqlA~~ 755 (2050)
T 3cmu_A 718 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAA 755 (2050)
T ss_dssp HHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred hHHHHHhccCCcCCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 34666664 6999999999999999999999988863
|
| >4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=93.10 E-value=0.021 Score=53.77 Aligned_cols=22 Identities=36% Similarity=0.576 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|++|+|||||++.|.+.
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~ 34 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDG 34 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999998863
|
| >3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.07 E-value=0.046 Score=51.86 Aligned_cols=23 Identities=35% Similarity=0.577 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~l 207 (562)
.++|+|++|+|||||++.+.+..
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999999743
|
| >2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.05 E-value=0.043 Score=51.27 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|++|+|||||++.+.+.
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhhC
Confidence 5899999999999999999874
|
| >3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A | Back alignment and structure |
|---|
Probab=92.97 E-value=0.059 Score=55.09 Aligned_cols=24 Identities=42% Similarity=0.519 Sum_probs=21.4
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcC
Q 008534 183 GEVLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 183 Ge~~alvGpsGsGKSTLl~~L~G~ 206 (562)
..+++|+||+|||||||...|+-.
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECCCccCHHHHHHHHHHh
Confidence 357999999999999999999964
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=92.96 E-value=0.042 Score=58.76 Aligned_cols=22 Identities=36% Similarity=0.736 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|++|+|||||++.|.|.
T Consensus 25 ~V~lvG~~nvGKSTL~n~l~~~ 46 (456)
T 4dcu_A 25 VVAIVGRPNVGKSTIFNRIAGE 46 (456)
T ss_dssp EEEEECSSSSSHHHHHHHHEEE
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 7999999999999999999983
|
| >2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} | Back alignment and structure |
|---|
Probab=92.96 E-value=0.03 Score=51.29 Aligned_cols=22 Identities=27% Similarity=0.368 Sum_probs=19.8
Q ss_pred eEEEEECCCCCcHHHHHHHHHc
Q 008534 184 EVLALMGPSGSGKTTLLNLLSG 205 (562)
Q Consensus 184 e~~alvGpsGsGKSTLl~~L~G 205 (562)
=.++|+|++|+|||||++.+.+
T Consensus 23 ~~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 23 IRVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp EEEEEEEETTSSHHHHHHHTCC
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 3699999999999999999975
|
| >3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=92.91 E-value=0.087 Score=49.45 Aligned_cols=35 Identities=17% Similarity=0.041 Sum_probs=27.5
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHc
Q 008534 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSG 205 (562)
Q Consensus 170 ~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G 205 (562)
+..+|..-.. -.|.-++|.|+||+|||||...|..
T Consensus 4 ~~~lHas~v~-v~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 4 KQTWHANFLV-IDKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp CEEEESEEEE-ETTEEEEEEESSSSSHHHHHHHHHH
T ss_pred cEEEEEEEEE-ECCEEEEEEcCCCCCHHHHHHHHHH
Confidence 3456655554 4578999999999999999988874
|
| >2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A* | Back alignment and structure |
|---|
Probab=92.89 E-value=0.013 Score=57.35 Aligned_cols=30 Identities=33% Similarity=0.701 Sum_probs=23.3
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHHcC
Q 008534 175 GITGSVNPGEVLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 175 ~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~ 206 (562)
++....+.| +.|.||+|+|||||++.|+..
T Consensus 38 ~~~~~~~~~--vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 38 NLGAKIPKG--VLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp HHSCCCCSC--CCCBCSSCSSHHHHHHHHHHH
T ss_pred HCCCCCCce--EEEECCCCCcHHHHHHHHHHH
Confidence 333444455 779999999999999999974
|
| >2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C | Back alignment and structure |
|---|
Probab=92.88 E-value=0.021 Score=52.82 Aligned_cols=22 Identities=23% Similarity=0.607 Sum_probs=4.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|++|+|||||++.+.+.
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999999874
|
| >4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A* | Back alignment and structure |
|---|
Probab=92.81 E-value=0.048 Score=51.06 Aligned_cols=23 Identities=26% Similarity=0.277 Sum_probs=20.4
Q ss_pred eEEEEECCCCCcHHHHHHHHHcC
Q 008534 184 EVLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 184 e~~alvGpsGsGKSTLl~~L~G~ 206 (562)
=.++|+|++|+|||||++.+.+.
T Consensus 31 ~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 31 IKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHHhC
Confidence 36899999999999999999864
|
| >3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* | Back alignment and structure |
|---|
Probab=92.75 E-value=0.055 Score=53.73 Aligned_cols=24 Identities=29% Similarity=0.589 Sum_probs=21.9
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 008534 184 EVLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 184 e~~alvGpsGsGKSTLl~~L~G~l 207 (562)
-.++++|.+|+|||||++.|.|..
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~ 123 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKR 123 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTC
T ss_pred hheEEeCCCCCCHHHHHHHHhccc
Confidence 578999999999999999999854
|
| >3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* | Back alignment and structure |
|---|
Probab=92.73 E-value=0.054 Score=51.24 Aligned_cols=22 Identities=36% Similarity=0.575 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|++|+|||||++.+.+.
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6899999999999999999874
|
| >2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=92.65 E-value=0.052 Score=50.76 Aligned_cols=22 Identities=23% Similarity=0.297 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|++|+|||||++.+.+.
T Consensus 11 ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
|
| >3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A* | Back alignment and structure |
|---|
Probab=92.48 E-value=0.066 Score=56.67 Aligned_cols=24 Identities=29% Similarity=0.570 Sum_probs=21.2
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 008534 184 EVLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 184 e~~alvGpsGsGKSTLl~~L~G~l 207 (562)
.+++|+||+|||||||...|+-.+
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHHC
Confidence 478999999999999999998643
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=92.48 E-value=0.18 Score=54.59 Aligned_cols=71 Identities=17% Similarity=0.190 Sum_probs=52.7
Q ss_pred cCCCChhHHHHHH--HHHHHhh---------------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCC
Q 008534 293 VRGVSGGERKRVC--IGNEIII---------------NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQP 355 (562)
Q Consensus 293 ~~~LSGGqrqRv~--IAraLl~---------------~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~ 355 (562)
..++||||+|-.- |+.+++. .-++++|||+ +-+|.......++.++++ |.=+|+++=.
T Consensus 377 ~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~l---glQliiatP~- 451 (483)
T 3euj_A 377 SSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERL---DMQLLIAAPE- 451 (483)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHT---TCEEEEEESS-
T ss_pred cCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHc---CCEEEEECcc-
Confidence 4579999999643 3334332 1257999999 999999999999999865 6667777755
Q ss_pred ChHHHhcCCEEEEEc
Q 008534 356 SSRLFHKFDKLILLG 370 (562)
Q Consensus 356 ~~~i~~~~D~i~vL~ 370 (562)
.+....|.++.+-
T Consensus 452 --~i~p~v~~~~~~~ 464 (483)
T 3euj_A 452 --NISPERGTTYKLV 464 (483)
T ss_dssp --SCCCSSSEEEECC
T ss_pred --hhhhccCceEEEE
Confidence 2456788888774
|
| >2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=92.48 E-value=0.065 Score=49.56 Aligned_cols=41 Identities=12% Similarity=0.212 Sum_probs=27.3
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCC
Q 008534 313 NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQP 355 (562)
Q Consensus 313 ~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~ 355 (562)
++.+|++||. ..+++.....+.+.+.+.. .+..+|+++..+
T Consensus 102 ~~~vliiDe~-~~l~~~~~~~l~~~l~~~~-~~~~~i~~~~~~ 142 (226)
T 2chg_A 102 PFKIIFLDEA-DALTADAQAALRRTMEMYS-KSCRFILSCNYV 142 (226)
T ss_dssp SCEEEEEETG-GGSCHHHHHHHHHHHHHTT-TTEEEEEEESCG
T ss_pred CceEEEEeCh-hhcCHHHHHHHHHHHHhcC-CCCeEEEEeCCh
Confidence 6789999995 4567776666666665532 245566666654
|
| >3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=92.40 E-value=0.072 Score=47.44 Aligned_cols=41 Identities=15% Similarity=0.168 Sum_probs=28.2
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCC
Q 008534 313 NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQP 355 (562)
Q Consensus 313 ~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~ 355 (562)
+..+|++||. ..|++..+..+++.|... ..+..+|++|..+
T Consensus 76 ~~g~l~ldei-~~l~~~~q~~Ll~~l~~~-~~~~~~I~~t~~~ 116 (145)
T 3n70_A 76 QGGTLVLSHP-EHLTREQQYHLVQLQSQE-HRPFRLIGIGDTS 116 (145)
T ss_dssp TTSCEEEECG-GGSCHHHHHHHHHHHHSS-SCSSCEEEEESSC
T ss_pred CCcEEEEcCh-HHCCHHHHHHHHHHHhhc-CCCEEEEEECCcC
Confidence 3467999998 468888888888887332 1245677777664
|
| >2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A* | Back alignment and structure |
|---|
Probab=92.38 E-value=0.073 Score=49.80 Aligned_cols=52 Identities=17% Similarity=0.282 Sum_probs=35.0
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCC---------hHHHhcCCEEEEE
Q 008534 313 NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPS---------SRLFHKFDKLILL 369 (562)
Q Consensus 313 ~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~---------~~i~~~~D~i~vL 369 (562)
+++++++||.-- +|+ .+++.|+.+++.|..||++.++.. ..+...+|.|.-|
T Consensus 76 ~~dvviIDE~Q~-~~~----~~~~~l~~l~~~~~~Vi~~Gl~~~f~~~~f~~~~~ll~~ad~v~~l 136 (184)
T 2orw_A 76 DTRGVFIDEVQF-FNP----SLFEVVKDLLDRGIDVFCAGLDLTHKQNPFETTALLLSLADTVIKK 136 (184)
T ss_dssp TEEEEEECCGGG-SCT----THHHHHHHHHHTTCEEEEEEESBCTTSCBCHHHHHHHHHCSEEEEC
T ss_pred CCCEEEEECccc-CCH----HHHHHHHHHHHCCCCEEEEeeccccccCCccchHHHHHHhhheEEe
Confidence 578999999743 543 356677777777899999888533 2344456666444
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=92.37 E-value=8.4e-05 Score=74.27 Aligned_cols=72 Identities=18% Similarity=0.178 Sum_probs=53.0
Q ss_pred ccccccccCcccCCCChhHHHHHHHHHHHhhCCCE--EEEeCCCCCCCHHHH--------HHHHHHHHHHHHCCcEEEEE
Q 008534 282 RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSL--LFLDEPTSGLDSTTA--------LRIVQMLQDIAEAGKTVVTT 351 (562)
Q Consensus 282 ~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~i--LlLDEPTsgLD~~~~--------~~i~~~L~~l~~~g~Tvii~ 351 (562)
...++.++.+.++ +|+| ||++|+++|+.+|++ +|+||+|+.||...+ ..+.+...++..+|+|.+.+
T Consensus 160 ~~l~~vi~qrl~~-~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~t~~~~ 236 (261)
T 2eyu_A 160 FILQGIISQRLLP-KIGG--GRVLAYGLLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYKQGLITLED 236 (261)
T ss_dssp HHEEEEEEEEEEC-CSSS--SSEEEEEEECCCHHHHHHHHHTCHHHHHHHHHHSCSCTTEECHHHHHHHHHHTTSSCHHH
T ss_pred HHhhEEEEEEeEe-cCCC--CEEEEEEEecCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHHcCCCCHHH
Confidence 3456666654444 7888 899999999999999 999999999998743 22444444445569988888
Q ss_pred ecCCC
Q 008534 352 IHQPS 356 (562)
Q Consensus 352 tH~~~ 356 (562)
.|+.+
T Consensus 237 a~r~~ 241 (261)
T 2eyu_A 237 AMEAS 241 (261)
T ss_dssp HHHHC
T ss_pred HHHHh
Confidence 88754
|
| >2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A* | Back alignment and structure |
|---|
Probab=92.35 E-value=0.082 Score=54.34 Aligned_cols=28 Identities=29% Similarity=0.447 Sum_probs=25.6
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHc
Q 008534 178 GSVNPGEVLALMGPSGSGKTTLLNLLSG 205 (562)
Q Consensus 178 ~~i~~Ge~~alvGpsGsGKSTLl~~L~G 205 (562)
+-+.+|.++.|.||+|+|||||...++.
T Consensus 118 GGi~~gsviLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 118 GHRYASGMVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp TEEEESEEEEEECSCSSSHHHHHHHHHH
T ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 5688999999999999999999999884
|
| >3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* | Back alignment and structure |
|---|
Probab=92.34 E-value=0.07 Score=53.11 Aligned_cols=27 Identities=33% Similarity=0.548 Sum_probs=22.6
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 008534 181 NPGEVLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 181 ~~Ge~~alvGpsGsGKSTLl~~L~G~l 207 (562)
+++.-+.|.||+|+|||||.+.++..+
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 345579999999999999999988643
|
| >1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=92.21 E-value=0.065 Score=54.20 Aligned_cols=42 Identities=7% Similarity=0.135 Sum_probs=31.2
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCC
Q 008534 313 NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPS 356 (562)
Q Consensus 313 ~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~ 356 (562)
++.|+++|| ...|++.....+.+.+.+... ...+|++++++.
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~~-~~~~il~~~~~~ 174 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYSG-VTRFCLICNYVT 174 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTTT-TEEEEEEESCGG
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcCC-CceEEEEeCchh
Confidence 567999999 788999888888888776532 345666776654
|
| >3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A* | Back alignment and structure |
|---|
Probab=91.96 E-value=0.085 Score=53.30 Aligned_cols=24 Identities=42% Similarity=0.704 Sum_probs=21.2
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcC
Q 008534 183 GEVLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 183 Ge~~alvGpsGsGKSTLl~~L~G~ 206 (562)
+-.++|+|++|+|||||++.+.+.
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 446899999999999999998875
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=91.84 E-value=0.099 Score=54.08 Aligned_cols=29 Identities=10% Similarity=0.259 Sum_probs=22.8
Q ss_pred CCChhHHHHHHHHHHH---hh--CCCEEEEeCCC
Q 008534 295 GVSGGERKRVCIGNEI---II--NPSLLFLDEPT 323 (562)
Q Consensus 295 ~LSGGqrqRv~IAraL---l~--~P~iLlLDEPT 323 (562)
.+|+||+||..|+++| +. +++++++|||+
T Consensus 296 ~~sld~~~r~~l~~~l~~l~~~~~~~ililde~~ 329 (365)
T 1lw7_A 296 RSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESPS 329 (365)
T ss_dssp -----CCSHHHHHHHHHHHHHGGGCCCEEEECSS
T ss_pred cCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCCC
Confidence 4899999999999999 77 89999999997
|
| >1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* | Back alignment and structure |
|---|
Probab=91.77 E-value=0.092 Score=51.58 Aligned_cols=25 Identities=36% Similarity=0.470 Sum_probs=21.9
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHc
Q 008534 181 NPGEVLALMGPSGSGKTTLLNLLSG 205 (562)
Q Consensus 181 ~~Ge~~alvGpsGsGKSTLl~~L~G 205 (562)
.+..-+.|.||+|+|||||.+.|+.
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~ 86 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAE 86 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHH
Confidence 4455789999999999999999996
|
| >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.75 E-value=0.093 Score=53.41 Aligned_cols=28 Identities=29% Similarity=0.500 Sum_probs=23.7
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 008534 180 VNPGEVLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 180 i~~Ge~~alvGpsGsGKSTLl~~L~G~l 207 (562)
..+..-+.|.||+|+|||||++.++..+
T Consensus 42 ~~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 42 RTPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCCceEEEECCCCccHHHHHHHHHHHc
Confidence 3456678999999999999999999743
|
| >3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} | Back alignment and structure |
|---|
Probab=91.70 E-value=0.09 Score=51.36 Aligned_cols=21 Identities=38% Similarity=0.624 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 008534 185 VLALMGPSGSGKTTLLNLLSG 205 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G 205 (562)
.++|+||+||||||+.+.|+-
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred ceeeECCCCCCHHHHHHHHHH
Confidence 589999999999999999985
|
| >4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A* | Back alignment and structure |
|---|
Probab=91.64 E-value=0.11 Score=49.54 Aligned_cols=25 Identities=44% Similarity=0.729 Sum_probs=22.4
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 008534 183 GEVLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 183 Ge~~alvGpsGsGKSTLl~~L~G~l 207 (562)
|.+++|=|+-||||||+++.|+-.+
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L 26 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRL 26 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHH
Confidence 5689999999999999999999755
|
| >3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D* | Back alignment and structure |
|---|
Probab=91.52 E-value=0.095 Score=53.53 Aligned_cols=27 Identities=26% Similarity=0.450 Sum_probs=23.7
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 008534 181 NPGEVLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 181 ~~Ge~~alvGpsGsGKSTLl~~L~G~l 207 (562)
.+|..+.|.||+|+|||||++.++..+
T Consensus 68 ~~~~~vLl~GppGtGKT~la~~la~~l 94 (368)
T 3uk6_A 68 IAGRAVLIAGQPGTGKTAIAMGMAQAL 94 (368)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 456789999999999999999999644
|
| >3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A* | Back alignment and structure |
|---|
Probab=91.51 E-value=0.11 Score=53.76 Aligned_cols=26 Identities=27% Similarity=0.436 Sum_probs=22.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 008534 182 PGEVLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 182 ~Ge~~alvGpsGsGKSTLl~~L~G~l 207 (562)
..-+++|+|++|+|||||++.|++.+
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 34589999999999999999998643
|
| >2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A | Back alignment and structure |
|---|
Probab=91.51 E-value=0.086 Score=54.32 Aligned_cols=23 Identities=30% Similarity=0.560 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~l 207 (562)
.++|+|.+|+|||||++.|.|.-
T Consensus 33 ~I~vvG~~~~GKSSLln~L~g~~ 55 (353)
T 2x2e_A 33 QIAVVGGQSAGKSSVLENFVGRD 55 (353)
T ss_dssp EEEEECBTTSSHHHHHHTTTTSC
T ss_pred eEEEECCCCCCHHHHHHHHhCCC
Confidence 69999999999999999999853
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=91.47 E-value=0.084 Score=56.08 Aligned_cols=22 Identities=36% Similarity=0.736 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|++|+|||||++.|+|.
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~~ 26 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAGE 26 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999984
|
| >3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A | Back alignment and structure |
|---|
Probab=91.43 E-value=0.091 Score=52.72 Aligned_cols=24 Identities=25% Similarity=0.397 Sum_probs=20.7
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcC
Q 008534 183 GEVLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 183 Ge~~alvGpsGsGKSTLl~~L~G~ 206 (562)
...+.|.||+|+|||+|.+.|+..
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 346788899999999999999963
|
| >3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.74 E-value=0.036 Score=51.64 Aligned_cols=21 Identities=29% Similarity=0.341 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 008534 185 VLALMGPSGSGKTTLLNLLSG 205 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G 205 (562)
.++|+|++|+|||||++.+.+
T Consensus 32 ki~v~G~~~~GKSsli~~l~~ 52 (204)
T 3th5_A 32 KCVVVGDGAVGKTCLLISYTT 52 (204)
Confidence 689999999999999988875
|
| >1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=91.36 E-value=0.11 Score=52.06 Aligned_cols=25 Identities=28% Similarity=0.380 Sum_probs=21.9
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 008534 183 GEVLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 183 Ge~~alvGpsGsGKSTLl~~L~G~l 207 (562)
+-.++|+|.+|+|||||+|.|.|..
T Consensus 120 ~~~v~~vG~~nvGKSsliN~l~~~~ 144 (282)
T 1puj_A 120 AIRALIIGIPNVGKSTLINRLAKKN 144 (282)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CceEEEEecCCCchHHHHHHHhcCc
Confidence 3468999999999999999999853
|
| >1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A* | Back alignment and structure |
|---|
Probab=91.31 E-value=0.099 Score=51.73 Aligned_cols=25 Identities=28% Similarity=0.509 Sum_probs=21.3
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 008534 183 GEVLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 183 Ge~~alvGpsGsGKSTLl~~L~G~l 207 (562)
+.-+.|.||+|+|||||++.|+..+
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 4468899999999999999999643
|
| >3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ... | Back alignment and structure |
|---|
Probab=91.24 E-value=0.068 Score=50.46 Aligned_cols=22 Identities=45% Similarity=0.789 Sum_probs=19.0
Q ss_pred EEEEECCCCCcHHHHHHH-HHcC
Q 008534 185 VLALMGPSGSGKTTLLNL-LSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~-L~G~ 206 (562)
.++|+|++|+|||||++. +.|.
T Consensus 17 ki~v~G~~~~GKSsli~~~~~~~ 39 (221)
T 3gj0_A 17 KLVLVGDGGTGKTTFVKRHLTGE 39 (221)
T ss_dssp EEEEEECTTSSHHHHHTTBHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 479999999999999998 6553
|
| >3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C | Back alignment and structure |
|---|
Probab=91.24 E-value=0.11 Score=52.50 Aligned_cols=26 Identities=31% Similarity=0.594 Sum_probs=22.4
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcC
Q 008534 181 NPGEVLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 181 ~~Ge~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.+..-+.|.||+|+|||+|++.|+..
T Consensus 49 ~~~~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 49 KPTSGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CCCCEEEEECSSSSCHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 35567899999999999999999963
|
| >3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A | Back alignment and structure |
|---|
Probab=91.16 E-value=0.1 Score=53.74 Aligned_cols=26 Identities=42% Similarity=0.606 Sum_probs=22.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 008534 182 PGEVLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 182 ~Ge~~alvGpsGsGKSTLl~~L~G~l 207 (562)
++.-+.|.||+|+||||+.++|+..+
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 34568899999999999999999643
|
| >1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=91.12 E-value=0.097 Score=55.16 Aligned_cols=22 Identities=18% Similarity=0.335 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|.+++|||||++.|+|.
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~ 23 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLV 23 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 4799999999999999999985
|
| >2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3} | Back alignment and structure |
|---|
Probab=91.12 E-value=0.12 Score=52.27 Aligned_cols=23 Identities=35% Similarity=0.439 Sum_probs=21.5
Q ss_pred CeEEEEECCCCCcHHHHHHHHHc
Q 008534 183 GEVLALMGPSGSGKTTLLNLLSG 205 (562)
Q Consensus 183 Ge~~alvGpsGsGKSTLl~~L~G 205 (562)
+.-+.|.||+|+|||+|+++|+.
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~ 174 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAH 174 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 67899999999999999999986
|
| >3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP} | Back alignment and structure |
|---|
Probab=90.98 E-value=0.092 Score=56.51 Aligned_cols=25 Identities=36% Similarity=0.534 Sum_probs=22.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcC
Q 008534 182 PGEVLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 182 ~Ge~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.|=.++|+|++|+|||||++.|+|.
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~ 247 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQS 247 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 4456999999999999999999984
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 562 | ||||
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 9e-43 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 4e-42 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 2e-40 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 3e-40 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 6e-39 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 6e-39 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 6e-38 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 2e-37 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 3e-37 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 3e-37 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 4e-37 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 1e-35 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 2e-35 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 8e-34 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 2e-32 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 4e-31 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 7e-31 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 4e-30 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 8e-29 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 2e-25 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 7e-11 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 1e-10 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 1e-09 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 1e-05 | |
| d1znwa1 | 182 | c.37.1.1 (A:20-201) Guanylate kinase {Mycobacteriu | 2e-05 | |
| d1w1wa_ | 427 | c.37.1.12 (A:) Smc head domain {Baker's yeast (Sac | 5e-05 | |
| d1qhxa_ | 178 | c.37.1.3 (A:) Chloramphenicol phosphotransferase { | 9e-05 | |
| d1zp6a1 | 176 | c.37.1.25 (A:6-181) Hypothetical protein Atu3015 { | 1e-04 | |
| d2i3ba1 | 189 | c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 | 2e-04 | |
| d1s96a_ | 205 | c.37.1.1 (A:) Guanylate kinase {Escherichia coli [ | 4e-04 | |
| d1np6a_ | 170 | c.37.1.10 (A:) Molybdopterin-guanine dinucleotide | 6e-04 | |
| d1knqa_ | 171 | c.37.1.17 (A:) Gluconate kinase {Escherichia coli | 8e-04 | |
| d1m8pa3 | 183 | c.37.1.15 (A:391-573) ATP sulfurylase C-terminal d | 0.001 | |
| d1rz3a_ | 198 | c.37.1.6 (A:) Hypothetical protein rbstp0775 {Baci | 0.001 | |
| d1f5na2 | 277 | c.37.1.8 (A:7-283) Interferon-induced guanylate-bi | 0.001 | |
| d1nrjb_ | 209 | c.37.1.8 (B:) Signal recognition particle receptor | 0.002 | |
| d1x6va3 | 195 | c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kin | 0.003 | |
| d1xjca_ | 165 | c.37.1.10 (A:) Molybdopterin-guanine dinucleotide | 0.004 | |
| d1kaga_ | 169 | c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia | 0.004 | |
| d2bdta1 | 176 | c.37.1.25 (A:1-176) Hypothetical protein BH3686 {B | 0.004 | |
| d2qm8a1 | 323 | c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylo | 0.004 |
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 150 bits (381), Expect = 9e-43
Identities = 65/224 (29%), Positives = 111/224 (49%), Gaps = 17/224 (7%)
Query: 165 TSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS 224
E L + ++ GE +++MGPSGSGK+T+LN++ L +PT G + ++ +
Sbjct: 13 MGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGC-LDKPT-EGEVYIDNIKTN 70
Query: 225 --------KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVIN 276
K + KIGFV Q L P LT E + + + ++ +++ KRA++ +
Sbjct: 71 DLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLK 130
Query: 277 ELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQ 336
LE +SGG+++RV I + NP ++ D+PT LDS T +I+Q
Sbjct: 131 MAELEE----RFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQ 186
Query: 337 MLQDIA-EAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379
+L+ + E GKTVV H + + +++I L G + K
Sbjct: 187 LLKKLNEEDGKTVVVVTHDIN--VARFGERIIYLKDGEVEREEK 228
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 149 bits (377), Expect = 4e-42
Identities = 58/217 (26%), Positives = 102/217 (47%), Gaps = 14/217 (6%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS--KS 226
+N + ++ GE L L+GPSG GKTT L +++G L EPT G I + D +
Sbjct: 18 NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAG-LEEPT-EGRIYFGDRDVTYLPP 75
Query: 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDT 286
I V Q ++PH+TV E + + ++ K + +KR L +E +
Sbjct: 76 KDRNISMVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEELLN- 131
Query: 287 MIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA-EAG 345
+ +SGG+R+RV + I++ P +L +DEP S LD+ + + ++ + +
Sbjct: 132 ----RYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLK 187
Query: 346 KTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382
T + H D++ ++ +G LL G +E
Sbjct: 188 VTTIYVTHDQVE-AMTMGDRIAVMNRGQLLQIGSPTE 223
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 145 bits (368), Expect = 2e-40
Identities = 53/216 (24%), Positives = 95/216 (43%), Gaps = 18/216 (8%)
Query: 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKS 229
+L I ++ GE+LA+ G +GSGKT+LL L+ G +E + G I ++
Sbjct: 49 NPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILG-ELEAS-EGIIKHSG--------- 97
Query: 230 KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIG 289
++ F +Q + P T+KE + + + K + +T++G
Sbjct: 98 RVSFCSQFSWIMPG-TIKENIIFGVSYD---EYRYKSVVKACQLQQDITKFAEQDNTVLG 153
Query: 290 GSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVV 349
V +SGG+R R+ + + + L LD P LD T ++ + A KT +
Sbjct: 154 EGGVT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRI 212
Query: 350 TTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385
+ K DK+++L +GS ++G SE +
Sbjct: 213 LVTSKMEH--LRKADKILILHQGSSYFYGTFSELQS 246
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 144 bits (365), Expect = 3e-40
Identities = 60/231 (25%), Positives = 112/231 (48%), Gaps = 26/231 (11%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---- 224
++L G++ G+V++++G SGSGK+T L ++ +E G+I N +
Sbjct: 14 GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINF--LEKPSEGAIIVNGQNINLVRD 71
Query: 225 -------------KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRA 271
+ L++++ V Q L+ H+TV E + A + L L+K +RA
Sbjct: 72 KDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLG--LSKHDARERA 129
Query: 272 IDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTA 331
+ + ++G++ G + +SGG+++RV I + + P +L DEPTS LD
Sbjct: 130 LKYLAKVGIDERAQ----GKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELV 185
Query: 332 LRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382
+++++Q +AE GKT+V H+ H +I L +G + G +
Sbjct: 186 GEVLRIMQQLAEEGKTMVVVTHEMGF-ARHVSSHVIFLHQGKIEEEGDPEQ 235
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 141 bits (356), Expect = 6e-39
Identities = 70/242 (28%), Positives = 115/242 (47%), Gaps = 23/242 (9%)
Query: 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME 209
+ V+++ + E IL I S+ GE +A +G SG GK+TL+NL+ R +
Sbjct: 17 IDIDHVSFQY------NDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIP-RFYD 69
Query: 210 PTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQ 265
T G I + H SL+++IG V Q D + TVKE + + +
Sbjct: 70 VT-SGQILIDGHNIKDFLTGSLRNQIGLV-QQDNILFSDTVKENILLGRPTATDEEVVEA 127
Query: 266 QKEKRAIDVINEL--GLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPT 323
K A D I L G DT +G V+ +SGG+++R+ I + NP +L LDE T
Sbjct: 128 AKMANAHDFIMNLPQGY----DTEVGERGVK-LSGGQKQRLSIARIFLNNPPILILDEAT 182
Query: 324 SGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383
S LD + I + L +++ +T + H+ S+ DK++++ G ++ G E
Sbjct: 183 SALDLESESIIQEALDVLSK-DRTTLIVAHRLST--ITHADKIVVIENGHIVETGTHREL 239
Query: 384 MA 385
+A
Sbjct: 240 IA 241
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 140 bits (355), Expect = 6e-39
Identities = 66/242 (27%), Positives = 120/242 (49%), Gaps = 19/242 (7%)
Query: 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME 209
++F DV++ + + +L G+T ++ PGEV AL+GP+GSGK+T+ LL L +
Sbjct: 12 VQFQDVSFA-----YPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALL-QNLYQ 65
Query: 210 PTVGGSITYNDHPYS----KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLR-LPNTLTK 264
PT GG + + P + L ++ V Q+ +F +++E + Y + +T
Sbjct: 66 PT-GGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGR-SLQENIAYGLTQKPTMEEITA 123
Query: 265 QQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTS 324
+ A I+ GL + DT + +SGG+R+ V + +I P +L LD+ TS
Sbjct: 124 AAVKSGAHSFIS--GLPQGYDTEV-DEAGSQLSGGQRQAVALARALIRKPCVLILDDATS 180
Query: 325 GLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383
LD+ + L++ Q+L + E ++V+ S L + D ++ L G++ G +
Sbjct: 181 ALDANSQLQVEQLLYESPERYSRSVLLITQHLS--LVEQADHILFLEGGAIREGGTHQQL 238
Query: 384 MA 385
M
Sbjct: 239 ME 240
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 136 bits (344), Expect = 6e-38
Identities = 44/194 (22%), Positives = 97/194 (50%), Gaps = 15/194 (7%)
Query: 161 LKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYND 220
++ ++ +K +L IT ++ G V+ GP+G GKTTLL +S ++P G I YN
Sbjct: 5 IRDLSVGYDKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTIST-YLKPL-KGEIIYNG 62
Query: 221 HPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL 280
P +K +K KI F+ ++ ++ ++V++ L A L + + +D + + +
Sbjct: 63 VPITK-VKGKIFFLPEEIIVPRKISVEDYLKAVASLY-----GVKVNKNEIMDALESVEV 116
Query: 281 ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQD 340
+ + +S G +RV + + +++N + LD+P +D + ++++ + +
Sbjct: 117 LDLKK------KLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILE 170
Query: 341 I-AEAGKTVVTTIH 353
I E G ++++
Sbjct: 171 ILKEKGIVIISSRE 184
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 136 bits (344), Expect = 2e-37
Identities = 62/242 (25%), Positives = 113/242 (46%), Gaps = 22/242 (9%)
Query: 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME 209
L+F +VT+ E L I + G+ +AL+G SGSGK+T+ +L++
Sbjct: 14 LEFRNVTFT------YPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITR--FY 65
Query: 210 PTVGGSITYNDHPYS----KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQ 265
G I + H SL++++ V+Q+ LF + +
Sbjct: 66 DIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEA 125
Query: 266 QKEKRAIDVINEL--GLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPT 323
+ A+D IN++ GL DT+IG +SGG+R+R+ I ++ + +L LDE T
Sbjct: 126 ARMAYAMDFINKMDNGL----DTIIG-ENGVLLSGGQRQRIAIARALLRDSPILILDEAT 180
Query: 324 SGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383
S LD+ + I L ++ + +T + H+ S + D+++++ G ++ G SE
Sbjct: 181 SALDTESERAIQAALDELQK-NRTSLVIAHRLS--TIEQADEIVVVEDGIIVERGTHSEL 237
Query: 384 MA 385
+A
Sbjct: 238 LA 239
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 135 bits (342), Expect = 3e-37
Identities = 66/239 (27%), Positives = 116/239 (48%), Gaps = 19/239 (7%)
Query: 151 KFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP 210
F ++ ++ + IL+ I S+ GEV+ ++G SGSGK+TL L+ R P
Sbjct: 3 TFRNIRFR------YKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQ-RFYIP 55
Query: 211 TVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQ 266
G + + H + L+ ++G V QD+VL ++ + ++ A +
Sbjct: 56 E-NGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNR-SIIDNISLANPGMSVEKVIYAA 113
Query: 267 KEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGL 326
K A D I+EL G+ G+SGG+R+R+ I ++ NP +L DE TS L
Sbjct: 114 KLAGAHDFISELREGYNTIVGEQGA---GLSGGQRQRIAIARALVNNPKILIFDEATSAL 170
Query: 327 DSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385
D + I++ + I + G+TV+ H+ S D++I++ KG ++ GK E ++
Sbjct: 171 DYESEHVIMRNMHKICK-GRTVIIIAHRLS--TVKNADRIIVMEKGKIVEQGKHKELLS 226
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 136 bits (343), Expect = 3e-37
Identities = 53/229 (23%), Positives = 104/229 (45%), Gaps = 23/229 (10%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS-----KS 226
L+G++ SVN G+V ++GP+GSGK+TL+N+++G ++ G + + + + +
Sbjct: 19 ALDGVSISVNKGDVTLIIGPNGSGKSTLINVITG-FLKAD-EGRVYFENKDITNKEPAEL 76
Query: 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLT----------KQQKEKRAIDVIN 276
I Q +TV E L + + L +++ ++A ++
Sbjct: 77 YHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILE 136
Query: 277 ELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQ 336
L L D G +SGG+ K V IG ++ NP ++ +DEP +G+ A I
Sbjct: 137 FLKLSHLYDRKAGE-----LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFN 191
Query: 337 MLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385
+ ++ G T + H+ + + D L ++ G ++ G+ E +
Sbjct: 192 HVLELKAKGITFLIIEHRLDI-VLNYIDHLYVMFNGQIIAEGRGEEEIK 239
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 135 bits (341), Expect = 4e-37
Identities = 66/240 (27%), Positives = 111/240 (46%), Gaps = 19/240 (7%)
Query: 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME 209
L V + + + IL I+ P ++A GPSG GK+T+ +LL +
Sbjct: 2 LSARHVDFAY-------DDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLER-FYQ 53
Query: 210 PTVGGSITYNDHPYS----KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQ 265
PT G IT + P ++ +S+IGFV+QD + T++E LTY + Q
Sbjct: 54 PT-AGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAG-TIRENLTYGLEGDYTDEDLWQ 111
Query: 266 QKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSG 325
+ E ++ + G +SGG+R+R+ I + NP +L LDE T+
Sbjct: 112 VLDLAFARSFVENMPDQLNTEV--GERGVKISGGQRQRLAIARAFLRNPKILMLDEATAS 169
Query: 326 LDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385
LDS + + + L + + G+T + H+ S+ DK+ + KG + GK +E +A
Sbjct: 170 LDSESESMVQKALDSLMK-GRTTLVIAHRLST--IVDADKIYFIEKGQITGSGKHNELVA 226
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 131 bits (330), Expect = 1e-35
Identities = 54/224 (24%), Positives = 105/224 (46%), Gaps = 14/224 (6%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPY---SK 225
+K+IL GI+ + GE+ L+GP+G+GKTT L ++S L++P+ G +T
Sbjct: 14 KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIIST-LIKPS-SGIVTVFGKNVVEEPH 71
Query: 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQD 285
++ I ++ ++ + ++ E L + A + + E+ GL
Sbjct: 72 EVRKLISYLPEEAGAYRNMQGIEYLRFVAGFY---ASSSSEIEEMVERATEIAGLGEKIK 128
Query: 286 TMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAG 345
V S G +++ I +++NP L LDEPTSGLD A + ++L+ ++ G
Sbjct: 129 DR-----VSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEG 183
Query: 346 KTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSS 389
T++ + H + D++ L+ G+++ G E + +
Sbjct: 184 LTILVSSHNMLE-VEFLCDRIALIHNGTIVETGTVEELKERYKA 226
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 131 bits (330), Expect = 2e-35
Identities = 57/226 (25%), Positives = 103/226 (45%), Gaps = 19/226 (8%)
Query: 165 TSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS 224
+ LN ++ V G++ ++G SG+GK+TL+ ++ L PT GS+ + +
Sbjct: 13 QGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNL-LERPT-EGSVLVDGQELT 70
Query: 225 K-------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINE 277
+ +IG + Q L TV + L K + ++R ++++
Sbjct: 71 TLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEVKRRVTELLSL 127
Query: 278 LGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQM 337
+GL D S+ +SGG+++RV I + NP +L DE TS LD T I+++
Sbjct: 128 VGLGDKHD-----SYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILEL 182
Query: 338 LQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382
L+DI G T++ H+ + D + ++ G L+ SE
Sbjct: 183 LKDINRRLGLTILLITHEMDV-VKRICDCVAVISNGELIEQDTVSE 227
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 126 bits (318), Expect = 8e-34
Identities = 55/220 (25%), Positives = 95/220 (43%), Gaps = 18/220 (8%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYN-----DHPY 223
+ GI V G+++ L+G +G+GKTT L+ ++G + G I +N + P
Sbjct: 18 AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAG--LVRAQKGKIIFNGQDITNKPA 75
Query: 224 SKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINEL-GLER 282
+ I V + +FP LTV E L A R K+ ++ + + L+
Sbjct: 76 HVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKD----KEGIKRDLEWIFSLFPRLKE 131
Query: 283 CQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA 342
+SGGE++ + IG ++ P LL +DEP+ GL + +++Q I
Sbjct: 132 RLKQ-----LGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKIN 186
Query: 343 EAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382
+ G T++ +L G ++ GKASE
Sbjct: 187 QEGTTILLVEQNALG-ALKVAHYGYVLETGQIVLEGKASE 225
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 122 bits (308), Expect = 2e-32
Identities = 58/228 (25%), Positives = 93/228 (40%), Gaps = 28/228 (12%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---- 224
E L ++G V GE+L L+GP+G+GK+TLL ++G M GSI + P
Sbjct: 11 ESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAG--MTSG-KGSIQFAGQPLEAWSA 67
Query: 225 KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQ 284
L +++Q V LT + + + DV L L+
Sbjct: 68 TKLALHRAYLSQQQTPPFATPVWHYLTLHQ--------HDKTRTELLNDVAGALALDD-- 117
Query: 285 DTMIGGSFVRGVSGGERKRVCIGNEII-------INPSLLFLDEPTSGLDSTTALRIVQM 337
G +SGGE +RV + ++ LL LDEP + LD + ++
Sbjct: 118 ---KLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKI 174
Query: 338 LQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385
L + + G +V + H + L H + LL G +L G+ E +
Sbjct: 175 LSALCQQGLAIVMSSHDLNHTLRH-AHRAWLLKGGKMLASGRREEVLT 221
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 118 bits (298), Expect = 4e-31
Identities = 64/223 (28%), Positives = 104/223 (46%), Gaps = 20/223 (8%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228
E + ++ V GE + L+GPSG GKTT L +++G L EP+ G I D + K
Sbjct: 15 EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAG-LEEPS-RGQIYIGDKLVADPEK 72
Query: 229 SK--------IGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL 280
I V Q L+PH+TV + + + LR + +Q+ ++R +V LGL
Sbjct: 73 GIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLR---KVPRQEIDQRVREVAELLGL 129
Query: 281 ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQD 340
+ R +SGG+R+RV +G I+ P + +DEP S LD+ +R+ L+
Sbjct: 130 TELLNRK-----PRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKK 184
Query: 341 IAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382
+ G T + H D++ ++ +G L G E
Sbjct: 185 LQRQLGVTTIYVTHDQVE-AMTMGDRIAVMNRGVLQQVGSPDE 226
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 118 bits (296), Expect = 7e-31
Identities = 59/217 (27%), Positives = 101/217 (46%), Gaps = 14/217 (6%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS--KS 226
E + I ++ GE + +GPSG GK+TLL +++G +E G + + +
Sbjct: 12 EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAG--LETITSGDLFIGEKRMNDTPP 69
Query: 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDT 286
+ +G V Q L+PHL+V E +++ L K+ +R V L L D
Sbjct: 70 AERGVGMVFQSYALYPHLSVAENMSFGLKLAGAK---KEVINQRVNQVAEVLQLAHLLD- 125
Query: 287 MIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA-EAG 345
+ +SGG+R+RV IG ++ PS+ LDEP S LD+ +++ + + G
Sbjct: 126 ----RKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLG 181
Query: 346 KTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382
+T++ H DK+++L G + GK E
Sbjct: 182 RTMIYVTHDQVE-AMTLADKIVVLDAGRVAQVGKPLE 217
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 115 bits (290), Expect = 4e-30
Identities = 62/225 (27%), Positives = 104/225 (46%), Gaps = 17/225 (7%)
Query: 161 LKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYND 220
++ ++ + L+ ++ V GE ++GP+G+GKT L L++G G I +
Sbjct: 4 IESLSRKWKNFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAG--FHVPDSGRILLDG 61
Query: 221 HPYSK--SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINEL 278
+ K I FV Q+ LFPH+ VK+ L + + K + KR +D +L
Sbjct: 62 KDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGM------RMKKIKDPKRVLDTARDL 115
Query: 279 GLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQML 338
+E D +SGGE++RV + ++ NP +L LDEP S LD T +ML
Sbjct: 116 KIEHLLD-----RNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREML 170
Query: 339 QDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382
+ + TV+ H + D++ ++ G L+ GK E
Sbjct: 171 SVLHKKNKLTVLHITHDQTE-ARIMADRIAVVMDGKLIQVGKPEE 214
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 112 bits (281), Expect = 8e-29
Identities = 61/235 (25%), Positives = 114/235 (48%), Gaps = 20/235 (8%)
Query: 158 KVILKGMT---SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGG 214
++I+K ++ + L+ + ++ GE ++GPSG+GKTT + +++G L P+ G
Sbjct: 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAG-LDVPSTGE 61
Query: 215 ------SITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKE 268
+ N KIG V Q L+P+LT E + + ++K++
Sbjct: 62 LYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM---KMSKEEIR 118
Query: 269 KRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDS 328
KR +V L + + R +SG +++RV + ++ +PSLL LDEP S LD+
Sbjct: 119 KRVEEVAKILDIHHVLNHFP-----RELSGAQQQRVALARALVKDPSLLLLDEPFSNLDA 173
Query: 329 TTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382
+++++ G T++ H P+ +F D++ +L KG L+ GK +
Sbjct: 174 RMRDSARALVKEVQSRLGVTLLVVSHDPAD-IFAIADRVGVLVKGKLVQVGKPED 227
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 102 bits (255), Expect = 2e-25
Identities = 52/204 (25%), Positives = 96/204 (47%), Gaps = 16/204 (7%)
Query: 182 PGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS--KSLKSKIGFVTQDDV 239
+ L+GP+G+GK+ L L++G +++P G + N + + IGFV QD
Sbjct: 23 GRDYCVLLGPTGAGKSVFLELIAG-IVKPD-RGEVRLNGADITPLPPERRGIGFVPQDYA 80
Query: 240 LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299
LFPHL+V + Y + + ++++R ++ E+ + +SGG
Sbjct: 81 LFPHLSVYRNIAYG-----LRNVERVERDRRVREM-----AEKLGIAHLLDRKPARLSGG 130
Query: 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSR 358
ER+RV + ++I P LL LDEP S +D T +++ L+ + ++ H
Sbjct: 131 ERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIE- 189
Query: 359 LFHKFDKLILLGKGSLLYFGKASE 382
D++ ++ G ++ GK E
Sbjct: 190 AAMLADEVAVMLNGRIVEKGKLKE 213
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 58.5 bits (140), Expect = 1e-10
Identities = 19/194 (9%), Positives = 45/194 (23%), Gaps = 34/194 (17%)
Query: 186 LALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLT 245
+ + G G GKTTL+ + + G ++V P
Sbjct: 3 IIITGEPGVGKTTLVKKIVE-RLGKRAIG-------------------FWTEEVRDPETK 42
Query: 246 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC 305
+ + + + + + ++ +
Sbjct: 43 KRTGFRIITTEGKKKIFSSKFFTSKKLVGSYGVNVQYFE-----------ELAIPILERA 91
Query: 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDK 365
++ +DE + + Q + + VV TI +
Sbjct: 92 YREAKKDRRKVIIIDEIGKMELFSKK-FRDLVRQIMHDPNVNVVATIPIRDVHPL--VKE 148
Query: 366 LILLGKGSLLYFGK 379
+ L L+
Sbjct: 149 IRRLPGAVLIELTP 162
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 182 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 43.1 bits (100), Expect = 2e-05
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 183 GEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP 222
G V+ L GPS GK+T++ L R+ P + S++
Sbjct: 2 GRVVVLSGPSAVGKSTVVRCLRERI--PNLHFSVSATTRA 39
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 427 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 43.6 bits (101), Expect = 5e-05
Identities = 19/89 (21%), Positives = 31/89 (34%), Gaps = 6/89 (6%)
Query: 283 CQDTMIGGSFVRGVSGGERKRVCIGNEIII---NPS-LLFLDEPTSGLDSTTALRIVQML 338
+ + +SGGE+ + I PS LDE + LD T RI +
Sbjct: 320 ATPPLKRFKDMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYI 379
Query: 339 QDIAEAGKTVVTTIHQPSSRLFHKFDKLI 367
+ + + +F K D L+
Sbjct: 380 RRHRNPDLQFIVISLKN--TMFEKSDALV 406
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Score = 41.2 bits (95), Expect = 9e-05
Identities = 15/93 (16%), Positives = 30/93 (32%)
Query: 183 GEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFP 242
++ L G S +GK+ ++ L L EP + + ++S G + D
Sbjct: 3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLKMQSAEGGIEFDADGGV 62
Query: 243 HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVI 275
+ + A + + DV
Sbjct: 63 SIGPEFRALEGAWAEGVVAMARAGARIIIDDVF 95
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} Length = 176 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Score = 40.7 bits (94), Expect = 1e-04
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 183 GEVLALMGPSGSGKTTLLNLLSGRLMEPTV 212
G +L L G GSGK+T+ L+ P V
Sbjct: 4 GNILLLSGHPGSGKSTIAEALANLPGVPKV 33
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} Length = 189 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.0 bits (92), Expect = 2e-04
Identities = 25/173 (14%), Positives = 54/173 (31%), Gaps = 7/173 (4%)
Query: 185 VLALMGPSGSGKTTLLNLLSGRLME--PTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFP 242
+ L GP G GKTTL++ S L V G T + + + ++
Sbjct: 3 HVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPLS 62
Query: 243 HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL--ERCQDTMIGGSFVRGVSGGE 300
+ ++ + E+ A+ V+ Q + + +
Sbjct: 63 RVGLEPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCV-IDEIGKMELFS 121
Query: 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIH 353
+ + + + P + L AL V+ +++ + VT +
Sbjct: 122 QLFIQAVRQTLSTPGTIILGTIPVPKGKPLAL--VEEIRNRKDVKVFNVTKEN 172
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} Length = 205 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Score = 39.4 bits (91), Expect = 4e-04
Identities = 9/40 (22%), Positives = 18/40 (45%)
Query: 183 GEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP 222
G + + PSG+GK++L+ L S+++
Sbjct: 2 GTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQ 41
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Score = 38.8 bits (89), Expect = 6e-04
Identities = 13/37 (35%), Positives = 18/37 (48%)
Query: 185 VLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDH 221
+LA SG+GKTTLL L L + + + H
Sbjct: 4 LLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTH 40
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Score = 38.5 bits (88), Expect = 8e-04
Identities = 10/40 (25%), Positives = 20/40 (50%)
Query: 181 NPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYND 220
+ + LMG SGSGK+ + + ++ +L + G +
Sbjct: 4 HDHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPR 43
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} Length = 183 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Score = 38.2 bits (87), Expect = 0.001
Identities = 8/27 (29%), Positives = 11/27 (40%)
Query: 183 GEVLALMGPSGSGKTTLLNLLSGRLME 209
G + L G SGK + L L +
Sbjct: 6 GFTIFLTGYMNSGKDAIARALQVTLNQ 32
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} Length = 198 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Score = 38.6 bits (88), Expect = 0.001
Identities = 16/39 (41%), Positives = 20/39 (51%)
Query: 185 VLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPY 223
VL + G S SGKTTL N LS L E + + + D
Sbjct: 24 VLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHI 62
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 277 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.5 bits (89), Expect = 0.001
Identities = 18/74 (24%), Positives = 35/74 (47%), Gaps = 6/74 (8%)
Query: 165 TSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSI---TYNDH 221
+ E IL+ IT + V+A++G +GK+ L+N L+G+ ++G ++ T
Sbjct: 17 ANPEALKILSAITQPMV---VVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIW 73
Query: 222 PYSKSLKSKIGFVT 235
+ K G +
Sbjct: 74 MWCVPHPKKPGHIL 87
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 209 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 37.7 bits (86), Expect = 0.002
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 5/44 (11%)
Query: 185 VLALMGPSGSGKTTLLNLLSGRLMEPTVG-----GSITYNDHPY 223
+ + GP SGKT+LL LL+ + PTV + Y+
Sbjct: 5 SIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADYDGSGV 48
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} Length = 195 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.0 bits (84), Expect = 0.003
Identities = 12/43 (27%), Positives = 18/43 (41%)
Query: 183 GEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK 225
G + L G SG+GKTT+ L L+ + D+
Sbjct: 19 GCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQG 61
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} Length = 165 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Score = 36.4 bits (83), Expect = 0.004
Identities = 8/37 (21%), Positives = 13/37 (35%)
Query: 185 VLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDH 221
V ++G SGKTTL+ + +
Sbjct: 3 VWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHG 39
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} Length = 169 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Score = 36.3 bits (82), Expect = 0.004
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 186 LALMGPSGSGKTTLLNLLSGRLMEPTV 212
+ L+GP G+GK+T+ L+ +L
Sbjct: 5 IFLVGPMGAGKSTIGRQLAQQLNMEFY 31
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} Length = 176 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Score = 36.2 bits (82), Expect = 0.004
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 185 VLALMGPSGSGKTTLLNLLSGRL 207
+ + GP+G GK+T L+ +L
Sbjct: 4 LYIITGPAGVGKSTTCKRLAAQL 26
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} Length = 323 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Score = 37.2 bits (85), Expect = 0.004
Identities = 9/52 (17%), Positives = 21/52 (40%)
Query: 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDH 221
+D+++ + + + G G GK+T ++ L L ++ D
Sbjct: 38 RDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDP 89
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 562 | |||
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.86 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.67 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.59 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 99.12 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.87 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 98.81 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 97.94 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 97.87 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 97.55 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 97.46 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 97.2 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 97.17 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 97.09 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.08 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 97.07 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 96.99 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 96.93 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 96.86 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 96.86 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 96.81 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 96.74 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 96.71 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 96.68 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 96.61 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 96.6 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.59 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 96.55 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 96.54 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 96.53 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 96.51 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 96.49 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 96.44 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 96.39 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 96.36 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 96.29 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 96.28 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 96.21 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 96.21 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 96.14 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 96.13 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 96.08 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 96.02 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 96.02 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 96.02 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 96.01 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 96.0 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 96.0 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 95.94 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 95.91 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 95.89 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 95.88 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 95.87 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 95.84 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 95.83 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 95.82 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 95.82 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 95.81 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 95.8 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 95.78 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 95.78 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 95.77 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 95.77 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 95.74 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 95.7 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 95.7 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 95.66 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 95.66 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 95.62 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 95.59 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 95.55 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 95.54 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 95.45 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 95.37 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 95.37 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 95.34 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 95.31 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 95.18 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 95.12 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 95.1 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 95.07 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 95.07 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 95.04 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 94.99 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 94.93 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 94.89 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 94.86 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 94.86 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 94.77 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 94.72 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 94.69 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 94.69 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 94.68 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 94.63 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 94.58 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 94.57 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 94.53 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 94.48 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 94.43 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 94.43 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 94.37 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 94.34 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 94.25 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 94.23 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 94.23 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 94.19 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 94.14 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 94.1 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 94.09 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 94.06 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 94.04 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 93.95 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 93.93 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 93.91 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 93.86 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 93.86 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 93.77 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 93.7 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 93.7 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 93.69 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 93.68 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 93.64 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 93.64 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 93.62 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 93.6 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 93.59 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 93.59 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 93.55 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 93.54 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 93.54 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 93.52 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 93.45 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 93.44 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 93.42 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 93.38 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 93.36 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 93.33 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 93.32 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 93.26 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 93.23 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 93.17 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 93.16 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 93.16 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 93.12 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 93.11 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 93.09 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 92.99 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 92.98 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 92.96 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 92.88 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 92.82 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 92.79 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 92.73 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 92.72 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 92.71 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 92.69 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 92.65 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 92.63 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 92.46 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 92.45 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 92.37 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 92.35 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 92.33 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 92.3 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 92.29 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 92.27 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 92.2 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 92.12 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 92.08 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 92.03 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 91.95 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 91.87 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 91.86 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 91.44 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 91.37 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 91.33 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 91.33 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 91.32 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 91.2 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 91.14 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 91.1 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 90.98 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 90.9 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 90.78 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 90.72 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 90.68 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 90.54 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 90.51 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 90.1 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 89.84 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 89.7 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 89.62 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 89.48 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 89.15 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 89.09 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 88.72 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 88.08 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 88.01 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 87.94 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 87.8 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 87.78 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 87.77 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 87.39 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 86.65 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 86.5 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 86.49 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 86.36 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 86.32 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 86.06 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 85.9 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 85.83 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 85.31 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 85.06 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 83.88 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 83.36 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 83.2 | |
| d2olra1 | 313 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 80.08 |
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=4.9e-57 Score=446.24 Aligned_cols=217 Identities=26% Similarity=0.475 Sum_probs=190.6
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh--h
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--S 226 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--~ 226 (562)
.|+++||+++| +++.+|+||||+|++||+++|+||||||||||+++|+|.+. +++|+|.+||+++.. .
T Consensus 6 ~I~v~nlsk~y--------g~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~--p~sG~I~i~g~~i~~~~~ 75 (239)
T d1v43a3 6 EVKLENLTKRF--------GNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE--PTEGRIYFGDRDVTYLPP 75 (239)
T ss_dssp CEEEEEEEEEE--------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTSCG
T ss_pred eEEEEEEEEEE--------CCEEEEcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCC--CCCCEEEEcceecccCCc
Confidence 48999999999 36789999999999999999999999999999999999643 568999999999863 4
Q ss_pred ccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHH
Q 008534 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (562)
Q Consensus 227 ~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~I 306 (562)
.+++||||||++.+||++||+||+.|+...+ ..++++.++++.++++.++|++..+. ++.+|||||||||+|
T Consensus 76 ~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LSGGq~QRvai 147 (239)
T d1v43a3 76 KDRNISMVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEELLNR-----YPAQLSGGQRQRVAV 147 (239)
T ss_dssp GGGTEEEEEC------CCCHHHHHHTTCC-----CCCHHHHHHHHHHHHHHTTCGGGTTS-----CTTTCCSSCHHHHHH
T ss_pred ccceEEEEeechhhcccchHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhcC-----ChhhCCHHHHHHHHH
Confidence 5678999999999999999999999987554 46788888899999999999877665 467999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHH
Q 008534 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (562)
Q Consensus 307 AraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~ 384 (562)
||||+.+|+||||||||+||||.++.++++.|+++.++ |+|||++||++. ++.++||||++|++|+|++.|+++++.
T Consensus 148 AraL~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~-~a~~~~dri~vm~~G~iv~~G~~~el~ 225 (239)
T d1v43a3 148 ARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQV-EAMTMGDRIAVMNRGQLLQIGSPTEVY 225 (239)
T ss_dssp HHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HhhhccCCCceeecCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999999999999999755 999999999976 578899999999999999999999985
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=2.3e-56 Score=442.03 Aligned_cols=217 Identities=29% Similarity=0.484 Sum_probs=196.8
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
.|+++||+++| +++.+|+||||+|++||+++|+||||||||||+++|+|... +++|+|.++|+++..
T Consensus 3 ~i~v~nl~k~y--------g~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~--p~sG~I~~~g~~i~~~~~ 72 (240)
T d1g2912 3 GVRLVDVWKVF--------GEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEE--PSRGQIYIGDKLVADPEK 72 (240)
T ss_dssp EEEEEEEEEEE--------TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC--CSEEEEEETTEEEEEGGG
T ss_pred cEEEEeEEEEE--------CCEEEEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCC--CCCCEEEECCEEecccch
Confidence 58999999999 35789999999999999999999999999999999999543 568999999998742
Q ss_pred -----hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhH
Q 008534 226 -----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGE 300 (562)
Q Consensus 226 -----~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGq 300 (562)
..++.||||||++.+||++||+||+.|+...+ ..++++.++++.++++.++|++..+. ++++|||||
T Consensus 73 ~~~~~~~~r~ig~v~Q~~~L~~~ltV~eni~~~~~~~---~~~~~e~~~~v~~~l~~~~l~~~~~~-----~p~~LSGGq 144 (240)
T d1g2912 73 GIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLR---KVPRQEIDQRVREVAELLGLTELLNR-----KPRELSGGQ 144 (240)
T ss_dssp TEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHHTCGGGTTC-----CGGGSCHHH
T ss_pred hhhcccccccceecccchhhcchhhhhHhhhhhHHHc---CCCHHHHHHHHHHHHHHcCChhHhcC-----ChhhCCHHH
Confidence 12577999999999999999999999998765 45678888899999999999887665 467999999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecC
Q 008534 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (562)
Q Consensus 301 rqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (562)
||||+|||||+.+|+||||||||+|||+.++..+++.|+++.++ |.|||++||++. ++..+||||++|++|+|++.|+
T Consensus 145 kQRv~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~-~~~~~~drv~vm~~G~iv~~G~ 223 (240)
T d1g2912 145 RQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQV-EAMTMGDRIAVMNRGVLQQVGS 223 (240)
T ss_dssp HHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEETTEEEEEEC
T ss_pred HHHHHHHHHHhcCCCEEEecCCCcccCHHHHHHHHHHHHHHHhccCCEEEEEcCCHH-HHHHhCCEEEEEECCEEEEEcC
Confidence 99999999999999999999999999999999999999999765 999999999975 4778999999999999999999
Q ss_pred hHHHH
Q 008534 380 ASEAM 384 (562)
Q Consensus 380 ~~el~ 384 (562)
++|++
T Consensus 224 ~~el~ 228 (240)
T d1g2912 224 PDEVY 228 (240)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99986
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=4.1e-57 Score=445.27 Aligned_cols=217 Identities=28% Similarity=0.485 Sum_probs=160.6
Q ss_pred EEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh--hc
Q 008534 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SL 227 (562)
Q Consensus 150 l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--~~ 227 (562)
|+++||+++| +++.+|+||||+|++||+++|+||||||||||+++|+|... +++|+|++||+++.. ..
T Consensus 1 Iev~nv~k~y--------g~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~--p~sG~I~i~g~~i~~~~~~ 70 (232)
T d2awna2 1 VQLQNVTKAW--------GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET--ITSGDLFIGEKRMNDTPPA 70 (232)
T ss_dssp EEEEEEEEEE--------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEESSSCCTTSCGG
T ss_pred CEEEEEEEEE--------CCEEEEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCC--CCCCEEEECCEECCCCchh
Confidence 6899999999 36789999999999999999999999999999999999543 569999999999863 35
Q ss_pred cCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHH
Q 008534 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (562)
Q Consensus 228 ~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA 307 (562)
++.||||||++.+|+++||+||+.|+...+ ..++++.++++.++++.++|.+..+.. +++|||||||||+||
T Consensus 71 ~r~ig~v~Q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~l~~~~~~~-----~~~LSGGqkQRvaiA 142 (232)
T d2awna2 71 ERGVGMVFQSYALYPHLSVAENMSFGLKLA---GAKKEVINQRVNQVAEVLQLAHLLDRK-----PKALSGGQRQRVAIG 142 (232)
T ss_dssp GTCEEEECSSCCC------------------------CHHHHHHHHHHHHC--------------------------CHH
T ss_pred hceeeeeccccccccchhHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhCCChhhhhCC-----hhhCCHHHHHHHHHH
Confidence 678999999999999999999999987654 345667778899999999999877764 578999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHHH
Q 008534 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (562)
Q Consensus 308 raLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~~ 385 (562)
|||+.+|+||||||||+|||+.++.++++.|+++.+ .|+|||++||++. ++..+||||++|++|+|++.|+++++++
T Consensus 143 raL~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~-~a~~~~dri~vm~~G~iv~~G~~~el~~ 220 (232)
T d2awna2 143 RTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDAGRVAQVGKPLELYH 220 (232)
T ss_dssp HHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHH-HHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEeCHHHHHh
Confidence 999999999999999999999999999999999965 5999999999975 5788999999999999999999999864
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=1.5e-56 Score=443.27 Aligned_cols=220 Identities=27% Similarity=0.475 Sum_probs=196.8
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
.|+++||+++|. .+...+|+||||+|++||+++|+||||||||||+++|+|... +++|+|.++|+++..
T Consensus 3 ~i~v~nlsk~y~------~g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~--p~~G~I~~~g~~i~~~~~ 74 (242)
T d1oxxk2 3 RIIVKNVSKVFK------KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDV--PSTGELYFDDRLVASNGK 74 (242)
T ss_dssp CEEEEEEEEEEG------GGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSC--CSEEEEEETTEEEEETTE
T ss_pred EEEEEeEEEEEC------CCCEEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcC--CCCceEEECCEEeecCch
Confidence 489999999992 235679999999999999999999999999999999999543 568999999998742
Q ss_pred ----hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHH
Q 008534 226 ----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGER 301 (562)
Q Consensus 226 ----~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqr 301 (562)
..|++||||||++.+||++||+|||.|+...+ ..++++.++++.++++.+||.+..+. ++++||||||
T Consensus 75 ~~~~~~rr~ig~vfQ~~~L~p~ltv~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~~-----~p~~LSGGqk 146 (242)
T d1oxxk2 75 LIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM---KMSKEEIRKRVEEVAKILDIHHVLNH-----FPRELSGAQQ 146 (242)
T ss_dssp ESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTS---SCCHHHHHHHHHHHHHHTTCGGGTTS-----CGGGSCHHHH
T ss_pred hhcchhhccceEEeccccccccccHHHHhhhhhHhh---cCCHHHHHHHHHHHHhhcChHhhhhC-----ChhhCCHHHH
Confidence 24678999999999999999999999987543 46778888899999999999877665 4679999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecCh
Q 008534 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 380 (562)
Q Consensus 302 qRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~ 380 (562)
|||+|||||+.+|+||||||||+|||+.++.++++.|+++.++ |.|||++||++. ++.++||||++|++|+|++.|++
T Consensus 147 QRvaiARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~-~~~~~~dri~vm~~G~iv~~g~~ 225 (242)
T d1oxxk2 147 QRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPA-DIFAIADRVGVLVKGKLVQVGKP 225 (242)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEEEEEETTEEEEEECH
T ss_pred hHHHHHhHHhhcccceeecCCccCCCHHHHHHHHHHHHHHHhccCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEEcCH
Confidence 9999999999999999999999999999999999999999654 999999999975 47789999999999999999999
Q ss_pred HHHHH
Q 008534 381 SEAMA 385 (562)
Q Consensus 381 ~el~~ 385 (562)
+++..
T Consensus 226 ~el~~ 230 (242)
T d1oxxk2 226 EDLYD 230 (242)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 99853
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.5e-56 Score=441.67 Aligned_cols=221 Identities=25% Similarity=0.410 Sum_probs=195.4
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
+|+++||+++|..+ .....+|+||||+|++||+++|+||||||||||+++|+|... +++|+|.++|+++..
T Consensus 1 mi~v~nlsk~y~~~----~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~--p~sG~I~~~g~~i~~~~~ 74 (240)
T d3dhwc1 1 MIKLSNITKVFHQG----TRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER--PTEGSVLVDGQELTTLSE 74 (240)
T ss_dssp CEEEEEEEEEEECS----SCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSC--CSEEEEEETTEEECTTCH
T ss_pred CEEEEeEEEEeCCC----CeeEEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCcc--ccCCceEEcCeEeeeCCh
Confidence 48999999999421 123368999999999999999999999999999999999543 568999999999842
Q ss_pred ----hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHH
Q 008534 226 ----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGER 301 (562)
Q Consensus 226 ----~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqr 301 (562)
.+|++||||||++.+|+.+||+||+.|+...+ ..++++.++++.++++.+||++..+. ++++||||||
T Consensus 75 ~~~~~~rr~ig~VfQ~~~l~~~~tv~eni~~~l~~~---~~~~~~~~~~v~~~L~~vgL~~~~~~-----~~~~LSGG~~ 146 (240)
T d3dhwc1 75 SELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEVKRRVTELLSLVGLGDKHDS-----YPSNLSGGQK 146 (240)
T ss_dssp HHHHHHHHHEEECCSSCCCCTTSBHHHHHHHHHHTT---TCCTTHHHHHHHHHHHHHSTTTTTSS-----CBSCCCHHHH
T ss_pred hhhhhhhccccccccccccCCCccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhC-----ChhhCCHHHH
Confidence 24578999999999999999999999988654 34566777889999999999887665 4679999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecCh
Q 008534 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 380 (562)
Q Consensus 302 qRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~ 380 (562)
|||+|||||+.+|+||||||||+|||+.++.+|++.|+++.++ |+|||++||++. ++..+||||++|++|+|++.|++
T Consensus 147 QRvaiAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~-~~~~~~dri~vl~~G~iv~~G~~ 225 (240)
T d3dhwc1 147 QRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMD-VVKRICDCVAVISNGELIEQDTV 225 (240)
T ss_dssp HHHHHHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHH-HHHHHCSEEEEEETTEEEEEEET
T ss_pred HHHHHhhhhccCCCeEEeccccccCCHHHhhHHHHHHHHHHhccCCEEEEEcCCHH-HHHHhCCEEEEEECCEEEEECCH
Confidence 9999999999999999999999999999999999999999765 999999999975 47789999999999999999999
Q ss_pred HHHH
Q 008534 381 SEAM 384 (562)
Q Consensus 381 ~el~ 384 (562)
++++
T Consensus 226 ~ei~ 229 (240)
T d3dhwc1 226 SEVF 229 (240)
T ss_dssp TTTT
T ss_pred HHHH
Confidence 9873
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=3.3e-56 Score=437.63 Aligned_cols=213 Identities=29% Similarity=0.487 Sum_probs=189.9
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh--h
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--S 226 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--~ 226 (562)
+|+++||+++| +..+|+||||+|++||+++|+||||||||||+++|+|... +++|+|+++|+++.. .
T Consensus 1 mi~v~nlsk~y---------~~~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~--p~sG~I~~~G~~i~~~~~ 69 (229)
T d3d31a2 1 MIEIESLSRKW---------KNFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHV--PDSGRILLDGKDVTDLSP 69 (229)
T ss_dssp CEEEEEEEEEC---------SSCEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSC--CSEEEEEETTEECTTSCH
T ss_pred CEEEEEEEEEe---------CCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcC--CCCCEEEEccEeccccch
Confidence 48999999998 2258999999999999999999999999999999999543 569999999999863 3
Q ss_pred ccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHH
Q 008534 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (562)
Q Consensus 227 ~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~I 306 (562)
.++.||||||++.+||++||+|||.|+...+.. . ..+++.++++.++|.+..|.. +.+|||||||||+|
T Consensus 70 ~~r~ig~v~Q~~~l~~~~tV~enl~~~~~~~~~---~---~~~~~~~~l~~~~l~~~~~~~-----~~~LSGG~~QRvai 138 (229)
T d3d31a2 70 EKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKI---K---DPKRVLDTARDLKIEHLLDRN-----PLTLSGGEQQRVAL 138 (229)
T ss_dssp HHHTCEEECTTCCCCTTSCHHHHHHHHHHHHCC---C---CHHHHHHHHHHTTCTTTTTSC-----GGGSCHHHHHHHHH
T ss_pred hHhcceeeccccccCccccHHHHHHHHHhhccc---c---HHHHHHHHHHHhcchhhHhCC-----hhhCCHHHhcchhh
Confidence 467899999999999999999999999876421 1 134688899999998877764 57899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHH
Q 008534 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (562)
Q Consensus 307 AraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~ 384 (562)
||||+.+|+||||||||+|||+.++.++++.|+++.+ .|.|||++||++. ++.++||||++|++|++++.|++++++
T Consensus 139 AraL~~~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~-~~~~~~drv~vm~~G~iv~~g~~~el~ 216 (229)
T d3d31a2 139 ARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQT-EARIMADRIAVVMDGKLIQVGKPEEIF 216 (229)
T ss_dssp HHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHH-HHHHHCSEEEEESSSCEEEEECHHHHH
T ss_pred hhhhhccCCceeecCCCcCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999999999999999999999999999965 4999999999975 578899999999999999999999985
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=2.9e-55 Score=431.74 Aligned_cols=219 Identities=29% Similarity=0.467 Sum_probs=190.3
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
+|+++||+++|... .....+|+||||+|++||+++|+||||||||||+++|+|... +++|+|+++|+++..
T Consensus 1 mI~i~nlsk~y~~~----~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~--p~sG~I~~~g~~i~~~~~ 74 (230)
T d1l2ta_ 1 MIKLKNVTKTYKMG----EEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK--PTEGEVYIDNIKTNDLDD 74 (230)
T ss_dssp CEEEEEEEEEEEET----TEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECTTCCH
T ss_pred CEEEEeEEEEeCCC----CeeEEEEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCCC--CCcceeEECCEEcCcCCh
Confidence 48999999999431 123458999999999999999999999999999999999543 569999999999852
Q ss_pred -h---c-cCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCcc-ccccccCcccCCCChh
Q 008534 226 -S---L-KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC-QDTMIGGSFVRGVSGG 299 (562)
Q Consensus 226 -~---~-~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~t~vg~~~~~~LSGG 299 (562)
. + +++||||||++.++|.+||+||+.++...+.....+..+..+++.++++.++|++. .+ .++.+||||
T Consensus 75 ~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~-----~~p~~LSGG 149 (230)
T d1l2ta_ 75 DELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFAN-----HKPNQLSGG 149 (230)
T ss_dssp HHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTT-----CCGGGSCHH
T ss_pred hhcchhhcceEEEEecchhhCcCccHHHHHhHHHHHhccCCCCHHHHHHHHHHHHHhhchhhhhhc-----CChhhCCHH
Confidence 1 2 35699999999999999999999999876544456677788889999999999753 44 356799999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEec
Q 008534 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (562)
Q Consensus 300 qrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G 378 (562)
|||||+|||||+.+|+||||||||+|||+.++.+|++.|+++.++ |+|||++||++. . .++||||++|++|+|++.|
T Consensus 150 qkQRvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~-~-a~~~drv~~m~~G~Iv~~g 227 (230)
T d1l2ta_ 150 QQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN-V-ARFGERIIYLKDGEVEREE 227 (230)
T ss_dssp HHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHH-H-HTTSSEEEEEETTEEEEEE
T ss_pred HHHHHHHHhhhhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHhhCCEEEEECCCHH-H-HHhCCEEEEEECCEEEEec
Confidence 999999999999999999999999999999999999999999765 999999999974 3 4799999999999999998
Q ss_pred Ch
Q 008534 379 KA 380 (562)
Q Consensus 379 ~~ 380 (562)
++
T Consensus 228 ~~ 229 (230)
T d1l2ta_ 228 KL 229 (230)
T ss_dssp EC
T ss_pred cC
Confidence 64
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=6.2e-54 Score=429.88 Aligned_cols=220 Identities=28% Similarity=0.480 Sum_probs=194.4
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
.|+++||+++| ++..||+||||+|++||+++|+||||||||||+++|+|... +++|+|+++|+++..
T Consensus 2 ~Lev~nl~k~y--------g~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~--p~~G~I~~~G~~i~~~~~ 71 (258)
T d1b0ua_ 2 KLHVIDLHKRY--------GGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK--PSEGAIIVNGQNINLVRD 71 (258)
T ss_dssp CEEEEEEEEEE--------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEECCEEEC
T ss_pred eEEEEEEEEEE--------CCEEEEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCcc--CCCCCEEECCEEeccCCc
Confidence 48999999998 35679999999999999999999999999999999999543 568999999998741
Q ss_pred --------------hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCc
Q 008534 226 --------------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGS 291 (562)
Q Consensus 226 --------------~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~ 291 (562)
..+++||||||++.+|+.+||.||+.++..... ..++.+..+++.++++.++|.+... +.
T Consensus 72 ~~~~~~~~~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~----~~ 145 (258)
T d1b0ua_ 72 KDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL--GLSKHDARERALKYLAKVGIDERAQ----GK 145 (258)
T ss_dssp TTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTT--CCCHHHHHHHHHHHHHHTTCCHHHH----TS
T ss_pred cchhcccccHhHHHHHhcceEEEEechhhccchhcchhhhhhHHHhc--CCCHHHHHHHHHHHHHHcCCchhhh----cc
Confidence 245779999999999999999999998753322 3467777888999999999976432 23
Q ss_pred ccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcC
Q 008534 292 FVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK 371 (562)
Q Consensus 292 ~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~ 371 (562)
++.+|||||||||+|||||+.+|+||||||||+|||+.++.+|++.|++++++|+|||++|||+. ++..+||||+||++
T Consensus 146 ~p~~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~-~~~~~adri~vm~~ 224 (258)
T d1b0ua_ 146 YPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSSHVIFLHQ 224 (258)
T ss_dssp CGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHH-HHHHHCSEEEEEET
T ss_pred CcccccHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHhhhhhcccCCceEEEeCCHH-HHHHhCCEEEEEEC
Confidence 46789999999999999999999999999999999999999999999999988999999999976 47789999999999
Q ss_pred CeEEEecChHHHHH
Q 008534 372 GSLLYFGKASEAMA 385 (562)
Q Consensus 372 G~iv~~G~~~el~~ 385 (562)
|+|++.|++++++.
T Consensus 225 G~iv~~g~~~ev~~ 238 (258)
T d1b0ua_ 225 GKIEEEGDPEQVFG 238 (258)
T ss_dssp TEEEEEECHHHHHH
T ss_pred CEEEEEcCHHHHHh
Confidence 99999999999853
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=1.4e-53 Score=422.78 Aligned_cols=233 Identities=24% Similarity=0.399 Sum_probs=205.9
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
.|+++||+++| ++++||+||||+|++||++||+||||||||||+++|+|.+. +++|+|.++|+++.+
T Consensus 2 aI~v~nl~k~y--------g~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~--p~~G~i~i~G~~i~~~~~ 71 (238)
T d1vpla_ 2 AVVVKDLRKRI--------GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIK--PSSGIVTVFGKNVVEEPH 71 (238)
T ss_dssp CEEEEEEEEEE--------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEETTTCHH
T ss_pred CEEEEeEEEEE--------CCEEEEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCCEEEECcEecccChH
Confidence 48899999999 46789999999999999999999999999999999999653 568999999999853
Q ss_pred hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHH
Q 008534 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC 305 (562)
Q Consensus 226 ~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ 305 (562)
..++.+|||||++.+|+++||.||+.|...++ ..+..+..+.++.+++.++|.+..+.. +++|||||||||+
T Consensus 72 ~~~~~i~~vpq~~~~~~~ltv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~lSgG~~qrv~ 143 (238)
T d1vpla_ 72 EVRKLISYLPEEAGAYRNMQGIEYLRFVAGFY---ASSSSEIEEMVERATEIAGLGEKIKDR-----VSTYSKGMVRKLL 143 (238)
T ss_dssp HHHTTEEEECTTCCCCTTSBHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHHCCGGGGGSB-----GGGCCHHHHHHHH
T ss_pred HHHhhEeEeeeccccCCCccHHHHHHHHHHhc---CCCHHHHHHHHHHHHHhCCCHHHHhhh-----hhhCCHHHHHHHH
Confidence 45788999999999999999999999987664 235666677888999999998877765 4689999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHHH
Q 008534 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (562)
Q Consensus 306 IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~~ 385 (562)
|||||+.+|+||||||||+|||+.++.++.+.|++++++|+|||++||++. ++..+||||++|++|++++.|+++++.+
T Consensus 144 iA~al~~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~-~~~~~~drv~vl~~G~iv~~g~~~el~~ 222 (238)
T d1vpla_ 144 IARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNML-EVEFLCDRIALIHNGTIVETGTVEELKE 222 (238)
T ss_dssp HHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHH-HHTTTCSEEEEEETTEEEEEEEHHHHHH
T ss_pred HHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999999999999999999999999999988999999999976 5788999999999999999999999986
Q ss_pred HHHhcCCCCCCCCChHHHHHHhh
Q 008534 386 YFSSIGCSPQIAMNPAEFLLDLA 408 (562)
Q Consensus 386 ~f~~~g~~~~~~~npad~~~~~~ 408 (562)
.|. ..+..+++.+++
T Consensus 223 ~~~--------~~~~~~~f~~~~ 237 (238)
T d1vpla_ 223 RYK--------AQNIEEVFEEVV 237 (238)
T ss_dssp HTT--------CSSHHHHHHHHH
T ss_pred ccC--------CchHHHHHHHhh
Confidence 543 245666666543
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.3e-54 Score=428.95 Aligned_cols=216 Identities=29% Similarity=0.520 Sum_probs=182.2
Q ss_pred EEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh----
Q 008534 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (562)
Q Consensus 150 l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~---- 225 (562)
|+|+||+|+|+ ...+++|+||||+|++||++||+||||||||||+++|+|.+ . +.+|+|.+||+++..
T Consensus 2 I~~~nvsf~Y~------~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~-~-p~~G~I~i~g~~i~~~~~~ 73 (241)
T d2pmka1 2 ITFRNIRFRYK------PDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFY-I-PENGQVLIDGHDLALADPN 73 (241)
T ss_dssp EEEEEEEEESS------TTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSS-C-CSEEEEEETTEETTTSCHH
T ss_pred eEEEEEEEEeC------CCCcceEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcC-C-CCCCEEEECCEEecccchh
Confidence 79999999982 34567999999999999999999999999999999999854 3 458999999999863
Q ss_pred hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHH-----HHHHHHHcCCCccccccccCcccCCCChhH
Q 008534 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKR-----AIDVINELGLERCQDTMIGGSFVRGVSGGE 300 (562)
Q Consensus 226 ~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~-----v~~~l~~lgL~~~~~t~vg~~~~~~LSGGq 300 (562)
.+|++|+||+|++.+|+ .||+|||.|+.. ..+.+..... +.+.+. .++...++.++.. +..|||||
T Consensus 74 ~lr~~i~~v~Q~~~lf~-~Ti~eNi~~~~~-----~~~~~~~~~~~~~~~~~~~i~--~~~~~~~t~i~~~-g~~LSGGq 144 (241)
T d2pmka1 74 WLRRQVGVVLQDNVLLN-RSIIDNISLANP-----GMSVEKVIYAAKLAGAHDFIS--ELREGYNTIVGEQ-GAGLSGGQ 144 (241)
T ss_dssp HHHHHEEEECSSCCCTT-SBHHHHHCTTST-----TCCHHHHHHHHHHHTCHHHHT--TSTTGGGSBCSTT-TTCCCHHH
T ss_pred hhhceEEEEecccccCC-ccccccccccCc-----cccHHHHHHHHHHHhhHHHHH--hhhcchhhhcCCC-CCccCHHH
Confidence 57889999999999996 599999998632 1222222211 222222 3467778888754 57899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecCh
Q 008534 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 380 (562)
Q Consensus 301 rqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~ 380 (562)
||||+|||||+++|+|||||||||+||+.++..|++.|+++.+ ++|+|+|||+++. .+.||+|++|++|+|+++|++
T Consensus 145 ~QRvalARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l~~--~~~~D~i~vl~~G~Iv~~G~~ 221 (241)
T d2pmka1 145 RQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK-GRTVIIIAHRLST--VKNADRIIVMEKGKIVEQGKH 221 (241)
T ss_dssp HHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHT-TSEEEEECSSGGG--GTTSSEEEEEETTEEEEEECH
T ss_pred HHHHhhhhhhhcccchhhhhCCccccCHHHHHHHHHHHHHHhC-CCEEEEEECCHHH--HHhCCEEEEEECCEEEEECCH
Confidence 9999999999999999999999999999999999999999865 8999999999863 478999999999999999999
Q ss_pred HHHHH
Q 008534 381 SEAMA 385 (562)
Q Consensus 381 ~el~~ 385 (562)
++++.
T Consensus 222 ~ell~ 226 (241)
T d2pmka1 222 KELLS 226 (241)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 99974
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=2.5e-53 Score=421.48 Aligned_cols=217 Identities=26% Similarity=0.411 Sum_probs=187.6
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh--
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~-- 225 (562)
..|+++||+++| +++.+|+||||+|++||+++|+||||||||||+++|+|.+. +++|+|.++|+++..
T Consensus 5 ~~Lev~~l~k~y--------g~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~--p~~G~I~~~G~~i~~~~ 74 (240)
T d1ji0a_ 5 IVLEVQSLHVYY--------GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVR--AQKGKIIFNGQDITNKP 74 (240)
T ss_dssp EEEEEEEEEEEE--------TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECTTCC
T ss_pred eEEEEeeEEEEE--------CCEEEEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCC--CCccEEEeccccccccc
Confidence 479999999998 36789999999999999999999999999999999999653 568999999999853
Q ss_pred -h--ccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHc-CCCccccccccCcccCCCChhHH
Q 008534 226 -S--LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINEL-GLERCQDTMIGGSFVRGVSGGER 301 (562)
Q Consensus 226 -~--~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~l-gL~~~~~t~vg~~~~~~LSGGqr 301 (562)
. .+..|+|+||+..+|+.+||+||+.++...+.. +....+.++++++.+ +|.+..+.. +.+||||||
T Consensus 75 ~~~~~r~gi~~~~q~~~l~~~ltv~en~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~LSGG~~ 145 (240)
T d1ji0a_ 75 AHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKD----KEGIKRDLEWIFSLFPRLKERLKQL-----GGTLSGGEQ 145 (240)
T ss_dssp HHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTCCC----SSHHHHHHHHHHHHCHHHHTTTTSB-----SSSSCHHHH
T ss_pred HHHHHHhcccccCcccccCCcccHHHHHHHHHHhcCC----HHHHHHHHHHHHHHhhChHHHHhCc-----hhhCCHHHH
Confidence 1 244599999999999999999999987654322 223334455566655 566666654 568999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChH
Q 008534 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKAS 381 (562)
Q Consensus 302 qRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~ 381 (562)
|||+|||||+.+|+||||||||+|||+.++.++++.|++++++|+|||++||++. ++.++||||++|++|++++.|+++
T Consensus 146 Qrv~iAraL~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~-~~~~~~drv~vl~~G~iv~~g~~~ 224 (240)
T d1ji0a_ 146 QMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNAL-GALKVAHYGYVLETGQIVLEGKAS 224 (240)
T ss_dssp HHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHH-HHHHHCSEEEEEETTEEEEEEEHH
T ss_pred HHHHHHHHHHhCCCEeeecCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHH
Confidence 9999999999999999999999999999999999999999988999999999975 578999999999999999999999
Q ss_pred HHH
Q 008534 382 EAM 384 (562)
Q Consensus 382 el~ 384 (562)
++.
T Consensus 225 el~ 227 (240)
T d1ji0a_ 225 ELL 227 (240)
T ss_dssp HHH
T ss_pred HHh
Confidence 985
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=6.1e-53 Score=422.32 Aligned_cols=221 Identities=24% Similarity=0.390 Sum_probs=193.0
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
.|+++||+++| ++..||+||||+|++||+++|+||||||||||+++|+|.+. +++|+|.++|+++..
T Consensus 4 iL~v~nlsk~y--------g~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~--p~~G~I~~~g~~i~~~~~ 73 (254)
T d1g6ha_ 4 ILRTENIVKYF--------GEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLK--ADEGRVYFENKDITNKEP 73 (254)
T ss_dssp EEEEEEEEEEE--------TTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECTTCCH
T ss_pred eEEEEEEEEEE--------CCeEEEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCc--CCCcEEEECCEeccchhH
Confidence 69999999998 36789999999999999999999999999999999999643 568999999999853
Q ss_pred -h-ccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCC----------CCccHHHHHHHHHHHHHHcCCCccccccccCccc
Q 008534 226 -S-LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLP----------NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFV 293 (562)
Q Consensus 226 -~-~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~----------~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~ 293 (562)
. .+..|+||||++.+|+++||+||+.++...+.. ....++...+++.++++.+++.+..++. +
T Consensus 74 ~~~~~~gi~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~ 148 (254)
T d1g6ha_ 74 AELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRK-----A 148 (254)
T ss_dssp HHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSB-----G
T ss_pred HHHHHhcCCccCCccccCCCCeeeeeeeehhhhccccchhhhhhhcccccHHHHHHHHHHHHHhcCcchhccCc-----h
Confidence 1 344699999999999999999999987533211 1122344556788999999998877765 4
Q ss_pred CCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCe
Q 008534 294 RGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGS 373 (562)
Q Consensus 294 ~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~ 373 (562)
.+|||||||||+|||||+.+|+||||||||+|||+.++.+|++.|++++++|+|||++||++.. +.++||||++|++|+
T Consensus 149 ~~LSgG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~~-~~~~~Drv~vm~~G~ 227 (254)
T d1g6ha_ 149 GELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDI-VLNYIDHLYVMFNGQ 227 (254)
T ss_dssp GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCST-TGGGCSEEEEEETTE
T ss_pred hhCCcHHHHHHHHHHHHHhCcCchhhcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHH-HHHhCCEEEEEeCCE
Confidence 6899999999999999999999999999999999999999999999998889999999999875 789999999999999
Q ss_pred EEEecChHHHHH
Q 008534 374 LLYFGKASEAMA 385 (562)
Q Consensus 374 iv~~G~~~el~~ 385 (562)
|++.|+++|+.+
T Consensus 228 iv~~g~~~e~~~ 239 (254)
T d1g6ha_ 228 IIAEGRGEEEIK 239 (254)
T ss_dssp EEEEEESHHHHH
T ss_pred EEEEecHHHHhh
Confidence 999999998754
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.8e-53 Score=422.84 Aligned_cols=225 Identities=28% Similarity=0.474 Sum_probs=184.8
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh--
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~-- 225 (562)
..|+|+||+|+|+ ...++.+|+||||+|++||++||+||||||||||+++|+|.+ . +.+|+|++||+++..
T Consensus 10 g~I~~~nvsf~Y~-----~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~-~-p~~G~I~i~g~~i~~~~ 82 (251)
T d1jj7a_ 10 GLVQFQDVSFAYP-----NRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLY-Q-PTGGQLLLDGKPLPQYE 82 (251)
T ss_dssp CCEEEEEEEECCT-----TSTTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSS-C-CSEEEEEETTEEGGGBC
T ss_pred ceEEEEEEEEECC-----CCCCCEeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhccc-C-CCcCEEEECCEecchhh
Confidence 3699999999983 223567999999999999999999999999999999999854 3 458999999999853
Q ss_pred --hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCC-CccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHH
Q 008534 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPN-TLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (562)
Q Consensus 226 --~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrq 302 (562)
.+|++|+||+|++.+|+ .||+||+.|+....... ............+.++ .|++..++.++. .+..|||||||
T Consensus 83 ~~~~r~~i~~v~Q~~~lf~-~tv~eni~~g~~~~~~~~~~~~~~~~~~~~~~i~--~l~~g~~~~i~~-~~~~LSGGqkQ 158 (251)
T d1jj7a_ 83 HRYLHRQVAAVGQEPQVFG-RSLQENIAYGLTQKPTMEEITAAAVKSGAHSFIS--GLPQGYDTEVDE-AGSQLSGGQRQ 158 (251)
T ss_dssp HHHHHHHEEEECSSCCCCS-SBHHHHHHCSCSSCCCHHHHHHHHHHHTCHHHHH--TSTTGGGCBCCS-SCSSSCHHHHH
T ss_pred hHHHHHHhhhccccccccC-cchhhhhhhhhcccchHHHHHHHHHHHHHHHHHH--hccccchhhHhc-cCccCChhHce
Confidence 46788999999999997 59999999874321100 0001111122233443 456778888764 45789999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChH
Q 008534 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKAS 381 (562)
Q Consensus 303 Rv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~ 381 (562)
||+|||||+++|+|||||||||+||+.++.+|++.|+++.++ |+|||+|||+++ ..+.||||++|++|+|++.|+|+
T Consensus 159 RvaiARal~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~--~~~~aDrI~vl~~G~iv~~Gt~~ 236 (251)
T d1jj7a_ 159 AVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLS--LVEQADHILFLEGGAIREGGTHQ 236 (251)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHH--HHHTCSEEEEEETTEEEEEECHH
T ss_pred EEEEeeccccCCcEEEecCcCcccChhhHHHHHHHHHHHhhhcCCEEEEEeCCHH--HHHhCCEEEEEECCEEEEECCHH
Confidence 999999999999999999999999999999999999998654 899999999975 34779999999999999999999
Q ss_pred HHHH
Q 008534 382 EAMA 385 (562)
Q Consensus 382 el~~ 385 (562)
|+++
T Consensus 237 eLl~ 240 (251)
T d1jj7a_ 237 QLME 240 (251)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 9975
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=4e-53 Score=423.12 Aligned_cols=216 Identities=31% Similarity=0.490 Sum_probs=184.0
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh--
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~-- 225 (562)
..|+|+||+|+|+ ...+++|+||||+|++||++||+||||||||||+++|+|. +. +.+|+|.+||.++..
T Consensus 15 g~I~~~nvsf~Y~------~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl-~~-p~~G~I~i~g~~i~~~~ 86 (255)
T d2hyda1 15 GRIDIDHVSFQYN------DNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRF-YD-VTSGQILIDGHNIKDFL 86 (255)
T ss_dssp CCEEEEEEEECSC------SSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTS-SC-CSEEEEEETTEEGGGSC
T ss_pred CEEEEEEEEEEeC------CCCCcceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhc-CC-ccccccccCCEEcccCC
Confidence 3699999999983 2356899999999999999999999999999999999985 43 458999999999853
Q ss_pred --hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHc-------CCCccccccccCcccCCC
Q 008534 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINEL-------GLERCQDTMIGGSFVRGV 296 (562)
Q Consensus 226 --~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~l-------gL~~~~~t~vg~~~~~~L 296 (562)
.+|++|+||+|++.+|+ .||+|||.|+.. ...+++ +.++++.. .|++.++|.++.. +..|
T Consensus 87 ~~~lr~~i~~v~Q~~~lf~-~Ti~eNi~~g~~-----~~~~~~----~~~al~~~~l~~~i~~lp~gl~t~i~~~-g~~L 155 (255)
T d2hyda1 87 TGSLRNQIGLVQQDNILFS-DTVKENILLGRP-----TATDEE----VVEAAKMANAHDFIMNLPQGYDTEVGER-GVKL 155 (255)
T ss_dssp HHHHHHTEEEECSSCCCCS-SBHHHHHGGGCS-----SCCHHH----HHHHHHHTTCHHHHHTSTTGGGCBCCGG-GTTS
T ss_pred HHHhhheeeeeeccccCCC-CCHHHHHhccCc-----CCCHHH----HHHHHHHhCCHHHHHhccccccchhcCC-CCCc
Confidence 57889999999999997 599999998732 122322 22223222 4577889988754 5679
Q ss_pred ChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEE
Q 008534 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (562)
Q Consensus 297 SGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~ 376 (562)
||||||||+|||||+++|+|||||||||+||+.++..|++.|+++.+ ++|+|+|||+++. ...||+|++|++|+|++
T Consensus 156 SgGq~QRi~iARal~~~p~ililDEpts~LD~~t~~~i~~~l~~l~~-~~TvI~itH~~~~--~~~~D~ii~l~~G~iv~ 232 (255)
T d2hyda1 156 SGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSK-DRTTLIVAHRLST--ITHADKIVVIENGHIVE 232 (255)
T ss_dssp CHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT-TSEEEEECSSGGG--TTTCSEEEEEETTEEEE
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHH--HHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999874 8999999999864 47899999999999999
Q ss_pred ecChHHHHH
Q 008534 377 FGKASEAMA 385 (562)
Q Consensus 377 ~G~~~el~~ 385 (562)
.|+++|+++
T Consensus 233 ~G~~~eLl~ 241 (255)
T d2hyda1 233 TGTHRELIA 241 (255)
T ss_dssp EECHHHHHH
T ss_pred ECCHHHHHh
Confidence 999999975
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=1.1e-53 Score=424.55 Aligned_cols=219 Identities=29% Similarity=0.470 Sum_probs=181.8
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
+|+++||+|+|+ ..+++|+||||+|++||++||+||||||||||+++|+|.+ . |.+|+|.+||.++..
T Consensus 1 mle~knvsf~Y~-------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~-~-p~~G~I~i~g~~i~~~~~ 71 (242)
T d1mv5a_ 1 MLSARHVDFAYD-------DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFY-Q-PTAGEITIDGQPIDNISL 71 (242)
T ss_dssp CEEEEEEEECSS-------SSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSS-C-CSBSCEEETTEESTTTSC
T ss_pred CEEEEEEEEECC-------CCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhh-C-CCCCEEEECCEEeccccH
Confidence 489999999982 2457999999999999999999999999999999999854 3 458999999999863
Q ss_pred -hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHH--H-HcCCCccccccccCcccCCCChhHH
Q 008534 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVI--N-ELGLERCQDTMIGGSFVRGVSGGER 301 (562)
Q Consensus 226 -~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l--~-~lgL~~~~~t~vg~~~~~~LSGGqr 301 (562)
.+|++||||+|++.+|+. ||+||+.++... ...........+... + ...+++..++.++.. +..||||||
T Consensus 72 ~~~r~~i~~v~Q~~~lf~~-ti~eNi~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-g~~LSGGqk 145 (242)
T d1mv5a_ 72 ENWRSQIGFVSQDSAIMAG-TIRENLTYGLEG----DYTDEDLWQVLDLAFARSFVENMPDQLNTEVGER-GVKISGGQR 145 (242)
T ss_dssp SCCTTTCCEECCSSCCCCE-EHHHHTTSCTTS----CSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTT-SBCCCHHHH
T ss_pred HHHHhheEEEccccccCCc-chhhheeccccc----ccchhhHHHHHHHHHhhhhhccCcccccccccCC-CCCCCHHHH
Confidence 578899999999999986 999999876321 122322222211111 1 124566778888754 567999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChH
Q 008534 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKAS 381 (562)
Q Consensus 302 qRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~ 381 (562)
|||+|||||+++|+|||||||||+||+.++..|++.|+++. +|+|||+|||+++. ...||+|++|++|+|++.|+++
T Consensus 146 QRv~iARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~-~~~Tvi~itH~l~~--~~~~D~i~vl~~G~iv~~G~~~ 222 (242)
T d1mv5a_ 146 QRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRLST--IVDADKIYFIEKGQITGSGKHN 222 (242)
T ss_dssp HHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSHHH--HHHCSEEEEEETTEECCCSCHH
T ss_pred HHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHc-CCCEEEEEECCHHH--HHhCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999999999999987 48999999999753 4679999999999999999999
Q ss_pred HHHH
Q 008534 382 EAMA 385 (562)
Q Consensus 382 el~~ 385 (562)
|+++
T Consensus 223 eLl~ 226 (242)
T d1mv5a_ 223 ELVA 226 (242)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 9985
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=1.2e-52 Score=419.79 Aligned_cols=219 Identities=30% Similarity=0.486 Sum_probs=184.3
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh--
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~-- 225 (562)
..|+|+||+|+|+ ....++|+||||+|++||++||+||||||||||+++|+|.+ . +.+|+|.+||+++..
T Consensus 12 g~I~~~nvsf~Y~------~~~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~-~-p~~G~I~i~g~~i~~~~ 83 (253)
T d3b60a1 12 GDLEFRNVTFTYP------GREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFY-D-IDEGHILMDGHDLREYT 83 (253)
T ss_dssp CCEEEEEEEECSS------SSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTT-C-CSEEEEEETTEETTTBC
T ss_pred eEEEEEEEEEEeC------CCCCceeeceEEEEcCCCEEEEECCCCChHHHHHHHHhccc-C-CCccEEEECCcccchhh
Confidence 3699999999982 23567999999999999999999999999999999999854 3 458999999999863
Q ss_pred --hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHH-----HHHHHHHHcCCCccccccccCcccCCCCh
Q 008534 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEK-----RAIDVINELGLERCQDTMIGGSFVRGVSG 298 (562)
Q Consensus 226 --~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~-----~v~~~l~~lgL~~~~~t~vg~~~~~~LSG 298 (562)
.+|++|+||+|++.+|+ .|+++|+.++.. ...+.++..+ .+.++++. +++..++.++. .+..|||
T Consensus 84 ~~~~r~~i~~v~Q~~~l~~-~ti~~n~~~~~~----~~~~~~~i~~a~~~~~l~~~i~~--l~~gl~t~~~~-~~~~LSG 155 (253)
T d3b60a1 84 LASLRNQVALVSQNVHLFN-DTVANNIAYART----EEYSREQIEEAARMAYAMDFINK--MDNGLDTIIGE-NGVLLSG 155 (253)
T ss_dssp HHHHHHTEEEECSSCCCCS-SBHHHHHHTTTT----SCCCHHHHHHHHHTTTCHHHHHH--STTGGGSBCCT-TSCSSCH
T ss_pred hhhhhheEEEEeeccccCC-cchhhhhhhcCc----ccCCHHHHHHHHHHHhHHHHHHh--ccccchhhhcC-CCCCcCH
Confidence 57788999999999997 599999998632 2223332222 12233433 35677888875 4678999
Q ss_pred hHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEec
Q 008534 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (562)
Q Consensus 299 GqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G 378 (562)
||||||+|||||+++|+|||||||||+||+.++..|++.|+++.+ ++|||+|||+++. ...||+|++|++|+|++.|
T Consensus 156 GqkQRvaiARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l~~--~~~~D~v~vl~~G~Iv~~G 232 (253)
T d3b60a1 156 GQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRLST--IEQADEIVVVEDGIIVERG 232 (253)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT-TSEEEEECSCGGG--TTTCSEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHHHHHhcc-CCEEEEEECCHHH--HHhCCEEEEEECCEEEEEC
Confidence 999999999999999999999999999999999999999999875 8999999999863 4789999999999999999
Q ss_pred ChHHHHH
Q 008534 379 KASEAMA 385 (562)
Q Consensus 379 ~~~el~~ 385 (562)
+|+++++
T Consensus 233 ~~~eLl~ 239 (253)
T d3b60a1 233 THSELLA 239 (253)
T ss_dssp CHHHHHH
T ss_pred CHHHHHh
Confidence 9999975
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=3.7e-52 Score=410.80 Aligned_cols=197 Identities=27% Similarity=0.483 Sum_probs=177.6
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh--hccCcEEEEccCCCCCCCCCHHHHHHH
Q 008534 175 GITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SLKSKIGFVTQDDVLFPHLTVKETLTY 252 (562)
Q Consensus 175 ~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--~~~~~igyV~Q~~~l~~~lTV~enl~~ 252 (562)
||||++. ||+++|+||||||||||+++|+|.+. +++|+|.+||+++.+ ..+++||||||++.+||++||+|||.|
T Consensus 17 ~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~--p~~G~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~ltV~enl~~ 93 (240)
T d2onka1 17 NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVK--PDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAY 93 (240)
T ss_dssp EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHT
T ss_pred EEEEEeC-CEEEEEECCCCChHHHHHHHHHcCCC--CCceEEEECCEECCcCCHHHcCceeeccchhhcccchhhHhhhh
Confidence 8999995 68999999999999999999999653 569999999999863 346789999999999999999999999
Q ss_pred HHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 008534 253 AALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTAL 332 (562)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~ 332 (562)
+.. ..++.+.++++.++++.+||.+..+. ++++|||||||||+|||||+.+|+||||||||+|||+.++.
T Consensus 94 ~l~-----~~~~~~~~~~v~~~l~~~gl~~~~~~-----~~~~LSGG~kQRvaiAral~~~P~illlDEPts~LD~~~~~ 163 (240)
T d2onka1 94 GLR-----NVERVERDRRVREMAEKLGIAHLLDR-----KPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKG 163 (240)
T ss_dssp TCT-----TSCHHHHHHHHHHHHHTTTCTTTTTC-----CGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHH
T ss_pred hhc-----ccCHHHHHHHHHHHHHhcCcHhhhhC-----ChhhCCHHHHHHHHHHHHHhccCCceEecCccccCCHHHHH
Confidence 742 34567777889999999999887765 45799999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHHH
Q 008534 333 RIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (562)
Q Consensus 333 ~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~~ 385 (562)
.+++.|+++.++ |.|||++||++. ++.++||||++|++|++++.|++++++.
T Consensus 164 ~i~~~i~~l~~~~g~tvi~vtHd~~-~~~~~adri~vm~~G~ii~~G~~~el~~ 216 (240)
T d2onka1 164 VLMEELRFVQREFDVPILHVTHDLI-EAAMLADEVAVMLNGRIVEKGKLKELFS 216 (240)
T ss_dssp HHHHHHHHHHHHHTCCEEEEESCHH-HHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHHHHHHHhcCCeEEEEeCCHH-HHHHhCCEEEEEECCEEEEEecHHHHhc
Confidence 999999999765 999999999975 5788999999999999999999999863
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1.5e-46 Score=380.79 Aligned_cols=196 Identities=26% Similarity=0.395 Sum_probs=160.6
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHH
Q 008534 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKE 248 (562)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~~~igyV~Q~~~l~~~lTV~e 248 (562)
+++||+||||+|++||++||+||||||||||+++|+|.+. +.+|.|.++| +|+||+|++.+|+. ||+|
T Consensus 48 g~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~--p~~G~I~~~g---------~i~~v~Q~~~l~~~-tv~e 115 (281)
T d1r0wa_ 48 GNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELE--ASEGIIKHSG---------RVSFCSQFSWIMPG-TIKE 115 (281)
T ss_dssp TCEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSC--CSEEEEECCS---------CEEEECSSCCCCSE-EHHH
T ss_pred CCeEEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCc--CCCcEEEECC---------EEEEEeccccccCc-eeec
Confidence 5689999999999999999999999999999999999553 4589999998 39999999999985 9999
Q ss_pred HHHHHHhhCCCCCccHHHHHHHHHH---HHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 008534 249 TLTYAALLRLPNTLTKQQKEKRAID---VINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSG 325 (562)
Q Consensus 249 nl~~~~~~~~~~~~~~~~~~~~v~~---~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsg 325 (562)
||.|+.. .........+.. ......+++..++.++. .+.+|||||||||+|||||+++|+||||||||++
T Consensus 116 ni~~~~~------~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~-~~~~LSgGqkQRv~lARaL~~~p~illLDEPts~ 188 (281)
T d1r0wa_ 116 NIIFGVS------YDEYRYKSVVKACQLQQDITKFAEQDNTVLGE-GGVTLSGGQRARISLARAVYKDADLYLLDSPFGY 188 (281)
T ss_dssp HHTTTSC------CCHHHHHHHHHHTTCHHHHTTSTTGGGCEECT-TCTTSCHHHHHHHHHHHHHHSCCSEEEEESCCCS
T ss_pred ccccccc------ccchHHHHHHHHHHhHHHHHhchhhhhhhhhh-hccCCCHHHHHHHHHHHHHHhCccchhhcCcccc
Confidence 9988632 112211111111 11223566677777764 3567999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHHH
Q 008534 326 LDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (562)
Q Consensus 326 LD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~~ 385 (562)
||+.++..+++.+......++|+|++||+++ ..+.||||++|++|+|++.|+++|++.
T Consensus 189 LD~~~~~~i~~~~~~~~~~~~tvi~itH~~~--~l~~aDrI~vl~~G~i~~~Gt~~eL~~ 246 (281)
T d1r0wa_ 189 LDVFTEEQVFESCVCKLMANKTRILVTSKME--HLRKADKILILHQGSSYFYGTFSELQS 246 (281)
T ss_dssp SCHHHHHHHHHHCCCCCTTTSEEEEECSCHH--HHHTCSEEEEEETTEEEEEECHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhCCCEEEEEechHH--HHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 9999999998865444445899999999974 457899999999999999999999864
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.3e-46 Score=371.31 Aligned_cols=208 Identities=27% Similarity=0.421 Sum_probs=178.7
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh--
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~-- 225 (562)
+.|+++||+++ .+|+||||+|++||++||+||||||||||+++|+|. . + .+|+|.++|+++..
T Consensus 2 ~il~~~dv~~~------------~~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl-~-~-~~G~I~~~g~~i~~~~ 66 (231)
T d1l7vc_ 2 IVMQLQDVAES------------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGM-T-S-GKGSIQFAGQPLEAWS 66 (231)
T ss_dssp EEEEEEEECCT------------TTSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTS-C-C-CSSEEEESSSBGGGSC
T ss_pred eEEEEECcccC------------ceecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCC-C-C-CceEEEECCEECCcCC
Confidence 46899998643 379999999999999999999999999999999994 3 3 47999999998753
Q ss_pred --hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHH
Q 008534 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (562)
Q Consensus 226 --~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqR 303 (562)
.++...+|++|+.......++++++.++...+ ...+.+.++++.+++.+..++. ++.||||||||
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~~~l~~~~~~~-----~~~LSgG~~Qr 133 (231)
T d1l7vc_ 67 ATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDK--------TRTELLNDVAGALALDDKLGRS-----TNQLSGGEWQR 133 (231)
T ss_dssp HHHHHHHEEEECSCCCCCSSCBHHHHHHHHCSCT--------TCHHHHHHHHHHTTCTTTTTSB-----GGGCCHHHHHH
T ss_pred HHHHHhhceeeeccccCCccccHHHHhhhccchh--------hHHHHHHHHHHhcCCHhHhCcC-----hhhcCHHHHHH
Confidence 34456899999977655679999998764211 2234577888999998877654 46899999999
Q ss_pred HHHHHHHhh-------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEE
Q 008534 304 VCIGNEIII-------NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (562)
Q Consensus 304 v~IAraLl~-------~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~ 376 (562)
|+|||||++ +|+||||||||+|||+.++..+.+.|++++++|+|||++||+++ ++.++||||++|++|++++
T Consensus 134 v~iA~al~~~~p~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl~-~~~~~~dri~vl~~G~iv~ 212 (231)
T d1l7vc_ 134 VRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLN-HTLRHAHRAWLLKGGKMLA 212 (231)
T ss_dssp HHHHHHHHHHCTTTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCHH-HHHHHCSBCCBEETTEECC
T ss_pred HHHHHHHHhhCcccCCCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHHCCEEEEEECCEEEE
Confidence 999999997 77999999999999999999999999999989999999999976 4789999999999999999
Q ss_pred ecChHHHH
Q 008534 377 FGKASEAM 384 (562)
Q Consensus 377 ~G~~~el~ 384 (562)
.|+++|++
T Consensus 213 ~G~~~ev~ 220 (231)
T d1l7vc_ 213 SGRREEVL 220 (231)
T ss_dssp CSBHHHHS
T ss_pred ECCHHHHh
Confidence 99999974
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=1.4e-43 Score=342.12 Aligned_cols=196 Identities=25% Similarity=0.410 Sum_probs=161.6
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhcc
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~ 228 (562)
.|+++||++.| +++||+||||+|++||+++|+||||||||||+++|+|.+. |.+|+|.+||+++.+ .+
T Consensus 2 ~lev~~ls~~y---------~~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~--p~~G~I~~~g~~i~~-~~ 69 (200)
T d1sgwa_ 2 KLEIRDLSVGY---------DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK--PLKGEIIYNGVPITK-VK 69 (200)
T ss_dssp EEEEEEEEEES---------SSEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEEGGG-GG
T ss_pred eEEEEEEEEEe---------CCeEEeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccc--cCCCEEEECCEehhH-hc
Confidence 48999999987 3579999999999999999999999999999999999653 568999999999854 57
Q ss_pred CcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHH
Q 008534 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGN 308 (562)
Q Consensus 229 ~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAr 308 (562)
.+++|+||+..++..+|++|++.+....+... ..+ ..+.+.++.+++.+. +. .+.+|||||||||+|||
T Consensus 70 ~~i~~~~~~~~~~~~~t~~~~l~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~-~~-----~~~~LSgG~~qrv~ia~ 138 (200)
T d1sgwa_ 70 GKIFFLPEEIIVPRKISVEDYLKAVASLYGVK-VNK----NEIMDALESVEVLDL-KK-----KLGELSQGTIRRVQLAS 138 (200)
T ss_dssp GGEEEECSSCCCCTTSBHHHHHHHHHHHTTCC-CCH----HHHHHHHHHTTCCCT-TS-----BGGGSCHHHHHHHHHHH
T ss_pred CcEEEEeecccCCCCcCHHHHHHHHHHhcCCc-cCH----HHHHHHHHHcCCccc-cc-----ccCcCCCcHHHHHHHHH
Confidence 78999999999999999999999887664322 222 335667777776543 22 24589999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcC
Q 008534 309 EIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK 371 (562)
Q Consensus 309 aLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~ 371 (562)
||+.+|+||||||||+|||+.++..+++.|+++.+++.++|+++|+. ..+||++.+|++
T Consensus 139 al~~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~~~----l~~~D~~~~l~~ 197 (200)
T d1sgwa_ 139 TLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREE----LSYCDVNENLHK 197 (200)
T ss_dssp HTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSC----CTTSSEEEEGGG
T ss_pred HHhcCCCEEEEcCcccccCHHHHHHHHHHHHHHHhCCCEEEEEEech----hhhcchhhheee
Confidence 99999999999999999999999999999999876544444444431 257999999865
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.59 E-value=7.7e-17 Score=148.25 Aligned_cols=155 Identities=14% Similarity=0.103 Sum_probs=99.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEccC-----CCCCCCCCHHHHHHHHHhhCCC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQD-----DVLFPHLTVKETLTYAALLRLP 259 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~~~igyV~Q~-----~~l~~~lTV~enl~~~~~~~~~ 259 (562)
.++|+||||||||||+++|+|.+. +..|.+.+.+.+.....+ ++++.... ..+.. .+..+..
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~l~--~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~--------- 68 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVERLG--KRAIGFWTEEVRDPETKK-RTGFRIITTEGKKKIFSS-KFFTSKK--------- 68 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG--GGEEEEEEEEEC-------CCEEEEEETTCCEEEEEE-TTCCCSS---------
T ss_pred EEEEECCCCcHHHHHHHHHHhcCC--CCcceEEECCcchHHHHH-hhhhhhhhhhHHHHHHhh-hhhhhhh---------
Confidence 379999999999999999999653 447889888776432211 22222111 11100 0000000
Q ss_pred CCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 008534 260 NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQ 339 (562)
Q Consensus 260 ~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~ 339 (562)
.. ...+. + .....+|+|+++|.++++++..+|++|++|||....+ ....+.+.|.
T Consensus 69 -~~-------------~~~~~----~-----~~~~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~--~~~~~~~~l~ 123 (178)
T d1ye8a1 69 -LV-------------GSYGV----N-----VQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMEL--FSKKFRDLVR 123 (178)
T ss_dssp -EE-------------TTEEE----C-----HHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGG--GCHHHHHHHH
T ss_pred -hh-------------hhhhc----C-----cchhhhhhhhhHHHHHHHHHhcCCCceeecCCCccch--hhHHHHHHHH
Confidence 00 00000 0 1123589999999999999999999999999854433 3355666666
Q ss_pred HHHH-CCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecC
Q 008534 340 DIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (562)
Q Consensus 340 ~l~~-~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (562)
++.+ .+.|+|+++|+.. ....+|++..+.+|+++.-+.
T Consensus 124 ~~l~~~~~~il~~~h~~~--~~~~~~~i~~~~~~~i~~v~~ 162 (178)
T d1ye8a1 124 QIMHDPNVNVVATIPIRD--VHPLVKEIRRLPGAVLIELTP 162 (178)
T ss_dssp HHHTCTTSEEEEECCSSC--CSHHHHHHHTCTTCEEEECCT
T ss_pred HHhccCCCEEEEEEccHH--HHHhhceEEEEeCCEEEEECC
Confidence 6554 4789999999964 356899999999999987653
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.12 E-value=4.9e-10 Score=110.98 Aligned_cols=77 Identities=23% Similarity=0.281 Sum_probs=65.0
Q ss_pred cCCCChhHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEE
Q 008534 293 VRGVSGGERKRVCIGNEII----INPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLIL 368 (562)
Q Consensus 293 ~~~LSGGqrqRv~IAraLl----~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~v 368 (562)
...+|+|||+.+.++..++ .+|.++++|||-++|||.....+.+.|+++.+ +.=||++||.|. +.+.+|+++.
T Consensus 217 ~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~-~~QviitTHsp~--~~~~~d~~~~ 293 (308)
T d1e69a_ 217 LSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSK-HTQFIVITHNKI--VMEAADLLHG 293 (308)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTT-TSEEEEECCCTT--GGGGCSEEEE
T ss_pred hhhhhHHHhhHHHHHhhhhhhhhccCchhhhhhccccCCHHHHHHHHHHHHHhcc-CCEEEEEECCHH--HHHhcccEEE
Confidence 4569999999988877643 46799999999999999999999999999874 578999999975 5688999965
Q ss_pred --EcCC
Q 008534 369 --LGKG 372 (562)
Q Consensus 369 --L~~G 372 (562)
+.+|
T Consensus 294 v~~~~g 299 (308)
T d1e69a_ 294 VTMVNG 299 (308)
T ss_dssp EEESSS
T ss_pred EEEeCC
Confidence 6666
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.81 E-value=3.2e-09 Score=108.85 Aligned_cols=74 Identities=22% Similarity=0.309 Sum_probs=62.6
Q ss_pred CCCChhHHHHHHHHHHH----hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEE
Q 008534 294 RGVSGGERKRVCIGNEI----IINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL 369 (562)
Q Consensus 294 ~~LSGGqrqRv~IAraL----l~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL 369 (562)
..||||||.+++||..| ..++++++||||+++||+..+..+.+.|++++..+.-+|+|||+|. +...+|+++.+
T Consensus 331 ~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~~--~~~~ad~~~~V 408 (427)
T d1w1wa_ 331 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNT--MFEKSDALVGV 408 (427)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHH--HHTTCSEEEEE
T ss_pred hhhccchHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCCEEEEEeCCHH--HHHhcccEEEE
Confidence 56899999998877554 3577899999999999999999999999988655566999999974 67899998755
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.94 E-value=6.7e-06 Score=78.26 Aligned_cols=44 Identities=23% Similarity=0.263 Sum_probs=34.4
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHHCCcEEEEEecCC
Q 008534 312 INPSLLFLDEPTSGLDSTTALRIV-QMLQDIAEAGKTVVTTIHQP 355 (562)
Q Consensus 312 ~~P~iLlLDEPTsgLD~~~~~~i~-~~L~~l~~~g~Tvii~tH~~ 355 (562)
.+..++|+||+..|=|+.....+. ..+..+.+.+..++++||..
T Consensus 113 ~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~ 157 (224)
T d1ewqa2 113 TENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYF 157 (224)
T ss_dssp CTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCH
T ss_pred CCCcEEeecccccCcchhhhcchHHHHHHHHhhcCcceEEeeech
Confidence 455699999999999998777664 44445566688999999974
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.87 E-value=1.1e-05 Score=77.14 Aligned_cols=44 Identities=18% Similarity=0.224 Sum_probs=34.0
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHHC-CcEEEEEecCC
Q 008534 312 INPSLLFLDEPTSGLDSTTALRIVQM-LQDIAEA-GKTVVTTIHQP 355 (562)
Q Consensus 312 ~~P~iLlLDEPTsgLD~~~~~~i~~~-L~~l~~~-g~Tvii~tH~~ 355 (562)
.+..++|+||+..|=|+.....+... +..+..+ +..+|++||..
T Consensus 119 ~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~ 164 (234)
T d1wb9a2 119 TEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYF 164 (234)
T ss_dssp CTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCG
T ss_pred ccccEEeecccccCCChhhhhHHHHHhhhhhhccccceEEEecchH
Confidence 34569999999999999998888654 5567554 46788888864
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=97.55 E-value=0.00015 Score=69.66 Aligned_cols=36 Identities=28% Similarity=0.271 Sum_probs=29.2
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHc
Q 008534 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSG 205 (562)
Q Consensus 170 ~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G 205 (562)
.+-|+++..=+.+|+++.|.|++|+|||||+.-|+-
T Consensus 22 ~~~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~ 57 (277)
T d1cr2a_ 22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQAL 57 (277)
T ss_dssp CTTHHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHH
T ss_pred chhHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 345666554489999999999999999999877763
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=97.46 E-value=4.3e-06 Score=75.05 Aligned_cols=33 Identities=24% Similarity=0.224 Sum_probs=29.4
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHc
Q 008534 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSG 205 (562)
Q Consensus 172 iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G 205 (562)
.+++.++.+.+| +++|+|||||||||+|.+|.-
T Consensus 14 ~~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~ 46 (222)
T d1qhla_ 14 GFFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVT 46 (222)
T ss_dssp TEEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHH
T ss_pred CEeeEEEEcCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 467888888887 999999999999999999974
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.20 E-value=9.1e-05 Score=65.39 Aligned_cols=26 Identities=38% Similarity=0.580 Sum_probs=23.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 008534 182 PGEVLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 182 ~Ge~~alvGpsGsGKSTLl~~L~G~l 207 (562)
.|++++|.||+||||||+.+.|+.++
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~l 28 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLP 28 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999999654
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.17 E-value=8.8e-05 Score=67.07 Aligned_cols=25 Identities=44% Similarity=0.767 Sum_probs=22.9
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 008534 183 GEVLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 183 Ge~~alvGpsGsGKSTLl~~L~G~l 207 (562)
|.+++|+||||||||||++.|....
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~ 26 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERI 26 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHhhC
Confidence 8899999999999999999998644
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=97.09 E-value=0.00084 Score=63.85 Aligned_cols=46 Identities=20% Similarity=0.192 Sum_probs=33.8
Q ss_pred HHhhCCCEEEEeCCCCC-----CCHHHHHHHHHHHHHHHHC-CcEEEEEecC
Q 008534 309 EIIINPSLLFLDEPTSG-----LDSTTALRIVQMLQDIAEA-GKTVVTTIHQ 354 (562)
Q Consensus 309 aLl~~P~iLlLDEPTsg-----LD~~~~~~i~~~L~~l~~~-g~Tvii~tH~ 354 (562)
.-..+|+++++|--++- -|......++..|+.+++. +.+||++.|-
T Consensus 128 ~~~~~~~lvviD~l~~~~~~~~~~~~~~~~~~~~l~~la~~~~~~vi~v~H~ 179 (274)
T d1nlfa_ 128 RAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHA 179 (274)
T ss_dssp HHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred HhccCccEEecCchhhhccccccchhhHHHHHHHHHHHhhcCCCceehhhhc
Confidence 44579999999965431 2666667888888888754 8888888884
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=97.08 E-value=0.00012 Score=64.14 Aligned_cols=23 Identities=52% Similarity=0.592 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~l 207 (562)
+++|+|++|||||||++.|...+
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l 26 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPAL 26 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 78999999999999999998643
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=97.07 E-value=0.012 Score=53.45 Aligned_cols=34 Identities=26% Similarity=0.382 Sum_probs=26.4
Q ss_pred ceeece-EEEEeCCeEEEEECCCCCcHHHHHHHHH
Q 008534 171 DILNGI-TGSVNPGEVLALMGPSGSGKTTLLNLLS 204 (562)
Q Consensus 171 ~iL~~v-s~~i~~Ge~~alvGpsGsGKSTLl~~L~ 204 (562)
+-|+++ ++=+++|+++.|.|++|+|||||.--++
T Consensus 13 ~~LD~~l~GGi~~G~~~~I~G~~G~GKT~la~~~~ 47 (242)
T d1tf7a1 13 EGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFL 47 (242)
T ss_dssp TTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHH
T ss_pred HHHHHhhcCCCcCCeEEEEEeCCCCCHHHHHHHHH
Confidence 345554 3459999999999999999999975443
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=96.99 E-value=0.00017 Score=63.38 Aligned_cols=27 Identities=33% Similarity=0.549 Sum_probs=24.0
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 008534 181 NPGEVLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 181 ~~Ge~~alvGpsGsGKSTLl~~L~G~l 207 (562)
+.+.++.|+||+||||||+.+.|+.++
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999999754
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=96.93 E-value=0.00021 Score=62.77 Aligned_cols=27 Identities=30% Similarity=0.340 Sum_probs=24.1
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 008534 181 NPGEVLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 181 ~~Ge~~alvGpsGsGKSTLl~~L~G~l 207 (562)
++|-++.|+|++||||||+.+.|+-++
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L 30 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTL 30 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 468899999999999999999999654
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=96.86 E-value=0.0024 Score=59.24 Aligned_cols=150 Identities=16% Similarity=0.172 Sum_probs=79.0
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHHHHHHHHhhCC
Q 008534 179 SVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRL 258 (562)
Q Consensus 179 ~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~ 258 (562)
=+++|.++.|.||+|+|||||+.-++-... . .| ..+.|+.-+ .+..+.+........
T Consensus 22 Gi~~gsl~li~G~pGsGKT~l~~qia~~~~--~-~~--------------~~~~~is~e------~~~~~~~~~~~~~~~ 78 (242)
T d1tf7a2 22 GFFKDSIILATGATGTGKTLLVSRFVENAC--A-NK--------------ERAILFAYE------ESRAQLLRNAYSWGM 78 (242)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHHHHH--T-TT--------------CCEEEEESS------SCHHHHHHHHHTTSC
T ss_pred CCcCCeEEEEEeCCCCCHHHHHHHHHHHHH--H-hc--------------cccceeecc------CCHHHHHHHHHHcCC
Confidence 489999999999999999999977774221 1 11 123444322 344444444332211
Q ss_pred CCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHH-HHHHH-hhCCCEEEEeCCCC---CCCHHHHHH
Q 008534 259 PNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC-IGNEI-IINPSLLFLDEPTS---GLDSTTALR 333 (562)
Q Consensus 259 ~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~-IAraL-l~~P~iLlLDEPTs---gLD~~~~~~ 333 (562)
... ++. ..+.....+. ........ ..+. |..++ -.+|++++.|--+. +.+......
T Consensus 79 ----~~~-------~~~-~~~~~~~~~~-----~~~~~~~~--~~~~~i~~~i~~~~~~~vviDs~~~~~~~~~~~~~~~ 139 (242)
T d1tf7a2 79 ----DFE-------EME-RQNLLKIVCA-----YPESAGLE--DHLQIIKSEINDFKPARIAIDSLSALARGVSNNAFRQ 139 (242)
T ss_dssp ----CHH-------HHH-HTTSEEECCC-----CGGGSCHH--HHHHHHHHHHHTTCCSEEEEECHHHHTSSSCHHHHHH
T ss_pred ----ChH-------HHh-hcCceEEEEe-----ecchhhHH--HHHHHHHHHHHhcCCceeeeecchhhhcCCCHHHHHH
Confidence 111 111 1121111110 01111111 1122 22222 24799999997554 345666566
Q ss_pred HHHHHHHHH-HCCcEEEEEecCC---------ChHHHhcCCEEEEEc
Q 008534 334 IVQMLQDIA-EAGKTVVTTIHQP---------SSRLFHKFDKLILLG 370 (562)
Q Consensus 334 i~~~L~~l~-~~g~Tvii~tH~~---------~~~i~~~~D~i~vL~ 370 (562)
.+..|..++ +.+.+++++.|-. ...+...+|-|+.|+
T Consensus 140 ~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ad~vi~l~ 186 (242)
T d1tf7a2 140 FVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQ 186 (242)
T ss_dssp HHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEE
T ss_pred HHHHHHHHHHHcCCeEEEEEeeEeeccccccCCcceeeecceEEEEE
Confidence 666665654 4588988888742 112446789998885
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.86 E-value=0.00029 Score=66.64 Aligned_cols=34 Identities=29% Similarity=0.464 Sum_probs=24.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEE
Q 008534 182 PGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSIT 217 (562)
Q Consensus 182 ~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~ 217 (562)
+|+.++++|+||+|||||+|.|.|.... ..|+|.
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~--~T~~vs 127 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKL--RVSEVS 127 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCC--C-----
T ss_pred cCCeEEEECCCCCCHHHHHHhhcchhhh--hccCcc
Confidence 5889999999999999999999985432 246553
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=96.81 E-value=0.00026 Score=62.22 Aligned_cols=24 Identities=33% Similarity=0.601 Sum_probs=21.4
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 008534 184 EVLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 184 e~~alvGpsGsGKSTLl~~L~G~l 207 (562)
..++|.||+|||||||.+.|+..+
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~ 31 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVF 31 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999999743
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.74 E-value=0.00036 Score=64.87 Aligned_cols=25 Identities=32% Similarity=0.606 Sum_probs=22.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcC
Q 008534 182 PGEVLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 182 ~Ge~~alvGpsGsGKSTLl~~L~G~ 206 (562)
+|.++.|+||||+|||||.+.|.-.
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~ 25 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKT 25 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999999988753
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=96.71 E-value=0.00041 Score=60.93 Aligned_cols=27 Identities=26% Similarity=0.582 Sum_probs=23.4
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 008534 181 NPGEVLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 181 ~~Ge~~alvGpsGsGKSTLl~~L~G~l 207 (562)
++|-.++|.||+||||||+.+.|+-.+
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l 29 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAEL 29 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHh
Confidence 456789999999999999999999643
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=96.68 E-value=0.00044 Score=59.61 Aligned_cols=34 Identities=24% Similarity=0.336 Sum_probs=24.9
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEe
Q 008534 184 EVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP 222 (562)
Q Consensus 184 e~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~ 222 (562)
+++.|.||+|||||||.+.|.... .|.+.++..+
T Consensus 3 klIii~G~pGsGKTTla~~L~~~~-----~~~~~~~~d~ 36 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIAKN-----PGFYNINRDD 36 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS-----TTEEEECHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhC-----CCCEEechHH
Confidence 478899999999999999876321 2556655443
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=96.61 E-value=0.00053 Score=59.97 Aligned_cols=25 Identities=28% Similarity=0.449 Sum_probs=22.5
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 008534 183 GEVLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 183 Ge~~alvGpsGsGKSTLl~~L~G~l 207 (562)
..++.|.|++||||||+.+.|+..+
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l 27 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999999755
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=96.60 E-value=0.00052 Score=59.66 Aligned_cols=33 Identities=27% Similarity=0.473 Sum_probs=25.5
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCE
Q 008534 184 EVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDH 221 (562)
Q Consensus 184 e~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~ 221 (562)
.++.|.||+||||||+.+.|+..+ ++.+.++|.
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~-----~~~~~~~~d 35 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQL-----DNSAYIEGD 35 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS-----SSEEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHc-----CCCEEEehH
Confidence 478999999999999999999643 344555543
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.59 E-value=0.00051 Score=60.71 Aligned_cols=24 Identities=33% Similarity=0.398 Sum_probs=20.7
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 008534 184 EVLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 184 e~~alvGpsGsGKSTLl~~L~G~l 207 (562)
.+++|+|++|||||||++-|...+
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~L 25 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAAA 25 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHH
Confidence 378999999999999998887654
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.55 E-value=0.00056 Score=68.67 Aligned_cols=27 Identities=26% Similarity=0.629 Sum_probs=22.8
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHH
Q 008534 178 GSVNPGEVLALMGPSGSGKTTLLNLLS 204 (562)
Q Consensus 178 ~~i~~Ge~~alvGpsGsGKSTLl~~L~ 204 (562)
+.+.++.+++|+|||||||||+|.+|+
T Consensus 20 i~f~~~~l~~i~G~NGsGKS~ileAi~ 46 (427)
T d1w1wa_ 20 VGFGESNFTSIIGPNGSGKSNMMDAIS 46 (427)
T ss_dssp EECTTCSEEEEECSTTSSHHHHHHHHH
T ss_pred EeCCCCCEEEEECCCCCCHHHHHHHHH
Confidence 444545599999999999999999985
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.54 E-value=0.00048 Score=60.44 Aligned_cols=24 Identities=46% Similarity=0.592 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGRLM 208 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~l~ 208 (562)
.+.|.||+|+|||||++.++..+.
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~~~l~ 26 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHH
Confidence 588999999999999999997653
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=96.53 E-value=0.00055 Score=59.82 Aligned_cols=21 Identities=43% Similarity=0.608 Sum_probs=19.0
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 008534 186 LALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 186 ~alvGpsGsGKSTLl~~L~G~ 206 (562)
++|+||+||||||+.+.|+-+
T Consensus 7 I~i~G~pGsGKTTia~~La~~ 27 (173)
T d1rkba_ 7 ILLTGTPGVGKTTLGKELASK 27 (173)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 679999999999999999853
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=96.51 E-value=0.00058 Score=58.60 Aligned_cols=23 Identities=39% Similarity=0.651 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~l 207 (562)
.+.|+||+||||||+.+.|+-.+
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQL 26 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47888999999999999999644
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=96.49 E-value=0.00068 Score=59.69 Aligned_cols=24 Identities=33% Similarity=0.452 Sum_probs=21.6
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 008534 184 EVLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 184 e~~alvGpsGsGKSTLl~~L~G~l 207 (562)
.+++|.|++||||||+.+.|+-++
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~l 25 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDNL 25 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 589999999999999999998644
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.44 E-value=0.00047 Score=61.69 Aligned_cols=26 Identities=42% Similarity=0.452 Sum_probs=23.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 008534 182 PGEVLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 182 ~Ge~~alvGpsGsGKSTLl~~L~G~l 207 (562)
.|-++.|+|++||||||+.+.|+-++
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l 43 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYL 43 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 57799999999999999999998543
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.39 E-value=0.00073 Score=60.36 Aligned_cols=22 Identities=59% Similarity=0.610 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
++||-||+|||||||.+.|.-.
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~ 45 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQT 45 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999853
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.36 E-value=0.00033 Score=66.43 Aligned_cols=34 Identities=32% Similarity=0.440 Sum_probs=22.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEE
Q 008534 182 PGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSIT 217 (562)
Q Consensus 182 ~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~ 217 (562)
+|..++++|+||+|||||+|.|.|... ...|+|.
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~--~~t~~vs 129 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELG--LRTNEIS 129 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC------------
T ss_pred ccceEEEECCCCccHHHHHHhhccHhH--hhhcccc
Confidence 478899999999999999999998542 1246554
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=96.29 E-value=0.00098 Score=60.18 Aligned_cols=23 Identities=30% Similarity=0.387 Sum_probs=21.0
Q ss_pred CeEEEEECCCCCcHHHHHHHHHc
Q 008534 183 GEVLALMGPSGSGKTTLLNLLSG 205 (562)
Q Consensus 183 Ge~~alvGpsGsGKSTLl~~L~G 205 (562)
..+++|+||+||||||+.+.|+-
T Consensus 6 p~iI~i~G~pGSGKsT~a~~La~ 28 (194)
T d1qf9a_ 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999995
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=96.28 E-value=0.00084 Score=60.71 Aligned_cols=22 Identities=41% Similarity=0.614 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|++|+|||||++.|.|.
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~ 46 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHhcCC
Confidence 4999999999999999999984
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.21 E-value=0.001 Score=60.15 Aligned_cols=22 Identities=45% Similarity=0.779 Sum_probs=19.5
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 008534 186 LALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 186 ~alvGpsGsGKSTLl~~L~G~l 207 (562)
++|+||||||||||++.|+-.+
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~ 25 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 7899999999999999997543
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.21 E-value=0.0014 Score=58.40 Aligned_cols=29 Identities=24% Similarity=0.495 Sum_probs=25.8
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHcC
Q 008534 178 GSVNPGEVLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 178 ~~i~~Ge~~alvGpsGsGKSTLl~~L~G~ 206 (562)
+=+++|+++.|.||+|+|||||..-++..
T Consensus 18 GGi~~G~v~~i~G~~GsGKT~l~l~la~~ 46 (242)
T d1n0wa_ 18 GGIETGSITEMFGEFRTGKTQICHTLAVT 46 (242)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcCCEEEEEEeCCCCCHHHHHHHHHHH
Confidence 46899999999999999999999877753
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.14 E-value=0.0014 Score=59.27 Aligned_cols=23 Identities=30% Similarity=0.583 Sum_probs=20.4
Q ss_pred eEEEEECCCCCcHHHHHHHHHcC
Q 008534 184 EVLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 184 e~~alvGpsGsGKSTLl~~L~G~ 206 (562)
..++|+||||+|||||++.|...
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~ 26 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITK 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999988853
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=96.13 E-value=0.0013 Score=60.98 Aligned_cols=21 Identities=38% Similarity=0.662 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 008534 185 VLALMGPSGSGKTTLLNLLSG 205 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G 205 (562)
+++|+|+.|||||||++.|..
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~ 22 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGR 22 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHH
Confidence 689999999999999999974
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.08 E-value=0.0015 Score=59.11 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=21.0
Q ss_pred eEEEEECCCCCcHHHHHHHHHcC
Q 008534 184 EVLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 184 e~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.+++|+||+||||||+.+.|+-.
T Consensus 9 ~iI~i~GppGSGKsT~a~~La~~ 31 (196)
T d1ukza_ 9 SVIFVLGGPGAGKGTQCEKLVKD 31 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999963
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.02 E-value=0.00099 Score=59.59 Aligned_cols=20 Identities=40% Similarity=0.657 Sum_probs=19.2
Q ss_pred EEEECCCCCcHHHHHHHHHc
Q 008534 186 LALMGPSGSGKTTLLNLLSG 205 (562)
Q Consensus 186 ~alvGpsGsGKSTLl~~L~G 205 (562)
+||+|++++|||||++.|+|
T Consensus 4 VaiiG~~nvGKSSLin~L~~ 23 (185)
T d1lnza2 4 VGLVGFPSVGKSTLLSVVSS 23 (185)
T ss_dssp EEEESSTTSSHHHHHHHSEE
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 79999999999999999987
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=96.02 E-value=0.0017 Score=57.36 Aligned_cols=22 Identities=32% Similarity=0.555 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|++|+|||||++.|+|.
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~ 23 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKK 23 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999984
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.02 E-value=0.0015 Score=59.42 Aligned_cols=20 Identities=55% Similarity=0.821 Sum_probs=18.4
Q ss_pred EEEECCCCCcHHHHHHHHHc
Q 008534 186 LALMGPSGSGKTTLLNLLSG 205 (562)
Q Consensus 186 ~alvGpsGsGKSTLl~~L~G 205 (562)
++|+||||||||||.+.|+-
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~ 22 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQ 22 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 67999999999999999875
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=96.01 E-value=0.0018 Score=58.31 Aligned_cols=25 Identities=36% Similarity=0.515 Sum_probs=22.2
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHc
Q 008534 181 NPGEVLALMGPSGSGKTTLLNLLSG 205 (562)
Q Consensus 181 ~~Ge~~alvGpsGsGKSTLl~~L~G 205 (562)
++|=.++|+||+||||||+.+.|+-
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~ 25 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAK 25 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHH
Confidence 3566788999999999999999995
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=96.00 E-value=0.0013 Score=58.36 Aligned_cols=22 Identities=36% Similarity=0.643 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
-++|+|++|+|||||++.|.|.
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~ 23 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGK 23 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4799999999999999999985
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.00 E-value=0.0012 Score=59.89 Aligned_cols=25 Identities=24% Similarity=0.411 Sum_probs=22.8
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHc
Q 008534 181 NPGEVLALMGPSGSGKTTLLNLLSG 205 (562)
Q Consensus 181 ~~Ge~~alvGpsGsGKSTLl~~L~G 205 (562)
+.+.++.|+||+||||||+.+.|+-
T Consensus 6 ~~~~iI~l~G~pGSGKsT~a~~La~ 30 (194)
T d3adka_ 6 KKSKIIFVVGGPGSGKGTQCEKIVQ 30 (194)
T ss_dssp HTSCEEEEEECTTSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4567999999999999999999996
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.94 E-value=0.0017 Score=58.77 Aligned_cols=23 Identities=43% Similarity=0.702 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~l 207 (562)
.++|+|++|||||||++.|.|.-
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~~ 27 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTDS 27 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999853
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=95.91 E-value=0.0018 Score=57.07 Aligned_cols=22 Identities=41% Similarity=0.622 Sum_probs=19.5
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 008534 186 LALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 186 ~alvGpsGsGKSTLl~~L~G~l 207 (562)
++|+|++||||||+.+.|+-.+
T Consensus 3 I~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6788999999999999999643
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.89 E-value=0.002 Score=57.99 Aligned_cols=21 Identities=29% Similarity=0.433 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 008534 185 VLALMGPSGSGKTTLLNLLSG 205 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G 205 (562)
+++|+||+||||||..+.|+-
T Consensus 3 iI~i~GppGSGKsT~a~~La~ 23 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVE 23 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999985
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=95.88 E-value=0.00049 Score=64.01 Aligned_cols=44 Identities=25% Similarity=0.235 Sum_probs=31.2
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCC
Q 008534 181 NPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS 224 (562)
Q Consensus 181 ~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~ 224 (562)
++|-++.|.|.||||||||.+.|.-++.....--.+.+||..+.
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~iR 65 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIR 65 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCceEEEEcchHHH
Confidence 57889999999999999999999743321000134677876553
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.87 E-value=0.002 Score=55.05 Aligned_cols=22 Identities=41% Similarity=0.655 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|++|+|||||++.|.+.
T Consensus 2 KI~liG~~nvGKSSLln~l~~~ 23 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKND 23 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999984
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=95.84 E-value=0.0021 Score=56.72 Aligned_cols=24 Identities=29% Similarity=0.421 Sum_probs=21.2
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 008534 184 EVLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 184 e~~alvGpsGsGKSTLl~~L~G~l 207 (562)
.++.|.|++||||||+.+.|+.++
T Consensus 2 kiivi~G~~GsGKTT~~~~La~~L 25 (194)
T d1nksa_ 2 KIGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 367889999999999999999755
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.83 E-value=0.0021 Score=56.87 Aligned_cols=21 Identities=38% Similarity=0.536 Sum_probs=19.1
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 008534 186 LALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 186 ~alvGpsGsGKSTLl~~L~G~ 206 (562)
+.|+||+||||||+.+.|+-.
T Consensus 3 I~i~G~pGSGKsT~a~~La~~ 23 (182)
T d1zina1 3 LVLMGLPGAGKGTQAEKIVAA 23 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 679999999999999999853
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.82 E-value=0.0021 Score=58.85 Aligned_cols=45 Identities=16% Similarity=0.237 Sum_probs=31.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEccCCCCC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLF 241 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~~~igyV~Q~~~l~ 241 (562)
++||-||+|||||||.+.|+-.+... + + ......+.++.+|+.+.
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l~~~---~--------~-~~~~~~~~vi~~D~yy~ 48 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLLGQN---E--------V-DYRQKQVVILSQDSFYR 48 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTGG---G--------S-CGGGCSEEEEEGGGGBC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhchh---c--------c-ccCCCceEEEecccccc
Confidence 68999999999999999998544211 0 0 11223467888887754
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=95.82 E-value=0.0022 Score=55.02 Aligned_cols=22 Identities=32% Similarity=0.413 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|++|+|||||++.|.+.
T Consensus 2 kivlvG~~~vGKSsLi~~l~~~ 23 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKLG 23 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3689999999999999998863
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.81 E-value=0.0022 Score=56.51 Aligned_cols=22 Identities=45% Similarity=0.738 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
+++|+|.+|+|||||+|.|.|.
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999973
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=95.80 E-value=0.0016 Score=57.21 Aligned_cols=22 Identities=41% Similarity=0.670 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|++|||||||++.|.+.
T Consensus 15 kI~lvG~~~vGKTsLl~~l~~~ 36 (186)
T d1f6ba_ 15 KLVFLGLDNAGKTTLLHMLKDD 36 (186)
T ss_dssp EEEEEEETTSSHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999999874
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=95.78 E-value=0.0024 Score=59.92 Aligned_cols=34 Identities=29% Similarity=0.409 Sum_probs=25.9
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECC
Q 008534 183 GEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYND 220 (562)
Q Consensus 183 Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G 220 (562)
...+.|.||+|||||||.+.|++.+. .+-+.+|+
T Consensus 32 P~~ilL~GpPGtGKT~la~~la~~~~----~~~~~i~~ 65 (273)
T d1gvnb_ 32 PTAFLLGGQPGSGKTSLRSAIFEETQ----GNVIVIDN 65 (273)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHTT----TCCEEECT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhh----cceEEEec
Confidence 34688999999999999999998543 23345554
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=95.78 E-value=0.0019 Score=58.03 Aligned_cols=21 Identities=29% Similarity=0.408 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 008534 185 VLALMGPSGSGKTTLLNLLSG 205 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G 205 (562)
.+.|+||+||||||+.+.|+-
T Consensus 5 ~I~i~GppGsGKsT~a~~La~ 25 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKT 25 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 477999999999999999985
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=95.77 E-value=0.0024 Score=56.74 Aligned_cols=22 Identities=45% Similarity=0.661 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
+++|+|.+|+|||||++.|+|.
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~ 28 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGV 28 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999985
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=95.77 E-value=0.002 Score=57.04 Aligned_cols=22 Identities=27% Similarity=0.381 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.+.|+|++||||||+-+.|+-.
T Consensus 4 ~Iil~G~~GsGKSTia~~LA~~ 25 (170)
T d1e6ca_ 4 PIFMVGARGCGMTTVGRELARA 25 (170)
T ss_dssp CEEEESCTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4678999999999999999853
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=95.74 E-value=0.0022 Score=55.28 Aligned_cols=21 Identities=38% Similarity=0.597 Sum_probs=19.7
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 008534 186 LALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 186 ~alvGpsGsGKSTLl~~L~G~ 206 (562)
++|+|++|+|||||++.+.+.
T Consensus 8 I~ivG~~~vGKSSLi~~~~~~ 28 (169)
T d1upta_ 8 ILILGLDGAGKTTILYRLQVG 28 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 889999999999999999875
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=95.70 E-value=0.0024 Score=56.80 Aligned_cols=22 Identities=32% Similarity=0.585 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.+||+|.+|+|||||++.|+|.
T Consensus 10 kV~iiG~~~~GKSTLin~l~~~ 31 (186)
T d1mkya2 10 KVAIVGRPNVGKSTLFNAILNK 31 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 5899999999999999999974
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=95.70 E-value=0.0017 Score=57.83 Aligned_cols=21 Identities=29% Similarity=0.561 Sum_probs=19.7
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 008534 186 LALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 186 ~alvGpsGsGKSTLl~~L~G~ 206 (562)
+||+|.+++|||||++.|+|.
T Consensus 4 VaivG~~nvGKSTLin~L~~~ 24 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRA 24 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSS
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 799999999999999999973
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.66 E-value=0.0026 Score=56.00 Aligned_cols=22 Identities=41% Similarity=0.542 Sum_probs=19.3
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 008534 186 LALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 186 ~alvGpsGsGKSTLl~~L~G~l 207 (562)
+.|+|++||||||+-+.|+-++
T Consensus 4 IvliG~~G~GKSTig~~La~~l 25 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKAL 25 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5678999999999999999654
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=95.66 E-value=0.0029 Score=54.83 Aligned_cols=23 Identities=39% Similarity=0.692 Sum_probs=20.9
Q ss_pred eEEEEECCCCCcHHHHHHHHHcC
Q 008534 184 EVLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 184 e~~alvGpsGsGKSTLl~~L~G~ 206 (562)
=.++|+|++|+|||||++.|+|.
T Consensus 2 ~kI~lvG~~nvGKSsLin~l~~~ 24 (161)
T d2gj8a1 2 MKVVIAGRPNAGKSSLLNALAGR 24 (161)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35899999999999999999984
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=95.62 E-value=0.0029 Score=56.44 Aligned_cols=22 Identities=32% Similarity=0.508 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.+.|+||+||||||+.+.|+-.
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~ 23 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEK 23 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999964
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.59 E-value=0.003 Score=56.87 Aligned_cols=23 Identities=22% Similarity=0.385 Sum_probs=20.6
Q ss_pred eEEEEECCCCCcHHHHHHHHHcC
Q 008534 184 EVLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 184 e~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.+++++|.+|||||||.+.|+..
T Consensus 3 ~li~l~GlpgsGKSTla~~L~~~ 25 (213)
T d1bifa1 3 TLIVMVGLPARGKTYISKKLTRY 25 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 37899999999999999999953
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.55 E-value=0.0032 Score=56.34 Aligned_cols=24 Identities=29% Similarity=0.408 Sum_probs=20.9
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHH
Q 008534 181 NPGEVLALMGPSGSGKTTLLNLLS 204 (562)
Q Consensus 181 ~~Ge~~alvGpsGsGKSTLl~~L~ 204 (562)
++-+++.++|++||||||+.+-++
T Consensus 12 ~~p~liil~G~pGsGKST~a~~l~ 35 (172)
T d1yj5a2 12 PNPEVVVAVGFPGAGKSTFIQEHL 35 (172)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 344699999999999999999886
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=95.54 E-value=0.0031 Score=57.65 Aligned_cols=23 Identities=30% Similarity=0.637 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~l 207 (562)
+++|-||+||||||+.+.|+-.+
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~l 27 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDF 27 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999999643
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=95.45 E-value=0.0036 Score=56.86 Aligned_cols=23 Identities=43% Similarity=0.732 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~l 207 (562)
+++|.||+||||||+-+.|+-++
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~ 27 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEAL 27 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 89999999999999999999754
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.37 E-value=0.0037 Score=55.56 Aligned_cols=22 Identities=36% Similarity=0.588 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.+.|+||+||||||+.+.|+-.
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~ 23 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEK 23 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3689999999999999999853
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=95.37 E-value=0.0036 Score=55.53 Aligned_cols=21 Identities=24% Similarity=0.376 Sum_probs=19.0
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 008534 185 VLALMGPSGSGKTTLLNLLSG 205 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G 205 (562)
.+.|+||+||||||..+.|+-
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~ 22 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIME 22 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 367999999999999999985
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=95.34 E-value=0.0037 Score=54.49 Aligned_cols=22 Identities=36% Similarity=0.650 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|++|+|||||++.|.+.
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~ 25 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGE 25 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHcCC
Confidence 4789999999999999999874
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=95.31 E-value=0.0019 Score=56.80 Aligned_cols=22 Identities=36% Similarity=0.584 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|++++|||||+|.|.|.
T Consensus 18 ~I~lvG~~NvGKSSL~n~L~~~ 39 (188)
T d1puia_ 18 EVAFAGRSNAGKSSALNTLTNQ 39 (188)
T ss_dssp EEEEEECTTSSHHHHHTTTCCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5999999999999999999873
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.18 E-value=0.0051 Score=56.32 Aligned_cols=27 Identities=30% Similarity=0.474 Sum_probs=24.5
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHc
Q 008534 179 SVNPGEVLALMGPSGSGKTTLLNLLSG 205 (562)
Q Consensus 179 ~i~~Ge~~alvGpsGsGKSTLl~~L~G 205 (562)
=+++|+++.|.||+|||||||..-++-
T Consensus 30 Gi~~G~~~li~G~pGsGKT~l~lq~~~ 56 (251)
T d1szpa2 30 GVETGSITELFGEFRTGKSQLCHTLAV 56 (251)
T ss_dssp SEESSSEEEEEESTTSSHHHHHHHHTT
T ss_pred CCcCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 589999999999999999999987763
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.12 E-value=0.0054 Score=54.62 Aligned_cols=22 Identities=41% Similarity=0.641 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.+.|+||.||||||+.+.|+-.
T Consensus 4 rIvl~G~pGSGKtT~a~~La~~ 25 (180)
T d1akya1 4 RMVLIGPPGAGKGTQAPNLQER 25 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3678999999999999999963
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=95.10 E-value=0.0047 Score=55.35 Aligned_cols=21 Identities=38% Similarity=0.692 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 008534 185 VLALMGPSGSGKTTLLNLLSG 205 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G 205 (562)
++||.|++||||||+.+.|.-
T Consensus 5 IIgitG~~gSGKstva~~l~~ 25 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLRS 25 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 789999999999999999973
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=95.07 E-value=0.0039 Score=56.02 Aligned_cols=24 Identities=38% Similarity=0.391 Sum_probs=21.4
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 008534 184 EVLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 184 e~~alvGpsGsGKSTLl~~L~G~l 207 (562)
-+++|-|+.||||||+++.|+..+
T Consensus 10 ~~I~ieG~~GsGKTTl~~~L~~~l 33 (197)
T d2vp4a1 10 FTVLIEGNIGSGKTTYLNHFEKYK 33 (197)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGGT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 389999999999999999999644
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=95.07 E-value=0.0057 Score=55.35 Aligned_cols=22 Identities=36% Similarity=0.543 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+||+||||||+.+.|+-.
T Consensus 8 rIiliG~PGSGKtT~a~~La~~ 29 (189)
T d2ak3a1 8 RAAIMGAPGSGKGTVSSRITKH 29 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999963
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.04 E-value=0.005 Score=55.87 Aligned_cols=22 Identities=32% Similarity=0.356 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
-++|+|++|+|||||++.|.+.
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~ 23 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTG 23 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999874
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=94.99 E-value=0.0018 Score=56.19 Aligned_cols=22 Identities=36% Similarity=0.564 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|++|+|||||++.|+|.
T Consensus 2 kI~liG~~n~GKSSLin~l~g~ 23 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNE 23 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3799999999999999999984
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=94.93 E-value=0.0055 Score=53.60 Aligned_cols=22 Identities=32% Similarity=0.449 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|.+|||||||++.|.+.
T Consensus 17 kI~vvG~~~~GKSsLi~rl~~~ 38 (177)
T d1zj6a1 17 KVIIVGLDNAGKTTILYQFSMN 38 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999999974
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=94.89 E-value=0.0056 Score=58.29 Aligned_cols=23 Identities=30% Similarity=0.588 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~l 207 (562)
.++|+|.+|+|||||+|.|.|.-
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 48999999999999999999953
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=94.86 E-value=0.65 Score=43.62 Aligned_cols=23 Identities=30% Similarity=0.377 Sum_probs=20.6
Q ss_pred CeEEEEECCCCCcHHHHHHHHHc
Q 008534 183 GEVLALMGPSGSGKTTLLNLLSG 205 (562)
Q Consensus 183 Ge~~alvGpsGsGKSTLl~~L~G 205 (562)
..+++|.|..|.|||||.+.+..
T Consensus 44 ~~~v~I~GmgGiGKTtLA~~v~~ 66 (277)
T d2a5yb3 44 SFFLFLHGRAGSGKSVIASQALS 66 (277)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998864
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=94.86 E-value=0.006 Score=54.38 Aligned_cols=20 Identities=40% Similarity=0.609 Sum_probs=19.4
Q ss_pred EEEECCCCCcHHHHHHHHHc
Q 008534 186 LALMGPSGSGKTTLLNLLSG 205 (562)
Q Consensus 186 ~alvGpsGsGKSTLl~~L~G 205 (562)
+||+|+..||||||++.|+|
T Consensus 8 IaiiG~~naGKSTL~n~L~~ 27 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTE 27 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHT
T ss_pred EEEEeCCCCcHHHHHHHHHH
Confidence 89999999999999999997
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.77 E-value=0.0049 Score=56.81 Aligned_cols=26 Identities=23% Similarity=0.359 Sum_probs=23.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 008534 182 PGEVLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 182 ~Ge~~alvGpsGsGKSTLl~~L~G~l 207 (562)
++.+++|-|+-||||||+++.|+..+
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l 26 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLC 26 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 36789999999999999999999755
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=94.72 E-value=0.007 Score=52.76 Aligned_cols=22 Identities=41% Similarity=0.584 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|++|+|||||++.+.+.
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~~ 25 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIASG 25 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3689999999999999988763
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=94.69 E-value=0.0092 Score=55.06 Aligned_cols=26 Identities=31% Similarity=0.525 Sum_probs=23.2
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHH
Q 008534 179 SVNPGEVLALMGPSGSGKTTLLNLLS 204 (562)
Q Consensus 179 ~i~~Ge~~alvGpsGsGKSTLl~~L~ 204 (562)
=+++|+++.|.||+|||||||.--++
T Consensus 32 Glp~G~~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 32 GIETQAITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHH
T ss_pred CccCCEEEEEEcCCCCCHHHHHHHHH
Confidence 48999999999999999999986554
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=94.69 E-value=0.0092 Score=54.39 Aligned_cols=28 Identities=29% Similarity=0.426 Sum_probs=24.9
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHc
Q 008534 178 GSVNPGEVLALMGPSGSGKTTLLNLLSG 205 (562)
Q Consensus 178 ~~i~~Ge~~alvGpsGsGKSTLl~~L~G 205 (562)
+=+++|+++.|.|++|+|||||.--++-
T Consensus 29 GGl~~G~l~~i~G~~G~GKT~~~l~~a~ 56 (258)
T d2i1qa2 29 GGLESQSVTEFAGVFGSGKTQIMHQSCV 56 (258)
T ss_dssp SSEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCccCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 3599999999999999999999877764
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.68 E-value=0.0083 Score=55.79 Aligned_cols=22 Identities=41% Similarity=0.626 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.+.|.||+|+||||++++|+..
T Consensus 54 ~lll~GPpG~GKTt~a~~la~~ 75 (253)
T d1sxja2 54 AAMLYGPPGIGKTTAAHLVAQE 75 (253)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999963
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.63 E-value=0.0082 Score=55.28 Aligned_cols=27 Identities=30% Similarity=0.396 Sum_probs=23.8
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 008534 181 NPGEVLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 181 ~~Ge~~alvGpsGsGKSTLl~~L~G~l 207 (562)
+.|-+++|-|+-||||||+.+.|...+
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L 27 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEAL 27 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHHH
Confidence 468899999999999999999998644
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=94.58 E-value=0.0087 Score=54.53 Aligned_cols=26 Identities=31% Similarity=0.466 Sum_probs=23.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 008534 182 PGEVLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 182 ~Ge~~alvGpsGsGKSTLl~~L~G~l 207 (562)
.|.+++|-|+.||||||+++.|.-.+
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L 26 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETL 26 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 48899999999999999999998654
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=94.57 E-value=0.0082 Score=55.34 Aligned_cols=21 Identities=43% Similarity=0.588 Sum_probs=19.3
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 008534 186 LALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 186 ~alvGpsGsGKSTLl~~L~G~ 206 (562)
+.|.||+|+|||||+++|+..
T Consensus 48 lll~Gp~G~GKTtla~~iak~ 68 (231)
T d1iqpa2 48 LLFAGPPGVGKTTAALALARE 68 (231)
T ss_dssp EEEESCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 789999999999999999963
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=94.53 E-value=0.0098 Score=55.00 Aligned_cols=25 Identities=36% Similarity=0.542 Sum_probs=20.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcC
Q 008534 182 PGEVLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 182 ~Ge~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.+.+++++||+|+||||.+-=|+-+
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~ 29 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRY 29 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4679999999999999988666743
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.48 E-value=0.0098 Score=54.72 Aligned_cols=27 Identities=22% Similarity=0.276 Sum_probs=24.4
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHc
Q 008534 179 SVNPGEVLALMGPSGSGKTTLLNLLSG 205 (562)
Q Consensus 179 ~i~~Ge~~alvGpsGsGKSTLl~~L~G 205 (562)
=|++|+++.|.||+|||||||.-.++.
T Consensus 33 Gip~G~~~~i~G~~GsGKT~lalq~~~ 59 (258)
T d1v5wa_ 33 GIESMAITEAFGEFRTGKTQLSHTLCV 59 (258)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999999877763
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=94.43 E-value=0.0094 Score=55.24 Aligned_cols=24 Identities=13% Similarity=0.350 Sum_probs=21.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHc
Q 008534 182 PGEVLALMGPSGSGKTTLLNLLSG 205 (562)
Q Consensus 182 ~Ge~~alvGpsGsGKSTLl~~L~G 205 (562)
.+..++|.||+|+|||||++.++-
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~ 51 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGIN 51 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCcHHHHHHHHHH
Confidence 467899999999999999998874
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=94.43 E-value=0.0091 Score=55.22 Aligned_cols=21 Identities=43% Similarity=0.782 Sum_probs=19.3
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 008534 186 LALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 186 ~alvGpsGsGKSTLl~~L~G~ 206 (562)
+.+.||+|+||||+.++|+..
T Consensus 38 ~L~~GPpGtGKT~lA~~la~~ 58 (238)
T d1in4a2 38 VLLAGPPGLGKTTLAHIIASE 58 (238)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 679999999999999999963
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.37 E-value=0.0096 Score=52.22 Aligned_cols=21 Identities=33% Similarity=0.619 Sum_probs=19.0
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 008534 186 LALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 186 ~alvGpsGsGKSTLl~~L~G~ 206 (562)
++|+|++|+|||||++.+.+.
T Consensus 5 i~~vG~~~vGKSsLi~~~~~~ 25 (175)
T d1ky3a_ 5 VIILGDSGVGKTSLMHRYVND 25 (175)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHcC
Confidence 789999999999999988763
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=94.34 E-value=0.0092 Score=59.03 Aligned_cols=24 Identities=29% Similarity=0.447 Sum_probs=21.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHc
Q 008534 182 PGEVLALMGPSGSGKTTLLNLLSG 205 (562)
Q Consensus 182 ~Ge~~alvGpsGsGKSTLl~~L~G 205 (562)
..-+++|.||+|||||||++.|..
T Consensus 53 ~~~~IgitG~pGaGKSTLi~~l~~ 76 (327)
T d2p67a1 53 NTLRLGVTGTPGAGKSTFLEAFGM 76 (327)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHH
T ss_pred CceEEEeeCCCCCCHHHHHHHHHH
Confidence 356899999999999999999985
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=94.25 E-value=0.0088 Score=52.45 Aligned_cols=22 Identities=41% Similarity=0.616 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|++|+|||||++.+.+.
T Consensus 18 kI~vvG~~~vGKSsLi~~l~~~ 39 (176)
T d1fzqa_ 18 RILLLGLDNAGKTTLLKQLASE 39 (176)
T ss_dssp EEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999763
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.23 E-value=0.011 Score=51.92 Aligned_cols=20 Identities=30% Similarity=0.499 Sum_probs=18.5
Q ss_pred EEEECCCCCcHHHHHHHHHc
Q 008534 186 LALMGPSGSGKTTLLNLLSG 205 (562)
Q Consensus 186 ~alvGpsGsGKSTLl~~L~G 205 (562)
++++|++|+|||||++.+.+
T Consensus 8 i~vvG~~~vGKTsLi~~l~~ 27 (169)
T d3raba_ 8 ILIIGNSSVGKTSFLFRYAD 27 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHc
Confidence 88999999999999998765
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=94.23 E-value=0.0087 Score=59.06 Aligned_cols=31 Identities=26% Similarity=0.432 Sum_probs=25.7
Q ss_pred EEEEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 008534 177 TGSVNPGEVLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 177 s~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l 207 (562)
..-++.|.-+.|.||.|||||||++.|.+.+
T Consensus 160 ~~~v~~~~nili~G~tgSGKTT~l~al~~~i 190 (323)
T d1g6oa_ 160 KDGIAIGKNVIVCGGTGSGKTTYIKSIMEFI 190 (323)
T ss_dssp HHHHHHTCCEEEEESTTSSHHHHHHHHGGGS
T ss_pred HHHHHhCCCEEEEeeccccchHHHHHHhhhc
Confidence 3345667779999999999999999999744
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=94.19 E-value=0.01 Score=57.96 Aligned_cols=25 Identities=28% Similarity=0.526 Sum_probs=21.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcC
Q 008534 182 PGEVLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 182 ~Ge~~alvGpsGsGKSTLl~~L~G~ 206 (562)
|+.-+.++||+|+|||.|.|+|+..
T Consensus 48 ~~~~iLl~GPpG~GKT~lAkalA~~ 72 (309)
T d1ofha_ 48 TPKNILMIGPTGVGKTEIARRLAKL 72 (309)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHhhc
Confidence 3345678999999999999999974
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=94.14 E-value=0.012 Score=53.68 Aligned_cols=20 Identities=50% Similarity=0.808 Sum_probs=19.0
Q ss_pred EEEEECCCCCcHHHHHHHHH
Q 008534 185 VLALMGPSGSGKTTLLNLLS 204 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~ 204 (562)
++||.|+.||||||+.+++.
T Consensus 4 iIgITG~igSGKStv~~~l~ 23 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFT 23 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 78999999999999999997
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.10 E-value=0.012 Score=54.07 Aligned_cols=21 Identities=33% Similarity=0.667 Sum_probs=19.2
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 008534 186 LALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 186 ~alvGpsGsGKSTLl~~L~G~ 206 (562)
+.|.||+|+||||++++|+..
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~ 56 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKE 56 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHH
Confidence 679999999999999999963
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=94.09 E-value=0.011 Score=54.66 Aligned_cols=21 Identities=48% Similarity=0.809 Sum_probs=19.1
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 008534 186 LALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 186 ~alvGpsGsGKSTLl~~L~G~ 206 (562)
+.+.||+|+||||+.++|++.
T Consensus 38 ~Ll~GPpG~GKTtla~~la~~ 58 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAHE 58 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999974
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.06 E-value=0.012 Score=51.35 Aligned_cols=22 Identities=32% Similarity=0.462 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|++|+|||||++.+.+.
T Consensus 5 Ki~viG~~~vGKTsli~~l~~~ 26 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999988763
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.04 E-value=0.012 Score=51.80 Aligned_cols=20 Identities=40% Similarity=0.718 Sum_probs=18.3
Q ss_pred EEEECCCCCcHHHHHHHHHc
Q 008534 186 LALMGPSGSGKTTLLNLLSG 205 (562)
Q Consensus 186 ~alvGpsGsGKSTLl~~L~G 205 (562)
++|+|++|+|||||++.+.+
T Consensus 7 i~vvG~~~vGKTsLi~~~~~ 26 (175)
T d2f9la1 7 VVLIGDSGVGKSNLLSRFTR 26 (175)
T ss_dssp EEEESSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 88999999999999997765
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=93.95 E-value=0.012 Score=57.57 Aligned_cols=44 Identities=23% Similarity=0.443 Sum_probs=32.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEccCCCCCCC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPH 243 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~~~igyV~Q~~~l~~~ 243 (562)
++||-|++||||||+.+.|...+.... . ...+..+++|+.+.++
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~~~~-~--------------~~~v~~Is~D~F~~~~ 125 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLSRWP-E--------------HRRVELITTDGFLHPN 125 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHTTST-T--------------CCCEEEEEGGGGBCCH
T ss_pred EEEEeCCCCCCCcHHHHHHHHHHhhhc-C--------------CCceEEEeeeeeECCc
Confidence 899999999999999999986442101 1 1347888999887763
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.93 E-value=0.013 Score=50.91 Aligned_cols=20 Identities=15% Similarity=0.464 Sum_probs=17.9
Q ss_pred EEEECCCCCcHHHHHHHHHc
Q 008534 186 LALMGPSGSGKTTLLNLLSG 205 (562)
Q Consensus 186 ~alvGpsGsGKSTLl~~L~G 205 (562)
++|+|++|+|||||++-+.+
T Consensus 5 v~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 5 MVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999987664
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.91 E-value=0.014 Score=53.69 Aligned_cols=26 Identities=35% Similarity=0.544 Sum_probs=24.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 008534 182 PGEVLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 182 ~Ge~~alvGpsGsGKSTLl~~L~G~l 207 (562)
+|.+++|=|+-||||||+.+.|+-++
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L 27 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKL 27 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CeEEEEEECCCCCcHHHHHHHHHHHH
Confidence 68999999999999999999999765
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=93.86 E-value=0.017 Score=53.26 Aligned_cols=25 Identities=36% Similarity=0.353 Sum_probs=20.8
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 008534 183 GEVLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 183 Ge~~alvGpsGsGKSTLl~~L~G~l 207 (562)
..+++++||+|+||||.+-=|+-++
T Consensus 10 ~~vi~lvGp~GvGKTTTiaKLA~~~ 34 (207)
T d1ls1a2 10 RNLWFLVGLQGSGKTTTAAKLALYY 34 (207)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4588999999999999987777543
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.86 E-value=0.012 Score=59.64 Aligned_cols=22 Identities=41% Similarity=0.723 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
-+||+|.+|+|||||+|.|.|.
T Consensus 58 ~Iai~G~~n~GKSSLiNaL~G~ 79 (400)
T d1tq4a_ 58 NVAVTGETGSGKSSFINTLRGI 79 (400)
T ss_dssp EEEEEECTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3899999999999999999995
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.77 E-value=0.016 Score=51.42 Aligned_cols=20 Identities=45% Similarity=0.615 Sum_probs=18.7
Q ss_pred EEEECCCCCcHHHHHHHHHc
Q 008534 186 LALMGPSGSGKTTLLNLLSG 205 (562)
Q Consensus 186 ~alvGpsGsGKSTLl~~L~G 205 (562)
++|+|++|+|||||++.+.+
T Consensus 8 i~ivG~~~vGKTsLi~~l~~ 27 (186)
T d2f7sa1 8 LLALGDSGVGKTTFLYRYTD 27 (186)
T ss_dssp EEEESCTTSSHHHHHHHHHC
T ss_pred EEEECCCCcCHHHHHHHHhc
Confidence 78999999999999998885
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=93.70 E-value=0.016 Score=57.13 Aligned_cols=24 Identities=25% Similarity=0.436 Sum_probs=21.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHc
Q 008534 182 PGEVLALMGPSGSGKTTLLNLLSG 205 (562)
Q Consensus 182 ~Ge~~alvGpsGsGKSTLl~~L~G 205 (562)
..-.++|.||+|||||||+..|..
T Consensus 50 ~~~~igitG~pGaGKSTli~~l~~ 73 (323)
T d2qm8a1 50 RAIRVGITGVPGVGKSTTIDALGS 73 (323)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEeeeCCCCCCHHHHHHHHHH
Confidence 345899999999999999999985
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.70 E-value=0.015 Score=50.54 Aligned_cols=20 Identities=40% Similarity=0.607 Sum_probs=18.3
Q ss_pred EEEECCCCCcHHHHHHHHHc
Q 008534 186 LALMGPSGSGKTTLLNLLSG 205 (562)
Q Consensus 186 ~alvGpsGsGKSTLl~~L~G 205 (562)
++++|.+|+|||||++.+.+
T Consensus 5 i~vvG~~~vGKTSli~~l~~ 24 (166)
T d1g16a_ 5 ILLIGDSGVGKSCLLVRFVE 24 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999998775
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.69 E-value=0.014 Score=50.82 Aligned_cols=21 Identities=24% Similarity=0.368 Sum_probs=18.9
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 008534 185 VLALMGPSGSGKTTLLNLLSG 205 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G 205 (562)
.++|+|++|+|||||++.+.+
T Consensus 6 Kv~liG~~~vGKTsLl~~~~~ 26 (167)
T d1xtqa1 6 KIAILGYRSVGKSSLTIQFVE 26 (167)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999998764
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.68 E-value=0.017 Score=50.41 Aligned_cols=21 Identities=29% Similarity=0.506 Sum_probs=18.6
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 008534 185 VLALMGPSGSGKTTLLNLLSG 205 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G 205 (562)
.++|+|.+|+|||||++-+.+
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~ 24 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 478999999999999988775
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.64 E-value=0.016 Score=50.90 Aligned_cols=20 Identities=30% Similarity=0.589 Sum_probs=18.2
Q ss_pred EEEECCCCCcHHHHHHHHHc
Q 008534 186 LALMGPSGSGKTTLLNLLSG 205 (562)
Q Consensus 186 ~alvGpsGsGKSTLl~~L~G 205 (562)
++|+|++|+|||||++-+.+
T Consensus 6 ivvvG~~~vGKTsli~r~~~ 25 (173)
T d2a5ja1 6 YIIIGDTGVGKSCLLLQFTD 25 (173)
T ss_dssp EEEESSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHhc
Confidence 78999999999999998765
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=93.64 E-value=0.033 Score=50.10 Aligned_cols=33 Identities=30% Similarity=0.278 Sum_probs=27.0
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHH
Q 008534 171 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLS 204 (562)
Q Consensus 171 ~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~ 204 (562)
..||..-..+ .|.-+.|.|+||+|||||.-.|.
T Consensus 4 ~~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~ 36 (177)
T d1knxa2 4 AQIHGVLLEV-FGVGVLLTGRSGIGKSECALDLI 36 (177)
T ss_dssp EEEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHH
T ss_pred ceEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHH
Confidence 3566666666 78899999999999999987776
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.62 E-value=0.019 Score=50.32 Aligned_cols=20 Identities=35% Similarity=0.647 Sum_probs=17.8
Q ss_pred EEEECCCCCcHHHHHHHHHc
Q 008534 186 LALMGPSGSGKTTLLNLLSG 205 (562)
Q Consensus 186 ~alvGpsGsGKSTLl~~L~G 205 (562)
++|+|++|+|||||++-+..
T Consensus 9 I~vvG~~~vGKSSli~~~~~ 28 (174)
T d1wmsa_ 9 VILLGDGGVGKSSLMNRYVT 28 (174)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 78999999999999977664
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=93.60 E-value=0.018 Score=52.54 Aligned_cols=21 Identities=43% Similarity=0.681 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 008534 185 VLALMGPSGSGKTTLLNLLSG 205 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G 205 (562)
++||.|+.||||||..+++..
T Consensus 5 iIgitG~igSGKStv~~~l~~ 25 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFAD 25 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCcCCHHHHHHHHHH
Confidence 789999999999999999974
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=93.59 E-value=0.013 Score=60.33 Aligned_cols=44 Identities=25% Similarity=0.557 Sum_probs=28.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEccC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQD 237 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~~~igyV~Q~ 237 (562)
-+.++||+|+|||-|.+.|++.+.-|. +..+.-.+ ..+|||-.|
T Consensus 51 NILliGPTGvGKTlLAr~LAk~l~VPF----v~~daT~f-----TeaGYvG~D 94 (443)
T d1g41a_ 51 NILMIGPTGVGKTEIARRLAKLANAPF----IKVEATKF-----TEVGYVGKE 94 (443)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTTCCE----EEEEGGGG-----C----CCCC
T ss_pred cEEEECCCCCCHHHHHHHHHHHhCCCE----EEeeccee-----eecceeecc
Confidence 578999999999999999998654332 44444332 237777765
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=93.59 E-value=0.017 Score=53.55 Aligned_cols=21 Identities=38% Similarity=0.751 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 008534 185 VLALMGPSGSGKTTLLNLLSG 205 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G 205 (562)
++||+|...||||||++.|.+
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~ 27 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRG 27 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCccHHHHHHHHHh
Confidence 599999999999999999987
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=93.55 E-value=0.019 Score=54.53 Aligned_cols=25 Identities=32% Similarity=0.610 Sum_probs=21.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcC
Q 008534 182 PGEVLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 182 ~Ge~~alvGpsGsGKSTLl~~L~G~ 206 (562)
+..-+.|.||+|+|||+|.+.|+..
T Consensus 44 ~~~~iLL~GppGtGKT~la~~iA~~ 68 (256)
T d1lv7a_ 44 IPKGVLMVGPPGTGKTLLAKAIAGE 68 (256)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEeeCCCCCCccHHHHHHHHH
Confidence 3345789999999999999999963
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=93.54 E-value=0.021 Score=52.96 Aligned_cols=24 Identities=33% Similarity=0.404 Sum_probs=19.8
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcC
Q 008534 183 GEVLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 183 Ge~~alvGpsGsGKSTLl~~L~G~ 206 (562)
-.+++++||+|+||||.+-=|+-+
T Consensus 11 p~vi~lvGptGvGKTTTiAKLAa~ 34 (213)
T d1vmaa2 11 PFVIMVVGVNGTGKTTSCGKLAKM 34 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
Confidence 348999999999999988666644
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.54 E-value=0.018 Score=50.29 Aligned_cols=23 Identities=30% Similarity=0.589 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~l 207 (562)
.++|+|.+|+|||||++.+.+..
T Consensus 3 Ki~lvG~~~vGKTsLi~~~~~~~ 25 (168)
T d2gjsa1 3 KVLLLGAPGVGKSALARIFGGVE 25 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCcCHHHHHHHHhCCc
Confidence 37899999999999999998743
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=93.52 E-value=0.02 Score=52.94 Aligned_cols=24 Identities=33% Similarity=0.401 Sum_probs=21.4
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 008534 184 EVLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 184 e~~alvGpsGsGKSTLl~~L~G~l 207 (562)
..+.|.||+|+||||+++.|+..+
T Consensus 44 ~~lll~GppGtGKT~l~~~l~~~l 67 (276)
T d1fnna2 44 PRATLLGRPGTGKTVTLRKLWELY 67 (276)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHHH
Confidence 478899999999999999999654
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.45 E-value=0.016 Score=50.63 Aligned_cols=21 Identities=29% Similarity=0.412 Sum_probs=18.6
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 008534 185 VLALMGPSGSGKTTLLNLLSG 205 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G 205 (562)
.++|+|.+|+|||||++-+.+
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~ 27 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQ 27 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 489999999999999987665
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=93.44 E-value=0.0098 Score=57.76 Aligned_cols=23 Identities=22% Similarity=0.530 Sum_probs=17.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~l 207 (562)
++||.|+|||||||+.+.|...+
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i~ 28 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQIF 28 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHH
Confidence 79999999999999999998543
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=93.42 E-value=0.018 Score=54.33 Aligned_cols=22 Identities=36% Similarity=0.478 Sum_probs=19.9
Q ss_pred eEEEEECCCCCcHHHHHHHHHc
Q 008534 184 EVLALMGPSGSGKTTLLNLLSG 205 (562)
Q Consensus 184 e~~alvGpsGsGKSTLl~~L~G 205 (562)
.-+.|.||+|+|||+|.+.|+.
T Consensus 41 ~~vLL~GppGtGKT~la~alA~ 62 (246)
T d1d2na_ 41 VSVLLEGPPHSGKTALAAKIAE 62 (246)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHhh
Confidence 3578999999999999999996
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.38 E-value=0.018 Score=50.32 Aligned_cols=22 Identities=32% Similarity=0.566 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|++|+|||||++.+.+.
T Consensus 7 Ki~lvG~~~vGKTsLi~~l~~~ 28 (171)
T d2ew1a1 7 KIVLIGNAGVGKTCLVRRFTQG 28 (171)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 3889999999999999988763
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.36 E-value=0.021 Score=49.64 Aligned_cols=22 Identities=23% Similarity=0.418 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|.+|+|||||++-+.+.
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~~ 26 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4899999999999999888764
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=93.33 E-value=0.025 Score=50.01 Aligned_cols=28 Identities=29% Similarity=0.293 Sum_probs=24.9
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcC
Q 008534 179 SVNPGEVLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 179 ~i~~Ge~~alvGpsGsGKSTLl~~L~G~ 206 (562)
..+||.+++|-|+=|||||||.|.++.-
T Consensus 29 ~~~~g~ii~L~G~LGaGKTtfvr~~~~~ 56 (158)
T d1htwa_ 29 HTEKAIMVYLNGDLGAGKTTLTRGMLQG 56 (158)
T ss_dssp CCSSCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCCCeEEEEecCCCccHHHHHHHHHhh
Confidence 3469999999999999999999999853
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.32 E-value=0.021 Score=50.53 Aligned_cols=20 Identities=40% Similarity=0.709 Sum_probs=18.2
Q ss_pred EEEECCCCCcHHHHHHHHHc
Q 008534 186 LALMGPSGSGKTTLLNLLSG 205 (562)
Q Consensus 186 ~alvGpsGsGKSTLl~~L~G 205 (562)
++|+|.+|+|||||++-+.+
T Consensus 5 v~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 5 VIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999987775
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=93.26 E-value=0.012 Score=52.02 Aligned_cols=21 Identities=38% Similarity=0.562 Sum_probs=18.7
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 008534 185 VLALMGPSGSGKTTLLNLLSG 205 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G 205 (562)
.++|+|++|+|||||++.+.+
T Consensus 19 KI~lvG~~~vGKTsLi~~l~~ 39 (182)
T d1moza_ 19 RILILGLDGAGKTTILYRLQI 39 (182)
T ss_dssp EEEEEEETTSSHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 477999999999999998864
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.23 E-value=0.021 Score=49.40 Aligned_cols=20 Identities=30% Similarity=0.456 Sum_probs=18.2
Q ss_pred EEEECCCCCcHHHHHHHHHc
Q 008534 186 LALMGPSGSGKTTLLNLLSG 205 (562)
Q Consensus 186 ~alvGpsGsGKSTLl~~L~G 205 (562)
++|+|..|+|||||++-+.+
T Consensus 5 v~liG~~~vGKTsLl~~~~~ 24 (165)
T d1z06a1 5 IIVIGDSNVGKTCLTYRFCA 24 (165)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999997774
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.17 E-value=0.021 Score=52.29 Aligned_cols=20 Identities=35% Similarity=0.512 Sum_probs=18.4
Q ss_pred EEEECCCCCcHHHHHHHHHc
Q 008534 186 LALMGPSGSGKTTLLNLLSG 205 (562)
Q Consensus 186 ~alvGpsGsGKSTLl~~L~G 205 (562)
+.|-||+|+||||+.++|+.
T Consensus 39 ~ll~Gp~G~GKTt~a~~la~ 58 (224)
T d1sxjb2 39 MIISGMPGIGKTTSVHCLAH 58 (224)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCchhhHHHHHH
Confidence 67899999999999999985
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.16 E-value=0.023 Score=50.98 Aligned_cols=23 Identities=43% Similarity=0.749 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~l 207 (562)
+++|-|+-||||||+++.|...+
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l 24 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999998654
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=93.16 E-value=0.024 Score=52.50 Aligned_cols=24 Identities=33% Similarity=0.542 Sum_probs=19.8
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 008534 184 EVLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 184 e~~alvGpsGsGKSTLl~~L~G~l 207 (562)
.+++++||+|+||||.+-=|+-++
T Consensus 10 ~vi~lvGptGvGKTTTiAKLA~~~ 33 (211)
T d2qy9a2 10 FVILMVGVNGVGKTTTIGKLARQF 33 (211)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 589999999999999886667443
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.12 E-value=0.024 Score=49.31 Aligned_cols=20 Identities=30% Similarity=0.596 Sum_probs=18.2
Q ss_pred EEEECCCCCcHHHHHHHHHc
Q 008534 186 LALMGPSGSGKTTLLNLLSG 205 (562)
Q Consensus 186 ~alvGpsGsGKSTLl~~L~G 205 (562)
++|+|.+|+|||||++.+.+
T Consensus 7 ivlvG~~~vGKTsli~~~~~ 26 (166)
T d1z0fa1 7 YIIIGDMGVGKSCLLHQFTE 26 (166)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999988775
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=93.11 E-value=0.022 Score=52.72 Aligned_cols=25 Identities=32% Similarity=0.320 Sum_probs=16.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcC
Q 008534 182 PGEVLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 182 ~Ge~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.-.+++++||+|+||||.+-=|+-+
T Consensus 11 ~p~vi~lvGptGvGKTTTiAKLA~~ 35 (211)
T d1j8yf2 11 IPYVIMLVGVQGTGKATTAGKLAYF 35 (211)
T ss_dssp SSEEEEEECSCCC----HHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 3457999999999999988666643
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.09 E-value=0.022 Score=49.29 Aligned_cols=21 Identities=29% Similarity=0.452 Sum_probs=18.9
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 008534 185 VLALMGPSGSGKTTLLNLLSG 205 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G 205 (562)
.++|+|..|+|||||++.+.+
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~ 22 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMY 22 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999998875
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.99 E-value=0.021 Score=51.25 Aligned_cols=20 Identities=50% Similarity=0.679 Sum_probs=18.3
Q ss_pred EEEECCCCCcHHHHHHHHHc
Q 008534 186 LALMGPSGSGKTTLLNLLSG 205 (562)
Q Consensus 186 ~alvGpsGsGKSTLl~~L~G 205 (562)
++|+|+.|+|||||++.+.+
T Consensus 9 ivvvG~~~vGKTsli~~l~~ 28 (194)
T d2bcgy1 9 LLLIGNSGVGKSCLLLRFSD 28 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHhh
Confidence 88999999999999997775
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.98 E-value=0.025 Score=49.74 Aligned_cols=21 Identities=33% Similarity=0.631 Sum_probs=18.9
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 008534 186 LALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 186 ~alvGpsGsGKSTLl~~L~G~ 206 (562)
++|+|..|+|||||++.+.+.
T Consensus 10 i~vvG~~~vGKTsli~~l~~~ 30 (177)
T d1x3sa1 10 ILIIGESGVGKSSLLLRFTDD 30 (177)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999987763
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.96 E-value=0.028 Score=49.34 Aligned_cols=22 Identities=41% Similarity=0.745 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|.+|+|||||++.+.+.
T Consensus 5 Kv~lvG~~~vGKTsLi~~~~~~ 26 (172)
T d2g3ya1 5 RVVLIGEQGVGKSTLANIFAGV 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 3789999999999999999874
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.88 E-value=0.026 Score=49.04 Aligned_cols=21 Identities=24% Similarity=0.528 Sum_probs=18.7
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 008534 185 VLALMGPSGSGKTTLLNLLSG 205 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G 205 (562)
.++|+|.+|+|||||++-+..
T Consensus 6 Ki~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 6 KVCLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 378999999999999988875
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.82 E-value=0.021 Score=52.74 Aligned_cols=43 Identities=9% Similarity=0.170 Sum_probs=29.9
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCCh
Q 008534 313 NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSS 357 (562)
Q Consensus 313 ~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~ 357 (562)
+.+++++||.-. |.......+.+.+.+.. ....+|++++++..
T Consensus 131 ~~~iiiide~d~-l~~~~~~~l~~~~e~~~-~~~~~Il~tn~~~~ 173 (252)
T d1sxje2 131 RYKCVIINEANS-LTKDAQAALRRTMEKYS-KNIRLIMVCDSMSP 173 (252)
T ss_dssp CCEEEEEECTTS-SCHHHHHHHHHHHHHST-TTEEEEEEESCSCS
T ss_pred CceEEEeccccc-cccccchhhhccccccc-ccccceeeeccccc
Confidence 567999999854 77777777776665432 24557888888653
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.79 E-value=0.025 Score=49.67 Aligned_cols=22 Identities=36% Similarity=0.460 Sum_probs=19.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|.+|+|||||++.+.+.
T Consensus 4 KivvvG~~~vGKTsLi~~~~~~ 25 (177)
T d1kmqa_ 4 KLVIVGDGACGKTCLLIVNSKD 25 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4789999999999999887753
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=92.73 E-value=0.026 Score=53.21 Aligned_cols=22 Identities=41% Similarity=0.711 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
-+.+.||+|+|||+|.+.|+..
T Consensus 44 giLl~GppGtGKT~la~aia~~ 65 (247)
T d1ixza_ 44 GVLLVGPPGVGKTHLARAVAGE 65 (247)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEecCCCCChhHHHHHHHHH
Confidence 3789999999999999999973
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.72 E-value=0.022 Score=54.17 Aligned_cols=28 Identities=29% Similarity=0.576 Sum_probs=22.8
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 008534 180 VNPGEVLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 180 i~~Ge~~alvGpsGsGKSTLl~~L~G~l 207 (562)
+++..-+.|.||+|+|||+|++.|++.+
T Consensus 38 ~~~~~giLL~Gp~GtGKT~l~~ala~~~ 65 (265)
T d1r7ra3 38 MTPSKGVLFYGPPGCGKTLLAKAIANEC 65 (265)
T ss_dssp CCCCCEEEEBCCTTSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcchhHHHHHHHHh
Confidence 3344558899999999999999999743
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.71 E-value=0.029 Score=48.69 Aligned_cols=21 Identities=29% Similarity=0.385 Sum_probs=18.4
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 008534 185 VLALMGPSGSGKTTLLNLLSG 205 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G 205 (562)
.++|+|.+|+|||||++-+.+
T Consensus 5 KivlvG~~~vGKTsLi~r~~~ 25 (167)
T d1z08a1 5 KVVLLGEGCVGKTSLVLRYCE 25 (167)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 378999999999999997765
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=92.69 E-value=0.018 Score=50.55 Aligned_cols=21 Identities=33% Similarity=0.468 Sum_probs=19.0
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 008534 185 VLALMGPSGSGKTTLLNLLSG 205 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G 205 (562)
.++|+|++|+|||||++.+.+
T Consensus 14 kIvlvG~~~vGKTSli~rl~~ 34 (173)
T d1e0sa_ 14 RILMLGLDAAGKTTILYKLKL 34 (173)
T ss_dssp EEEEEEETTSSHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 477999999999999999875
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.65 E-value=0.025 Score=49.47 Aligned_cols=20 Identities=30% Similarity=0.630 Sum_probs=18.3
Q ss_pred EEEECCCCCcHHHHHHHHHc
Q 008534 186 LALMGPSGSGKTTLLNLLSG 205 (562)
Q Consensus 186 ~alvGpsGsGKSTLl~~L~G 205 (562)
++|+|..|+|||||++-+.+
T Consensus 8 I~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 8 FLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 88999999999999998764
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.63 E-value=0.027 Score=51.38 Aligned_cols=41 Identities=10% Similarity=0.212 Sum_probs=26.7
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCC
Q 008534 314 PSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPS 356 (562)
Q Consensus 314 P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~ 356 (562)
.+++++||. -.+.......++..|.+... ...++++++++.
T Consensus 100 ~kiiiiDe~-d~~~~~~~~~Ll~~le~~~~-~~~~~~~~~~~~ 140 (227)
T d1sxjc2 100 FKLIILDEA-DAMTNAAQNALRRVIERYTK-NTRFCVLANYAH 140 (227)
T ss_dssp CEEEEETTG-GGSCHHHHHHHHHHHHHTTT-TEEEEEEESCGG
T ss_pred eEEEEEecc-ccchhhHHHHHHHHhhhccc-ceeeccccCcHH
Confidence 469999997 46777777777777765432 334455555543
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.46 E-value=0.033 Score=48.47 Aligned_cols=21 Identities=24% Similarity=0.469 Sum_probs=18.3
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 008534 185 VLALMGPSGSGKTTLLNLLSG 205 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G 205 (562)
.++|+|.+|+|||||++-+.+
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~ 25 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVS 25 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999997664
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.45 E-value=0.033 Score=48.51 Aligned_cols=22 Identities=32% Similarity=0.551 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|++|+|||||++-+.+.
T Consensus 4 Ki~lvG~~~vGKTsli~r~~~~ 25 (168)
T d2atva1 4 KLAIFGRAGVGKSALVVRFLTK 25 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3789999999999999988763
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.37 E-value=0.029 Score=49.19 Aligned_cols=21 Identities=29% Similarity=0.417 Sum_probs=18.5
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 008534 185 VLALMGPSGSGKTTLLNLLSG 205 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G 205 (562)
.++|+|.+|+|||||++-+.+
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~ 28 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQ 28 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999987664
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.35 E-value=0.034 Score=49.12 Aligned_cols=22 Identities=27% Similarity=0.330 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|.+|+|||||++-+.+.
T Consensus 7 KivviG~~~vGKTsli~~~~~~ 28 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTTN 28 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999877753
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.33 E-value=0.034 Score=53.75 Aligned_cols=43 Identities=30% Similarity=0.480 Sum_probs=29.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEccCCCCC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLF 241 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~~~igyV~Q~~~l~ 241 (562)
++||-|+.|||||||.+.|.-.+.. . ......+..++.|+...
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~L~~-~-------------~~~~~~v~~iS~DdfY~ 71 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNHLME-K-------------YGGEKSIGYASIDDFYL 71 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHH-H-------------HGGGSCEEEEEGGGGBC
T ss_pred EEEeECCCCCCHHHHHHHHHHHHHH-H-------------hCCCcceEeeccCCCCC
Confidence 8899999999999999887643310 0 01133578888888643
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.30 E-value=0.02 Score=50.17 Aligned_cols=20 Identities=50% Similarity=0.645 Sum_probs=8.6
Q ss_pred EEEECCCCCcHHHHHHHHHc
Q 008534 186 LALMGPSGSGKTTLLNLLSG 205 (562)
Q Consensus 186 ~alvGpsGsGKSTLl~~L~G 205 (562)
++|+|..|+|||||++.+.+
T Consensus 9 i~vvG~~~vGKTsLi~~l~~ 28 (173)
T d2fu5c1 9 LLLIGDSGVGKTCVLFRFSE 28 (173)
T ss_dssp EEEECCCCC-----------
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 88999999999999987765
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=92.29 E-value=0.021 Score=52.99 Aligned_cols=23 Identities=35% Similarity=0.537 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~l 207 (562)
++.|.||+|+||||+++.++..+
T Consensus 48 ~l~l~GppGtGKT~l~~~l~~~l 70 (287)
T d1w5sa2 48 IYGSIGRVGIGKTTLAKFTVKRV 70 (287)
T ss_dssp EEECTTCCSSSHHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHHH
Confidence 45667999999999999999643
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.27 E-value=0.033 Score=48.52 Aligned_cols=21 Identities=33% Similarity=0.482 Sum_probs=18.7
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 008534 185 VLALMGPSGSGKTTLLNLLSG 205 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G 205 (562)
.++|+|.+|+|||||++-+.+
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~ 28 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999988874
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=92.20 E-value=0.064 Score=48.04 Aligned_cols=33 Identities=24% Similarity=0.208 Sum_probs=24.9
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHc
Q 008534 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSG 205 (562)
Q Consensus 172 iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G 205 (562)
.||..-. .-.|.-++|.|+||+|||||.-.|..
T Consensus 4 ~lH~~~v-~~~g~gvl~~G~sG~GKStlal~l~~ 36 (176)
T d1kkma_ 4 SMHGVLV-DIYGLGVLITGDSGVGKSETALELVQ 36 (176)
T ss_dssp EEEEEEE-EETTEEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEEE-EECCEEEEEEeCCCCCHHHHHHHHHH
Confidence 4554444 44677899999999999999877664
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.12 E-value=0.035 Score=48.32 Aligned_cols=20 Identities=45% Similarity=0.634 Sum_probs=17.9
Q ss_pred EEEECCCCCcHHHHHHHHHc
Q 008534 186 LALMGPSGSGKTTLLNLLSG 205 (562)
Q Consensus 186 ~alvGpsGsGKSTLl~~L~G 205 (562)
++|+|+.|+|||||++-+.+
T Consensus 9 i~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 9 VMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 89999999999999996654
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.08 E-value=0.036 Score=48.37 Aligned_cols=21 Identities=29% Similarity=0.415 Sum_probs=18.5
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 008534 185 VLALMGPSGSGKTTLLNLLSG 205 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G 205 (562)
.++++|.+|+|||||++-+.+
T Consensus 6 Ki~lvG~~~vGKTsll~~~~~ 26 (169)
T d1x1ra1 6 KLVVVGDGGVGKSALTIQFFQ 26 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 467999999999999998775
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.03 E-value=0.022 Score=49.94 Aligned_cols=21 Identities=38% Similarity=0.548 Sum_probs=17.9
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 008534 185 VLALMGPSGSGKTTLLNLLSG 205 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G 205 (562)
.++|+|++|+|||||++.+.+
T Consensus 5 Ki~vvG~~~vGKTsli~~~~~ 25 (170)
T d1i2ma_ 5 KLVLVGDGGTGKTTFVKRHLT 25 (170)
T ss_dssp EEEEEECTTSSHHHHHHTTC-
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999987664
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.95 E-value=0.039 Score=52.10 Aligned_cols=22 Identities=32% Similarity=0.610 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
-+.|.||+|+|||+|++.++..
T Consensus 40 giLL~GppGtGKT~l~~ala~~ 61 (258)
T d1e32a2 40 GILLYGPPGTGKTLIARAVANE 61 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eeEEecCCCCCchHHHHHHHHH
Confidence 3789999999999999999973
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.87 E-value=0.042 Score=48.64 Aligned_cols=20 Identities=35% Similarity=0.617 Sum_probs=18.0
Q ss_pred EEEEECCCCCcHHHHHHHHH
Q 008534 185 VLALMGPSGSGKTTLLNLLS 204 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~ 204 (562)
.+.|+|.+|+|||||++-+.
T Consensus 4 KivllG~~~vGKTsll~r~~ 23 (200)
T d1zcba2 4 KILLLGAGESGKSTFLKQMR 23 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 47899999999999999884
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=91.86 E-value=0.043 Score=47.86 Aligned_cols=21 Identities=24% Similarity=0.371 Sum_probs=18.5
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 008534 185 VLALMGPSGSGKTTLLNLLSG 205 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G 205 (562)
.++|+|.+|+|||||++-+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 578999999999999998654
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=91.44 E-value=0.051 Score=54.85 Aligned_cols=52 Identities=19% Similarity=0.290 Sum_probs=36.3
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCE
Q 008534 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDK 365 (562)
Q Consensus 305 ~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~ 365 (562)
+|..+|=.+|+++++.|.. |+.++...+ +.+..|+.|+.+.|-.+. ....+|
T Consensus 219 ~l~~~lR~dPDvi~igEiR---d~~ta~~a~----~aa~tGhlV~tTlHa~~a--~~~~~R 270 (401)
T d1p9ra_ 219 GLRAILRQDPDVVMVGEIR---DLETAQIAV----QASLTGHLVMSTLHTNTA--VGAVTR 270 (401)
T ss_dssp HHHHHGGGCCSEEEESCCC---SHHHHHHHH----HHHHTTCEEEEEECCSSS--HHHHHH
T ss_pred HHHHHHhhcCCEEEecCcC---ChHHHHHHH----HHHhcCCeEEEEeccCch--Hhhhhh
Confidence 3445666799999999986 666655544 345579999999997542 344444
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.37 E-value=0.049 Score=48.23 Aligned_cols=21 Identities=29% Similarity=0.368 Sum_probs=18.5
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 008534 185 VLALMGPSGSGKTTLLNLLSG 205 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G 205 (562)
.++|+|.+|+|||||++.+..
T Consensus 11 Ki~lvG~~~vGKTsLi~r~~~ 31 (185)
T d2atxa1 11 KCVVVGDGAVGKTCLLMSYAN 31 (185)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhh
Confidence 389999999999999987664
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=91.33 E-value=0.061 Score=51.17 Aligned_cols=28 Identities=36% Similarity=0.600 Sum_probs=25.2
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHc
Q 008534 178 GSVNPGEVLALMGPSGSGKTTLLNLLSG 205 (562)
Q Consensus 178 ~~i~~Ge~~alvGpsGsGKSTLl~~L~G 205 (562)
+=+++|.++-|.||+|+|||||.-.++.
T Consensus 49 GGi~~g~itei~G~~gsGKTtl~l~~~~ 76 (263)
T d1u94a1 49 GGLPMGRIVEIYGPESSGKTTLTLQVIA 76 (263)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCccCceEEEEecCCCcHHHHHHHHHHH
Confidence 6799999999999999999999876664
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.33 E-value=0.048 Score=47.23 Aligned_cols=21 Identities=29% Similarity=0.490 Sum_probs=18.5
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 008534 185 VLALMGPSGSGKTTLLNLLSG 205 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G 205 (562)
.++|+|.+|+|||||++-+.+
T Consensus 5 KivvvG~~~vGKTsli~r~~~ 25 (167)
T d1c1ya_ 5 KLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 378999999999999997765
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.32 E-value=0.048 Score=48.19 Aligned_cols=22 Identities=27% Similarity=0.481 Sum_probs=19.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++++|.+|+|||||++-+.+.
T Consensus 7 ki~vlG~~~vGKTsLi~~~~~~ 28 (175)
T d2bmja1 7 RLGVLGDARSGKSSLIHRFLTG 28 (175)
T ss_dssp EEEEECCTTTTHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999976653
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=91.20 E-value=0.086 Score=46.83 Aligned_cols=33 Identities=27% Similarity=0.179 Sum_probs=25.2
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHc
Q 008534 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSG 205 (562)
Q Consensus 172 iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G 205 (562)
.||. ++-.-.|.-+.|.|+||+|||||.-.|.-
T Consensus 5 ~~H~-~~v~~~g~gvli~G~sg~GKS~la~~l~~ 37 (169)
T d1ko7a2 5 SLHG-VLVDVYGVGVLITGDSGIGKSETALELIK 37 (169)
T ss_dssp EEES-EEEEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEE-EEEEECCEEEEEEeCCCCCHHHHHHHHHH
Confidence 4555 44455788999999999999999866653
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=91.14 E-value=0.049 Score=52.63 Aligned_cols=28 Identities=25% Similarity=0.445 Sum_probs=25.7
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHc
Q 008534 178 GSVNPGEVLALMGPSGSGKTTLLNLLSG 205 (562)
Q Consensus 178 ~~i~~Ge~~alvGpsGsGKSTLl~~L~G 205 (562)
+.|-.|+..+|+|++|+|||||+..|+.
T Consensus 38 ~PigrGQr~~I~g~~g~GKT~l~~~i~~ 65 (289)
T d1xpua3 38 SPIGRGQRGLIVAPPKAGKTMLLQNIAQ 65 (289)
T ss_dssp SCCBTTCEEEEEECSSSSHHHHHHHHHH
T ss_pred ccccCCCeeeEeCCCCCCHHHHHHHHHH
Confidence 4788999999999999999999999884
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=91.10 E-value=0.054 Score=49.65 Aligned_cols=20 Identities=35% Similarity=0.609 Sum_probs=18.0
Q ss_pred EEEEECCCCCcHHHHHHHHH
Q 008534 185 VLALMGPSGSGKTTLLNLLS 204 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~ 204 (562)
.+.|+|.+|+|||||++-+.
T Consensus 8 KilllG~~~vGKTsll~~~~ 27 (221)
T d1azta2 8 RLLLLGAGESGKSTIVKQMR 27 (221)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 57899999999999998775
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=90.98 E-value=0.062 Score=52.35 Aligned_cols=24 Identities=38% Similarity=0.555 Sum_probs=21.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHc
Q 008534 182 PGEVLALMGPSGSGKTTLLNLLSG 205 (562)
Q Consensus 182 ~Ge~~alvGpsGsGKSTLl~~L~G 205 (562)
|...+.++||+|+|||.|.+.|+-
T Consensus 51 p~~~~lf~Gp~GvGKT~lak~la~ 74 (315)
T d1r6bx3 51 PVGSFLFAGPTGVGKTEVTVQLSK 74 (315)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCcchhHHHHHHHHh
Confidence 344688999999999999999995
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=90.90 E-value=0.051 Score=52.57 Aligned_cols=21 Identities=19% Similarity=0.381 Sum_probs=19.4
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 008534 186 LALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 186 ~alvGpsGsGKSTLl~~L~G~ 206 (562)
+||+|.+-+|||||++.|+|-
T Consensus 3 v~lvG~pn~GKStlfn~lt~~ 23 (319)
T d1wxqa1 3 IGVVGKPNVGKSTFFSAATLV 23 (319)
T ss_dssp EEEEECTTSSHHHHHHHHHC-
T ss_pred EeEECCCCCCHHHHHHHHHCC
Confidence 799999999999999999983
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.78 E-value=0.052 Score=48.24 Aligned_cols=21 Identities=29% Similarity=0.341 Sum_probs=18.1
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 008534 185 VLALMGPSGSGKTTLLNLLSG 205 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G 205 (562)
.++|+|.+|+|||||++-+.+
T Consensus 5 KvvllG~~~vGKTSli~r~~~ 25 (191)
T d2ngra_ 5 KCVVVGDGAVGKTCLLISYTT 25 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 488999999999999977654
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.72 E-value=0.061 Score=47.43 Aligned_cols=21 Identities=33% Similarity=0.599 Sum_probs=17.7
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 008534 185 VLALMGPSGSGKTTLLNLLSG 205 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G 205 (562)
.++|+|.+|+|||||++-+..
T Consensus 4 KivliG~~~vGKTsli~r~~~ 24 (179)
T d1m7ba_ 4 KIVVVGDSQCGKTALLHVFAK 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999975554
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.68 E-value=0.052 Score=52.11 Aligned_cols=32 Identities=44% Similarity=0.670 Sum_probs=25.6
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcC
Q 008534 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 172 iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~ 206 (562)
+|+.++- |=-+++|+||-++|||||||.|.|.
T Consensus 24 ~l~~~~~---~v~vvsi~G~~~sGKS~llN~l~~~ 55 (277)
T d1f5na2 24 ILSAITQ---PMVVVAIVGLYRTGKSYLMNKLAGK 55 (277)
T ss_dssp HHHTCCS---BEEEEEEEEBTTSSHHHHHHHHTTC
T ss_pred HHHcCCC---CEEEEEEECCCCCCHHHHHHHHcCC
Confidence 5555543 2358999999999999999999984
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=90.54 E-value=0.073 Score=48.90 Aligned_cols=22 Identities=27% Similarity=0.425 Sum_probs=20.1
Q ss_pred eEEEEECCCCCcHHHHHHHHHc
Q 008534 184 EVLALMGPSGSGKTTLLNLLSG 205 (562)
Q Consensus 184 e~~alvGpsGsGKSTLl~~L~G 205 (562)
.++||.|+-||||||+.+.|..
T Consensus 2 ~iIgiTG~igSGKsTva~~l~e 23 (241)
T d1deka_ 2 KLIFLSGVKRSGKDTTADFIMS 23 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999974
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=90.51 E-value=0.067 Score=47.85 Aligned_cols=22 Identities=36% Similarity=0.586 Sum_probs=20.1
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 008534 186 LALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 186 ~alvGpsGsGKSTLl~~L~G~l 207 (562)
+||+|.-.+|||||++.|.|..
T Consensus 8 IaiiGhvd~GKSTL~~~L~g~~ 29 (195)
T d1kk1a3 8 IGMVGHVDHGKTTLTKALTGVW 29 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEeccCCcHHHHHHHHHhhh
Confidence 7999999999999999999843
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=90.10 E-value=0.061 Score=51.73 Aligned_cols=22 Identities=18% Similarity=0.392 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.+||||.+-+|||||+++|++-
T Consensus 12 kiGivG~Pn~GKSTlfnalT~~ 33 (296)
T d1ni3a1 12 KTGIVGMPNVGKSTFFRAITKS 33 (296)
T ss_dssp EEEEEECSSSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 4999999999999999999973
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=89.84 E-value=0.091 Score=50.30 Aligned_cols=23 Identities=30% Similarity=0.583 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~l 207 (562)
.++|+|.-.||||||++.|.|.-
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~ 48 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRD 48 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999954
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=89.70 E-value=0.094 Score=49.90 Aligned_cols=23 Identities=30% Similarity=0.560 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~l 207 (562)
.++|+|.-.||||||+++|+|.-
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Confidence 48899999999999999999953
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.62 E-value=0.088 Score=48.18 Aligned_cols=24 Identities=29% Similarity=0.477 Sum_probs=21.3
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 008534 184 EVLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 184 e~~alvGpsGsGKSTLl~~L~G~l 207 (562)
.+++|=|+-||||||+++.|.-.+
T Consensus 3 k~IviEG~~GsGKST~~~~L~~~l 26 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHC
T ss_pred eEEEEECCCCCcHHHHHHHHHHHH
Confidence 478999999999999999999644
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=89.48 E-value=0.046 Score=53.20 Aligned_cols=23 Identities=30% Similarity=0.514 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~l 207 (562)
-+.|+||.|+|||||++.+++.+
T Consensus 30 ~vLl~G~pG~GKT~lar~~~~iL 52 (333)
T d1g8pa_ 30 GVLVFGDRGTGKSTAVRALAALL 52 (333)
T ss_dssp CEEEECCGGGCTTHHHHHHHHHS
T ss_pred eEEEECCCCccHHHHHHHHHHhC
Confidence 57999999999999999999865
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=89.15 E-value=0.084 Score=52.54 Aligned_cols=38 Identities=32% Similarity=0.257 Sum_probs=29.4
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEE-EECCEeC
Q 008534 181 NPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSI-TYNDHPY 223 (562)
Q Consensus 181 ~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I-~i~G~~~ 223 (562)
+++..+.+.||+|+||||+.+.|++.+ +|.+ .+|+-+.
T Consensus 152 ~~~~~~~~~g~~~~gk~~~~~~~~~~~-----~~~~i~in~s~~ 190 (362)
T d1svma_ 152 PKKRYWLFKGPIDSGKTTLAAALLELC-----GGKALNVNLPLD 190 (362)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHH-----CCEEECCSSCTT
T ss_pred CCcCeEEEECCCCCCHHHHHHHHHHHc-----CCCEEEEECcch
Confidence 667799999999999999999999743 3444 3565444
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.09 E-value=0.091 Score=46.05 Aligned_cols=21 Identities=33% Similarity=0.513 Sum_probs=18.6
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 008534 185 VLALMGPSGSGKTTLLNLLSG 205 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G 205 (562)
.+.|+|..|+|||||++-+..
T Consensus 4 Kiv~lG~~~vGKTsll~r~~~ 24 (200)
T d2bcjq2 4 KLLLLGTGESGKSTFIKQMRI 24 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 478999999999999988864
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=88.72 E-value=0.11 Score=45.16 Aligned_cols=21 Identities=33% Similarity=0.518 Sum_probs=18.5
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 008534 185 VLALMGPSGSGKTTLLNLLSG 205 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G 205 (562)
.++|||..|+|||||++-+..
T Consensus 4 KivllG~~~vGKTsl~~r~~~ 24 (195)
T d1svsa1 4 KLLLLGAGESGKSTIVKQMKI 24 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhh
Confidence 478999999999999988764
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=88.08 E-value=0.11 Score=49.45 Aligned_cols=20 Identities=55% Similarity=0.738 Sum_probs=18.4
Q ss_pred EEEEECCCCCcHHHHHHHHH
Q 008534 185 VLALMGPSGSGKTTLLNLLS 204 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~ 204 (562)
-+||+|..|+|||||+..|.
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll 23 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALL 23 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHH
Confidence 47999999999999999995
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=88.01 E-value=0.12 Score=49.08 Aligned_cols=21 Identities=33% Similarity=0.518 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 008534 185 VLALMGPSGSGKTTLLNLLSG 205 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G 205 (562)
.+||||-+-+|||||++.|++
T Consensus 4 ~~GivG~Pn~GKSTlf~~lt~ 24 (278)
T d1jala1 4 KCGIVGLPNVGKSTLFNALTK 24 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHC
Confidence 589999999999999999997
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=87.94 E-value=0.13 Score=48.96 Aligned_cols=27 Identities=37% Similarity=0.594 Sum_probs=23.6
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHH
Q 008534 178 GSVNPGEVLALMGPSGSGKTTLLNLLS 204 (562)
Q Consensus 178 ~~i~~Ge~~alvGpsGsGKSTLl~~L~ 204 (562)
.=++.|.++-|.||+|+|||||+-.++
T Consensus 55 gG~~~g~i~e~~G~~~~GKT~l~l~~~ 81 (269)
T d1mo6a1 55 GGLPRGRVIEIYGPESSGKTTVALHAV 81 (269)
T ss_dssp SSBCSSSEEEEECSSSSSHHHHHHHHH
T ss_pred CCcccceeEEEecCCCcHHHHHHHHHH
Confidence 468899999999999999999975555
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=87.80 E-value=0.13 Score=46.56 Aligned_cols=21 Identities=33% Similarity=0.370 Sum_probs=18.9
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 008534 185 VLALMGPSGSGKTTLLNLLSG 205 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G 205 (562)
-+||+|..++|||||++.|.+
T Consensus 5 ni~iiGhvd~GKSTL~~~Ll~ 25 (204)
T d2c78a3 5 NVGTIGHVDHGKTTLTAALTY 25 (204)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCcHHHHHHHHHH
Confidence 379999999999999999964
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=87.78 E-value=0.11 Score=47.85 Aligned_cols=21 Identities=48% Similarity=0.556 Sum_probs=19.0
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 008534 185 VLALMGPSGSGKTTLLNLLSG 205 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G 205 (562)
++.|.|.=||||||||+-|..
T Consensus 5 v~iitGFLGaGKTTll~~lL~ 25 (222)
T d1nija1 5 VTLLTGFLGAGKTTLLRHILN 25 (222)
T ss_dssp EEEEEESSSSSCHHHHHHHHH
T ss_pred EEEEeeCCCCCHHHHHHHHHh
Confidence 688999999999999998875
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=87.77 E-value=0.14 Score=50.03 Aligned_cols=28 Identities=29% Similarity=0.453 Sum_probs=22.7
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHcC
Q 008534 178 GSVNPGEVLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 178 ~~i~~Ge~~alvGpsGsGKSTLl~~L~G~ 206 (562)
...+.| ++.+.||+|+|||.|.+.|++.
T Consensus 119 ~~~~~g-~~l~~G~pG~GKT~la~ala~~ 146 (321)
T d1w44a_ 119 HRYASG-MVIVTGKGNSGKTPLVHALGEA 146 (321)
T ss_dssp EEEESE-EEEEECSSSSCHHHHHHHHHHH
T ss_pred cccCCc-eEEEECCCCccHHHHHHHHHHH
Confidence 344454 6677899999999999999974
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=87.39 E-value=0.17 Score=48.15 Aligned_cols=28 Identities=32% Similarity=0.603 Sum_probs=25.6
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHc
Q 008534 178 GSVNPGEVLALMGPSGSGKTTLLNLLSG 205 (562)
Q Consensus 178 ~~i~~Ge~~alvGpsGsGKSTLl~~L~G 205 (562)
+=++.|.++-|-||+|||||||.-.++.
T Consensus 52 GGip~g~itei~G~~~sGKT~l~l~~~~ 79 (268)
T d1xp8a1 52 GGIPRGRITEIYGPESGGKTTLALAIVA 79 (268)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCccCceEEEEecCCccchHHHHHHHHH
Confidence 5789999999999999999999988775
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=86.65 E-value=0.17 Score=46.26 Aligned_cols=47 Identities=13% Similarity=0.161 Sum_probs=37.8
Q ss_pred hhCCCEEEEeCCCCC-CCHHHHHHHHHHHHHHHHCCcEEEEEecCCCh
Q 008534 311 IINPSLLFLDEPTSG-LDSTTALRIVQMLQDIAEAGKTVVTTIHQPSS 357 (562)
Q Consensus 311 l~~P~iLlLDEPTsg-LD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~ 357 (562)
+.+.++|++|+--.= =++..+..+..++..+.+.|+.+|+++..+..
T Consensus 95 ~~~~dll~iDDi~~i~~~~~~~~~lf~lin~~~~~~~~iiits~~~p~ 142 (213)
T d1l8qa2 95 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQ 142 (213)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGG
T ss_pred HhhccchhhhhhhhhcCchHHHHHHHHHHHHHhhccceEEEecCCcch
Confidence 557899999987442 35778888999999988889999999987654
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=86.50 E-value=0.16 Score=48.62 Aligned_cols=20 Identities=20% Similarity=0.228 Sum_probs=18.2
Q ss_pred EEEEECCCCCcHHHHHHHHH
Q 008534 185 VLALMGPSGSGKTTLLNLLS 204 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~ 204 (562)
-+||+|..|||||||+..|.
T Consensus 8 ni~i~gh~~~GKTtL~e~ll 27 (276)
T d2bv3a2 8 NIGIAAHIDAGKTTTTERIL 27 (276)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 47999999999999999884
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=86.49 E-value=0.15 Score=50.83 Aligned_cols=20 Identities=40% Similarity=0.647 Sum_probs=17.2
Q ss_pred EEEEECCCCCcHHHHHHHHH
Q 008534 185 VLALMGPSGSGKTTLLNLLS 204 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~ 204 (562)
-+.|+|++|||||++++.|.
T Consensus 52 H~~I~G~tGsGKT~~l~~li 71 (433)
T d1e9ra_ 52 HLLVNGATGTGKSVLLRELA 71 (433)
T ss_dssp CEEEEECTTSSHHHHHHHHH
T ss_pred eEEEEeCCCCcHHHHHHHHH
Confidence 58999999999999987544
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=86.36 E-value=0.21 Score=47.64 Aligned_cols=28 Identities=32% Similarity=0.481 Sum_probs=25.0
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHc
Q 008534 178 GSVNPGEVLALMGPSGSGKTTLLNLLSG 205 (562)
Q Consensus 178 ~~i~~Ge~~alvGpsGsGKSTLl~~L~G 205 (562)
+.+-.|+..+|+|++|+|||||+.-++-
T Consensus 63 ~pigkGQr~~If~~~g~GKt~l~~~i~~ 90 (276)
T d2jdid3 63 APYAKGGKIGLFGGAGVGKTVLIMELIN 90 (276)
T ss_dssp SCEETTCEEEEEECTTSSHHHHHHHHHH
T ss_pred ccccCCCEEEeeCCCCCCHHHHHHHHHH
Confidence 5788999999999999999999877763
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=86.32 E-value=0.18 Score=45.25 Aligned_cols=23 Identities=30% Similarity=0.534 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~l 207 (562)
-+||+|.-.+|||||++.|.|..
T Consensus 10 ni~iiGhVd~GKSTL~~~L~~~~ 32 (205)
T d2qn6a3 10 NIGVVGHVDHGKTTLVQAITGIW 32 (205)
T ss_dssp EEEEECSTTSSHHHHHHHHHSCC
T ss_pred EEEEEEccCCcHHHHHHHHHhhh
Confidence 58999999999999999999854
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=86.06 E-value=0.19 Score=46.31 Aligned_cols=42 Identities=12% Similarity=0.184 Sum_probs=28.9
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCCh
Q 008534 314 PSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSS 357 (562)
Q Consensus 314 P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~ 357 (562)
.+|+|+||.= .|+...+..+++.|.+.. .+..+|++++++..
T Consensus 116 ~kviiIde~d-~l~~~~q~~Llk~lE~~~-~~~~~il~tn~~~~ 157 (239)
T d1njfa_ 116 FKVYLIDEVH-MLSRHSFNALLKTLEEPP-EHVKFLLATTDPQK 157 (239)
T ss_dssp SEEEEEETGG-GSCHHHHHHHHHHHHSCC-TTEEEEEEESCGGG
T ss_pred CEEEEEECcc-cCCHHHHHHHHHHHhcCC-CCeEEEEEcCCccc
Confidence 4599999985 477777766666665322 25677888887654
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=85.90 E-value=0.2 Score=45.33 Aligned_cols=23 Identities=30% Similarity=0.404 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~l 207 (562)
.+.+.||+|+||||+.+.++..+
T Consensus 26 ~lLl~Gp~G~GKtt~a~~~a~~l 48 (207)
T d1a5ta2 26 ALLIQALPGMGDDALIYALSRYL 48 (207)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHhc
Confidence 48889999999999999998654
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=85.83 E-value=0.19 Score=47.70 Aligned_cols=23 Identities=39% Similarity=0.485 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~l 207 (562)
-+.||||+|.|||+++.-++-++
T Consensus 41 n~lLVG~~GvGKTalv~~la~ri 63 (268)
T d1r6bx2 41 NPLLVGESGVGKTAIAEGLAWRI 63 (268)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEECCCCCcHHHHHHHHHHHH
Confidence 46799999999999999999654
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=85.31 E-value=0.22 Score=45.04 Aligned_cols=23 Identities=35% Similarity=0.577 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~l 207 (562)
-..|+||+|.|||+++.-|+-++
T Consensus 45 n~lLvG~pGVGKTalv~~LA~ri 67 (195)
T d1jbka_ 45 NPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEecCCcccHHHHHHHHHHH
Confidence 36799999999999999999655
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=85.06 E-value=0.22 Score=48.30 Aligned_cols=26 Identities=38% Similarity=0.668 Sum_probs=21.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 008534 182 PGEVLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 182 ~Ge~~alvGpsGsGKSTLl~~L~G~l 207 (562)
|.-.+.++||+|+|||.|.+.|+-.+
T Consensus 52 p~~~~lf~Gp~G~GKt~lak~la~~l 77 (315)
T d1qvra3 52 PIGSFLFLGPTGVGKTELAKTLAATL 77 (315)
T ss_dssp CSEEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCcchHHHHHHHHHHHh
Confidence 33467899999999999999999643
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=83.88 E-value=0.18 Score=47.26 Aligned_cols=16 Identities=31% Similarity=0.534 Sum_probs=13.4
Q ss_pred EEEEECCCCCcHHHHH
Q 008534 185 VLALMGPSGSGKTTLL 200 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl 200 (562)
-+.|+|+.||||||.+
T Consensus 16 ~~lI~g~aGTGKTt~l 31 (306)
T d1uaaa1 16 PCLVLAGAGSGKTRVI 31 (306)
T ss_dssp EEEECCCTTSCHHHHH
T ss_pred CEEEEeeCCccHHHHH
Confidence 4678999999999764
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=83.36 E-value=0.21 Score=47.44 Aligned_cols=25 Identities=36% Similarity=0.597 Sum_probs=17.9
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHH
Q 008534 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLL 200 (562)
Q Consensus 170 ~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl 200 (562)
+.|+++. .| -+.|.|+.||||||.|
T Consensus 17 ~~~v~~~-----~g-~~lV~g~aGSGKTt~l 41 (318)
T d1pjra1 17 QEAVRTT-----EG-PLLIMAGAGSGKTRVL 41 (318)
T ss_dssp HHHHHCC-----SS-CEEEEECTTSCHHHHH
T ss_pred HHHHhCC-----CC-CEEEEecCCccHHHHH
Confidence 3466643 34 4678899999999865
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=83.20 E-value=0.29 Score=48.48 Aligned_cols=25 Identities=36% Similarity=0.636 Sum_probs=20.5
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcC
Q 008534 181 NPGEVLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 181 ~~Ge~~alvGpsGsGKSTLl~~L~G~ 206 (562)
+++ -+.++||+|+|||-|.|.|+-.
T Consensus 67 p~~-niLfiGPTGvGKTElAk~LA~~ 91 (364)
T d1um8a_ 67 SKS-NILLIGPTGSGKTLMAQTLAKH 91 (364)
T ss_dssp CCC-CEEEECCTTSSHHHHHHHHHHH
T ss_pred CCc-ceeeeCCCCccHHHHHHHHHhh
Confidence 444 3677899999999999999953
|
| >d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Escherichia coli [TaxId: 562]
Probab=80.08 E-value=0.37 Score=46.59 Aligned_cols=20 Identities=50% Similarity=0.780 Sum_probs=17.3
Q ss_pred eCCeEEEEECCCCCcHHHHH
Q 008534 181 NPGEVLALMGPSGSGKTTLL 200 (562)
Q Consensus 181 ~~Ge~~alvGpsGsGKSTLl 200 (562)
+.|++.++.|.||+|||||-
T Consensus 12 ~~~~~alfFGLSGTGKTTLs 31 (313)
T d2olra1 12 EKGDVAVFFGLSGTGKTTLS 31 (313)
T ss_dssp TTSCEEEEECSTTSSHHHHH
T ss_pred CCCCEEEEEccCCCCcccce
Confidence 46889999999999999953
|